Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES	732																ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Sarcopterygii	ANCESTRAL SPECIES	650																ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Tetrapoda	ANCESTRAL SPECIES	78	ENSGT00940000156491.a	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000166976	ENSGT00940000155086.C	ENSGT00940000153804.A
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634
Mammalia	ANCESTRAL SPECIES	84	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Theria	ANCESTRAL SPECIES	75														ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00950000185082	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00950000185082	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164057	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00950000185082	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36
Euarchontoglires	ANCESTRAL SPECIES	24	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Primates	ANCESTRAL SPECIES	25	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Haplorrhini	ANCESTRAL SPECIES	27	ENSGT00940000156716	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Simiiformes	ANCESTRAL SPECIES	25	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.r #14	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.r #14	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00940000156208	ENSGT00910000147586	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.r #14	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b.c #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Macaca	ANCESTRAL SPECIES	14	ENSGT00940000156208	ENSGT00910000147586	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.r #14	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b.c #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Pig-tailed macaque	MODERN SPECIES	579	GNRH1 (ENSMNEG00000042496) #7	KCTD9 (ENSMNEG00000044328) #8	CDCA2 (ENSMNEG00000036287) #9	ENSMNEG00000035457 #10	EBF2 (ENSMNEG00000040606) #11	ENSMNEG00000010649 #12	PPP2R2A (ENSMNEG00000023471) #13	ENSMNEG00000039270 #14	BNIP3L (ENSMNEG00000032945) #15	PNMA2 (ENSMNEG00000021767) #16	ENSMNEG00000040560 #17	DPYSL2 (ENSMNEG00000031797) #18	ADRA1A (ENSMNEG00000032467) #19	STMN4 (ENSMNEG00000042099) #20	TRIM35 (ENSMNEG00000033062) #21	PTK2B (ENSMNEG00000032809) #22	CHRNA2 (ENSMNEG00000036009) #23	EPHX2 (ENSMNEG00000031898) #24	CLU (ENSMNEG00000043022) #25	SCARA3 (ENSMNEG00000037952) #26	ENSMNEG00000036331 #27	ESCO2 (ENSMNEG00000038253) #28	ENSMNEG00000007575 #29	PBK (ENSMNEG00000043731) #30	SCARA5 (ENSMNEG00000043810) #31	NUGGC (ENSMNEG00000045452) #32	ELP3 (ENSMNEG00000024316) #33	ENSMNEG00000021099 #34	PNOC (ENSMNEG00000032474) #35	ZNF395 (ENSMNEG00000011767) #36	FBXO16 (ENSMNEG00000045209) #37
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Rhesus	MODERN SPECIES	18	NEFM (ENSMMUG00000000639)	NEFL (ENSMMUG00000003348)	DOCK5 (ENSMMUG00000008028)	GNRH1 (ENSMMUG00000029018) #7	KCTD9 (ENSMMUG00000010151) #8	CDCA2 (ENSMMUG00000010582) #9	EBF2 (ENSMMUG00000005760) #11	PPP2R2A (ENSMMUG00000041905) #13	BNIP3L (ENSMMUG00000023646) #15	PNMA2 (ENSMMUG00000042420) #16	DPYSL2 (ENSMMUG00000012718) #18	ENSMMUG00000055650	ADRA1A (ENSMMUG00000023112) #19	STMN4 (ENSMMUG00000018670) #20	TRIM35 (ENSMMUG00000010092) #21	PTK2B (ENSMMUG00000019159) #22	CHRNA2 (ENSMMUG00000021514) #23	EPHX2 (ENSMMUG00000021515) #24	CLU (ENSMMUG00000021516) #25	SCARA3 (ENSMMUG00000021517) #26	ENSMMUG00000056404	CCDC25 (ENSMMUG00000016016) #27	ESCO2 (ENSMMUG00000016018) #28	PBK (ENSMMUG00000016019) #30	SCARA5 (ENSMMUG00000022044) #31	NUGGC (ENSMMUG00000001040) #32	ELP3 (ENSMMUG00000005067) #33	ENSMMUG00000064490	PNOC (ENSMMUG00000007479) #35	ZNF395 (ENSMMUG00000060762) #36	FBXO16 (ENSMMUG00000007480) #37
Crab-eating macaque	MODERN SPECIES	18	ENSMFAG00000044080	NEFL (ENSMFAG00000031550)	DOCK5 (ENSMFAG00000001732)	GNRH1 (ENSMFAG00000052417) #7	KCTD9 (ENSMFAG00000000476) ##8	CDCA2 (ENSMFAG00000044937) #9	EBF2 (ENSMFAG00000036796) #11	PPP2R2A (ENSMFAG00000045160) #13	BNIP3L (ENSMFAG00000003324) #15	PNMA2 (ENSMFAG00000000029) #16	DPYSL2 (ENSMFAG00000005287) #18	ADRA1A (ENSMFAG00000030813) #19	STMN4 (ENSMFAG00000032113) #20	ENSMFAG00000054931	TRIM35 (ENSMFAG00000035683) #21	PTK2B (ENSMFAG00000003719) #22	CHRNA2 (ENSMFAG00000003637) #23	EPHX2 (ENSMFAG00000036427) #24	CLU (ENSMFAG00000041649) #25	SCARA3 (ENSMFAG00000026741) #26	ENSMFAG00000035835 #27	ESCO2 (ENSMFAG00000044655) #28	PBK (ENSMFAG00000001680) #30	SCARA5 (ENSMFAG00000019218) #31	NUGGC (ENSMFAG00000043857) #32	ELP3 (ENSMFAG00000000785) #33	PNOC (ENSMFAG00000044801) #35	ZNF395 (ENSMFAG00000036920) #36	ENSMFAG00000049652	FBXO16 (ENSMFAG00000043613) #37	FZD3 (ENSMFAG00000044555)
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00940000156208	ENSGT00910000147586	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.r #14	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b.c #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Cercopithecinae_d	ANCESTRAL SPECIES	50	ENSGT00910000147586	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000012635.a.b	ENSGT00390000010355.r #14	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b.c #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Sooty mangabey	MODERN SPECIES	555	ENSCATG00000030152	DOCK5 (ENSCATG00000043562)	GNRH1 (ENSCATG00000041582) #7	KCTD9 (ENSCATG00000038906) #8	CDCA2 (ENSCATG00000031991) #9	EBF2 (ENSCATG00000039203) #11	PPP2R2A (ENSCATG00000037089) #13	ENSCATG00000045206	ENSCATG00000045185 #14	BNIP3L (ENSCATG00000036601) #15	PNMA2 (ENSCATG00000017448) #16	DPYSL2 (ENSCATG00000034654) #18	ADRA1A (ENSCATG00000045125) #19	STMN4 (ENSCATG00000022939) #20	TRIM35 (ENSCATG00000032262) #21	PTK2B (ENSCATG00000032885) #22	CHRNA2 (ENSCATG00000031746) #23	EPHX2 (ENSCATG00000029846) #24	CLU (ENSCATG00000009271) #25	SCARA3 (ENSCATG00000037167) #26	ENSCATG00000033671 #27	ESCO2 (ENSCATG00000032436) #28	PBK (ENSCATG00000023001) #30	SCARA5 (ENSCATG00000032773) #31	NUGGC (ENSCATG00000011556) #32	ELP3 (ENSCATG00000034665) #33	ENSCATG00000035437 #34	PNOC (ENSCATG00000034393) #35	ZNF395 (ENSCATG00000032647) #36	FBXO16 (ENSCATG00000040856) #37	FZD3 (ENSCATG00000044589)
Drill	MODERN SPECIES	879						EBF2 (ENSMLEG00000035290) #11	PPP2R2A (ENSMLEG00000040846) #13	ENSMLEG00000037332	ENSMLEG00000037027 ##14	BNIP3L (ENSMLEG00000041439) #15	PNMA2 (ENSMLEG00000010554) #16	DPYSL2 (ENSMLEG00000042022) #18	ADRA1A (ENSMLEG00000043053) #19	STMN4 (ENSMLEG00000037742) #20	TRIM35 (ENSMLEG00000030731) #21	PTK2B (ENSMLEG00000030832) #22	CHRNA2 (ENSMLEG00000029000) #23	EPHX2 (ENSMLEG00000029411) #24	CLU (ENSMLEG00000035141) #25	SCARA3 (ENSMLEG00000035030) #26	ENSMLEG00000029491 #27	ESCO2 (ENSMLEG00000033287) #28	PBK (ENSMLEG00000031460) #30	SCARA5 (ENSMLEG00000041455) #31	NUGGC (ENSMLEG00000042548) #32	ELP3 (ENSMLEG00000040984) #33	ENSMLEG00000015003 #34	PNOC (ENSMLEG00000031812) #35	ZNF395 (ENSMLEG00000005455) #36	FBXO16 (ENSMLEG00000007596) #37	FZD3 (ENSMLEG00000040352)
Olive baboon	MODERN SPECIES	18	ADAM7 (ENSPANG00000017131)	ENSPANG00000030915	ENSPANG00000038971	NEFM (ENSPANG00000018460)	NEFL (ENSPANG00000011988)	DOCK5 (ENSPANG00000005750)	KCTD9 (ENSPANG00000019100) #8	CDCA2 (ENSPANG00000008115) #9	EBF2 (ENSPANG00000020231) #11	ENSPANG00000048024	PNMA2 (ENSPANG00000007854) #16	DPYSL2 (ENSPANG00000024528) #18	ADRA1A (ENSPANG00000024527) #19	STMN4 (ENSPANG00000007322) #20	TRIM35 (ENSPANG00000017759) #21	PTK2B (ENSPANG00000019189) #22	CHRNA2 (ENSPANG00000015733) #23	EPHX2 (ENSPANG00000001096) #24	CLU (ENSPANG00000024524) #25	SCARA3 (ENSPANG00000016907) #26	ENSPANG00000012552 #27	ESCO2 (ENSPANG00000008112) #28	PBK (ENSPANG00000024523) #30	SCARA5 (ENSPANG00000021266) #31	NUGGC (ENSPANG00000010200) #32	ELP3 (ENSPANG00000019350) #33	PNOC (ENSPANG00000022004) #35	ZNF395 (ENSPANG00000017244) #36	FBXO16 (ENSPANG00000019570) #37	FZD3 (ENSPANG00000010199)	EXTL3 (ENSPANG00000016340)
Vervet Monkey	MODERN SPECIES	27	NEFM (ENSCSAG00000016135)	NEFL (ENSCSAG00000016132)	DOCK5 (ENSCSAG00000016128)	GNRH1 (ENSCSAG00000016109) #7	ENSCSAG00000016100 ##8	CDCA2 (ENSCSAG00000016076) #9	ENSCSAG00000016068 #11	ENSCSAG00000016062 #11	PPP2R2A (ENSCSAG00000016060) #13	BNIP3L (ENSCSAG00000016055) #15	PNMA2 (ENSCSAG00000018524) #16	DPYSL2 (ENSCSAG00000016049) #18	ADRA1A (ENSCSAG00000016022) #19	STMN4 (ENSCSAG00000016018) #20	TRIM35 (ENSCSAG00000016014) #21	PTK2B (ENSCSAG00000016005) #22	CHRNA2 (ENSCSAG00000015995) #23	EPHX2 (ENSCSAG00000015986) #24	CLU (ENSCSAG00000015978) #25	SCARA3 (ENSCSAG00000015975) #26	CCDC25 (ENSCSAG00000015972) ##27	ESCO2 (ENSCSAG00000015966) #28	PBK (ENSCSAG00000015961) #30	SCARA5 (ENSCSAG00000015956) #31	ENSCSAG00000015949	ELP3 (ENSCSAG00000015927) #33	PNOC (ENSCSAG00000015924) #35	ZNF395 (ENSCSAG00000015919) #36	FBXO16 (ENSCSAG00000015916) #37	FZD3 (ENSCSAG00000015910)	EXTL3 (ENSCSAG00000015903)
Rhinopithecus	ANCESTRAL SPECIES	55	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154314.k.b.b.a ##8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.r #14	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a.b #27	ENSGT00940000158598 #28	ENSGT00720000108839.a #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Black snub-nosed monkey	MODERN SPECIES	98	DOCK5 (ENSRBIG00000022198)	GNRH1 (ENSRBIG00000042433) #7	ENSRBIG00000044540 ##8	CDCA2 (ENSRBIG00000039250) #9	ENSRBIG00000026024	EBF2 (ENSRBIG00000011662) #11	PPP2R2A (ENSRBIG00000028497) #13	ENSRBIG00000031494 #14	BNIP3L (ENSRBIG00000043157) #15	ENSRBIG00000006170	PNMA2 (ENSRBIG00000016543) #16	DPYSL2 (ENSRBIG00000038509) #18	ADRA1A (ENSRBIG00000043723) #19	STMN4 (ENSRBIG00000039520) #20	TRIM35 (ENSRBIG00000038938) #21	PTK2B (ENSRBIG00000030703) #22	CHRNA2 (ENSRBIG00000030777) #23	EPHX2 (ENSRBIG00000044411) #24	CLU (ENSRBIG00000030449) #25	SCARA3 (ENSRBIG00000043052) #26	ENSRBIG00000043704 #27	ESCO2 (ENSRBIG00000012033) #28	ENSRBIG00000039243 #30	ENSRBIG00000030020	SCARA5 (ENSRBIG00000035322) #31	NUGGC (ENSRBIG00000043902) #32	ELP3 (ENSRBIG00000029829) #33	PNOC (ENSRBIG00000034240) #35	ZNF395 (ENSRBIG00000012476) #36	FBXO16 (ENSRBIG00000037905) #37	FZD3 (ENSRBIG00000040353)
Golden snub-nosed monkey	MODERN SPECIES	2058	NEFL (ENSRROG00000037096)	DOCK5 (ENSRROG00000028212)	GNRH1 (ENSRROG00000043250) #7	KCTD9 (ENSRROG00000032392) #8	CDCA2 (ENSRROG00000035636) #9	EBF2 (ENSRROG00000034779) #11	PPP2R2A (ENSRROG00000041692) #13	ENSRROG00000038154 #14	BNIP3L (ENSRROG00000031724) #15	ENSRROG00000036299	PNMA2 (ENSRROG00000020262) #16	DPYSL2 (ENSRROG00000040914) #18	ADRA1A (ENSRROG00000041301) #19	STMN4 (ENSRROG00000042832) #20	TRIM35 (ENSRROG00000030715) #21	PTK2B (ENSRROG00000042745) #22	CHRNA2 (ENSRROG00000032763) #23	EPHX2 (ENSRROG00000027951) #24	CLU (ENSRROG00000040828) #25	SCARA3 (ENSRROG00000041739) #26	ENSRROG00000028567 #27	ESCO2 (ENSRROG00000041011) #28	ENSRROG00000042364 #30	ENSRROG00000030831
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.b.a ##27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Hominidae	ANCESTRAL SPECIES	15	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.b.a ##27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.k.b.a #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.q.b ##14	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.b.a ##27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.l ##8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.q.b ##14	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.b.a ##27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Pan	ANCESTRAL SPECIES	30	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.l ##8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000010355.q.b ##14	ENSGT00390000013415.a.b #15	ENSGT00960000186788	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.b.a ##27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183210.d.a.c.b.b.a.b.b #34	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Bonobo	MODERN SPECIES	21	NEFL (ENSPPAG00000039333)	DOCK5 (ENSPPAG00000040985)	GNRH1 (ENSPPAG00000028067) #7	ENSPPAG00000030819 ##8	CDCA2 (ENSPPAG00000033215) #9	EBF2 (ENSPPAG00000030675) #11	PPP2R2A (ENSPPAG00000035123) #13	ENSPPAG00000033286 ##14	BNIP3L (ENSPPAG00000036943) #15	ENSPPAG00000040176	PNMA2 (ENSPPAG00000033170) #16	DPYSL2 (ENSPPAG00000035831) #18	ADRA1A (ENSPPAG00000043804) #19	ENSPPAG00000043385 #20	TRIM35 (ENSPPAG00000038841) #21	PTK2B (ENSPPAG00000037974) #22	CHRNA2 (ENSPPAG00000042024) #23	EPHX2 (ENSPPAG00000034443) #24	CLU (ENSPPAG00000030389) #25	SCARA3 (ENSPPAG00000031092) #26	CCDC25 (ENSPPAG00000035057) ##27	ESCO2 (ENSPPAG00000037825) #28	PBK (ENSPPAG00000036956) #30	SCARA5 (ENSPPAG00000032372) #31	NUGGC (ENSPPAG00000033912) #32	ELP3 (ENSPPAG00000003473) #33	ENSPPAG00000042684 #34	PNOC (ENSPPAG00000031795) #35	ZNF395 (ENSPPAG00000029300) #36	FBXO16 (ENSPPAG00000030694) #37	FZD3 (ENSPPAG00000032462)
Chimpanzee	MODERN SPECIES	21	DOCK5 (ENSPTRG00000020090)	GNRH1 (ENSPTRG00000020091) #7	KCTD9 (ENSPTRG00000020092) ##8	CDCA2 (ENSPTRG00000020094) #9	EBF2 (ENSPTRG00000003058) #11	PPP2R2A (ENSPTRG00000042450) #13	ENSPTRG00000047485 ##14	BNIP3L (ENSPTRG00000020097) #15	ENSPTRG00000051226	PNMA2 (ENSPTRG00000051035) #16	DPYSL2 (ENSPTRG00000020099) #18	ADRA1A (ENSPTRG00000020100) #19	ENSPTRG00000045362	STMN4 (ENSPTRG00000020102) #20	TRIM35 (ENSPTRG00000020103) #21	PTK2B (ENSPTRG00000020104) #22	CHRNA2 (ENSPTRG00000020105) #23	EPHX2 (ENSPTRG00000020106) #24	CLU (ENSPTRG00000020107) #25	SCARA3 (ENSPTRG00000020108) #26	CCDC25 (ENSPTRG00000020109) ##27	ESCO2 (ENSPTRG00000020110) #28	PBK (ENSPTRG00000020112) #30	SCARA5 (ENSPTRG00000020113) #31	NUGGC (ENSPTRG00000020114) #32	ELP3 (ENSPTRG00000020115) #33	ENSPTRG00000043531 #34	PNOC (ENSPTRG00000020116) #35	ZNF395 (ENSPTRG00000020119) #36	FBXO16 (ENSPTRG00000034416) #37	FZD3 (ENSPTRG00000020122)
Human	MODERN SPECIES	20	ADAM7 (ENSG00000069206)	NEFM (ENSG00000104722)	NEFL (ENSG00000277586)	DOCK5 (ENSG00000147459)	GNRH1 (ENSG00000147437) #7	KCTD9 (ENSG00000104756) #8	CDCA2 (ENSG00000184661) #9	EBF2 (ENSG00000221818) #11	PPP2R2A (ENSG00000221914) #13	BNIP3L (ENSG00000104765) #15	PNMA2 (ENSG00000240694) #16	DPYSL2 (ENSG00000092964) #18	ADRA1A (ENSG00000120907) #19	STMN4 (ENSG00000015592) #20	TRIM35 (ENSG00000104228) #21	PTK2B (ENSG00000120899) #22	CHRNA2 (ENSG00000120903) #23	EPHX2 (ENSG00000120915) #24	CLU (ENSG00000120885) #25	SCARA3 (ENSG00000168077) #26	CCDC25 (ENSG00000147419) ##27	ESCO2 (ENSG00000171320) #28	PBK (ENSG00000168078) #30	SCARA5 (ENSG00000168079) #31	NUGGC (ENSG00000189233) #32	ELP3 (ENSG00000134014) #33	PNOC (ENSG00000168081) #35	ZNF395 (ENSG00000186918) #36	FBXO16 (ENSG00000214050) #37	FZD3 (ENSG00000104290)	EXTL3 (ENSG00000012232)
Gorilla	MODERN SPECIES	21	NEFL (ENSGGOG00000001429)	DOCK5 (ENSGGOG00000004460)	GNRH1 (ENSGGOG00000004479) #7	KCTD9 (ENSGGOG00000004480) #8	CDCA2 (ENSGGOG00000022784) #9	EBF2 (ENSGGOG00000001585) #11	PPP2R2A (ENSGGOG00000011500) #13	ENSGGOG00000027436 ##14	BNIP3L (ENSGGOG00000041240) #15	ENSGGOG00000038243	PNMA2 (ENSGGOG00000043329) #16	DPYSL2 (ENSGGOG00000000194) #18	ADRA1A (ENSGGOG00000000511) #19	ENSGGOG00000003341 #20	ENSGGOG00000010652 #21	PTK2B (ENSGGOG00000015589) #22	CHRNA2 (ENSGGOG00000015596) #23	EPHX2 (ENSGGOG00000016993) #24	CLU (ENSGGOG00000016926) #25	ENSGGOG00000004099 #26	CCDC25 (ENSGGOG00000009685) ##27	ESCO2 (ENSGGOG00000009689) #28	PBK (ENSGGOG00000006648) #30	SCARA5 (ENSGGOG00000001855) #31	NUGGC (ENSGGOG00000011097) #32	ELP3 (ENSGGOG00000004808) #33	PNOC (ENSGGOG00000015723) #35	ZNF395 (ENSGGOG00000015725) #36	FBXO16 (ENSGGOG00000016343) #37	FZD3 (ENSGGOG00000024822)	EXTL3 (ENSGGOG00000008655)
Orangutan	MODERN SPECIES	21	NEFL (ENSPPYG00000018449)	ENSPPYG00000033175 ##10	DOCK5 (ENSPPYG00000031126)	GNRH1 (ENSPPYG00000018451) #7	KCTD9 (ENSPPYG00000018452) #8	CDCA2 (ENSPPYG00000018453) #9	EBF2 (ENSPPYG00000018454) #11	PPP2R2A (ENSPPYG00000018455) #13	BNIP3L (ENSPPYG00000038394) #15	ENSPPYG00000033464	PNMA2 (ENSPPYG00000018457) #16	DPYSL2 (ENSPPYG00000018458) #18	ADRA1A (ENSPPYG00000018459) #19	STMN4 (ENSPPYG00000018460) #20	TRIM35 (ENSPPYG00000018461) #21	PTK2B (ENSPPYG00000018462) #22	CHRNA2 (ENSPPYG00000018464) #23	EPHX2 (ENSPPYG00000018465) #24	CLU (ENSPPYG00000018466) #25	SCARA3 (ENSPPYG00000018467) #26	CCDC25 (ENSPPYG00000018468)	ESCO2 (ENSPPYG00000018469) #28	PBK (ENSPPYG00000018470) #30	SCARA5 (ENSPPYG00000018471) #31	NUGGC (ENSPPYG00000018472) #32	ELP3 (ENSPPYG00000018473) #33	PNOC (ENSPPYG00000018475) #35	ZNF395 (ENSPPYG00000018476) #36	FBXO16 (ENSPPYG00000029855) #37	FZD3 (ENSPPYG00000018477)	EXTL3 (ENSPPYG00000018478)
Gibbon	MODERN SPECIES	23	ADAM7 (ENSNLEG00000016022)	ENSNLEG00000016060	NEFL (ENSNLEG00000016066)	DOCK5 (ENSNLEG00000016075)	GNRH1 (ENSNLEG00000032497) #7	KCTD9 (ENSNLEG00000016156) #8	CDCA2 (ENSNLEG00000016169) #9	EBF2 (ENSNLEG00000016189) #11	PPP2R2A (ENSNLEG00000028888) #13	BNIP3L (ENSNLEG00000016221) #15	PNMA2 (ENSNLEG00000019079) #16	DPYSL2 (ENSNLEG00000016244) #18	ADRA1A (ENSNLEG00000016272) #19	STMN4 (ENSNLEG00000031885) #20	TRIM35 (ENSNLEG00000016281) #21	PTK2B (ENSNLEG00000016291) #22	CHRNA2 (ENSNLEG00000016309) #23	EPHX2 (ENSNLEG00000016316) #24	CLU (ENSNLEG00000016366) #25	SCARA3 (ENSNLEG00000016505) #26	ENSNLEG00000016507 #27	ESCO2 (ENSNLEG00000016527) #28	PBK (ENSNLEG00000016542) #30	SCARA5 (ENSNLEG00000016553) #31	NUGGC (ENSNLEG00000016569) #32	ELP3 (ENSNLEG00000016577) #33	ENSNLEG00000016608 #35	ZNF395 (ENSNLEG00000016613) #36	ENSNLEG00000016633 #37	FZD3 (ENSNLEG00000016642)	EXTL3 (ENSNLEG00000016652)
Platyrrhini	ANCESTRAL SPECIES	29	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.l ##8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Cebidae	ANCESTRAL SPECIES	30	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.l ##8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Cebidae_a	ANCESTRAL SPECIES	44	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.l ##8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.m.a #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Bolivian squirrel monkey	MODERN SPECIES	132	ADAMDEC1 (ENSSBOG00000023422)	ADAM7 (ENSSBOG00000033466)	ENSSBOG00000026028	ENSSBOG00000031985	DOCK5 (ENSSBOG00000018389)	GNRH1 (ENSSBOG00000030355) #7	KCTD9 (ENSSBOG00000020467) ##8	CDCA2 (ENSSBOG00000025034) #9	EBF2 (ENSSBOG00000029332) #11	PPP2R2A (ENSSBOG00000022095) #13	BNIP3L (ENSSBOG00000001484) #15	DPYSL2 (ENSSBOG00000022904) #18	ADRA1A (ENSSBOG00000019482) #19	STMN4 (ENSSBOG00000027671) #20	TRIM35 (ENSSBOG00000023023) #21	PTK2B (ENSSBOG00000020869) #22	CHRNA2 (ENSSBOG00000032890) #23	EPHX2 (ENSSBOG00000034083) #24	CLU (ENSSBOG00000030641) #25	SCARA3 (ENSSBOG00000021459) #26	ENSSBOG00000032304 #27	ESCO2 (ENSSBOG00000023036) #28	SCARA5 (ENSSBOG00000028648) #31	NUGGC (ENSSBOG00000028930) #32	ELP3 (ENSSBOG00000025739) #33	PNOC (ENSSBOG00000021496) #35	ZNF395 (ENSSBOG00000030199) #36	FBXO16 (ENSSBOG00000031835) #37	ENSSBOG00000012318	FZD3 (ENSSBOG00000030894)	EXTL3 (ENSSBOG00000029919)
Capuchin	MODERN SPECIES	125								ENSCCAG00000029792 #11	PPP2R2A (ENSCCAG00000026114) #13	BNIP3L (ENSCCAG00000037644) #15	DPYSL2 (ENSCCAG00000034157) #18	ADRA1A (ENSCCAG00000017294) #19	ENSCCAG00000021336	STMN4 (ENSCCAG00000024945) #20	TRIM35 (ENSCCAG00000036836) #21	PTK2B (ENSCCAG00000027006) #22	CHRNA2 (ENSCCAG00000025139) #23	EPHX2 (ENSCCAG00000028330) #24	CLU (ENSCCAG00000019707) #25	SCARA3 (ENSCCAG00000036648) #26	CCDC25 (ENSCCAG00000037254) ##27	ESCO2 (ENSCCAG00000020110) #28	PBK (ENSCCAG00000026612) #30	SCARA5 (ENSCCAG00000020556) #31	NUGGC (ENSCCAG00000024929) #32	ELP3 (ENSCCAG00000026958) #33	PNOC (ENSCCAG00000033157) #35	ZNF395 (ENSCCAG00000010590) #36	ENSCCAG00000035625	FZD3 (ENSCCAG00000030357)	EXTL3 (ENSCCAG00000029340)
Marmoset	MODERN SPECIES	4	ENSCJAG00000010608	NEFL (ENSCJAG00000020035)	DOCK5 (ENSCJAG00000019986)	KCTD9 (ENSCJAG00000019969) ##8	CDCA2 (ENSCJAG00000019958) #9	ENSCJAG00000084648	EBF2 (ENSCJAG00000019921) #11	ENSCJAG00000077305	PPP2R2A (ENSCJAG00000019902) #13	BNIP3L (ENSCJAG00000075722) #15	DPYSL2 (ENSCJAG00000042451) #18	ENSCJAG00000084865	ADRA1A (ENSCJAG00000080222) #19	STMN4 (ENSCJAG00000019866) #20	TRIM35 (ENSCJAG00000019863) #21	PTK2B (ENSCJAG00000019574) #22	CHRNA2 (ENSCJAG00000019690) #23	EPHX2 (ENSCJAG00000019677) #24	CLU (ENSCJAG00000019662) #25	SCARA3 (ENSCJAG00000019539) #26	ENSCJAG00000052322 #27	ESCO2 (ENSCJAG00000015416) #28	PBK (ENSCJAG00000015448) #30	SCARA5 (ENSCJAG00000015467) #31	NUGGC (ENSCJAG00000015456) #32	ELP3 (ENSCJAG00000015478) #33	PNOC (ENSCJAG00000015535) #35	ZNF395 (ENSCJAG00000015540) #36	FBXO16 (ENSCJAG00000015578) #37	FZD3 (ENSCJAG00000015561)	ENSCJAG00000085398
Mas night monkey	MODERN SPECIES	974	NEFL (ENSANAG00000022798)	DOCK5 (ENSANAG00000032901)	GNRH1 (ENSANAG00000034874) #7	ENSANAG00000025804 ##8	CDCA2 (ENSANAG00000037820) #9	EBF2 (ENSANAG00000022835) #11	PPP2R2A (ENSANAG00000033237) #13	BNIP3L (ENSANAG00000025801) #15	ENSANAG00000031085	DPYSL2 (ENSANAG00000034307) #18	ENSANAG00000034640	ADRA1A (ENSANAG00000022712) #19	ENSANAG00000032951	STMN4 (ENSANAG00000021238) #20	TRIM35 (ENSANAG00000034109) #21	PTK2B (ENSANAG00000034147) #22	CHRNA2 (ENSANAG00000023714) #23	EPHX2 (ENSANAG00000006028) #24	CLU (ENSANAG00000032018) #25	SCARA3 (ENSANAG00000032323) #26	ENSANAG00000027853 #27	ESCO2 (ENSANAG00000021740) #28	PBK (ENSANAG00000031844) #30	SCARA5 (ENSANAG00000022183) #31	NUGGC (ENSANAG00000022394) #32	ENSANAG00000026004	ELP3 (ENSANAG00000037178) #33	PNOC (ENSANAG00000005124) #35	ZNF395 (ENSANAG00000035574) #36	FBXO16 (ENSANAG00000010190) #37	ENSANAG00000035511
Tarsier	MODERN SPECIES	807																PTK2B (ENSTSYG00000004736) #22	CHRNA2 (ENSTSYG00000035567) #23
Strepsirrhini	ANCESTRAL SPECIES	25	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Lemuriformes	ANCESTRAL SPECIES	32	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b.f #11	ENSGT00950000182859.A.a.a.b.e #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Lemuriformes_a	ANCESTRAL SPECIES	34	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b.f #11	ENSGT00950000182859.A.a.a.b.e #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Greater bamboo lemur	MODERN SPECIES	236				ENSPSMG00000009203	GNRH1 (ENSPSMG00000009210) #7	KCTD9 (ENSPSMG00000009241) #8	CDCA2 (ENSPSMG00000009257) #9	EBF2 (ENSPSMG00000009327) #11	PPP2R2A (ENSPSMG00000009553) #13	BNIP3L (ENSPSMG00000009825) #15	PNMA2 (ENSPSMG00000009835) #16	DPYSL2 (ENSPSMG00000009959) #18	ADRA1A (ENSPSMG00000010078) #19	STMN4 (ENSPSMG00000010113) #20	TRIM35 (ENSPSMG00000010142) #21	PTK2B (ENSPSMG00000010424) #22	CHRNA2 (ENSPSMG00000010720) #23	EPHX2 (ENSPSMG00000010900) #24	ENSPSMG00000011018	CLU (ENSPSMG00000011031) #25	SCARA3 (ENSPSMG00000011055) #26	CCDC25 (ENSPSMG00000011072) #27	ESCO2 (ENSPSMG00000011084) #28	PBK (ENSPSMG00000011100) #30	SCARA5 (ENSPSMG00000011126) #31	NUGGC (ENSPSMG00000011148) #32	ELP3 (ENSPSMG00000011191) #33	PNOC (ENSPSMG00000011213) #35	ZNF395 (ENSPSMG00000011230) #36	FBXO16 (ENSPSMG00000011278) #37	FZD3 (ENSPSMG00000011295)
Coquerels sifaka	MODERN SPECIES	919	ENSPCOG00000021910	ADAM7 (ENSPCOG00000026532)	NEFM (ENSPCOG00000022965)	NEFL (ENSPCOG00000026085)	DOCK5 (ENSPCOG00000016268)	GNRH1 (ENSPCOG00000024165) #7	KCTD9 (ENSPCOG00000020414) #8	CDCA2 (ENSPCOG00000023393) #9	EBF2 (ENSPCOG00000027078) #11	PPP2R2A (ENSPCOG00000023269) #13	BNIP3L (ENSPCOG00000026018) #15	DPYSL2 (ENSPCOG00000027797) #18	ADRA1A (ENSPCOG00000028770) #19	STMN4 (ENSPCOG00000028776) #20	TRIM35 (ENSPCOG00000016334) #21	PTK2B (ENSPCOG00000026528) #22	CHRNA2 (ENSPCOG00000019897) #23	EPHX2 (ENSPCOG00000027937) #24	ENSPCOG00000020409	CLU (ENSPCOG00000009703) #25	SCARA3 (ENSPCOG00000017002) #26	CCDC25 (ENSPCOG00000005370) #27	ESCO2 (ENSPCOG00000021572) #28	PBK (ENSPCOG00000018801) #30
Mouse lemur	MODERN SPECIES	12	NEFL (ENSMICG00000030432)	DOCK5 (ENSMICG00000016726)	GNRH1 (ENSMICG00000037976) #7	KCTD9 (ENSMICG00000016754) #8	CDCA2 (ENSMICG00000031889) #9	ENSMICG00000015774 #11	ENSMICG00000043737	ENSMICG00000030813 #11	PPP2R2A (ENSMICG00000034854) #13	BNIP3L (ENSMICG00000015781) #15	DPYSL2 (ENSMICG00000015794) #18	ADRA1A (ENSMICG00000015812) #19	ENSMICG00000026774	STMN4 (ENSMICG00000012281) #20	TRIM35 (ENSMICG00000038500) #21	PTK2B (ENSMICG00000007677) #22	CHRNA2 (ENSMICG00000007702) #23	ENSMICG00000007709 #24	ENSMICG00000028711	CLU (ENSMICG00000007720) #25	SCARA3 (ENSMICG00000035553) #26	CCDC25 (ENSMICG00000042632) #27	ESCO2 (ENSMICG00000029625) #28	PBK (ENSMICG00000001285) #30	SCARA5 (ENSMICG00000038705) #31	NUGGC (ENSMICG00000030884) #32	ELP3 (ENSMICG00000011977) #33	PNOC (ENSMICG00000043478) #35	ZNF395 (ENSMICG00000011993) #36	FBXO16 (ENSMICG00000036274) #37	FZD3 (ENSMICG00000002985)
Bushbaby	MODERN SPECIES	189	ADAM7 (ENSOGAG00000015171)	ENSOGAG00000026104	NEFL (ENSOGAG00000015179)	DOCK5 (ENSOGAG00000002967)	GNRH1 (ENSOGAG00000016753) #7	KCTD9 (ENSOGAG00000002969) #8	CDCA2 (ENSOGAG00000002970) #9	EBF2 (ENSOGAG00000010783) #11	PPP2R2A (ENSOGAG00000034741) #13	BNIP3L (ENSOGAG00000003163) #15	PNMA2 (ENSOGAG00000011246) #16	DPYSL2 (ENSOGAG00000011250) #18	ADRA1A (ENSOGAG00000026801) #19	STMN4 (ENSOGAG00000010549) #20	TRIM35 (ENSOGAG00000027382) #21	PTK2B (ENSOGAG00000003185) #22	CHRNA2 (ENSOGAG00000033591) #23	EPHX2 (ENSOGAG00000003192) #24	ENSOGAG00000026271	CLU (ENSOGAG00000030580) #25	SCARA3 (ENSOGAG00000031170) #26	CCDC25 (ENSOGAG00000011829) #27	ESCO2 (ENSOGAG00000011834) #28	PBK (ENSOGAG00000009887) #30	SCARA5 (ENSOGAG00000031847) #31	NUGGC (ENSOGAG00000000229) #32	ELP3 (ENSOGAG00000000230) #33	ZNF395 (ENSOGAG00000012747) #36	FBXO16 (ENSOGAG00000030753) #37	FZD3 (ENSOGAG00000030202)	EXTL3 (ENSOGAG00000002322)
Euarchontoglires_A	ANCESTRAL SPECIES	25	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Tree shrew	MODERN SPECIES	5523													ENSTBEG00000010581	ENSTBEG00000010932	TRIM35 (ENSTBEG00000010969) #21	PTK2B (ENSTBEG00000011138) #22	EPHX2 (ENSTBEG00000011909) #24
Glires	ANCESTRAL SPECIES	26	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Lagomorpha	ANCESTRAL SPECIES	60	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Rabbit	MODERN SPECIES	11	NEFL (ENSOCUG00000023836)	DOCK5 (ENSOCUG00000014056)	GNRH1 (ENSOCUG00000014093) #7	KCTD9 (ENSOCUG00000014099) #8	CDCA2 (ENSOCUG00000014109) #9	EBF2 (ENSOCUG00000011972) #11	PPP2R2A (ENSOCUG00000027088) #13	BNIP3L (ENSOCUG00000010542) #15	ENSOCUG00000033577	DPYSL2 (ENSOCUG00000016002) #18	ENSOCUG00000033215	ADRA1A (ENSOCUG00000000775) #19	ENSOCUG00000038802	STMN4 (ENSOCUG00000007652) #20	TRIM35 (ENSOCUG00000007658) #21	PTK2B (ENSOCUG00000007668) #22	CHRNA2 (ENSOCUG00000007679) #23	ADAM2 (ENSOCUG00000006251)	ENSOCUG00000024474	CLU (ENSOCUG00000005985) #25	SCARA3 (ENSOCUG00000009918) #26	CCDC25 (ENSOCUG00000009924) #27	ESCO2 (ENSOCUG00000009932) #28	PBK (ENSOCUG00000000031) #30	SCARA5 (ENSOCUG00000026532) #31	NUGGC (ENSOCUG00000000032) #32	ELP3 (ENSOCUG00000000034) #33	PNOC (ENSOCUG00000014172) #35	ZNF395 (ENSOCUG00000014174) #36	FBXO16 (ENSOCUG00000022817) #37	FZD3 (ENSOCUG00000025264)
Pika	MODERN SPECIES	5466															ENSOPRG00000000502 #21	PTK2B (ENSOPRG00000000522) #22	CHRNA2 (ENSOPRG00000000558) #23	ENSOPRG00000000567 #24	CLU (ENSOPRG00000000587) #25	SCARA3 (ENSOPRG00000000591) #26	CCDC25 (ENSOPRG00000000603) #27	ESCO2 (ENSOPRG00000000612) #28	PBK (ENSOPRG00000000622) #30	SCARA5 (ENSOPRG00000000627) #31	ENSOPRG00000000635	ELP3 (ENSOPRG00000000648) #33
Rodentia	ANCESTRAL SPECIES	21	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.p #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.p #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.p #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000015375	ADAM7 (ENSCLAG00000013174)	ENSCLAG00000013799	NEFL (ENSCLAG00000014935)	DOCK5 (ENSCLAG00000015174)	GNRH1 (ENSCLAG00000014234) #7	KCTD9 (ENSCLAG00000013948) #8	CDCA2 (ENSCLAG00000011981) #9	EBF2 (ENSCLAG00000013500) #11	PPP2R2A (ENSCLAG00000013984) #13	BNIP3L (ENSCLAG00000016223) #15	DPYSL2 (ENSCLAG00000015960) #18	ADRA1A (ENSCLAG00000014689) #19	STMN4 (ENSCLAG00000014584) #20	TRIM35 (ENSCLAG00000014327) #21	PTK2B (ENSCLAG00000015285) #22	CHRNA2 (ENSCLAG00000016813) #23	EPHX2 (ENSCLAG00000014569) #24	ADAM2 (ENSCLAG00000014916)	ENSCLAG00000014336	CLU (ENSCLAG00000014457) #25	SCARA3 (ENSCLAG00000016246) #26	CCDC25 (ENSCLAG00000013927) #27	ESCO2 (ENSCLAG00000017015) #28	PBK (ENSCLAG00000014953) #30	SCARA5 (ENSCLAG00000015896) #31	NUGGC (ENSCLAG00000014640) #32	ELP3 (ENSCLAG00000016550) #33	PNOC (ENSCLAG00000013995) #35	ZNF395 (ENSCLAG00000015098) #36	FBXO16 (ENSCLAG00000017107) #37
