Amniota	ANCESTRAL SPECIES	6	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00390000003964.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Mammalia	ANCESTRAL SPECIES	6	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Theria	ANCESTRAL SPECIES	5	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT01090000260046	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Primates	ANCESTRAL SPECIES	13	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000154319.u.b #10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.u.b #10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Tarsier	MODERN SPECIES	7255										RASGRP4 (ENSTSYG00000026406)	ENSTSYG00000026837	PSMD8 (ENSTSYG00000030414)	ABI2 (ENSTSYG00000014266) #20	ENSTSYG00000036876	RAPH1 (ENSTSYG00000014267) #21	CD28 (ENSTSYG00000030494) #22	CTLA4 (ENSTSYG00000009741) #23	ICOS (ENSTSYG00000003786) #24	ADHFE1 (ENSTSYG00000008368)	VXN (ENSTSYG00000005969)	MYBL1 (ENSTSYG00000003129)	VCPIP1 (ENSTSYG00000003156)	SGK3 (ENSTSYG00000011779)	MCMDC2 (ENSTSYG00000011780)	TCF24 (ENSTSYG00000034706)	PPP1R42 (ENSTSYG00000012159)	ENSTSYG00000035299	COPS5 (ENSTSYG00000012162)	CSPP1 (ENSTSYG00000007214)	ENSTSYG00000032447
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.u.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00860000133854 #9	ENSGT00950000183314	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a #29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00860000133854 #9	ENSGT00940000154319.u.a.d ##10	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.a.b ##29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Gibbon	MODERN SPECIES	14	BMPR2 (ENSNLEG00000007004) #13	ENSNLEG00000007009	ENSNLEG00000029928 #14	ENSNLEG00000027717	ICA1L (ENSNLEG00000007012) #15	WDR12 (ENSNLEG00000007018) #16	CARF (ENSNLEG00000007026) #17	NBEAL1 (ENSNLEG00000007032) #18	ENSNLEG00000029450	CYP20A1 (ENSNLEG00000035097) #19	ENSNLEG00000007043 #20	RAPH1 (ENSNLEG00000007048) #21	ENSNLEG00000030127	ENSNLEG00000035533	ENSNLEG00000029125	CD28 (ENSNLEG00000007057) #22	CTLA4 (ENSNLEG00000007059) #23	ICOS (ENSNLEG00000007065) #24	ENSNLEG00000007066 #25	ENSNLEG00000036209 #25	NRP2 (ENSNLEG00000007071) #26	INO80D (ENSNLEG00000032256) #27	NDUFS1 (ENSNLEG00000007090) #28	ENSNLEG00000007098 ##29	ENSNLEG00000033131	ZDBF2 (ENSNLEG00000007100) #31	ADAM23 (ENSNLEG00000007102) #32	FAM237A (ENSNLEG00000007112) #33	DYTN (ENSNLEG00000007113) #34	MDH1B (ENSNLEG00000007114) #35	FASTKD2 (ENSNLEG00000007116) #36
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.a.b ##29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000154319.u.a.d ##10	ENSGT00940000154319.u.b.a.a #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00610000087446	ENSGT00390000015889.j	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.a.b.a.a ##29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00610000087446	ENSGT00390000015889.j	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.a.b.a.a ##29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Pan	ANCESTRAL SPECIES	12	ENSGT00860000133854 #9	ENSGT00940000154319.u.b.a.a #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00610000087446	ENSGT00390000015889.j	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.a.b.a.a ##29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Chimpanzee	MODERN SPECIES	15	ENSPTRG00000012817 #10	NOP58 (ENSPTRG00000012818) #11	ENSPTRG00000047517	BMPR2 (ENSPTRG00000029076) #13	FAM117B (ENSPTRG00000012821) #14	ENSPTRG00000040928	ENSPTRG00000044806	ICA1L (ENSPTRG00000012822) #15	WDR12 (ENSPTRG00000012823) #16	CARF (ENSPTRG00000012824) #17	NBEAL1 (ENSPTRG00000012828) #18	ENSPTRG00000012829 #19	ABI2 (ENSPTRG00000012830) #20	RAPH1 (ENSPTRG00000012831) #21	ENSPTRG00000043246	CD28 (ENSPTRG00000012833) #22	ENSPTRG00000051964	CTLA4 (ENSPTRG00000044793) #23	ICOS (ENSPTRG00000012837) #24	PARD3B (ENSPTRG00000012838) #25	NRP2 (ENSPTRG00000012839) #26	INO80D (ENSPTRG00000012841) #27	NDUFS1 (ENSPTRG00000012842) #28	EEF1B2 (ENSPTRG00000049619) ##29	CMKLR2 (ENSPTRG00000012844) #30	ENSPTRG00000052002	ZDBF2 (ENSPTRG00000029052) #31	ADAM23 (ENSPTRG00000012846) #32	FAM237A (ENSPTRG00000045763) #33	DYTN (ENSPTRG00000042355) #34	MDH1B (ENSPTRG00000012847) #35
Bonobo	MODERN SPECIES	15	ENSPPAG00000039551	ENSPPAG00000039520 #10	NOP58 (ENSPPAG00000036626) #11	ENSPPAG00000043823	BMPR2 (ENSPPAG00000017269) #13	FAM117B (ENSPPAG00000041596) #14	ENSPPAG00000027947	ICA1L (ENSPPAG00000037623) #15	ENSPPAG00000033697 #16	CARF (ENSPPAG00000042960) #17	NBEAL1 (ENSPPAG00000040934) #18	CYP20A1 (ENSPPAG00000040724) #19	ABI2 (ENSPPAG00000030582) #20	RAPH1 (ENSPPAG00000024317) #21	ENSPPAG00000032675	CD28 (ENSPPAG00000034998) #22	CTLA4 (ENSPPAG00000041661) #23	ICOS (ENSPPAG00000037117) #24	PARD3B (ENSPPAG00000033958) #25	NRP2 (ENSPPAG00000041062) #26	ENSPPAG00000040957	INO80D (ENSPPAG00000017120) #27	NDUFS1 (ENSPPAG00000032284) #28	ENSPPAG00000033754 ##29	ENSPPAG00000031391	ZDBF2 (ENSPPAG00000038901) #31	ADAM23 (ENSPPAG00000030147) #32	FAM237A (ENSPPAG00000028915) #33	DYTN (ENSPPAG00000008787) #34	ENSPPAG00000031338 #35	FASTKD2 (ENSPPAG00000021300) #36
Human	MODERN SPECIES	11	CDK15 (ENSG00000138395) #7	FZD7 (ENSG00000155760) #8	KIAA2012 (ENSG00000182329) #9	SUMO1 (ENSG00000116030) ##10	NOP58 (ENSG00000055044) #11	BMPR2 (ENSG00000204217) #13	ENSG00000289490 #12	FAM117B (ENSG00000138439) #14	ICA1L (ENSG00000163596) #15	WDR12 (ENSG00000138442) #16	CARF (ENSG00000138380) #17	NBEAL1 (ENSG00000144426) #18	CYP20A1 (ENSG00000119004) #19	ABI2 (ENSG00000138443) #20	RAPH1 (ENSG00000173166) #21	CD28 (ENSG00000178562) #22	CTLA4 (ENSG00000163599) #23	ICOS (ENSG00000163600) #24	PARD3B (ENSG00000116117) #25	NRP2 (ENSG00000118257) #26	INO80D (ENSG00000114933) #27	NDUFS1 (ENSG00000023228) #28	EEF1B2 (ENSG00000114942) ##29	CMKLR2 (ENSG00000183671) #30	ZDBF2 (ENSG00000204186) #31	ADAM23 (ENSG00000114948) #32	FAM237A (ENSG00000235118) #33	DYTN (ENSG00000232125) #34	MDH1B (ENSG00000138400) #35	FASTKD2 (ENSG00000118246) #36	CPO (ENSG00000144410) #37
Gorilla	MODERN SPECIES	15	ENSGGOG00000007480	ENSGGOG00000026439 #10	ENSGGOG00000014545 #11	ENSGGOG00000042085	BMPR2 (ENSGGOG00000010989) #13	ENSGGOG00000014813 #14	ENSGGOG00000016194	ICA1L (ENSGGOG00000017038) #15	WDR12 (ENSGGOG00000026073) #16	ENSGGOG00000036442 #17	NBEAL1 (ENSGGOG00000015453) #18	CYP20A1 (ENSGGOG00000007044) #19	ABI2 (ENSGGOG00000016384) #20	RAPH1 (ENSGGOG00000016399) #21	ENSGGOG00000023735	CD28 (ENSGGOG00000041735) #22	ENSGGOG00000039900	CTLA4 (ENSGGOG00000007961) #23	ICOS (ENSGGOG00000014097) #24	PARD3B (ENSGGOG00000034911) #25	NRP2 (ENSGGOG00000009537) #26	INO80D (ENSGGOG00000015570) #27	NDUFS1 (ENSGGOG00000001513) #28	EEF1B2 (ENSGGOG00000007002) ##29	ENSGGOG00000042195	ZDBF2 (ENSGGOG00000023142) #31	ENSGGOG00000024971	ADAM23 (ENSGGOG00000012509) #32	FAM237A (ENSGGOG00000037017) #33	DYTN (ENSGGOG00000027242) #34	MDH1B (ENSGGOG00000002059) #35
Orangutan	MODERN SPECIES	15	CDK15 (ENSPPYG00000013079) #7	FZD7 (ENSPPYG00000013080) #8	KIAA2012 (ENSPPYG00000013082) #9	SUMO1 (ENSPPYG00000013083) #10	NOP58 (ENSPPYG00000013084) #11	BMPR2 (ENSPPYG00000013085) #13	FAM117B (ENSPPYG00000037197) #14	ENSPPYG00000034941	ICA1L (ENSPPYG00000013088) #15	WDR12 (ENSPPYG00000040830) #16	CARF (ENSPPYG00000013090) #17	NBEAL1 (ENSPPYG00000013092) #18	CYP20A1 (ENSPPYG00000013093) #19	ABI2 (ENSPPYG00000013094) #20	RAPH1 (ENSPPYG00000013096) #21	CD28 (ENSPPYG00000039922) #22	CTLA4 (ENSPPYG00000036623) #23	ICOS (ENSPPYG00000013100) #24	PARD3B (ENSPPYG00000013101) #25	NRP2 (ENSPPYG00000013102) #26	INO80D (ENSPPYG00000013104) #27	ENSPPYG00000038957	NDUFS1 (ENSPPYG00000013106) #28	EEF1B2 (ENSPPYG00000013107) ##29	CMKLR2 (ENSPPYG00000013108) #30	ZDBF2 (ENSPPYG00000013109) #31	ADAM23 (ENSPPYG00000013110) #32	FAM237A (ENSPPYG00000036282) #33	DYTN (ENSPPYG00000031262) #34	MDH1B (ENSPPYG00000013111) #35	FASTKD2 (ENSPPYG00000013112) #36
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00860000133854 #9	ENSGT00950000183314	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Rhinopithecus	ANCESTRAL SPECIES	73		ENSGT00390000000685.o.a	ENSGT00860000133854 #9	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00390000015060.n	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b.c #35
Golden snub-nosed monkey	MODERN SPECIES	2758									CARF (ENSRROG00000045180) #17	NBEAL1 (ENSRROG00000015491) #18	CYP20A1 (ENSRROG00000040044) #19	ABI2 (ENSRROG00000040959) #20	RAPH1 (ENSRROG00000010278) #21	ENSRROG00000006311	ENSRROG00000034411	CD28 (ENSRROG00000043826) #22	ENSRROG00000034095	CTLA4 (ENSRROG00000028565) #23	ICOS (ENSRROG00000038288) #24	PARD3B (ENSRROG00000013717) #25	NRP2 (ENSRROG00000040911) #26	INO80D (ENSRROG00000003571) #27	NDUFS1 (ENSRROG00000033953) #28	ENSRROG00000041925 #29	CMKLR2 (ENSRROG00000015659) #30	ENSRROG00000038360	ZDBF2 (ENSRROG00000032109) #31	ADAM23 (ENSRROG00000036437) #32
Black snub-nosed monkey	MODERN SPECIES	765	ENSRBIG00000006864	ENSRBIG00000039264	KIAA2012 (ENSRBIG00000040519) #9	ENSRBIG00000000040	NOP58 (ENSRBIG00000043924) #11	ENSRBIG00000041839	BMPR2 (ENSRBIG00000029562) #13	FAM117B (ENSRBIG00000041167) #14	ICA1L (ENSRBIG00000004725) #15	ENSRBIG00000026475 #16	CARF (ENSRBIG00000040577) #17	NBEAL1 (ENSRBIG00000037739) #18	CYP20A1 (ENSRBIG00000021309) #19	ABI2 (ENSRBIG00000029760) #20	RAPH1 (ENSRBIG00000043732) #21	CD28 (ENSRBIG00000030086) #22	ENSRBIG00000031889	CTLA4 (ENSRBIG00000039535) #23	ICOS (ENSRBIG00000030423) #24
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000183314	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35
Vervet Monkey	MODERN SPECIES	1	CDK15 (ENSCSAG00000010541) #7	FZD7 (ENSCSAG00000018768) #8	ENSCSAG00000010526 #9	ENSCSAG00000010514 #9	ENSCSAG00000010504	NOP58 (ENSCSAG00000010496) #11	BMPR2 (ENSCSAG00000010485) #13	FAM117B (ENSCSAG00000010474) #14	ICA1L (ENSCSAG00000010466) #15	ENSCSAG00000010442 #16	CARF (ENSCSAG00000010380) #17	NBEAL1 (ENSCSAG00000010364) #18	CYP20A1 (ENSCSAG00000010341) #19	ABI2 (ENSCSAG00000010327) #20	RAPH1 (ENSCSAG00000010318) #21	CD28 (ENSCSAG00000010308) #22	ENSCSAG00000010293	CTLA4 (ENSCSAG00000010288) #23	ICOS (ENSCSAG00000010281) #24	PARD3B (ENSCSAG00000010270) #25	NRP2 (ENSCSAG00000010258) #26	INO80D (ENSCSAG00000010251) #27	NDUFS1 (ENSCSAG00000010247) #28	ENSCSAG00000010238 ##29	CMKLR2 (ENSCSAG00000018769) #30	ZDBF2 (ENSCSAG00000010233) #31	ENSCSAG00000010220	ADAM23 (ENSCSAG00000010198) #32	DYTN (ENSCSAG00000010181) #34	MDH1B (ENSCSAG00000010163) #35	FASTKD2 (ENSCSAG00000010158) #36
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000183314	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00390000000685.o.a	ENSGT00860000133854 #9	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552.b #21	ENSGT00530000063873.A #22	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a.b	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Pig-tailed macaque	MODERN SPECIES	409	FZD7 (ENSMNEG00000026832) #8	ENSMNEG00000029108	KIAA2012 (ENSMNEG00000030605) #9	ENSMNEG00000041929 #10	NOP58 (ENSMNEG00000012760) #11	BMPR2 (ENSMNEG00000032368) #13	FAM117B (ENSMNEG00000033073) #14	ICA1L (ENSMNEG00000039428) #15	ENSMNEG00000027411 #16	CARF (ENSMNEG00000033105) #17	NBEAL1 (ENSMNEG00000044041) #18	CYP20A1 (ENSMNEG00000045164) #19	ABI2 (ENSMNEG00000028519) #20	RAPH1 (ENSMNEG00000030823) #21	ENSMNEG00000036304	CD28 (ENSMNEG00000033642) #22	ENSMNEG00000030427	CTLA4 (ENSMNEG00000043834) #23	ICOS (ENSMNEG00000029598) #24	PARD3B (ENSMNEG00000040103) #25	ENSMNEG00000031020	NRP2 (ENSMNEG00000039082) #26	INO80D (ENSMNEG00000032459) #27	NDUFS1 (ENSMNEG00000032822) #28	ENSMNEG00000030060 #29	ZDBF2 (ENSMNEG00000031863) #31	ENSMNEG00000028225	ADAM23 (ENSMNEG00000027959) #32	FAM237A (ENSMNEG00000032870) #33	DYTN (ENSMNEG00000038040) #34	MDH1B (ENSMNEG00000043559) #35
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552.b #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Rhesus	MODERN SPECIES	3	FZD7 (ENSMMUG00000045285) #8	KIAA2012 (ENSMMUG00000001883) #9	SUMO1 (ENSMMUG00000005240) #10	NOP58 (ENSMMUG00000000582) #11	ENSMMUG00000061021	BMPR2 (ENSMMUG00000009009) #13	FAM117B (ENSMMUG00000021152) #14	ICA1L (ENSMMUG00000017364) #15	ENSMMUG00000059397	WDR12 (ENSMMUG00000043068) #16	CARF (ENSMMUG00000006418) #17	NBEAL1 (ENSMMUG00000006420) #18	CYP20A1 (ENSMMUG00000005971) #19	ABI2 (ENSMMUG00000000312) #20	RAPH1 (ENSMMUG00000000314) #21	CD28 (ENSMMUG00000057214) #22	CTLA4 (ENSMMUG00000015903) #23	ICOS (ENSMMUG00000002648) #24	ENSMMUG00000052080	PARD3B (ENSMMUG00000014814) #25	ENSMMUG00000055410	NRP2 (ENSMMUG00000020052) #26	INO80D (ENSMMUG00000001053) #27	ENSMMUG00000054550	NDUFS1 (ENSMMUG00000016788) #28	EEF1B2 (ENSMMUG00000001054) #29	CMKLR2 (ENSMMUG00000008334) #30	ZDBF2 (ENSMMUG00000031276) #31	ADAM23 (ENSMMUG00000011641) #32	FAM237A (ENSMMUG00000052987) #33	DYTN (ENSMMUG00000048288) #34
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000055450	BMPR2 (ENSMFAG00000032075) #13	FAM117B (ENSMFAG00000045349) #14	ICA1L (ENSMFAG00000046002) #15	ENSMFAG00000055750	ENSMFAG00000048371	ENSMFAG00000044326 #16	CARF (ENSMFAG00000042636) #17	NBEAL1 (ENSMFAG00000032529) #18	ENSMFAG00000065796	CYP20A1 (ENSMFAG00000036924) #19	ENSMFAG00000048556	ABI2 (ENSMFAG00000031286) #20	ENSMFAG00000003148 #21	ENSMFAG00000062324 #21	CD28 (ENSMFAG00000003864) #22	CTLA4 (ENSMFAG00000004047) #23	ICOS (ENSMFAG00000053159) #24	PARD3B (ENSMFAG00000043904) #25	NRP2 (ENSMFAG00000038385) #26	ENSMFAG00000053377	INO80D (ENSMFAG00000001629) #27	NDUFS1 (ENSMFAG00000039201) #28	ENSMFAG00000038364 #29	CMKLR2 (ENSMFAG00000013528) #30	ZDBF2 (ENSMFAG00000044616) #31	ADAM23 (ENSMFAG00000030094) #32	FAM237A (ENSMFAG00000031105) #33	DYTN (ENSMFAG00000044098) #34	MDH1B (ENSMFAG00000035811) #35	ENSMFAG00000049460
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000183314	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35
