Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000157037.a #7	ENSGT00940000159350 #8	ENSGT00390000012901 #9	ENSGT00390000003477.i #10	ENSGT00940000158750 #11	ENSGT00390000000483.b #12	ENSGT00390000014853	ENSGT00940000161623 #13	ENSGT00390000016221 #14	ENSGT00940000160490 #15	ENSGT00940000154127.A #16	ENSGT00940000154127.B #17	ENSGT01030000234527.A.a.b.b.b #18	ENSGT00390000003220 #19	ENSGT00940000153713.B.c #21	ENSGT00390000016928 #22	ENSGT00950000182864.a.b.b.a.b.a.a.b #23	ENSGT01030000234638.b.a.b.q.a.b #24	ENSGT01030000234638.b.a.b.q.a.a ##24	ENSGT00730000111375 #26	ENSGT00730000111489 #27	ENSGT00510000046787.e.a #28	ENSGT00390000017405 #29	ENSGT00940000160856	ENSGT00940000161743 #30	ENSGT00940000157583 #31	ENSGT00950000182974.a.b #32	ENSGT00390000015549 #33	ENSGT00950000182808.a.a.a.a.b #34	ENSGT00940000155133.b #35	ENSGT00940000153692.A #37
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000157037.a #7	ENSGT00940000159350 #8	ENSGT00390000012901 #9	ENSGT00390000003477.i #10	ENSGT00940000158750 #11	ENSGT00390000000483.b #12	ENSGT00390000014853	ENSGT00940000161623 #13	ENSGT00390000016221 #14	ENSGT00940000160490 #15	ENSGT00940000154127.A #16	ENSGT00940000154127.B #17	ENSGT01030000234527.A.a.b.b.b #18	ENSGT00390000003220 #19	ENSGT00940000153713.B.c #21	ENSGT00390000016928 #22	ENSGT00950000182864.a.b.b.a.b.a.a.b #23	ENSGT01030000234638.b.a.b.q.a.b #24	ENSGT01030000234638.b.a.b.q.a.a ##24	ENSGT00730000111375 #26	ENSGT00730000111489 #27	ENSGT00510000046787.e.a #28	ENSGT00390000017405 #29	ENSGT00940000160856	ENSGT00940000161743 #30	ENSGT00940000157583 #31	ENSGT00950000182974.a.b #32	ENSGT00390000015549 #33	ENSGT00950000182808.a.a.a.a.b #34	ENSGT00940000155133.b #35	ENSGT00390000006247.e.a
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000157037.a #7	ENSGT00940000159350 #8	ENSGT00390000012901 #9	ENSGT00390000003477.i #10	ENSGT00940000158750 #11	ENSGT00390000000483.b #12	ENSGT00390000014853	ENSGT00940000161623 #13	ENSGT00390000016221 #14	ENSGT00940000160490 #15	ENSGT00940000154127.A #16	ENSGT00940000154127.B #17	ENSGT01030000234527.A.a.b.b.b #18	ENSGT00390000003220 #19	ENSGT00940000153713.B.c #21	ENSGT00390000016928 #22	ENSGT00950000182864.a.b.b.a.b.a.a.b #23	ENSGT01030000234638.b.a.b.q.a.b.a #24	ENSGT00730000111375 #26	ENSGT00730000111489 #27	ENSGT00510000046787.e.a #28	ENSGT00390000017405 #29	ENSGT00940000160856	ENSGT00940000161743 #30	ENSGT00940000157583 #31	ENSGT00950000182974.a.b #32	ENSGT00390000015549 #33	ENSGT00950000182808.a.a.a.a.b #34	ENSGT00940000155133.b #35	ENSGT00390000006247.e.a	ENSGT00940000153692.A #37