Degu	MODERN SPECIES	77	DOCK5 (ENSODEG00000007523)	GNRH1 (ENSODEG00000007834) #7	KCTD9 (ENSODEG00000008616) #8	ENSODEG00000007418 #9	ENSODEG00000006905	EBF2 (ENSODEG00000007640) #11	ENSODEG00000007854	ENSODEG00000006781 #13	ENSODEG00000007362 #15	ENSODEG00000007526	DPYSL2 (ENSODEG00000007667) #18	ADRA1A (ENSODEG00000007554) #19	ENSODEG00000010902	STMN4 (ENSODEG00000006658) #20	TRIM35 (ENSODEG00000008434) #21	PTK2B (ENSODEG00000009950) #22	CHRNA2 (ENSODEG00000008004) #23	EPHX2 (ENSODEG00000007405) #24	ADAM2 (ENSODEG00000008302)	ENSODEG00000012794	CLU (ENSODEG00000007758) #25	SCARA3 (ENSODEG00000007451) #26	CCDC25 (ENSODEG00000007236) #27	ESCO2 (ENSODEG00000010631) #28	PBK (ENSODEG00000009607) #30	SCARA5 (ENSODEG00000007378) #31	NUGGC (ENSODEG00000007232) #32	ELP3 (ENSODEG00000008983) #33	PNOC (ENSODEG00000007324) #35	ZNF395 (ENSODEG00000007787) #36	FBXO16 (ENSODEG00000008057) #37
Guinea pig	MODERN SPECIES	1	ADAMDEC1 (ENSCPOG00000038140)	ADAM7 (ENSCPOG00000001538)	ENSCPOG00000027410	NEFL (ENSCPOG00000023838)	DOCK5 (ENSCPOG00000015533)	GNRH1 (ENSCPOG00000015538) #7	KCTD9 (ENSCPOG00000015540) #8	CDCA2 (ENSCPOG00000036890) #9	EBF2 (ENSCPOG00000001463) #11	PPP2R2A (ENSCPOG00000026784) #13	BNIP3L (ENSCPOG00000034680) #15	DPYSL2 (ENSCPOG00000025679) #18	ADRA1A (ENSCPOG00000038399) #19	STMN4 (ENSCPOG00000005528) #20	TRIM35 (ENSCPOG00000032287) #21	PTK2B (ENSCPOG00000004602) #22	CHRNA2 (ENSCPOG00000038123) #23	EPHX2 (ENSCPOG00000037609) #24	ADAM2 (ENSCPOG00000022133)	CLU (ENSCPOG00000019546) #25	SCARA3 (ENSCPOG00000034540) #26	CCDC25 (ENSCPOG00000038303) #27	ESCO2 (ENSCPOG00000024189) #28	PBK (ENSCPOG00000010826) #30	SCARA5 (ENSCPOG00000023428) #31	NUGGC (ENSCPOG00000003741) #32	ELP3 (ENSCPOG00000003742) #33	PNOC (ENSCPOG00000006646) #35	ZNF395 (ENSCPOG00000003689) #36	ENSCPOG00000014840	ENSCPOG00000000422
Naked mole-rat female	MODERN SPECIES	25	CDCA2 (ENSHGLG00000037894) #9	ENSHGLG00000010256	ENSHGLG00000004897 #11	ENSHGLG00000045544	ENSHGLG00000009150 #13	BNIP3L (ENSHGLG00000041171) #15	ENSHGLG00000044794	PNMA2 (ENSHGLG00000045190) #16	DPYSL2 (ENSHGLG00000005797) #18	ENSHGLG00000046165	ENSHGLG00000048177	ADRA1A (ENSHGLG00000009186) #19	ENSHGLG00000045878	STMN4 (ENSHGLG00000016773) #20	TRIM35 (ENSHGLG00000034100) #21	PTK2B (ENSHGLG00000015272) #22	CHRNA2 (ENSHGLG00000004833) #23	EPHX2 (ENSHGLG00000005581) #24	ADAM2 (ENSHGLG00000007670)	ENSHGLG00000045036	ENSHGLG00000004501	Clu (ENSHGLG00000033946) #25	SCARA3 (ENSHGLG00000006976) #26	CCDC25 (ENSHGLG00000007627) #27	ESCO2 (ENSHGLG00000008587) #28	PBK (ENSHGLG00000018426) #30	SCARA5 (ENSHGLG00000013223) #31	NUGGC (ENSHGLG00000015007) #32	ELP3 (ENSHGLG00000004990) #33	PNOC (ENSHGLG00000043429) #35	ZNF395 (ENSHGLG00000017520) #36
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.j #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005003428	DOCK5 (ENSSVLG00005003397)	GNRH1 (ENSSVLG00005003367) #7	KCTD9 (ENSSVLG00005003331) #8	CDCA2 (ENSSVLG00005003275) #9	EBF2 (ENSSVLG00005003172) #11	ENSSVLG00005003080 #13	ENSSVLG00005003040 #15	PNMA2 (ENSSVLG00005003028) #16	DPYSL2 (ENSSVLG00005002961) #18	ADRA1A (ENSSVLG00005002931) #19	ZFP57 (ENSSVLG00005002906)	STMN4 (ENSSVLG00005002831) #20	TRIM35 (ENSSVLG00005002788) #21	ENSSVLG00005002776	PTK2B (ENSSVLG00005002627) #22	CHRNA2 (ENSSVLG00005002577) #23	EPHX2 (ENSSVLG00005002467) #24	ADAM2 (ENSSVLG00005002341)	ENSSVLG00005002289	CLU (ENSSVLG00005002257) #25	SCARA3 (ENSSVLG00005002219) #26	CCDC25 (ENSSVLG00005002167) #27	ESCO2 (ENSSVLG00005002121) #28	ENSSVLG00005002097	PBK (ENSSVLG00005002075) #30	SCARA5 (ENSSVLG00005002024) #31	NUGGC (ENSSVLG00005001962) #32	ELP3 (ENSSVLG00005001840) #33	PNOC (ENSSVLG00005001784) #35	ZNF395 (ENSSVLG00005001763) #36
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314.j #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839.c #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Alpin marmot	MODERN SPECIES	61	DOCK5 (ENSMMMG00000013783)	GNRH1 (ENSMMMG00000013776) #7	ENSMMMG00000013769	KCTD9 (ENSMMMG00000013722) #8	CDCA2 (ENSMMMG00000013660) #9	ENSMMMG00000013653	EBF2 (ENSMMMG00000013647) #11	ENSMMMG00000013633	PPP2R2A (ENSMMMG00000013593) #13	BNIP3L (ENSMMMG00000013590) #15	PNMA2 (ENSMMMG00000013583) #16	DPYSL2 (ENSMMMG00000013573) #18	ADRA1A (ENSMMMG00000013560) #19	STMN4 (ENSMMMG00000013482) #20	ENSMMMG00000013471 #21	PTK2B (ENSMMMG00000013250) #22	ENSMMMG00000013222 #23	EPHX2 (ENSMMMG00000013154) #24	ADAM2 (ENSMMMG00000013126)	ENSMMMG00000013102	CLU (ENSMMMG00000013091) #25	SCARA3 (ENSMMMG00000013090) #26	CCDC25 (ENSMMMG00000013061) #27	ESCO2 (ENSMMMG00000013045) #28	ENSMMMG00000013030 #30	SCARA5 (ENSMMMG00000013022) #31	NUGGC (ENSMMMG00000012992) #32	ELP3 (ENSMMMG00000012964) #33	PNOC (ENSMMMG00000012949) #35	ZNF395 (ENSMMMG00000012939) #36	FBXO16 (ENSMMMG00000012903) #37
Marmotini_b	ANCESTRAL SPECIES	138														ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839.c #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Squirrel	MODERN SPECIES	275														STMN4 (ENSSTOG00000007200) #20	TRIM35 (ENSSTOG00000020486) #21	PTK2B (ENSSTOG00000009205) #22	CHRNA2 (ENSSTOG00000016060) #23	EPHX2 (ENSSTOG00000010872) #24	ENSSTOG00000004408	ADAM2 (ENSSTOG00000011994)	ENSSTOG00000026329	CLU (ENSSTOG00000026703) #25	SCARA3 (ENSSTOG00000023922) #26	CCDC25 (ENSSTOG00000000490) #27	ESCO2 (ENSSTOG00000000493) #28	PBK (ENSSTOG00000028798) #30	SCARA5 (ENSSTOG00000000496) #31	NUGGC (ENSSTOG00000000498) #32	ELP3 (ENSSTOG00000000508) #33	PNOC (ENSSTOG00000001392) #35	ZNF395 (ENSSTOG00000001396) #36
Arctic ground squirrel	MODERN SPECIES	203														STMN4 (ENSUPAG00010004143) #20	TRIM35 (ENSUPAG00010004126) #21	ENSUPAG00010004106 #22	EPHX2 (ENSUPAG00010003940) #24	ADAM2 (ENSUPAG00010003911)	ENSUPAG00010003895	CLU (ENSUPAG00010003882) #25	SCARA3 (ENSUPAG00010003867) #26	CCDC25 (ENSUPAG00010003839) #27	ESCO2 (ENSUPAG00010003820) #28	PBK (ENSUPAG00010003803) #30	SCARA5 (ENSUPAG00010003795) #31	NUGGC (ENSUPAG00010003759) #32	ELP3 (ENSUPAG00010003737) #33	PNOC (ENSUPAG00010003731) #35	ZNF395 (ENSUPAG00010003708) #36	ENSUPAG00010003704	FBXO16 (ENSUPAG00010003660) #37
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164057	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Northern American deer mouse	MODERN SPECIES	22	Adam7 (ENSPEMG00000012803)	Nefm (ENSPEMG00000020646)	Nefl (ENSPEMG00000020765)	Dock5 (ENSPEMG00000023361)	Gnrh1 (ENSPEMG00000030807) #7	Kctd9 (ENSPEMG00000020895) #8	Cdca2 (ENSPEMG00000021129) #9	Ebf2 (ENSPEMG00000007776) #11	Ppp2r2a (ENSPEMG00000022593) #13	ENSPEMG00000023103 #15	Pnma2 (ENSPEMG00000025483) #16	Dpysl2 (ENSPEMG00000021785) #18	Adra1a (ENSPEMG00000021686) #19	Stmn4 (ENSPEMG00000021636) #20	Trim35 (ENSPEMG00000030578) #21	Ptk2b (ENSPEMG00000017057) #22	Chrna2 (ENSPEMG00000023959) #23	Ephx2 (ENSPEMG00000023642) #24	Adam2 (ENSPEMG00000021163)	Gulo (ENSPEMG00000021556)	Clu (ENSPEMG00000021652) #25	Scara3 (ENSPEMG00000021066) #26	Ccdc25 (ENSPEMG00000021280) #27	Esco2 (ENSPEMG00000023537) #28	Pbk (ENSPEMG00000008543) #30	Scara5 (ENSPEMG00000017018) #31	ENSPEMG00000009412	Elp3 (ENSPEMG00000022889) #33	Pnoc (ENSPEMG00000022408) #35	Zfp395 (ENSPEMG00000011988) #36	Fbxo16 (ENSPEMG00000015712) #37
Prairie vole	MODERN SPECIES	4	Nefl (ENSMOCG00000012988)	Dock5 (ENSMOCG00000009188)	Gnrh1 (ENSMOCG00000003491) #7	Kctd9 (ENSMOCG00000016913) #8	Cdca2 (ENSMOCG00000002388) #9	Ebf2 (ENSMOCG00000007295) #11	ENSMOCG00000005189	Ppp2r2a (ENSMOCG00000011317) #13	ENSMOCG00000018617 #15	Pnma2 (ENSMOCG00000003712) #16	ENSMOCG00000006051	Dpysl2 (ENSMOCG00000016303) #18	Adra1a (ENSMOCG00000018438) #19	Stmn4 (ENSMOCG00000015586) #20	Trim35 (ENSMOCG00000021886) #21	Ptk2b (ENSMOCG00000004454) #22	Chrna2 (ENSMOCG00000019567) #23	Ephx2 (ENSMOCG00000022783) #24	Adam2 (ENSMOCG00000013262)	Gulo (ENSMOCG00000017457)	Clu (ENSMOCG00000014457) #25	Scara3 (ENSMOCG00000016785) #26	Ccdc25 (ENSMOCG00000020480) #27	Esco2 (ENSMOCG00000022286) #28	Pbk (ENSMOCG00000012313) #30	Scara5 (ENSMOCG00000019575) #31	ENSMOCG00000013105	Elp3 (ENSMOCG00000011382) #33	Pnoc (ENSMOCG00000017730) #35	Zfp395 (ENSMOCG00000019751) #36	Fbxo16 (ENSMOCG00000013548) #37
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Chinese hamster chok1gshd	MODERN SPECIES	3	Nefl (ENSCGRG00001016408)	Dock5 (ENSCGRG00001021195)	Gnrh1 (ENSCGRG00001000327) #7	Kctd9 (ENSCGRG00001022797) #8	Cdca2 (ENSCGRG00001022349) #9	Ebf2 (ENSCGRG00001001432) #11	Ppp2r2a (ENSCGRG00001015307) #13	Bnip3l (ENSCGRG00001021504) #15	Pnma2 (ENSCGRG00001010753) #16	ENSCGRG00001010421	Dpysl2 (ENSCGRG00001016379) #18	Adra1a (ENSCGRG00001023093) #19	Stmn4 (ENSCGRG00001008937) #20	ENSCGRG00001009280	Trim35 (ENSCGRG00001019610) #21	Ptk2b (ENSCGRG00001013042) #22	Chrna2 (ENSCGRG00001025060) #23	ENSCGRG00001003198 ##34	Ephx2 (ENSCGRG00001003555) #24	Adam2 (ENSCGRG00001012300)	Gulo (ENSCGRG00001019987)	Clu (ENSCGRG00001021841) #25	Scara3 (ENSCGRG00001018699) #26	Ccdc25 (ENSCGRG00001014249) #27	Esco2 (ENSCGRG00001016894) #28	Pbk (ENSCGRG00001007773) #30	Scara5 (ENSCGRG00001004427) #31	Nuggc (ENSCGRG00001024841) #32	Elp3 (ENSCGRG00001002047) #33	Pnoc (ENSCGRG00001020999) #35	Zfp395 (ENSCGRG00001018152) #36
Golden Hamster	MODERN SPECIES	670		ENSMAUG00000017900	ENSMAUG00000005425	Dock5 (ENSMAUG00000008971)	Gnrh1 (ENSMAUG00000008244) #7	Kctd9 (ENSMAUG00000012597) #8	Cdca2 (ENSMAUG00000011109) #9	Ebf2 (ENSMAUG00000015832) #11	Ppp2r2a (ENSMAUG00000019855) #13	Bnip3l (ENSMAUG00000007015) #15	ENSMAUG00000020770	Dpysl2 (ENSMAUG00000006007) #18	Adra1a (ENSMAUG00000019248) #19	Stmn4 (ENSMAUG00000012567) #20	Trim35 (ENSMAUG00000010808) #21	Ptk2b (ENSMAUG00000018808) #22	Chrna2 (ENSMAUG00000009044) #23	Ephx2 (ENSMAUG00000010745) #24	Adam2 (ENSMAUG00000021964)	Gulo (ENSMAUG00000013257)	Clu (ENSMAUG00000001027) #25	Scara3 (ENSMAUG00000008370) #26	Ccdc25 (ENSMAUG00000018478) #27	Esco2 (ENSMAUG00000018840) #28	Pbk (ENSMAUG00000000786) #30	Scara5 (ENSMAUG00000012698) #31	Nuggc (ENSMAUG00000014486) #32	Elp3 (ENSMAUG00000013672) #33	Pnoc (ENSMAUG00000005940) #35	ENSMAUG00000019639 #36	Fbxo16 (ENSMAUG00000014801) #37
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Mus	ANCESTRAL SPECIES	8	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a.y #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00860000136174	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a.y #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00860000136174	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Mus_C	ANCESTRAL SPECIES	20	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a.y #13	ENSGT00390000013415.a.b.p #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00860000136257	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00860000136174	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00940000161961	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164057	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Steppe mouse	MODERN SPECIES	3151					ENSMSIG00000019082	ENSMSIG00000019073	Ebf2 (ENSMSIG00000019023) #11	Ppp2r2a (ENSMSIG00000018898) #13	Bnip3l (ENSMSIG00000018832) #15	Pnma2 (ENSMSIG00000018820) #16	ENSMSIG00000018813	Dpysl2 (ENSMSIG00000018782) #18	Adra1a (ENSMSIG00000018756) #19	Stmn4 (ENSMSIG00000018673) #20	Trim35 (ENSMSIG00000018652) #21	Ptk2b (ENSMSIG00000018459) #22	Chrna2 (ENSMSIG00000018435) #23	Ephx2 (ENSMSIG00000018278) #24	Adam2 (ENSMSIG00000018204)	Gulo (ENSMSIG00000018184)	Clu (ENSMSIG00000018167) #25	ENSMSIG00000018158	Scara3 (ENSMSIG00000018143) #26	Ccdc25 (ENSMSIG00000018125) #27	Esco2 (ENSMSIG00000018109) #28	Pbk (ENSMSIG00000018084) #30	Scara5 (ENSMSIG00000018046) #31	ENSMSIG00000017984	Elp3 (ENSMSIG00000017928) #33	Pnoc (ENSMSIG00000017918) #35	Zfp395 (ENSMSIG00000017885) #36
spretus	MODERN SPECIES	5	Nefm (MGP_SPRETEiJ_G0020344)	Dock5 (MGP_SPRETEiJ_G0020343)	Gnrh1 (MGP_SPRETEiJ_G0020342) #7	Kctd9 (MGP_SPRETEiJ_G0020341) #8	Cdca2 (MGP_SPRETEiJ_G0020340) #9	Ebf2 (MGP_SPRETEiJ_G0020339) #11	Ppp2r2a (MGP_SPRETEiJ_G0020338) #13	Bnip3l (MGP_SPRETEiJ_G0020337) #15	Pnma2 (MGP_SPRETEiJ_G0020336) #16	MGP_SPRETEiJ_G0020335	Dpysl2 (MGP_SPRETEiJ_G0020334) #18	MGP_SPRETEiJ_G0020333	Adra1a (MGP_SPRETEiJ_G0020332) #19	Stmn4 (MGP_SPRETEiJ_G0020331) #20	Trim35 (MGP_SPRETEiJ_G0020330) #21	Ptk2b (MGP_SPRETEiJ_G0020329) #22	Chrna2 (MGP_SPRETEiJ_G0020328) #23	Ephx2 (MGP_SPRETEiJ_G0020327) #24	Adam2 (MGP_SPRETEiJ_G0020326)	Gulo (MGP_SPRETEiJ_G0020325)	Clu (MGP_SPRETEiJ_G0020324) #25	Scara3 (MGP_SPRETEiJ_G0020323) #26	Ccdc25 (MGP_SPRETEiJ_G0020322) #27	Esco2 (MGP_SPRETEiJ_G0020321) #28	Pbk (MGP_SPRETEiJ_G0020320) #30	Scara5 (MGP_SPRETEiJ_G0020319) #31	MGP_SPRETEiJ_G0020318	Elp3 (MGP_SPRETEiJ_G0020317) #33	Pnoc (MGP_SPRETEiJ_G0020316) #35	Zfp395 (MGP_SPRETEiJ_G0020315) #36	Fbxo16 (MGP_SPRETEiJ_G0020314) #37
Mouse	MODERN SPECIES	5	Adam7 (ENSMUSG00000022056)	Nefl (ENSMUSG00000022055)	Nefm (ENSMUSG00000022054)	Dock5 (ENSMUSG00000044447)	Gnrh1 (ENSMUSG00000015812) #7	Kctd9 (ENSMUSG00000034327) #8	Cdca2 (ENSMUSG00000048922) #9	Ebf2 (ENSMUSG00000022053) #11	Ppp2r2a (ENSMUSG00000022052) #13	Bnip3l (ENSMUSG00000022051) #15	Pnma2 (ENSMUSG00000046204) #16	Dpysl2 (ENSMUSG00000022048) #18	Adra1a (ENSMUSG00000045875) #19	Stmn4 (ENSMUSG00000022044) #20	Trim35 (ENSMUSG00000022043) #21	Ptk2b (ENSMUSG00000059456) #22	Chrna2 (ENSMUSG00000022041) #23	Ephx2 (ENSMUSG00000022040) #24	Adam2 (ENSMUSG00000022039)	Gulo (ENSMUSG00000034450)	Clu (ENSMUSG00000022037) #25	Scara3 (ENSMUSG00000034463) #26	Ccdc25 (ENSMUSG00000022035) #27	Esco2 (ENSMUSG00000022034) #28	Pbk (ENSMUSG00000022033) #30	Scara5 (ENSMUSG00000022032) #31	Nuggc (ENSMUSG00000061356) #32	Elp3 (ENSMUSG00000022031) #33	Pnoc (ENSMUSG00000045731) #35	Zfp395 (ENSMUSG00000034522) #36	Fbxo16 (ENSMUSG00000034532) #37
Ryukyu mouse	MODERN SPECIES	5	Nefm (MGP_CAROLIEiJ_G0019452)	Dock5 (MGP_CAROLIEiJ_G0019451)	Gnrh1 (MGP_CAROLIEiJ_G0019450) #7	Kctd9 (MGP_CAROLIEiJ_G0019449) #8	Cdca2 (MGP_CAROLIEiJ_G0019448) #9	Ebf2 (MGP_CAROLIEiJ_G0019447) #11	MGP_CAROLIEiJ_G0019446 #13	Bnip3l (MGP_CAROLIEiJ_G0019445) #15	Pnma2 (MGP_CAROLIEiJ_G0019444) #16	MGP_CAROLIEiJ_G0019443	Dpysl2 (MGP_CAROLIEiJ_G0019442) #18	MGP_CAROLIEiJ_G0019441	Adra1a (MGP_CAROLIEiJ_G0019440) #19	Stmn4 (MGP_CAROLIEiJ_G0019439) #20	Trim35 (MGP_CAROLIEiJ_G0019438) #21	Ptk2b (MGP_CAROLIEiJ_G0019437) #22	Chrna2 (MGP_CAROLIEiJ_G0019436) #23	Ephx2 (MGP_CAROLIEiJ_G0019435) #24	Adam2 (MGP_CAROLIEiJ_G0019434)	Gulo (MGP_CAROLIEiJ_G0019433)	Clu (MGP_CAROLIEiJ_G0019432) #25	Scara3 (MGP_CAROLIEiJ_G0019431) #26	Ccdc25 (MGP_CAROLIEiJ_G0019430) #27	Esco2 (MGP_CAROLIEiJ_G0019429) #28	Pbk (MGP_CAROLIEiJ_G0019428) #30	Scara5 (MGP_CAROLIEiJ_G0019427) #31	Nuggc (MGP_CAROLIEiJ_G0019426) #32	Elp3 (MGP_CAROLIEiJ_G0019425) #33	Pnoc (MGP_CAROLIEiJ_G0019424) #35	Zfp395 (MGP_CAROLIEiJ_G0019423) #36	Fbxo16 (MGP_CAROLIEiJ_G0019422) #37
Shrew mouse	MODERN SPECIES	21	Adam7 (MGP_PahariEiJ_G0030471)	Nefl (MGP_PahariEiJ_G0030470)	Nefm (MGP_PahariEiJ_G0030469)	Dock5 (MGP_PahariEiJ_G0030468)	Gnrh1 (MGP_PahariEiJ_G0030467) #7	Kctd9 (MGP_PahariEiJ_G0030466) #8	Cdca2 (MGP_PahariEiJ_G0030465) #9	Ebf2 (MGP_PahariEiJ_G0030464) #11	Ppp2r2a (MGP_PahariEiJ_G0030463) #13	Bnip3l (MGP_PahariEiJ_G0030462) #15	MGP_PahariEiJ_G0030460	Dpysl2 (MGP_PahariEiJ_G0030459) #18	Adra1a (MGP_PahariEiJ_G0030458) #19	Stmn4 (MGP_PahariEiJ_G0030457) #20	Trim35 (MGP_PahariEiJ_G0030456) #21	Ptk2b (MGP_PahariEiJ_G0030455) #22	Chrna2 (MGP_PahariEiJ_G0030454) #23	Ephx2 (MGP_PahariEiJ_G0030453) #24	Adam2 (MGP_PahariEiJ_G0030452)	Gulo (MGP_PahariEiJ_G0030451)	Clu (MGP_PahariEiJ_G0030450) #25	Scara3 (MGP_PahariEiJ_G0030449) #26	Ccdc25 (MGP_PahariEiJ_G0030448) #27	Esco2 (MGP_PahariEiJ_G0030447) #28	Pbk (MGP_PahariEiJ_G0030446) #30	Scara5 (MGP_PahariEiJ_G0030445) #31	MGP_PahariEiJ_G0030444	Elp3 (MGP_PahariEiJ_G0030443) #33	Pnoc (MGP_PahariEiJ_G0030442) #35	Zfp395 (MGP_PahariEiJ_G0030441) #36	Fbxo16 (MGP_PahariEiJ_G0030440) #37
Rat	MODERN SPECIES	6	Nefl (ENSRNOG00000013658)	LOC120097172 (ENSRNOG00000031532)	Dock5 (ENSRNOG00000024703)	Gnrh1 (ENSRNOG00000013433)	Kctd9 (ENSRNOG00000012951) #8	Gnrh1 (ENSRNOG00000066847) #7	Cdca2 (ENSRNOG00000025302) #9	Ebf2 (ENSRNOG00000011548) #11	Ppp2r2a (ENSRNOG00000011158) #13	Bnip3l (ENSRNOG00000009820) #15	Pnma2 (ENSRNOG00000009815) #16	Dpysl2 (ENSRNOG00000009625) #18	Adra1a (ENSRNOG00000009522) #19	Stmn4 (ENSRNOG00000053334) #20	Trim35 (ENSRNOG00000009449) #21	Ptk2b (ENSRNOG00000027839) #22	Chrna2 (ENSRNOG00000017424) #23	Ephx2 (ENSRNOG00000017286) #24	Adam2 (ENSRNOG00000017027)	Gulo (ENSRNOG00000016648)	Clu (ENSRNOG00000016460) #25	Scara3 (ENSRNOG00000016177) #26	Ccdc25 (ENSRNOG00000015939) #27	Esco2 (ENSRNOG00000015921) #28	Pbk (ENSRNOG00000015308) #30	Scara5 (ENSRNOG00000014398) #31	Nuggc (ENSRNOG00000018238)	AABR07018244.1 (ENSRNOG00000048585)	AABR07018244.2 (ENSRNOG00000058011)	Elp3 (ENSRNOG00000014291) #33	Pnoc (ENSRNOG00000014231) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	589														Stmn4 (ENSNGAG00000019172) #20	Trim35 (ENSNGAG00000023890) #21	Ptk2b (ENSNGAG00000023988) #22	Chrna2 (ENSNGAG00000023099) #23	Ephx2 (ENSNGAG00000022968) #24	Adam2 (ENSNGAG00000005586)	Gulo (ENSNGAG00000024191)	Clu (ENSNGAG00000013029) #25	Scara3 (ENSNGAG00000023203) #26	Ccdc25 (ENSNGAG00000018920) #27	Esco2 (ENSNGAG00000013208) #28	Pbk (ENSNGAG00000023879) #30	Scara5 (ENSNGAG00000006829) #31	Nuggc (ENSNGAG00000022052) #32	Elp3 (ENSNGAG00000004373) #33	Pnoc (ENSNGAG00000013397) #35	Zfp395 (ENSNGAG00000004006) #36	Fbxo16 (ENSNGAG00000012031) #37
Lesser Egyptian jerboa	MODERN SPECIES	125	Adam7 (ENSJJAG00000016655)	Nefm (ENSJJAG00000018709)	Nefl (ENSJJAG00000011034)	Dock5 (ENSJJAG00000012658)	Gnrh1 (ENSJJAG00000013753) #7	Kctd9 (ENSJJAG00000014248) #8	ENSJJAG00000016051 #9	Ebf2 (ENSJJAG00000018635) #11	Ppp2r2a (ENSJJAG00000020800) #13	ENSJJAG00000021430 #15	Dpysl2 (ENSJJAG00000021965) #18	Adra1a (ENSJJAG00000008597) #19	Stmn4 (ENSJJAG00000010283) #20	ENSJJAG00000011170	Trim35 (ENSJJAG00000011832) #21	Ptk2b (ENSJJAG00000013115) #22	Chrna2 (ENSJJAG00000018111) #23	Ephx2 (ENSJJAG00000021412) #24	Adam2 (ENSJJAG00000021729)	Gulo (ENSJJAG00000008997)	Clu (ENSJJAG00000011133) #25	Scara3 (ENSJJAG00000015535) #26	ENSJJAG00000016351 #27	Esco2 (ENSJJAG00000016831) #28	ENSJJAG00000013978 #30	Scara5 (ENSJJAG00000015781) #31	Nuggc (ENSJJAG00000020439) #32	Pik3c3 (ENSJJAG00000000136)	ENSJJAG00000018157	Rit2 (ENSJJAG00000021302)	Syt4 (ENSJJAG00000022564)
Kangaroo rat	MODERN SPECIES	393														Stmn4 (ENSDORG00000010266) #20	Trim35 (ENSDORG00000010264) #21	Ptk2b (ENSDORG00000010200) #22	Chrna2 (ENSDORG00000010203) #23	Ephx2 (ENSDORG00000010204) #24	Adam2 (ENSDORG00000002055)	Gulo (ENSDORG00000024023)	Clu (ENSDORG00000010249) #25	Scara3 (ENSDORG00000015368) #26	Ccdc25 (ENSDORG00000006595) #27	Esco2 (ENSDORG00000014897) #28	Scara5 (ENSDORG00000010511) #31	Nuggc (ENSDORG00000012444) #32	Elp3 (ENSDORG00000012451) #33	Pnoc (ENSDORG00000005053) #35	Zfp395 (ENSDORG00000005052) #36	Fbxo16 (ENSDORG00000009764) #37	Fzd3 (ENSDORG00000026500)
Laurasiatheria	ANCESTRAL SPECIES	24	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00950000185082	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36
Eulipotyphla	ANCESTRAL SPECIES	1680																ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23
Hedgehog	MODERN SPECIES	2159																PTK2B (ENSEEUG00000009385) #22	CHRNA2 (ENSEEUG00000009627) #23
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00950000185082	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00950000185082	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Suina	ANCESTRAL SPECIES	42	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00950000185082	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Pig	MODERN SPECIES	5	ENSSSCG00000009648	NEFL (ENSSSCG00000009649)	DOCK5 (ENSSSCG00000009650)	GNRH1 (ENSSSCG00000009651) #7	KCTD9 (ENSSSCG00000009652) #8	CDCA2 (ENSSSCG00000009653) #9	ENSSSCG00000042774	EBF2 (ENSSSCG00000009655) #11	PPP2R2A (ENSSSCG00000009657) #13	BNIP3L (ENSSSCG00000009658) #15	PNMA2 (ENSSSCG00000009659) #16	DPYSL2 (ENSSSCG00000030130) #18	ADRA1A (ENSSSCG00000009661) #19	STMN4 (ENSSSCG00000009662) #20	TRIM35 (ENSSSCG00000033325) #21	PTK2B (ENSSSCG00000009664) #22	CHRNA2 (ENSSSCG00000009665) #23	EPHX2 (ENSSSCG00000009666) #24	ENSSSCG00000009667	CLU (ENSSSCG00000009668) #25	SCARA3 (ENSSSCG00000020846) #26	CCDC25 (ENSSSCG00000024972) #27	ENSSSCG00000050594	ENSSSCG00000009670 #28	PBK (ENSSSCG00000009671) #30	ENSSSCG00000009672 #31	NUGGC (ENSSSCG00000009673) #32	ELP3 (ENSSSCG00000009674) #33	PNOC (ENSSSCG00000032600) #35	ZNF395 (ENSSSCG00000009676) #36	ENSSSCG00000058717
Chacoan peccary	MODERN SPECIES	813	ADAM7 (ENSCWAG00000013998)	ENSCWAG00000013920	NEFL (ENSCWAG00000013873)	DOCK5 (ENSCWAG00000013368)	GNRH1 (ENSCWAG00000013307) #7	KCTD9 (ENSCWAG00000013249) #8	CDCA2 (ENSCWAG00000012969) #9	EBF2 (ENSCWAG00000012599) #11	PPP2R2A (ENSCWAG00000012404) #13	BNIP3L (ENSCWAG00000012345) #15	PNMA2 (ENSCWAG00000012323) #16	DPYSL2 (ENSCWAG00000012142) #18	ADRA1A (ENSCWAG00000012091) #19	STMN4 (ENSCWAG00000011950) #20	TRIM35 (ENSCWAG00000011889) #21	PTK2B (ENSCWAG00000011805) #22	CHRNA2 (ENSCWAG00000010830) #23	EPHX2 (ENSCWAG00000009691) #24	ENSCWAG00000009543	CLU (ENSCWAG00000009499) #25	SCARA3 (ENSCWAG00000009341) #26	CCDC25 (ENSCWAG00000009241) #27	ESCO2 (ENSCWAG00000009108) #28	PBK (ENSCWAG00000009029) #30	SCARA5 (ENSCWAG00000008565) #31	NUGGC (ENSCWAG00000008378) #32	ELP3 (ENSCWAG00000008132) #33	PNOC (ENSCWAG00000008025) #35	ZNF395 (ENSCWAG00000019168) #36	FBXO16 (ENSCWAG00000019090) #37	FZD3 (ENSCWAG00000019052)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Dolphin	MODERN SPECIES	69																PTK2B (ENSTTRG00000002373) #22	CHRNA2 (ENSTTRG00000002378) #23	EPHX2 (ENSTTRG00000002379) #24
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.d	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.d	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Beluga whale	MODERN SPECIES	4	ENSDLEG00000006462	DOCK5 (ENSDLEG00000002343)	GNRH1 (ENSDLEG00000001435) #7	KCTD9 (ENSDLEG00000001415) #8	CDCA2 (ENSDLEG00000001385) #9	ENSDLEG00000001380	EBF2 (ENSDLEG00000001316) #11	ENSDLEG00000001289	PPP2R2A (ENSDLEG00000001272) #13	BNIP3L (ENSDLEG00000001250) #15	PNMA2 (ENSDLEG00000001239) #16	DPYSL2 (ENSDLEG00000001186) #18	ADRA1A (ENSDLEG00000001167) #19	STMN4 (ENSDLEG00000001142) #20	TRIM35 (ENSDLEG00000001119) #21	PTK2B (ENSDLEG00000001086) #22	CHRNA2 (ENSDLEG00000001068) #23	ENSDLEG00000001060	EPHX2 (ENSDLEG00000001005) #24	ENSDLEG00000000969	CLU (ENSDLEG00000000957) #25	SCARA3 (ENSDLEG00000000924) #26	CCDC25 (ENSDLEG00000000874) #27	ESCO2 (ENSDLEG00000000836) #28	PBK (ENSDLEG00000000821) #30	SCARA5 (ENSDLEG00000000809) #31	NUGGC (ENSDLEG00000000778) #32	ELP3 (ENSDLEG00000000751) #33	PNOC (ENSDLEG00000000739) #35	ZNF395 (ENSDLEG00000000713) #36	FBXO16 (ENSDLEG00000000679) #37
Narwhal	MODERN SPECIES	312	ENSMMNG00015019196	NEFL (ENSMMNG00015019153)	DOCK5 (ENSMMNG00015019103)	GNRH1 (ENSMMNG00015019060) #7	KCTD9 (ENSMMNG00015019003) #8	CDCA2 (ENSMMNG00015018900) #9	EBF2 (ENSMMNG00015018863) #11	ENSMMNG00015018827	PPP2R2A (ENSMMNG00015018714) #13	BNIP3L (ENSMMNG00015018649) #15	PNMA2 (ENSMMNG00015018639) #16	DPYSL2 (ENSMMNG00015018544) #18	ADRA1A (ENSMMNG00015018492) #19	STMN4 (ENSMMNG00015018331) #20	TRIM35 (ENSMMNG00015018089) #21	PTK2B (ENSMMNG00015017976) #22	CHRNA2 (ENSMMNG00015017861) #23	ENSMMNG00015017835	EPHX2 (ENSMMNG00015017668) #24	ENSMMNG00015017581	CLU (ENSMMNG00015017554) #25	SCARA3 (ENSMMNG00015017508) #26	CCDC25 (ENSMMNG00015017427) #27	ESCO2 (ENSMMNG00015017357) #28	PBK (ENSMMNG00015017312) #30	SCARA5 (ENSMMNG00015017197) #31	NUGGC (ENSMMNG00015017103) #32	ELP3 (ENSMMNG00015017014) #33	PNOC (ENSMMNG00015016968) #35	ZNF395 (ENSMMNG00015016926) #36	FBXO16 (ENSMMNG00015016791) #37
Vaquita	MODERN SPECIES	17	ENSPSNG00000003996	GNRH1 (ENSPSNG00000004028) #7	KCTD9 (ENSPSNG00000009803) #8	CDCA2 (ENSPSNG00000009875) #9	ENSPSNG00000010183	ENSPSNG00000010228	EBF2 (ENSPSNG00000010256) #11	ENSPSNG00000010536	PPP2R2A (ENSPSNG00000010594) #13	BNIP3L (ENSPSNG00000010778) #15	PNMA2 (ENSPSNG00000010857) #16	DPYSL2 (ENSPSNG00000010930) #18	ADRA1A (ENSPSNG00000011198) #19	STMN4 (ENSPSNG00000011305) #20	TRIM35 (ENSPSNG00000011632) #21	PTK2B (ENSPSNG00000011703) #22	CHRNA2 (ENSPSNG00000011813) #23	ENSPSNG00000011878	CLU (ENSPSNG00000011914) #25	SCARA3 (ENSPSNG00000011999) #26	CCDC25 (ENSPSNG00000012132) #27	ESCO2 (ENSPSNG00000012224) #28	PBK (ENSPSNG00000012263) #30	SCARA5 (ENSPSNG00000012329) #31	NUGGC (ENSPSNG00000012623) #32	ELP3 (ENSPSNG00000012827) #33	PNOC (ENSPSNG00000013048) #35	ZNF395 (ENSPSNG00000013118) #36	FBXO16 (ENSPSNG00000013266) #37	FZD3 (ENSPSNG00000013472)	EXTL3 (ENSPSNG00000013526)
Sperm whale	MODERN SPECIES	20	NEFL (ENSPCTG00005001011)	DOCK5 (ENSPCTG00005001083)	GNRH1 (ENSPCTG00005001298) #7	KCTD9 (ENSPCTG00005001337) #8	CDCA2 (ENSPCTG00005001413) #9	ENSPCTG00005001468	EBF2 (ENSPCTG00005001486) #11	PPP2R2A (ENSPCTG00005001540) #13	BNIP3L (ENSPCTG00005001600) #15	PNMA2 (ENSPCTG00005001626) #16	DPYSL2 (ENSPCTG00005001664) #18	ADRA1A (ENSPCTG00005001727) #19	ENSPCTG00005001739	STMN4 (ENSPCTG00005001782) #20	TRIM35 (ENSPCTG00005001833) #21	PTK2B (ENSPCTG00005001853) #22	CHRNA2 (ENSPCTG00005001881) #23	EPHX2 (ENSPCTG00005001921) #24	ENSPCTG00005001945	CCDC25 (ENSPCTG00005001956) #27	ESCO2 (ENSPCTG00005001985) #28	PBK (ENSPCTG00005002003) #30	SCARA5 (ENSPCTG00005002037) #31	PNOC (ENSPCTG00005002088) #35	ELP3 (ENSPCTG00005002119) #33	FBXO16 (ENSPCTG00005002188) #37	FZD3 (ENSPCTG00005002245)	EXTL3 (ENSPCTG00005002269)	INTS9 (ENSPCTG00005002331)	ENSPCTG00005002455	HMBOX1 (ENSPCTG00005002479)
Blue whale	MODERN SPECIES	17	ENSBMSG00010001706	NEFM (ENSBMSG00010001692)	NEFL (ENSBMSG00010001677)	DOCK5 (ENSBMSG00010001626)	GNRH1 (ENSBMSG00010001589) #7	KCTD9 (ENSBMSG00010001525) #8	CDCA2 (ENSBMSG00010001504) #9	EBF2 (ENSBMSG00010001470) #11	PPP2R2A (ENSBMSG00010001403) #13	ENSBMSG00010001374 #15	PNMA2 (ENSBMSG00010001359) #16	DPYSL2 (ENSBMSG00010001313) #18	ADRA1A (ENSBMSG00010001276) #19	STMN4 (ENSBMSG00010001170) #20	TRIM35 (ENSBMSG00010001057) #21	PTK2B (ENSBMSG00010001018) #22	CHRNA2 (ENSBMSG00010000975) #23	ENSBMSG00010000956	EPHX2 (ENSBMSG00010000918) #24	ENSBMSG00010000884	CLU (ENSBMSG00010000855) #25	SCARA3 (ENSBMSG00010000815) #26	CCDC25 (ENSBMSG00010000771) #27	ESCO2 (ENSBMSG00010000749) #28	PBK (ENSBMSG00010000730) #30	SCARA5 (ENSBMSG00010000607) #31	NUGGC (ENSBMSG00010000532) #32	ELP3 (ENSBMSG00010000472) #33	PNOC (ENSBMSG00010000426) #35	ZNF395 (ENSBMSG00010000397) #36	FBXO16 (ENSBMSG00010000332) #37
Pecora	ANCESTRAL SPECIES	36	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021.c #37	ENSGT00940000156491.a
Percora_a	ANCESTRAL SPECIES	24	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839.l.a #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021.d #37	ENSGT00940000156491.a
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00510000048121.j	ENSGT00530000065109.h	ENSGT00530000063668.B.b #25	ENSGT00940000156806	ENSGT00940000153558.b.i.b.a.a.h	ENSGT00940000155007	ENSGT00940000155244	ENSGT00530000064269	ENSGT00450000040296	ENSGT00550000074817	ENSGT00940000156325	ENSGT00940000159054
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00510000048121.j	ENSGT00530000065109.h	ENSGT00530000063668.B.b #25	ENSGT00940000156806	ENSGT00940000153558.b.i.b.a.a.h	ENSGT00940000155007	ENSGT00940000155244	ENSGT00530000064269	ENSGT00450000040296	ENSGT00550000074817	ENSGT00940000156325	ENSGT00940000159054
Bos	ANCESTRAL SPECIES	10	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00510000048121.j	ENSGT00530000065109.h	ENSGT00530000063668.B.b #25	ENSGT00940000156806	ENSGT00940000153558.b.i.b.a.a.h	ENSGT00940000155007	ENSGT00940000155244	ENSGT00530000064269	ENSGT00450000040296	ENSGT00550000074817	ENSGT00940000156325	ENSGT00940000159054
Bos_a	ANCESTRAL SPECIES	20	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00510000048121.j	ENSGT00530000065109.h	ENSGT00530000063668.B.b #25	ENSGT00940000156806	ENSGT00940000153558.b.i.b.a.a.h	ENSGT00940000155007	ENSGT00940000155244	ENSGT00530000064269	ENSGT00450000040296	ENSGT00550000074817	ENSGT00940000156325	ENSGT00940000159054