Olive baboon	MODERN SPECIES	1	FZD7 (ENSPANG00000010400) #8	KIAA2012 (ENSPANG00000025945) #9	ENSPANG00000040608	ENSPANG00000031030 #10	NOP58 (ENSPANG00000005211) #11	BMPR2 (ENSPANG00000006512) #13	ENSPANG00000042529	FAM117B (ENSPANG00000009087) #14	ICA1L (ENSPANG00000017467) #15	ENSPANG00000008983 #16	ENSPANG00000008982 #17	NBEAL1 (ENSPANG00000000692) #18	CYP20A1 (ENSPANG00000002439) #19	ABI2 (ENSPANG00000023238) #20	RAPH1 (ENSPANG00000018186) #21	CD28 (ENSPANG00000011488) #22	CTLA4 (ENSPANG00000007100) #23	ICOS (ENSPANG00000010251) #24	ENSPANG00000042490	PARD3B (ENSPANG00000017315) #25	NRP2 (ENSPANG00000011487) #26	INO80D (ENSPANG00000005753) #27	NDUFS1 (ENSPANG00000019101) #28	ENSPANG00000011248 #29	CMKLR2 (ENSPANG00000007301) #30	ZDBF2 (ENSPANG00000023236) #31	ENSPANG00000032033	ADAM23 (ENSPANG00000025872) #32	FAM237A (ENSPANG00000032174) #33	DYTN (ENSPANG00000011028) #34	MDH1B (ENSPANG00000022792) #35
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000183314	ENSGT00390000000685.o.a	ENSGT00940000154319.u.b.a.b #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b.m.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.a.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35
Drill	MODERN SPECIES	1089											NBEAL1 (ENSMLEG00000032708) #18	CYP20A1 (ENSMLEG00000034377) #19	ABI2 (ENSMLEG00000040577) #20	RAPH1 (ENSMLEG00000033969) #21	ENSMLEG00000004995	CD28 (ENSMLEG00000037603) #22	CTLA4 (ENSMLEG00000037639) #23	ICOS (ENSMLEG00000007807) #24	PARD3B (ENSMLEG00000031270) #25	ENSMLEG00000040986	NRP2 (ENSMLEG00000035732) #26	INO80D (ENSMLEG00000039669) #27
Sooty mangabey	MODERN SPECIES	570	KIAA2012 (ENSCATG00000034304) #9	ENSCATG00000033452	ENSCATG00000035585 #10	NOP58 (ENSCATG00000037684) #11	BMPR2 (ENSCATG00000033192) #13	ENSCATG00000033526	FAM117B (ENSCATG00000033570) #14	ICA1L (ENSCATG00000036911) #15	ENSCATG00000035496 #16	CARF (ENSCATG00000035061) #17	NBEAL1 (ENSCATG00000036478) #18	CYP20A1 (ENSCATG00000034415) #19	ABI2 (ENSCATG00000038300) #20	RAPH1 (ENSCATG00000044686) #21	ENSCATG00000043923	CD28 (ENSCATG00000043017) #22	CTLA4 (ENSCATG00000036235) #23	ICOS (ENSCATG00000043591) #24	PARD3B (ENSCATG00000022284) #25	NRP2 (ENSCATG00000032051) #26	INO80D (ENSCATG00000044654) #27	NDUFS1 (ENSCATG00000037259) #28	ENSCATG00000037736 #29	ZDBF2 (ENSCATG00000037091) #31	ENSCATG00000037624	ADAM23 (ENSCATG00000043626) #32	FAM237A (ENSCATG00000036777) #33	DYTN (ENSCATG00000035275) #34	MDH1B (ENSCATG00000035467) #35	FASTKD2 (ENSCATG00000038647) #36	CPO (ENSCATG00000043384) #37
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00860000133854 #9	ENSGT00940000154319.u.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00390000010308.cb.b	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000000685.o.b.a	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00390000001455.`b.a	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.b.b ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Cebidae	ANCESTRAL SPECIES	11	ENSGT00860000133854 #9	ENSGT00940000154319.u.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00390000010308.cb.b	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000000685.o.b.a	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00390000001455.`b.a	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.b.b.a ##29	ENSGT00940000160642 #30	ENSGT00950000183014.f.a.g.b.b.b.b ##29	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35
Marmoset	MODERN SPECIES	18	CDK15 (ENSCJAG00000004892) #7	FZD7 (ENSCJAG00000038346) #8	KIAA2012 (ENSCJAG00000004923) #9	ENSCJAG00000047154 #10	NOP58 (ENSCJAG00000004985) #11	BMPR2 (ENSCJAG00000005066) #13	FAM117B (ENSCJAG00000047724) #14	ICA1L (ENSCJAG00000005162) #15	WDR12 (ENSCJAG00000005171) #16	CARF (ENSCJAG00000005224) #17	NBEAL1 (ENSCJAG00000031696) #18	ENSCJAG00000081284	CYP20A1 (ENSCJAG00000039360) #19	ABI2 (ENSCJAG00000005399) #20	RAPH1 (ENSCJAG00000005339) #21	CD28 (ENSCJAG00000042321) #22	CTLA4 (ENSCJAG00000005495) #23	ICOS (ENSCJAG00000005516) #24	PARD3B (ENSCJAG00000005521) #25	ENSCJAG00000076910	NRP2 (ENSCJAG00000005577) #26	ENSCJAG00000045767	INO80D (ENSCJAG00000005682) #27	NDUFS1 (ENSCJAG00000005725) #28	ENSCJAG00000005805 ##29	CMKLR2 (ENSCJAG00000077852) #30	ENSCJAG00000079037	ENSCJAG00000085853	ZDBF2 (ENSCJAG00000005812) #31	ADAM23 (ENSCJAG00000005821) #32	DYTN (ENSCJAG00000005926) #34
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00860000133854 #9	ENSGT00940000154319.u.b #10	ENSGT00940000153534.A #11	ENSGT00390000008128.c.a.a	ENSGT00940000156449 #13	ENSGT00390000010308.cb.b	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000000685.o.b.a	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00390000001455.`b.a	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.b.b.a ##29	ENSGT00950000183014.f.a.g.b.b.b.b ##29	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Bolivian squirrel monkey	MODERN SPECIES	56	KIAA2012 (ENSSBOG00000034494) #9	ENSSBOG00000030624 #10	NOP58 (ENSSBOG00000020494) #11	ENSSBOG00000029881	BMPR2 (ENSSBOG00000025318) #13	ENSSBOG00000016073 #14	ICA1L (ENSSBOG00000032973) #15	WDR12 (ENSSBOG00000015132) #16	CARF (ENSSBOG00000032523) #17	NBEAL1 (ENSSBOG00000032563) #18	ENSSBOG00000030482	CYP20A1 (ENSSBOG00000025384) #19	ABI2 (ENSSBOG00000031443) #20	RAPH1 (ENSSBOG00000036069) #21	ENSSBOG00000030839	CD28 (ENSSBOG00000032327) #22	ENSSBOG00000030167	CTLA4 (ENSSBOG00000034817) #23	ICOS (ENSSBOG00000000744) #24	PARD3B (ENSSBOG00000029267) #25	NRP2 (ENSSBOG00000035290) #26	ENSSBOG00000034794	INO80D (ENSSBOG00000020878) #27	NDUFS1 (ENSSBOG00000028426) #28	ENSSBOG00000036258 ##29	ZDBF2 (ENSSBOG00000011111) #31	ADAM23 (ENSSBOG00000001918) #32	FAM237A (ENSSBOG00000033809) #33	DYTN (ENSSBOG00000026100) #34	MDH1B (ENSSBOG00000029880) #35	FASTKD2 (ENSSBOG00000029513) #36
Capuchin	MODERN SPECIES	101	ENSCCAG00000036402	NOP58 (ENSCCAG00000021573) #11	ENSCCAG00000029316	BMPR2 (ENSCCAG00000025039) #13	ENSCCAG00000026090	FAM117B (ENSCCAG00000031732) #14	ICA1L (ENSCCAG00000027883) #15	WDR12 (ENSCCAG00000005461) #16	CARF (ENSCCAG00000019881) #17	NBEAL1 (ENSCCAG00000021158) #18	ENSCCAG00000031449	CYP20A1 (ENSCCAG00000036341) #19	ABI2 (ENSCCAG00000027705) #20	RAPH1 (ENSCCAG00000029188) #21	ENSCCAG00000031812	CD28 (ENSCCAG00000035864) #22	CTLA4 (ENSCCAG00000029978) #23	ICOS (ENSCCAG00000019210) #24	PARD3B (ENSCCAG00000034949) #25	NRP2 (ENSCCAG00000026361) #26	ENSCCAG00000029458	LSM5 (ENSCCAG00000032792)	INO80D (ENSCCAG00000028441) #27	NDUFS1 (ENSCCAG00000021875) #28	ENSCCAG00000033644 ##29	ENSCCAG00000029547	ZDBF2 (ENSCCAG00000026606) #31	ADAM23 (ENSCCAG00000031476) #32	FAM237A (ENSCCAG00000025434) #33	DYTN (ENSCCAG00000036386) #34
Mas night monkey	MODERN SPECIES	357	KIAA2012 (ENSANAG00000029179) #9	ENSANAG00000033069 #10	NOP58 (ENSANAG00000037044) #11	ENSANAG00000037788	BMPR2 (ENSANAG00000029511) #13	ENSANAG00000029164	FAM117B (ENSANAG00000032237) #14	ICA1L (ENSANAG00000036249) #15	WDR12 (ENSANAG00000030065) #16	CARF (ENSANAG00000032508) #17	NBEAL1 (ENSANAG00000029269) #18	ENSANAG00000023562	CYP20A1 (ENSANAG00000026608) #19	ABI2 (ENSANAG00000037183) #20	RAPH1 (ENSANAG00000037926) #21	CD28 (ENSANAG00000027528) #22	CTLA4 (ENSANAG00000027709) #23	ICOS (ENSANAG00000027294) #24	ENSANAG00000037162	ENSANAG00000037079	PARD3B (ENSANAG00000024698) #25	NRP2 (ENSANAG00000033490) #26	ENSANAG00000037758	INO80D (ENSANAG00000029568) #27	NDUFS1 (ENSANAG00000020079) #28	ENSANAG00000024356 ##29	ZDBF2 (ENSANAG00000020305) #31	ADAM23 (ENSANAG00000035087) #32	FAM237A (ENSANAG00000024386) #33	DYTN (ENSANAG00000031986) #34	MDH1B (ENSANAG00000008683) #35
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00390000001413.b	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Coquerels sifaka	MODERN SPECIES	94	SUMO1 (ENSPCOG00000006748) ##10	ENSPCOG00000006096 #11	ENSPCOG00000024395	ENSPCOG00000017531	BMPR2 (ENSPCOG00000019341) #13	ENSPCOG00000023341	ENSPCOG00000025609	FAM117B (ENSPCOG00000017335) #14	ICA1L (ENSPCOG00000027153) #15	WDR12 (ENSPCOG00000020334) #16	CARF (ENSPCOG00000016952) #17	NBEAL1 (ENSPCOG00000017923) #18	CYP20A1 (ENSPCOG00000025265) #19	ABI2 (ENSPCOG00000024066) #20	RAPH1 (ENSPCOG00000019487) #21	CD28 (ENSPCOG00000018083) #22	CTLA4 (ENSPCOG00000027784) #23	ICOS (ENSPCOG00000024779) #24
Greater bamboo lemur	MODERN SPECIES	388																CD28 (ENSPSMG00000022341) #22	ENSPSMG00000022328	CTLA4 (ENSPSMG00000022319) #23	ICOS (ENSPSMG00000022309) #24	PARD3B (ENSPSMG00000022181) #25	NRP2 (ENSPSMG00000021719) #26	INO80D (ENSPSMG00000021497) #27	NDUFS1 (ENSPSMG00000021383) #28	EEF1B2 (ENSPSMG00000021215) ##29	CMKLR2 (ENSPSMG00000021198) #30
Mouse lemur	MODERN SPECIES	30	ENSMICG00000003539 #11	ENSMICG00000007114	BMPR2 (ENSMICG00000004432) #13	ENSMICG00000031997	FAM117B (ENSMICG00000042296) #14	SLC16A14 (ENSMICG00000010609)	FBXO36 (ENSMICG00000034045)	ICA1L (ENSMICG00000002701) #15	ENSMICG00000044580 #16	CARF (ENSMICG00000011943) #17	ENSMICG00000026752	NBEAL1 (ENSMICG00000003736) #18	CYP20A1 (ENSMICG00000010806) #19	ABI2 (ENSMICG00000048062) #20	RAPH1 (ENSMICG00000001085) #21	CD28 (ENSMICG00000044645) #22	CTLA4 (ENSMICG00000032206) #23	ICOS (ENSMICG00000037046) #24	PARD3B (ENSMICG00000009358) #25	NRP2 (ENSMICG00000009376) #26	ENSMICG00000044290	INO80D (ENSMICG00000010590) #27	NDUFS1 (ENSMICG00000010601) #28	EEF1B2 (ENSMICG00000047922) ##29	ZDBF2 (ENSMICG00000044925) #31	ADAM23 (ENSMICG00000009477) #32	FAM237A (ENSMICG00000044768) #33	DYTN (ENSMICG00000027944) #34	MDH1B (ENSMICG00000009487) #35	FASTKD2 (ENSMICG00000026515) #36	CPO (ENSMICG00000015370) #37
Bushbaby	MODERN SPECIES	128	FZD7 (ENSOGAG00000032455) #8	ENSOGAG00000007416 #9	ENSOGAG00000008508 #9	ENSOGAG00000030345 ##10	NOP58 (ENSOGAG00000003906) #11	BMPR2 (ENSOGAG00000007765) #13	FAM117B (ENSOGAG00000001497) #14	ICA1L (ENSOGAG00000001500) #15	WDR12 (ENSOGAG00000006573) #16	CARF (ENSOGAG00000032187) #17	NBEAL1 (ENSOGAG00000015089) #18	CYP20A1 (ENSOGAG00000015164) #19	ENSOGAG00000033059	ABI2 (ENSOGAG00000011602) #20	RAPH1 (ENSOGAG00000015099) #21	CD28 (ENSOGAG00000012567) #22	CTLA4 (ENSOGAG00000002578) #23	PARD3B (ENSOGAG00000007396) #25	NRP2 (ENSOGAG00000007405) #26	INO80D (ENSOGAG00000005756) #27	NDUFS1 (ENSOGAG00000011226) #28	EEF1B2 (ENSOGAG00000011229) ##29	CMKLR2 (ENSOGAG00000011232) #30	ENSOGAG00000031172	ZDBF2 (ENSOGAG00000016996) #31	ENSOGAG00000031644	ADAM23 (ENSOGAG00000016997) #32	DYTN (ENSOGAG00000027434) #34	MDH1B (ENSOGAG00000017006) #35	FASTKD2 (ENSOGAG00000017008) #36	CPO (ENSOGAG00000017012) #37
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Tree shrew	MODERN SPECIES	4144																CD28 (ENSTBEG00000002610) #22	CTLA4 (ENSTBEG00000003225) #23
Glires	ANCESTRAL SPECIES	14	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041.ob #18	ENSGT00940000155041.nb #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37	ENSGT00940000155235
Rabbit	MODERN SPECIES	18	ENSOCUG00000016611	KIAA2012 (ENSOCUG00000003626) #9	ENSOCUG00000037823 ##10	NOP58 (ENSOCUG00000003631) #11	BMPR2 (ENSOCUG00000001971) #13	ENSOCUG00000006347 #14	ENSOCUG00000030693 #14	ENSOCUG00000010497 #15	WDR12 (ENSOCUG00000002961) #16	CARF (ENSOCUG00000005335) #17	ENSOCUG00000027134	NBEAL1 (ENSOCUG00000008716) #18	CYP20A1 (ENSOCUG00000008054) #19	ENSOCUG00000008062 #20	ENSOCUG00000016722 #21	CD28 (ENSOCUG00000016134) #22	ENSOCUG00000030918	CTLA4 (ENSOCUG00000017274) #23	ICOS (ENSOCUG00000001858) #24	PARD3B (ENSOCUG00000007959) #25	NRP2 (ENSOCUG00000007978) #26	INO80D (ENSOCUG00000014786) #27	ENSOCUG00000009848 ##29	NDUFS1 (ENSOCUG00000012368) #28	CMKLR2 (ENSOCUG00000012384) #30	ENSOCUG00000024602	ENSOCUG00000009421 #31	ADAM23 (ENSOCUG00000010659) #32	DYTN (ENSOCUG00000021490) #34	MDH1B (ENSOCUG00000010506) #35	ENSOCUG00000010515 #36
Pika	MODERN SPECIES	5940																CD28 (ENSOPRG00000011914) #22
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Muroidea	ANCESTRAL SPECIES	20	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Golden Hamster	MODERN SPECIES	640	Cdk15 (ENSMAUG00000017599) #7	Fzd7 (ENSMAUG00000010411) #8	ENSMAUG00000001003 #9	Sumo1 (ENSMAUG00000011639) ##10	Nop58 (ENSMAUG00000009734) #11	Bmpr2 (ENSMAUG00000009115) #13	Fam117b (ENSMAUG00000017770) #14	Ica1l (ENSMAUG00000013926) #15	Wdr12 (ENSMAUG00000001279) #16	Carf (ENSMAUG00000009693) #17	ENSMAUG00000007926 #18	ENSMAUG00000001805 #18	ENSMAUG00000007020 #19	Abi2 (ENSMAUG00000016724) #20	ENSMAUG00000008616 #21	Cd28 (ENSMAUG00000020132) #22	Ctla4 (ENSMAUG00000017208) #23	Icos (ENSMAUG00000019187) #24	Pard3b (ENSMAUG00000019516) #25	Nrp2 (ENSMAUG00000020662) #26	Ino80d (ENSMAUG00000012087) #27	ENSMAUG00000017015 #28	Eef1b2 (ENSMAUG00000011478) ##29	Cmklr2 (ENSMAUG00000009931) #30	Zdbf2 (ENSMAUG00000017491) #31	Adam23 (ENSMAUG00000012410) #32	Dytn (ENSMAUG00000021422) #34	Mdh1b (ENSMAUG00000016431) #35	Fastkd2 (ENSMAUG00000009136) #36	Klf7 (ENSMAUG00000022037)	Creb1 (ENSMAUG00000018215)
Chinese hamster chok1gshd	MODERN SPECIES	1	Cdk15 (ENSCGRG00001018439) #7	Fzd7 (ENSCGRG00001010812) #8	Gm973 (ENSCGRG00001017041) #9	ENSCGRG00001017267 ##10	Nop58 (ENSCGRG00001017869) #11	ENSCGRG00001009737	Bmpr2 (ENSCGRG00001020694) #13	Fam117b (ENSCGRG00001020456) #14	Ica1l (ENSCGRG00001018928) #15	WDR12 (ENSCGRG00001016494) #16	Carf (ENSCGRG00001016848) #17	Nbeal1 (ENSCGRG00001018313) #18	Cyp20a1 (ENSCGRG00001018508) #19	Abi2 (ENSCGRG00001017572) #20	Raph1 (ENSCGRG00001019075) #21	Cd28 (ENSCGRG00001021553) #22	Ctla4 (ENSCGRG00001017244) #23	Icos (ENSCGRG00001016804) #24	Pard3b (ENSCGRG00001023180) #25	Nrp2 (ENSCGRG00001001140) #26	Ino80d (ENSCGRG00001020225) #27	Ndufs1 (ENSCGRG00001018185) #28	Eef1b2 (ENSCGRG00001017503) ##29	Cmklr2 (ENSCGRG00001010463) #30	Zdbf2 (ENSCGRG00001018156) #31	Adam23 (ENSCGRG00001021362) #32	Gm39653 (ENSCGRG00001017288) #33	Dytn (ENSCGRG00001017611) #34	Mdh1b (ENSCGRG00001017642) #35	Fastkd2 (ENSCGRG00001020432) #36	Klf7 (ENSCGRG00001018794)