Rambouillet Sheep	MODERN SPECIES	22	DRD5 (ENSOARG00020024384) #7	OTOP1 (ENSOARG00020024371) #8	TMEM128 (ENSOARG00020024364) #9	LYAR (ENSOARG00020024350) #10	ZBTB49 (ENSOARG00020024332) #11	NSG1 (ENSOARG00020024305) #12	MSX1 (ENSOARG00020024231) #13	CYTL1 (ENSOARG00020024206) #14	STK32B (ENSOARG00020024051) #15	EVC2 (ENSOARG00020024014) #16	EVC (ENSOARG00020023672) #17	CRMP1 (ENSOARG00020023499) #18	ENSOARG00020023479 #19	ENSOARG00020023467 #20	JAKMIP1 (ENSOARG00020023163) #21	WFS1 (ENSOARG00020023129) #22	PPP2R2C (ENSOARG00020023090) #23	ENSOARG00020022932 #24	ENSOARG00020022892 #25	DMP1 (ENSOARG00020022854) #26	DSPP (ENSOARG00020022784) #27	SPARCL1 (ENSOARG00020022579) #28	NUDT9 (ENSOARG00020022482) #29	ENSOARG00020022244 #30	ENSOARG00020021968 #31	AFF1 (ENSOARG00020021386) #32	C4orf36 (ENSOARG00020021226) #33	SLC10A6 (ENSOARG00020021292) #34	PTPN13 (ENSOARG00020019325) #35	ENSOARG00020019244 #36	MAPK10 (ENSOARG00020018223) #37
Goat	MODERN SPECIES	25	OTOP1 (ENSCHIG00000019597) #8	TMEM128 (ENSCHIG00000011114) #9	LYAR (ENSCHIG00000020398) #10	ZBTB49 (ENSCHIG00000015069) #11	NSG1 (ENSCHIG00000008294) #12	STX18 (ENSCHIG00000020439)	MSX1 (ENSCHIG00000014094) #13	CYTL1 (ENSCHIG00000001722) #14	STK32B (ENSCHIG00000021477) #15	EVC2 (ENSCHIG00000014543) #16	EVC (ENSCHIG00000024455) #17	CRMP1 (ENSCHIG00000017354) #18	ENSCHIG00000008410	JAKMIP1 (ENSCHIG00000022605) #21	ENSCHIG00000014433	WFS1 (ENSCHIG00000025731) #22	PPP2R2C (ENSCHIG00000016344) #23	DMP1 (ENSCHIG00000024137) #26	DSPP (ENSCHIG00000016631) #27	SPARCL1 (ENSCHIG00000007139) #28	NUDT9 (ENSCHIG00000020346) #29	HSD17B11 (ENSCHIG00000011780)	HSD17B13 (ENSCHIG00000020775) #30	KLHL8 (ENSCHIG00000015495) #31	AFF1 (ENSCHIG00000008450) #32	C4orf36 (ENSCHIG00000020322) #33	SLC10A6 (ENSCHIG00000014126) #34	ENSCHIG00000001076	PTPN13 (ENSCHIG00000021006) #35	ENSCHIG00000013818	ENSCHIG00000003527
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000157037.a #7	ENSGT00940000159350 #8	ENSGT00390000012901 #9	ENSGT00390000003477.i #10	ENSGT00940000158750 #11	ENSGT00390000000483.b #12	ENSGT00390000014853	ENSGT00940000161623 #13	ENSGT00390000016221 #14	ENSGT00940000160490 #15	ENSGT00940000154127.A #16	ENSGT00940000154127.B #17	ENSGT01030000234527.A.a.b.b.b #18	ENSGT00390000003220 #19	ENSGT00940000153713.B.c #21	ENSGT00390000016928 #22	ENSGT00950000182864.a.b.b.a.b.a.a.b #23	ENSGT01030000234638.b.a.b.q.a.b #24	ENSGT01030000234638.b.a.b.q.a.a ##24	ENSGT00730000111375 #26	ENSGT00730000111489 #27	ENSGT00510000046787.e.a #28	ENSGT00390000017405 #29	ENSGT00940000160856	ENSGT00940000161743 #30	ENSGT00940000157583 #31	ENSGT00950000182974.a.b #32	ENSGT00390000015549 #33	ENSGT00950000182808.a.a.a.a.b #34	ENSGT00940000155133.b #35	ENSGT00390000006247.e.a