Wild yak	MODERN SPECIES	1486		NEFM (ENSBMUG00000016293)	NEFL (ENSBMUG00000016301)	DOCK5 (ENSBMUG00000016356)	GNRH1 (ENSBMUG00000016371) #7	KCTD9 (ENSBMUG00000016419) #8	CDCA2 (ENSBMUG00000016433) #9	EBF2 (ENSBMUG00000016447) #11	PPP2R2A (ENSBMUG00000016501) #13	BNIP3L (ENSBMUG00000016521) #15	PNMA2 (ENSBMUG00000016534) #16	DPYSL2 (ENSBMUG00000016569) #18	ADRA1A (ENSBMUG00000016609) #19	STMN4 (ENSBMUG00000016672) #20	TRIM35 (ENSBMUG00000016700) #21	PTK2B (ENSBMUG00000016777) #22	CHRNA2 (ENSBMUG00000016831) #23	EPHX2 (ENSBMUG00000016915) #24	ENSBMUG00000016973	ENSBMUG00000016981	ENSBMUG00000016995 #25	APTX (ENSBMUG00000017120)	ENSBMUG00000017193	SMU1 (ENSBMUG00000017207)	B4GALT1 (ENSBMUG00000017297)	SPINK4 (ENSBMUG00000017335)	BAG1 (ENSBMUG00000017355)	CHMP5 (ENSBMUG00000017388)	NFX1 (ENSBMUG00000017416)	ENSBMUG00000017436	AQP3 (ENSBMUG00000017453)
Domestic yak	MODERN SPECIES	26	NEFL (ENSBGRG00000015850)	ENSBGRG00000015920	DOCK5 (ENSBGRG00000015972)	GNRH1 (ENSBGRG00000016731) #7	KCTD9 (ENSBGRG00000016782) #8	CDCA2 (ENSBGRG00000016906) #9	EBF2 (ENSBGRG00000017109) #11	PPP2R2A (ENSBGRG00000000395) #13	ENSBGRG00000000444 #15	ENSBGRG00000000482	PNMA2 (ENSBGRG00000000490) #16	DPYSL2 (ENSBGRG00000000520) #18	ADRA1A (ENSBGRG00000000703) #19	STMN4 (ENSBGRG00000000736) #20	TRIM35 (ENSBGRG00000000766) #21	PTK2B (ENSBGRG00000000804) #22	CHRNA2 (ENSBGRG00000000968) #23	EPHX2 (ENSBGRG00000000999) #24	ENSBGRG00000001069	ENSBGRG00000001133	ENSBGRG00000001154	ENSBGRG00000001185 #25	APTX (ENSBGRG00000001249)	ENSBGRG00000001318	SMU1 (ENSBGRG00000001340)	B4GALT1 (ENSBGRG00000001391)	SPINK4 (ENSBGRG00000001418)	BAG1 (ENSBGRG00000001436)	CHMP5 (ENSBGRG00000001451)	NFX1 (ENSBGRG00000001485)	ENSBGRG00000001565
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B.b #25	ENSGT00940000156806	ENSGT00940000153558.b.i.b.a.a.h	ENSGT00940000155007	ENSGT00940000155244	ENSGT00530000064269	ENSGT00450000040296	ENSGT00550000074817	ENSGT00940000156325	ENSGT00940000159054	ENSGT00940000157242	ENSGT00390000018619
Cow	MODERN SPECIES	27	ADAM7 (ENSBTAG00000039171)	NEFM (ENSBTAG00000039530)	NEFL (ENSBTAG00000021949)	DOCK5 (ENSBTAG00000015513)	GNRH1 (ENSBTAG00000000164) #7	KCTD9 (ENSBTAG00000012382) #8	CDCA2 (ENSBTAG00000002756) #9	EBF2 (ENSBTAG00000040390) #11	PPP2R2A (ENSBTAG00000018317) #13	BNIP3L (ENSBTAG00000021307) #15	PNMA2 (ENSBTAG00000037986) #16	DPYSL2 (ENSBTAG00000018373) #18	ADRA1A (ENSBTAG00000031632) #19	STMN4 (ENSBTAG00000017627) #20	TRIM35 (ENSBTAG00000009958) #21	PTK2B (ENSBTAG00000005958) #22	CHRNA2 (ENSBTAG00000002252) #23	EPHX2 (ENSBTAG00000015241) #24	GULO (ENSBTAG00000026748)	ENSBTAG00000015027 #25	APTX (ENSBTAG00000013947)	DNAJA1 (ENSBTAG00000016265)	SMU1 (ENSBTAG00000019564)	B4GALT1 (ENSBTAG00000015249)	ENSBTAG00000051334	SPINK4 (ENSBTAG00000032093)	BAG1 (ENSBTAG00000017845)	CHMP5 (ENSBTAG00000012383)	NFX1 (ENSBTAG00000012385)	AQP7 (ENSBTAG00000020105)	AQP3 (ENSBTAG00000008493)
Hybrid Bos Indicus	MODERN SPECIES	27	ADAM7 (ENSBIXG00005024699)	NEFM (ENSBIXG00005002572)	NEFL (ENSBIXG00005024596)	DOCK5 (ENSBIXG00005024516)	GNRH1 (ENSBIXG00005024264) #7	KCTD9 (ENSBIXG00005004143) #8	CDCA2 (ENSBIXG00005024231) #9	EBF2 (ENSBIXG00005024188) #11	PPP2R2A (ENSBIXG00005024066) #13	ENSBIXG00005023958	PNMA2 (ENSBIXG00005023950) #16	DPYSL2 (ENSBIXG00005004091) #18	ADRA1A (ENSBIXG00005023744) #19	STMN4 (ENSBIXG00005023682) #20	TRIM35 (ENSBIXG00005023617) #21	PTK2B (ENSBIXG00005023549) #22	ENSBIXG00005023343 #23	EPHX2 (ENSBIXG00005023266) #24	ENSBIXG00005007577	ENSBIXG00005023012	ENSBIXG00005022965 #25	APTX (ENSBIXG00005022727)	ENSBIXG00005022648	SMU1 (ENSBIXG00005006517)	ENSBIXG00005022605	B4GALT1 (ENSBIXG00005003859)	SPINK4 (ENSBIXG00005022588)	BAG1 (ENSBIXG00005022572)	CHMP5 (ENSBIXG00005022511)	NFX1 (ENSBIXG00005022478)	ENSBIXG00005022448
American bison	MODERN SPECIES	3064	NEFL (ENSBBBG00000010785)	NEFM (ENSBBBG00000010802)	DOCK5 (ENSBBBG00000010849)	GNRH1 (ENSBBBG00000010860) #7	KCTD9 (ENSBBBG00000001907) #8	CDCA2 (ENSBBBG00000010883) #9	EBF2 (ENSBBBG00000010900) #11	ENSBBBG00000001938	PPP2R2A (ENSBBBG00000010922) #13	BNIP3L (ENSBBBG00000001943) #15	PNMA2 (ENSBBBG00000001944) #16	DPYSL2 (ENSBBBG00000010977) #18	ADRA1A (ENSBBBG00000001967) #19	STMN4 (ENSBBBG00000011014) #20	ENSBBBG00000011020 #21	PTK2B (ENSBBBG00000002002) #22	CHRNA2 (ENSBBBG00000011130) #23	EPHX2 (ENSBBBG00000011228) #24	ENSBBBG00000007068	ENSBBBG00000011270 #25	APTX (ENSBBBG00000011383)	ENSBBBG00000011395	SMU1 (ENSBBBG00000006981)	B4GALT1 (ENSBBBG00000002091)	SPINK4 (ENSBBBG00000002093)	BAG1 (ENSBBBG00000011456)	CHMP5 (ENSBBBG00000011485)	NFX1 (ENSBBBG00000011527)	ENSBBBG00000011580	AQP3 (ENSBBBG00000011604)	NOL6 (ENSBBBG00000002142)
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000161406	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000065109.h	ENSGT00530000063668.B.b #25	ENSGT00940000156806	ENSGT00940000153558.b.i.b.a.a.h	ENSGT00940000155007	ENSGT00940000155244	ENSGT00530000064269	ENSGT00450000040296.a	ENSGT00550000074817	ENSGT00940000156325	ENSGT00940000159054	ENSGT00940000157242
Goat	MODERN SPECIES	27	ADAM7 (ENSCHIG00000015652)	NEFM (ENSCHIG00000019945)	NEFL (ENSCHIG00000011951)	DOCK5 (ENSCHIG00000001085)	GNRH1 (ENSCHIG00000016406) #7	KCTD9 (ENSCHIG00000015791) #8	CDCA2 (ENSCHIG00000018580) #9	EBF2 (ENSCHIG00000023729) #11	PPP2R2A (ENSCHIG00000007473) #13	ENSCHIG00000024818 #15	PNMA2 (ENSCHIG00000002000) #16	DPYSL2 (ENSCHIG00000026845) #18	ADRA1A (ENSCHIG00000021001) #19	STMN4 (ENSCHIG00000020412) #20	TRIM35 (ENSCHIG00000009723) #21	PTK2B (ENSCHIG00000026234) #22	CHRNA2 (ENSCHIG00000018927) #23	EPHX2 (ENSCHIG00000007111) #24	ENSCHIG00000008405	ENSCHIG00000015473	ENSCHIG00000026235	ENSCHIG00000020043 #25	APTX (ENSCHIG00000012896)	ENSCHIG00000015674	SMU1 (ENSCHIG00000027107)	ENSCHIG00000013974	B4GALT1 (ENSCHIG00000026540)	SPINK4 (ENSCHIG00000010389)	ENSCHIG00000023332	CHMP5 (ENSCHIG00000026558)	NFX1 (ENSCHIG00000020037)
Rambouillet Sheep	MODERN SPECIES	11	NEFM (ENSOARG00020017740)	NEFL (ENSOARG00020017673)	GNRH1 (ENSOARG00020017575) #7	DOCK5 (ENSOARG00020014672)	KCTD9 (ENSOARG00020014450) #8	CDCA2 (ENSOARG00020014388) #9	EBF2 (ENSOARG00020014139) #11	PPP2R2A (ENSOARG00020013913) #13	ENSOARG00020013834 #15	PNMA2 (ENSOARG00020013810) #16	DPYSL2 (ENSOARG00020013413) #18	ENSOARG00020013277	ADRA1A (ENSOARG00020013199) #19	STMN4 (ENSOARG00020013017) #20	TRIM35 (ENSOARG00020012904) #21	PTK2B (ENSOARG00020012073) #22	CHRNA2 (ENSOARG00020011996) #23	EPHX2 (ENSOARG00020011756) #24	ENSOARG00020011644	ENSOARG00020011616	ENSOARG00020011544 #25	APTX (ENSOARG00020011077)	ENSOARG00020011015	ENSOARG00020010953	B4GALT1 (ENSOARG00020010870)	SPINK4 (ENSOARG00020010799)	BAG1 (ENSOARG00020010635)	ENSOARG00020010532	NFX1 (ENSOARG00020009715)	ENSOARG00020009249	AQP3 (ENSOARG00020009201)
Siberian musk deer	MODERN SPECIES	327	DOCK5 (ENSMMSG00000005425)	GNRH1 (ENSMMSG00000005726) #7	KCTD9 (ENSMMSG00000005761) #8	CDCA2 (ENSMMSG00000005842) #9	EBF2 (ENSMMSG00000005908) #11	ENSMMSG00000005972 #13	BNIP3L (ENSMMSG00000006092) #15	DPYSL2 (ENSMMSG00000006136) #18	ENSMMSG00000006237	ADRA1A (ENSMMSG00000006243) #19	ENSMMSG00000006250	ENSMMSG00000006269	ENSMMSG00000006276	STMN4 (ENSMMSG00000006293) #20	TRIM35 (ENSMMSG00000006491) #21	PTK2B (ENSMMSG00000006593) #22	CHRNA2 (ENSMMSG00000006874) #23	EPHX2 (ENSMMSG00000006938) #24	ENSMMSG00000007169	ENSMMSG00000007188	APTX (ENSMMSG00000007235)	ENSMMSG00000007889	SMU1 (ENSMMSG00000007911)	ENSMMSG00000007968	B4GALT1 (ENSMMSG00000007996)	ENSMMSG00000008023	BAG1 (ENSMMSG00000008081)	CHMP5 (ENSMMSG00000008123)	NFX1 (ENSMMSG00000008165)	ENSMMSG00000008262	AQP3 (ENSMMSG00000008500)
Yarkand deer	MODERN SPECIES	7	ADAMDEC1 (ENSCHYG00000026439)	ADAM7 (ENSCHYG00000026508)	NEFM (ENSCHYG00000026636)	NEFL (ENSCHYG00000026647)	DOCK5 (ENSCHYG00000026683)	GNRH1 (ENSCHYG00000026755) #7	KCTD9 (ENSCHYG00000026770) #8	CDCA2 (ENSCHYG00000026788) #9	EBF2 (ENSCHYG00000026813) #11	ENSCHYG00000026841 #13	ENSCHYG00000026854 #15	DPYSL2 (ENSCHYG00000026867) #18	ADRA1A (ENSCHYG00000004551) #19	STMN4 (ENSCHYG00000005084) #20	TRIM35 (ENSCHYG00000005184) #21	PTK2B (ENSCHYG00000005281) #22	CHRNA2 (ENSCHYG00000005610) #23	EPHX2 (ENSCHYG00000005702) #24	ENSCHYG00000006124	APTX (ENSCHYG00000006316)	ENSCHYG00000006506	SMU1 (ENSCHYG00000006551)	B4GALT1 (ENSCHYG00000006601)	SPINK4 (ENSCHYG00000006676)	BAG1 (ENSCHYG00000006708)	CHMP5 (ENSCHYG00000006782)	NFX1 (ENSCHYG00000006916)	ENSCHYG00000007386	AQP3 (ENSCHYG00000007458)	NOL6 (ENSCHYG00000007488)	UBE2R2 (ENSCHYG00000007612)
Camelidae	ANCESTRAL SPECIES	47	ENSGT00940000156716	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Arabian camel	MODERN SPECIES	24	NEFL (ENSCDRG00005018138)	DOCK5 (ENSCDRG00005018165)	GNRH1 (ENSCDRG00005018431) #7	KCTD9 (ENSCDRG00005018455) #8	CDCA2 (ENSCDRG00005018503) #9	EBF2 (ENSCDRG00005018634) #11	ENSCDRG00005018693	PPP2R2A (ENSCDRG00005018721) #13	BNIP3L (ENSCDRG00005018890) #15	PNMA2 (ENSCDRG00005018959) #16	DPYSL2 (ENSCDRG00005018995) #18	ADRA1A (ENSCDRG00005019146) #19	ENSCDRG00005019174	STMN4 (ENSCDRG00005019200) #20	TRIM35 (ENSCDRG00005019253) #21	PTK2B (ENSCDRG00005019294) #22	CHRNA2 (ENSCDRG00005019402) #23	EPHX2 (ENSCDRG00005019465) #24	ENSCDRG00005019569	CLU (ENSCDRG00005019585) #25	SCARA3 (ENSCDRG00005019603) #26	CCDC25 (ENSCDRG00005019631) #27	ESCO2 (ENSCDRG00005019654) #28	PBK (ENSCDRG00005019667) #30	SCARA5 (ENSCDRG00005019702) #31	NUGGC (ENSCDRG00005019727) #32	ELP3 (ENSCDRG00005019750) #33	PNOC (ENSCDRG00005019815) #35	ZNF395 (ENSCDRG00005019830) #36	FBXO16 (ENSCDRG00005019861) #37	FZD3 (ENSCDRG00005019948)
Alpaca	MODERN SPECIES	3483																ENSVPAG00000002755 #22	STMN4 (ENSVPAG00000002758) #20	TRIM35 (ENSVPAG00000002759) #21	ENSVPAG00000002760 #24
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Chiroptera	ANCESTRAL SPECIES	61														ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Microchiroptera	ANCESTRAL SPECIES	52														ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Microbat	MODERN SPECIES	938														STMN4 (ENSMLUG00000004431) #20	TRIM35 (ENSMLUG00000004435) #21	PTK2B (ENSMLUG00000010735) #22	CHRNA2 (ENSMLUG00000001512) #23	EPHX2 (ENSMLUG00000001519) #24	CLU (ENSMLUG00000006721) #25	SCARA3 (ENSMLUG00000006744) #26	CCDC25 (ENSMLUG00000006768) #27	ESCO2 (ENSMLUG00000006782) #28	PBK (ENSMLUG00000009596) #30	SCARA5 (ENSMLUG00000002306) #31	ENSMLUG00000013214	ELP3 (ENSMLUG00000013234) #33	PNOC (ENSMLUG00000027745) #35	ZNF395 (ENSMLUG00000009187) #36	FBXO16 (ENSMLUG00000027271) #37	FZD3 (ENSMLUG00000002208)	ENSMLUG00000026864
Greater horseshoe bat	MODERN SPECIES	9	ASIC5 (ENSRFEG00010009193)	TDO2 (ENSRFEG00010009230)	CTSO (ENSRFEG00010009264)	PDGFC (ENSRFEG00010009349)	GLRB (ENSRFEG00010009454)	GRIA2 (ENSRFEG00010009544)	GASK1B (ENSRFEG00010009650)	TMEM144 (ENSRFEG00010009696)	RXFP1 (ENSRFEG00010009881)	C4orf46 (ENSRFEG00010011084)	ETFDH (ENSRFEG00010011182)	ENSRFEG00010011368	FNIP2 (ENSRFEG00010011548)	C4orf45 (ENSRFEG00010011590)	RAPGEF2 (ENSRFEG00010011724)	PTK2B (ENSRFEG00010012994) #22	CHRNA2 (ENSRFEG00010013124) #23	ENSRFEG00010013238 #24	CLU (ENSRFEG00010013527) #25	SCARA3 (ENSRFEG00010013596) #26	CCDC25 (ENSRFEG00010013725) #27	ESCO2 (ENSRFEG00010013852) #28	PBK (ENSRFEG00010013905) #30	ENSRFEG00010013982	SCARA5 (ENSRFEG00010014042) #31	NUGGC (ENSRFEG00010014148) #32	ELP3 (ENSRFEG00010014240) #33	PNOC (ENSRFEG00010014558) #35	ZNF395 (ENSRFEG00010014637) #36	ENSRFEG00010014701 #37	FZD3 (ENSRFEG00010015031)
Megabat	MODERN SPECIES	231																PTK2B (ENSPVAG00000014422) #22	CHRNA2 (ENSPVAG00000014424) #23
Equus	ANCESTRAL SPECIES	24	ENSGT00940000154418.a.b	ENSGT00940000156208	ENSGT00990000214190	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Horse	MODERN SPECIES	11	DOCK5 (ENSECAG00000023607)	GNRH1 (ENSECAG00000010664) #7	KCTD9 (ENSECAG00000011535) #8	CDCA2 (ENSECAG00000013188) #9	ENSECAG00000048777	ENSECAG00000032941	ENSECAG00000051786	EBF2 (ENSECAG00000014179) #11	PPP2R2A (ENSECAG00000019205) #13	BNIP3L (ENSECAG00000005770) #15	PNMA2 (ENSECAG00000008517) #16	DPYSL2 (ENSECAG00000008662) #18	ADRA1A (ENSECAG00000015917) #19	STMN4 (ENSECAG00000044039) #20	TRIM35 (ENSECAG00000018548) #21	PTK2B (ENSECAG00000018924) #22	CHRNA2 (ENSECAG00000022609) #23	EPHX2 (ENSECAG00000023444) #24	GULO (ENSECAG00000003068)	CLU (ENSECAG00000007010) #25	SCARA3 (ENSECAG00000011350) #26	CCDC25 (ENSECAG00000011924) #27	ESCO2 (ENSECAG00000012899) #28	PBK (ENSECAG00000013223) #30	SCARA5 (ENSECAG00000013893) #31	NUGGC (ENSECAG00000014074) #32	ELP3 (ENSECAG00000014859) #33	PNOC (ENSECAG00000015761) #35	ZNF395 (ENSECAG00000015884) #36	FBXO16 (ENSECAG00000017125) #37	FZD3 (ENSECAG00000018292)
Donkey	MODERN SPECIES	22	NEFM (ENSEASG00005015031)	NEFL (ENSEASG00005015035)	ENSEASG00005032794	DOCK5 (ENSEASG00005015240)	GNRH1 (ENSEASG00005015619) #7	KCTD9 (ENSEASG00005015621) #8	CDCA2 (ENSEASG00005015623) #9	EBF2 (ENSEASG00005015624) #11	PNMA2 (ENSEASG00005035920) #16	ENSEASG00005015629 #13	BNIP3L (ENSEASG00005015633) #15	DPYSL2 (ENSEASG00005015636) #18	ADRA1A (ENSEASG00005015639) #19	STMN4 (ENSEASG00005015641) #20	TRIM35 (ENSEASG00005015643) #21	PTK2B (ENSEASG00005015727) #22	CHRNA2 (ENSEASG00005016279) #23	EPHX2 (ENSEASG00005016280) #24	ENSEASG00005016285	CLU (ENSEASG00005016294) #25	SCARA3 (ENSEASG00005016295) #26	CCDC25 (ENSEASG00005037176) #27	ESCO2 (ENSEASG00005016302) #28	PBK (ENSEASG00005016314) #30	SCARA5 (ENSEASG00005016320) #31	NUGGC (ENSEASG00005016323) #32	ELP3 (ENSEASG00005016324) #33	PNOC (ENSEASG00005016327) #35	ZNF395 (ENSEASG00005016329) #36	FBXO16 (ENSEASG00005016336) #37	FZD3 (ENSEASG00005016341)
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.q.a #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000158663	ENSGT00950000183082.b.a	ENSGT00940000159649	ENSGT00390000002288	ENSGT00940000158941	ENSGT00390000004928	ENSGT00390000014666.a	ENSGT00390000014618.b	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00390000015489.q.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000158663	ENSGT00950000183082.b.a	ENSGT00940000159649	ENSGT00390000002288	ENSGT00940000158941	ENSGT00390000004928	ENSGT00390000014666.a	ENSGT00390000014618.b	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00390000015489.q.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000158663	ENSGT00950000183082.b.a	ENSGT00940000159649	ENSGT00390000002288	ENSGT00940000158941	ENSGT00390000004928	ENSGT00390000014666.a	ENSGT00390000014618.b	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00390000015489.q.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
leopard	MODERN SPECIES	6	GOT1L1 (ENSPPRG00000008235)	ENSPPRG00000007377	BRF2 (ENSPPRG00000007107)	ADGRA2 (ENSPPRG00000006526)	PLPBP (ENSPPRG00000004434)	ERLIN2 (ENSPPRG00000004127)	ZNF703 (ENSPPRG00000003092)	KCNU1 (ENSPPRG00000001511)	ENSPPRG00000022282	UNC5D (ENSPPRG00000021671)	ENSPPRG00000016166	DUSP26 (ENSPPRG00000009759)	RNF122 (ENSPPRG00000009660)	STMN4 (ENSPPRG00000009329) #20	TRIM35 (ENSPPRG00000008006) #21	PTK2B (ENSPPRG00000007277) #22	CHRNA2 (ENSPPRG00000001723) #23	EPHX2 (ENSPPRG00000000549) #24	ENSPPRG00000022640	CLU (ENSPPRG00000023295) #25	SCARA3 (ENSPPRG00000022181) #26	CCDC25 (ENSPPRG00000020269) #27	ESCO2 (ENSPPRG00000017551) #28	PBK (ENSPPRG00000014626) #30	SCARA5 (ENSPPRG00000013681) #31	NUGGC (ENSPPRG00000012192) #32	ELP3 (ENSPPRG00000010984) #33	PNOC (ENSPPRG00000008661) #35	ZNF395 (ENSPPRG00000008303) #36	FBXO16 (ENSPPRG00000007009) #37	FZD3 (ENSPPRG00000006050)
lion	MODERN SPECIES	4	GOT1L1 (ENSPLOG00000004290)	RAB11FIP1 (ENSPLOG00000004304)	BRF2 (ENSPLOG00000004325)	ADGRA2 (ENSPLOG00000004358)	PLPBP (ENSPLOG00000004386)	ERLIN2 (ENSPLOG00000004395)	ZNF703 (ENSPLOG00000004412)	KCNU1 (ENSPLOG00000004463)	ENSPLOG00000004508	UNC5D (ENSPLOG00000004558)	ENSPLOG00000004619	DUSP26 (ENSPLOG00000004624)	RNF122 (ENSPLOG00000004628)	STMN4 (ENSPLOG00000004643) #20	TRIM35 (ENSPLOG00000004657) #21	PTK2B (ENSPLOG00000004681) #22	CHRNA2 (ENSPLOG00000004735) #23	EPHX2 (ENSPLOG00000004827) #24	ENSPLOG00000004928	CLU (ENSPLOG00000004952) #25	SCARA3 (ENSPLOG00000005033) #26	CCDC25 (ENSPLOG00000005060) #27	ESCO2 (ENSPLOG00000005098) #28	PBK (ENSPLOG00000005137) #30	NUGGC (ENSPLOG00000005183) #32	ELP3 (ENSPLOG00000000115) #33	ENSPLOG00000000137	PNOC (ENSPLOG00000000143) #35	ZNF395 (ENSPLOG00000000156) #36	FBXO16 (ENSPLOG00000000175) #37	FZD3 (ENSPLOG00000000194)
Tiger	MODERN SPECIES	550	ADRB3 (ENSPTIG00000016724)	GOT1L1 (ENSPTIG00000017432)	ENSPTIG00000018552	BRF2 (ENSPTIG00000019006)	ADGRA2 (ENSPTIG00000020237)	PLPBP (ENSPTIG00000007553)	ERLIN2 (ENSPTIG00000009337)	KCNU1 (ENSPTIG00000012045)	ENSPTIG00000006279	UNC5D (ENSPTIG00000015078)	ENSPTIG00000006393	DUSP26 (ENSPTIG00000000562)	RNF122 (ENSPTIG00000003477)	STMN4 (ENSPTIG00000006056) #20	TRIM35 (ENSPTIG00000008311) #21	PTK2B (ENSPTIG00000009077) #22	CHRNA2 (ENSPTIG00000018878) #23	EPHX2 (ENSPTIG00000006801) #24	ENSPTIG00000016376	CLU (ENSPTIG00000018269) #25	SCARA3 (ENSPTIG00000018843) #26	CCDC25 (ENSPTIG00000019790) #27	ESCO2 (ENSPTIG00000004922) #28	PBK (ENSPTIG00000006211) #30	SCARA5 (ENSPTIG00000007329) #31	NUGGC (ENSPTIG00000008187) #32	ELP3 (ENSPTIG00000010521) #33	ENSPTIG00000013248	PNOC (ENSPTIG00000013469) #35	ZNF395 (ENSPTIG00000014215) #36	FBXO16 (ENSPTIG00000015539) #37
Cat	MODERN SPECIES	235	GOT1L1 (ENSFCAG00000015538)	RAB11FIP1 (ENSFCAG00000028568)	BRF2 (ENSFCAG00000025130)	ADGRA2 (ENSFCAG00000015536)	PLPBP (ENSFCAG00000040705)	ERLIN2 (ENSFCAG00000015534)	ZNF703 (ENSFCAG00000043801)	KCNU1 (ENSFCAG00000018954)	ENSFCAG00000038093	UNC5D (ENSFCAG00000005095)	ENSFCAG00000034993	DUSP26 (ENSFCAG00000040176)	RNF122 (ENSFCAG00000025628)	STMN4 (ENSFCAG00000014418) #20	TRIM35 (ENSFCAG00000025046) #21	PTK2B (ENSFCAG00000014420) #22	CHRNA2 (ENSFCAG00000028158) #23	EPHX2 (ENSFCAG00000014422) #24	GULO (ENSFCAG00000023835)	CLU (ENSFCAG00000014423) #25	SCARA3 (ENSFCAG00000014424) #26	CCDC25 (ENSFCAG00000037880) #27	ESCO2 (ENSFCAG00000014426) #28	PBK (ENSFCAG00000014427) #30	SCARA5 (ENSFCAG00000031961) #31	NUGGC (ENSFCAG00000002892) #32	ELP3 (ENSFCAG00000025121) #33	ENSFCAG00000027676	PNOC (ENSFCAG00000023618) #35	ZNF395 (ENSFCAG00000030743) #36	FBXO16 (ENSFCAG00000019020) #37
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.q.a #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00390000013415.a.b.q.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Canidae	ANCESTRAL SPECIES	31	ENSGT00940000154418.a.b	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734.h	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.q.a #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.f #27	ENSGT00940000158598 #28	ENSGT00950000185466	ENSGT00720000108839.m #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734.h	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.q.a #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00980000202976	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380.f #27	ENSGT00940000158598 #28	ENSGT00720000108839.m #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021.f #37	ENSGT00940000156491.a
Dog	MODERN SPECIES	17	GNRH1 (ENSCAFG00845014221) #7	KCTD9 (ENSCAFG00845014154) #8	CDCA2 (ENSCAFG00845014066) #9	ENSCAFG00845014017	ENSCAFG00845013986	EBF2 (ENSCAFG00845013887) #11	PPP2R2A (ENSCAFG00845013645) #13	PPP2R2A (ENSCAFG00845013440) #15	PNMA2 (ENSCAFG00845013366) #16	ENSCAFG00845013305	DPYSL2 (ENSCAFG00845013099) #18	ADRA1A (ENSCAFG00845012931) #19	STMN4 (ENSCAFG00845012672) #20	ENSCAFG00845012522	TRIM35 (ENSCAFG00845012423) #21	PTK2B (ENSCAFG00845011700) #22	CHRNA2 (ENSCAFG00845011451) #23	EPHX2 (ENSCAFG00845011024) #24	ENSCAFG00845010841	CLU (ENSCAFG00845010565) #25	SCARA3 (ENSCAFG00845010317) #26	CCDC25 (ENSCAFG00845010181) #27	ESCO2 (ENSCAFG00845009996) #28	ENSCAFG00845009826 #30	SCARA5 (ENSCAFG00845009520) #31	NUGGC (ENSCAFG00845009140) #32	ELP3 (ENSCAFG00845008841) #33	ENSCAFG00845008692	PNOC (ENSCAFG00845008618) #35	ZNF395 (ENSCAFG00845008517) #36	FBXO16 (ENSCAFG00845022415) #37
Dingo	MODERN SPECIES	304	NEFM (ENSCAFG00020012742)	DOCK5 (ENSCAFG00020012698)	GNRH1 (ENSCAFG00020012686) #7	KCTD9 (ENSCAFG00020012683) #8	CDCA2 (ENSCAFG00020012668) #9	EBF2 (ENSCAFG00020012629) #11	PPP2R2A (ENSCAFG00020012619) #13	ENSCAFG00020012611 #15	PNMA2 (ENSCAFG00020012608) #16	ENSCAFG00020012600	DPYSL2 (ENSCAFG00020012592) #18	ADRA1A (ENSCAFG00020012587) #19	STMN4 (ENSCAFG00020012576) #20	ENSCAFG00020012574	TRIM35 (ENSCAFG00020012559) #21	PTK2B (ENSCAFG00020012533) #22	CHRNA2 (ENSCAFG00020012510) #23	EPHX2 (ENSCAFG00020012494) #24	ENSCAFG00020012482	CLU (ENSCAFG00020012476) #25	SCARA3 (ENSCAFG00020012469) #26	ENSCAFG00020012458 #27	ENSCAFG00020012453 #28	PBK (ENSCAFG00020012448) #30	SCARA5 (ENSCAFG00020012446) #31	ENSCAFG00020012433	ELP3 (ENSCAFG00020012431) #33	PNOC (ENSCAFG00020012417) #35	ZNF395 (ENSCAFG00020012411) #36	ENSCAFG00020012382 #37	FZD3 (ENSCAFG00020012376)
Red fox	MODERN SPECIES	67	ENSVVUG00000004182	GNRH1 (ENSVVUG00000004172) #7	KCTD9 (ENSVVUG00000004063) #8	ENSVVUG00000004038	ENSVVUG00000004033 #9	EBF2 (ENSVVUG00000003772) #11	PPP2R2A (ENSVVUG00000003745) #13	ENSVVUG00000003696 #15	PNMA2 (ENSVVUG00000003687) #16	ENSVVUG00000003679	DPYSL2 (ENSVVUG00000003636) #18	ENSVVUG00000003623	ADRA1A (ENSVVUG00000003602) #19	STMN4 (ENSVVUG00000003585) #20	TRIM35 (ENSVVUG00000003575) #21	PTK2B (ENSVVUG00000003546) #22	CHRNA2 (ENSVVUG00000003529) #23	EPHX2 (ENSVVUG00000003509) #24	ENSVVUG00000003499	CLU (ENSVVUG00000003495) #25	SCARA3 (ENSVVUG00000003490) #26	ENSVVUG00000003486 #27	ESCO2 (ENSVVUG00000003477) #28	ENSVVUG00000003476	PBK (ENSVVUG00000003472) #30	SCARA5 (ENSVVUG00000003462) #31	NUGGC (ENSVVUG00000003454) #32	ELP3 (ENSVVUG00000003271) #33	PNOC (ENSVVUG00000003259) #35	ZNF395 (ENSVVUG00000003247) #36	FBXO16 (ENSVVUG00000003232) #37
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b.q.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT00390000013415.a.b.q.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT00390000000378.d.b.db.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Mustelinae	ANCESTRAL SPECIES	82	ENSGT00390000015089	ENSGT00390000013722	ENSGT00940000158660	ENSGT00960000188301	ENSGT00940000162501	ENSGT00940000156733	ENSGT00940000156801	ENSGT00940000158403	ENSGT00390000013415.a.b.q.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT00390000000378.d.b.db.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
American mink	MODERN SPECIES	253														STMN4 (ENSNVIG00000007161) #20	TRIM35 (ENSNVIG00000007132) #21	PTK2B (ENSNVIG00000006919) #22	CHRNA2 (ENSNVIG00000006884) #23	EPHX2 (ENSNVIG00000006844) #24	ENSNVIG00000006816	CLU (ENSNVIG00000006796) #25	SCARA3 (ENSNVIG00000006779) #26	CCDC25 (ENSNVIG00000006767) #27	ESCO2 (ENSNVIG00000006733) #28	PBK (ENSNVIG00000006715) #30	SCARA5 (ENSNVIG00000006662) #31	NUGGC (ENSNVIG00000006619) #32	ELP3 (ENSNVIG00000006520) #33	PNOC (ENSNVIG00000006508) #35	ZN395 (ENSNVIG00000006450) #36	FBXO16 (ENSNVIG00000006404) #37	FZD3 (ENSNVIG00000006391)
Ferret	MODERN SPECIES	369					GAB1 (ENSMPUG00000000823)	USP38 (ENSMPUG00000000827)	ENSMPUG00000000829 #15	PNMA2 (ENSMPUG00000018482) #16	ENSMPUG00000018484	DPYSL2 (ENSMPUG00000000862) #18	ADRA1A (ENSMPUG00000000865) #19	ENSMPUG00000000868	STMN4 (ENSMPUG00000000871) #20	ENSMPUG00000000872	TRIM35 (ENSMPUG00000000873) #21	PTK2B (ENSMPUG00000000875) #22	CHRNA2 (ENSMPUG00000000876) #23	EPHX2 (ENSMPUG00000000882) #24	ENSMPUG00000000883	CLU (ENSMPUG00000000903) #25	SCARA3 (ENSMPUG00000000906) #26	CCDC25 (ENSMPUG00000000908) #27	ESCO2 (ENSMPUG00000000909) #28	PBK (ENSMPUG00000000915) #30	SCARA5 (ENSMPUG00000000953) #31	NUGGC (ENSMPUG00000000959) #32	ELP3 (ENSMPUG00000000966) #33	ENSMPUG00000000971	PNOC (ENSMPUG00000000972) #35	ZNF395 (ENSMPUG00000000974) #36	FBXO16 (ENSMPUG00000000979) #37
Ursidae	ANCESTRAL SPECIES	17													ENSGT00390000000378.d.b.db.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B.d #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Giant Panda	MODERN SPECIES	15	DMTN (ENSAMEG00000003459)	FGF17 (ENSAMEG00000003531)	NPM2 (ENSAMEG00000003542)	XPO7 (ENSAMEG00000003555)	DOK2 (ENSAMEG00000003671)	GFRA2 (ENSAMEG00000003691)	LZTS1 (ENSAMEG00000012664)	ATP6V1B2 (ENSAMEG00000012668)	SLC18A1 (ENSAMEG00000012721)	ENSAMEG00000000943	ENSAMEG00000005638	ENSAMEG00000031090	ENSAMEG00000026433	ENSAMEG00000000209 #20	ENSAMEG00000000207 #21	PTK2B (ENSAMEG00000000174) #22	CHRNA2 (ENSAMEG00000000168) #23	EPHX2 (ENSAMEG00000000158) #24	ENSAMEG00000000147	CLU (ENSAMEG00000000141) #25	SCARA3 (ENSAMEG00000000140) #26	CCDC25 (ENSAMEG00000000139) #27	ESCO2 (ENSAMEG00000000137) #28	PBK (ENSAMEG00000000135) #30	SCARA5 (ENSAMEG00000000133) #31	NUGGC (ENSAMEG00000000131) #32	ELP3 (ENSAMEG00000000124) #33	PNOC (ENSAMEG00000003325) #35	ZNF395 (ENSAMEG00000003309) #36	FBXO16 (ENSAMEG00000015968) #37	FZD3 (ENSAMEG00000015975)
Ursus	ANCESTRAL SPECIES	115													ENSGT00390000000378.d.b.db.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B.d #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Polar bear	MODERN SPECIES	269													ENSUMAG00000000826	STMN4 (ENSUMAG00000000750) #20	TRIM35 (ENSUMAG00000000742) #21	PTK2B (ENSUMAG00000000711) #22	CHRNA2 (ENSUMAG00000000675) #23	EPHX2 (ENSUMAG00000000481) #24	ENSUMAG00000000345	CLU (ENSUMAG00000000329) #25	SCARA3 (ENSUMAG00000000172) #26	CCDC25 (ENSUMAG00000000103) #27	ESCO2 (ENSUMAG00000022519) #28	PBK (ENSUMAG00000022515) #30	SCARA5 (ENSUMAG00000022508) #31	NUGGC (ENSUMAG00000022498) #32	ELP3 (ENSUMAG00000022494) #33	ZNF395 (ENSUMAG00000022490) #36	FBXO16 (ENSUMAG00000022474) #37	FZD3 (ENSUMAG00000022459)	EXTL3 (ENSUMAG00000022456)
American black bear	MODERN SPECIES	7496																PTK2B (ENSUAMG00000004407) #22	CHRNA2 (ENSUAMG00000004418) #23
Atlantogenata	ANCESTRAL SPECIES	23	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164057	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a
Afrotheria	ANCESTRAL SPECIES	19	ENSGT00940000156716	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Afrotheria_a	ANCESTRAL SPECIES	18	ENSGT00940000156716	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225 #7	ENSGT00940000154314 #8	ENSGT00940000154352.A #9	ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a #13	ENSGT00390000013415.a.b #15	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00940000156692
Elephant	MODERN SPECIES	225	ENSLAFG00000030752	ENSLAFG00000022323	ENSLAFG00000006017	NEFL (ENSLAFG00000026910)	DOCK5 (ENSLAFG00000003516)	GNRH1 (ENSLAFG00000003526) #7	KCTD9 (ENSLAFG00000003529) #8	CDCA2 (ENSLAFG00000003532) #9	EBF2 (ENSLAFG00000022465) #11	PPP2R2A (ENSLAFG00000021762) #13	BNIP3L (ENSLAFG00000018106) #15	DPYSL2 (ENSLAFG00000003305) #18	ADRA1A (ENSLAFG00000000055) #19	STMN4 (ENSLAFG00000022503) #20	TRIM35 (ENSLAFG00000009354) #21	PTK2B (ENSLAFG00000005217) #22	CHRNA2 (ENSLAFG00000026710) #23	EPHX2 (ENSLAFG00000005225) #24	ENSLAFG00000031573	CLU (ENSLAFG00000011466) #25	SCARA3 (ENSLAFG00000011471) #26	CCDC25 (ENSLAFG00000001228) #27	ESCO2 (ENSLAFG00000001229) #28	PBK (ENSLAFG00000001231) #30	SCARA5 (ENSLAFG00000016684) #31	ELP3 (ENSLAFG00000014499) #33	PNOC (ENSLAFG00000005798) #35	ZNF395 (ENSLAFG00000003717) #36	FBXO16 (ENSLAFG00000030630) #37	FZD3 (ENSLAFG00000011842)	EXTL3 (ENSLAFG00000006757)
Hyrax	MODERN SPECIES	1663																PTK2B (ENSPCAG00000000134) #22	ENSPCAG00000000158 #23
Tenrec	MODERN SPECIES	2059																PTK2B (ENSETEG00000000791) #22	CHRNA2 (ENSETEG00000000794) #23	EPHX2 (ENSETEG00000000796) #24
Xenarthra	ANCESTRAL SPECIES	559								ENSGT00950000182859.A.a.a.b #11	ENSGT00950000182864.a.b.a.hb #13	ENSGT00390000013415.a.b #15	ENSGT01030000234522.C.b.e.a.a.b #16	ENSGT01030000234527.A.a.b.a.a #18	ENSGT00940000159105 #19	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22
Armadillo	MODERN SPECIES	1764													ADRA1A (ENSDNOG00000006881) #19	STMN4 (ENSDNOG00000048041) #20	TRIM35 (ENSDNOG00000031618) #21	PTK2B (ENSDNOG00000007032) #22
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00530000063834.e.b	ENSGT00940000156975.u	ENSGT00940000153739.a.b	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459	ENSGT00390000016811	ENSGT00390000002143.b	ENSGT00940000157133	ENSGT00940000156549.a.a	ENSGT00390000016702	ENSGT00500000044959	ENSGT00950000183021.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000007636	ENSGT00940000161318	ENSGT00940000155596	ENSGT00940000156317	ENSGT00940000161102