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Prairie vole	MODERN SPECIES	354	ENSMOCG00000004043	Fam124b (ENSMOCG00000017149)	Cul3 (ENSMOCG00000012013)	Slc19a3 (ENSMOCG00000013366)	ENSMOCG00000015799	Daw1 (ENSMOCG00000014056)	Sphkap (ENSMOCG00000010348)	Pid1 (ENSMOCG00000022904)	Dner (ENSMOCG00000020102)	Trip12 (ENSMOCG00000021899)	Fbxo36 (ENSMOCG00000015360)	Slc16a14 (ENSMOCG00000006969)	Nbeal1 (ENSMOCG00000015319) #18	Abi2 (ENSMOCG00000013762) #20	Raph1 (ENSMOCG00000016577) #21	Cd28 (ENSMOCG00000003240) #22	Ctla4 (ENSMOCG00000018484) #23	ENSMOCG00000017292	Icos (ENSMOCG00000008578) #24	Pard3b (ENSMOCG00000021107) #25	Nrp2 (ENSMOCG00000018160) #26	Ino80d (ENSMOCG00000022487) #27	Ndufs1 (ENSMOCG00000018918) #28	Eef1b2 (ENSMOCG00000004803) ##29	Zdbf2 (ENSMOCG00000021962) #31	Adam23 (ENSMOCG00000012227) #32	ENSMOCG00000001238	Dytn (ENSMOCG00000015652) #34	Mdh1b (ENSMOCG00000001314) #35	Fastkd2 (ENSMOCG00000019859) #36	ENSMOCG00000008631
Northern American deer mouse	MODERN SPECIES	4	Fzd7 (ENSPEMG00000008425) #8	Gm973 (ENSPEMG00000022698) #9	Sumo1 (ENSPEMG00000016027) ##10	ENSPEMG00000021263 #11	Bmpr2 (ENSPEMG00000022646) #13	Fam117b (ENSPEMG00000011700) #14	ENSPEMG00000024187	Ica1l (ENSPEMG00000021278) #15	Wdr12 (ENSPEMG00000022189) #16	Carf (ENSPEMG00000020983) #17	ENSPEMG00000028509	Nbeal1 (ENSPEMG00000029402) #18	Cyp20a1 (ENSPEMG00000023627) #19	Abi2 (ENSPEMG00000020443) #20	Raph1 (ENSPEMG00000022086) #21	Cd28 (ENSPEMG00000028537) #22	Ctla4 (ENSPEMG00000020722) #23	Icos (ENSPEMG00000015472) #24	Pard3b (ENSPEMG00000020745) #25	Nrp2 (ENSPEMG00000020944) #26	Ino80d (ENSPEMG00000020652) #27	Ndufs1 (ENSPEMG00000020453) #28	Eef1b2 (ENSPEMG00000016842) ##29	Cmklr2 (ENSPEMG00000000909) #30	Zdbf2 (ENSPEMG00000029531) #31	Adam23 (ENSPEMG00000020455) #32	Gm39653 (ENSPEMG00000029994) #33	Dytn (ENSPEMG00000020630) #34	Mdh1b (ENSPEMG00000012142) #35	Fastkd2 (ENSPEMG00000010593) #36	ENSPEMG00000029845
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Mus	ANCESTRAL SPECIES	5	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00860000135862
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00860000135862
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089.l #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00860000135862
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089.l #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00860000135862
Steppe mouse	MODERN SPECIES	44	Cdk15 (ENSMSIG00000009531) #7	Fzd7 (ENSMSIG00000009593) #8	Gm973 (ENSMSIG00000009601) #9	ENSMSIG00000009835 ##10	Nop58 (ENSMSIG00000009865) #11	Bmpr2 (ENSMSIG00000009989) #13	Fam117b (ENSMSIG00000010018) #14	Ica1l (ENSMSIG00000010027) #15	Wdr12 (ENSMSIG00000010103) #16	Carf (ENSMSIG00000010210) #17	ENSMSIG00000010287	Nbeal1 (ENSMSIG00000010304) #18	Cyp20a1 (ENSMSIG00000010618) #19	ENSMSIG00000010702 #20	Raph1 (ENSMSIG00000010756) #21	Cd28 (ENSMSIG00000011356) #22	ENSMSIG00000011370	Ctla4 (ENSMSIG00000011388) #23	Icos (ENSMSIG00000011424) #24	Pard3b (ENSMSIG00000011469) #25	ENSMSIG00000011764	Nrp2 (ENSMSIG00000011775) #26	Ino80d (ENSMSIG00000012604) #27	Ndufs1 (ENSMSIG00000012674) #28	Eef1b2 (ENSMSIG00000012804) ##29	Cmklr2 (ENSMSIG00000012880) #30	Zdbf2 (ENSMSIG00000012889) #31	ENSMSIG00000012937	Adam23 (ENSMSIG00000012957) #32	ENSMSIG00000013264	Gm39653 (ENSMSIG00000013270) #33
spretus	MODERN SPECIES		Als2 (MGP_SPRETEiJ_G0014983)	Cdk15 (MGP_SPRETEiJ_G0014984) #7	Fzd7 (MGP_SPRETEiJ_G0014985) #8	Gm973 (MGP_SPRETEiJ_G0014986) #9	Sumo1 (MGP_SPRETEiJ_G0014987) ##10	Nop58 (MGP_SPRETEiJ_G0014988) #11	Bmpr2 (MGP_SPRETEiJ_G0014989) #13	MGP_SPRETEiJ_G0014990 ##14	Ica1l (MGP_SPRETEiJ_G0014991) #15	Wdr12 (MGP_SPRETEiJ_G0014992) #16	Carf (MGP_SPRETEiJ_G0014993) #17	Nbeal1 (MGP_SPRETEiJ_G0014994) #18	Cyp20a1 (MGP_SPRETEiJ_G0014995) #19	Abi2 (MGP_SPRETEiJ_G0014996) #20	Raph1 (MGP_SPRETEiJ_G0014997) #21	Cd28 (MGP_SPRETEiJ_G0014998) #22	Ctla4 (MGP_SPRETEiJ_G0014999) #23	Icos (MGP_SPRETEiJ_G0015000) #24	Pard3b (MGP_SPRETEiJ_G0015001) #25	Nrp2 (MGP_SPRETEiJ_G0015002) #26	Ino80d (MGP_SPRETEiJ_G0015003) #27	Ndufs1 (MGP_SPRETEiJ_G0015004) #28	Eef1b2 (MGP_SPRETEiJ_G0015005) ##29	Cmklr2 (MGP_SPRETEiJ_G0015006) #30	Zdbf2 (MGP_SPRETEiJ_G0015007) #31	Adam23 (MGP_SPRETEiJ_G0015008) #32	Dytn (MGP_SPRETEiJ_G0015009) #34	Mdh1b (MGP_SPRETEiJ_G0015010) #35	Fastkd2 (MGP_SPRETEiJ_G0015011) #36	MGP_SPRETEiJ_G0015012	Klf7 (MGP_SPRETEiJ_G0015013)
Mouse	MODERN SPECIES		Als2 (ENSMUSG00000026024)	Cdk15 (ENSMUSG00000026023) #7	Fzd7 (ENSMUSG00000041075) #8	Gm973 (ENSMUSG00000047361) #9	Sumo1 (ENSMUSG00000026021) ##10	Nop58 (ENSMUSG00000026020) #11	Bmpr2 (ENSMUSG00000067336) #13	Fam117b (ENSMUSG00000041040) #14	Ica1l (ENSMUSG00000026018) #15	Wdr12 (ENSMUSG00000026019) #16	Carf (ENSMUSG00000026017) #17	Nbeal1 (ENSMUSG00000073664) #18	Cyp20a1 (ENSMUSG00000049439) #19	Abi2 (ENSMUSG00000026782) #20	Raph1 (ENSMUSG00000026014) #21	Cd28 (ENSMUSG00000026012) #22	Ctla4 (ENSMUSG00000026011) #23	Icos (ENSMUSG00000026009) #24	Pard3b (ENSMUSG00000052062) #25	Nrp2 (ENSMUSG00000025969) #26	Ino80d (ENSMUSG00000040865) #27	Ndufs1 (ENSMUSG00000025968) #28	Eef1b2 (ENSMUSG00000025967) ##29	Cmklr2 (ENSMUSG00000046856) #30	Zdbf2 (ENSMUSG00000027520) #31	Adam23 (ENSMUSG00000025964) #32	Gm39653 (ENSMUSG00000115378) #33	Dytn (ENSMUSG00000069085) #34	Mdh1b (ENSMUSG00000025963) #35	Fastkd2 (ENSMUSG00000025962) #36	Klf7 (ENSMUSG00000025959)
Ryukyu mouse	MODERN SPECIES		Als2 (MGP_CAROLIEiJ_G0014176)	Cdk15 (MGP_CAROLIEiJ_G0014177) #7	Fzd7 (MGP_CAROLIEiJ_G0014178) #8	Gm973 (MGP_CAROLIEiJ_G0014179) #9	Sumo1 (MGP_CAROLIEiJ_G0014180) ##10	Nop58 (MGP_CAROLIEiJ_G0014181) #11	Bmpr2 (MGP_CAROLIEiJ_G0014182) #13	Fam117b (MGP_CAROLIEiJ_G0014183) #14	MGP_CAROLIEiJ_G0014184 #15	MGP_CAROLIEiJ_G0014185	Carf (MGP_CAROLIEiJ_G0014186) #17	Nbeal1 (MGP_CAROLIEiJ_G0014187) #18	Cyp20a1 (MGP_CAROLIEiJ_G0014188) #19	Abi2 (MGP_CAROLIEiJ_G0014189) #20	Raph1 (MGP_CAROLIEiJ_G0014190) #21	Cd28 (MGP_CAROLIEiJ_G0014191) #22	Ctla4 (MGP_CAROLIEiJ_G0014192) #23	Icos (MGP_CAROLIEiJ_G0014193) #24	Pard3b (MGP_CAROLIEiJ_G0014194) #25	Nrp2 (MGP_CAROLIEiJ_G0014195) #26	Ino80d (MGP_CAROLIEiJ_G0014196) #27	Ndufs1 (MGP_CAROLIEiJ_G0014197) #28	Eef1b2 (MGP_CAROLIEiJ_G0014198) ##29	Cmklr2 (MGP_CAROLIEiJ_G0014199) #30	Zdbf2 (MGP_CAROLIEiJ_G0014200) #31	Adam23 (MGP_CAROLIEiJ_G0014201) #32	Dytn (MGP_CAROLIEiJ_G0014202) #34	Mdh1b (MGP_CAROLIEiJ_G0014203) #35	Fastkd2 (MGP_CAROLIEiJ_G0014204) #36	MGP_CAROLIEiJ_G0014205	Klf7 (MGP_CAROLIEiJ_G0014206)
Shrew mouse	MODERN SPECIES	18	Als2 (MGP_PahariEiJ_G0027414)	Cdk15 (MGP_PahariEiJ_G0027415) #7	Fzd7 (MGP_PahariEiJ_G0027416) #8	Gm973 (MGP_PahariEiJ_G0027417) #9	MGP_PahariEiJ_G0027418 ##10	Nop58 (MGP_PahariEiJ_G0027419) #11	Bmpr2 (MGP_PahariEiJ_G0027420) #13	Fam117b (MGP_PahariEiJ_G0027421) #14	MGP_PahariEiJ_G0027422 #15	MGP_PahariEiJ_G0027423 #16	Carf (MGP_PahariEiJ_G0027424) #17	MGP_PahariEiJ_G0027425 #18	Cyp20a1 (MGP_PahariEiJ_G0027426) #19	Abi2 (MGP_PahariEiJ_G0027427) #20	Raph1 (MGP_PahariEiJ_G0027428) #21	Cd28 (MGP_PahariEiJ_G0027429) #22	Ctla4 (MGP_PahariEiJ_G0027430) #23	MGP_PahariEiJ_G0027431 #24	Pard3b (MGP_PahariEiJ_G0027432) #25	Nrp2 (MGP_PahariEiJ_G0027433) #26	Ino80d (MGP_PahariEiJ_G0027434) #27	MGP_PahariEiJ_G0027435 #28	Eef1b2 (MGP_PahariEiJ_G0027436) ##29	Cmklr2 (MGP_PahariEiJ_G0027437) #30	Zdbf2 (MGP_PahariEiJ_G0027438) #31	Adam23 (MGP_PahariEiJ_G0027439) #32	Dytn (MGP_PahariEiJ_G0027440) #34	Mdh1b (MGP_PahariEiJ_G0027441) #35	Fastkd2 (MGP_PahariEiJ_G0027442) #36	MGP_PahariEiJ_G0027443	Klf7 (MGP_PahariEiJ_G0027444)
Rat	MODERN SPECIES	19	Fzd7 (ENSRNOG00000016119) #8	RGD1562029 (ENSRNOG00000022723) #9	Sumo1 (ENSRNOG00000016133) ##10	Nop58 (ENSRNOG00000016486) #11	Bmpr2 (ENSRNOG00000022196) #13	ENSRNOG00000066953	LOC301444 (ENSRNOG00000019107)	Fam117b (ENSRNOG00000022066) #14	Ica1l (ENSRNOG00000017258) #15	Wdr12 (ENSRNOG00000017340) #16	Carf (ENSRNOG00000017491) #17	Nbeal1 (ENSRNOG00000021525) #18	Cyp20a1 (ENSRNOG00000017631) #19	Abi2 (ENSRNOG00000017707) #20	Raph1 (ENSRNOG00000014722) #21	Cd28 (ENSRNOG00000010283) #22	Ctla4 (ENSRNOG00000054129) #23	Icos (ENSRNOG00000046196) #24	Pard3b (ENSRNOG00000024345) #25	Nrp2 (ENSRNOG00000031232) #26	Rpl37-ps5 (ENSRNOG00000033803)	Ino80d (ENSRNOG00000024272) #27	Ndufs1 (ENSRNOG00000011849) #28	Eef1b2 (ENSRNOG00000024186) ##29	Cmklr2 (ENSRNOG00000045532) #30	Zdbf2 (ENSRNOG00000024114) #31	Adam23 (ENSRNOG00000012424) #32	Fam237a (ENSRNOG00000054699) #33	Dytn (ENSRNOG00000042181) #34	Mdh1b (ENSRNOG00000012891) #35	ENSRNOG00000063009
Upper Galilee mountains blind mole rat	MODERN SPECIES	1322												Nbeal1 (ENSNGAG00000020072) #18	Cyp20a1 (ENSNGAG00000020232) #19	Abi2 (ENSNGAG00000012110) #20	ENSNGAG00000001490 #21	Cd28 (ENSNGAG00000015761) #22	Ctla4 (ENSNGAG00000019017) #23	ENSNGAG00000010975	Icos (ENSNGAG00000015325) #24	Pard3b (ENSNGAG00000019309) #25	Nrp2 (ENSNGAG00000014175) #26	Ino80d (ENSNGAG00000007370) #27	Ndufs1 (ENSNGAG00000016531) #28	Eef1b2 (ENSNGAG00000020801) ##29	Cmklr2 (ENSNGAG00000014936) #30	Zdbf2 (ENSNGAG00000010826) #31	Adam23 (ENSNGAG00000014933) #32	Mdh1b (ENSNGAG00000000139) #35	Fastkd2 (ENSNGAG00000001279) #36	Klf7 (ENSNGAG00000016561)	Creb1 (ENSNGAG00000018967)
Lesser Egyptian jerboa	MODERN SPECIES	52	Als2 (ENSJJAG00000017902)	Cdk15 (ENSJJAG00000013533) #7	Fzd7 (ENSJJAG00000011395) #8	Gm973 (ENSJJAG00000024266) #9	ENSJJAG00000022745 ##10	Nop58 (ENSJJAG00000018213) #11	Bmpr2 (ENSJJAG00000015151) #13	Fam117b (ENSJJAG00000019496) #14	Ica1l (ENSJJAG00000022732) #15	ENSJJAG00000000724 #16	Carf (ENSJJAG00000014072) #17	Nbeal1 (ENSJJAG00000023210) #18	Cyp20a1 (ENSJJAG00000007155) #19	Abi2 (ENSJJAG00000006918) #20	ENSJJAG00000023840 #21	Cd28 (ENSJJAG00000001227) #22	Ctla4 (ENSJJAG00000013112) #23	Icos (ENSJJAG00000007794) #24	Pard3b (ENSJJAG00000015271) #25	Nrp2 (ENSJJAG00000016788) #26	Ino80d (ENSJJAG00000018074) #27	Ndufs1 (ENSJJAG00000013916) #28	Eef1b2 (ENSJJAG00000004915) ##29	Adam23 (ENSJJAG00000016078) #32	Dytn (ENSJJAG00000016868) #34	Mdh1b (ENSJJAG00000010713) #35	Fastkd2 (ENSJJAG00000000986) #36	ENSJJAG00000021742 #37	Klf7 (ENSJJAG00000011480)	Creb1 (ENSJJAG00000013846)	ENSJJAG00000023618
Kangaroo rat	MODERN SPECIES	320	Mpp4 (ENSDORG00000001842)	Als2 (ENSDORG00000001846)	Cdk15 (ENSDORG00000015415) #7	Fzd7 (ENSDORG00000014396) #8	ENSDORG00000025164	Bmpr2 (ENSDORG00000009209) #13	ENSDORG00000015288 #14	Ica1l (ENSDORG00000015292) #15	Wdr12 (ENSDORG00000015294) #16	Carf (ENSDORG00000006614) #17	Nbeal1 (ENSDORG00000015714) #18	Cyp20a1 (ENSDORG00000015715) #19	ENSDORG00000028647	Abi2 (ENSDORG00000028252) #20	ENSDORG00000007525 #21	Cd28 (ENSDORG00000013428) #22	Ctla4 (ENSDORG00000008556) #23	Icos (ENSDORG00000010237) #24	ENSDORG00000029364	Pard3b (ENSDORG00000014139) #25	ENSDORG00000029450 #26	Ino80d (ENSDORG00000027999) #27	ENSDORG00000025350 #28	ENSDORG00000023550 #28	Cmklr2 (ENSDORG00000013107) #30	Adam23 (ENSDORG00000015422) #32	Dytn (ENSDORG00000028814) #34	Mdh1b (ENSDORG00000011290) #35	Fastkd2 (ENSDORG00000011295) #36	Klf7 (ENSDORG00000009634)	Creb1 (ENSDORG00000012535)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Hystricomorpha	ANCESTRAL SPECIES	28		ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A.t.a #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000034448	BMPR2 (ENSHGLG00000004325) #13	FAM117B (ENSHGLG00000010337) #14	ENSHGLG00000042809	ENSHGLG00000032915	ICA1L (ENSHGLG00000007772) #15	WDR12 (ENSHGLG00000004891) #16	ENSHGLG00000004722	ENSHGLG00000020889	CARF (ENSHGLG00000007326) #17	ENSHGLG00000037622	NBEAL1 (ENSHGLG00000004471) #18	CYP20A1 (ENSHGLG00000050312) #19	ABI2 (ENSHGLG00000007481) #20	ENSHGLG00000005031 #21	CD28 (ENSHGLG00000037192) #22	CTLA4 (ENSHGLG00000009115) #23	ICOS (ENSHGLG00000008777) #24	ENSHGLG00000043313	ENSHGLG00000016877	ENSHGLG00000048100	PARD3B (ENSHGLG00000004982) #25	NRP2 (ENSHGLG00000010562) #26	ENSHGLG00000049876	INO80D (ENSHGLG00000018537) #27	NDUFS1 (ENSHGLG00000015179) #28	EEF1B2 (ENSHGLG00000015147) ##29	ENSHGLG00000045433	CMKLR2 (ENSHGLG00000046982) #30	ENSHGLG00000044712 #31	ADAM23 (ENSHGLG00000006393) #32
Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00390000017123.b	ENSGT00940000159383	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A.t.a #11	ENSGT00940000156449 #13	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00390000017123.b	ENSGT00940000159383	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A.t.a #11	ENSGT00940000156449 #13	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Long-tailed chinchilla	MODERN SPECIES	164	KIAA2012 (ENSCLAG00000004402) #9	SUMO1 (ENSCLAG00000005196) ##10	NOP58 (ENSCLAG00000003819) #11	BMPR2 (ENSCLAG00000006272) #13	ICA1L (ENSCLAG00000005015) #15	WDR12 (ENSCLAG00000004491) #16	CARF (ENSCLAG00000007915) #17	ENSCLAG00000007700	ENSCLAG00000006700	NBEAL1 (ENSCLAG00000005102) #18	CYP20A1 (ENSCLAG00000004163) #19	ENSCLAG00000006025	ENSCLAG00000004760	ABI2 (ENSCLAG00000004021) #20	ENSCLAG00000003175 #21	CD28 (ENSCLAG00000004670) #22	CTLA4 (ENSCLAG00000004042) #23	ICOS (ENSCLAG00000003964) #24	PARD3B (ENSCLAG00000010240) #25	NRP2 (ENSCLAG00000009120) #26	INO80D (ENSCLAG00000006191) #27	NDUFS1 (ENSCLAG00000009634) #28	EEF1B2 (ENSCLAG00000009181) ##29	CMKLR2 (ENSCLAG00000008973) #30	ENSCLAG00000008490	ATXN3L (ENSCLAG00000005825)	ADAM23 (ENSCLAG00000004674) #32	DYTN (ENSCLAG00000003705) #34	MDH1B (ENSCLAG00000003385) #35	FASTKD2 (ENSCLAG00000007036) #36	KLF7 (ENSCLAG00000006083)