Bos	ANCESTRAL SPECIES	15	ENSGT00940000159350 #8	ENSGT00390000012901 #9	ENSGT00390000003477.i #10	ENSGT00940000158750 #11	ENSGT00390000000483.b #12	ENSGT00390000014853	ENSGT00940000161623 #13	ENSGT00390000016221 #14	ENSGT00940000160490 #15	ENSGT00940000154127.A #16	ENSGT00940000154127.B #17	ENSGT01030000234527.A.a.b.b.b #18	ENSGT00390000003220 #19	ENSGT00940000153713.B.c #21	ENSGT00940000158464.k	ENSGT00390000016928 #22	ENSGT00950000182864.a.b.b.a.b.a.a.b #23	ENSGT01030000234638.b.a.b.q.a.b #24	ENSGT01030000234638.b.a.b.q.a.a ##24	ENSGT00730000111375 #26	ENSGT00730000111489 #27	ENSGT00510000046787.e.a #28	ENSGT00390000017405 #29	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856	ENSGT00940000161743 #30	ENSGT00940000157583 #31	ENSGT00950000182974.a.b #32	ENSGT00390000015549 #33	ENSGT00950000182808.a.a.a.a.b #34	ENSGT00940000155133.b.n #35
Bos_a	ANCESTRAL SPECIES	21	ENSGT00940000159350 #8	ENSGT00390000012901 #9	ENSGT00390000003477.i #10	ENSGT00940000158750 #11	ENSGT00390000000483.b #12	ENSGT00390000014853	ENSGT00940000161623 #13	ENSGT00390000016221 #14	ENSGT00940000160490 #15	ENSGT00940000154127.A #16	ENSGT00940000154127.B #17	ENSGT01030000234527.A.a.b.b.b #18	ENSGT00390000003220 #19	ENSGT00940000153713.B.c #21	ENSGT00940000158464.k	ENSGT00390000016928 #22	ENSGT00950000182864.a.b.b.a.b.a.a.b #23	ENSGT01030000234638.b.a.b.q.a.b #24	ENSGT01030000234638.b.a.b.q.a.a ##24	ENSGT00730000111375 #26	ENSGT00730000111489 #27	ENSGT00510000046787.e.a #28	ENSGT00390000017405 #29	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856	ENSGT00940000161743 #30	ENSGT00940000157583 #31	ENSGT00950000182974.a.b #32	ENSGT00390000015549 #33	ENSGT00950000182808.a.a.a.a.b #34	ENSGT00940000155133.b.n #35
Domestic yak	MODERN SPECIES	25	LYAR (ENSBGRG00000009901) #10	ENSBGRG00000010035	ZBTB49 (ENSBGRG00000010047) #11	NSG1 (ENSBGRG00000010087) #12	STX18 (ENSBGRG00000010223)	MSX1 (ENSBGRG00000010388) #13	CYTL1 (ENSBGRG00000010429) #14	STK32B (ENSBGRG00000010525) #15	EVC2 (ENSBGRG00000010733) #16	EVC (ENSBGRG00000011517) #17	ENSBGRG00000012265	CRMP1 (ENSBGRG00000012288) #18	C4orf50 (ENSBGRG00000012490) #19	