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00530000063834.e.b	ENSGT00940000156975.u	ENSGT00940000153739.a.b	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459	ENSGT00390000016811	ENSGT00390000002143.b	ENSGT00940000157133	ENSGT00940000156549.a.a	ENSGT00390000016702	ENSGT00500000044959	ENSGT00950000183021.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614.e #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00390000007091 #32	ENSGT00390000007636	ENSGT00940000161318	ENSGT00940000155596	ENSGT00940000156317	ENSGT00940000161102
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00530000063834.e.b	ENSGT00940000156975.u	ENSGT00940000153739.a.b	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459	ENSGT00390000016811	ENSGT00390000002143.b	ENSGT00940000157133	ENSGT00940000156549.a.a	ENSGT00390000016702	ENSGT00500000044959	ENSGT00950000183021.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614.e #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164057	ENSGT00390000007091 #32	ENSGT00390000007636	ENSGT00940000161318.s	ENSGT00940000155596	ENSGT00940000156317
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00530000063834.e.b	ENSGT00940000156975.u	ENSGT00940000153739.a.b	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459	ENSGT00390000016811	ENSGT00390000002143.b	ENSGT00940000157133	ENSGT00940000156549.a.a	ENSGT00390000016702	ENSGT00500000044959	ENSGT00950000183021.b	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614.e #24	ENSGT00510000049722	ENSGT00530000063668.B #25	ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164057	ENSGT00390000007091 #32	ENSGT00390000007636	ENSGT00940000161318.s	ENSGT00940000155596	ENSGT00940000156317
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1150																ENSVURG00010014415 #22	ENSVURG00010014078 #23
Common wonbat	MODERN SPECIES	35																ENSVURG00010004303 #22	EPHX2 (ENSVURG00010004257) #24	ENSVURG00010004227	CLU (ENSVURG00010004214) #25	SCARA3 (ENSVURG00010004200) #26	CCDC25 (ENSVURG00010004173) #27	ESCO2 (ENSVURG00010004147) #28	PBK (ENSVURG00010004136) #30	NUGGC (ENSVURG00010004038) #32	KANSL3 (ENSVURG00010003969)	ENSVURG00010003915	LMAN2L (ENSVURG00010003890)	CNNM4 (ENSVURG00010003879)	ENSVURG00010003875	ANKRD23 (ENSVURG00010003814)	ANKRD39 (ENSVURG00010003806)
koala	MODERN SPECIES	15	KIF3C (ENSPCIG00000025229)	ASXL2 (ENSPCIG00000025232)	ENSPCIG00000025231	ENSPCIG00000025234	ENSPCIG00000025235	DNMT3A (ENSPCIG00000025236)	ENSPCIG00000025237	EFR3B (ENSPCIG00000025238)	DNAJC27 (ENSPCIG00000025239)	ADCY3 (ENSPCIG00000025240)	CENPO (ENSPCIG00000025241)	PTRHD1 (ENSPCIG00000025242)	NCOA1 (ENSPCIG00000025243)	STMN4 (ENSPCIG00000025244) #20	TRIM35 (ENSPCIG00000027513) #21	PTK2B (ENSPCIG00000009116) #22	CHRNA2 (ENSPCIG00000009140) #23	EPHX2 (ENSPCIG00000009228) #24	ENSPCIG00000009229	CLU (ENSPCIG00000009230) #25	SCARA3 (ENSPCIG00000035188) #26	CCDC25 (ENSPCIG00000009276) #27	ENSPCIG00000033186 #27	ESCO2 (ENSPCIG00000033776) #28	PBK (ENSPCIG00000009234) #30	SCARA5 (ENSPCIG00000009236) #31	ENSPCIG00000009241	KANSL3 (ENSPCIG00000009247)	ENSPCIG00000009255	LMAN2L (ENSPCIG00000009266)	CNNM4 (ENSPCIG00000009268)
Wallaby	MODERN SPECIES	2933																PTK2B (ENSMEUG00000004521) #22	CHRNA2 (ENSMEUG00000004558) #23
Tasmanian devil	MODERN SPECIES	1	RAB10 (ENSSHAG00000032249)	ENSSHAG00000030526	KIF3C (ENSSHAG00000020830)	ASXL2 (ENSSHAG00000012066)	ENSSHAG00000009563	DNMT3A (ENSSHAG00000007509)	ENSSHAG00000024476	EFR3B (ENSSHAG00000002481)	DNAJC27 (ENSSHAG00000024931)	ADCY3 (ENSSHAG00000006048)	CENPO (ENSSHAG00000005861)	PTRHD1 (ENSSHAG00000005774)	ENSSHAG00000003234	ENSSHAG00000007155 #20	ENSSHAG00000023575 #21	PTK2B (ENSSHAG00000029715) #22	CHRNA2 (ENSSHAG00000020533) #23	ENSSHAG00000002604 #24	ENSSHAG00000022526 #24	ENSSHAG00000006234	CLU (ENSSHAG00000028360) #25	SCARA3 (ENSSHAG00000018558) #26	CCDC25 (ENSSHAG00000018434) #27	ESCO2 (ENSSHAG00000018411) #28	PBK (ENSSHAG00000018381) #30	SCARA5 (ENSSHAG00000018224) #31	ENSSHAG00000018088 #32	ENSSHAG00000017986	ENSSHAG00000017894	LMAN2L (ENSSHAG00000017859)	CNNM4 (ENSSHAG00000021307)
Opossum	MODERN SPECIES		KIF3C (ENSMODG00000015824)	ASXL2 (ENSMODG00000015832)	ENSMODG00000015846	DNMT3A (ENSMODG00000015850)	POMC (ENSMODG00000015853)	EFR3B (ENSMODG00000015857)	ENSMODG00000051458	DNAJC27 (ENSMODG00000015869)	ADCY3 (ENSMODG00000015887)	CENPO (ENSMODG00000015893)	PTRHD1 (ENSMODG00000015895)	ENSMODG00000023230	NCOA1 (ENSMODG00000015907)	STMN4 (ENSMODG00000015911) #20	TRIM35 (ENSMODG00000015914) #21	PTK2B (ENSMODG00000015932) #22	CHRNA2 (ENSMODG00000015940) #23	ENSMODG00000015951	EPHX2 (ENSMODG00000015948) #24	ENSMODG00000049961	ENSMODG00000015957	ENSMODG00000015960 #25	SCARA3 (ENSMODG00000015965) #26	ENSMODG00000037017	ENSMODG00000015984	CCDC25 (ENSMODG00000015976) #27	SCARA5 (ENSMODG00000015990) #31	NUGGC (ENSMODG00000015992) #32	KANSL3 (ENSMODG00000015996)	ENSMODG00000016016	LMAN2L (ENSMODG00000016022)
Platypus	MODERN SPECIES	85	FBXO16 (ENSOANG00000005008) #37	ELP3 (ENSOANG00000046183) #33	ENSOANG00000049370 #35	ENSOANG00000049379 #36	NCOA1 (ENSOANG00000004546)	PTRHD1 (ENSOANG00000043793)	ENSOANG00000036561	ENSOANG00000031519	ENSOANG00000050218	DNAJC27 (ENSOANG00000050168)	EFR3B (ENSOANG00000043503)	ENSOANG00000041348	ENSOANG00000050130	ENSOANG00000011270 #20	TRIM35 (ENSOANG00000011269) #21	PTK2B (ENSOANG00000007152) #22	CHRNA2 (ENSOANG00000041498) #23	EPHX2 (ENSOANG00000010887) #24
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634
Lepidosauria	ANCESTRAL SPECIES	85	ENSGT00940000156491.a	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Episquamata	ANCESTRAL SPECIES		ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00950000183074.B.a.a #31	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00940000156692	ENSGT00390000001445
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000162770.o	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00940000156692
Elapidae	ANCESTRAL SPECIES		ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT01030000234597.a.b.a #20	ENSGT00390000016811	ENSGT00390000002143.b	ENSGT00950000183074.B.a.a #31	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000162770.o	ENSGT01100000263521.a.a.a.b.a.b.a.c.b	ENSGT00940000157136 #36	ENSGT00390000012138.a.a.e.a	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a
Elapidae_a	ANCESTRAL SPECIES	59	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00990000211035	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT01030000234597.a.b.a #20	ENSGT00390000002143.b	ENSGT00950000183074.B.a.a #31	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000162770.o	ENSGT01100000263521.a.a.a.b.a.b.a.c.b	ENSGT00940000157136 #36	ENSGT00390000012138.a.a.e.a	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a
Acanthophiinae	ANCESTRAL SPECIES	11	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT01030000234597.a.b.a #20	ENSGT00390000002143.b	ENSGT00950000183074.B.a.a #31	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000162770.o	ENSGT01100000263521.a.a.a.b.a.b.a.c.b	ENSGT00940000157136 #36	ENSGT00390000012138.a.a.e.a	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a
Eastern brown snake	MODERN SPECIES	80									EFR3B (ENSPTXG00000015303)	SCARA5 (ENSPTXG00000015301) #31	ENSPTXG00000015299	OTOF (ENSPTXG00000015144)	FAM166C (ENSPTXG00000015142)	CIB4 (ENSPTXG00000015140)	KCNK3 (ENSPTXG00000015137)	PTK2B (ENSPTXG00000015131) #22	CHRNA2 (ENSPTXG00000015080) #23	EPHX2 (ENSPTXG00000015079) #24	ENSPTXG00000015077	FBXO16 (ENSPTXG00000015076) #37	FZD3 (ENSPTXG00000015075)	ELP3 (ENSPTXG00000015074) #33	ENSPTXG00000015072 #35	ENSPTXG00000015070	ZNF395 (ENSPTXG00000015067) #36	ENSPTXG00000015064	NCOA1 (ENSPTXG00000015051)	PTRHD1 (ENSPTXG00000015040)	CENPO (ENSPTXG00000015036)	ADCY3 (ENSPTXG00000014405)	DNAJC27 (ENSPTXG00000014404)
Mainland tiger snake	MODERN SPECIES	38	ENSNSUG00000005331	CCDC25 (ENSNSUG00000005321) #27	SCARA3 (ENSNSUG00000005320) #26	CLU (ENSNSUG00000005317) #25	SLC35F6 (ENSNSUG00000005316)	ENSNSUG00000005315	STMN4 (ENSNSUG00000005301) #20	POMC (ENSNSUG00000005300)	EFR3B (ENSNSUG00000005297)	SCARA5 (ENSNSUG00000005259) #31	DRC1 (ENSNSUG00000005215)	OTOF (ENSNSUG00000005171)	FAM166C (ENSNSUG00000005166)	CIB4 (ENSNSUG00000005164)	KCNK3 (ENSNSUG00000005163)	PTK2B (ENSNSUG00000005160) #22	CHRNA2 (ENSNSUG00000005137) #23	EPHX2 (ENSNSUG00000004993) #24	ENSNSUG00000004979	FBXO16 (ENSNSUG00000004978) #37	FZD3 (ENSNSUG00000004972)	ELP3 (ENSNSUG00000004953) #33	ENSNSUG00000004947 #35	ENSNSUG00000004946	ENSNSUG00000004945	ZNF395 (ENSNSUG00000004943) #36	ENSNSUG00000004932	NCOA1 (ENSNSUG00000004847)	PTRHD1 (ENSNSUG00000004846)	CENPO (ENSNSUG00000004845)	ADCY3 (ENSNSUG00000004843)
Indian cobra	MODERN SPECIES		GAREM2 (ENSNNAG00000000215)	HADHA (ENSNNAG00000000220)	HADHB (ENSNNAG00000000228)	SELENOI (ENSNNAG00000000233)	SCARA3 (ENSNNAG00000000236) #26	CLU (ENSNNAG00000000239) #25	SLC35F6 (ENSNNAG00000000242)	STMN4 (ENSNNAG00000000248) #20	ENSNNAG00000000253	EFR3B (ENSNNAG00000000274)	SCARA5 (ENSNNAG00000000358) #31	OTOF (ENSNNAG00000000403)	FAM166C (ENSNNAG00000000454)	CIB4 (ENSNNAG00000000465)	KCNK3 (ENSNNAG00000000490)	PTK2B (ENSNNAG00000000522) #22	CHRNA2 (ENSNNAG00000000635) #23	EPHX2 (ENSNNAG00000000770) #24	ENSNNAG00000000808	FBXO16 (ENSNNAG00000000819) #37	FZD3 (ENSNNAG00000000829)	ELP3 (ENSNNAG00000000861) #33	ENSNNAG00000000913 #35	ZNF395 (ENSNNAG00000000935) #36	ENSNNAG00000000970	ENSNNAG00000000986	NCOA1 (ENSNNAG00000001015)	PTRHD1 (ENSNNAG00000001090)	CENPO (ENSNNAG00000001109)	ADCY3 (ENSNNAG00000001123)	DNAJC27 (ENSNNAG00000001146)
Lizard	MODERN SPECIES	1301																ENSACAG00000002392 #22	ENSACAG00000002388 #23
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00950000183074.B.a.a #31	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000159021 #37	ENSGT00940000156491.a	ENSGT00390000013141 #33	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00940000156692	ENSGT00390000001445
Argentine black and white tegu	MODERN SPECIES	68	EMILIN1 (ENSSMRG00000013046)	ENSSMRG00000013045	ENSSMRG00000013044	KHK (ENSSMRG00000013043)	CGREF1 (ENSSMRG00000013042)	ABHD1 (ENSSMRG00000013041)	PREB (ENSSMRG00000013040)	SLC5A6 (ENSSMRG00000013039)	ATRAID (ENSSMRG00000013037)	ENSSMRG00000012982	ENSSMRG00000012980	EFR3B (ENSSMRG00000012976)	POMC (ENSSMRG00000012975)	STMN4 (ENSSMRG00000012973) #20	TRIM35 (ENSSMRG00000012972) #21	PTK2B (ENSSMRG00000012343) #22	CHRNA2 (ENSSMRG00000012342) #23	EPHX2 (ENSSMRG00000012338) #24	ENSSMRG00000012337	FBXO16 (ENSSMRG00000012336) #37	FZD3 (ENSSMRG00000012335)	ELP3 (ENSSMRG00000012333) #33	ENSSMRG00000012332 #35	ZNF395 (ENSSMRG00000012322) #36	NCOA1 (ENSSMRG00000012318)	PTRHD1 (ENSSMRG00000012312)	CENPO (ENSSMRG00000012311)	ADCY3 (ENSSMRG00000012310)	DNAJC27 (ENSSMRG00000012297)	EXTL3 (ENSSMRG00000012294)	INTS9 (ENSSMRG00000012290)
Common wall lizard	MODERN SPECIES	11	SCARA3 (ENSPMRG00000000237) #26	CLU (ENSPMRG00000003336) #25	SLC35F6 (ENSPMRG00000003328)	KCNK3 (ENSPMRG00000003323)	CIB4 (ENSPMRG00000003309)	FAM166C (ENSPMRG00000003296)	OTOF (ENSPMRG00000003190)	DRC1 (ENSPMRG00000003155)	SCARA5 (ENSPMRG00000003140) #31	ENSPMRG00000003130	EFR3B (ENSPMRG00000002977)	POMC (ENSPMRG00000002939)	ENSPMRG00000002931	TRIM35 (ENSPMRG00000002924) #21	STMN4 (ENSPMRG00000002911) #20	PTK2B (ENSPMRG00000002828) #22	CHRNA2 (ENSPMRG00000002766) #23	EPHX2 (ENSPMRG00000002740) #24	ENSPMRG00000002723	FBXO16 (ENSPMRG00000002709) #37	FZD3 (ENSPMRG00000002701)	ELP3 (ENSPMRG00000002594) #33	PNOC (ENSPMRG00000002572) #35	ZNF395 (ENSPMRG00000002564) #36	NCOA1 (ENSPMRG00000002517)	PTRHD1 (ENSPMRG00000002495)	CENPO (ENSPMRG00000002488)	ENSPMRG00000002481	ADCY3 (ENSPMRG00000002451)	DNAJC27 (ENSPMRG00000002434)	ENSPMRG00000002425
tuatara	MODERN SPECIES	725													STMN4 (ENSSPUG00000009157) #20	ENSSPUG00000009389 #21	ENSSPUG00000009430 #21	PTK2B (ENSSPUG00000009590) #22	ENSSPUG00000009688 #23	ENSSPUG00000009697 #23	EPHX2 (ENSSPUG00000009710) #24	ENSSPUG00000009741	ENSSPUG00000009778
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634
Aves	ANCESTRAL SPECIES	38	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C
Neognathae	DUPLICATION
Neognathae	DUPLICATION
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000156491.a	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000153804.A	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b
Passeriformes	ANCESTRAL SPECIES	66								ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Passeriformes_d	ANCESTRAL SPECIES	63								ENSGT00940000158238 #26	ENSGT00390000004380 #27	ENSGT00940000158598 #28	ENSGT00720000108839 #30	ENSGT00950000183074.B.a.a #31	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Flycatcher	MODERN SPECIES	281							ENSFALG00000003597 #26	CCDC25 (ENSFALG00000026574) #27	ENSFALG00000023163 #28	PBK (ENSFALG00000003610) #30	SCARA5 (ENSFALG00000003615) #31	ENSFALG00000026236	ENSFALG00000027925	STMN4 (ENSFALG00000003627) #20	TRIM35 (ENSFALG00000003643) #21	PTK2B (ENSFALG00000003688) #22	CHRNA2 (ENSFALG00000003731) #23	EPHX2 (ENSFALG00000003744) #24	ENSFALG00000003766
Passeriformes_g	ANCESTRAL SPECIES	71							ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00530000063668.B #25	ENSGT01000000219003	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868.c #21	ENSGT00940000153804.A	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Passeroidea	ANCESTRAL SPECIES	74							ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00530000063668.B #25	ENSGT01000000219003	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868.c #21	ENSGT00940000153804.A	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Zebra finch	MODERN SPECIES	23	ENSTGUG00000019284 #30	SCARA5 (ENSTGUG00000022151) #31	ENSTGUG00000024251	ENSTGUG00000021006	ENSTGUG00000022181	ENSTGUG00000028069	ENSTGUG00000014407	ENSTGUG00000019652	ENSTGUG00000020253	ENSTGUG00000014477	ENSTGUG00000029360	ENSTGUG00000028224	ENSTGUG00000018963	ENSTGUG00000025070	ENSTGUG00000024576	ENSTGUG00000027137 #22	ENSTGUG00000024393 #23	ENSTGUG00000027496 #24	ENSTGUG00000029004	ENSTGUG00000026856	ENSTGUG00000021161	ENSTGUG00000015724	ENSTGUG00000019591	ENSTGUG00000029279	ENSTGUG00000014433	ENSTGUG00000022620	ENSTGUG00000027186	ENSTGUG00000028646	ENSTGUG00000021481	ENSTGUG00000023276	ENSTGUG00000021185
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Duck	MODERN SPECIES	1562																ENSAPLG00000009501 #22	ENSAPLG00000021656 #22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000157269.a.a.c.b #22
Zebra finch	MODERN SPECIES	23	ENSTGUG00000022181	ENSTGUG00000021006	ENSTGUG00000024251	SCARA5 (ENSTGUG00000022151) #31	ENSTGUG00000019284 #30	ENSTGUG00000021901 #28	ENSTGUG00000027492	CLU (ENSTGUG00000028547) #25	ENSTGUG00000023570	KCNK3 (ENSTGUG00000026168)	ENSTGUG00000028914	ENSTGUG00000026507 #20	TRIM35 (ENSTGUG00000020309) #21	DRC1 (ENSTGUG00000022350)	ENSTGUG00000021787	ENSTGUG00000027945 #22	ENSTGUG00000029589	ENSTGUG00000021674 #23	ENSTGUG00000029103 #24	ENSTGUG00000024397	POMC (ENSTGUG00000017017)	ADCY3 (ENSTGUG00000023950)	ENSTGUG00000023099	ENSTGUG00000022216	ENSTGUG00000015169	ENSTGUG00000027387	ENSTGUG00000026432
Neognathae	ANCESTRAL SPECIES	2	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a.c.a #22	ENSGT00940000153804.A	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000153804.A	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00950000185082	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C
Golden eagle	MODERN SPECIES	6	FBXO16 (ENSACCG00020006672) #37	ELP3 (ENSACCG00020006644) #33	ENSACCG00020006625	ENSACCG00020006612 #35	ZNF395 (ENSACCG00020006598) #36	NCOA1 (ENSACCG00020006560)	PTRHD1 (ENSACCG00020006527)	CENPO (ENSACCG00020006512)	ADCY3 (ENSACCG00020006490)	DNAJC27 (ENSACCG00020006474)	EFR3B (ENSACCG00020006420)	POMC (ENSACCG00020006401)	STMN4 (ENSACCG00020006389) #20	TRIM35 (ENSACCG00020006372) #21	DRC1 (ENSACCG00020006349)	PTK2B (ENSACCG00020006294) #22	CHRNA2 (ENSACCG00020006240) #23	EPHX2 (ENSACCG00020006227) #24	ENSACCG00020006171	SCARA5 (ENSACCG00020006154) #31	PBK (ENSACCG00020006136) #30	ESCO2 (ENSACCG00020006123) #28	CCDC25 (ENSACCG00020006104) #27	SCARA3 (ENSACCG00020006092) #26	ENSACCG00020006081	CLU (ENSACCG00020006066) #25	SLC35F6 (ENSACCG00020006053)	KCNK3 (ENSACCG00020006041)	FAM166C (ENSACCG00020006030)	OTOF (ENSACCG00020005945)	SELENOI (ENSACCG00020005836)
Kakapo	MODERN SPECIES	23	ELP3 (ENSSHBG00005010202) #33	ENSSHBG00005010236	PNOC (ENSSHBG00005010253) #35	ZNF395 (ENSSHBG00005010272) #36	ENSSHBG00005010296	NCOA1 (ENSSHBG00005010354)	PTRHD1 (ENSSHBG00005010471)	CENPO (ENSSHBG00005010503)	ADCY3 (ENSSHBG00005010549)	DNAJC27 (ENSSHBG00005010616)	EFR3B (ENSSHBG00005010666)	POMC (ENSSHBG00005010726)	STMN4 (ENSSHBG00005010745) #20	TRIM35 (ENSSHBG00005010787) #21	DRC1 (ENSSHBG00005010810)	PTK2B (ENSSHBG00005010925) #22	CHRNA2 (ENSSHBG00005011161) #23	EPHX2 (ENSSHBG00005011215) #24	ENSSHBG00005011243	SCARA5 (ENSSHBG00005011297) #31	PBK (ENSSHBG00005011416) #30	ENSSHBG00005011440 #28	ENSSHBG00005011457	CCDC25 (ENSSHBG00005011479) #27	SCARA3 (ENSSHBG00005011496) #26	ENSSHBG00005011516	CLU (ENSSHBG00005011529) #25	SLC35F6 (ENSSHBG00005011551)	KCNK3 (ENSSHBG00005011570)	FAM166C (ENSSHBG00005011584)	OTOF (ENSSHBG00005011947)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b ##18	ENSGT00940000155459	ENSGT00940000153897.b.a.b	ENSGT00940000164272	ENSGT00520000055578.a.b	ENSGT00940000153739.a.b	ENSGT00940000177261	ENSGT00940000156975.u	ENSGT00530000063834.e.b	ENSGT00940000154677	ENSGT01030000234626.A.b	ENSGT00390000008161.b	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b
Phasianidae	ANCESTRAL SPECIES	28	ENSGT00940000161480	ENSGT00390000018632	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b ##18	ENSGT00940000155459	ENSGT00940000153897.b.a.b	ENSGT00940000164272	ENSGT00520000055578.a.b	ENSGT00940000153739.a.b	ENSGT00940000177261	ENSGT00940000156975.u	ENSGT00530000063834.e.b	ENSGT00940000154677	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b
Phasianidae_b	ANCESTRAL SPECIES	29	ENSGT00940000161480	ENSGT00390000018632	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b ##18	ENSGT00940000155459	ENSGT00940000153897.b.a.b	ENSGT00940000164272	ENSGT00520000055578.a.b	ENSGT00940000153739.a.b	ENSGT00940000177261	ENSGT00940000156975.u	ENSGT00530000063834.e.b	ENSGT00940000154677	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091 #32	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT01100000263560.b.b	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b
Chicken	MODERN SPECIES	22	GTF3C2 (ENSGALG00010009351)	MAPRE3 (ENSGALG00010009392)	DPYSL5 (ENSGALG00010009437) ##18	DNMT3A (ENSGALG00010009469)	ENSGALG00010011908	ENSGALG00010009526	ASXL2 (ENSGALG00010009383)	KIF3C (ENSGALG00010009530)	ENSGALG00010009537	RAB10 (ENSGALG00010009540)	GAREM2 (ENSGALG00010009546)	HADHA (ENSGALG00010009551)	HADHB (ENSGALG00010009562)	ENSGALG00010009615	SELENOI (ENSGALG00010009876)	PTK2B (ENSGALG00010009972) #22	CHRNA2 (ENSGALG00010010053) #23	EPHX2 (ENSGALG00010010136) #24	ENSGALG00010011927	ENSGALG00010010153	NUGGC (ENSGALG00010010171)	SCARA5 (ENSGALG00010010206) #31	PBK (ENSGALG00010010218) #30	ESCO2 (ENSGALG00010010243) #28	CCDC25 (ENSGALG00010010284) #27	SCARA3 (ENSGALG00010010337) #26	ENSGALG00010010317	CLU (ENSGALG00010010366) #25	SLC35F6 (ENSGALG00010010379)	ENSGALG00010010387	KCNK3 (ENSGALG00010010390)
Turkey	MODERN SPECIES	11	OST4 (ENSMGAG00000021231)	AGBL5 (ENSMGAG00000014071)	TMEM214 (ENSMGAG00000014954)	DPYSL5 (ENSMGAG00000008087) ##18	DNMT3A (ENSMGAG00000014078)	ENSMGAG00000014080	ASXL2 (ENSMGAG00000014086)	ENSMGAG00000019139	RAB10 (ENSMGAG00000014088)	GAREM2 (ENSMGAG00000022446)	HADHA (ENSMGAG00000014090)	HADHB (ENSMGAG00000014094)	ENSMGAG00000015651	ENSMGAG00000022025	SELENOI (ENSMGAG00000014102)	PTK2B (ENSMGAG00000014100) #22	ENSMGAG00000014105 #23	EPHX2 (ENSMGAG00000014107) #24	ENSMGAG00000014114	NUGGC (ENSMGAG00000020967) #32	SCARA5 (ENSMGAG00000014119) #31	PBK (ENSMGAG00000014121) #30	ESCO2 (ENSMGAG00000014122) #28	CCDC25 (ENSMGAG00000014123) #27	SCARA3 (ENSMGAG00000014125) #26	ENSMGAG00000022703	CLU (ENSMGAG00000014126) #25	SLC35F6 (ENSMGAG00000014128)	KCNK3 (ENSMGAG00000017098)	FAM166C (ENSMGAG00000020358)	OTOF (ENSMGAG00000014133)
Japanese quail	MODERN SPECIES	21	MAPRE3 (ENSCJPG00005012216)	DPYSL5 (ENSCJPG00005012217) ##18	ENSCJPG00005012251	DNMT3A (ENSCJPG00005012252)	ENSCJPG00005012492	ASXL2 (ENSCJPG00005012928)	KIF3C (ENSCJPG00005012932)	ENSCJPG00005012964	RAB10 (ENSCJPG00005012965)	GAREM2 (ENSCJPG00005012966)	HADHA (ENSCJPG00005012967)	HADHB (ENSCJPG00005012968)	ENSCJPG00005012969	ENSCJPG00005012970	SELENOI (ENSCJPG00005012971)	PTK2B (ENSCJPG00005012972) #22	CHRNA2 (ENSCJPG00005012973) #23	EPHX2 (ENSCJPG00005012975) #24	ENSCJPG00005012976	ENSCJPG00005012977	SCARA5 (ENSCJPG00005012978) #31	PBK (ENSCJPG00005012979) #30	ESCO2 (ENSCJPG00005012980) #28	CCDC25 (ENSCJPG00005012981) #27	SCARA3 (ENSCJPG00005012982) #26	ENSCJPG00005012983	CLU (ENSCJPG00005012984) #25	SLC35F6 (ENSCJPG00005012985)	KCNK3 (ENSCJPG00005012986)	OTOF (ENSCJPG00005012987)	DRC1 (ENSCJPG00005012988)
Anatidae	ANCESTRAL SPECIES	96					ENSGT01030000234527.A.a.a.b ##18	ENSGT00940000155459	ENSGT00940000153897.b.a.b	ENSGT00940000164272	ENSGT00520000055578.a.b	ENSGT00940000153739.a.b	ENSGT00940000156975.u	ENSGT00530000063834.e.b	ENSGT00940000154677	ENSGT01030000234626.A.b	ENSGT00390000008161.b	ENSGT00940000157269.a.a.d #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b
Duck	MODERN SPECIES	1562															ENSAPLG00000009501 #22	ENSAPLG00000021656 #22
Pink-footed goose	MODERN SPECIES	469														SELENOI (ENSABRG00000003388)	ENSABRG00000003382	PTK2B (ENSABRG00000001681) #22	CHRNA2 (ENSABRG00000001378) #23	EPHX2 (ENSABRG00000001343) #24	ENSABRG00000001321	ENSABRG00000001262	ENSABRG00000001229
African ostrich	MODERN SPECIES	259														STMN4 (ENSSCUG00000004981) #20	DRC1 (ENSSCUG00000004983)	PTK2B (ENSSCUG00000005000) #22	CHRNA2 (ENSSCUG00000005028) #23	EPHX2 (ENSSCUG00000005033) #24	ENSSCUG00000005034	SCARA5 (ENSSCUG00000005036) #31	PBK (ENSSCUG00000005037) #30	ESCO2 (ENSSCUG00000005038) #28	CCDC25 (ENSSCUG00000005040) #27	SCARA3 (ENSSCUG00000005042) #26	ENSSCUG00000005044	ENSSCUG00000005045	ENSSCUG00000005047
Australian saltwater crocodile	MODERN SPECIES	38	EIF2B4 (ENSCPRG00005004193)	ENSCPRG00005004186	GTF3C2 (ENSCPRG00005004180)	SLC30A3 (ENSCPRG00005004176)	ENSCPRG00005004078	CAD (ENSCPRG00005003406)	MPV17 (ENSCPRG00005003328)	UCN (ENSCPRG00005003322)	TRIM54 (ENSCPRG00005003316)	ENSCPRG00005003314	GAREM2 (ENSCPRG00005003295)	HADHA (ENSCPRG00005003283)	HADHB (ENSCPRG00005003272)	ENSCPRG00005003270	SELENOI (ENSCPRG00005003267)	PTK2B (ENSCPRG00005003239) #22	CHRNA2 (ENSCPRG00005003216) #23	EPHX2 (ENSCPRG00005003158) #24	ENSCPRG00005003140	CCDC25 (ENSCPRG00005003117) #27	SCARA3 (ENSCPRG00005003111) #26	CLU (ENSCPRG00005003108) #25	SLC35F6 (ENSCPRG00005003101)	KCNK3 (ENSCPRG00005003098)	CIB4 (ENSCPRG00005003088)	FAM166C (ENSCPRG00005003082)	OTOF (ENSCPRG00005002907)	DRC1 (ENSCPRG00005002888)	ENSCPRG00005002882	ENSCPRG00005002876	ENSCPRG00005002868
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00390000008161.b
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000162770.o	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00390000008161.b
Emydidae	ANCESTRAL SPECIES	62	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000162770.o	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
painted turtle	MODERN SPECIES	873		ELP3 (ENSCPBG00000022241) #33	ENSCPBG00000022243	PNOC (ENSCPBG00000022245) #35	ENSCPBG00000022249	ZNF395 (ENSCPBG00000022254) #36	NCOA1 (ENSCPBG00000022268)	PTRHD1 (ENSCPBG00000022276)	CENPO (ENSCPBG00000022278)	ADCY3 (ENSCPBG00000022281)	DNAJC27 (ENSCPBG00000022284)	EFR3B (ENSCPBG00000022285)	POMC (ENSCPBG00000022290)	STMN4 (ENSCPBG00000022294) #20	TRIM35 (ENSCPBG00000022297) #21	PTK2B (ENSCPBG00000022304) #22	ENSCPBG00000022313	CHRNA2 (ENSCPBG00000022315) #23	ENSCPBG00000022322 #24	ENSCPBG00000022327
Three-toed box turtle	MODERN SPECIES	103	ELP3 (ENSTMTG00000011600) #33	ENSTMTG00000011582	ENSTMTG00000011575 #35	ENSTMTG00000011561	ZNF395 (ENSTMTG00000011534) #36	ENSTMTG00000011528	NCOA1 (ENSTMTG00000011440)	PTRHD1 (ENSTMTG00000011426)	CENPO (ENSTMTG00000011356)	ADCY3 (ENSTMTG00000010110)	DNAJC27 (ENSTMTG00000009996)	EFR3B (ENSTMTG00000009799)	POMC (ENSTMTG00000009765)	STMN4 (ENSTMTG00000009753) #20	TRIM35 (ENSTMTG00000009732) #21	PTK2B (ENSTMTG00000009616) #22	CHRNA2 (ENSTMTG00000009578) #23
Testudinidae	ANCESTRAL SPECIES	44	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000162770.o	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT01030000234597.a.b.a #20	ENSGT00940000160868 #21	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614.d #24	ENSGT00940000158614.c #24	ENSGT00510000049722	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005005263	ENSGEVG00005005155 #35	ENSGEVG00005005109	ZNF395 (ENSGEVG00005005081) #36	ENSGEVG00005005060	ENSGEVG00005005032	NCOA1 (ENSGEVG00005004972)	PTRHD1 (ENSGEVG00005004942)	CENPO (ENSGEVG00005004917)	ADCY3 (ENSGEVG00005004679)	DNAJC27 (ENSGEVG00005004577)	EFR3B (ENSGEVG00005004445)	POMC (ENSGEVG00005004412)	STMN4 (ENSGEVG00005004316) #20	TRIM35 (ENSGEVG00005009862) #21	PTK2B (ENSGEVG00005009625) #22	CHRNA2 (ENSGEVG00005009506) #23	ENSGEVG00005009424 #24	ENSGEVG00005009312 #24	ENSGEVG00005009192	SCARA5 (ENSGEVG00005008955) #31	PBK (ENSGEVG00005008894) #30	ESCO2 (ENSGEVG00005008858) #28	CCDC25 (ENSGEVG00005008803) #27	SCARA3 (ENSGEVG00005008756) #26	CLU (ENSGEVG00005008738) #25	SLC35F6 (ENSGEVG00005008714)	KCNK3 (ENSGEVG00005008695)	FAM166C (ENSGEVG00005008643)	OTOF (ENSGEVG00005008198)	DRC1 (ENSGEVG00005007884)
Abingdon island giant tortoise	MODERN SPECIES	1525				ENSCABG00000014769 #35	ENSCABG00000014770	ZNF395 (ENSCABG00000014771) #36	NCOA1 (ENSCABG00000014776)	PTRHD1 (ENSCABG00000014778)	CENPO (ENSCABG00000014779)	ADCY3 (ENSCABG00000014781)	DNAJC27 (ENSCABG00000014785)	EFR3B (ENSCABG00000014787)	POMC (ENSCABG00000014812)	STMN4 (ENSCABG00000014815) #20	TRIM35 (ENSCABG00000014837) #21	PTK2B (ENSCABG00000014874) #22	CHRNA2 (ENSCABG00000015730) #23
Chinese turtle	MODERN SPECIES	596	ELP3 (ENSPSIG00000018220) #33	FZD3 (ENSPSIG00000018263)	FBXO16 (ENSPSIG00000018267) #37	ENSPSIG00000018269	ENSPSIG00000018272 #35	ZNF395 (ENSPSIG00000006850) #36	NCOA1 (ENSPSIG00000007514)	CENPO (ENSPSIG00000009215)	ADCY3 (ENSPSIG00000009379)	DNAJC27 (ENSPSIG00000009930)	EFR3B (ENSPSIG00000010224)	POMC (ENSPSIG00000011544)	ENSPSIG00000011583	STMN4 (ENSPSIG00000011792) #20	TRIM35 (ENSPSIG00000011967) #21	PTK2B (ENSPSIG00000012087) #22	CHRNA2 (ENSPSIG00000012597) #23	ENSPSIG00000001059	EPHX2 (ENSPSIG00000012781) #24
Anura	ANCESTRAL SPECIES	34	ENSGT00940000156491.a	ENSGT00940000159021 #37	ENSGT00390000013141 #33	ENSGT00940000166178	ENSGT00950000183149.C #35	ENSGT00940000157136 #36	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #20	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722.b	ENSGT00950000183074.B.a.a #31	ENSGT00720000108839 #30	ENSGT00940000158598 #28	ENSGT00390000004380 #27	ENSGT00940000158238 #26	ENSGT00530000063668.B #25	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000166976	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00940000155731
Leishan spiny toad	MODERN SPECIES	7	ELP3 (ENSLLEG00000005516) #33	ENSLLEG00000005468	ENSLLEG00000005445 #35	ENSLLEG00000005414	ZNF395 (ENSLLEG00000005337) #36	ENSLLEG00000005310	NCOA1 (ENSLLEG00000005168)	PTRHD1 (ENSLLEG00000005116)	CENPO (ENSLLEG00000012699)	ADCY3 (ENSLLEG00000012527)	DNAJC27 (ENSLLEG00000012462)	ENSLLEG00000012442	EFR3B (ENSLLEG00000011133)	POMC (ENSLLEG00000011034)	STMN4 (ENSLLEG00000010881) #20	PTK2B (ENSLLEG00000010058) #22	ENSLLEG00000009998	CHRNA2 (ENSLLEG00000009846) #23	ENSLLEG00000009799	EPHX2 (ENSLLEG00000009541) #24	ENSLLEG00000009335	SCARA5 (ENSLLEG00000009205) #31	ENSLLEG00000009160	PBK (ENSLLEG00000009108) #30	ESCO2 (ENSLLEG00000008998) #28	ENSLLEG00000008956	ENSLLEG00000008895	ENSLLEG00000008782	ENSLLEG00000008764	ENSLLEG00000008736	ENSLLEG00000008704
Frog	MODERN SPECIES	5	ENSXETG00000043553	ENSXETG00000041111	ENSXETG00000047272	ncoa1 (ENSXETG00000021173)	ENSXETG00000046821	ENSXETG00000047353	ENSXETG00000048191	ptrhd1 (ENSXETG00000045671)	cenpo (ENSXETG00000044445)	dnajc27 (ENSXETG00000021179)	DNAJC27 (ENSXETG00000021184)	efr3b (ENSXETG00000017509)	pomc (ENSXETG00000017532)	ENSXETG00000030926	stmn4 (ENSXETG00000017530) #20	ptk2b (ENSXETG00000017538) #22	chrna2 (ENSXETG00000017553) #23	ephx2 (ENSXETG00000017581) #24	ENSXETG00000046510	ENSXETG00000039990	ENSXETG00000035690	ENSXETG00000044272	ENSXETG00000046509	ENSXETG00000044020	asxl2 (ENSXETG00000003167)	kif3c (ENSXETG00000024790)	rab10 (ENSXETG00000044662)	garem2 (ENSXETG00000033300)	hadha (ENSXETG00000026457)	hadhb (ENSXETG00000003203)	ENSXETG00000042101