Guinea pig	MODERN SPECIES	13	HOOK3 (ENSCPOG00000000248)	RNF170 (ENSCPOG00000001900)	THAP1 (ENSCPOG00000038299)	CDK15 (ENSCPOG00000003272) #7	FZD7 (ENSCPOG00000003276) #8	SUMO1 (ENSCPOG00000039864) ##10	NOP58 (ENSCPOG00000030510) #11	BMPR2 (ENSCPOG00000009586) #13	ICA1L (ENSCPOG00000009349) #15	WDR12 (ENSCPOG00000008824) #16	CARF (ENSCPOG00000008827) #17	NBEAL1 (ENSCPOG00000008009) #18	CYP20A1 (ENSCPOG00000009758) #19	ABI2 (ENSCPOG00000007562) #20	RAPH1 (ENSCPOG00000020239) #21	CD28 (ENSCPOG00000035938) #22	CTLA4 (ENSCPOG00000019534) #23	ICOS (ENSCPOG00000030931) #24	ENSCPOG00000030358	PARD3B (ENSCPOG00000004380) #25	NRP2 (ENSCPOG00000004390) #26	ENSCPOG00000010964 #27	NDUFS1 (ENSCPOG00000005555) #28	EEF1B2 (ENSCPOG00000014496) ##29	ADAM23 (ENSCPOG00000005871) #32	MDH1B (ENSCPOG00000005608) #35	FASTKD2 (ENSCPOG00000005624) #36	KLF7 (ENSCPOG00000009080)	CREB1 (ENSCPOG00000010778)	METTL21A (ENSCPOG00000034803)	ENSCPOG00000035156
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.g ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Marmotini_b	ANCESTRAL SPECIES	103	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.g ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Arctic ground squirrel	MODERN SPECIES	141												CYP20A1 (ENSUPAG00010007092) #19	ABI2 (ENSUPAG00010007107) #20	RAPH1 (ENSUPAG00010007232) #21	ENSUPAG00010007347	CD28 (ENSUPAG00010007360) #22	CTLA4 (ENSUPAG00010007371) #23	ICOS (ENSUPAG00010007386) #24	PARD3B (ENSUPAG00010007426) #25	NRP2 (ENSUPAG00010007567) #26	INO80D (ENSUPAG00010007624) #27	NDUFS1 (ENSUPAG00010007661) #28	EEF1B2 (ENSUPAG00010007678) ##29	CMKLR2 (ENSUPAG00010007707) #30	ZDBF2 (ENSUPAG00010007725) #31	ADAM23 (ENSUPAG00010007731) #32	FAM237A (ENSUPAG00010007856) #33	DYTN (ENSUPAG00010007862) #34	MDH1B (ENSUPAG00010007886) #35	FASTKD2 (ENSUPAG00010007916) #36	CPO (ENSUPAG00010007941) #37
Squirrel	MODERN SPECIES	231														ABI2 (ENSSTOG00000015888) #20	RAPH1 (ENSSTOG00000028594) #21	CD28 (ENSSTOG00000026213) #22	CTLA4 (ENSSTOG00000020540) #23	ICOS (ENSSTOG00000013542) #24	PARD3B (ENSSTOG00000010207) #25	NRP2 (ENSSTOG00000010229) #26	INO80D (ENSSTOG00000028419) #27	NDUFS1 (ENSSTOG00000010255) #28	EEF1B2 (ENSSTOG00000005437) ##29	CMKLR2 (ENSSTOG00000005452) #30	ZDBF2 (ENSSTOG00000001663) #31	ADAM23 (ENSSTOG00000024094) #32	DYTN (ENSSTOG00000019822) #34	MDH1B (ENSSTOG00000003194) #35	FASTKD2 (ENSSTOG00000022821) #36	CPO (ENSSTOG00000013351) #37	KLF7 (ENSSTOG00000011069)
Alpin marmot	MODERN SPECIES	8	SUMO1 (ENSMMMG00000012871) ##10	NOP58 (ENSMMMG00000012922) #11	ENSMMMG00000012982	ENSMMMG00000012991	BMPR2 (ENSMMMG00000012999) #13	ENSMMMG00000013017	ENSMMMG00000013051 #14	ENSMMMG00000013060 #14	ICA1L (ENSMMMG00000013064) #15	WDR12 (ENSMMMG00000013110) #16	CARF (ENSMMMG00000013161) #17	NBEAL1 (ENSMMMG00000013229) #18	CYP20A1 (ENSMMMG00000013312) #19	ABI2 (ENSMMMG00000013329) #20	ENSMMMG00000013568 #21	CD28 (ENSMMMG00000013599) #22	CTLA4 (ENSMMMG00000013609) #23	ICOS (ENSMMMG00000013624) #24	PARD3B (ENSMMMG00000013680) #25	ENSMMMG00000013911	NRP2 (ENSMMMG00000013924) #26	INO80D (ENSMMMG00000014555) #27	NDUFS1 (ENSMMMG00000014566) #28	ENSMMMG00000014596 ##29	CMKLR2 (ENSMMMG00000014632) #30	ZDBF2 (ENSMMMG00000014650) #31	ADAM23 (ENSMMMG00000014678) #32	FAM237A (ENSMMMG00000014819) #33	DYTN (ENSMMMG00000014828) #34	ENSMMMG00000014844	MDH1B (ENSMMMG00000014852) #35
Eurasian red squirrel	MODERN SPECIES	12	CDK15 (ENSSVLG00005006442) #7	FZD7 (ENSSVLG00005006721) #8	KIAA2012 (ENSSVLG00005000255) #9	ENSSVLG00005000315 ##10	ENSSVLG00005000362 #11	BMPR2 (ENSSVLG00005000484) #13	ENSSVLG00005000534 #14	ENSSVLG00005000554	ENSSVLG00005000579 #15	WDR12 (ENSSVLG00005000598) #16	ENSSVLG00005000686 #17	ENSSVLG00005000784	NBEAL1 (ENSSVLG00005000853) #18	CYP20A1 (ENSSVLG00005000970) #19	ABI2 (ENSSVLG00005001071) #20	CD28 (ENSSVLG00005001473) #22	CTLA4 (ENSSVLG00005001529) #23	ICOS (ENSSVLG00005001570) #24	PARD3B (ENSSVLG00005001789) #25	NRP2 (ENSSVLG00005002141) #26	INO80D (ENSSVLG00005002283) #27	ENSSVLG00005002396 #28	ENSSVLG00005002606 ##29	CMKLR2 (ENSSVLG00005002631) #30	ENSSVLG00005002653 #31	ADAM23 (ENSSVLG00005002721) #32	FAM237A (ENSSVLG00005002854) #33	DYTN (ENSSVLG00005002873) #34	MDH1B (ENSSVLG00005002924) #35	FASTKD2 (ENSSVLG00005002985) #36	CPO (ENSSVLG00005003015) #37
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Suina	ANCESTRAL SPECIES	3	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Pig	MODERN SPECIES	6	CDK15 (ENSSSCG00000022296) #7	FZD7 (ENSSSCG00000016111) #8	KIAA2012 (ENSSSCG00000016110) #9	SUMO1 (ENSSSCG00000035842) ##10	NOP58 (ENSSSCG00000022225) #11	BMPR2 (ENSSSCG00000016113) #13	FAM117B (ENSSSCG00000016114) #14	ENSSSCG00000043400	ICA1L (ENSSSCG00000016115) #15	WDR12 (ENSSSCG00000016116) #16	CARF (ENSSSCG00000016117) #17	NBEAL1 (ENSSSCG00000016118) #18	CYP20A1 (ENSSSCG00000055761) #19	ABI2 (ENSSSCG00000034630) #20	ENSSSCG00000016119 #21	CD28 (ENSSSCG00000028561) #22	CTLA4 (ENSSSCG00000016122) #23	ICOS (ENSSSCG00000025042) #24	PARD3B (ENSSSCG00000016123) #25	ENSSSCG00000055400	NRP2 (ENSSSCG00000026383) #26	INO80D (ENSSSCG00000016125) #27	NDUFS1 (ENSSSCG00000016127) #28	EEF1B2 (ENSSSCG00000016128) ##29	CMKLR2 (ENSSSCG00000016129) #30	ZDBF2 (ENSSSCG00000016130) #31	ADAM23 (ENSSSCG00000016131) #32	FAM237A (ENSSSCG00000036691) #33	DYTN (ENSSSCG00000035158) #34	MDH1B (ENSSSCG00000016133) #35	FASTKD2 (ENSSSCG00000016134) #36
Chacoan peccary	MODERN SPECIES	91	ALS2 (ENSCWAG00000016152)	CDK15 (ENSCWAG00000016217) #7	FZD7 (ENSCWAG00000016583) #8	KIAA2012 (ENSCWAG00000016603) #9	SUMO1 (ENSCWAG00000016775) ##10	NOP58 (ENSCWAG00000016884) #11	BMPR2 (ENSCWAG00000016944) #13	FAM117B (ENSCWAG00000017046) #14	ICA1L (ENSCWAG00000017108) #15	WDR12 (ENSCWAG00000017209) #16	CARF (ENSCWAG00000017264) #17	NBEAL1 (ENSCWAG00000017563) #18	CYP20A1 (ENSCWAG00000017608) #19	ABI2 (ENSCWAG00000017671) #20	RAPH1 (ENSCWAG00000018090) #21	CD28 (ENSCWAG00000020352) #22	CTLA4 (ENSCWAG00000020380) #23	ICOS (ENSCWAG00000020408) #24	PARD3B (ENSCWAG00000020460) #25	NRP2 (ENSCWAG00000020581) #26	INO80D (ENSCWAG00000020612) #27	ENSCWAG00000020619	NDUFS1 (ENSCWAG00000020647) #28	EEF1B2 (ENSCWAG00000020782) ##29	CMKLR2 (ENSCWAG00000020796) #30	ENSCWAG00000020804 #31	ENSCWAG00000020821
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Camelidae	ANCESTRAL SPECIES	58	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Arabian camel	MODERN SPECIES	31	CDK15 (ENSCDRG00005019534) #7	FZD7 (ENSCDRG00005019516) #8	KIAA2012 (ENSCDRG00005019503) #9	SUMO1 (ENSCDRG00005019446) ##10	NOP58 (ENSCDRG00005019373) #11	ENSCDRG00005019360	BMPR2 (ENSCDRG00005019320) #13	ENSCDRG00005019289 #14	ENSCDRG00005019283 #14	ICA1L (ENSCDRG00005019255) #15	WDR12 (ENSCDRG00005019221) #16	CARF (ENSCDRG00005019098) #17	NBEAL1 (ENSCDRG00005019031) #18	ABI2 (ENSCDRG00005018744) #20	ENSCDRG00005018577 #21	CD28 (ENSCDRG00005018484) #22	CTLA4 (ENSCDRG00005018448) #23	ICOS (ENSCDRG00005018420) #24	PARD3B (ENSCDRG00005018074) #25	NRP2 (ENSCDRG00005017938) #26	INO80D (ENSCDRG00005017847) #27	NDUFS1 (ENSCDRG00005017509) #28	EEF1B2 (ENSCDRG00005017418) ##29	CMKLR2 (ENSCDRG00005017405) #30	ZDBF2 (ENSCDRG00005017378) #31	ADAM23 (ENSCDRG00005016801) #32	FAM237A (ENSCDRG00005016730) #33	DYTN (ENSCDRG00005016665) #34	MDH1B (ENSCDRG00005016545) #35	FASTKD2 (ENSCDRG00005016506) #36	CPO (ENSCDRG00005016423) #37
Alpaca	MODERN SPECIES	2771						BMPR2 (ENSVPAG00000009496) #13	ENSVPAG00000009497 #14	ICA1L (ENSVPAG00000009498) #15	WDR12 (ENSVPAG00000009500) #16	CARF (ENSVPAG00000009501) #17	ENSVPAG00000009502 #18	ENSVPAG00000009503 #18	CYP20A1 (ENSVPAG00000009505) #19	ABI2 (ENSVPAG00000009506) #20	RAPH1 (ENSVPAG00000009507) #21	CD28 (ENSVPAG00000009510) #22	ICOS (ENSVPAG00000009512) #24	PARD3B (ENSVPAG00000009514) #25	ENSVPAG00000009518 #26
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Pecora	ANCESTRAL SPECIES	16	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.a ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Yarkand deer	MODERN SPECIES	31	KIAA2012 (ENSCHYG00000003689) #9	ENSCHYG00000003665	ENSCHYG00000003640 ##10	NOP58 (ENSCHYG00000003579) #11	BMPR2 (ENSCHYG00000003535) #13	FAM117B (ENSCHYG00000003510) #14	ICA1L (ENSCHYG00000003466) #15	WDR12 (ENSCHYG00000003428) #16	ENSCHYG00000003419	CARF (ENSCHYG00000003336) #17	NBEAL1 (ENSCHYG00000003290) #18	CYP20A1 (ENSCHYG00000003265) #19	ENSCHYG00000003256	ABI2 (ENSCHYG00000003231) #20	RAPH1 (ENSCHYG00000002595) #21	CD28 (ENSCHYG00000002432) #22	CTLA4 (ENSCHYG00000002394) #23	ICOS (ENSCHYG00000002371) #24	ENSCHYG00000002349	ENSCHYG00000002345	PARD3B (ENSCHYG00000002220) #25	NRP2 (ENSCHYG00000002124) #26	ENSCHYG00000002093	INO80D (ENSCHYG00000002072) #27	NDUFS1 (ENSCHYG00000001983) #28	ENSCHYG00000001947 ##29	ENSCHYG00000001938	CMKLR2 (ENSCHYG00000001927) #30	ZDBF2 (ENSCHYG00000001897) #31	ADAM23 (ENSCHYG00000001792) #32	FAM237A (ENSCHYG00000001756) #33
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.a ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v.cb ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.a ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v.cb ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.a ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Bos	ANCESTRAL SPECIES	6	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v.cb ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.a ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v.cb ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT01100000263480.a.a.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.a ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00510000047245.w.a.a.b	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35
Cow	MODERN SPECIES	11	FZD7 (ENSBTAG00000002283) #8	KIAA2012 (ENSBTAG00000034192) #9	SUMO1 (ENSBTAG00000049402) ##10	NOP58 (ENSBTAG00000005517) #11	BMPR2 (ENSBTAG00000006420) #13	FAM117B (ENSBTAG00000048876) #14	ICA1L (ENSBTAG00000008673) #15	WDR12 (ENSBTAG00000015424) #16	ENSBTAG00000053168	CARF (ENSBTAG00000016000) #17	ENSBTAG00000019994	NBEAL1 (ENSBTAG00000014469) #18	CYP20A1 (ENSBTAG00000000851) #19	ABI2 (ENSBTAG00000011017) #20	RAPH1 (ENSBTAG00000027201) #21	CD28 (ENSBTAG00000007445) #22	ENSBTAG00000051061	CTLA4 (ENSBTAG00000013170) #23	ICOS (ENSBTAG00000021596) #24	ENSBTAG00000040367	ENSBTAG00000051630	ENSBTAG00000049320	PARD3B (ENSBTAG00000010293) #25	ENSBTAG00000053833 #25	NRP2 (ENSBTAG00000011971) #26	INO80D (ENSBTAG00000014407) #27	ENSBTAG00000055132	NDUFS1 (ENSBTAG00000021976) #28	EEF1B2 (ENSBTAG00000021979) ##29	CMKLR2 (ENSBTAG00000017043) #30	ZDBF2 (ENSBTAG00000031166) #31
Hybrid Bos Indicus	MODERN SPECIES	11	CDK15 (ENSBIXG00005031571) #7	FZD7 (ENSBIXG00005031573) #8	KIAA2012 (ENSBIXG00005031574) #9	ENSBIXG00005031575 ##10	NOP58 (ENSBIXG00005031577) #11	BMPR2 (ENSBIXG00005031582) #13	FAM117B (ENSBIXG00005031583) #14	ICA1L (ENSBIXG00005031584) #15	WDR12 (ENSBIXG00005031585) #16	CARF (ENSBIXG00005031586) #17	ENSBIXG00005031587	NBEAL1 (ENSBIXG00005031588) #18	CYP20A1 (ENSBIXG00005031589) #19	ABI2 (ENSBIXG00005031590) #20	RAPH1 (ENSBIXG00005031591) #21	CD28 (ENSBIXG00005031593) #22	CTLA4 (ENSBIXG00005031594) #23	ICOS (ENSBIXG00005031595) #24	PARD3B (ENSBIXG00005031598) #25	ENSBIXG00005031599	NRP2 (ENSBIXG00005031600) #26	INO80D (ENSBIXG00005031603) #27	ENSBIXG00005031604	NDUFS1 (ENSBIXG00005031605) #28	ENSBIXG00005031606 ##29	CMKLR2 (ENSBIXG00005031611) #30	ZDBF2 (ENSBIXG00005031612) #31	ADAM23 (ENSBIXG00005031613) #32	ENSBIXG00005031614	DYTN (ENSBIXG00005031615) #34	MDH1B (ENSBIXG00005031616) #35
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v.cb ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.a ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00510000047245.w.a.a.b	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Wild yak	MODERN SPECIES	1623	CDK15 (ENSBMUG00000017707) #7	FZD7 (ENSBMUG00000017750) #8	KIAA2012 (ENSBMUG00000017856) #9	ENSBMUG00000017957	NOP58 (ENSBMUG00000017992) #11	BMPR2 (ENSBMUG00000018053) #13	ENSBMUG00000018077 #14	ENSBMUG00000018084 #14	ICA1L (ENSBMUG00000018119) #15	WDR12 (ENSBMUG00000018135) #16	CARF (ENSBMUG00000018245) #17	NBEAL1 (ENSBMUG00000018435) #18	CYP20A1 (ENSBMUG00000018465) #19	ABI2 (ENSBMUG00000018557) #20	ENSBMUG00000018823 #21	CD28 (ENSBMUG00000018899) #22	CTLA4 (ENSBMUG00000018913) #23	ICOS (ENSBMUG00000018950) #24	PARD3B (ENSBMUG00000018984) #25
Domestic yak	MODERN SPECIES	11	KIAA2012 (ENSBGRG00000018013) #9	ENSBGRG00000017875 ##10	NOP58 (ENSBGRG00000017588) #11	BMPR2 (ENSBGRG00000017354) #13	ENSBGRG00000017311	FAM117B (ENSBGRG00000017110) #14	ICA1L (ENSBGRG00000016892) #15	WDR12 (ENSBGRG00000016744) #16	ENSBGRG00000016729	CARF (ENSBGRG00000016286) #17	ENSBGRG00000016261	NBEAL1 (ENSBGRG00000016043) #18	CYP20A1 (ENSBGRG00000015562) #19	ABI2 (ENSBGRG00000014834) #20	ENSBGRG00000012733 #21	CD28 (ENSBGRG00000012545) #22	CTLA4 (ENSBGRG00000012384) #23	ENSBGRG00000012357	ICOS (ENSBGRG00000012246) #24	ENSBGRG00000012209	PARD3B (ENSBGRG00000011721) #25	NRP2 (ENSBGRG00000010098) #26	ENSBGRG00000010010	INO80D (ENSBGRG00000009960) #27	NDUFS1 (ENSBGRG00000009516) #28	ENSBGRG00000009445 ##29	CMKLR2 (ENSBGRG00000009401) #30	ZDBF2 (ENSBGRG00000009322) #31	ENSBGRG00000009270	ADAM23 (ENSBGRG00000008490) #32	FAM237A (ENSBGRG00000008425) #33
American bison	MODERN SPECIES	3330	ALS2 (ENSBBBG00000012289)	CDK15 (ENSBBBG00000012266) #7	KIAA2012 (ENSBBBG00000002300) #9	ENSBBBG00000012202 ##10	NOP58 (ENSBBBG00000012170) #11	BMPR2 (ENSBBBG00000012144) #13	ENSBBBG00000002273 #14	ENSBBBG00000012094 #14	ICA1L (ENSBBBG00000012090) #15	WDR12 (ENSBBBG00000012064) #16	CARF (ENSBBBG00000012044) #17	NBEAL1 (ENSBBBG00000011985) #18	CYP20A1 (ENSBBBG00000002236) #19	ABI2 (ENSBBBG00000011940) #20	ENSBBBG00000011830 #21	CD28 (ENSBBBG00000002157) #22	CTLA4 (ENSBBBG00000002155) #23	ICOS (ENSBBBG00000011656) #24	PARD3B (ENSBBBG00000011555) #25	NRP2 (ENSBBBG00000011269) #26	INO80D (ENSBBBG00000011164) #27	NDUFS1 (ENSBBBG00000011148) #28	ENSBBBG00000011052 ##29	CMKLR2 (ENSBBBG00000011031) #30	ZDBF2 (ENSBBBG00000011029) #31	ADAM23 (ENSBBBG00000011005) #32	FAM237A (ENSBBBG00000010954) #33	DYTN (ENSBBBG00000010949) #34	MDH1B (ENSBBBG00000010925) #35	FASTKD2 (ENSBBBG00000010905) #36	CPO (ENSBBBG00000010898) #37