JAKMIP1 (ENSBGRG00000012631) #21	ENSBGRG00000013050	WFS1 (ENSBGRG00000013121) #22	PPP2R2C (ENSBGRG00000013226) #23	ENSBGRG00000013414 #24	ENSBGRG00000013725 ##24	DMP1 (ENSBGRG00000014603) #26	ENSBGRG00000014783 #27	SPARCL1 (ENSBGRG00000014840) #28	NUDT9 (ENSBGRG00000014966) #29	HSD17B11 (ENSBGRG00000015134)	ENSBGRG00000015430	KLHL8 (ENSBGRG00000015486) #31	AFF1 (ENSBGRG00000015861) #32	C4orf36 (ENSBGRG00000016444) #33	SLC10A6 (ENSBGRG00000016493) #34	PTPN13 (ENSBGRG00000016575) #35	ENSBGRG00000016870
Wild yak	MODERN SPECIES	1632													CRMP1 (ENSBMUG00000020375) #18	ENSBMUG00000020327 #19	JAKMIP1 (ENSBMUG00000020292) #21	WFS1 (ENSBMUG00000020171) #22	PPP2R2C (ENSBMUG00000020159) #23	ENSBMUG00000020143 ##24
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000159350 #8	ENSGT00390000012901 #9	ENSGT00390000003477.i #10	ENSGT00940000158750 #11	ENSGT00390000000483.b #12	ENSGT00390000014853	ENSGT00940000161623 #13	ENSGT00390000016221 #14	ENSGT00940000160490 #15	ENSGT00940000154127.A #16	ENSGT00940000154127.B #17	ENSGT01030000234527.A.a.b.b.b #18	ENSGT00390000003220 #19	ENSGT00940000153713.B.c #21	ENSGT00940000158464.k	ENSGT00390000016928 #22	ENSGT00950000182864.a.b.b.a.b.a.a.b #23	ENSGT01030000234638.b.a.b.q.a.b #24	ENSGT01030000234638.b.a.b.q.a.a ##24	ENSGT00730000111375 #26	ENSGT00730000111489 #27	ENSGT00510000046787.e.a #28	ENSGT00390000017405 #29	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856	ENSGT00940000161743 #30	ENSGT00940000157583 #31	ENSGT00950000182974.a.b #32	ENSGT00390000015549 #33	ENSGT00950000182808.a.a.a.a.b #34	ENSGT00940000155133.b.n.a #35
Hybrid Bos Indicus	MODERN SPECIES	25	ZBTB49 (ENSBIXG00005014310) #11	NSG1 (ENSBIXG00005014389) #12	STX18 (ENSBIXG00005005974)	MSX1 (ENSBIXG00005014501) #13	CYTL1 (ENSBIXG00005006226) #14	ENSBIXG00005002014	STK32B (ENSBIXG00005002027) #15	ENSBIXG00005014592	EVC2 (ENSBIXG00005014669) #16	ENSBIXG00005014684	EVC (ENSBIXG00005014829) #17	CRMP1 (ENSBIXG00005002160) #18	ENSBIXG00005014962 #19	JAKMIP1 (ENSBIXG00005015199) #21	ENSBIXG00005015285	WFS1 (ENSBIXG00005015314) #22	PPP2R2C (ENSBIXG00005015372) #23	ENSBIXG00005015774 #24	ENSBIXG00005016537 ##24	DMP1 (ENSBIXG00005016673) #26	ENSBIXG00005016723 #27	SPARCL1 (ENSBIXG00005007329) #28	NUDT9 (ENSBIXG00005016830) #29	ENSBIXG00005016839	HSD17B11 (ENSBIXG00005005731)	ENSBIXG00005016946	KLHL8 (ENSBIXG00005017118) #31	AFF1 (ENSBIXG00005017161) #32	C4orf36 (ENSBIXG00005017196) #33	ENSBIXG00005017214	ENSBIXG00005002799