Coelacanth	MODERN SPECIES	2355																PTK2B (ENSLACG00000000159) #22	CHRNA2 (ENSLACG00000003345) #23
Actinopterygii	ANCESTRAL SPECIES	611																ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Reedfish	MODERN SPECIES	11	mocs1 (ENSECRG00000002018)	fosl2 (ENSECRG00000002038)	babam2 (ENSECRG00000002050)	rbks (ENSECRG00000002078)	mrpl33 (ENSECRG00000002103)	ENSECRG00000002127	supt7l (ENSECRG00000002142)	ENSECRG00000002158	ENSECRG00000002166	ENSECRG00000002186	ENSECRG00000002197	ENSECRG00000002205	ENSECRG00000002224	ENSECRG00000002238	ENSECRG00000002249	ptk2bb (ENSECRG00000002266) #22	chrna2a (ENSECRG00000002308) #23	ephx2 (ENSECRG00000002555) #24	ENSECRG00000002939	ENSECRG00000002951	ENSECRG00000002966	ENSECRG00000002982	ENSECRG00000002991	ENSECRG00000003000	ENSECRG00000003009	CLDN14 (ENSECRG00000003015)	ENSECRG00000003022	ENSECRG00000003047	ENSECRG00000003101	ENSECRG00000003123	ENSECRG00000003139
Neopterygii	ANCESTRAL SPECIES	144	ENSGT00950000183056.A.b	ENSGT00940000162690	ENSGT00940000159969.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000158351	ENSGT00940000162505	ENSGT00390000015191	ENSGT00390000004585	ENSGT00550000074816.A.a	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT01030000234809	ENSGT00390000009045	ENSGT00940000160303.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299 #23	ENSGT00940000158614 #24	ENSGT00510000049722
Osteoglossocephalai	ANCESTRAL SPECIES	423															ENSGT00940000160303.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.b #23	ENSGT00940000158614 #24	ENSGT00940000156634.b	ENSGT00940000158687.b
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188.c	ENSGT00940000162190	ENSGT00530000063651.a.a.a	ENSGT00390000017888	ENSGT00390000004915.b	ENSGT00950000183056.A.b.a	ENSGT00940000158351	ENSGT00940000162505.a	ENSGT01100000263595	ENSGT00550000074816.A.a	ENSGT00940000159266	ENSGT01060000249589	ENSGT00530000063712.a.b	ENSGT00390000009045	ENSGT00940000157269.a.a.e #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962.e	ENSGT00940000161092.e	ENSGT00450000040279	ENSGT00390000014037	ENSGT00940000157818
Asian bonytongue	MODERN SPECIES		acbd3 (ENSSFOG00015019907)	NHSL1 (ENSSFOG00015019880)	hebp2 (ENSSFOG00015019865)	KIF25 (ENSSFOG00015019835)	ccdc167 (ENSSFOG00015033255)	ENSSFOG00015019778	fbxo25 (ENSSFOG00015019748)	FAM110C (ENSSFOG00015019719)	ACP1 (ENSSFOG00015019690)	alkal2a (ENSSFOG00015019674)	ENSSFOG00015024238	si:dkey-119f1.1 (ENSSFOG00015019613)	ENSSFOG00015019591	msgn1 (ENSSFOG00015029687)	mrps10 (ENSSFOG00015019575)	ptk2bb (ENSSFOG00015019535) #22	CHRNA2 (ENSSFOG00015019515) #23	ENSSFOG00015025996	nme6 (ENSSFOG00015032055)	eif2b4 (ENSSFOG00015019463)	atraid (ENSSFOG00015019483)	snx17 (ENSSFOG00015019402)	znf513a (ENSSFOG00015026422)	ENSSFOG00015009449	ENSSFOG00015009430	FNDC4 (ENSSFOG00015028520)	ENSSFOG00015009405	sox7 (ENSSFOG00015028398)	pinx1 (ENSSFOG00015009356)	tdh (ENSSFOG00015009319)	mtmr9 (ENSSFOG00015009278)
P. kingsleyae	MODERN SPECIES	83	acbd3 (ENSPKIG00000006236)	NHSL1 (ENSPKIG00000006273)	ENSPKIG00000006314	ENSPKIG00000006329	fbxo25 (ENSPKIG00000006352)	FAM110C (ENSPKIG00000006382)	ENSPKIG00000006398	ENSPKIG00000006478	ACP1 (ENSPKIG00000006517)	alkal2a (ENSPKIG00000006569)	ENSPKIG00000006583	si:dkey-119f1.1 (ENSPKIG00000006625)	ENSPKIG00000006705	ENSPKIG00000006733	mrps10 (ENSPKIG00000006748)	ptk2bb (ENSPKIG00000006792) #22	CHRNA2 (ENSPKIG00000006903) #23	ENSPKIG00000006940	ENSPKIG00000006954	ENSPKIG00000006971	ENSPKIG00000006985
Osteoglossiformes	ANCESTRAL SPECIES	273														ENSGT00390000015191	ENSGT00940000160303.b	ENSGT00940000157269.a.a.f #22	ENSGT00940000158299.b #23	ENSGT00940000156634.b	ENSGT00940000158687.b	ENSGT00390000005345	ENSGT00940000164033	ENSGT00940000165962.f	ENSGT00940000154242.a	ENSGT00940000161092.f	ENSGT00940000159933.h	ENSGT00940000156406.b.b	ENSGT00940000160171	ENSGT00390000010738	ENSGT00550000074922	ENSGT00950000182986.a.b.a.b	ENSGT00390000005826.a.b.f
Asian bonytongue	MODERN SPECIES	6	EFR3B (ENSSFOG00015017545)	dnajc27 (ENSSFOG00015025414)	ENSSFOG00015017449	XDH (ENSSFOG00015017156)	lin9 (ENSSFOG00015017101)	zgc:162964 (ENSSFOG00015017080)	ECT2L (ENSSFOG00015017030)	ccdc28a (ENSSFOG00015016999)	NHSL1 (ENSSFOG00015016946)	cmtr1 (ENSSFOG00015016868)	ENSSFOG00015024515	SH3YL1 (ENSSFOG00015016778)	alkal2b (ENSSFOG00015016768)	tmem18 (ENSSFOG00015031498)	TRERF1 (ENSSFOG00015016620)	PTK2B (ENSSFOG00015016572) #22	chrna2a (ENSSFOG00015016535) #23	plaat1l (ENSSFOG00015016512)	ENSSFOG00015016481	ENSSFOG00015016163	ENSSFOG00015032782	ENSSFOG00015016083	ENSSFOG00015016063	ENSSFOG00015016040	SOX7 (ENSSFOG00015029357)	XKR6 (ENSSFOG00015016007)	ENSSFOG00015016000	fam167aa (ENSSFOG00015015994)	CLIC5 (ENSSFOG00015015979)	runx2a (ENSSFOG00015015956)	supt3h (ENSSFOG00015015906)
P. kingsleyae	MODERN SPECIES	34													tmem18 (ENSPKIG00000014597)	ENSPKIG00000014614	TRERF1 (ENSPKIG00000014668)	PTK2B (ENSPKIG00000014835) #22	chrna2a (ENSPKIG00000014968) #23	plaat1l (ENSPKIG00000015014)	ZNF513 (ENSPKIG00000015051)	ENSPKIG00000015074	ENSPKIG00000015118	ENSPKIG00000015142	ENSPKIG00000015182	SOX7 (ENSPKIG00000015196)	XKR6 (ENSPKIG00000015213)	ENSPKIG00000015234	fam167aa (ENSPKIG00000015243)	CLIC5 (ENSPKIG00000015260)	runx2a (ENSPKIG00000015280)	supt3h (ENSPKIG00000015333)	cdc5l (ENSPKIG00000015398)
Clupeocephala	ANCESTRAL SPECIES	276					ENSGT01030000234555.a.b.f.b	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.b	ENSGT00390000016811.g	ENSGT00940000164041.b.b	ENSGT00940000156557.g	ENSGT00940000162505.b	ENSGT00510000048137	ENSGT00940000160303.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.b #23	ENSGT00940000158614 #24	ENSGT00940000156634.b	ENSGT00940000158687.a.b	ENSGT00940000158687.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d
Euteleosteomorpha	ANCESTRAL SPECIES	131	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000154297.A.g.b	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Acanthomorphata	ANCESTRAL SPECIES	97	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000154297.A.g.b	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT01000000215766	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT01000000215766	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279
Tiger tail seahorse	MODERN SPECIES	340	daam1b (ENSHCOG00000008052)	ppp1r13bb (ENSHCOG00000007945)	eif2b2 (ENSHCOG00000007914)	tmed10 (ENSHCOG00000007895)	fosab (ENSHCOG00000007886)	ENSHCOG00000007878	jdp2b (ENSHCOG00000007868)	ENSHCOG00000007864	ENSHCOG00000007858	ENSHCOG00000007850	esrrb (ENSHCOG00000007835)	FLVCR2 (ENSHCOG00000000262)	batf (ENSHCOG00000007809)	zc3h14 (ENSHCOG00000007792)	ENSHCOG00000007787	ptk2bb (ENSHCOG00000007778) #22	CHRNA2 (ENSHCOG00000007741) #23	slc2a12 (ENSHCOG00000007685)	tbpl1 (ENSHCOG00000007678)	tcf21 (ENSHCOG00000007666)	eya4 (ENSHCOG00000007656)	rps12 (ENSHCOG00000007614)	ENSHCOG00000007577	ENSHCOG00000007570	sh3bgrl2 (ENSHCOG00000007562)	ENSHCOG00000007555	ccm2 (ENSHCOG00000007526)	xkr6b (ENSHCOG00000007496)	mtmr9 (ENSHCOG00000007477)	tdh (ENSHCOG00000007451)	pinx1 (ENSHCOG00000007428)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Aplocheiloidei	ANCESTRAL SPECIES	36	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000175432	ENSGT00940000161092	ENSGT00450000040279
Mangrove rivulus	MODERN SPECIES	100	vsx2 (ENSKMAG00000014143)	eif2b2 (ENSKMAG00000014088)	pomca (ENSKMAG00000014073)	tmed10 (ENSKMAG00000014045)	fosab (ENSKMAG00000014021)	ENSKMAG00000014003	jdp2b (ENSKMAG00000013974)	ENSKMAG00000013946	ENSKMAG00000013878	esrrb (ENSKMAG00000013840)	TGFB3 (ENSKMAG00000013827)	FLVCR2 (ENSKMAG00000013797)	batf (ENSKMAG00000013768)	zc3h14 (ENSKMAG00000013693)	ENSKMAG00000013679	ptk2bb (ENSKMAG00000013508) #22	CHRNA2 (ENSKMAG00000013440) #23	BAALC (ENSKMAG00000013427)	nme6 (ENSKMAG00000013397)	eif2b4 (ENSKMAG00000013298)	atraid (ENSKMAG00000013258)	snx17 (ENSKMAG00000013208)	znf513a (ENSKMAG00000013183)	ENSKMAG00000013162	ENSKMAG00000013095	FNDC4 (ENSKMAG00000013043)	ENSKMAG00000013010	ENSKMAG00000012988	sox7 (ENSKMAG00000012969)	pinx1 (ENSKMAG00000012953)	tdh (ENSKMAG00000012911)
Turquoise killifish	MODERN SPECIES	174																ptk2bb (ENSNFUG00015017101) #22	CHRNA2 (ENSNFUG00015017089) #23
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279
NAME_4	ANCESTRAL SPECIES	8	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c	ENSGT00940000157818
Mummichog	MODERN SPECIES	748													zc3h14 (ENSFHEG00000020403)	ENSFHEG00000020393	ENSFHEG00000020376	ptk2bb (ENSFHEG00000020358) #22	CHRNA2 (ENSFHEG00000020314) #23
Sheepshead minnow	MODERN SPECIES	116	vsx2 (ENSCVAG00000022693)	batf (ENSCVAG00000022701)	FLVCR2 (ENSCVAG00000022708)	TGFB3 (ENSCVAG00000022713)	esrrb (ENSCVAG00000022733)	YLPM1 (ENSCVAG00000022796)	ENSCVAG00000022806	DLST (ENSCVAG00000022836)	jdp2b (ENSCVAG00000022845)	ENSCVAG00000022851	fosab (ENSCVAG00000022858)	tmed10 (ENSCVAG00000022868)	eif2b2 (ENSCVAG00000022891)	zc3h14 (ENSCVAG00000000590)	ENSCVAG00000022908	ptk2bb (ENSCVAG00000022965) #22	CHRNA2 (ENSCVAG00000023091) #23	ENSCVAG00000023107	nme6 (ENSCVAG00000023142)	eif2b4 (ENSCVAG00000023159)	atraid (ENSCVAG00000023183)	snx17 (ENSCVAG00000023233)	znf513a (ENSCVAG00000023273)	ENSCVAG00000023292	ENSCVAG00000023311	FNDC4 (ENSCVAG00000023318)	ENSCVAG00000000610	sox7 (ENSCVAG00000000613)	pinx1 (ENSCVAG00000023335)	tdh (ENSCVAG00000006516)	mtmr9 (ENSCVAG00000006546)
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837.k	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a.f	ENSGT00940000155693.a.a.e	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
NAME_6	ANCESTRAL SPECIES	2	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837.k	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a.f	ENSGT00940000155693.a.a.e	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Amazon molly	MODERN SPECIES	304	FLVCR2 (ENSPFOG00000007223)	TGFB3 (ENSPFOG00000007494)	esrrb (ENSPFOG00000007540)	YLPM1 (ENSPFOG00000007687)	ENSPFOG00000007812	ENSPFOG00000024079	DLST (ENSPFOG00000007814)	JDP2 (ENSPFOG00000007886)	JDP2 (ENSPFOG00000007903)	ENSPFOG00000007924	fosab (ENSPFOG00000008004)	tmed10 (ENSPFOG00000008076)	eif2b2 (ENSPFOG00000008104)	zc3h14 (ENSPFOG00000008213)	ENSPFOG00000021890	ptk2bb (ENSPFOG00000008438) #22	CHRNA2 (ENSPFOG00000008992) #23	ENSPFOG00000009092	nme6 (ENSPFOG00000009100)	eif2b4 (ENSPFOG00000009151)	atraid (ENSPFOG00000009271)	snx17 (ENSPFOG00000009280)	znf513a (ENSPFOG00000009465)	ENSPFOG00000009486	ENSPFOG00000009533	FNDC4 (ENSPFOG00000009579)	ENSPFOG00000009705	ENSPFOG00000009944	sox7 (ENSPFOG00000009961)	pinx1 (ENSPFOG00000009972)	tdh (ENSPFOG00000010033)
Sailfin molly	MODERN SPECIES	1784																ptk2bb (ENSPLAG00000020366) #22	CHRNA2 (ENSPLAG00000020357) #23
Guppy	MODERN SPECIES	452	ENSPREG00000019767	batf (ENSPREG00000019749)	FLVCR2 (ENSPREG00000019720)	ENSPREG00000019682	TGFB3 (ENSPREG00000019674)	esrrb (ENSPREG00000019646)	YLPM1 (ENSPREG00000019611)	ENSPREG00000019593	DLST (ENSPREG00000019575)	JDP2 (ENSPREG00000019566)	ENSPREG00000019546	fosab (ENSPREG00000019537)	tmed10 (ENSPREG00000019502)	eif2b2 (ENSPREG00000019462)	zc3h14 (ENSPREG00000019413)	ptk2bb (ENSPREG00000019336) #22	CHRNA2 (ENSPREG00000019311) #23	ENSPREG00000019302	nme6 (ENSPREG00000019290)	eif2b4 (ENSPREG00000019206)	atraid (ENSPREG00000019181)	snx17 (ENSPREG00000019139)	znf513a (ENSPREG00000019118)	ENSPREG00000019103	ENSPREG00000019088	FNDC4 (ENSPREG00000019076)	ENSPREG00000019054	ENSPREG00000019043	sox7 (ENSPREG00000019032)	pinx1 (ENSPREG00000019021)	tdh (ENSPREG00000018991)
Platyfish	MODERN SPECIES	6	ENSXMAG00000029801	vsx2 (ENSXMAG00000024293)	batf (ENSXMAG00000025113)	FLVCR2 (ENSXMAG00000003955)	TGFB3 (ENSXMAG00000003970)	esrrb (ENSXMAG00000003978)	YLPM1 (ENSXMAG00000003988)	ENSXMAG00000004000	DLST (ENSXMAG00000022519)	JDP2 (ENSXMAG00000025219)	ENSXMAG00000013196	fosab (ENSXMAG00000004017)	tmed10 (ENSXMAG00000027668)	eif2b2 (ENSXMAG00000004027)	zc3h14 (ENSXMAG00000004041)	ptk2bb (ENSXMAG00000004048) #22	CHRNA2 (ENSXMAG00000004108) #23	ENSXMAG00000023612	nme6 (ENSXMAG00000004142)	eif2b4 (ENSXMAG00000004149)	atraid (ENSXMAG00000029577)	snx17 (ENSXMAG00000004181)	znf513a (ENSXMAG00000022249)	ENSXMAG00000004219	ENSXMAG00000025068	FNDC4 (ENSXMAG00000012806)	ENSXMAG00000012817	ENSXMAG00000022301	sox7 (ENSXMAG00000004225)	pinx1 (ENSXMAG00000027197)	tdh (ENSXMAG00000004234)
Oryzias	ANCESTRAL SPECIES	49								ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430.m	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00940000158595	ENSGT00390000018632	ENSGT00940000156072.a.a	ENSGT01020000230412.B.a	ENSGT00940000160891	ENSGT00940000154473.b	ENSGT00940000164252.a.a	ENSGT00940000157241	ENSGT00940000153417.B	ENSGT00940000165219	ENSGT00990000203619.A.b.b.a.h	ENSGT00990000203619.A.b.b.a.g.b	ENSGT00990000203619.A.b.b.a.g.a	ENSGT00530000063669.b.a
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00940000157418.a	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000160636	ENSGT00940000157865	ENSGT00940000153511.b.r	ENSGT00950000182856.a.b.b	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430.m	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00940000158595	ENSGT00390000018632	ENSGT00940000156072.a.a	ENSGT01020000230412.B.a	ENSGT00940000160891	ENSGT00940000154473.b	ENSGT00940000157241	ENSGT00940000164252.a.a	ENSGT00940000153417.B	ENSGT00940000165219	ENSGT00990000203619.A.b.b.a.h	ENSGT00990000203619.A.b.b.a.g.b	ENSGT00990000203619.A.b.b.a.g.a	ENSGT00530000063669.b.a
Japanese Medaka HdrR	MODERN SPECIES	16	pex7 (ENSORLG00000009259)	ENSORLG00000025170	ENSORLG00000009237	syncrip (ENSORLG00000009190)	ENSORLG00000009176	ENSORLG00000025230	ENSORLG00000009148	errb2 (ENSORLG00000009126)	ENSORLG00000009111	ENSORLG00000009088	batf (ENSORLG00000009061)	zc3h14 (ENSORLG00000009049)	ENSORLG00000026798	ENSORLG00000022925	ENSORLG00000025690	ptk2bb (ENSORLG00000008993) #22	CHRNA2 (ENSORLG00000008800) #23	ENSORLG00000027635	ENSORLG00000025463	gtf3c2 (ENSORLG00000008780)	slc30a2 (ENSORLG00000008773)	ENSORLG00000008762	mpv17 (ENSORLG00000008726)	uts1 (ENSORLG00000023800)	cad (ENSORLG00000008703)	dnajc5ga (ENSORLG00000008663)	ift172 (ENSORLG00000008648)	msraa (ENSORLG00000028023)	ENSORLG00000029486	ENSORLG00000008528	ENSORLG00000008516
Chinese medaka	MODERN SPECIES	63	gje1a (ENSOSIG00000000081)	NMBR (ENSOSIG00000000075)	ENSOSIG00000000068	SLC35D3 (ENSOSIG00000000061)	pex7 (ENSOSIG00000000053)	ENSOSIG00000021873	syncrip (ENSOSIG00000021852)	ENSOSIG00000021737	esrrb (ENSOSIG00000021729)	TGFB3 (ENSOSIG00000021713)	ENSOSIG00000021710	ENSOSIG00000021708	batf (ENSOSIG00000021705)	zc3h14 (ENSOSIG00000021701)	ENSOSIG00000021697	ptk2bb (ENSOSIG00000021680) #22
Oryzias_b	ANCESTRAL SPECIES	90								ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430.m	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00940000158595	ENSGT00390000018632	ENSGT00940000156072.a.a	ENSGT01020000230412.B.a	ENSGT00940000160891	ENSGT00940000154473.b	ENSGT00940000164252.a.a	ENSGT00940000157241	ENSGT00940000153417.B	ENSGT00940000165219	ENSGT00990000203619.A.b.b.a.h	ENSGT00990000203619.A.b.b.a.g.b	ENSGT00990000203619.A.b.b.a.g.a	ENSGT00530000063669.b.a
Indian medaka	MODERN SPECIES	22	ENSOMEG00000018620	ENSOMEG00000018604	zc3h14 (ENSOMEG00000018596)	batf (ENSOMEG00000018556)	FLVCR2 (ENSOMEG00000018525)	ENSOMEG00000018488	ENSOMEG00000018479	ENSOMEG00000018470	ENSOMEG00000018455	esrrb (ENSOMEG00000018405)	TGFB3 (ENSOMEG00000018362)	snx14 (ENSOMEG00000018330)	syncrip (ENSOMEG00000018227)	ENSOMEG00000018181	hey2 (ENSOMEG00000018142)	ptk2bb (ENSOMEG00000018111) #22	CHRNA2 (ENSOMEG00000017967) #23	ENSOMEG00000017941	slc30a2 (ENSOMEG00000017894)	ENSOMEG00000000448	ENSOMEG00000017870	mpv17 (ENSOMEG00000017853)	dnajc5ga (ENSOMEG00000017814)	ENSOMEG00000017799	ENSOMEG00000017757	ENSOMEG00000017742	ENSOMEG00000017733	msraa (ENSOMEG00000017697)	ENSOMEG00000017674	ENSOMEG00000017666	ENSOMEG00000017658
Javanese ricefish	MODERN SPECIES	16	scara5 (ENSOJAG00000018498) #31	pbk (ENSOJAG00000018486) #30	ccdc25 (ENSOJAG00000018457) #27	max (ENSOJAG00000018434)	srsf5b (ENSOJAG00000018408)	susd6 (ENSOJAG00000018389)	gpr176 (ENSOJAG00000018381)	ENSOJAG00000018257	ENSOJAG00000018242	esrrb (ENSOJAG00000018225)	TGFB3 (ENSOJAG00000018208)	ENSOJAG00000018185	FLVCR2 (ENSOJAG00000018174)	zc3h14 (ENSOJAG00000018128)	ENSOJAG00000018092	ptk2bb (ENSOJAG00000017928) #22	CHRNA2 (ENSOJAG00000017885) #23	ENSOJAG00000017878	ENSOJAG00000017874	gtf3c2 (ENSOJAG00000017829)	slc30a2 (ENSOJAG00000017815)	ENSOJAG00000017637	mpv17 (ENSOJAG00000017618)	uts1 (ENSOJAG00000017608)	dnajc5ga (ENSOJAG00000017602)	ENSOJAG00000017201	msraa (ENSOJAG00000017182)	ENSOJAG00000017177	ENSOJAG00000017171	GPR31 (ENSOJAG00000017166)	ENSOJAG00000017159
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Pomacentridae	ANCESTRAL SPECIES	34	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT01030000234620.a.b.b.b	ENSGT00530000064210	ENSGT00390000011724	ENSGT00950000182836.b.a.b	ENSGT00940000156989	ENSGT00950000183246	ENSGT00940000156484.b.e.b	ENSGT00390000002089.a.a.a
Pomacentridae_A	ANCESTRAL SPECIES	33	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT01030000234620.a.b.b.b	ENSGT00530000064210	ENSGT00390000011724	ENSGT00950000182836.b.a.b	ENSGT00940000156989	ENSGT00940000156484.b.e.b	ENSGT00950000183246	ENSGT00390000002089.a.a.a
Amphiprion	ANCESTRAL SPECIES	51	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT01030000234620.a.b.b.b	ENSGT00530000064210	ENSGT00390000011724	ENSGT00950000182836.b.a.b	ENSGT00940000156989	ENSGT00940000156484.b.e.b	ENSGT00950000183246	ENSGT00390000002089.a.a.a
Clown anemonefish	MODERN SPECIES	3192															zc3h14 (ENSAOCG00000024218)	ptk2bb (ENSAOCG00000024168) #22	CHRNA2 (ENSAOCG00000024092) #23	ENSAOCG00000024082	ENSAOCG00000024074	nme6 (ENSAOCG00000024061)	eif2b4 (ENSAOCG00000024037)	atraid (ENSAOCG00000024009)	snx17 (ENSAOCG00000023999)	znf513a (ENSAOCG00000023963)	PPP2R5A (ENSAOCG00000023949)	dtl (ENSAOCG00000023941)	ints7 (ENSAOCG00000023924)	lpgat1 (ENSAOCG00000023892)	nek2 (ENSAOCG00000023881)	slc30a1a (ENSAOCG00000023862)	ENSAOCG00000001748
Orange clownfish	MODERN SPECIES	2	eif2b2 (ENSAPEG00000001351)	tmed10 (ENSAPEG00000001388)	fosab (ENSAPEG00000001415)	ENSAPEG00000001432	jdp2b (ENSAPEG00000001618)	ENSAPEG00000001634	DLST (ENSAPEG00000001698)	ENSAPEG00000001710	YLPM1 (ENSAPEG00000001749)	esrrb (ENSAPEG00000001797)	TGFB3 (ENSAPEG00000001818)	FLVCR2 (ENSAPEG00000001849)	batf (ENSAPEG00000001859)	zc3h14 (ENSAPEG00000001867)	ENSAPEG00000001895	ptk2bb (ENSAPEG00000001933) #22	CHRNA2 (ENSAPEG00000002072) #23	ENSAPEG00000002186	nme6 (ENSAPEG00000002211)	eif2b4 (ENSAPEG00000002245)	atraid (ENSAPEG00000002265)	snx17 (ENSAPEG00000002283)	znf513a (ENSAPEG00000002344)	PPP2R5A (ENSAPEG00000002381)	dtl (ENSAPEG00000002413)	ints7 (ENSAPEG00000002472)	lpgat1 (ENSAPEG00000002569)	nek2 (ENSAPEG00000002624)	slc30a1a (ENSAPEG00000002663)	ENSAPEG00000002668	rd3 (ENSAPEG00000002681)
Spiny chromis	MODERN SPECIES	239						jdp2b (ENSAPOG00000001814)	DLST (ENSAPOG00000001796)	ENSAPOG00000001782	YLPM1 (ENSAPOG00000001746)	esrrb (ENSAPOG00000001700)	TGFB3 (ENSAPOG00000001689)	FLVCR2 (ENSAPOG00000001671)	batf (ENSAPOG00000001651)	zc3h14 (ENSAPOG00000001640)	ENSAPOG00000001631	ptk2bb (ENSAPOG00000001621) #22	CHRNA2 (ENSAPOG00000001602) #23
Bicolor damselfish	MODERN SPECIES	904								ENSSPAG00000014584	esrrb (ENSSPAG00000014566)	TGFB3 (ENSSPAG00000014554)	ENSSPAG00000014537	FLVCR2 (ENSSPAG00000014524)	batf (ENSSPAG00000014501)	zc3h14 (ENSSPAG00000014475)	ENSSPAG00000014464	ptk2bb (ENSSPAG00000014317) #22
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Burton s mouthbrooder	MODERN SPECIES	276	vsx2 (ENSHBUG00000012075)	eif2b2 (ENSHBUG00000012113)	tmed10 (ENSHBUG00000012126)	fosab (ENSHBUG00000012155)	ENSHBUG00000012204	jdp2b (ENSHBUG00000012218)	ENSHBUG00000012234	DLST (ENSHBUG00000012267)	ENSHBUG00000012272	YLPM1 (ENSHBUG00000012325)	esrrb (ENSHBUG00000012379)	TGFB3 (ENSHBUG00000012406)	ENSHBUG00000012486	batf (ENSHBUG00000012500)	zc3h14 (ENSHBUG00000012522)	ptk2bb (ENSHBUG00000012561) #22	CHRNA2 (ENSHBUG00000012577) #23	ENSHBUG00000012585	nme6 (ENSHBUG00000012626)	eif2b4 (ENSHBUG00000012690)	atraid (ENSHBUG00000012717)	snx17 (ENSHBUG00000012794)	znf513a (ENSHBUG00000012802)	ENSHBUG00000012808	ENSHBUG00000012820	FNDC4 (ENSHBUG00000012823)	ENSHBUG00000012831	ENSHBUG00000012851	sox7 (ENSHBUG00000012860)	tdh (ENSHBUG00000012891)	mtmr9 (ENSHBUG00000012918)
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Eastern happy	MODERN SPECIES	6	tmed10 (ENSACLG00000013280)	ENSACLG00000013275	fosab (ENSACLG00000013269)	ENSACLG00000013262	jdp2b (ENSACLG00000013258)	ENSACLG00000013199	DLST (ENSACLG00000013180)	ENSACLG00000013177	YLPM1 (ENSACLG00000013109)	esrrb (ENSACLG00000012797)	TGFB3 (ENSACLG00000012784)	FLVCR2 (ENSACLG00000012759)	ENSACLG00000012746	batf (ENSACLG00000012725)	zc3h14 (ENSACLG00000012665)	ptk2bb (ENSACLG00000012333) #22	CHRNA2 (ENSACLG00000012300) #23	ENSACLG00000012294	nme6 (ENSACLG00000012254)	eif2b4 (ENSACLG00000012164)	atraid (ENSACLG00000012105)	snx17 (ENSACLG00000012039)	znf513a (ENSACLG00000011988)	ENSACLG00000011949	ENSACLG00000011867	FNDC4 (ENSACLG00000011836)	ENSACLG00000011807	ENSACLG00000011792	sox7 (ENSACLG00000011783)	pinx1 (ENSACLG00000011764)	tdh (ENSACLG00000011746)
Zebra mbuna	MODERN SPECIES	1097	ENSMZEG00005015353	sec63 (ENSMZEG00005015369)	iyd (ENSMZEG00005015400)	ppp1r14c (ENSMZEG00005015409)	ENSMZEG00005015434	armc1l (ENSMZEG00005015470)	mtfr2 (ENSMZEG00005015488)	ENSMZEG00005015495	PDE7B (ENSMZEG00005015508)	myb (ENSMZEG00005015531)	hbs1l (ENSMZEG00005015575)	aldh8a1 (ENSMZEG00005015598)	SGK1 (ENSMZEG00005015609)	slc2a12 (ENSMZEG00005015652)	tbpl1 (ENSMZEG00005015661)	ptk2bb (ENSMZEG00005015713) #22	CHRNA2 (ENSMZEG00005015764) #23	ENSMZEG00005016044	nme6 (ENSMZEG00005016052)	eif2b4 (ENSMZEG00005016074)	atraid (ENSMZEG00005016085)	snx17 (ENSMZEG00005016097)	znf513a (ENSMZEG00005016122)	ENSMZEG00005016128	ENSMZEG00005016143	FNDC4 (ENSMZEG00005016152)	ENSMZEG00005016158	sox7 (ENSMZEG00005016164)	pinx1 (ENSMZEG00005016167)	tdh (ENSMZEG00005016174)	mtmr9 (ENSMZEG00005016186)
P. nyererei	MODERN SPECIES	353	vsx2 (ENSPNYG00000008171)	eif2b2 (ENSPNYG00000008123)	tmed10 (ENSPNYG00000008096)	fosab (ENSPNYG00000008073)	ENSPNYG00000007896	jdp2b (ENSPNYG00000007866)	DLST (ENSPNYG00000007848)	ENSPNYG00000007842	YLPM1 (ENSPNYG00000007791)	esrrb (ENSPNYG00000007760)	TGFB3 (ENSPNYG00000007736)	ENSPNYG00000007714	FLVCR2 (ENSPNYG00000007684)	batf (ENSPNYG00000007662)	zc3h14 (ENSPNYG00000007634)	ptk2bb (ENSPNYG00000007492) #22	CHRNA2 (ENSPNYG00000007392) #23	ENSPNYG00000007364	nme6 (ENSPNYG00000007283)	eif2b4 (ENSPNYG00000007166)	atraid (ENSPNYG00000007149)	snx17 (ENSPNYG00000007104)	znf513a (ENSPNYG00000007085)	ENSPNYG00000007055	ENSPNYG00000007005	FNDC4 (ENSPNYG00000006978)	ENSPNYG00000006699	sox7 (ENSPNYG00000006640)	pinx1 (ENSPNYG00000006606)	tdh (ENSPNYG00000006573)	mtmr9 (ENSPNYG00000006534)
Lyretail cichlid	MODERN SPECIES	338	eif2b2 (ENSNBRG00000018798)	tmed10 (ENSNBRG00000018828)	fosab (ENSNBRG00000018852)	ENSNBRG00000018888	jdp2b (ENSNBRG00000018983)	DLST (ENSNBRG00000019002)	ENSNBRG00000019031	ENSNBRG00000019044	YLPM1 (ENSNBRG00000019064)	esrrb (ENSNBRG00000019101)	ENSNBRG00000019123	FLVCR2 (ENSNBRG00000019135)	ENSNBRG00000019153	batf (ENSNBRG00000019169)	zc3h14 (ENSNBRG00000019192)	ptk2bb (ENSNBRG00000019226) #22	CHRNA2 (ENSNBRG00000019298) #23	ENSNBRG00000019368	nme6 (ENSNBRG00000019387)	eif2b4 (ENSNBRG00000019417)	atraid (ENSNBRG00000019469)	ENSNBRG00000019479	znf513a (ENSNBRG00000019495)	ENSNBRG00000019516	ENSNBRG00000019538	FNDC4 (ENSNBRG00000019563)	ENSNBRG00000019583	ENSNBRG00000019609	sox7 (ENSNBRG00000019620)	pinx1 (ENSNBRG00000019635)	tdh (ENSNBRG00000019678)
Nile tilapia	MODERN SPECIES	6	eif2b2 (ENSONIG00000015252)	tmed10 (ENSONIG00000015257)	fosab (ENSONIG00000036571)	ENSONIG00000015266	jdp2b (ENSONIG00000015268)	ENSONIG00000015269	DLST (ENSONIG00000015272)	ENSONIG00000038853	YLPM1 (ENSONIG00000015280)	esrrb (ENSONIG00000015282)	TGFB3 (ENSONIG00000015284)	ENSONIG00000015287	ENSONIG00000027931	batf (ENSONIG00000039750)	zc3h14 (ENSONIG00000015292)	ptk2bb (ENSONIG00000015297) #22	CHRNA2 (ENSONIG00000015309) #23	nme6 (ENSONIG00000027332)	ENSONIG00000039243	eif2b4 (ENSONIG00000015313)	atraid (ENSONIG00000015316)	snx17 (ENSONIG00000015317)	znf513a (ENSONIG00000015322)	ENSONIG00000015327	ENSONIG00000040580	FNDC4 (ENSONIG00000015331)	ENSONIG00000015333	ENSONIG00000037235	sox7 (ENSONIG00000042744)	pinx1 (ENSONIG00000015338)	tdh (ENSONIG00000015340)
Midas cichlid	MODERN SPECIES	271	ENSACIG00000004498	vsx2 (ENSACIG00000004475)	eif2b2 (ENSACIG00000004446)	tmed10 (ENSACIG00000004425)	fosab (ENSACIG00000004214)	ENSACIG00000004076	jdp2b (ENSACIG00000004052)	DLST (ENSACIG00000004017)	ENSACIG00000004001	YLPM1 (ENSACIG00000003919)	esrrb (ENSACIG00000003902)	TGFB3 (ENSACIG00000003799)	ENSACIG00000003765	batf (ENSACIG00000003744)	zc3h14 (ENSACIG00000003703)	ptk2bb (ENSACIG00000003644) #22	CHRNA2 (ENSACIG00000003625) #23	ENSACIG00000003613	nme6 (ENSACIG00000003601)	eif2b4 (ENSACIG00000003490)	atraid (ENSACIG00000003435)	snx17 (ENSACIG00000003397)	znf513a (ENSACIG00000003381)	ENSACIG00000003346	ENSACIG00000003331	FNDC4 (ENSACIG00000003310)	ENSACIG00000002654	sox7 (ENSACIG00000002595)	pinx1 (ENSACIG00000002565)	tdh (ENSACIG00000002537)	mtmr9 (ENSACIG00000002510)
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Carangaria	ANCESTRAL SPECIES	18	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Turbot	MODERN SPECIES	12	eif2b2 (ENSSMAG00000012038)	tmed10 (ENSSMAG00000022433)	fosab (ENSSMAG00000012082)	ENSSMAG00000012096	ENSSMAG00000012103	DLST (ENSSMAG00000012118)	ENSSMAG00000012176	YLPM1 (ENSSMAG00000012182)	ENSSMAG00000012264	ENSSMAG00000033798	ENSSMAG00000012299	ENSSMAG00000021677	ENSSMAG00000011976	ENSSMAG00000011970	ENSSMAG00000011810 #23	ptk2bb (ENSSMAG00000011886) #22	ENSSMAG00000031168	nme6 (ENSSMAG00000011767)	eif2b4 (ENSSMAG00000011712)	atraid (ENSSMAG00000011695)	snx17 (ENSSMAG00000011606)	znf513a (ENSSMAG00000011556)	ENSSMAG00000011546	ENSSMAG00000011470	ENSSMAG00000011532	ENSSMAG00000011503	ENSSMAG00000034377	sox7 (ENSSMAG00000011462)	pinx1 (ENSSMAG00000011442)	tdh (ENSSMAG00000011408)	xkr6b (ENSSMAG00000011381)
Tongue sole	MODERN SPECIES	32												vsx2 (ENSCSEG00000013609)	ENSCSEG00000013617	abcd4 (ENSCSEG00000013636)	zc3h14 (ENSCSEG00000013652)	ptk2bb (ENSCSEG00000013676) #22	CHRNA2 (ENSCSEG00000013700) #23	ENSCSEG00000013719	nme6 (ENSCSEG00000013723)	eif2b4 (ENSCSEG00000013734)	atraid (ENSCSEG00000013777)	snx17 (ENSCSEG00000013792)	znf513a (ENSCSEG00000013815)	ENSCSEG00000013823	ENSCSEG00000013833	FNDC4 (ENSCSEG00000013840)	ENSCSEG00000013856
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Barramundi perch	MODERN SPECIES	513											FLVCR2 (ENSLCAG00010002032)	batf (ENSLCAG00010002024)	ENSLCAG00010002011	zc3h14 (ENSLCAG00010002003)	ENSLCAG00010001998	ptk2bb (ENSLCAG00010001956) #22	CHRNA2 (ENSLCAG00010001935) #23	ENSLCAG00010001932	nme6 (ENSLCAG00010001929)
Seriola	ANCESTRAL SPECIES	4	ENSGT00930000151014.r	ENSGT00940000154297.A.g.b	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00940000157776.c.a	ENSGT00940000165253	ENSGT00950000182955.a.a.b	ENSGT00940000158836.a.b	ENSGT00940000156540.b	ENSGT00390000002032	ENSGT00940000156452.a.a	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Greater amberjack	MODERN SPECIES	10	ENSSDUG00000015277	jdp2b (ENSSDUG00000015263)	ENSSDUG00000015080	fosab (ENSSDUG00000015050)	fosab (ENSSDUG00000014939)	tmed10 (ENSSDUG00000014920)	eif2b2 (ENSSDUG00000014892)	vsx2 (ENSSDUG00000014864)	ENSSDUG00000014824	abcd4 (ENSSDUG00000014738)	SGPP1 (ENSSDUG00000014727)	kcnh5a (ENSSDUG00000014701)	L3HYPDH (ENSSDUG00000014690)	daam1b (ENSSDUG00000014610)	ENSSDUG00000014582	ptk2bb (ENSSDUG00000014546) #22	CHRNA2 (ENSSDUG00000014529) #23	ENSSDUG00000014521	nme6 (ENSSDUG00000014494)	eif2b4 (ENSSDUG00000014451)	atraid (ENSSDUG00000014431)	snx17 (ENSSDUG00000014375)	znf513a (ENSSDUG00000014347)	ENSSDUG00000014334	FNDC4 (ENSSDUG00000014323)	ENSSDUG00000013728	ENSSDUG00000013616	ENSSDUG00000013598	sox7 (ENSSDUG00000013596)	pinx1 (ENSSDUG00000013586)	tdh (ENSSDUG00000013570)