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v.cb ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.u.a.a.b.b ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Rambouillet Sheep	MODERN SPECIES	11	CDK15 (ENSOARG00020022852) #7	FZD7 (ENSOARG00020023182) #8	KIAA2012 (ENSOARG00020023194) #9	SUMO1 (ENSOARG00020023283) ##10	NOP58 (ENSOARG00020023408) #11	BMPR2 (ENSOARG00020006563) #13	FAM117B (ENSOARG00020006688) #14	ICA1L (ENSOARG00020006778) #15	WDR12 (ENSOARG00020006896) #16	CARF (ENSOARG00020006968) #17	NBEAL1 (ENSOARG00020007440) #18	CYP20A1 (ENSOARG00020007538) #19	ABI2 (ENSOARG00020007596) #20	RAPH1 (ENSOARG00020007863) #21	ENSOARG00020008167	CD28 (ENSOARG00020008197) #22	CTLA4 (ENSOARG00020008302) #23	ICOS (ENSOARG00020008420) #24	PARD3B (ENSOARG00020008587) #25	NRP2 (ENSOARG00020013172) #26	ENSOARG00020013371	INO80D (ENSOARG00020013391) #27	NDUFS1 (ENSOARG00020013502) #28	ENSOARG00020014163 ##29	GPR1 (ENSOARG00020014248) #30	ZDBF2 (ENSOARG00020014286) #31	ADAM23 (ENSOARG00020014405) #32	FAM237A (ENSOARG00020014982) #33	DYTN (ENSOARG00020015031) #34	MDH1B (ENSOARG00020015160) #35	FASTKD2 (ENSOARG00020015403) #36
Goat	MODERN SPECIES	11	CDK15 (ENSCHIG00000009588) #7	FZD7 (ENSCHIG00000026310) #8	KIAA2012 (ENSCHIG00000014714) #9	ENSCHIG00000008668 ##10	NOP58 (ENSCHIG00000025013) #11	BMPR2 (ENSCHIG00000020243) #13	FAM117B (ENSCHIG00000014630) #14	ICA1L (ENSCHIG00000013077) #15	WDR12 (ENSCHIG00000009469) #16	CARF (ENSCHIG00000023655) #17	ENSCHIG00000016764	NBEAL1 (ENSCHIG00000000921) #18	CYP20A1 (ENSCHIG00000022946) #19	ABI2 (ENSCHIG00000002652) #20	RAPH1 (ENSCHIG00000025930) #21	CD28 (ENSCHIG00000024564) #22	CTLA4 (ENSCHIG00000008042) #23	ICOS (ENSCHIG00000024943) #24	PARD3B (ENSCHIG00000007723) #25	NRP2 (ENSCHIG00000016092) #26	INO80D (ENSCHIG00000010718) #27	NDUFS1 (ENSCHIG00000014971) #28	EEF1B2 (ENSCHIG00000026794) ##29	CMKLR2 (ENSCHIG00000007661) #30	ZDBF2 (ENSCHIG00000022575) #31	ADAM23 (ENSCHIG00000011689) #32	FAM237A (ENSCHIG00000010865) #33	DYTN (ENSCHIG00000016602) #34	MDH1B (ENSCHIG00000022560) #35	FASTKD2 (ENSCHIG00000015121) #36	ENSCHIG00000003872
Siberian musk deer	MODERN SPECIES	352																CD28 (ENSMMSG00000016228) #22	CTLA4 (ENSMMSG00000016291) #23	ICOS (ENSMMSG00000016369) #24	ENSMMSG00000016441	PARD3B (ENSMMSG00000016488) #25	NRP2 (ENSMMSG00000016704) #26	INO80D (ENSMMSG00000016888) #27	NDUFS1 (ENSMMSG00000016943) #28	ENSMMSG00000017130 ##29	ZDBF2 (ENSMMSG00000017183) #31	ADAM23 (ENSMMSG00000017291) #32	FAM237A (ENSMMSG00000017572) #33	DYTN (ENSMMSG00000017587) #34	MDH1B (ENSMMSG00000017649) #35	FASTKD2 (ENSMMSG00000017717) #36	CPO (ENSMMSG00000017798) #37
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	18	ALS2 (ENSBMSG00010005735)	CDK15 (ENSBMSG00010005855) #7	FZD7 (ENSBMSG00010005931) #8	KIAA2012 (ENSBMSG00010005958) #9	SUMO1 (ENSBMSG00010006010) ##10	NOP58 (ENSBMSG00010006045) #11	BMPR2 (ENSBMSG00010006114) #13	FAM117B (ENSBMSG00010006217) #14	ICA1L (ENSBMSG00010006262) #15	WDR12 (ENSBMSG00010006329) #16	CARF (ENSBMSG00010006417) #17	ENSBMSG00010006579 #18	ENSBMSG00010006612 #18	CYP20A1 (ENSBMSG00010006657) #19	ABI2 (ENSBMSG00010006723) #20	ENSBMSG00010000193 #22	ENSBMSG00010000215 #22	ENSBMSG00010000230	ENSBMSG00010000252	ICOS (ENSBMSG00010000278) #24	ENSBMSG00010000353	PARD3B (ENSBMSG00010000409) #25	NRP2 (ENSBMSG00010000535) #26	ENSBMSG00010001002	INO80D (ENSBMSG00010001021) #27	ENSBMSG00010001036	NDUFS1 (ENSBMSG00010001085) #28	EEF1B2 (ENSBMSG00010001199) ##29	CMKLR2 (ENSBMSG00010001229) #30	ZDBF2 (ENSBMSG00010001246) #31	ADAM23 (ENSBMSG00010001305) #32
Blue whale	MODERN SPECIES	18	CDK15 (ENSBMSG00010005855) #7	FZD7 (ENSBMSG00010005931) #8	KIAA2012 (ENSBMSG00010005958) #9	SUMO1 (ENSBMSG00010006010) ##10	NOP58 (ENSBMSG00010006045) #11	BMPR2 (ENSBMSG00010006114) #13	FAM117B (ENSBMSG00010006217) #14	ICA1L (ENSBMSG00010006262) #15	WDR12 (ENSBMSG00010006329) #16	CARF (ENSBMSG00010006417) #17	ENSBMSG00010006579 #18	ENSBMSG00010006612 #18	CYP20A1 (ENSBMSG00010006657) #19	ABI2 (ENSBMSG00010006723) #20	ENSBMSG00010000193 #22	ENSBMSG00010000215 #22	ENSBMSG00010000230	ENSBMSG00010000252	ICOS (ENSBMSG00010000278) #24	ENSBMSG00010000353	PARD3B (ENSBMSG00010000409) #25	NRP2 (ENSBMSG00010000535) #26	ENSBMSG00010001002	INO80D (ENSBMSG00010001021) #27	ENSBMSG00010001036	NDUFS1 (ENSBMSG00010001085) #28	EEF1B2 (ENSBMSG00010001199) ##29	CMKLR2 (ENSBMSG00010001229) #30	ZDBF2 (ENSBMSG00010001246) #31	ADAM23 (ENSBMSG00010001305) #32	FAM237A (ENSBMSG00010001408) #33
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Sperm whale	MODERN SPECIES	11	ALS2 (ENSPCTG00005003300)	CDK15 (ENSPCTG00005003352) #7	FZD7 (ENSPCTG00005003371) #8	KIAA2012 (ENSPCTG00005003389) #9	ENSPCTG00005003434 ##10	NOP58 (ENSPCTG00005003474) #11	BMPR2 (ENSPCTG00005003518) #13	FAM117B (ENSPCTG00005003547) #14	ICA1L (ENSPCTG00005003564) #15	WDR12 (ENSPCTG00005003584) #16	CARF (ENSPCTG00005003645) #17	NBEAL1 (ENSPCTG00005003780) #18	CYP20A1 (ENSPCTG00005003802) #19	ABI2 (ENSPCTG00005003833) #20	RAPH1 (ENSPCTG00005003938) #21	ENSPCTG00005005119 #22	CTLA4 (ENSPCTG00005005168) #23	ICOS (ENSPCTG00005005246) #24	ENSPCTG00005005318	ENSPCTG00005005328	PARD3B (ENSPCTG00005005375) #25	NRP2 (ENSPCTG00005005530) #26	ENSPCTG00005006370	INO80D (ENSPCTG00005006389) #27	ENSPCTG00005006412	NDUFS1 (ENSPCTG00005006448) #28	EEF1B2 (ENSPCTG00005006746) ##29	GPR1 (ENSPCTG00005006803) #30	ZDBF2 (ENSPCTG00005006840) #31	ADAM23 (ENSPCTG00005007031) #32	FAM237A (ENSPCTG00005007294) #33
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Dolphin	MODERN SPECIES	809												ENSTTRG00000005099 #18	CYP20A1 (ENSTTRG00000005145) #19	ABI2 (ENSTTRG00000005173) #20	RAPH1 (ENSTTRG00000005206) #21	CD28 (ENSTTRG00000005223) #22	CTLA4 (ENSTTRG00000005237) #23	ICOS (ENSTTRG00000005247) #24
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00960000190610	ENSGT00440000037606.b #31	ENSGT00910000144184.r.a.a.a.a	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35
Vaquita	MODERN SPECIES	18	ALS2 (ENSPSNG00000014137)	CDK15 (ENSPSNG00000013400) #7	FZD7 (ENSPSNG00000013312) #8	KIAA2012 (ENSPSNG00000013027) #9	SUMO1 (ENSPSNG00000012848) ##10	NOP58 (ENSPSNG00000012735) #11	BMPR2 (ENSPSNG00000012669) #13	FAM117B (ENSPSNG00000012551) #14	ICA1L (ENSPSNG00000012492) #15	WDR12 (ENSPSNG00000012441) #16	CARF (ENSPSNG00000011886) #17	NBEAL1 (ENSPSNG00000011649) #18	CYP20A1 (ENSPSNG00000011532) #19	ABI2 (ENSPSNG00000011330) #20	RAPH1 (ENSPSNG00000009801) #21	ENSPSNG00000009309 #22	CTLA4 (ENSPSNG00000009249) #23	ICOS (ENSPSNG00000009099) #24	PARD3B (ENSPSNG00000008898) #25	NRP2 (ENSPSNG00000008707) #26	ENSPSNG00000008614	INO80D (ENSPSNG00000008590) #27	NDUFS1 (ENSPSNG00000008252) #28	EEF1B2 (ENSPSNG00000008153) ##29	CMKLR2 (ENSPSNG00000008130) #30	ENSPSNG00000008115	ZDBF2 (ENSPSNG00000008096) #31	ENSPSNG00000008082	ADAM23 (ENSPSNG00000007702) #32	FAM237A (ENSPSNG00000022142) #33	DYTN (ENSPSNG00000022128) #34
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00950000183010.a.b.a.a.b	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00960000190610	ENSGT00440000037606.b #31	ENSGT00910000144184.r.a.a.a.a	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Beluga whale	MODERN SPECIES	84	CDK15 (ENSDLEG00000018138) #7	FZD7 (ENSDLEG00000018188) #8	KIAA2012 (ENSDLEG00000018200) #9	ENSDLEG00000018236	ENSDLEG00000018249 #11	BMPR2 (ENSDLEG00000018287) #13	FAM117B (ENSDLEG00000018310) #14	ICA1L (ENSDLEG00000018321) #15	WDR12 (ENSDLEG00000018347) #16	CARF (ENSDLEG00000018361) #17	NBEAL1 (ENSDLEG00000018755) #18	ENSDLEG00000020428 #20	ENSDLEG00000008100 #20	RAPH1 (ENSDLEG00000008223) #21	ENSDLEG00000008980	ENSDLEG00000009004 #22	CTLA4 (ENSDLEG00000009020) #23	ICOS (ENSDLEG00000009050) #24	ENSDLEG00000009073	ENSDLEG00000009090	ENSDLEG00000009108	PARD3B (ENSDLEG00000009127) #25	NRP2 (ENSDLEG00000009192) #26	INO80D (ENSDLEG00000009298) #27	NDUFS1 (ENSDLEG00000009340) #28	EEF1B2 (ENSDLEG00000009390) ##29	GPR1 (ENSDLEG00000009434) #30	ENSDLEG00000009440	ZDBF2 (ENSDLEG00000009453) #31	ADAM23 (ENSDLEG00000009497) #32	FAM237A (ENSDLEG00000009620) #33
Narwhal	MODERN SPECIES	302	CDK15 (ENSMMNG00015007704) #7	FZD7 (ENSMMNG00015007670) #8	KIAA2012 (ENSMMNG00015007625) #9	SUMO1 (ENSMMNG00015007566) ##10	NOP58 (ENSMMNG00015007487) #11	BMPR2 (ENSMMNG00015007390) #13	FAM117B (ENSMMNG00015007345) #14	ICA1L (ENSMMNG00015007312) #15	WDR12 (ENSMMNG00015007273) #16	CARF (ENSMMNG00015007132) #17	NBEAL1 (ENSMMNG00015007045) #18	CYP20A1 (ENSMMNG00015007001) #19	ABI2 (ENSMMNG00015006963) #20	RAPH1 (ENSMMNG00015006494) #21	ENSMMNG00015006290	CD28 (ENSMMNG00015006278) #22	CTLA4 (ENSMMNG00015006260) #23	ICOS (ENSMMNG00015006232) #24	ENSMMNG00015006206	ENSMMNG00015006192	PARD3B (ENSMMNG00015005987) #25	NRP2 (ENSMMNG00015005855) #26	INO80D (ENSMMNG00015005802) #27	NDUFS1 (ENSMMNG00015005695) #28	EEF1B2 (ENSMMNG00015005617) ##29	CMKLR2 (ENSMMNG00015005602) #30	ENSMMNG00015005593	ZDBF2 (ENSMMNG00015005582) #31	ENSMMNG00015005570	ADAM23 (ENSMMNG00015005478) #32	FAM237A (ENSMMNG00015005439) #33
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00940000153064.b.d	ENSGT01050000244818.s.a	ENSGT01090000260046	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00940000157820.a.a	ENSGT00530000063873.A #22	ENSGT01090000260046	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00940000157820.a.a	ENSGT00530000063873.A #22	ENSGT01090000260046	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00940000157820.a.a	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000183314.b	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00940000157820.a.a.k	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Ursus	ANCESTRAL SPECIES	4	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000183314.b	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00940000157820.a.a.k	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00910000148124	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Polar bear	MODERN SPECIES	142	KIAA2012 (ENSUMAG00000021861) #9	ENSUMAG00000021873	NOP58 (ENSUMAG00000021875) #11	BMPR2 (ENSUMAG00000021888) #13	ENSUMAG00000021893 #14	ENSUMAG00000021898 #14	ICA1L (ENSUMAG00000021899) #15	WDR12 (ENSUMAG00000021904) #16	CARF (ENSUMAG00000021907) #17	ENSUMAG00000021909 #18	NBEAL1 (ENSUMAG00000021925) #18	CYP20A1 (ENSUMAG00000022062) #19	ABI2 (ENSUMAG00000022146) #20	RAPH1 (ENSUMAG00000022157) #21	ENSUMAG00000022213	CD28 (ENSUMAG00000022222) #22	CTLA4 (ENSUMAG00000022223) #23	ICOS (ENSUMAG00000022228) #24	PARD3B (ENSUMAG00000022273) #25	NRP2 (ENSUMAG00000022446) #26	ENSUMAG00000022452	INO80D (ENSUMAG00000022462) #27	NDUFS1 (ENSUMAG00000022473) #28	EEF1B2 (ENSUMAG00000022481) ##29	ZDBF2 (ENSUMAG00000022505) #31	ADAM23 (ENSUMAG00000022533) #32	FAM237A (ENSUMAG00000022571) #33	DYTN (ENSUMAG00000022576) #34	MDH1B (ENSUMAG00000022585) #35	FASTKD2 (ENSUMAG00000022590) #36	CPO (ENSUMAG00000022606) #37
American black bear	MODERN SPECIES	1826																CD28 (ENSUAMG00000021439) #22	CTLA4 (ENSUAMG00000021462) #23	ICOS (ENSUAMG00000021465) #24
Giant Panda	MODERN SPECIES	11	KIAA2012 (ENSAMEG00000013230) #9	ENSAMEG00000013225 ##10	NOP58 (ENSAMEG00000013168) #11	ENSAMEG00000030387	BMPR2 (ENSAMEG00000013148) #13	ENSAMEG00000013132 #14	ENSAMEG00000026389 #14	ICA1L (ENSAMEG00000013120) #15	WDR12 (ENSAMEG00000013091) #16	CARF (ENSAMEG00000013068) #17	NBEAL1 (ENSAMEG00000013020) #18	ABI2 (ENSAMEG00000012960) #20	ENSAMEG00000002970 #21	ENSAMEG00000030945	ENSAMEG00000028551	CD28 (ENSAMEG00000002955) #22	CTLA4 (ENSAMEG00000002942) #23	ICOS (ENSAMEG00000002936) #24	PARD3B (ENSAMEG00000002930) #25	NRP2 (ENSAMEG00000003086) #26	INO80D (ENSAMEG00000003072) #27	NDUFS1 (ENSAMEG00000003030) #28	ENSAMEG00000003015 ##29	ZDBF2 (ENSAMEG00000029468) #31	CMKLR2 (ENSAMEG00000003011) #30	ADAM23 (ENSAMEG00000002950) #32	FAM237A (ENSAMEG00000029073) #33	DYTN (ENSAMEG00000025472) #34	MDH1B (ENSAMEG00000002932) #35	FASTKD2 (ENSAMEG00000002917) #36	CPO (ENSAMEG00000015096) #37
Mustelinae	ANCESTRAL SPECIES	44	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Ferret	MODERN SPECIES	265	FZD7 (ENSMPUG00000018904) #8	ENSMPUG00000000326 #9	ENSMPUG00000000334	ENSMPUG00000000335 ##10	NOP58 (ENSMPUG00000000351) #11	BMPR2 (ENSMPUG00000000354) #13	FAM117B (ENSMPUG00000000358) #14	ICA1L (ENSMPUG00000000375) #15	WDR12 (ENSMPUG00000000379) #16	CARF (ENSMPUG00000000382) #17	NBEAL1 (ENSMPUG00000000385) #18	ENSMPUG00000000395 #19	ENSMPUG00000000397 #19	ABI2 (ENSMPUG00000000402) #20	RAPH1 (ENSMPUG00000000405) #21	CD28 (ENSMPUG00000000418) #22	CTLA4 (ENSMPUG00000000422) #23	ICOS (ENSMPUG00000000425) #24	ENSMPUG00000000428	ENSMPUG00000000430 ##25	PARD3B (ENSMPUG00000000432) #25	NRP2 (ENSMPUG00000000435) #26	ENSMPUG00000000437	INO80D (ENSMPUG00000000439) #27	NDUFS1 (ENSMPUG00000000442) #28	EEF1B2 (ENSMPUG00000000444) ##29	CMKLR2 (ENSMPUG00000018909) #30	ZDBF2 (ENSMPUG00000000463) #31	ADAM23 (ENSMPUG00000000467) #32	ENSMPUG00000000471	MDH1B (ENSMPUG00000000473) #35
American mink	MODERN SPECIES	40	FZD7 (ENSNVIG00000007800) #8	KIAA2012 (ENSNVIG00000007730) #9	SUMO1 (ENSNVIG00000007649) ##10	NOP58 (ENSNVIG00000007538) #11	BMPR2 (ENSNVIG00000007469) #13	ENSNVIG00000007447 #14	ENSNVIG00000007441 #14	ICA1L (ENSNVIG00000007376) #15	WDR12 (ENSNVIG00000007326) #16	F6SXV3 (ENSNVIG00000007220) #17	NBEAL1 (ENSNVIG00000007140) #18	CYP20A1 (ENSNVIG00000007093) #19	ABI2 (ENSNVIG00000006920) #20	RAPH1 (ENSNVIG00000006475) #21	ENSNVIG00000006462	CD28 (ENSNVIG00000006426) #22	CTLA4 (ENSNVIG00000006392) #23	ICOS (ENSNVIG00000006380) #24	PARD3B (ENSNVIG00000005889) #25	NRP2 (ENSNVIG00000005651) #26	INO80D (ENSNVIG00000005634) #27	NDUFS1 (ENSNVIG00000005404) #28	EEF1B2 (ENSNVIG00000005362) ##29	GPR1 (ENSNVIG00000005355) #30	ZDBF2 (ENSNVIG00000005326) #31	ADAM23 (ENSNVIG00000005209) #32	FAM237A (ENSNVIG00000005198) #33	DYTN (ENSNVIG00000005190) #34	MDH1B (ENSNVIG00000005145) #35	FASTKD2 (ENSNVIG00000005116) #36	CBPO (ENSNVIG00000005106) #37