Cow	MODERN SPECIES	25	TMEM128 (ENSBTAG00000003652) #9	LYAR (ENSBTAG00000003653) #10	ZBTB49 (ENSBTAG00000014680) #11	NSG1 (ENSBTAG00000005711) #12	ENSBTAG00000050796	STX18 (ENSBTAG00000005712)	MSX1 (ENSBTAG00000010875) #13	CYTL1 (ENSBTAG00000011163) #14	STK32B (ENSBTAG00000015409) #15	EVC2 (ENSBTAG00000004277) #16	EVC (ENSBTAG00000004287) #17	CRMP1 (ENSBTAG00000004292) #18	ENSBTAG00000021729 #19	JAKMIP1 (ENSBTAG00000011170) #21	ENSBTAG00000054994	WFS1 (ENSBTAG00000046671) #22	PPP2R2C (ENSBTAG00000020598) #23	ENSBTAG00000006508 #24	ENSBTAG00000017829 ##24	DMP1 (ENSBTAG00000019132) #26	DSPP (ENSBTAG00000045714) #27	SPARCL1 (ENSBTAG00000004094) #28	NUDT9 (ENSBTAG00000011354) #29	ENSBTAG00000052418	HSD17B11 (ENSBTAG00000006307)	HSD17B13 (ENSBTAG00000031679) #30	ENSBTAG00000047432	KLHL8 (ENSBTAG00000002455) #31	AFF1 (ENSBTAG00000018488) #32	C4orf36 (ENSBTAG00000051915) #33	ENSBTAG00000050963
American bison	MODERN SPECIES	3171		DRD5 (ENSBBBG00000018138) #7	OTOP1 (ENSBBBG00000018133) #8	TMEM128 (ENSBBBG00000018119) #9	ENSBBBG00000018099 #10	ZBTB49 (ENSBBBG00000018051) #11	NSG1 (ENSBBBG00000018037) #12	STX18 (ENSBBBG00000017995)	MSX1 (ENSBBBG00000017970) #13	CYTL1 (ENSBBBG00000017963) #14	STK32B (ENSBBBG00000017951) #15	EVC2 (ENSBBBG00000017891) #16	EVC (ENSBBBG00000017842) #17	CRMP1 (ENSBBBG00000017804) #18	JAKMIP1 (ENSBBBG00000017761) #21	WFS1 (ENSBBBG00000004354) #22	PPP2R2C (ENSBBBG00000017550) #23	ENSBBBG00000017388 #24	ENSBBBG00000017182 ##24	DMP1 (ENSBBBG00000008928) #26
Siberian musk deer	MODERN SPECIES	1273	DRD5 (ENSMMSG00000022201) #7	OTOP1 (ENSMMSG00000022207) #8	TMEM128 (ENSMMSG00000022229) #9	ENSMMSG00000022248 ##10	ZBTB49 (ENSMMSG00000022265) #11	NSG1 (ENSMMSG00000022287) #12	STX18 (ENSMMSG00000022315)	MSX1 (ENSMMSG00000022332) #13	CYTL1 (ENSMMSG00000022341) #14	STK32B (ENSMMSG00000022366) #15	EVC2 (ENSMMSG00000014469) #16	EVC (ENSMMSG00000014574) #17	CRMP1 (ENSMMSG00000014696) #18	ENSMMSG00000014897 #19	JAKMIP1 (ENSMMSG00000014962) #21	WFS1 (ENSMMSG00000015467) #22	PPP2R2C (ENSMMSG00000015500) #23	ENSMMSG00000015548 #24	DMP1 (ENSMMSG00000015722) #26	ENSMMSG00000015791 #27	SPARCL1 (ENSMMSG00000015840) #28	NUDT9 (ENSMMSG00000015898) #29	HSD17B11 (ENSMMSG00000015946)	HSD17B13 (ENSMMSG00000016012) #30	KLHL8 (ENSMMSG00000016116) #31	AFF1 (ENSMMSG00000016294) #32	C4orf36 (ENSMMSG00000016405) #33	SLC10A6 (ENSMMSG00000016456) #34	PTPN13 (ENSMMSG00000016540) #35	MAPK10 (ENSMMSG00000016767) #37	ARHGAP24 (ENSMMSG00000017490)