Yellowtail amberjack	MODERN SPECIES	2579									ENSSLDG00000012826	abcd4 (ENSSLDG00000012878)	ENSSLDG00000012980	kcnh5a (ENSSLDG00000013002)	L3HYPDH (ENSSLDG00000013034)	daam1b (ENSSLDG00000013098)	ENSSLDG00000013181	ptk2bb (ENSSLDG00000013211) #22	CHRNA2 (ENSSLDG00000013323) #23	ENSSLDG00000013331	nme6 (ENSSLDG00000013345)	eif2b4 (ENSSLDG00000013386)	atraid (ENSSLDG00000013407)	snx17 (ENSSLDG00000013436)	znf513a (ENSSLDG00000013483)
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Zig-zag eel	MODERN SPECIES	16	eif2b2 (ENSMAMG00000017801)	tmed10 (ENSMAMG00000017781)	fosab (ENSMAMG00000024747)	ENSMAMG00000017536	ENSMAMG00000026076	ENSMAMG00000017509	DLST (ENSMAMG00000027751)	ENSMAMG00000017474	YLPM1 (ENSMAMG00000017450)	ENSMAMG00000017424	ENSMAMG00000017415	ENSMAMG00000025513	ENSMAMG00000017405	ENSMAMG00000017394	ENSMAMG00000017380	ptk2bb (ENSMAMG00000017295) #22	ENSMAMG00000017183 #23	ENSMAMG00000017175	nme6 (ENSMAMG00000028337)	eif2b4 (ENSMAMG00000017128)	atraid (ENSMAMG00000027046)	snx17 (ENSMAMG00000017090)	znf513a (ENSMAMG00000017082)	ENSMAMG00000017051	ENSMAMG00000017031	ENSMAMG00000017015	ENSMAMG00000017004	ENSMAMG00000027102	sox7 (ENSMAMG00000016991)	pinx1 (ENSMAMG00000016984)	tdh (ENSMAMG00000016957)
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Climbing perch	MODERN SPECIES	15	eif2b2 (ENSATEG00000007102)	tmed10 (ENSATEG00000027216)	fosab (ENSATEG00000006737)	ENSATEG00000006400	ENSATEG00000006378	ENSATEG00000025438	DLST (ENSATEG00000006339)	ENSATEG00000006311	YLPM1 (ENSATEG00000006214)	ENSATEG00000006182	ENSATEG00000029956	ENSATEG00000006072	ENSATEG00000029792	ENSATEG00000006018	ENSATEG00000005992	ptk2bb (ENSATEG00000005837) #22	ENSATEG00000005801 #23	ENSATEG00000025379	nme6 (ENSATEG00000005750)	eif2b4 (ENSATEG00000005544)	atraid (ENSATEG00000005637)	snx17 (ENSATEG00000005456)	znf513a (ENSATEG00000005448)	ENSATEG00000005442	ENSATEG00000005408	ENSATEG00000005380	ENSATEG00000005341	ENSATEG00000028935	sox7 (ENSATEG00000005327)	pinx1 (ENSATEG00000005291)	tdh (ENSATEG00000005257)
Siamese fighting fish	MODERN SPECIES	13	eif2b2 (ENSBSLG00000008254)	tmed10 (ENSBSLG00000008221)	fosab (ENSBSLG00000008210)	ENSBSLG00000008204	JDP2 (ENSBSLG00000008200)	ENSBSLG00000008123	DLST (ENSBSLG00000007996)	ENSBSLG00000007977	YLPM1 (ENSBSLG00000007846)	esrrb (ENSBSLG00000007771)	TGFB3 (ENSBSLG00000007722)	ENSBSLG00000006790	batf (ENSBSLG00000006452)	zc3h14 (ENSBSLG00000006376)	ENSBSLG00000006291	ptk2bb (ENSBSLG00000005909) #22	CHRNA2 (ENSBSLG00000005899) #23	ENSBSLG00000005895	nme6 (ENSBSLG00000005889)	eif2b4 (ENSBSLG00000005391)	atraid (ENSBSLG00000005291)	snx17 (ENSBSLG00000026014)	znf513a (ENSBSLG00000025984)	ENSBSLG00000025978	ENSBSLG00000025962	FNDC4 (ENSBSLG00000025947)	ENSBSLG00000025697	sox7 (ENSBSLG00000025639)	pinx1 (ENSBSLG00000025630)	tdh (ENSBSLG00000025619)	mtmr9 (ENSBSLG00000025612)
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Ballan wrasse	MODERN SPECIES	121										esrrb (ENSLBEG00000001368)	TGFB3 (ENSLBEG00000001393)	FLVCR2 (ENSLBEG00000001415)	batf (ENSLBEG00000001467)	zc3h14 (ENSLBEG00000001551)	ENSLBEG00000001576	ptk2bb (ENSLBEG00000001622) #22	CHRNA2 (ENSLBEG00000001679) #23	ENSLBEG00000001689	nme6 (ENSLBEG00000001701)	eif2b4 (ENSLBEG00000001764)	atraid (ENSLBEG00000001778)	snx17 (ENSLBEG00000001793)	znf513a (ENSLBEG00000001866)	ENSLBEG00000001889	ENSLBEG00000001919	FNDC4 (ENSLBEG00000001937)	ENSLBEG00000001960	sox7 (ENSLBEG00000002003)	pinx1 (ENSLBEG00000002014)	tdh (ENSLBEG00000002035)	mtmr9 (ENSLBEG00000002091)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Cottioidei	ANCESTRAL SPECIES	23	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT01000000215766	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279
Lumpfish	MODERN SPECIES	16	eif2b2 (ENSCLMG00005019569)	tmed10 (ENSCLMG00005019567)	fosab (ENSCLMG00005019566)	ENSCLMG00005019544	JDP2 (ENSCLMG00005019541)	ENSCLMG00005019540	DLST (ENSCLMG00005019329)	ENSCLMG00005019321	YLPM1 (ENSCLMG00005019318)	ESRRB (ENSCLMG00005019316)	TGFB3 (ENSCLMG00005019292)	FLVCR2 (ENSCLMG00005019286)	batf (ENSCLMG00005019284)	zc3h14 (ENSCLMG00005019281)	ENSCLMG00005019279	ptk2bb (ENSCLMG00005019138) #22	CHRNA2 (ENSCLMG00005019132) #23	ENSCLMG00005019131	ENSCLMG00005019127	eif2b4 (ENSCLMG00005019101)	atraid (ENSCLMG00005019100)	snx17 (ENSCLMG00005018948)	znf513a (ENSCLMG00005018942)	ENSCLMG00005018940	ENSCLMG00005018939	FNDC4 (ENSCLMG00005018938)	ENSCLMG00005017923	ENSCLMG00005017914	sox7 (ENSCLMG00005017912)	ENSCLMG00005017897	tdh (ENSCLMG00005017896)
Stickleback	MODERN SPECIES	18	ENSGACG00000010367	eif2b2 (ENSGACG00000010441)	tmed10 (ENSGACG00000010450)	fosab (ENSGACG00000010476)	ENSGACG00000010481	jdp2b (ENSGACG00000010513)	ENSGACG00000010524	DLST (ENSGACG00000010529)	ENSGACG00000010545	YLPM1 (ENSGACG00000010546)	esrrb (ENSGACG00000010561)	TGFB3 (ENSGACG00000010565)	FLVCR2 (ENSGACG00000010588)	batf (ENSGACG00000010594)	zc3h14 (ENSGACG00000010599)	ptk2bb (ENSGACG00000010609) #22	CHRNA2 (ENSGACG00000010624) #23	cfap20 (ENSGACG00000010649)	ENSGACG00000010660	nme6 (ENSGACG00000010663)	ENSGACG00000010677	eif2b4 (ENSGACG00000010680)	atraid (ENSGACG00000010698)	snx17 (ENSGACG00000010719)	znf513a (ENSGACG00000010769)	ENSGACG00000010773	ENSGACG00000010774	ENSGACG00000010779	ENSGACG00000010781	FNDC4 (ENSGACG00000010791)	ENSGACG00000010799
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Channel bull blenny	MODERN SPECIES	16	ENSCGOG00000021281	fam167ab (ENSCGOG00000021279)	ccm2 (ENSCGOG00000021269)	xkr6b (ENSCGOG00000021266)	mtmr9 (ENSCGOG00000021186)	tdh (ENSCGOG00000021146)	pinx1 (ENSCGOG00000021142)	sox7 (ENSCGOG00000021141)	ENSCGOG00000015653	FNDC4 (ENSCGOG00000015463)	ENSCGOG00000015448	ENSCGOG00000015437	znf513a (ENSCGOG00000015434)	zc3h14 (ENSCGOG00000015427)	ENSCGOG00000015425	ptk2bb (ENSCGOG00000014104) #22	CHRNA2 (ENSCGOG00000014067) #23	ENSCGOG00000014063	nme6 (ENSCGOG00000014060)	eif2b4 (ENSCGOG00000013795)	atraid (ENSCGOG00000014050)	snx17 (ENSCGOG00000013651)	batf (ENSCGOG00000013647)	ENSCGOG00000013254	TGFB3 (ENSCGOG00000013212)	esrrb (ENSCGOG00000013178)	YLPM1 (ENSCGOG00000013163)	ENSCGOG00000013159	DLST (ENSCGOG00000013131)	jdp2b (ENSCGOG00000013123)	ENSCGOG00000013119
Pike perch	MODERN SPECIES	4	fosab (ENSSLUG00000025189)	ENSSLUG00000025193	JDP2 (ENSSLUG00000025202)	ENSSLUG00000025204	DLST (ENSSLUG00000025216)	ENSSLUG00000025235	ENSSLUG00000025239	ENSSLUG00000025243	esrrb (ENSSLUG00000025248)	TGFB3 (ENSSLUG00000025252)	FLVCR2 (ENSSLUG00000025259)	ENSSLUG00000025264	batf (ENSSLUG00000025267)	zc3h14 (ENSSLUG00000003669)	ENSSLUG00000003684	ptk2bb (ENSSLUG00000003692) #22	CHRNA2 (ENSSLUG00000003727) #23	ENSSLUG00000003744	nme6 (ENSSLUG00000003754)	eif2b4 (ENSSLUG00000003789)	atraid (ENSSLUG00000003998)	snx17 (ENSSLUG00000004025)	znf513a (ENSSLUG00000004399)	ENSSLUG00000004409	ENSSLUG00000004420	FNDC4 (ENSSLUG00000004429)	ENSSLUG00000004614	ENSSLUG00000008488	sox7 (ENSSLUG00000008494)	pinx1 (ENSSLUG00000008496)	tdh (ENSSLUG00000008498)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
European seabass	MODERN SPECIES	7	ENSDLAG00005016948	eif2b2 (ENSDLAG00005032222)	tmed10 (ENSDLAG00005010986)	fosab (ENSDLAG00005010958)	ENSDLAG00005010932	ENSDLAG00005026347	ENSDLAG00005010885	ENSDLAG00005027128	ENSDLAG00005010630	ENSDLAG00005010599	ENSDLAG00005010587	ENSDLAG00005029128	ENSDLAG00005028314	ENSDLAG00005010517	ENSDLAG00005027993	ptk2bb (ENSDLAG00005010190) #22	ENSDLAG00005010161 #23	ENSDLAG00005010148	nme6 (ENSDLAG00005010131)	eif2b4 (ENSDLAG00005010066)	atraid (ENSDLAG00005026457)	snx17 (ENSDLAG00005009804)	znf513a (ENSDLAG00005028318)	ENSDLAG00005009766	ENSDLAG00005031523	ENSDLAG00005009733	ENSDLAG00005008340	ENSDLAG00005008296	sox7 (ENSDLAG00005008290)	pinx1 (ENSDLAG00005008277)	tdh (ENSDLAG00005008218)
Large yellow croaker	MODERN SPECIES	482	eif2b2 (ENSLCRG00005013207)	tmed10 (ENSLCRG00005013219)	ENSLCRG00005013223	fosab (ENSLCRG00005013224)	ENSLCRG00005013225	jdp2b (ENSLCRG00005013226)	ENSLCRG00005013227	ENSLCRG00005013228	ENSLCRG00005013229	esrrb (ENSLCRG00005013231)	TGFB3 (ENSLCRG00005013233)	FLVCR2 (ENSLCRG00005013234)	batf (ENSLCRG00005013237)	zc3h14 (ENSLCRG00005013240)	ENSLCRG00005013242	ptk2bb (ENSLCRG00005013244) #22	CHRNA2 (ENSLCRG00005013284) #23	ENSLCRG00005013288	nme6 (ENSLCRG00005013289)	eif2b4 (ENSLCRG00005013295)	atraid (ENSLCRG00005013298)	snx17 (ENSLCRG00005013304)	znf513a (ENSLCRG00005013385)	ENSLCRG00005013386	ENSLCRG00005013389	FNDC4 (ENSLCRG00005013392)	ENSLCRG00005013424	sox7 (ENSLCRG00005016277)	pinx1 (ENSLCRG00005016282)	tdh (ENSLCRG00005016287)	mtmr9 (ENSLCRG00005016294)
Gilthead seabream	MODERN SPECIES	14	tmed10 (ENSSAUG00010008915)	fosab (ENSSAUG00010008920)	ENSSAUG00010008923	jdp2b (ENSSAUG00010008924)	ENSSAUG00010008926	DLST (ENSSAUG00010008933)	ENSSAUG00010009351	YLPM1 (ENSSAUG00010009355)	YLPM1 (ENSSAUG00010009369)	esrrb (ENSSAUG00010009387)	TGFB3 (ENSSAUG00010009390)	FLVCR2 (ENSSAUG00010009399)	batf (ENSSAUG00010009549)	zc3h14 (ENSSAUG00010009551)	ENSSAUG00010009555	ptk2bb (ENSSAUG00010009567) #22	CHRNA2 (ENSSAUG00010009713) #23	ENSSAUG00010009715	nme6 (ENSSAUG00010009716)	eif2b4 (ENSSAUG00010009718)	atraid (ENSSAUG00010009719)	snx17 (ENSSAUG00010009723)	znf513a (ENSSAUG00010010228)	ENSSAUG00010010233	ENSSAUG00010010237	FNDC4 (ENSSAUG00010010243)	ENSSAUG00010010302	ENSSAUG00010012439	sox7 (ENSSAUG00010012441)	pinx1 (ENSSAUG00010012442)	tdh (ENSSAUG00010012445)
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000168254	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00940000154790.b.b	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000161092	ENSGT00940000170880	ENSGT00390000014037.c	ENSGT00940000157818
Fugu	MODERN SPECIES	7	ENSTRUG00000026930	eif2b2 (ENSTRUG00000010849)	tmed10 (ENSTRUG00000010739)	fos (ENSTRUG00000010579)	ENSTRUG00000010431	jdp2b (ENSTRUG00000021670)	ENSTRUG00000010067	ENSTRUG00000028021	esrrb (ENSTRUG00000009721)	TGFB3 (ENSTRUG00000009598)	FLVCR2 (ENSTRUG00000019781)	batf (ENSTRUG00000027959)	zc3h14 (ENSTRUG00000009079)	ENSTRUG00000024798	ENSTRUG00000027910	ptk2bb (ENSTRUG00000008406) #22	CHRNA2 (ENSTRUG00000008002) #23	ENSTRUG00000007980	nme6 (ENSTRUG00000007878)	eif2b4 (ENSTRUG00000007639)	atraid (ENSTRUG00000028410)	snx17 (ENSTRUG00000007272)	znf513a (ENSTRUG00000007237)	ENSTRUG00000007220	ENSTRUG00000023977	FNDC4 (ENSTRUG00000007116)	ENSTRUG00000006468	sox7 (ENSTRUG00000020035)	ENSTRUG00000022897	tdh (ENSTRUG00000006102)	mtmr9 (ENSTRUG00000005696)
Tetraodon	MODERN SPECIES	5	abcd4 (ENSTNIG00000016362)	ENSTNIG00000016361	ENSTNIG00000016360	eif2b2 (ENSTNIG00000016359)	tmed10 (ENSTNIG00000016358)	fosab (ENSTNIG00000016357)	ENSTNIG00000016356	jdp2b (ENSTNIG00000016355)	ENSTNIG00000016354	ENSTNIG00000016353	esrrb (ENSTNIG00000016352)	TGFB3 (ENSTNIG00000016351)	FLVCR2 (ENSTNIG00000016350)	batf (ENSTNIG00000016349)	zc3h14 (ENSTNIG00000016348)	ptk2bb (ENSTNIG00000016347) #22	CHRNA2 (ENSTNIG00000016346) #23	ENSTNIG00000016345	nme6 (ENSTNIG00000016344)	eif2b4 (ENSTNIG00000016343)	atraid (ENSTNIG00000016342)	snx17 (ENSTNIG00000016341)	znf513a (ENSTNIG00000016340)	ENSTNIG00000016339	ENSTNIG00000016338	FNDC4 (ENSTNIG00000016337)	ENSTNIG00000016336	pinx1 (ENSTNIG00000016334)	sox7 (ENSTNIG00000016335)	tdh (ENSTNIG00000016333)	mtmr9 (ENSTNIG00000016332)
Cod	MODERN SPECIES	13	eif2b2 (ENSGMOG00000011032)	tmed10 (ENSGMOG00000011041)	fosab (ENSGMOG00000032190)	ENSGMOG00000011052	ENSGMOG00000011063	ENSGMOG00000025816	DLST (ENSGMOG00000011068)	ENSGMOG00000011081	YLPM1 (ENSGMOG00000011089)	ENSGMOG00000011117	ENSGMOG00000011125	ENSGMOG00000015362	ENSGMOG00000011150	ENSGMOG00000011154	ENSGMOG00000011202 #23	ptk2bb (ENSGMOG00000011174) #22	ENSGMOG00000024131	ENSGMOG00000013065	nme6 (ENSGMOG00000013072)	eif2b4 (ENSGMOG00000013084)	atraid (ENSGMOG00000013100)	ENSGMOG00000013114	ppp2r5cb (ENSGMOG00000015283)	hsp90aa1.2 (ENSGMOG00000015260)	hsp90aa1.1 (ENSGMOG00000015234)	ENSGMOG00000015219	ENSGMOG00000007103	ENSGMOG00000007087	ENSGMOG00000018629	ENSGMOG00000013023	ENSGMOG00000013003
Protacanthopterygii	ANCESTRAL SPECIES	120	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837.u.b	ENSGT00440000039837.u.a	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	369		ENSGT00930000151014.r.d.b	ENSGT00940000154790.b.a.a.a	ENSGT00440000039837.u.a.b	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000159745	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b	ENSGT00550000074908.o	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a.g #22	ENSGT00940000158299.a.d #23	ENSGT00940000160284	ENSGT00550000075009.d	ENSGT00390000017252.h	ENSGT00950000183212.B.c.a	ENSGT00940000158687.a.a.d	ENSGT00940000165084.c	ENSGT00940000165540	ENSGT00390000004923.B.b	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092.c	ENSGT00450000040279	ENSGT00390000014037.c.g
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r.c	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.c.a	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b	ENSGT00550000074908.o	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a.g #22	ENSGT00940000158299.a.d #23	ENSGT00940000160284	ENSGT00550000075009.d	ENSGT00390000017252.h	ENSGT00950000183212.B.c.a	ENSGT00940000158687.a.a.d	ENSGT00940000165084.c	ENSGT00940000165540.c	ENSGT00390000004923.B.b	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000161092.c	ENSGT00450000040279	ENSGT00390000014037.c.g	ENSGT01070000253766.C.o.a.g.a
Salmo	ANCESTRAL SPECIES	12	ENSGT00930000151014.r.c	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01060000250365	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.c.a	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b	ENSGT00550000074908.o	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a.g #22	ENSGT00940000158299.a.d #23	ENSGT00940000160284	ENSGT00550000075009.d	ENSGT00390000017252.h	ENSGT00950000183212.B.c.a	ENSGT00940000158687.a.a.d	ENSGT00940000165084.c	ENSGT00940000165540.c	ENSGT00390000004923.B.b	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000161092.c	ENSGT00450000040279	ENSGT00390000014037.c.g	ENSGT01070000253766.C.o.a.g.a
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000110761	ENSSSAG00000119991	ENSSSAG00000110988	ENSSSAG00000116256	ENSSSAG00000050848	ENSSSAG00000119318	FLVCR2 (ENSSSAG00000121196)	ENSSSAG00000111782	jdp2b (ENSSSAG00000050967)	ENSSSAG00000082404	fosab (ENSSSAG00000109807)	tmed10 (ENSSSAG00000121115)	eif2b2 (ENSSSAG00000051115)	zc3h14 (ENSSSAG00000099908)	ENSSSAG00000051143	ptk2bb (ENSSSAG00000039901) #22	ENSSSAG00000109866 #23	nme6 (ENSSSAG00000051246)	ENSSSAG00000082076	ENSSSAG00000051433	atraid (ENSSSAG00000051574)	snx17 (ENSSSAG00000051601)	ENSSSAG00000052130	znf513a (ENSSSAG00000052120)	ENSSSAG00000094464	ENSSSAG00000052152	ENSSSAG00000052278	sox7 (ENSSSAG00000114290)	ENSSSAG00000092121	pinx1 (ENSSSAG00000083381)	tdh (ENSSSAG00000120478)
River trout	MODERN SPECIES		ENSSTUG00000004293	YLPM1 (ENSSTUG00000004188)	esrrb (ENSSTUG00000004129)	ENSSTUG00000004100	TGFB3 (ENSSTUG00000004067)	ENSSTUG00000004052	FLVCR2 (ENSSTUG00000003627)	batf (ENSSTUG00000003592)	jdp2b (ENSSTUG00000003563)	ENSSTUG00000003557	fosab (ENSSTUG00000003545)	tmed10 (ENSSTUG00000003460)	eif2b2 (ENSSTUG00000003266)	zc3h14 (ENSSTUG00000003212)	ENSSTUG00000003205	ptk2bb (ENSSTUG00000002909) #22	CHRNA2 (ENSSTUG00000002853) #23	ENSSTUG00000002825	nme6 (ENSSTUG00000002810)	eif2b4 (ENSSTUG00000002249)	atraid (ENSSTUG00000002203)	snx17 (ENSSTUG00000001823)	znf513a (ENSSTUG00000001757)	ENSSTUG00000001737	ENSSTUG00000001721	FNDC4 (ENSSTUG00000001700)	ENSSTUG00000001623	ENSSTUG00000001615	sox7 (ENSSTUG00000001611)	pinx1 (ENSSTUG00000001608)	tdh (ENSSTUG00000001594)
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00940000157776.c.a.c	ENSGT00930000151014.r.c	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.d	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b	ENSGT00550000074908.o	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a.g #22	ENSGT00940000158299.a.d #23	ENSGT00940000160284	ENSGT00550000075009.d	ENSGT00390000017252.h	ENSGT00950000183212.B.c.a	ENSGT00940000158687.a.a.d	ENSGT00940000165084.c	ENSGT00940000165540.c	ENSGT00390000004923.B.b	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092.c	ENSGT00450000040279	ENSGT00390000014037.c.g	ENSGT01070000253766.C.o.a.g.a
Oncorhynchus_a	ANCESTRAL SPECIES	65	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01060000250365	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.d	ENSGT00940000159745.c.a	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b	ENSGT00550000074908.o	ENSGT00440000038430	ENSGT00940000173326	ENSGT00940000157269.a.a.g #22	ENSGT00940000158299.a.d #23	ENSGT00940000160284	ENSGT00550000075009.d	ENSGT00390000017252.h	ENSGT00950000183212.B.c.a	ENSGT00940000158687.a.a.d	ENSGT00940000165084.c	ENSGT00940000165540.c	ENSGT00390000004923.B.b	ENSGT00940000165962	ENSGT00940000161092.c	ENSGT00450000040279	ENSGT00390000014037.c.g	ENSGT01070000253766.C.o.a.g.a
Coho salmon	MODERN SPECIES	13	ENSOKIG00005037218	TGFB3 (ENSOKIG00005037277)	ENSOKIG00005037302	FLVCR2 (ENSOKIG00005037342)	ENSOKIG00005037448	ENSOKIG00005037454	ENSOKIG00005037463	BATF (ENSOKIG00005037479)	jdp2b (ENSOKIG00005037560)	ENSOKIG00005037581	fosab (ENSOKIG00005037590)	tmed10 (ENSOKIG00005037610)	eif2b2 (ENSOKIG00005037646)	zc3h14 (ENSOKIG00005037749)	ENSOKIG00005037760	ptk2bb (ENSOKIG00005037944) #22	CHRNA2 (ENSOKIG00005040953) #23	ENSOKIG00005040972	nme6 (ENSOKIG00005040986)	ENSOKIG00005040994	eif2b4 (ENSOKIG00005041038)	atraid (ENSOKIG00005041910)	snx17 (ENSOKIG00005041951)	ENSOKIG00005042462	znf513a (ENSOKIG00005042468)	ENSOKIG00005042477	ENSOKIG00005042491	FNDC4 (ENSOKIG00005042506)	ENSOKIG00005042523	sox7 (ENSOKIG00005042632)	pinx1 (ENSOKIG00005042639)
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000070351	YLPM1 (ENSOMYG00000029570)	ENSOMYG00000059526	ENSOMYG00000029645	FLVCR2 (ENSOMYG00000029756)	ENSOMYG00000062253	JDP2 (ENSOMYG00000029811)	ENSOMYG00000075604	ENSOMYG00000055608	fosab (ENSOMYG00000029885)	tmed10 (ENSOMYG00000058487)	eif2b2 (ENSOMYG00000029925)	zc3h14 (ENSOMYG00000030041)	ENSOMYG00000030088	ENSOMYG00000062435	ptk2bb (ENSOMYG00000030244) #22	ENSOMYG00000030097 #23	ENSOMYG00000073431	ENSOMYG00000072236	ENSOMYG00000072244	nme6 (ENSOMYG00000052641)	ENSOMYG00000057731	eif2b4 (ENSOMYG00000030710)	atraid (ENSOMYG00000030789)	snx17 (ENSOMYG00000030857)	ENSOMYG00000061284	znf513a (ENSOMYG00000030953)	ENSOMYG00000030974	ENSOMYG00000030986	ENSOMYG00000031004	ENSOMYG00000031051
Huchen	MODERN SPECIES	3877																ptk2bb (ENSHHUG00000045383) #22	CHRNA2 (ENSHHUG00000045534) #23
Salmoninae	ANCESTRAL SPECIES	1311																ENSGT00940000157269.a.a.h #22	ENSGT00940000158299.a.c #23	ENSGT00390000013853
Huchen	MODERN SPECIES	3202																ptk2bb (ENSHHUG00000016006) #22	CHRNA2 (ENSHHUG00000015878) #23
Salmoninae_a	ANCESTRAL SPECIES	68	ENSGT00940000154928.c.a.b.b	ENSGT00940000157776.c.a.d	ENSGT00930000151014.r.d.b	ENSGT00940000154790.b.a.a.a	ENSGT00440000039837.u.a.b	ENSGT00940000153433.A.e.f	ENSGT00940000155747.g.b.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000159745.c.b	ENSGT00940000155693.a.a.c.a	ENSGT00940000164930.b.d	ENSGT00940000159276.g	ENSGT00550000074954.p.a	ENSGT00550000074908.p	ENSGT00960000190405	ENSGT00940000157269.a.a.h #22	ENSGT00940000158299.a.c #23	ENSGT00390000013853	ENSGT00550000075009.c	ENSGT00390000017252.g	ENSGT00950000183212.B.c.b	ENSGT00940000158687.a.a.c	ENSGT00940000165084.d	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000154242.a.d	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a
Salmo	ANCESTRAL SPECIES	52	ENSGT00940000154928.c.a.b.b	ENSGT00940000157776.c.a.d	ENSGT00930000151014.r.d.b	ENSGT00940000154790.b.a.a.a	ENSGT00440000039837.u.a.b	ENSGT00940000153433.A.e.f	ENSGT00940000155747.g.b.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000159745.c.b	ENSGT00940000155693.a.a.c.a	ENSGT00940000164930.b.d	ENSGT00940000159276.g	ENSGT00550000074954.p.a	ENSGT00550000074908.p	ENSGT00960000190405	ENSGT00940000157269.a.a.h #22	ENSGT00940000158299.a.c #23	ENSGT00390000013853	ENSGT00550000075009.c	ENSGT00390000017252.g	ENSGT00950000183212.B.c.b	ENSGT00940000158687.a.a.c	ENSGT00940000165084.d	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000154242.a.d	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a
Atlantic salmon	MODERN SPECIES	6	DLST (ENSSSAG00000050787)	ENSSSAG00000085263	ENSSSAG00000102016	YLPM1 (ENSSSAG00000046863)	ENSSSAG00000046852	ENSSSAG00000111561	FLVCR2 (ENSSSAG00000050878)	batf (ENSSSAG00000046729)	jdp2b (ENSSSAG00000046701)	ENSSSAG00000121719	fosab (ENSSSAG00000046644)	ENSSSAG00000046606	ei2bb (ENSSSAG00000046540)	ENSSSAG00000103759	ENSSSAG00000087346	ptk2bb (ENSSSAG00000051167) #22	ENSSSAG00000039537 #23	ENSSSAG00000039427	ENSSSAG00000117530	eif2b4 (ENSSSAG00000039364)	atraid (ENSSSAG00000049017)	snx17 (ENSSSAG00000098194)	znf513a (ENSSSAG00000096983)	ENSSSAG00000048970	ENSSSAG00000088303	arh (ENSSSAG00000086608)	ENSSSAG00000098258	ENSSSAG00000048944	sox7 (ENSSSAG00000055490)	tdh (ENSSSAG00000110070)	mtmr9 (ENSSSAG00000114658)
River trout	MODERN SPECIES	28	DLST (ENSSTUG00000028982)	ENSSTUG00000029044	ENSSTUG00000029051	ENSSTUG00000029054	esrrb (ENSSTUG00000029072)	TGFB3 (ENSSTUG00000029100)	FLVCR2 (ENSSTUG00000029109)	batf (ENSSTUG00000029151)	jdp2b (ENSSTUG00000029161)	ENSSTUG00000029190	fosab (ENSSTUG00000029199)	tmed10 (ENSSTUG00000029204)	eif2b2 (ENSSTUG00000029247)	ENSSTUG00000029309	ENSSTUG00000029319	ptk2bb (ENSSTUG00000029340) #22	CHRNA2 (ENSSTUG00000029722) #23	ENSSTUG00000029773	eif2b4 (ENSSTUG00000029792)	atraid (ENSSTUG00000030152)	snx17 (ENSSTUG00000030172)	znf513a (ENSSTUG00000030187)	ENSSTUG00000030196	ENSSTUG00000030242	ENSSTUG00000030246	ENSSTUG00000030265	sox7 (ENSSTUG00000030285)	tdh (ENSSTUG00000030293)	mtmr9 (ENSSTUG00000030320)	xkr6b (ENSSTUG00000030360)	ccm2 (ENSSTUG00000030373)
Oncorhynchus	ANCESTRAL SPECIES	55	ENSGT00940000154928.c.a.b.b	ENSGT00940000157776.c.a.d	ENSGT00930000151014.r.d.b	ENSGT00940000154790.b.a.a.a	ENSGT00440000039837.u.a.b	ENSGT00940000153433.A.e.f	ENSGT00940000155747.g.b.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000159745.c.b	ENSGT00940000155693.a.a.c.a	ENSGT00940000164930.b.d	ENSGT00940000159276.g	ENSGT00550000074954.p.a	ENSGT00550000074908.p	ENSGT00960000190405	ENSGT00940000157269.a.a.h #22	ENSGT00940000158299.a.c #23	ENSGT00390000013853	ENSGT00550000075009.c	ENSGT00390000017252.g	ENSGT00950000183212.B.c.b	ENSGT00940000158687.a.a.c	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000175432	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a	ENSGT00940000159097
Oncorhynchus_a	ANCESTRAL SPECIES	81	ENSGT00940000155500.f.e	ENSGT00940000154928.c.a.b.b	ENSGT00940000157776.c.a.d	ENSGT00930000151014.r.d.a.a	ENSGT00940000154790.b.a.a.a	ENSGT00440000039837.u.a.b	ENSGT00940000153433.A.e.f	ENSGT00940000155747.g.b.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000159745.c.b	ENSGT00940000155693.a.a.c.a	ENSGT00940000164930.b.d	ENSGT00940000159276.g	ENSGT00550000074954.p.a	ENSGT00550000074908.p	ENSGT00940000157269.a.a.h #22	ENSGT00940000158299.a.c #23	ENSGT00390000013853	ENSGT00550000075009.c	ENSGT00390000017252.g	ENSGT00950000183212.B.c.b	ENSGT00940000158687.a.a.c	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000175432	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a	ENSGT00940000159097
Coho salmon	MODERN SPECIES	3	HMBOX1 (ENSOKIG00005026443)	VSX2 (ENSOKIG00005026433)	DLST (ENSOKIG00005026388)	ENSOKIG00005026377	YLPM1 (ENSOKIG00005026354)	ESRRB (ENSOKIG00005010119)	TGFB3 (ENSOKIG00005010041)	FLVCR2 (ENSOKIG00005009731)	batf (ENSOKIG00005009686)	jdp2b (ENSOKIG00005009659)	ENSOKIG00005009647	fosab (ENSOKIG00005009637)	TMED10 (ENSOKIG00005009599)	eif2b2 (ENSOKIG00005009565)	ENSOKIG00005009552	ptk2bb (ENSOKIG00005009356) #22	CHRNA2 (ENSOKIG00005009268) #23	ENSOKIG00005009255	eif2b4 (ENSOKIG00005009168)	ENSOKIG00005009156	atraid (ENSOKIG00005009141)	snx17 (ENSOKIG00005009051)	znf513a (ENSOKIG00005009029)	ENSOKIG00005009016	FNDC4 (ENSOKIG00005008990)	ENSOKIG00005008980	sox7 (ENSOKIG00005008971)	tdh (ENSOKIG00005008939)	mtmr9 (ENSOKIG00005008912)	ccm2 (ENSOKIG00005008509)	fam167ab (ENSOKIG00005008442)
Rainbow trout	MODERN SPECIES	29	DLST (ENSOMYG00000069400)	ENSOMYG00000002458	YLPM1 (ENSOMYG00000073604)	ENSOMYG00000054627	ENSOMYG00000064812	ENSOMYG00000070180	FLVCR2 (ENSOMYG00000002311)	batf (ENSOMYG00000064037)	jdp2b (ENSOMYG00000069154)	ENSOMYG00000002214	fosab (ENSOMYG00000002207)	ENSOMYG00000002189	eif2b2 (ENSOMYG00000002165)	ENSOMYG00000002127	ENSOMYG00000061301	ENSOMYG00000002028 #22	ENSOMYG00000001858 #23	ENSOMYG00000077814	ENSOMYG00000001818	eif2b4 (ENSOMYG00000001797)	atraid (ENSOMYG00000001771)	snx17 (ENSOMYG00000001739)	ENSOMYG00000001680	znf513a (ENSOMYG00000001662)	ENSOMYG00000057197	ENSOMYG00000061203	ENSOMYG00000052919	sox7 (ENSOMYG00000048989)	ENSOMYG00000001525	mtmr9 (ENSOMYG00000065344)	XKR6 (ENSOMYG00000072790)
Northern pike	MODERN SPECIES	17		ENSELUG00000004632	ENSELUG00000004741	esrrb (ENSELUG00000004772)	TGFB3 (ENSELUG00000004794)	FLVCR2 (ENSELUG00000004831)	ENSELUG00000004806	ENSELUG00000032144	batf (ENSELUG00000004847)	jdp2b (ENSELUG00000004872)	ENSELUG00000004884	fosab (ENSELUG00000004896)	tmed10 (ENSELUG00000004914)	eif2b2 (ENSELUG00000004938)	zc3h14 (ENSELUG00000005015)	ptk2bb (ENSELUG00000005179) #22	CHRNA2 (ENSELUG00000005219) #23	ENSELUG00000005229	nme6 (ENSELUG00000000147)	eif2b4 (ENSELUG00000005290)	atraid (ENSELUG00000028440)	snx17 (ENSELUG00000005430)	znf513a (ENSELUG00000005489)	ENSELUG00000005524	ENSELUG00000005561	ENSELUG00000005543	FNDC4 (ENSELUG00000005588)	ENSELUG00000005619	ENSELUG00000030164	sox7 (ENSELUG00000005648)	pinx1 (ENSELUG00000005680)
Otomorpha	ANCESTRAL SPECIES	42	ENSGT00940000154832.db.b	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.a	ENSGT00940000165916	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098	ENSGT00940000156540.b	ENSGT00940000160303.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853.d	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B.d	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Otophysi	ANCESTRAL SPECIES	12	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.cb	ENSGT00940000165916.e.b	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e	ENSGT00940000156540.b	ENSGT00940000161329.c	ENSGT00940000160303.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853.d	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B.d	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Characiphysae	ANCESTRAL SPECIES	24							ENSGT00940000156487.bb.a	ENSGT00940000165916.e.a	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e	ENSGT00940000156540.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853.d	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B.d	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Characiphysae_b	ANCESTRAL SPECIES	23							ENSGT00940000156487.bb.a	ENSGT00940000165916.e.a	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e	ENSGT00940000156540.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853.d	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B.d	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Characoidei	ANCESTRAL SPECIES	21	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00390000002089.b	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.a	ENSGT00940000165916.e.a	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e	ENSGT00940000156540.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853.d	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B.d	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	18	ppp1r13bb (ENSAMXG00000020459)	ENSAMXG00000034131	ENSAMXG00000020448	rtn1b (ENSAMXG00000039324)	ppm1ab (ENSAMXG00000041890)	six6b (ENSAMXG00000034914)	six1b (ENSAMXG00000019354)	six4b (ENSAMXG00000019352)	prkchb (ENSAMXG00000019350)	hif1ab (ENSAMXG00000019342)	ENSAMXG00000035283	SGPP1 (ENSAMXG00000032515)	ppp2r5ea (ENSAMXG00000030264)	rhoj (ENSAMXG00000043729)	kcnh5a (ENSAMXG00000019312)	ptk2bb (ENSAMXG00000019303) #22	CHRNA2 (ENSAMXG00000019297) #23	ENSAMXG00000019294	ENSAMXG00000034034	ENSAMXG00000038833	nme6 (ENSAMXG00000030080)	eif2b4 (ENSAMXG00000019282)	atraid (ENSAMXG00000019272)	snx17 (ENSAMXG00000019269)	znf513a (ENSAMXG00000033985)	ENSAMXG00000019266	ENSAMXG00000019264	FNDC4 (ENSAMXG00000030122)	ENSAMXG00000030792	ENSAMXG00000038473	ENSAMXG00000039929