Canidae	ANCESTRAL SPECIES	20	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.e	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT01090000260046.e.a.a.b	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.q ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00940000158239.b #8	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.e	ENSGT00860000133854 #9	ENSGT00940000154319.v.kb ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000154694.l.b.b.a.a.b	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.q ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Dingo	MODERN SPECIES	398	KIAA2012 (ENSCAFG00020002449) #9	ENSCAFG00020002419 ##10	NOP58 (ENSCAFG00020002394) #11	BMPR2 (ENSCAFG00020002138) #13	FAM117B (ENSCAFG00020002101) #14	ICA1L (ENSCAFG00020002040) #15	WDR12 (ENSCAFG00020001958) #16	CARF (ENSCAFG00020001932) #17	ENSCAFG00020001912	NBEAL1 (ENSCAFG00020001831) #18	CYP20A1 (ENSCAFG00020001812) #19	ENSCAFG00020001801	ENSCAFG00020001784	ABI2 (ENSCAFG00020001752) #20	RAPH1 (ENSCAFG00020001630) #21	CD28 (ENSCAFG00020001531) #22	CTLA4 (ENSCAFG00020001506) #23	ICOS (ENSCAFG00020001489) #24	PARD3B (ENSCAFG00020001089) #25	NRP2 (ENSCAFG00020000746) #26	INO80D (ENSCAFG00020000661) #27	NDUFS1 (ENSCAFG00020000642) #28	EEF1B2 (ENSCAFG00020000617) ##29	CMKLR2 (ENSCAFG00020000614) #30	ZDBF2 (ENSCAFG00020000545) #31	ADAM23 (ENSCAFG00020000240) #32	FAM237A (ENSCAFG00020000156) #33	DYTN (ENSCAFG00020027434) #34	MDH1B (ENSCAFG00020027429) #35	FASTKD2 (ENSCAFG00020027426) #36	CPO (ENSCAFG00020027425) #37
Dog	MODERN SPECIES	30	NOP58 (ENSCAFG00845015320) #11	BMPR2 (ENSCAFG00845015459) #13	FAM117B (ENSCAFG00845015582) #14	ICA1L (ENSCAFG00845015647) #15	WDR12 (ENSCAFG00845015685) #16	CARF (ENSCAFG00845015868) #17	ENSCAFG00845016161	NBEAL1 (ENSCAFG00845016248) #18	CYP20A1 (ENSCAFG00845016438) #19	ENSCAFG00845016541	ABI2 (ENSCAFG00845016661) #20	ENSCAFG00845016782	ENSCAFG00845016818	RAPH1 (ENSCAFG00845017225) #21	ENSCAFG00845017896	CD28 (ENSCAFG00845018097) #22	CTLA4 (ENSCAFG00845018252) #23	ICOS (ENSCAFG00845018403) #24	PARD3B (ENSCAFG00845018916) #25	NRP2 (ENSCAFG00845019968) #26	INO80D (ENSCAFG00845020375) #27	NDUFS1 (ENSCAFG00845020511) #28	EEF1B2 (ENSCAFG00845020822) ##29	GPR1 (ENSCAFG00845020895) #30	ZDBF2 (ENSCAFG00845020911) #31	ADAM23 (ENSCAFG00845021040) #32	FAM237A (ENSCAFG00845021430) #33	DYTN (ENSCAFG00845021457) #34	MDH1B (ENSCAFG00845021551) #35	FASTKD2 (ENSCAFG00845021685) #36	CPO (ENSCAFG00845021788) #37
Red fox	MODERN SPECIES	41	ENSVVUG00000018290	NOP58 (ENSVVUG00000018258) #11	BMPR2 (ENSVVUG00000018236) #13	ENSVVUG00000018233 #14	ENSVVUG00000018231 #14	ICA1L (ENSVVUG00000018171) #15	WDR12 (ENSVVUG00000018074) #16	CARF (ENSVVUG00000017926) #17	ENSVVUG00000017885 #18	NBEAL1 (ENSVVUG00000017646) #18	CYP20A1 (ENSVVUG00000017336) #19	ENSVVUG00000017318	ENSVVUG00000017315	ABI2 (ENSVVUG00000017312) #20	RAPH1 (ENSVVUG00000017063) #21	CD28 (ENSVVUG00000017013) #22	ENSVVUG00000017012	CTLA4 (ENSVVUG00000017009) #23	ICOS (ENSVVUG00000017004) #24	PARD3B (ENSVVUG00000016975) #25	NRP2 (ENSVVUG00000016946) #26	INO80D (ENSVVUG00000016931) #27	NDUFS1 (ENSVVUG00000016918) #28	EEF1B2 (ENSVVUG00000016896) ##29	GPR1 (ENSVVUG00000016890) #30	ZDBF2 (ENSVVUG00000016880) #31
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00940000157820.a.a	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.o ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.c.b	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00520000059926.a.b	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.o ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.c.b	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00520000059926.a.b	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h.o ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
lion	MODERN SPECIES	8	CDK15 (ENSPLOG00000012480) #7	FZD7 (ENSPLOG00000012419) #8	KIAA2012 (ENSPLOG00000012218) #9	ENSPLOG00000012180	ENSPLOG00000012052 ##10	NOP58 (ENSPLOG00000011950) #11	BMPR2 (ENSPLOG00000011747) #13	FAM117B (ENSPLOG00000011690) #14	ICA1L (ENSPLOG00000011556) #15	WDR12 (ENSPLOG00000011514) #16	CARF (ENSPLOG00000011224) #17	NBEAL1 (ENSPLOG00000010825) #18	CYP20A1 (ENSPLOG00000010756) #19	ABI2 (ENSPLOG00000010377) #20	ENSPLOG00000010151 #21	CD28 (ENSPLOG00000010049) #22	CTLA4 (ENSPLOG00000010005) #23	ICOS (ENSPLOG00000009959) #24	ENSPLOG00000009936	PARD3B (ENSPLOG00000008780) #25	NRP2 (ENSPLOG00000008415) #26	INO80D (ENSPLOG00000008354) #27	NDUFS1 (ENSPLOG00000008138) #28	ENSPLOG00000008015	ENSPLOG00000007981 ##29	CMKLR2 (ENSPLOG00000007963) #30	ZDBF2 (ENSPLOG00000007898) #31	ENSPLOG00000007877	ADAM23 (ENSPLOG00000007574) #32	FAM237A (ENSPLOG00000007523) #33	DYTN (ENSPLOG00000007459) #34
leopard	MODERN SPECIES	12												NBEAL1 (ENSPPRG00000024650) #18	CYP20A1 (ENSPPRG00000024582) #19	ABI2 (ENSPPRG00000024330) #20	ENSPPRG00000023758 #21	CD28 (ENSPPRG00000023378) #22	CTLA4 (ENSPPRG00000023337) #23	ICOS (ENSPPRG00000023149) #24	ENSPPRG00000020852	PARD3B (ENSPPRG00000001193) #25	NRP2 (ENSPPRG00000001684) #26	INO80D (ENSPPRG00000001843) #27	NDUFS1 (ENSPPRG00000003837) #28	ENSPPRG00000004175 ##29	CMKLR2 (ENSPPRG00000020893) #30	ADAM23 (ENSPPRG00000004864) #32	FAM237A (ENSPPRG00000005451) #33	DYTN (ENSPPRG00000005491) #34	MDH1B (ENSPPRG00000005932) #35	FASTKD2 (ENSPPRG00000006075) #36	CPO (ENSPPRG00000006106) #37
Tiger	MODERN SPECIES	313	CDK15 (ENSPTIG00000013223) #7	KIAA2012 (ENSPTIG00000013192) #9	ENSPTIG00000008234	SUMO1 (ENSPTIG00000013157) ##10	NOP58 (ENSPTIG00000013131) #11	BMPR2 (ENSPTIG00000013082) #13	ENSPTIG00000008227 #14	ICA1L (ENSPTIG00000013050) #15	WDR12 (ENSPTIG00000013035) #16	CARF (ENSPTIG00000012946) #17	ENSPTIG00000008218	NBEAL1 (ENSPTIG00000012887) #18	CYP20A1 (ENSPTIG00000012850) #19	ABI2 (ENSPTIG00000012734) #20	ENSPTIG00000012473 #21	CD28 (ENSPTIG00000012428) #22	CTLA4 (ENSPTIG00000012408) #23	ICOS (ENSPTIG00000012385) #24	ENSPTIG00000008211	PARD3B (ENSPTIG00000012297) #25	NRP2 (ENSPTIG00000012139) #26	INO80D (ENSPTIG00000012089) #27	NDUFS1 (ENSPTIG00000012021) #28	ENSPTIG00000011994 ##29	CMKLR2 (ENSPTIG00000008203) #30	ADAM23 (ENSPTIG00000011931) #32	FAM237A (ENSPTIG00000011920) #33	DYTN (ENSPTIG00000011914) #34	MDH1B (ENSPTIG00000011902) #35	FASTKD2 (ENSPTIG00000011891) #36	CPO (ENSPTIG00000011884) #37
Cat	MODERN SPECIES	239	KIAA2012 (ENSFCAG00000027667) #9	ENSFCAG00000031005 ##10	NOP58 (ENSFCAG00000014093) #11	BMPR2 (ENSFCAG00000014094) #13	FAM117B (ENSFCAG00000046269) #14	ICA1L (ENSFCAG00000008514) #15	WDR12 (ENSFCAG00000026676) #16	CARF (ENSFCAG00000046458) #17	NBEAL1 (ENSFCAG00000025997) #18	ENSFCAG00000027770	ENSFCAG00000048141	CYP20A1 (ENSFCAG00000022927) #19	ABI2 (ENSFCAG00000012982) #20	RAPH1 (ENSFCAG00000019050) #21	ENSFCAG00000034107	CD28 (ENSFCAG00000014271) #22	CTLA4 (ENSFCAG00000014272) #23	ICOS (ENSFCAG00000038001) #24	PARD3B (ENSFCAG00000025870) #25	NRP2 (ENSFCAG00000000423) #26	INO80D (ENSFCAG00000022035) #27	NDUFS1 (ENSFCAG00000023344) #28	EEF1B2 (ENSFCAG00000010239) ##29	CMKLR2 (ENSFCAG00000028762) #30	ZDBF2 (ENSFCAG00000041779) #31	ADAM23 (ENSFCAG00000018551) #32	DYTN (ENSFCAG00000024422) #34	MDH1B (ENSFCAG00000015372) #35	FASTKD2 (ENSFCAG00000015373) #36	CPO (ENSFCAG00000002513) #37	KLF7 (ENSFCAG00000002514)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Equus	ANCESTRAL SPECIES	18	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT01090000263468 #12	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.g.b.b ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Horse	MODERN SPECIES	9	CDK15 (ENSECAG00000023938) #7	FZD7 (ENSECAG00000024319) #8	KIAA2012 (ENSECAG00000024325) #9	SUMO1 (ENSECAG00000024693) ##10	NOP58 (ENSECAG00000024696) #11	BMPR2 (ENSECAG00000025141) #13	ENSECAG00000054476	FAM117B (ENSECAG00000004249) #14	ICA1L (ENSECAG00000009288) #15	WDR12 (ENSECAG00000009547) #16	CARF (ENSECAG00000017624) #17	NBEAL1 (ENSECAG00000020049) #18	CYP20A1 (ENSECAG00000010884) #19	ABI2 (ENSECAG00000018236) #20	ENSECAG00000022376 #21	CD28 (ENSECAG00000022853) #22	CTLA4 (ENSECAG00000003996) #23	ICOS (ENSECAG00000006253) #24	PARD3B (ENSECAG00000008768) #25	NRP2 (ENSECAG00000016824) #26	INO80D (ENSECAG00000015076) #27	NDUFS1 (ENSECAG00000015914) #28	EEF1B2 (ENSECAG00000016653) ##29	CMKLR2 (ENSECAG00000004408) #30	ZDBF2 (ENSECAG00000039959) #31	ADAM23 (ENSECAG00000018514) #32	FAM237A (ENSECAG00000050449) #33	DYTN (ENSECAG00000006820) #34	MDH1B (ENSECAG00000007491) #35	FASTKD2 (ENSECAG00000008822) #36	KLF7 (ENSECAG00000012215)
Donkey	MODERN SPECIES	24	ENSEASG00005024896 ##10	ENSEASG00005034084 #11	NOP58 (ENSEASG00005002393) #11	ENSEASG00005035566 #12	ENSEASG00005028104	BMPR2 (ENSEASG00005002457) #13	FAM117B (ENSEASG00005031822) #14	ICA1L (ENSEASG00005002554) #15	ENSEASG00005027147 #15	WDR12 (ENSEASG00005002567) #16	CARF (ENSEASG00005002591) #17	NBEAL1 (ENSEASG00005002684) #18	CYP20A1 (ENSEASG00005002770) #19	ABI2 (ENSEASG00005002778) #20	ENSEASG00005002800 #21	CD28 (ENSEASG00005002842) #22	CTLA4 (ENSEASG00005002849) #23	ICOS (ENSEASG00005002854) #24	PARD3B (ENSEASG00005002870) #25	NRP2 (ENSEASG00005002875) #26	INO80D (ENSEASG00005002880) #27	NDUFS1 (ENSEASG00005002883) #28	EEF1B2 (ENSEASG00005026194) ##29	CMKLR2 (ENSEASG00005002916) #30	ZDBF2 (ENSEASG00005023969) #31	ADAM23 (ENSEASG00005002928) #32	FAM237A (ENSEASG00005002935) #33	DYTN (ENSEASG00005002938) #34	MDH1B (ENSEASG00005002948) #35	FASTKD2 (ENSEASG00005002958) #36	KLF7 (ENSEASG00005002973)
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Megabat	MODERN SPECIES	6648																CD28 (ENSPVAG00000005643) #22
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Greater horseshoe bat	MODERN SPECIES	26	CDK15 (ENSRFEG00010015620) #7	FZD7 (ENSRFEG00010015580) #8	KIAA2012 (ENSRFEG00010015222) #9	SUMO1 (ENSRFEG00010014996) ##10	NOP58 (ENSRFEG00010014939) #11	RPL39_1 (ENSRFEG00010014922)	BMPR2 (ENSRFEG00010014707) #13	FAM117B (ENSRFEG00010014554) #14	ICA1L (ENSRFEG00010014466) #15	WDR12 (ENSRFEG00010014405) #16	CARF (ENSRFEG00010013855) #17	NBEAL1 (ENSRFEG00010013724) #18	CYP20A1 (ENSRFEG00010013600) #19	ABI2 (ENSRFEG00010013372) #20	RAPH1 (ENSRFEG00010013239) #21	CD28 (ENSRFEG00010013138) #22	ENSRFEG00010013108 #23	ICOS (ENSRFEG00010013045) #24	PARD3B (ENSRFEG00010012777) #25	NRP2 (ENSRFEG00010012560) #26	INO80D (ENSRFEG00010012508) #27	NDUFS1 (ENSRFEG00010011973) #28	EEF1B2 (ENSRFEG00010011873) ##29	CMKLR2 (ENSRFEG00010011856) #30	ENSRFEG00010011751 #31	ADAM23 (ENSRFEG00010010998) #32	FAM237A (ENSRFEG00010010918) #33	DYTN (ENSRFEG00010010740) #34	MDH1B (ENSRFEG00010010537) #35	FASTKD2 (ENSRFEG00010010475) #36	CPO (ENSRFEG00010010427) #37
Microbat	MODERN SPECIES	940	ENSMLUG00000030619	ENSMLUG00000026446	ENSMLUG00000027037	ENSMLUG00000023829	ENSMLUG00000010834	ENSMLUG00000015108	ENSMLUG00000016762	ENSMLUG00000022794	ICA1L (ENSMLUG00000002746) #15	WDR12 (ENSMLUG00000025847) #16	CARF (ENSMLUG00000007015) #17	NBEAL1 (ENSMLUG00000007434) #18	CYP20A1 (ENSMLUG00000014996) #19	ABI2 (ENSMLUG00000008117) #20	RAPH1 (ENSMLUG00000008162) #21	CD28 (ENSMLUG00000004329) #22	CTLA4 (ENSMLUG00000009619) #23	ICOS (ENSMLUG00000009627) #24	ENSMLUG00000024002	ENSMLUG00000025717 #25	ENSMLUG00000013841 #25	ENSMLUG00000026514	ENSMLUG00000022709 #25	ENSMLUG00000028553 #25	NRP2 (ENSMLUG00000013862) #26	INO80D (ENSMLUG00000007714) #27	NDUFS1 (ENSMLUG00000016594) #28	ENSMLUG00000016602 ##29	CMKLR2 (ENSMLUG00000016607) #30	ENSMLUG00000023597	ZDBF2 (ENSMLUG00000014265) #31
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00530000063873.A #22
Common shrew	MODERN SPECIES	5656																CD28 (ENSSARG00000000791) #22
Hedgehog	MODERN SPECIES	7216																CD28 (ENSEEUG00000012479) #22
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37	ENSGT00940000155235
Xenarthra	ANCESTRAL SPECIES	686														ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26
Sloth	MODERN SPECIES	10349																CD28 (ENSCHOG00000013759) #22
Armadillo	MODERN SPECIES	1055												CYP20A1 (ENSDNOG00000009744) #19	ENSDNOG00000042764	ENSDNOG00000007878 #20	ENSDNOG00000042029 #21	CD28 (ENSDNOG00000047723) #22	CTLA4 (ENSDNOG00000006614) #23	ENSDNOG00000044126	ICOS (ENSDNOG00000049432) #24	PARD3B (ENSDNOG00000010397) #25
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854.z.b #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37	ENSGT00940000155235
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854.z.b #9	ENSGT00940000154319.v ##10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a.h ##29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37	ENSGT00940000155235
Elephant	MODERN SPECIES	301	FZD7 (ENSLAFG00000000464) #8	ENSLAFG00000000462 #9	ENSLAFG00000022855 ##10	NOP58 (ENSLAFG00000015568) #11	BMPR2 (ENSLAFG00000015201) #13	FAM117B (ENSLAFG00000006427) #14	ICA1L (ENSLAFG00000016989) #15	WDR12 (ENSLAFG00000011955) #16	CARF (ENSLAFG00000017289) #17	ENSLAFG00000020653 #18	ENSLAFG00000015098 #18	CYP20A1 (ENSLAFG00000015110) #19	ABI2 (ENSLAFG00000015117) #20	ENSLAFG00000015135 #21	ENSLAFG00000031357	CD28 (ENSLAFG00000017773) #22	CTLA4 (ENSLAFG00000006654) #23	ICOS (ENSLAFG00000006657) #24	ENSLAFG00000026263	ENSLAFG00000030813 #25	ENSLAFG00000007708 #25	ENSLAFG00000026835 #25	ENSLAFG00000025673 #25	ENSLAFG00000030808 #25	NRP2 (ENSLAFG00000016414) #26	INO80D (ENSLAFG00000015352) #27	NDUFS1 (ENSLAFG00000013782) #28	EEF1B2 (ENSLAFG00000011812) ##29	CMKLR2 (ENSLAFG00000009005) #30	ZDBF2 (ENSLAFG00000014253) #31	ADAM23 (ENSLAFG00000014452) #32