Mexicana tetra	MODERN SPECIES	24	slc5a6b (ENSAMXG00000000643)	cenpo (ENSAMXG00000041101)	TP53I3 (ENSAMXG00000000650)	dnajc5gb (ENSAMXG00000033709)	SLC30A2 (ENSAMXG00000030952)	COQ8A (ENSAMXG00000000668)	TATDN3 (ENSAMXG00000000694)	fuca2 (ENSAMXG00000040132)	ENSAMXG00000000714	GJE1 (ENSAMXG00000000724)	txlnbb (ENSAMXG00000000741)	slc22a3 (ENSAMXG00000000758)	ENSAMXG00000000774	dusp23b (ENSAMXG00000040547)	ENSAMXG00000000792	PTK2B (ENSAMXG00000000798) #22	chrna2a (ENSAMXG00000000805) #23	ephx2 (ENSAMXG00000000817) #24	plaat1l (ENSAMXG00000000847)	ENSAMXG00000037713	FNDC4 (ENSAMXG00000041852)	ENSAMXG00000000857	ENSAMXG00000000862	ENSAMXG00000000865	ENSAMXG00000037055	ENSAMXG00000036679	ENSAMXG00000000872	XKR6 (ENSAMXG00000000875)	fam167aa (ENSAMXG00000034103)	enpp4 (ENSAMXG00000042224)	clic5a (ENSAMXG00000031330)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	170	ppp1r13bb (ENSPNAG00000028253)	atp5mj (ENSPNAG00000028169)	ENSPNAG00000028152	ENSPNAG00000028121	ppm1ab (ENSPNAG00000005168)	six6b (ENSPNAG00000028053)	six1b (ENSPNAG00000028036)	six4b (ENSPNAG00000004294)	prkchb (ENSPNAG00000028009)	hif1ab (ENSPNAG00000004279)	snapc1a (ENSPNAG00000027851)	SGPP1 (ENSPNAG00000027831)	ppp2r5ea (ENSPNAG00000004260)	rhoj (ENSPNAG00000027700)	kcnh5a (ENSPNAG00000027670)	ptk2bb (ENSPNAG00000005382) #22	CHRNA2 (ENSPNAG00000006668) #23	ENSPNAG00000027391	nme6 (ENSPNAG00000027379)	eif2b4 (ENSPNAG00000005962)	atraid (ENSPNAG00000027326)	snx17 (ENSPNAG00000027315)	znf513a (ENSPNAG00000027205)	ENSPNAG00000004885	ENSPNAG00000004736	FNDC4 (ENSPNAG00000027164)	ENSPNAG00000027150	ENSPNAG00000027127	sox7 (ENSPNAG00000027095)	pinx1 (ENSPNAG00000005570)	tdh (ENSPNAG00000027069)
Red-bellied piranha	MODERN SPECIES	64	ENSPNAG00000000345	slc5a6b (ENSPNAG00000007610)	cenpo (ENSPNAG00000000332)	TP53I3 (ENSPNAG00000006504)	dnajc5gb (ENSPNAG00000000326)	SLC30A2 (ENSPNAG00000007587)	COQ8A (ENSPNAG00000007578)	fuca2 (ENSPNAG00000007566)	TATDN3 (ENSPNAG00000007560)	ENSPNAG00000007555	GJE1 (ENSPNAG00000000296)	txlnbb (ENSPNAG00000007548)	slc22a3 (ENSPNAG00000000292)	dusp23b (ENSPNAG00000007543)	ENSPNAG00000007537	PTK2B (ENSPNAG00000000264) #22	chrna2a (ENSPNAG00000007506) #23
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	65	ENSEEEG00000023764	ENSEEEG00000023765	ENSEEEG00000023767	ENSEEEG00000023768	ppm1ab (ENSEEEG00000023772)	six6b (ENSEEEG00000023779)	six1b (ENSEEEG00000023780)	six4b (ENSEEEG00000023782)	prkchb (ENSEEEG00000023784)	hif1ab (ENSEEEG00000023797)	snapc1a (ENSEEEG00000023905)	SGPP1 (ENSEEEG00000023906)	ppp2r5ea (ENSEEEG00000023918)	rhoj (ENSEEEG00000023944)	kcnh5a (ENSEEEG00000023946)	ptk2bb (ENSEEEG00000023948) #22	CHRNA2 (ENSEEEG00000023950) #23	ENSEEEG00000023951	nme6 (ENSEEEG00000023952)	eif2b4 (ENSEEEG00000023953)	atraid (ENSEEEG00000023954)	snx17 (ENSEEEG00000023956)	znf513a (ENSEEEG00000023959)
Electric eel	MODERN SPECIES	60				ENSEEEG00000010404	slc5a6b (ENSEEEG00000010402)	cenpo (ENSEEEG00000010401)	TP53I3 (ENSEEEG00000010400)	dnajc5gb (ENSEEEG00000010399)	COQ8A (ENSEEEG00000010383)	TATDN3 (ENSEEEG00000010354)	fuca2 (ENSEEEG00000010351)	ENSEEEG00000010344	txlnbb (ENSEEEG00000010337)	dusp23b (ENSEEEG00000010336)	ENSEEEG00000010335	PTK2B (ENSEEEG00000010024) #22	chrna2a (ENSEEEG00000010002) #23	ephx2 (ENSEEEG00000009997) #24	plaat1l (ENSEEEG00000009994)	ENSEEEG00000009991	FNDC4 (ENSEEEG00000009987)	ENSEEEG00000009984	ENSEEEG00000009981	ENSEEEG00000009979	ENSEEEG00000009978	ENSEEEG00000009977	XKR6 (ENSEEEG00000009976)	fam167aa (ENSEEEG00000009975)	enpp4 (ENSEEEG00000009974)	clic5a (ENSEEEG00000009973)	runx2a (ENSEEEG00000009920)
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	17	ppp1r13b (ENSIPUG00000017609)	atp5mj (ENSIPUG00000017590)	ENSIPUG00000017584	rtn1b (ENSIPUG00000017525)	ppm1ab (ENSIPUG00000017490)	six6b (ENSIPUG00000017480)	six1b (ENSIPUG00000017473)	six4b (ENSIPUG00000017456)	Prkch (ENSIPUG00000017377)	hif1ab (ENSIPUG00000017139)	snapc1a (ENSIPUG00000017089)	SGPP1 (ENSIPUG00000017055)	PPP2R5E (ENSIPUG00000016934)	rhoj (ENSIPUG00000016909)	kcnh5a (ENSIPUG00000016865)	ptk2bb (ENSIPUG00000016732) #22	CHRNA2 (ENSIPUG00000016668) #23	ENSIPUG00000016650	nme6 (ENSIPUG00000016631)	eif2b4 (ENSIPUG00000016608)	atraid (ENSIPUG00000016600)	snx17 (ENSIPUG00000016460)	znf513a (ENSIPUG00000016418)	ENSIPUG00000016373	ENSIPUG00000016347	fndc4 (ENSIPUG00000016337)	Blk (ENSIPUG00000016297)	sox7 (ENSIPUG00000016283)	Pinx1 (ENSIPUG00000016224)	tdh (ENSIPUG00000016165)	mtmr9 (ENSIPUG00000016118)
Channel catfish	MODERN SPECIES	28	ENSIPUG00000003489	ENSIPUG00000003500	slc5a6b (ENSIPUG00000003525)	cenpo (ENSIPUG00000003542)	tp53i3 (ENSIPUG00000003559)	dnajc5gb (ENSIPUG00000003566)	SLC30A2 (ENSIPUG00000003578)	adck3 (ENSIPUG00000003643)	TATDN3 (ENSIPUG00000003695)	FUCA2 (ENSIPUG00000003736)	ENSIPUG00000003762	GJE1 (ENSIPUG00000003805)	txlnbb (ENSIPUG00000003811)	dusp23b (ENSIPUG00000003826)	ENSIPUG00000003843	PTK2B (ENSIPUG00000003887) #22	chrna2a (ENSIPUG00000004069) #23	ephx2 (ENSIPUG00000004085) #24	plaat1l (ENSIPUG00000004135)	ZNF513 (ENSIPUG00000004152)	Fndc4 (ENSIPUG00000004165)	gckr (ENSIPUG00000004194)	ENSIPUG00000004220	ENSIPUG00000004233	c9h8orf74 (ENSIPUG00000004249)	ENSIPUG00000004258	XKR6 (ENSIPUG00000004268)	fam167aa (ENSIPUG00000004271)	enpp4 (ENSIPUG00000004279)	Clic5 (ENSIPUG00000004294)	runx2 (ENSIPUG00000004334)
Cyprinoidei	ANCESTRAL SPECIES	11	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00940000174626.b	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.b	ENSGT00940000165916.f	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e.b	ENSGT00940000156540.b	ENSGT00940000161329.c	ENSGT00940000160303.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853.d	ENSGT00940000160284	ENSGT00550000075009	ENSGT00390000017252	ENSGT00950000183212.B.b.a	ENSGT00940000158687.a.a	ENSGT00940000165084	ENSGT00940000165540	ENSGT00390000004923.B.d	ENSGT00940000165962	ENSGT00940000154242.a.d	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	12	atp5mj (ENSDARG00000092873)	ENSDARG00000091135	rtn1b (ENSDARG00000021143)	ENSDARG00000092770	ppm1ab (ENSDARG00000043250)	six6b (ENSDARG00000031316)	six1b (ENSDARG00000026473)	six4b (ENSDARG00000031983)	prkchb (ENSDARG00000043243)	hif1ab (ENSDARG00000034293)	snapc1a (ENSDARG00000029569)	ENSDARG00000079369	ppp2r5ea (ENSDARG00000015474)	rhoj (ENSDARG00000020250)	kcnh5a (ENSDARG00000043220)	ptk2bb (ENSDARG00000039577) #22	CHRNA2 (ENSDARG00000057025) #23	ENSDARG00000089549	nme6 (ENSDARG00000016138)	atraid (ENSDARG00000043388)	eif2b4 (ENSDARG00000014004)	ENSDARG00000116471	snx17 (ENSDARG00000091418)	znf513a (ENSDARG00000019961)	ENSDARG00000020284	ENSDARG00000043394	FNDC4 (ENSDARG00000043396)	ENSDARG00000007783	ENSDARG00000088377	sox7 (ENSDARG00000030125)	pinx1 (ENSDARG00000023532)
Zebrafish	MODERN SPECIES	8	ANKRD66 (ENSDARG00000090489)	slc5a6b (ENSDARG00000014599)	cenpo (ENSDARG00000075619)	TP53I3 (ENSDARG00000106158)	dnajc5gb (ENSDARG00000017687)	COQ8A (ENSDARG00000032426)	TATDN3 (ENSDARG00000044072)	fuca2 (ENSDARG00000044073)	ENSDARG00000018773	GJE1 (ENSDARG00000053062)	txlnbb (ENSDARG00000076241)	slc22a3 (ENSDARG00000058775)	dusp23b (ENSDARG00000089245)	ENSDARG00000109527	ENSDARG00000088631	PTK2B (ENSDARG00000022841) #22	chrna2a (ENSDARG00000006602) #23	ephx2 (ENSDARG00000040255) #24	plaat1l (ENSDARG00000074014)	ZNF513 (ENSDARG00000101203)	ENSDARG00000086620	FNDC4 (ENSDARG00000009949)	ENSDARG00000040258	ENSDARG00000089458	ENSDARG00000075206	XKR6 (ENSDARG00000020443)	ENSDARG00000102580	fam167aa (ENSDARG00000067665)	enpp4 (ENSDARG00000006877)	clic5a (ENSDARG00000075993)	runx2a (ENSDARG00000040261)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	101	ENSGT00940000153463.a.c.b.b	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000174626.a	ENSGT00940000155077.u.b	ENSGT00940000154832.db.a.a	ENSGT00940000160091.f.b.a	ENSGT00940000156487.bb.a.a	ENSGT00940000165916.e.a.b	ENSGT00940000158220.p.a	ENSGT00940000156774.ib.b	ENSGT00940000158836.a.b.a	ENSGT01030000234620.a.b.a.k.a	ENSGT00940000159098.e.b.a.a	ENSGT00940000156540.b.b	ENSGT00940000157269.a.a.s.a #22	ENSGT00940000158299.a.b #23	ENSGT00390000013853.d.a.a	ENSGT00950000182996.b.a.a.b.d.a.f.b.a.b.a	ENSGT00550000075009.b	ENSGT00390000017252.f	ENSGT00950000183212.B.b.a.a	ENSGT00940000158687.a.a.a	ENSGT00940000165084.f	ENSGT00940000165540.a	ENSGT00390000004923.B.d.a	ENSGT00940000165962.a	ENSGT00940000154242.a.d	ENSGT00940000161092.b	ENSGT00450000040279.n	ENSGT00940000170880
Goldfish	MODERN SPECIES	2148													ENSCARG00000060225	kcnh5a (ENSCARG00000060247)	ENSCARG00000057108	ptk2bb (ENSCARG00000057156) #22	CHRNA2 (ENSCARG00000058260) #23	ENSCARG00000058267	ENSCARG00000058320	ENSCARG00000058321
Cyprininae_a	ANCESTRAL SPECIES	34	ENSGT00950000182772.A.a.b.`b.b.j	ENSGT00940000153463.a.c.b.b	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000155077.u.b	ENSGT00940000154832.db.a.a	ENSGT00940000160091.f.b.a	ENSGT00940000156487.bb.a.a	ENSGT00940000165916.e.a.b	ENSGT00940000158220.p.a	ENSGT00940000156774.ib.b	ENSGT00940000158836.a.b.a	ENSGT01030000234620.a.b.a.k.a	ENSGT00940000159098.e.b.a.a	ENSGT00940000156540.b.b	ENSGT00940000157269.a.a.s.a #22	ENSGT00940000158299.a.b #23	ENSGT00390000013853.d.a.a	ENSGT00950000182996.b.a.a.b.d.a.f.b.a.b.a	ENSGT00550000075009.b	ENSGT00390000017252.f	ENSGT00950000183212.B.b.a.a	ENSGT00940000158687.a.a.a	ENSGT00940000165084.f	ENSGT00940000165540.a	ENSGT00390000004923.B.d.a	ENSGT00940000165962.a	ENSGT00940000154242.a.d	ENSGT00940000161092.b	ENSGT00450000040279.n	ENSGT00390000014037.c.a
Common carp reference	MODERN SPECIES	28	brf1b (ENSCCRG00000055583)	ckbb (ENSCCRG00000023971)	ppp1r13bb (ENSCCRG00000027331)	ENSCCRG00000008044	rtn1b (ENSCCRG00000012689)	ppm1ab (ENSCCRG00000012703)	six6b (ENSCCRG00000080206)	six1b (ENSCCRG00000012712)	six4b (ENSCCRG00000012164)	prkchb (ENSCCRG00000054998)	hif1ab (ENSCCRG00000012389)	ENSCCRG00000012973	ppp2r5ea (ENSCCRG00000012775)	rhoj (ENSCCRG00000078732)	kcnh5a (ENSCCRG00000011674)	ptk2bb (ENSCCRG00000044551) #22	ENSCCRG00000003040 #23	ENSCCRG00000061238	ENSCCRG00000066631	eif2b4 (ENSCCRG00000073913)	atraid (ENSCCRG00000028465)	snx17 (ENSCCRG00000021031)	znf513a (ENSCCRG00000022029)	ENSCCRG00000022004	ENSCCRG00000073123	ENSCCRG00000079422	ENSCCRG00000074331	ENSCCRG00000076834	sox7 (ENSCCRG00000046937)	pinx1 (ENSCCRG00000043804)	tdh (ENSCCRG00000074346)
Golden-line barbel	MODERN SPECIES	884							six6b (ENSSGRG00000036028)	six1b (ENSSGRG00000036019)	six4b (ENSSGRG00000036017)	prkchb (ENSSGRG00000035992)	hif1ab (ENSSGRG00000035779)	ENSSGRG00000035767	ppp2r5ea (ENSSGRG00000035339)	ENSSGRG00000035326	kcnh5a (ENSSGRG00000035323)	ptk2bb (ENSSGRG00000035185) #22	CHRNA2 (ENSSGRG00000035178) #23
Cyprininae	ANCESTRAL SPECIES	121	ENSGT00940000153463.a.c.b.a	ENSGT01100000263794.b	ENSGT00390000002089.b	ENSGT00940000155077.u.a	ENSGT00940000154832.db.a.b	ENSGT00940000160091.f.b.b	ENSGT00940000156487.bb.a.b	ENSGT00940000165916.e.a.a	ENSGT00940000158220.p.b	ENSGT00940000156774.ib.a	ENSGT00390000018691.d	ENSGT00940000158836.a.b.b	ENSGT01030000234620.a.b.a.k.b	ENSGT00940000159098.e.b.b	ENSGT00940000156540.b.a	ENSGT00940000157269.a.a.s.b #22	ENSGT00940000158299.a.a #23	ENSGT00390000013853.d.a.b	ENSGT00940000160284.a.a	ENSGT00550000075009.a	ENSGT00390000017252.e	ENSGT00950000183212.B.b.a.b	ENSGT00940000158687.a.a.b	ENSGT00940000165084.e	ENSGT00940000165540.b	ENSGT00390000004923.B.d.b	ENSGT00940000165962.b	ENSGT00940000161092.a	ENSGT00450000040279.m	ENSGT00390000014037.c.b	ENSGT00940000157818.n
Goldfish	MODERN SPECIES	12	RD3L (ENSCARG00000015509)	rtn1b (ENSCARG00000015516)	ppm1ab (ENSCARG00000015535)	six6b (ENSCARG00000015540)	six1b (ENSCARG00000015546)	six4b (ENSCARG00000015549)	prkchb (ENSCARG00000015562)	hif1ab (ENSCARG00000015653)	snapc1a (ENSCARG00000018630)	SGPP1 (ENSCARG00000018644)	ppp2r5ea (ENSCARG00000018693)	RHOJ (ENSCARG00000020157)	kcnh5a (ENSCARG00000020186)	ENSCARG00000020611	ENSCARG00000020616	ptk2bb (ENSCARG00000020648) #22	CHRNA2 (ENSCARG00000020755) #23	CHRNA2 (ENSCARG00000020773) #23	ENSCARG00000020787	nme6 (ENSCARG00000020793)	eif2b4 (ENSCARG00000020821)	atraid (ENSCARG00000020910)	snx17 (ENSCARG00000020924)	znf513a (ENSCARG00000021262)	ENSCARG00000021268	ENSCARG00000021277	ENSCARG00000021288	ENSCARG00000021292	eif5 (ENSCARG00000021315)	enpp5 (ENSCARG00000021380)	sox7 (ENSCARG00000050582)
Cyprininae_a	ANCESTRAL SPECIES	177	ENSGT00950000182772.A.a.b.`b.b.i	ENSGT00940000153463.a.c.b.a	ENSGT01100000263794.b	ENSGT00940000155077.u.a	ENSGT00940000154832.db.a.b	ENSGT00940000160091.f.b.b	ENSGT00940000156487.bb.a.b	ENSGT00940000165916.e.a.a	ENSGT00940000158220.p.b	ENSGT00940000156774.ib.a	ENSGT00390000018691.d	ENSGT00940000158836.a.b.b	ENSGT01030000234620.a.b.a.k.b	ENSGT00940000159098.e.b.b	ENSGT00940000156540.b.a	ENSGT00940000157269.a.a.s.b #22	ENSGT00940000158299.a.a #23	ENSGT00390000013853.d.a.b	ENSGT00940000160284.b	ENSGT00940000160284.a.a	ENSGT00550000075009.a	ENSGT00390000017252.e	ENSGT00950000183212.B.b.a.b	ENSGT00940000158687.a.a.b	ENSGT00940000165084.e	ENSGT00940000165540.b	ENSGT00390000004923.B.d.b	ENSGT00940000165962.b	ENSGT00940000161092.a	ENSGT00450000040279.m	ENSGT00390000014037.c.b
Common carp reference	MODERN SPECIES	34	ppp1r13bb (ENSCCRG00000024077)	ENSCCRG00000073879	ENSCCRG00000022324	rtn1b (ENSCCRG00000008020)	ppm1ab (ENSCCRG00000057816)	six6b (ENSCCRG00000082349)	six1b (ENSCCRG00000079734)	six4b (ENSCCRG00000053055)	prkchb (ENSCCRG00000056510)	hif1ab (ENSCCRG00000010974)	snapc1a (ENSCCRG00000012742)	ENSCCRG00000012746	ppp2r5ea (ENSCCRG00000013038)	rhoj (ENSCCRG00000067801)	kcnh5a (ENSCCRG00000013911)	ptk2bb (ENSCCRG00000003122) #22	ENSCCRG00000045455 #23	ENSCCRG00000028397	nme6 (ENSCCRG00000003006)	eif2b4 (ENSCCRG00000028408)	atraid (ENSCCRG00000077789)	snx17 (ENSCCRG00000080326)	znf513a (ENSCCRG00000057242)	ENSCCRG00000066373	ENSCCRG00000056946	ENSCCRG00000076118	ENSCCRG00000024686	ENSCCRG00000071486	sox7 (ENSCCRG00000016297)	tdh (ENSCCRG00000057503)	mtmr9 (ENSCCRG00000043813)
Golden-line barbel	MODERN SPECIES	110	ckbb (ENSSGRG00000031468)	ppp1r13bb (ENSSGRG00000031387)	ENSSGRG00000031381	rtn1b (ENSSGRG00000031379)	ppm1ab (ENSSGRG00000031363)	six6b (ENSSGRG00000031360)	six1b (ENSSGRG00000031356)	six4b (ENSSGRG00000031355)	prkchb (ENSSGRG00000031273)	hif1ab (ENSSGRG00000030375)	snapc1a (ENSSGRG00000030355)	ENSSGRG00000030354	ppp2r5ea (ENSSGRG00000030332)	rhoj (ENSSGRG00000030331)	kcnh5a (ENSSGRG00000030329)	ptk2bb (ENSSGRG00000029904) #22	CHRNA2 (ENSSGRG00000029889) #23	nme6 (ENSSGRG00000029885)	eif2b4 (ENSSGRG00000029877)	atraid (ENSSGRG00000029875)	snx17 (ENSSGRG00000029676)	znf513a (ENSSGRG00000029674)	ENSSGRG00000029672	ENSSGRG00000029670	ENSSGRG00000029666	ENSSGRG00000029229	ENSSGRG00000029221	sox7 (ENSSGRG00000029218)	pinx1 (ENSSGRG00000029216)	tdh (ENSSGRG00000029193)	mtmr9 (ENSSGRG00000029180)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	42	ENSGT00390000013227.a.a.f	ENSGT00940000156513.a.a.a	ENSGT00550000074816.A.b.b	ENSGT00940000159049.b.h	ENSGT00610000086772	ENSGT00940000154603.A.f.a.g.a	ENSGT00940000155731.b.g	ENSGT00940000164252.a.b.d.a.a	ENSGT00720000108846.a.e.a	ENSGT00940000156512.b.a.a	ENSGT01090000260098.A.j.a	ENSGT00940000157418.b.b	ENSGT00940000155089.`b	ENSGT00940000155237.ob	ENSGT00940000160303.b.j	ENSGT00940000157269.a.a.t.a #22	ENSGT00940000158299.b.a #23	ENSGT00940000158614.h #24	ENSGT00940000156634.b.c	ENSGT00390000004923.B.c.b.a	ENSGT00390000005345.b	ENSGT00940000154242.a.c.c	ENSGT01030000234996	ENSGT00390000014037.d.b	ENSGT01070000253766.C.p.b	ENSGT00940000159097.ab	ENSGT00940000158831	ENSGT00940000156406.a.a	ENSGT00940000160171.a	ENSGT00940000156406.a.b	ENSGT00940000160171.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	8	foxo3a (ENSCARG00000065665)	ENSCARG00000065676	ENSCARG00000065709	ENSCARG00000065842	dnajc5gb (ENSCARG00000065855)	ANKRD66 (ENSCARG00000065861)	ENSCARG00000065864	TATDN3 (ENSCARG00000065875)	ENSCARG00000066030	ENSCARG00000066049	txlnbb (ENSCARG00000066060)	slc22a3 (ENSCARG00000066084)	ENSCARG00000066246	dusp23b (ENSCARG00000066255)	ENSCARG00000066266	PTK2B (ENSCARG00000066302) #22	chrna2a (ENSCARG00000066636) #23	ephx2 (ENSCARG00000066656) #24	plaat1l (ENSCARG00000066667)	ZNF513 (ENSCARG00000066678)	FNDC4 (ENSCARG00000066683)	ENSCARG00000066689	ENSCARG00000066698	ENSCARG00000066700	ENSCARG00000066711	XKR6 (ENSCARG00000066776)	KLHL29 (ENSCARG00000066812)	ppp1r14d (ENSCARG00000006749)	spint1a (ENSCARG00000006774)	ENSCARG00000006793	ENSCARG00000006799
Goldfish	MODERN SPECIES	837																PTK2B (ENSCARG00000047329) #22	chrna2a (ENSCARG00000048981) #23
Cyprininae_a	ANCESTRAL SPECIES	212	ENSGT00940000156513.a.a.b	ENSGT00550000074816.A.b.a	ENSGT00940000161228.d	ENSGT00940000155731.b.h	ENSGT00390000016702	ENSGT00940000161217	ENSGT00940000164252.a.b.d.a.b	ENSGT00940000156072.a.b.d	ENSGT00720000108846.a.e.b	ENSGT00440000035378.d	ENSGT00940000156512.b.a.b	ENSGT01090000260098.A.j.b	ENSGT00940000157418.b.a	ENSGT00940000161329.c	ENSGT00940000160303.b.j	ENSGT00940000157269.a.a.t.a #22	ENSGT00940000158299.b.a #23	ENSGT00940000158614.h #24	ENSGT00940000156634.b.c	ENSGT00940000158687.b.a	ENSGT00390000004923.B.c.b.a	ENSGT00390000005345.b	ENSGT00940000154242.a.c.c	ENSGT01030000234996	ENSGT00390000014037.d.b	ENSGT01070000253766.C.p.b	ENSGT00940000159097.ab	ENSGT00940000158831.c	ENSGT00940000156406.a.a	ENSGT00940000160171.a
Common carp reference	MODERN SPECIES	30	ENSCCRG00000009338	afg1la (ENSCCRG00000057848)	ENSCCRG00000009303	ENSCCRG00000009293	ENSCCRG00000009290	ENSCCRG00000009287	ENSCCRG00000037505	dnajc5gb (ENSCCRG00000064703)	ENSCCRG00000009193	ENSCCRG00000067781	ENSCCRG00000000272	txlnbb (ENSCCRG00000008376)	slc22a3 (ENSCCRG00000008385)	ENSCCRG00000072644	ENSCCRG00000016638	PTK2B (ENSCCRG00000016661) #22	chrna2a (ENSCCRG00000032315) #23	ephx2 (ENSCCRG00000032319) #24	plaat1l (ENSCCRG00000060893)	ENSCCRG00000065156	ENSCCRG00000049383	ENSCCRG00000029251	ENSCCRG00000049407	ENSCCRG00000066470	ENSCCRG00000049423	ENSCCRG00000057451	ENSCCRG00000080712	fam167aa (ENSCCRG00000052911)	enpp4 (ENSCCRG00000072917)	clic5a (ENSCCRG00000049489)	runx2a (ENSCCRG00000039136)
Golden-line barbel	MODERN SPECIES	3248																ENSSGRG00000005594 #22
Cyprininae	ANCESTRAL SPECIES	244	ENSGT00940000159049.b.g	ENSGT00940000154603.A.f.a.h	ENSGT00940000161228.d	ENSGT00940000155731.b.h	ENSGT00390000016702	ENSGT00940000161217	ENSGT00940000164252.a.b.d.a.b	ENSGT00940000156072.a.b.d	ENSGT00720000108846.a.e.b	ENSGT00440000035378.d	ENSGT00940000156512.b.a.b	ENSGT01090000260098.A.j.b	ENSGT00940000157418.b.a	ENSGT00940000161329.c	ENSGT00940000160303.b.i	ENSGT00940000157269.a.a.t.b #22	ENSGT00940000158299.b.b #23	ENSGT00940000158614.g #24	ENSGT00940000156634.b.d	ENSGT00940000158687.b	ENSGT00390000004923.B.c.b.b	ENSGT00390000005345.a	ENSGT00940000154242.a.c.d	ENSGT00390000014037.d.a	ENSGT01070000253766.C.p.a
Goldfish	MODERN SPECIES	36	ENSCARG00000027556	ENSCARG00000027539	slc5a6b (ENSCARG00000027220)	cenpo (ENSCARG00000027187)	TP53I3 (ENSCARG00000027177)	dnajc5gb (ENSCARG00000027169)	SLC30A2 (ENSCARG00000027153)	fuca2 (ENSCARG00000027127)	dusp23b (ENSCARG00000027096)	srp54 (ENSCARG00000027073)	zgc:109986 (ENSCARG00000027018)	srp54 (ENSCARG00000026959)	ENSCARG00000026677	GJE1 (ENSCARG00000026644)	ENSCARG00000026633	PTK2B (ENSCARG00000024947) #22	chrna2a (ENSCARG00000024845) #23	ephx2 (ENSCARG00000024683) #24	plaat1l (ENSCARG00000024664)	ZNF513 (ENSCARG00000024655)	FNDC4 (ENSCARG00000024644)	ENSCARG00000024577	ENSCARG00000024565	ENSCARG00000024551	XKR6 (ENSCARG00000024539)	ENSCARG00000024531	enpp4 (ENSCARG00000024518)	clic5a (ENSCARG00000024508)	supt3h (ENSCARG00000024480)	cdc5l (ENSCARG00000023649)	KLHL29 (ENSCARG00000023420)
Cyprininae_a	ANCESTRAL SPECIES	295															ENSGT00940000160303.b.i	ENSGT00940000157269.a.a.t.b #22	ENSGT00940000158299.b.b #23	ENSGT00940000158614.g #24	ENSGT00940000156634.b.d	ENSGT00940000158687.b.b	ENSGT00390000004923.B.c.b.b	ENSGT00390000005345.a	ENSGT00940000154242.a.c.d	ENSGT00390000014037.d.a	ENSGT01070000253766.C.p.a	ENSGT00940000158831.d	ENSGT00940000156406.a.b	ENSGT00940000160171.b	ENSGT00390000010738	ENSGT00550000074922	ENSGT00940000158824.l.b
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	178	foxo3a (ENSSGRG00000027733)	afg1la (ENSSGRG00000027734)	ENSSGRG00000027737	vsnl1b (ENSSGRG00000027738)	ENSSGRG00000027747	ENSSGRG00000027749	slc5a6b (ENSSGRG00000027759)	cenpo (ENSSGRG00000027905)	SLC30A2 (ENSSGRG00000027906)	fuca2 (ENSSGRG00000027907)	fuca2 (ENSSGRG00000027908)	ENSSGRG00000027911	GJE1 (ENSSGRG00000027914)	txlnbb (ENSSGRG00000027923)	ENSSGRG00000027940	PTK2B (ENSSGRG00000027955) #22	chrna2a (ENSSGRG00000027975) #23	ephx2 (ENSSGRG00000027976) #24	plaat1l (ENSSGRG00000027977)	ZNF513 (ENSSGRG00000027978)	FNDC4 (ENSSGRG00000027979)	ENSSGRG00000027981	ENSSGRG00000027982	ENSSGRG00000027983	XKR6 (ENSSGRG00000027984)	RAB39A (ENSSGRG00000027985)	FAM167A (ENSSGRG00000027986)	enpp4 (ENSSGRG00000027987)	clic5a (ENSSGRG00000027988)	runx2a (ENSSGRG00000027991)	supt3h (ENSSGRG00000028018)
Golden-line barbel	MODERN SPECIES	439	foxo3a (ENSSGRG00000055406)	afg1la (ENSSGRG00000055407)	vsnl1b (ENSSGRG00000055408)	ENSSGRG00000055409	ENSSGRG00000055412	slc5a6b (ENSSGRG00000055413)	cenpo (ENSSGRG00000055414)	TP53I3 (ENSSGRG00000055415)	dnajc5gb (ENSSGRG00000055416)	ENSSGRG00000055417	SLC30A2 (ENSSGRG00000055418)	ENSSGRG00000055420	GJE1 (ENSSGRG00000055421)	dusp23b (ENSSGRG00000055427)	ENSSGRG00000055428	PTK2B (ENSSGRG00000055429) #22	chrna2a (ENSSGRG00000055430) #23	ephx2 (ENSSGRG00000055431) #24	plaat1l (ENSSGRG00000055432)	ZNF513 (ENSSGRG00000055433)	FNDC4 (ENSSGRG00000055434)	ENSSGRG00000055435	ENSSGRG00000055436	ENSSGRG00000055437	ENSSGRG00000055438	ENSSGRG00000055439	FAM167A (ENSSGRG00000055440)	enpp4 (ENSSGRG00000055441)	clic5a (ENSSGRG00000055442)	runx2a (ENSSGRG00000055443)	supt3h (ENSSGRG00000055444)
Common carp reference	MODERN SPECIES	4	vsnl1b (ENSCCRG00000039544)	ENSCCRG00000039546	ENSCCRG00000077579	slc5a6b (ENSCCRG00000068381)	cenpo (ENSCCRG00000037501)	ENSCCRG00000067125	dnajc5gb (ENSCCRG00000073588)	ENSCCRG00000060311	ENSCCRG00000044524	fuca2 (ENSCCRG00000044441)	ENSCCRG00000081216	ENSCCRG00000061704	txlnbb (ENSCCRG00000079934)	dusp23b (ENSCCRG00000008373)	ENSCCRG00000008368	PTK2B (ENSCCRG00000009603) #22	chrna2a (ENSCCRG00000015983) #23	ephx2 (ENSCCRG00000002676) #24	plaat1l (ENSCCRG00000075507)	ENSCCRG00000059470	ENSCCRG00000029255	ENSCCRG00000078176	ENSCCRG00000065265	ENSCCRG00000077292	ENSCCRG00000066440	ENSCCRG00000067696	enpp4 (ENSCCRG00000049485)	clic5a (ENSCCRG00000039099)	runx2a (ENSCCRG00000002729)	supt3h (ENSCCRG00000017396)	cdc5l (ENSCCRG00000020683)
Clupeiformes	ANCESTRAL SPECIES	509											ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098	ENSGT00940000156540.b	ENSGT00940000157269.a.a #22	ENSGT00940000158299.a #23	ENSGT00390000013853.d
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	5	ccr6a (ENSDCDG00000035566)	cep43 (ENSDCDG00000035570)	rnf4 (ENSDCDG00000035572)	ENSDCDG00000035574	emilin1a (ENSDCDG00000035577)	ankef1a (ENSDCDG00000035582)	snap25a (ENSDCDG00000035583)	matn3a (ENSDCDG00000035584)	laptm4a (ENSDCDG00000035585)	PUM2 (ENSDCDG00000035588)	RHOB (ENSDCDG00000035627)	snapc1a (ENSDCDG00000035629)	SGPP1 (ENSDCDG00000035631)	rhoj (ENSDCDG00000035634)	kcnh5a (ENSDCDG00000035638)	ptk2bb (ENSDCDG00000035654) #22	CHRNA2 (ENSDCDG00000035666) #23	ENSDCDG00000035669	ENSDCDG00000035670	eif2b4 (ENSDCDG00000035672)	atraid (ENSDCDG00000035673)	snx17 (ENSDCDG00000035676)	znf513a (ENSDCDG00000035692)	ENSDCDG00000035697	ENSDCDG00000035701	FNDC4 (ENSDCDG00000035704)	eif5 (ENSDCDG00000035708)	enpp5 (ENSDCDG00000035714)	fam167ab (ENSDCDG00000035715)	ccm2 (ENSDCDG00000035720)	xkr6b (ENSDCDG00000020568)
Denticle herring	MODERN SPECIES		pnn (ENSDCDG00000015462)	ENSDCDG00000015460	ENSDCDG00000015457	ENSDCDG00000015452	LRFN5 (ENSDCDG00000015445)	jkamp (ENSDCDG00000015442)	GPR135 (ENSDCDG00000015441)	ENSDCDG00000015440	ENSDCDG00000015434	sdsl (ENSDCDG00000015433)	ENSDCDG00000015432	ENSDCDG00000015431	ENSDCDG00000015424	plaat1l (ENSDCDG00000015418)	ENSDCDG00000015417	PTK2B (ENSDCDG00000015072) #22	GJE1 (ENSDCDG00000015050)	txlnbb (ENSDCDG00000015046)	DCTN1 (ENSDCDG00000004926)	ENSDCDG00000004744	OTOF (ENSDCDG00000004576)	metap1 (ENSDCDG00000004459)	adh8a (ENSDCDG00000004391)	elavl2 (ENSDCDG00000004298)	SHPRH (ENSDCDG00000004007)	CAAP1 (ENSDCDG00000003981)	ENSDCDG00000003979	PTPRD (ENSDCDG00000034628)	TYRP1 (ENSDCDG00000034559)	LURAP1L (ENSDCDG00000034558)	MPDZ (ENSDCDG00000034214)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	6	ENSCHAG00000016295	rtn1b (ENSCHAG00000016317)	ppm1ab (ENSCHAG00000016514)	ENSCHAG00000016715	six6b (ENSCHAG00000016726)	six1b (ENSCHAG00000016735)	six4b (ENSCHAG00000002381)	prkchb (ENSCHAG00000002501)	hif1ab (ENSCHAG00000003747)	snapc1a (ENSCHAG00000008951)	SGPP1 (ENSCHAG00000008969)	ppp2r5ea (ENSCHAG00000009020)	ENSCHAG00000010077	rhoj (ENSCHAG00000010084)	kcnh5a (ENSCHAG00000010128)	ptk2bb (ENSCHAG00000010265) #22	CHRNA2 (ENSCHAG00000011680) #23	ENSCHAG00000011835	nme6 (ENSCHAG00000011843)	eif2b4 (ENSCHAG00000011853)	atraid (ENSCHAG00000012403)	snx17 (ENSCHAG00000012413)	znf513a (ENSCHAG00000012548)	ENSCHAG00000012552	ENSCHAG00000012561	FNDC4 (ENSCHAG00000012575)	ENSCHAG00000012583	ENSCHAG00000012738	sox7 (ENSCHAG00000012750)	pinx1 (ENSCHAG00000012778)	tdh (ENSCHAG00000012977)
Atlantic herring	MODERN SPECIES	5	ENSCHAG00000012316	cenpo (ENSCHAG00000012337)	TP53I3 (ENSCHAG00000012349)	dusp23b (ENSCHAG00000012358)	ENSCHAG00000012384	slc22a3 (ENSCHAG00000012724)	ENSCHAG00000012756	txlnbb (ENSCHAG00000012767)	GJE1 (ENSCHAG00000012894)	ENSCHAG00000012919	fuca2 (ENSCHAG00000013008)	TATDN3 (ENSCHAG00000013025)	COQ8A (ENSCHAG00000013153)	SLC30A2 (ENSCHAG00000013704)	dnajc5gb (ENSCHAG00000013827)	PTK2B (ENSCHAG00000013842) #22	chrna2a (ENSCHAG00000014019) #23	ephx2 (ENSCHAG00000014055) #24	plaat1l (ENSCHAG00000014143)	ENSCHAG00000014152	FNDC4 (ENSCHAG00000014168)	ENSCHAG00000014184	ENSCHAG00000014556	ENSCHAG00000014563	ENSCHAG00000014584	XKR6 (ENSCHAG00000014777)	maco1b (ENSCHAG00000014785)	ldlrap1b (ENSCHAG00000014877)	ENSCHAG00000014909	FNDC5 (ENSCHAG00000014911)	olig4 (ENSCHAG00000014918)
Spotted gar	MODERN SPECIES	647	TDRP (ENSLOCG00000017226)	fbxo25 (ENSLOCG00000017227)	ENSLOCG00000017229	SH3YL1 (ENSLOCG00000017230)	ACP1 (ENSLOCG00000017231)	alkal2b (ENSLOCG00000017232)	tmem18 (ENSLOCG00000017233)	zgc:194392 (ENSLOCG00000017234)	ENSLOCG00000017235	si:dkey-119f1.1 (ENSLOCG00000017236)	GEN1 (ENSLOCG00000017237)	msgn1 (ENSLOCG00000017878)	si:ch211-51e12.7 (ENSLOCG00000017238)	mrps10 (ENSLOCG00000017239)	TRERF1 (ENSLOCG00000017240)	ptk2bb (ENSLOCG00000017241) #22	chrna2a (ENSLOCG00000017242) #23	SLC35F1 (ENSLOCG00000017243)	si:dkeyp-114g9.1 (ENSLOCG00000017244)	CEP85L (ENSLOCG00000017245)	mcm9 (ENSLOCG00000017246)	fam184aa (ENSLOCG00000017247)	MAN1A1 (ENSLOCG00000017248)	ENSLOCG00000017249	ENSLOCG00000017250	tbc1d32 (ENSLOCG00000017251)	hsdl1 (ENSLOCG00000017252)	gja11 (ENSLOCG00000017879)	gja11 (ENSLOCG00000017253)	gja11 (ENSLOCG00000017254)	gja1b (ENSLOCG00000017880)
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000157269.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000157269.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000157269.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157269.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000157269.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000157269.a.b ##22
Acanthomorphata	ANCESTRAL SPECIES	301												ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00390000009987
Cod	MODERN SPECIES	17	irs2a (ENSGMOG00000026587)	ENSGMOG00000012843	ENSGMOG00000022586	ENSGMOG00000030958	ENSGMOG00000026759	ENSGMOG00000034826	ENSGMOG00000036249	ENSGMOG00000025281	ENSGMOG00000032028	ENSGMOG00000028063	ENSGMOG00000035792	ENSGMOG00000033183	tubgcp3 (ENSGMOG00000006639)	ENSGMOG00000000064	arhgef7b (ENSGMOG00000004297)	ENSGMOG00000004240 ##22	ENSGMOG00000004192	ENSGMOG00000004171	ENSGMOG00000004140	ENSGMOG00000026821	ENSGMOG00000023292	GJA3 (ENSGMOG00000009100)	PSPC1 (ENSGMOG00000015074)	ENSGMOG00000025963	ENSGMOG00000016109	ENSGMOG00000033910	ENSGMOG00000033775	ENSGMOG00000036637	ENSGMOG00000029451	ENSGMOG00000028799	ENSGMOG00000015395