Hyrax	MODERN SPECIES	5952																ENSPCAG00000000355 #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000155877	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270.c #26	ENSGT00940000155877	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Diprotodontia	ANCESTRAL SPECIES	31	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A.a #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270.c #26	ENSGT00940000155877	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Diprotodontia_a	ANCESTRAL SPECIES	30	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A.a #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT01030000234979.a	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270.c #26	ENSGT00940000155877	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Common wonbat	MODERN SPECIES	1038	FZD7 (ENSVURG00010006641) #8	SUMO1 (ENSVURG00010006638) #10	ENSVURG00010005919 #11	BMPR2 (ENSVURG00010005868) #13	FAM117B (ENSVURG00010005827) #14	ICA1L (ENSVURG00010005759) #15	WDR12 (ENSVURG00010005744) #16	CARF (ENSVURG00010005670) #17	NBEAL1 (ENSVURG00010005633) #18	ENSVURG00010005614	CYP20A1 (ENSVURG00010005594) #19	ABI2 (ENSVURG00010005572) #20	RAPH1 (ENSVURG00010005515) #21	ENSVURG00010005495	ENSVURG00010005489	CD28 (ENSVURG00010005486) #22	CTLA4 (ENSVURG00010005475) #23	ENSVURG00010005458 #24	ENSVURG00010005443	PARD3B (ENSVURG00010005402) #25	NRP2 (ENSVURG00010005142) #26	ENSVURG00010005096	INO80D (ENSVURG00010005077) #27	NDUFS1 (ENSVURG00010005021) #28	ENSVURG00010004989 #29	CMKLR2 (ENSVURG00010004980) #30	ENSVURG00010004970	ENSVURG00010004965 #31	FAM237A (ENSVURG00010004897) #33	MDH1B (ENSVURG00010004893) #35	FASTKD2 (ENSVURG00010004867) #36
koala	MODERN SPECIES	231				NOP58 (ENSPCIG00000008839) #11	BMPR2 (ENSPCIG00000008838) #13	FAM117B (ENSPCIG00000008837) #14	ICA1L (ENSPCIG00000008836) #15	WDR12 (ENSPCIG00000008835) #16	CARF (ENSPCIG00000008833) #17	NBEAL1 (ENSPCIG00000022908) #18	ENSPCIG00000022906	CYP20A1 (ENSPCIG00000022811) #19	ABI2 (ENSPCIG00000015338) #20	ENSPCIG00000015308 #21	ENSPCIG00000015292	CD28 (ENSPCIG00000015286) #22	CTLA4 (ENSPCIG00000015278) #23	ENSPCIG00000015275 #24	PARD3B (ENSPCIG00000006317) #25	ENSPCIG00000006319	NRP2 (ENSPCIG00000006323) #26	ENSPCIG00000006327	INO80D (ENSPCIG00000006328) #27	NDUFS1 (ENSPCIG00000009914) #28	ENSPCIG00000009878 #29	CMKLR2 (ENSPCIG00000015684) #30
Wallaby	MODERN SPECIES	8605																ENSMEUG00000005606 #22
Tasmanian devil	MODERN SPECIES	2	CDK15 (ENSSHAG00000013964) #7	FZD7 (ENSSHAG00000012997) #8	ENSSHAG00000012030 #9	ENSSHAG00000022830	NOP58 (ENSSHAG00000011398) #11	BMPR2 (ENSSHAG00000009795) #13	FAM117B (ENSSHAG00000008247) #14	ICA1L (ENSSHAG00000007656) #15	WDR12 (ENSSHAG00000006960) #16	CARF (ENSSHAG00000006210) #17	NBEAL1 (ENSSHAG00000000284) #18	ENSSHAG00000021267	CYP20A1 (ENSSHAG00000028734) #19	ABI2 (ENSSHAG00000008450) #20	ENSSHAG00000007679 #21	CD28 (ENSSHAG00000028743) #22	CTLA4 (ENSSHAG00000016177) #23	ENSSHAG00000015832 #24	ENSSHAG00000024535	PARD3B (ENSSHAG00000001616) #25	ENSSHAG00000024159 #26	ENSSHAG00000018322 #26	ENSSHAG00000026001	INO80D (ENSSHAG00000029318) #27	NDUFS1 (ENSSHAG00000017865) #28	EEF1B2 (ENSSHAG00000017853) #29	CMKLR2 (ENSSHAG00000021936) #30	ENSSHAG00000028209 #31	ADAM23 (ENSSHAG00000017245) #32	FAM237A (ENSSHAG00000017064) #33	MDH1B (ENSSHAG00000016820) #35
Opossum	MODERN SPECIES	6	ENSMODG00000025491 #9	SUMO1 (ENSMODG00000045712) #10	NOP58 (ENSMODG00000016294) #11	ENSMODG00000040173	BMPR2 (ENSMODG00000016287) #13	FAM117B (ENSMODG00000016284) #14	ICA1L (ENSMODG00000016279) #15	WDR12 (ENSMODG00000016275) #16	CARF (ENSMODG00000016272) #17	ENSMODG00000047566	NBEAL1 (ENSMODG00000016268) #18	ENSMODG00000037522	CYP20A1 (ENSMODG00000016255) #19	ABI2 (ENSMODG00000016244) #20	ENSMODG00000016237 #21	CD28 (ENSMODG00000016234) #22	CTLA4 (ENSMODG00000016230) #23	ENSMODG00000025487 #24	ENSMODG00000024816	ENSMODG00000024817	PARD3B (ENSMODG00000016213) #25	NRP2 (ENSMODG00000016052) #26	ENSMODG00000016028	INO80D (ENSMODG00000016027) #27	NDUFS1 (ENSMODG00000016019) #28	EEF1B2 (ENSMODG00000016012) #29	GPR1 (ENSMODG00000046264) #30	ADAM23 (ENSMODG00000016005) #32	FAM237A (ENSMODG00000027693) #33	ENSMODG00000016001 #35	FASTKD2 (ENSMODG00000015997) #36
Platypus	MODERN SPECIES	18	CDK15 (ENSOANG00000022134) #7	ENSOANG00000049358	SUMO1 (ENSOANG00000042366) #10	NOP58 (ENSOANG00000002420) #11	BMPR2 (ENSOANG00000012302) #13	FAM117B (ENSOANG00000036215) #14	ICA1L (ENSOANG00000011099) #15	WDR12 (ENSOANG00000011097) #16	CARF (ENSOANG00000011095) #17	NBEAL1 (ENSOANG00000011085) #18	ENSOANG00000009001	CYP20A1 (ENSOANG00000015019) #19	ABI2 (ENSOANG00000001380) #20	ENSOANG00000006769 #21	ENSOANG00000048576	CD28 (ENSOANG00000040633) #22	CTLA4 (ENSOANG00000010895) #23	ENSOANG00000007435 #24	ENSOANG00000041151	PARD3B (ENSOANG00000014041) #25	ENSOANG00000044745 #25	NRP2 (ENSOANG00000012962) #26	ENSOANG00000038688	INO80D (ENSOANG00000012965) #27	NDUFS1 (ENSOANG00000002321) #28	EEF1B2 (ENSOANG00000012964) #29	CMKLR2 (ENSOANG00000012797) #30	ADAM23 (ENSOANG00000000660) #32	FAM237A (ENSOANG00000045785) #33	MDH1B (ENSOANG00000000659) #35	ENSOANG00000020472 #36
Sauria	ANCESTRAL SPECIES	32	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00390000003964.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00390000003964.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235
Episquamata	ANCESTRAL SPECIES		ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235	ENSGT00940000155408
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00930000150950.b #16	ENSGT00950000185065	ENSGT00390000003964.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Elapidae	ANCESTRAL SPECIES		ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00930000150950.b #16	ENSGT00950000185065	ENSGT00390000003964.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089.g #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00930000150950.b #16	ENSGT00950000185065	ENSGT00390000003964.b	ENSGT00940000155041.k #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089.g #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00940000156444	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00930000150950.b #16	ENSGT00390000003964.b	ENSGT00940000155041.k #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089.g #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00960000192985
Eastern brown snake	MODERN SPECIES	7	FZD7 (ENSPTXG00000001949) #8	SUMO1 (ENSPTXG00000001946) #10	NOP58 (ENSPTXG00000001936) #11	BMPR2 (ENSPTXG00000001478) #13	FAM117B (ENSPTXG00000001469) #14	WDR12 (ENSPTXG00000001465) #16	ENSPTXG00000001462	ENSPTXG00000001457	ENSPTXG00000001453	NBEAL1 (ENSPTXG00000000682) #18	ENSPTXG00000000572	ABI2 (ENSPTXG00000000562) #20	RAPH1 (ENSPTXG00000000537) #21	ENSPTXG00000000517	ENSPTXG00000000508	CD28 (ENSPTXG00000000498) #22	ENSPTXG00000000487 #23	ENSPTXG00000000482
Mainland tiger snake	MODERN SPECIES	150	MPP4 (ENSNSUG00000009382)	ALS2 (ENSNSUG00000009379)	CDK15 (ENSNSUG00000009376) #7	FZD7 (ENSNSUG00000009374) #8	SUMO1 (ENSNSUG00000009373) #10	NOP58 (ENSNSUG00000009368) #11	BMPR2 (ENSNSUG00000009356) #13	FAM117B (ENSNSUG00000009353) #14	WDR12 (ENSNSUG00000009351) #16	ENSNSUG00000009349	ENSNSUG00000009348 #18	ENSNSUG00000009347	CYP20A1 (ENSNSUG00000009346) #19	ABI2 (ENSNSUG00000009335) #20	RAPH1 (ENSNSUG00000009331) #21	ENSNSUG00000009323 #22	ENSNSUG00000009322 #23	ENSNSUG00000009321
Blue-lipped sea krait	MODERN SPECIES	7330																ENSLLTG00000008160 #22
Indian cobra	MODERN SPECIES		ENSNNAG00000009075	CDK15 (ENSNNAG00000009009) #7	FZD7 (ENSNNAG00000008987) #8	ENSNNAG00000008934 #9	SUMO1 (ENSNNAG00000008916) #10	NOP58 (ENSNNAG00000008788) #11	BMPR2 (ENSNNAG00000008749) #13	FAM117B (ENSNNAG00000008713) #14	WDR12 (ENSNNAG00000008654) #16	ENSNNAG00000008600	NBEAL1 (ENSNNAG00000008400) #18	ENSNNAG00000008350	CYP20A1 (ENSNNAG00000008325) #19	ABI2 (ENSNNAG00000008284) #20	RAPH1 (ENSNNAG00000007996) #21	CD28 (ENSNNAG00000007953) #22	CTLA4 (ENSNNAG00000007939) #23	ICOS (ENSNNAG00000007918) #24	ENSNNAG00000007910	PARD3B (ENSNNAG00000007817) #25	NRP2 (ENSNNAG00000007682) #26	INO80D (ENSNNAG00000007613) #27	NDUFS1 (ENSNNAG00000007093) #28	EEF1B2 (ENSNNAG00000006992) #29	CMKLR2 (ENSNNAG00000006981) #30	ADAM23 (ENSNNAG00000006219) #32	MDH1B (ENSNNAG00000006119) #35	FASTKD2 (ENSNNAG00000006083) #36	KLF7 (ENSNNAG00000006050)	CREB1 (ENSNNAG00000006029)	METTL21A (ENSNNAG00000005999)
Lizard	MODERN SPECIES	822	ENSACAG00000024914 #9	SUMO1 (ENSACAG00000005177) #10	NOP58 (ENSACAG00000005194) #11	BMPR2 (ENSACAG00000004885) #13	FAM117B (ENSACAG00000004859) #14	WDR12 (ENSACAG00000004774) #16	ENSACAG00000004755	ENSACAG00000043702	ENSACAG00000037627	NBEAL1 (ENSACAG00000004721) #18	ENSACAG00000004658	CYP20A1 (ENSACAG00000004604) #19	ENSACAG00000045333	ABI2 (ENSACAG00000004539) #20	RAPH1 (ENSACAG00000004500) #21	CD28 (ENSACAG00000004486) #22	ENSACAG00000028063 #23	ENSACAG00000037252	PARD3B (ENSACAG00000004428) #25	NRP2 (ENSACAG00000004128) #26	INO80D (ENSACAG00000004095) #27	NDUFS1 (ENSACAG00000001471) #28	CMKLR2 (ENSACAG00000001415) #30	EEF1B2 (ENSACAG00000001423) #29	ADAM23 (ENSACAG00000009477) #32	ENSACAG00000028631 #34	MDH1B (ENSACAG00000009563) #35	FASTKD2 (ENSACAG00000009610) #36	KLF7 (ENSACAG00000009642)
Laterata	ANCESTRAL SPECIES	42	ENSGT00940000156444	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00950000183314	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Common wall lizard	MODERN SPECIES		CDK15 (ENSPMRG00000006777) #7	FZD7 (ENSPMRG00000006785) #8	ENSPMRG00000006788	NOP58 (ENSPMRG00000006794) #11	BMPR2 (ENSPMRG00000006815) #13	ENSPMRG00000006832	ENSPMRG00000006842 ##15	WDR12 (ENSPMRG00000006856) #16	ENSPMRG00000006909	CARF (ENSPMRG00000006921) #17	ENSPMRG00000006930	NBEAL1 (ENSPMRG00000007358) #18	CYP20A1 (ENSPMRG00000008728) #19	ABI2 (ENSPMRG00000008747) #20	RAPH1 (ENSPMRG00000008789) #21	CD28 (ENSPMRG00000008873) #22	CTLA4 (ENSPMRG00000008883) #23	PARD3B (ENSPMRG00000008900) #25	ENSPMRG00000008928	ENSPMRG00000008932	NRP2 (ENSPMRG00000008950) #26	INO80D (ENSPMRG00000009029) #27	EEF1B2 (ENSPMRG00000009046) #29	NDUFS1 (ENSPMRG00000009096) #28	ADAM23 (ENSPMRG00000009258) #32	FAM237A (ENSPMRG00000009266) #33	DYTN (ENSPMRG00000000114) #34	ENSPMRG00000000134 #35	ENSPMRG00000000143 #35	FASTKD2 (ENSPMRG00000000149) #36	KLF7 (ENSPMRG00000000188)
tuatara	MODERN SPECIES	628				BMPR2 (ENSSPUG00000013346) #13	FAM117B (ENSSPUG00000013362) #14	ICA1L (ENSSPUG00000013372) #15	WDR12 (ENSSPUG00000013386) #16	CARF (ENSSPUG00000013402) #17	ENSSPUG00000013470	ENSSPUG00000013489	NBEAL1 (ENSSPUG00000013527) #18	ENSSPUG00000013715	CYP20A1 (ENSSPUG00000013726) #19	ABI2 (ENSSPUG00000013744) #20	RAPH1 (ENSSPUG00000013770) #21	CD28 (ENSSPUG00000013791) #22	CTLA4 (ENSSPUG00000013826) #23
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00390000003964.b	ENSGT00950000185065	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00950000185065	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00950000185065	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00940000158239.b #8	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00950000185065	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000176171	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35
Abingdon island giant tortoise	MODERN SPECIES	2581																CD28 (ENSCABG00000015431) #22	CTLA4 (ENSCABG00000015422) #23	ICOS (ENSCABG00000015421) #24	ENSCABG00000015417	ENSCABG00000015413	AS3MT (ENSCABG00000015410)	BORCS7 (ENSCABG00000015406)	CYP17A1 (ENSCABG00000015403)	WBP1L (ENSCABG00000015402)	SFXN2 (ENSCABG00000015400)
Goode s thornscrub tortoise	MODERN SPECIES	2	FZD7 (ENSGEVG00005011937) #8	SUMO1 (ENSGEVG00005011902) #10	NOP58 (ENSGEVG00005011819) #11	BMPR2 (ENSGEVG00005011391) #13	FAM117B (ENSGEVG00005011292) #14	ICA1L (ENSGEVG00005011235) #15	WDR12 (ENSGEVG00005011195) #16	CARF (ENSGEVG00005011158) #17	ENSGEVG00005011079	NBEAL1 (ENSGEVG00005007841) #18	ENSGEVG00005007312	CYP20A1 (ENSGEVG00005007271) #19	ENSGEVG00005007253	ABI2 (ENSGEVG00005007221) #20	RAPH1 (ENSGEVG00005007171) #21	CD28 (ENSGEVG00005007000) #22	CTLA4 (ENSGEVG00005006968) #23	ICOS (ENSGEVG00005006946) #24	PARD3B (ENSGEVG00005006583) #25	ENSGEVG00005006463	NRP2 (ENSGEVG00005006393) #26	INO80D (ENSGEVG00005006347) #27	NDUFS1 (ENSGEVG00005006314) #28	EEF1B2 (ENSGEVG00005006284) #29	CMKLR2 (ENSGEVG00005006269) #30	ENSGEVG00005006255 #31	ADAM23 (ENSGEVG00005006163) #32	FAM237A (ENSGEVG00005006142) #33	DYTN (ENSGEVG00005006111) #34	MDH1B (ENSGEVG00005006096) #35	FASTKD2 (ENSGEVG00005006068) #36
Emydidae	ANCESTRAL SPECIES	4	ENSGT00940000158239.b #8	ENSGT00860000133854 #9	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00390000005530.a.a #15	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00950000185065	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Three-toed box turtle	MODERN SPECIES	25	ALS2 (ENSTMTG00000010542)	CDK15 (ENSTMTG00000010659) #7	FZD7 (ENSTMTG00000010912) #8	SUMO1 (ENSTMTG00000010925) #10	NOP58 (ENSTMTG00000010944) #11	BMPR2 (ENSTMTG00000011025) #13	FAM117B (ENSTMTG00000011056) #14	ICA1L (ENSTMTG00000011077) #15	WDR12 (ENSTMTG00000011113) #16	CARF (ENSTMTG00000011136) #17	ENSTMTG00000011258	NBEAL1 (ENSTMTG00000011535) #18	ENSTMTG00000000064	ABI2 (ENSTMTG00000000124) #20	RAPH1 (ENSTMTG00000000330) #21	CD28 (ENSTMTG00000000707) #22	CTLA4 (ENSTMTG00000000717) #23	ICOS (ENSTMTG00000000728) #24	PARD3B (ENSTMTG00000000749) #25	NRP2 (ENSTMTG00000000762) #26	INO80D (ENSTMTG00000000797) #27	NDUFS1 (ENSTMTG00000000828) #28	EEF1B2 (ENSTMTG00000000857) #29	CMKLR2 (ENSTMTG00000000886) #30	ADAM23 (ENSTMTG00000000910) #32	FAM237A (ENSTMTG00000000963) #33	DYTN (ENSTMTG00000000982) #34	MDH1B (ENSTMTG00000001002) #35	FASTKD2 (ENSTMTG00000001072) #36	CPO (ENSTMTG00000001098) #37	KLF7 (ENSTMTG00000001122)
painted turtle	MODERN SPECIES	2	KIAA2012 (ENSCPBG00000011578) #9	SUMO1 (ENSCPBG00000011575) #10	NOP58 (ENSCPBG00000011565) #11	BMPR2 (ENSCPBG00000011298) #13	ENSCPBG00000011285 #14	ENSCPBG00000011283 #14	ICA1L (ENSCPBG00000011260) #15	WDR12 (ENSCPBG00000011256) #16	CARF (ENSCPBG00000011242) #17	ENSCPBG00000011238	NBEAL1 (ENSCPBG00000008970) #18	ENSCPBG00000008883	CYP20A1 (ENSCPBG00000008879) #19	ABI2 (ENSCPBG00000008865) #20	RAPH1 (ENSCPBG00000008797) #21	CD28 (ENSCPBG00000008786) #22	CTLA4 (ENSCPBG00000008783) #23	ICOS (ENSCPBG00000008777) #24	PARD3B (ENSCPBG00000008767) #25
Chinese turtle	MODERN SPECIES	1748																CD28 (ENSPSIG00000008228) #22
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000155861.C	ENSGT00940000159606 #7	ENSGT00940000158239.b #8	ENSGT00940000154319 #10	ENSGT00940000153534.A #11	ENSGT00940000156449 #13	ENSGT00950000183046.a.a #14	ENSGT00930000150950.b #16	ENSGT00390000013916 #17	ENSGT00950000185065	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Aves	ANCESTRAL SPECIES	8	ENSGT00640000091496	ENSGT00940000156597.b	ENSGT00940000159094	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000159232	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Anatidae	ANCESTRAL SPECIES	10	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37	ENSGT00940000155235	ENSGT00940000155408.b
Duck	MODERN SPECIES	25	PDE1A (ENSAPLG00000012827)	ENSAPLG00000013405	ENSAPLG00000028706	PIKFYVE (ENSAPLG00000014164)	IDH1 (ENSAPLG00000014810)	ENSAPLG00000015011	ENSAPLG00000018471	ENSAPLG00000024504	ENSAPLG00000017302 #18	ENSAPLG00000027901 #18	ENSAPLG00000025723	ENSAPLG00000025132	CYP20A1 (ENSAPLG00000015942) #19	ABI2 (ENSAPLG00000016216) #20	RAPH1 (ENSAPLG00000000860) #21	CD28 (ENSAPLG00000001723) #22	CTLA4 (ENSAPLG00000001966) #23	ICOS (ENSAPLG00000002410) #24	PARD3B (ENSAPLG00000002583) #25	NRP2 (ENSAPLG00000002735) #26	INO80D (ENSAPLG00000004131) #27	NDUFS1 (ENSAPLG00000004262) #28	EEF1B2 (ENSAPLG00000004841) #29	CMKLR2 (ENSAPLG00000001630) #30	ADAM23 (ENSAPLG00000005205) #32	FAM237A (ENSAPLG00000005882) #33	ENSAPLG00000005888	MDH1B (ENSAPLG00000006087) #35	FASTKD2 (ENSAPLG00000006177) #36	CPO (ENSAPLG00000006729) #37	KLF7 (ENSAPLG00000006752)
Pink-footed goose	MODERN SPECIES	120														ABI2 (ENSABRG00000018029) #20	RAPH1 (ENSABRG00000018013) #21	CD28 (ENSABRG00000018006) #22	CTLA4 (ENSABRG00000018000) #23	ICOS (ENSABRG00000017991) #24	PARD3B (ENSABRG00000017834) #25	NRP2 (ENSABRG00000017280) #26	INO80D (ENSABRG00000017222) #27	NDUFS1 (ENSABRG00000017107) #28	EEF1B2 (ENSABRG00000017085) #29	CMKLR2 (ENSABRG00000017081) #30	ADAM23 (ENSABRG00000016867) #32	FAM237A (ENSABRG00000016843) #33	MDH1B (ENSABRG00000016828) #35	FASTKD2 (ENSABRG00000016816) #36	CPO (ENSABRG00000016806) #37	KLF7 (ENSABRG00000016797)	CREB1 (ENSABRG00000016788)
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Japanese quail	MODERN SPECIES	25	WDR12 (ENSCJPG00005015343) #16	CARF (ENSCJPG00005015344) #17	PLEKHM3 (ENSCJPG00005015346)	ENSCJPG00005015348	ENSCJPG00005015349	METTL21A (ENSCJPG00005015350)	CREB1 (ENSCJPG00005015351)	KLF7 (ENSCJPG00005015354)	CPO (ENSCJPG00005015355) #37	FASTKD2 (ENSCJPG00005015357) #36	MDH1B (ENSCJPG00005015360) #35	ADAM23 (ENSCJPG00005015363) #32	CMKLR2 (ENSCJPG00005015367) #30	RAPH1 (ENSCJPG00005015370) #21	ENSCJPG00005015375	CD28 (ENSCJPG00005015378) #22	CTLA4 (ENSCJPG00005015379) #23	ICOS (ENSCJPG00005015381) #24	PARD3B (ENSCJPG00005015409) #25	ENSCJPG00005015846	ENSCJPG00005015847	ENSCJPG00005015848	NRP2 (ENSCJPG00005015851) #26	INO80D (ENSCJPG00005015857) #27	NDUFS1 (ENSCJPG00005015858) #28	EEF1B2 (ENSCJPG00005015859) #29	ABI2 (ENSCJPG00005015864) #20	CYP20A1 (ENSCJPG00005015897) #19	ENSCJPG00005015898	NBEAL1 (ENSCJPG00005015909) #18	ENSCJPG00005016282
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Chicken	MODERN SPECIES	36	ITGA4 (ENSGALG00010026062)	CERKL (ENSGALG00010026044)	NEUROD1 (ENSGALG00010026026)	ITPRID2 (ENSGALG00010022406)	PPP1R1C (ENSGALG00010022396)	PDE1A (ENSGALG00010022334)	DNAJC10 (ENSGALG00010022293)	PIKFYVE (ENSGALG00010022245)	IDH1 (ENSGALG00010022213)	ENSGALG00010022181	NBEAL1 (ENSGALG00010022149) #18	ENSGALG00010022124	CYP20A1 (ENSGALG00010022116) #19	ABI2 (ENSGALG00010022079) #20	RAPH1 (ENSGALG00010022033) #21	CD28 (ENSGALG00010021995) #22	CTLA4 (ENSGALG00010021983) #23	ICOS (ENSGALG00010021971) #24	PARD3B (ENSGALG00010021734) #25	NRP2 (ENSGALG00010026008) #26	INO80D (ENSGALG00010025994) #27	NDUFS1 (ENSGALG00010025984) #28	EEF1B2 (ENSGALG00010025974) #29	GPR1 (ENSGALG00010025960) #30	ENSGALG00010025836 #31	ADAM23 (ENSGALG00010026825) #32	FAM237A (ENSGALG00010025900) #33	DYTN (ENSGALG00010025894) #34	MDH1B (ENSGALG00010025874) #35	FASTKD2 (ENSGALG00010025869) #36	CPO (ENSGALG00010025855) #37
Turkey	MODERN SPECIES	27	UBE2E3 (ENSMGAG00000009214)	ENSMGAG00000009146	CERKL (ENSMGAG00000009130)	ITPRID2 (ENSMGAG00000009083)	PPP1R1C (ENSMGAG00000009069)	PDE1A (ENSMGAG00000009032)	ENSMGAG00000008939	ENSMGAG00000008920	ENSMGAG00000008985	ENSMGAG00000019768	NBEAL1 (ENSMGAG00000008870) #18	ENSMGAG00000019797	CYP20A1 (ENSMGAG00000008831) #19	ABI2 (ENSMGAG00000008821) #20	RAPH1 (ENSMGAG00000008794) #21	CD28 (ENSMGAG00000008783) #22	CTLA4 (ENSMGAG00000008759) #23	ICOS (ENSMGAG00000008751) #24	ENSMGAG00000021009 #26	PARD3B (ENSMGAG00000008728) #25	INO80D (ENSMGAG00000008621) #27	NDUFS1 (ENSMGAG00000008573) #28	EEF1B2 (ENSMGAG00000008548) #29	CMKLR2 (ENSMGAG00000016159) #30	ADAM23 (ENSMGAG00000008433) #32	FAM237A (ENSMGAG00000020531) #33	MDH1B (ENSMGAG00000008532) #35	FASTKD2 (ENSMGAG00000008516) #36	CPO (ENSMGAG00000008430) #37	KLF7 (ENSMGAG00000008396)	CREB1 (ENSMGAG00000008360)
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000157578.p	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000157578.p	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Medium ground finch	MODERN SPECIES	1	ITGA4 (ENSGFOG00000003107)	ENSGFOG00000004303	NEUROD1 (ENSGFOG00000004323)	ITPRID2 (ENSGFOG00000004331)	PPP1R1C (ENSGFOG00000004599)	PDE1A (ENSGFOG00000004634)	DNAJC10 (ENSGFOG00000004722)	PIKFYVE (ENSGFOG00000004768)	IDH1 (ENSGFOG00000004936)	ENSGFOG00000004948	NBEAL1 (ENSGFOG00000005037) #18	ENSGFOG00000006136	CYP20A1 (ENSGFOG00000006144) #19	ABI2 (ENSGFOG00000006158) #20	RAPH1 (ENSGFOG00000006191) #21	CD28 (ENSGFOG00000006204) #22	CTLA4 (ENSGFOG00000006210) #23	ICOS (ENSGFOG00000006216) #24	ENSGFOG00000006219	PARD3B (ENSGFOG00000006247) #25	NRP2 (ENSGFOG00000006567) #26	INO80D (ENSGFOG00000006596) #27	NDUFS1 (ENSGFOG00000006610) #28	EEF1B2 (ENSGFOG00000006636) #29	ENSGFOG00000006645	CMKLR2 (ENSGFOG00000006655) #30	ADAM23 (ENSGFOG00000006668) #32	FAM237A (ENSGFOG00000006747) #33	DYTN (ENSGFOG00000006753) #34	MDH1B (ENSGFOG00000006762) #35	FASTKD2 (ENSGFOG00000006769) #36
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00970000193449	ENSGT00940000160642 #30	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37	ENSGT00940000155235
Zebra finch	MODERN SPECIES	29	CERKL (ENSTGUG00000009459)	NEUROD1 (ENSTGUG00000018920)	ITPRID2 (ENSTGUG00000009469)	PPP1R1C (ENSTGUG00000025209)	PDE1A (ENSTGUG00000009501)	DNAJC10 (ENSTGUG00000009565)	PIKFYVE (ENSTGUG00000009607)	ENSTGUG00000028065	IDH1 (ENSTGUG00000023800)	ENSTGUG00000018851	NBEAL1 (ENSTGUG00000029141) #18	ENSTGUG00000025723	CYP20A1 (ENSTGUG00000009709) #19	ABI2 (ENSTGUG00000009728) #20	RAPH1 (ENSTGUG00000009747) #21	CD28 (ENSTGUG00000016732) #22	CTLA4 (ENSTGUG00000009756) #23	ICOS (ENSTGUG00000009766) #24	ENSTGUG00000025370	PARD3B (ENSTGUG00000009770) #25	NRP2 (ENSTGUG00000009797) #26	INO80D (ENSTGUG00000009890) #27	NDUFS1 (ENSTGUG00000009895) #28	EEF1B2 (ENSTGUG00000009931) #29	CMKLR2 (ENSTGUG00000009954) #30	ADAM23 (ENSTGUG00000009963) #32	DYTN (ENSTGUG00000027316) #34	FAM237A (ENSTGUG00000009992) #33	MDH1B (ENSTGUG00000009999) #35	FASTKD2 (ENSTGUG00000010004) #36	CPO (ENSTGUG00000010012) #37
Common canary	MODERN SPECIES	8	ENSSCAG00000001329	ENSSCAG00000001339	NEUROD1 (ENSSCAG00000001352)	ITPRID2 (ENSSCAG00000001386)	PPP1R1C (ENSSCAG00000001436)	PDE1A (ENSSCAG00000001471)	DNAJC10 (ENSSCAG00000001534)	PIKFYVE (ENSSCAG00000001572)	IDH1 (ENSSCAG00000001636)	ENSSCAG00000001645	NBEAL1 (ENSSCAG00000001665) #18	ENSSCAG00000001706	CYP20A1 (ENSSCAG00000001710) #19	ABI2 (ENSSCAG00000001723) #20	RAPH1 (ENSSCAG00000001749) #21	CD28 (ENSSCAG00000001788) #22	CTLA4 (ENSSCAG00000001805) #23	ICOS (ENSSCAG00000001811) #24	PARD3B (ENSSCAG00000001874) #25	NRP2 (ENSSCAG00000002055) #26	INO80D (ENSSCAG00000002336) #27	NDUFS1 (ENSSCAG00000002344) #28	EEF1B2 (ENSSCAG00000002352) #29	ENSSCAG00000002359	CMKLR2 (ENSSCAG00000002370) #30	ADAM23 (ENSSCAG00000002375) #32	FAM237A (ENSSCAG00000002412) #33	MDH1B (ENSSCAG00000002419) #35	FASTKD2 (ENSSCAG00000002424) #36	CPO (ENSSCAG00000002428) #37	KLF7 (ENSSCAG00000002434)
Flycatcher	MODERN SPECIES	26	ITPRID2 (ENSFALG00000003571)	PPP1R1C (ENSFALG00000028115)	PDE1A (ENSFALG00000003586)	ENSFALG00000003612	ENSFALG00000027401	ENSFALG00000003616	ENSFALG00000003629	ENSFALG00000003640	ENSFALG00000023124	ENSFALG00000023047 #18	ENSFALG00000003658 #18	ENSFALG00000003669	CYP20A1 (ENSFALG00000003678) #19	ABI2 (ENSFALG00000003705) #20	RAPH1 (ENSFALG00000003713) #21	CD28 (ENSFALG00000003718) #22	CTLA4 (ENSFALG00000003729) #23	ICOS (ENSFALG00000003743) #24	PARD3B (ENSFALG00000003749) #25	ENSFALG00000024358	NRP2 (ENSFALG00000003789) #26	INO80D (ENSFALG00000003838) #27	NDUFS1 (ENSFALG00000003849) #28	EEF1B2 (ENSFALG00000003879) #29	CMKLR2 (ENSFALG00000015287) #30	ADAM23 (ENSFALG00000003913) #32	FAM237A (ENSFALG00000003948) #33	DYTN (ENSFALG00000003952) #34	MDH1B (ENSFALG00000003957) #35	FASTKD2 (ENSFALG00000003964) #36	CPO (ENSFALG00000003980) #37
Great tit	MODERN SPECIES	27	ENSPMJG00000018358	ENSPMJG00000018357	NEUROD1 (ENSPMJG00000018356)	ITPRID2 (ENSPMJG00000018354)	PPP1R1C (ENSPMJG00000018351)	PDE1A (ENSPMJG00000018348)	DNAJC10 (ENSPMJG00000018346)	PIKFYVE (ENSPMJG00000018335)	IDH1 (ENSPMJG00000018333)	ENSPMJG00000018332	NBEAL1 (ENSPMJG00000018330) #18	ENSPMJG00000018329	CYP20A1 (ENSPMJG00000018328) #19	ABI2 (ENSPMJG00000018327) #20	RAPH1 (ENSPMJG00000018308) #21	CD28 (ENSPMJG00000018298) #22	CTLA4 (ENSPMJG00000018297) #23	ICOS (ENSPMJG00000018295) #24	PARD3B (ENSPMJG00000018290) #25	NRP2 (ENSPMJG00000018287) #26	INO80D (ENSPMJG00000018285) #27	NDUFS1 (ENSPMJG00000018281) #28	EEF1B2 (ENSPMJG00000018274) #29	CMKLR2 (ENSPMJG00000018273) #30	ADAM23 (ENSPMJG00000018267) #32	FAM237A (ENSPMJG00000018264) #33	DYTN (ENSPMJG00000018263) #34	MDH1B (ENSPMJG00000018262) #35	FASTKD2 (ENSPMJG00000018261) #36	CPO (ENSPMJG00000018259) #37	KLF7 (ENSPMJG00000018257)
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #18	ENSGT00390000017619	ENSGT00500000044939 #19	ENSGT00940000156089 #20	ENSGT00940000156552 #21	ENSGT00530000063873.A #22	ENSGT00530000063873.B #23	ENSGT00390000000801 #24	ENSGT00950000183214.a.b.a.b #25	ENSGT00940000155270 #26	ENSGT00940000157974 #27	ENSGT00940000153514.b #28	ENSGT00950000183014.f.a #29	ENSGT00940000160642 #30	ENSGT00440000037606.b #31	ENSGT00940000158781 #32	ENSGT00390000015769.B #33	ENSGT00940000162403 #34	ENSGT00530000063410.b #35	ENSGT01030000234607.A.b #36	ENSGT00940000161508 #37
Golden eagle	MODERN SPECIES	22	NEUROD1 (ENSACCG00020002645)	ITPRID2 (ENSACCG00020002630)	PDE1A (ENSACCG00020002575)	DNAJC10 (ENSACCG00020002475)	PIKFYVE (ENSACCG00020002433)	IDH1 (ENSACCG00020002412)	ENSACCG00020002399	ENSACCG00020002387	ENSACCG00020002374	ENSACCG00020002359	NBEAL1 (ENSACCG00020001867) #18	ENSACCG00020001270	CYP20A1 (ENSACCG00020001252) #19	ABI2 (ENSACCG00020001210) #20	RAPH1 (ENSACCG00020001057) #21	CD28 (ENSACCG00020000853) #22	CTLA4 (ENSACCG00020000823) #23	ICOS (ENSACCG00020000759) #24	PARD3B (ENSACCG00020000685) #25	NRP2 (ENSACCG00020000561) #26	INO80D (ENSACCG00020000521) #27	NDUFS1 (ENSACCG00020000486) #28	EEF1B2 (ENSACCG00020000452) #29	CMKLR2 (ENSACCG00020000445) #30	ADAM23 (ENSACCG00020000416) #32	FAM237A (ENSACCG00020000352) #33	DYTN (ENSACCG00020000333) #34	MDH1B (ENSACCG00020000316) #35	FASTKD2 (ENSACCG00020003396) #36	CPO (ENSACCG00020003371) #37	KLF7 (ENSACCG00020003351)
African ostrich	MODERN SPECIES	1071	ACADL (ENSSCUG00000013211)	KANSL1L (ENSSCUG00000013205)	ENSSCUG00000013202	UNC80 (ENSSCUG00000013197)	MAP2 (ENSSCUG00000013191)	PTH2R (ENSSCUG00000013187)	PIKFYVE (ENSSCUG00000013177)	IDH1 (ENSSCUG00000013175)	ENSSCUG00000013173	C2orf80 (ENSSCUG00000013171)	ENSSCUG00000013166	ENSSCUG00000013162	NBEAL1 (ENSSCUG00000013063) #18	ABI2 (ENSSCUG00000013010) #20	RAPH1 (ENSSCUG00000013003) #21	CD28 (ENSSCUG00000012996) #22	CTLA4 (ENSSCUG00000012995) #23	ENSSCUG00000012993 #24	PARD3B (ENSSCUG00000012989) #25
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	66	CDK15 (ENSCPRG00005001304) #7	FZD7 (ENSCPRG00005001330) #8	SUMO1 (ENSCPRG00005001337) #10	NOP58 (ENSCPRG00005001353) #11	BMPR2 (ENSCPRG00005001396) #13	FAM117B (ENSCPRG00005001420) #14	ENSCPRG00005001426	WDR12 (ENSCPRG00005001450) #16	CARF (ENSCPRG00005001462) #17	ENSCPRG00005001474	NBEAL1 (ENSCPRG00005001495) #18	ENSCPRG00005001521	CYP20A1 (ENSCPRG00005001526) #19	ABI2 (ENSCPRG00005001556) #20	RAPH1 (ENSCPRG00005001588) #21	CD28 (ENSCPRG00005001690) #22	CTLA4 (ENSCPRG00005001699) #23	ICOS (ENSCPRG00005001703) #24	ENSCPRG00005001708	PARD3B (ENSCPRG00005001781) #25	NRP2 (ENSCPRG00005001802) #26	INO80D (ENSCPRG00005001847) #27	NDUFS1 (ENSCPRG00005001849) #28	EEF1B2 (ENSCPRG00005001854) #29	CMKLR2 (ENSCPRG00005001863) #30	ADAM23 (ENSCPRG00005001887) #32	FAM237A (ENSCPRG00005001904) #33	DYTN (ENSCPRG00005001912) #34	MDH1B (ENSCPRG00005001923) #35	FASTKD2 (ENSCPRG00005001926) #36	CPO (ENSCPRG00005001934) #37
Australian saltwater crocodile	MODERN SPECIES	31	HEXA (ENSCPRG00005005818)	ARIH1 (ENSCPRG00005005882)	BBS4 (ENSCPRG00005006155)	ADPGK (ENSCPRG00005006350)	ENSCPRG00005006367	ENSCPRG00005006396	ENSCPRG00005006405	ENSCPRG00005006409	ENSCPRG00005006424	ENSCPRG00005006437	ENSCPRG00005006440	ENSCPRG00005006446	ENSCPRG00005006449	ENSCPRG00005006451	ENSCPRG00005006458	ENSCPRG00005006482 #22	ENSCPRG00005006566	ENSCPRG00005006579	ENSCPRG00005006686	ENSCPRG00005006693	ENSCPRG00005006705	ENSCPRG00005006707	ENSCPRG00005006717	ENSCPRG00005006733	ENSCPRG00005006738	ENSCPRG00005006911	ENSCPRG00005007889	ENSCPRG00005007924	ENSCPRG00005007940	ENSCPRG00005007944	ENSCPRG00005007951