Euacanthomorphacea	ANCESTRAL SPECIES	120				ENSGT01050000244864.B.b.a.a	ENSGT01030000234513.B.b.d	ENSGT00390000003152	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Pinecone sodierfish	MODERN SPECIES	11	ENSMMDG00005002979	NID2 (ENSMMDG00005002949)	rtraf (ENSMMDG00005002921)	GJA3 (ENSMMDG00005002912)	ENSMMDG00005002887	sap18 (ENSMMDG00005002873)	MCF2L (ENSMMDG00005002684)	cab39l (ENSMMDG00005008057)	ENSMMDG00005008052	rcbtb1 (ENSMMDG00005007494)	ENSMMDG00005007486	tubgcp3 (ENSMMDG00005007484)	ATP11A (ENSMMDG00005007477)	SOX1 (ENSMMDG00005007474)	arhgef7b (ENSMMDG00005006783)	ENSMMDG00005006774 ##22	ENSMMDG00005006771	ENSMMDG00005006768	unc50 (ENSMMDG00005006764)	ndufs1 (ENSMMDG00005006598)	ENSMMDG00005006594	ENSMMDG00005006592	ENSMMDG00005006591	ENSMMDG00005006590	ENSMMDG00005006587	anos1a (ENSMMDG00005006575)	STS (ENSMMDG00005006388)	ENSMMDG00005006374	pudp (ENSMMDG00005006371)	nlgn4xa (ENSMMDG00005006218)	PRKX (ENSMMDG00005006207)
Percomorphaceae	ANCESTRAL SPECIES	95							ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.b.b
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000163149.a.a
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000163149.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000163149.a.a
Aplocheiloidei	ANCESTRAL SPECIES	37	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163322.a.a.b	ENSGT00940000163148.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163494.a.b.a
Mangrove rivulus	MODERN SPECIES	132	ENSKMAG00000011945	chst10 (ENSKMAG00000011926)	MAP4K4 (ENSKMAG00000011765)	ENSKMAG00000011694	ENSKMAG00000011652	ENSKMAG00000011510	cab39l (ENSKMAG00000011414)	cdadc1 (ENSKMAG00000011381)	rcbtb1 (ENSKMAG00000011318)	FGF14 (ENSKMAG00000011283)	tubgcp3 (ENSKMAG00000011185)	ENSKMAG00000011159	ATP11A (ENSKMAG00000011106)	SOX1 (ENSKMAG00000011088)	arhgef7b (ENSKMAG00000010994)	ENSKMAG00000010829 ##22	ENSKMAG00000010754	zc3h13 (ENSKMAG00000010701)	ENSKMAG00000010672	ENSKMAG00000010629	cnot9 (ENSKMAG00000010565)	ENSKMAG00000010505	ENSKMAG00000010470	slx9 (ENSKMAG00000010451)	adarb1a (ENSKMAG00000010426)	cep70 (ENSKMAG00000010395)	sowahcb (ENSKMAG00000010375)	AIFM2 (ENSKMAG00000010356)	ENSKMAG00000010342	ENSKMAG00000010325
Turquoise killifish	MODERN SPECIES	1615	ENSNFUG00015017980	SGPP2 (ENSNFUG00015017981)	ENSNFUG00015017982	pax3b (ENSNFUG00015017989)	ENSNFUG00015018042	ENSNFUG00015018044	EPHA4A (ENSNFUG00015018163)	ENSNFUG00015021857	ENSNFUG00015021860	TAPT1B (ENSNFUG00015021866)	ENSNFUG00015022037	ENSNFUG00015022040	ENSNFUG00015022043	ENSNFUG00015022046	ARHGEF7B (ENSNFUG00015022093)	ENSNFUG00015022561 ##22	ENSNFUG00015023122	UNC50 (ENSNFUG00015023127)	ndufs1 (ENSNFUG00015023135)	creb3l1 (ENSNFUG00015023195)	ENSNFUG00015023208	ATG13 (ENSNFUG00015023214)	ENSNFUG00015023234	CACNB4 (ENSNFUG00015023293)	ETV5 (ENSNFUG00015024029)	ENSNFUG00015024040	ENSNFUG00015024062	ENSNFUG00015024063	ENSNFUG00015024065	ENSNFUG00015024068	crygmxl1 (ENSNFUG00015024070)
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000163149.a.a
NAME_4	ANCESTRAL SPECIES	76	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163322.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163148.a.b.a
Sheepshead minnow	MODERN SPECIES	483												tubgcp3 (ENSCVAG00000009147)	ATP11A (ENSCVAG00000009014)	SOX1 (ENSCVAG00000008751)	arhgef7b (ENSCVAG00000008741)	ENSCVAG00000008623 ##22	ENSCVAG00000008574	unc50 (ENSCVAG00000008554)	ndufs1 (ENSCVAG00000008532)	zgc:110699 (ENSCVAG00000008506)	creb3l1 (ENSCVAG00000008486)	ENSCVAG00000008455	atg13 (ENSCVAG00000008442)	kpnb3 (ENSCVAG00000008335)	SEMA5B (ENSCVAG00000008245)	CACNB4 (ENSCVAG00000008167)	etv5b (ENSCVAG00000008113)	ENSCVAG00000008082	ENSCVAG00000008078	ENSCVAG00000008068	ENSCVAG00000008053
Mummichog	MODERN SPECIES	980	rpl31 (ENSFHEG00000020810)	chst10 (ENSFHEG00000020855)	MAP4K4 (ENSFHEG00000021093)	ENSFHEG00000021225	RDX (ENSFHEG00000021311)	ENSFHEG00000021320	ENSFHEG00000021973	cab39l (ENSFHEG00000022080)	cdadc1 (ENSFHEG00000022087)	rcbtb1 (ENSFHEG00000000545)	FGF14 (ENSFHEG00000022154)	tubgcp3 (ENSFHEG00000022234)	ATP11A (ENSFHEG00000022327)	SOX1 (ENSFHEG00000022335)	arhgef7b (ENSFHEG00000022472)	ENSFHEG00000022659 ##22	ENSFHEG00000022674	unc50 (ENSFHEG00000022689)	ndufs1 (ENSFHEG00000022721)	zgc:110699 (ENSFHEG00000022741)	creb3l1 (ENSFHEG00000022751)	HARBI1 (ENSFHEG00000022776)	atg13 (ENSFHEG00000022890)	kpnb3 (ENSFHEG00000023049)	SEMA5B (ENSFHEG00000023118)	CACNB4 (ENSFHEG00000023188)	etv5b (ENSFHEG00000023203)	crygs3 (ENSFHEG00000023224)	ENSFHEG00000002435	ENSFHEG00000002439	crygmxl1 (ENSFHEG00000002478)
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000164501.a.a.a.a.b
Poecilia	ANCESTRAL SPECIES	30	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000163149.a.a
NAME_6	ANCESTRAL SPECIES	58	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b	ENSGT00940000163149.a.a
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	424	zc3h13 (ENSPFOG00000005039)	rpl31 (ENSPFOG00000005045)	chst10 (ENSPFOG00000005122)	MAP4K4 (ENSPFOG00000005245)	ENSPFOG00000005817	RDX (ENSPFOG00000005891)	MCF2L (ENSPFOG00000006017)	cab39l (ENSPFOG00000006848)	cdadc1 (ENSPFOG00000006959)	rcbtb1 (ENSPFOG00000007065)	ENSPFOG00000007177	tubgcp3 (ENSPFOG00000007253)	ATP11A (ENSPFOG00000007727)	SOX1 (ENSPFOG00000008756)	arhgef7b (ENSPFOG00000008784)	ENSPFOG00000009145 ##22	ENSPFOG00000009665	unc50 (ENSPFOG00000009782)	ndufs1 (ENSPFOG00000009828)
Amazon molly	MODERN SPECIES	61																ENSPFOG00000022091 ##22
Sailfin molly	MODERN SPECIES	848											FGF14 (ENSPLAG00000013175)	tubgcp3 (ENSPLAG00000013161)	ATP11A (ENSPLAG00000013107)	SOX1 (ENSPLAG00000012948)	arhgef7b (ENSPLAG00000012932)	ENSPLAG00000012873 ##22
Guppy	MODERN SPECIES	450	rpl31 (ENSPREG00000010564)	chst10 (ENSPREG00000010751)	MAP4K4 (ENSPREG00000010791)	ENSPREG00000010838	RDX (ENSPREG00000010856)	MCF2L (ENSPREG00000010906)	cab39l (ENSPREG00000011055)	cdadc1 (ENSPREG00000011072)	rcbtb1 (ENSPREG00000011094)	ENSPREG00000011113	FGF14 (ENSPREG00000011119)	tubgcp3 (ENSPREG00000011155)	ATP11A (ENSPREG00000011298)	SOX1 (ENSPREG00000011495)	arhgef7b (ENSPREG00000011503)	ENSPREG00000011543 ##22	unc50 (ENSPREG00000011559)	ENSPREG00000011576	ndufs1 (ENSPREG00000011596)	zgc:110699 (ENSPREG00000011654)	creb3l1 (ENSPREG00000011677)	ENSPREG00000011695	atg13 (ENSPREG00000011716)	kpnb3 (ENSPREG00000011796)	SEMA5B (ENSPREG00000011906)	CACNB4 (ENSPREG00000011944)	etv5b (ENSPREG00000012003)	crygs3 (ENSPREG00000012018)	ENSPREG00000012027	ENSPREG00000012039	ENSPREG00000012045
Platyfish	MODERN SPECIES	16	MAP4K4 (ENSXMAG00000012364)	ENSXMAG00000027171	RDX (ENSXMAG00000012314)	MCF2L (ENSXMAG00000012216)	cab39l (ENSXMAG00000017334)	cdadc1 (ENSXMAG00000012166)	rcbtb1 (ENSXMAG00000013757)	ENSXMAG00000026344 #16	ENSXMAG00000021861 #16	ENSXMAG00000021122	ENSXMAG00000012158	tubgcp3 (ENSXMAG00000026366)	ATP11A (ENSXMAG00000012027)	SOX1 (ENSXMAG00000019447)	arhgef7b (ENSXMAG00000004492)	ENSXMAG00000004406 ##22	ENSXMAG00000025674	unc50 (ENSXMAG00000023458)	ndufs1 (ENSXMAG00000004367)	zgc:110699 (ENSXMAG00000004365)	creb3l1 (ENSXMAG00000004363)	HARBI1 (ENSXMAG00000024171)	atg13 (ENSXMAG00000004349)	kpnb3 (ENSXMAG00000004307)	SEMA5B (ENSXMAG00000004276)	CACNB4 (ENSXMAG00000004242)	etv5b (ENSXMAG00000026320)	crygs3 (ENSXMAG00000015731)	ENSXMAG00000027613	ENSXMAG00000021580	ENSXMAG00000029114
Oryzias	ANCESTRAL SPECIES	26	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b	ENSGT00940000156271	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00530000063970.f.db.a	ENSGT00940000164706.a	ENSGT00940000171594	ENSGT00950000183152.B.c.a	ENSGT00510000047027.c.a	ENSGT00950000183034.A.g	ENSGT00940000156167.a
Oryzias_b	ANCESTRAL SPECIES	86														ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00530000063970.f.db.a	ENSGT00940000164706.a	ENSGT00940000171594	ENSGT00950000183152.B.c.a	ENSGT00510000047027.c.a	ENSGT00950000183034.A.g	ENSGT00940000156167.a
Indian medaka	MODERN SPECIES	103													ANKRD50 (ENSOMEG00000009495)	SOX1 (ENSOMEG00000009509)	arhgef7b (ENSOMEG00000009571)	ENSOMEG00000009639 ##22	ENSOMEG00000009658	unc50 (ENSOMEG00000000237)	ndufs1 (ENSOMEG00000009803)	ENSOMEG00000009830	creb3l1 (ENSOMEG00000009850)	HARBI1 (ENSOMEG00000009868)	atg13 (ENSOMEG00000010014)	kpnb3 (ENSOMEG00000010107)	ENSOMEG00000010136	ENSOMEG00000010146	prph2lb (ENSOMEG00000010160)	ckbb (ENSOMEG00000010183)	ENSOMEG00000010190	ENSOMEG00000010195	ccr6a (ENSOMEG00000010197)
Javanese ricefish	MODERN SPECIES	11	rpl23 (ENSOJAG00000002432)	ENSOJAG00000002469	ENSOJAG00000002499	ENSOJAG00000002509	timm29 (ENSOJAG00000002517)	yipf2 (ENSOJAG00000002524)	mettl22 (ENSOJAG00000002545)	ENSOJAG00000002557	smarce1 (ENSOJAG00000002581)	ENSOJAG00000002654	mpp2a (ENSOJAG00000002847)	nags (ENSOJAG00000002969)	CDK5R1 (ENSOJAG00000002994)	nsfa (ENSOJAG00000003048)	SOX1 (ENSOJAG00000003234)	ENSOJAG00000003544 ##22	ENSOJAG00000004002	unc50 (ENSOJAG00000004033)	ENSOJAG00000004592	creb3l1 (ENSOJAG00000004635)	atg13 (ENSOJAG00000004745)	kpnb3 (ENSOJAG00000004960)	ENSOJAG00000005024	zgc:172122 (ENSOJAG00000005034)	ENSOJAG00000005053	u2af1 (ENSOJAG00000005070)	cbsa (ENSOJAG00000005110)	ENSOJAG00000005689	ENSOJAG00000005714	ENSOJAG00000005811	gart (ENSOJAG00000005857)
Oryzias_a	ANCESTRAL SPECIES	28	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b	ENSGT00940000156271	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00390000007055	ENSGT00940000155502	ENSGT00530000063970.f.db.a	ENSGT00940000164706.a	ENSGT00940000171594	ENSGT00950000183152.B.c.a	ENSGT00510000047027.c.a	ENSGT00950000183034.A.g	ENSGT00940000156167.a	ENSGT01050000244823.d.b.a.b
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000005414	mbnl2 (ENSORLG00000005419)	rap2ab (ENSORLG00000005426)	mrpl39 (ENSORLG00000005447)	ENSORLG00000005481	ENSORLG00000005630	cab39l (ENSORLG00000005654)	cdadc1 (ENSORLG00000005666)	rcbtb1 (ENSORLG00000005672)	ENSORLG00000025753	ENSORLG00000025057	tubgcp3 (ENSORLG00000005732)	ATP11A (ENSORLG00000005793)	ENSORLG00000027672	arhgef7b (ENSORLG00000005832)	ENSORLG00000005884 ##22	ENSORLG00000023138	unc50 (ENSORLG00000005956)	NDUFS1 (ENSORLG00000006003)	zgc:110699 (ENSORLG00000006012)	creb3l1 (ENSORLG00000006015)	atg13 (ENSORLG00000006065)	kpnb3 (ENSORLG00000006133)	ENSORLG00000027164	ENSORLG00000006146	zgc:172122 (ENSORLG00000006159)	ENSORLG00000025289	ENSORLG00000006182	cbsa (ENSORLG00000006194)	ENSORLG00000024129	ENSORLG00000006210
Chinese medaka	MODERN SPECIES	23	abcb6a (ENSOSIG00000000003)	nrp2a (ENSOSIG00000013827)	ENSOSIG00000013793	mbnl2 (ENSOSIG00000013683)	rap2ab (ENSOSIG00000013675)	mrpl39 (ENSOSIG00000013673)	ENSOSIG00000013224	MCF2L (ENSOSIG00000013196)	cab39l (ENSOSIG00000013191)	cdadc1 (ENSOSIG00000013188)	rcbtb1 (ENSOSIG00000013184)	ENSOSIG00000013183	tubgcp3 (ENSOSIG00000013177)	ATP11A (ENSOSIG00000012166)	arhgef7b (ENSOSIG00000012154)	ENSOSIG00000012152 ##22	ENSOSIG00000012151	unc50 (ENSOSIG00000012150)	ndufs1 (ENSOSIG00000011814)	creb3l1 (ENSOSIG00000011813)	atg13 (ENSOSIG00000011810)	kpnb3 (ENSOSIG00000011804)	ENSOSIG00000011803	zgc:172122 (ENSOSIG00000011797)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b
Pomacentridae	ANCESTRAL SPECIES	71	ENSGT00940000155466.e.a	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a.b	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b
Pomacentridae_A	ANCESTRAL SPECIES	224															ENSGT00940000158272.c.a	ENSGT00940000157269.a.b ##22	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b
Amphiprion	ANCESTRAL SPECIES	267															ENSGT00940000158272.c.a	ENSGT00940000157269.a.b ##22	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2739															COL8A1 (ENSAOCG00000009299)	ENSAOCG00000009286 ##22	ENSAOCG00000009238	ENSAOCG00000009228 ##22	unc50 (ENSAOCG00000009211)	ndufs1 (ENSAOCG00000009179)	zgc:110699 (ENSAOCG00000009117)	creb3l1 (ENSAOCG00000009092)	ENSAOCG00000009074	atg13 (ENSAOCG00000009046)	kpnb3 (ENSAOCG00000008927)
Clown anemonefish	MODERN SPECIES	2739													COL8A1 (ENSAOCG00000009299)	ENSAOCG00000009286 ##22	ENSAOCG00000009238	ENSAOCG00000009228 ##22	unc50 (ENSAOCG00000009211)	ndufs1 (ENSAOCG00000009179)	zgc:110699 (ENSAOCG00000009117)	creb3l1 (ENSAOCG00000009092)	ENSAOCG00000009074	atg13 (ENSAOCG00000009046)	kpnb3 (ENSAOCG00000008927)
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000017731	ptger2a (ENSAPEG00000017743)	ENSAPEG00000017748	gpr137c (ENSAPEG00000017784)	acp2 (ENSAPEG00000017795)	irs2a (ENSAPEG00000017808)	lig4 (ENSAPEG00000017815)	NALF1 (ENSAPEG00000017828)	cckbra (ENSAPEG00000017842)	cpo (ENSAPEG00000017869)	nudt15 (ENSAPEG00000017883)	ENSAPEG00000017889	TRAK2 (ENSAPEG00000017902)	STRADB (ENSAPEG00000017941)	COL8A1 (ENSAPEG00000017967)	ENSAPEG00000017980 ##22	ENSAPEG00000018019	unc50 (ENSAPEG00000018044)	ndufs1 (ENSAPEG00000018082)	zgc:110699 (ENSAPEG00000018136)	creb3l1 (ENSAPEG00000018166)	ENSAPEG00000018227	atg13 (ENSAPEG00000018265)	kpnb3 (ENSAPEG00000018395)	SEMA5B (ENSAPEG00000018473)	CACNB4 (ENSAPEG00000018520)	ENSAPEG00000018582	ENSAPEG00000018668	ENSAPEG00000018749	gpd2 (ENSAPEG00000018763)	NR4A2 (ENSAPEG00000018813)
Spiny chromis	MODERN SPECIES	1009												FILIP1L (ENSAPOG00000003756)	ENSAPOG00000003826	ccdc28a (ENSAPOG00000003850)	COL8A1 (ENSAPOG00000003863)	ENSAPOG00000003953 ##22	unc50 (ENSAPOG00000003979)	ndufs1 (ENSAPOG00000004032)	zgc:110699 (ENSAPOG00000004054)	ENSAPOG00000004070	HARBI1 (ENSAPOG00000004094)	atg13 (ENSAPOG00000004174)	kpnb3 (ENSAPOG00000004284)	SEMA5B (ENSAPOG00000004349)	CACNB4 (ENSAPOG00000004443)
Bicolor damselfish	MODERN SPECIES	456		rpl31 (ENSSPAG00000009164)	chst10 (ENSSPAG00000009171)	MAP4K4 (ENSSPAG00000009217)	ENSSPAG00000009485	RDX (ENSSPAG00000009513)	MCF2L (ENSSPAG00000009584)	cab39l (ENSSPAG00000009771)	cdadc1 (ENSSPAG00000009801)	rcbtb1 (ENSSPAG00000009819)	FGF14 (ENSSPAG00000009847)	tubgcp3 (ENSSPAG00000009874)	ATP11A (ENSSPAG00000009986)	SOX1 (ENSSPAG00000010125)	arhgef7b (ENSSPAG00000010140)	ENSSPAG00000010212 ##22	unc50 (ENSSPAG00000010252)	ndufs1 (ENSSPAG00000010291)	ENSSPAG00000010352	zgc:110699 (ENSSPAG00000010365)
Cichlidae	ANCESTRAL SPECIES	30	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000160560.b.f.a.b.a.b	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d
Midas cichlid	MODERN SPECIES	1147													ENSACIG00000015684	ENSACIG00000015616	arhgef7b (ENSACIG00000015564)	ENSACIG00000015502 ##22
Pseudocrenilabrinae	ANCESTRAL SPECIES	25	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b
Nile tilapia	MODERN SPECIES	14	rpl31 (ENSONIG00000033747)	chst10 (ENSONIG00000012254)	MAP4K4 (ENSONIG00000012256)	ENSONIG00000012268	ENSONIG00000012273	MCF2L (ENSONIG00000012277)	cab39l (ENSONIG00000012288)	cdadc1 (ENSONIG00000012296)	rcbtb1 (ENSONIG00000012298)	ENSONIG00000012303	tubgcp3 (ENSONIG00000012305)	ATP11A (ENSONIG00000012309)	SOX1 (ENSONIG00000021020)	ENSONIG00000013227	arhgef7b (ENSONIG00000015169)	ENSONIG00000015175 ##22	ENSONIG00000031938	CACNB4 (ENSONIG00000015177)	SEMA5B (ENSONIG00000015189)	kpnb3 (ENSONIG00000015196)	atg13 (ENSONIG00000015211)	HARBI1 (ENSONIG00000015216)	creb3l1 (ENSONIG00000015219)	zgc:110699 (ENSONIG00000015222)	ndufs1 (ENSONIG00000015225)	unc50 (ENSONIG00000015234)	ENSONIG00000015239	ENSONIG00000015245	ENSONIG00000015241	ENSONIG00000015246	ENSONIG00000032717
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b	ENSGT00940000163322.a.a.b
Lyretail cichlid	DUPLICATION
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	469										ENSNBRG00000020806	ENSNBRG00000020781	ENSNBRG00000020744	arhgef7b (ENSNBRG00000020678)	ENSNBRG00000020650 ##22	ENSNBRG00000020642 ##22	ENSNBRG00000020634 ##22	ENSNBRG00000020543	CACNB4 (ENSNBRG00000020516)	SEMA5B (ENSNBRG00000020483)	ENSNBRG00000020476	atg13 (ENSNBRG00000020464)	HARBI1 (ENSNBRG00000020442)	ENSNBRG00000020397	ENSNBRG00000020379	unc50 (ENSNBRG00000020363)	ENSNBRG00000020278	etv5b (ENSNBRG00000020191)	crygs3 (ENSNBRG00000020172)	ENSNBRG00000020160	ENSNBRG00000020066	ENSNBRG00000020039
Lyretail cichlid	MODERN SPECIES	469											ENSNBRG00000020806	ENSNBRG00000020781	ENSNBRG00000020744	arhgef7b (ENSNBRG00000020678)	ENSNBRG00000020650 ##22	ENSNBRG00000020642 ##22	ENSNBRG00000020634 ##22	ENSNBRG00000020543	CACNB4 (ENSNBRG00000020516)	SEMA5B (ENSNBRG00000020483)	ENSNBRG00000020476	atg13 (ENSNBRG00000020464)	HARBI1 (ENSNBRG00000020442)	ENSNBRG00000020397	ENSNBRG00000020379	unc50 (ENSNBRG00000020363)	ENSNBRG00000020278	etv5b (ENSNBRG00000020191)	crygs3 (ENSNBRG00000020172)	ENSNBRG00000020160	ENSNBRG00000020066
Lyretail cichlid	MODERN SPECIES	469												ENSNBRG00000020806	ENSNBRG00000020781	ENSNBRG00000020744	arhgef7b (ENSNBRG00000020678)	ENSNBRG00000020650 ##22	ENSNBRG00000020642 ##22	ENSNBRG00000020634 ##22	ENSNBRG00000020543	CACNB4 (ENSNBRG00000020516)	SEMA5B (ENSNBRG00000020483)	ENSNBRG00000020476	atg13 (ENSNBRG00000020464)	HARBI1 (ENSNBRG00000020442)	ENSNBRG00000020397	ENSNBRG00000020379	unc50 (ENSNBRG00000020363)	ENSNBRG00000020278	etv5b (ENSNBRG00000020191)	crygs3 (ENSNBRG00000020172)	ENSNBRG00000020160
Haplochromini	ANCESTRAL SPECIES	26	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d.e.a	ENSGT00940000164275.f.d.e.b	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c.a	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b
Burton s mouthbrooder	MODERN SPECIES	901															arhgef7b (ENSHBUG00000016268)	ENSHBUG00000016124 ##22	ENSHBUG00000016029	ENSHBUG00000016005	CACNB4 (ENSHBUG00000015918)	SEMA5B (ENSHBUG00000015867)	kpnb3 (ENSHBUG00000015815)	atg13 (ENSHBUG00000015720)	HARBI1 (ENSHBUG00000015609)	creb3l1 (ENSHBUG00000015586)	zgc:110699 (ENSHBUG00000015575)	ndufs1 (ENSHBUG00000015547)	unc50 (ENSHBUG00000015498)	ENSHBUG00000015482
Haplochromini_A	ANCESTRAL SPECIES	29	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d.e.a	ENSGT00940000164275.f.d.e.b	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c.a	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163494.a.a.c.b.b
Haplochromini_B	ANCESTRAL SPECIES	38	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d.e.a	ENSGT00940000164275.f.d.e.b	ENSGT00950000182837.b.b.c.b	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c.a	ENSGT00940000164275.f.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d
Eastern happy	MODERN SPECIES	14	spp2 (ENSACLG00000027900)	alg11 (ENSACLG00000027899)	cpb2 (ENSACLG00000027901)	zc3h13 (ENSACLG00000027909)	rpl31 (ENSACLG00000027911)	chst10 (ENSACLG00000027912)	MAP4K4 (ENSACLG00000027913)	ENSACLG00000027924	ENSACLG00000001047	MCF2L (ENSACLG00000001155)	cab39l (ENSACLG00000001540)	cdadc1 (ENSACLG00000001587)	ENSACLG00000001609	ENSACLG00000001652	arhgef7b (ENSACLG00000001666)	ENSACLG00000001793 ##22	ENSACLG00000001817	ENSACLG00000001848	CACNB4 (ENSACLG00000001924)	SEMA5B (ENSACLG00000001991)	kpnb3 (ENSACLG00000002083)	atg13 (ENSACLG00000002212)	HARBI1 (ENSACLG00000002296)	creb3l1 (ENSACLG00000002322)	zgc:110699 (ENSACLG00000002333)	ndufs1 (ENSACLG00000002346)	unc50 (ENSACLG00000002394)	ENSACLG00000002400	ENSACLG00000002405	etv5b (ENSACLG00000002412)	crygs3 (ENSACLG00000002422)
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005008645	ENSMZEG00005008736	ENSMZEG00005008752	SLC5A3 (ENSMZEG00005008785)	ENSMZEG00005008814	ENSMZEG00005008858	GPR180 (ENSMZEG00005008873)	ENSMZEG00005008894	ENSMZEG00005008921	ENSMZEG00005008934	ENSMZEG00005008993	LRRC3 (ENSMZEG00005017381)	ENSMZEG00005017384	ENSMZEG00005017386	arhgef7b (ENSMZEG00005017401)	ENSMZEG00005017432 ##22	ENSMZEG00005017443	ENSMZEG00005017471	CACNB4 (ENSMZEG00005017483)	SEMA5B (ENSMZEG00005017504)	kpnb3 (ENSMZEG00005017517)	atg13 (ENSMZEG00005017530)	HARBI1 (ENSMZEG00005017538)	creb3l1 (ENSMZEG00005017544)	zgc:110699 (ENSMZEG00005017548)	ndufs1 (ENSMZEG00005017551)	unc50 (ENSMZEG00005017565)	ENSMZEG00005017569	tmem47 (ENSMZEG00005017573)	ENSMZEG00005017581	ENSMZEG00005017586
P. nyererei	MODERN SPECIES	571														ENSPNYG00000005478	arhgef7b (ENSPNYG00000005522)	ENSPNYG00000005608 ##22	CACNB4 (ENSPNYG00000005681)	SEMA5B (ENSPNYG00000005762)	kpnb3 (ENSPNYG00000005828)	atg13 (ENSPNYG00000005925)	HARBI1 (ENSPNYG00000006001)	zgc:110699 (ENSPNYG00000006031)	ndufs1 (ENSPNYG00000006054)	unc50 (ENSPNYG00000006115)	ENSPNYG00000006128	etv5b (ENSPNYG00000006152)	crygs3 (ENSPNYG00000006171)	ENSPNYG00000006194	ENSPNYG00000006264	ENSPNYG00000006468	ENSPNYG00000006586
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00390000008096.B.e.b	ENSGT00940000160342.g.a	ENSGT00940000165242.d
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000165996	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000165996	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b
Pleuronectoidei	ANCESTRAL SPECIES	42	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.c
Turbot	MODERN SPECIES		ENSSMAG00000007130	ENSSMAG00000025555	ENSSMAG00000007176	ENSSMAG00000031623	ENSSMAG00000005339	ENSSMAG00000005108	cab39l (ENSSMAG00000005071)	cdadc1 (ENSSMAG00000005048)	rcbtb1 (ENSSMAG00000004983)	ENSSMAG00000004940	tubgcp3 (ENSSMAG00000004863)	ENSSMAG00000004696	ENSSMAG00000004680	arhgef7b (ENSSMAG00000004589)	ENSSMAG00000004428	ENSSMAG00000004318 ##22	ENSSMAG00000004291	ENSSMAG00000004288	ENSSMAG00000023417	ENSSMAG00000004263	ENSSMAG00000004253	ENSSMAG00000004036	ENSSMAG00000004009	ENSSMAG00000003983	ENSSMAG00000003714	rwdd (ENSSMAG00000003737)	ENSSMAG00000003759	ENSSMAG00000003768	ENSSMAG00000003777	ENSSMAG00000003781	ENSSMAG00000003790
Tongue sole	MODERN SPECIES	5	ENSCSEG00000003406	arpc2 (ENSCSEG00000003404)	MCF2L (ENSCSEG00000003384)	cab39l (ENSCSEG00000003374)	cdadc1 (ENSCSEG00000003370)	GPR180 (ENSCSEG00000003364)	TGDS (ENSCSEG00000003361)	ddx3xa (ENSCSEG00000003352)	SLC5A3 (ENSCSEG00000003349)	ENSCSEG00000003346	ENSCSEG00000002333	PLN (ENSCSEG00000002332)	fam184aa (ENSCSEG00000002310)	tubgcp3 (ENSCSEG00000002300)	ATP11A (ENSCSEG00000002286)	ENSCSEG00000002262 ##22	ENSCSEG00000002258	SLC19A1 (ENSCSEG00000002256)	ENSCSEG00000002255	atg13 (ENSCSEG00000002249)	ENSCSEG00000002244	creb3l1 (ENSCSEG00000002240)	ndufs1 (ENSCSEG00000002226)	ENSCSEG00000002222	unc50 (ENSCSEG00000002219)	kpnb3 (ENSCSEG00000002177)	ENSCSEG00000002163	ENSCSEG00000002156	tdgf1 (ENSCSEG00000002152)	zgc:113625 (ENSCSEG00000002150)	ENSCSEG00000002148
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00940000165996	ENSGT00950000183030.j	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b
Seriola	ANCESTRAL SPECIES	44						ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.b.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b
Yellowtail amberjack	MODERN SPECIES	3005	ENSSLDG00000000729	zfr (ENSSLDG00000000762)	ENSSLDG00000000834	sub1b (ENSSLDG00000000852)	ENSSLDG00000000901	ENSSLDG00000000938	MCF2L (ENSSLDG00000001032)	cab39l (ENSSLDG00000001167)	cdadc1 (ENSSLDG00000001205)	rcbtb1 (ENSSLDG00000001219)	ENSSLDG00000001271	tubgcp3 (ENSSLDG00000001312)	ATP11A (ENSSLDG00000001419)	SOX1 (ENSSLDG00000001549)	arhgef7b (ENSSLDG00000001565)	ENSSLDG00000001651 ##22	unc50 (ENSSLDG00000001793)	ENSSLDG00000001831	ndufs1 (ENSSLDG00000001862)	zgc:110699 (ENSSLDG00000001933)	creb3l1 (ENSSLDG00000002002)	atg13 (ENSSLDG00000002116)	kpnb3 (ENSSLDG00000002270)	SEMA5B (ENSSLDG00000002404)	ENSSLDG00000002452	ENSSLDG00000002510	ENSSLDG00000002608	GPR180 (ENSSLDG00000002631)	ENSSLDG00000002652	ENSSLDG00000002762	SLC5A3 (ENSSLDG00000002817)
Greater amberjack	MODERN SPECIES	343															arhgef7b (ENSSDUG00000023833)	ENSSDUG00000023832 ##22	ENSSDUG00000023831	unc50 (ENSSDUG00000023830)	ndufs1 (ENSSDUG00000023829)	zgc:110699 (ENSSDUG00000023828)	creb3l1 (ENSSDUG00000023827)	atg13 (ENSSDUG00000023826)	kpnb3 (ENSSDUG00000023825)	SEMA5B (ENSSDUG00000023824)	ENSSDUG00000023823	ENSSDUG00000023822
Barramundi perch	MODERN SPECIES	165					ENSLCAG00010016328	ENSLCAG00010016515	MCF2L (ENSLCAG00010017427)	cab39l (ENSLCAG00010017802)	cdadc1 (ENSLCAG00010017851)	rcbtb1 (ENSLCAG00010017866)	ENSLCAG00010017889	tubgcp3 (ENSLCAG00010017896)	ATP11A (ENSLCAG00010017994)	SOX1 (ENSLCAG00010018822)	arhgef7b (ENSLCAG00010018976)	ENSLCAG00010019392 ##22	ENSLCAG00010019436	unc50 (ENSLCAG00010019438)	ndufs1 (ENSLCAG00010019461)	zgc:110699 (ENSLCAG00010019583)	HARBI1 (ENSLCAG00010019629)	atg13 (ENSLCAG00010019633)	kpnb3 (ENSLCAG00010019658)	SEMA5B (ENSLCAG00010019680)	ENSLCAG00010019817	ENSLCAG00010020233	GPR180 (ENSLCAG00010020239)	TGDS (ENSLCAG00010020243)	ENSLCAG00010020255	SLC5A3 (ENSLCAG00010020306)	ENSLCAG00010020315
Anabantaria	ANCESTRAL SPECIES	23	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000021892	ENSMAMG00000021889	ENSMAMG00000021794	ENSMAMG00000021790	ENSMAMG00000021787	ENSMAMG00000021762	ENSMAMG00000021735	cab39l (ENSMAMG00000021730)	cdadc1 (ENSMAMG00000021707)	rcbtb1 (ENSMAMG00000021704)	ENSMAMG00000021696	tubgcp3 (ENSMAMG00000021681)	ENSMAMG00000021662	ENSMAMG00000021660	arhgef7b (ENSMAMG00000021649)	ENSMAMG00000021642 ##22	ENSMAMG00000021635	ENSMAMG00000021632	ENSMAMG00000021618	ENSMAMG00000021611	ENSMAMG00000021607	ENSMAMG00000021593	ENSMAMG00000021575	ENSMAMG00000021533	ENSMAMG00000021521	ENSMAMG00000021515	ENSMAMG00000021484	ENSMAMG00000026854	ENSMAMG00000021458	ENSMAMG00000021481	ENSMAMG00000021452
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446
Climbing perch	MODERN SPECIES	11	zc3h13 (ENSATEG00000003937)	ENSATEG00000003942	ENSATEG00000029382	ENSATEG00000003973	ENSATEG00000004134	ENSATEG00000004149	ENSATEG00000004221	cab39l (ENSATEG00000004327)	cdadc1 (ENSATEG00000026372)	rcbtb1 (ENSATEG00000004379)	ENSATEG00000004442	tubgcp3 (ENSATEG00000004470)	ENSATEG00000004602	ENSATEG00000004770	arhgef7b (ENSATEG00000004776)	ENSATEG00000004855 ##22	ENSATEG00000004878	ENSATEG00000004989	ENSATEG00000005000	ENSATEG00000005037	ENSATEG00000005051	ENSATEG00000005263	ENSATEG00000005302	ENSATEG00000005457	ENSATEG00000026987	ENSATEG00000005495	cckbra (ENSATEG00000005530)	ENSATEG00000005561	lig4 (ENSATEG00000005583)	irs2a (ENSATEG00000005603)	ENSATEG00000005610
Siamese fighting fish	MODERN SPECIES	10	chst10 (ENSBSLG00000003312)	MAP4K4 (ENSBSLG00000003402)	ENSBSLG00000003461	RDX (ENSBSLG00000003472)	ENSBSLG00000003476	ENSBSLG00000003477	MCF2L (ENSBSLG00000003479)	cab39l (ENSBSLG00000003481)	cdadc1 (ENSBSLG00000003482)	rcbtb1 (ENSBSLG00000003483)	FGF14 (ENSBSLG00000003484)	tubgcp3 (ENSBSLG00000003486)	ENSBSLG00000003490	SOX1 (ENSBSLG00000003504)	arhgef7b (ENSBSLG00000003511)	ENSBSLG00000003518 ##22	pspc1 (ENSBSLG00000003519)	ENSBSLG00000003520	ENSBSLG00000003521	NBEAL1 (ENSBSLG00000003524)	STRADB (ENSBSLG00000003529)	TRAK2 (ENSBSLG00000003530)	ENSBSLG00000003532	nudt15 (ENSBSLG00000003533)	cpo (ENSBSLG00000003534)	cckbra (ENSBSLG00000003536)	NALF1 (ENSBSLG00000003538)	lig4 (ENSBSLG00000003539)	irs2a (ENSBSLG00000003542)	ENSBSLG00000003543	acp2 (ENSBSLG00000003544)
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000165996	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00940000164022	ENSGT00950000183003.a.a.b.c.a	ENSGT00390000009029	ENSGT00940000155992.c.b	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225.s.b	ENSGT00940000164013	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000165242.d	ENSGT00530000063669.b.b	ENSGT00390000002403	ENSGT00950000183302	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000154443.e	ENSGT00940000159196	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b
Fugu	MODERN SPECIES	20	ZBED1 (ENSTRUG00000027311)	sowahcb (ENSTRUG00000028799)	cep70 (ENSTRUG00000005903)	adarb1a (ENSTRUG00000006297)	slx9 (ENSTRUG00000021414)	PLCD4 (ENSTRUG00000006810)	cnot9 (ENSTRUG00000007110)	ENSTRUG00000020502	ENSTRUG00000020625	GPR180 (ENSTRUG00000007281)	FGF14 (ENSTRUG00000030093)	tubgcp3 (ENSTRUG00000017326)	atp11a (ENSTRUG00000017330)	SOX1 (ENSTRUG00000021237)	arhgef7b (ENSTRUG00000017333)	ENSTRUG00000017337 ##22	ENSTRUG00000028094	ENSTRUG00000017357	ENSTRUG00000017359	fam184aa (ENSTRUG00000017364)	ENSTRUG00000021847	ENSTRUG00000028934	ENSTRUG00000003573	ENSTRUG00000003862	ENSTRUG00000021682	cdadc1 (ENSTRUG00000004808)	cab39l (ENSTRUG00000005008)	MCF2L (ENSTRUG00000005283)	RDX (ENSTRUG00000005857)	ENSTRUG00000022519	MAP4K4 (ENSTRUG00000006376)
Tetraodon	MODERN SPECIES	18	cd99 (ENSTNIG00000014494)	dhrsx (ENSTNIG00000014495)	ENSTNIG00000014496	cep70 (ENSTNIG00000014497)	adarb1a (ENSTNIG00000014498)	slx9 (ENSTNIG00000014499)	PLCD4 (ENSTNIG00000014500)	cnot9 (ENSTNIG00000014501)	GPR180 (ENSTNIG00000014502)	ENSTNIG00000014503	ENSTNIG00000014504	tubgcp3 (ENSTNIG00000014505)	ATP11A (ENSTNIG00000014506)	SOX1 (ENSTNIG00000012196)	arhgef7b (ENSTNIG00000014507)	ENSTNIG00000014508 ##22	ENSTNIG00000014509	ENSTNIG00000014510	fam184aa (ENSTNIG00000014511)	ENSTNIG00000014512	SLC5A3 (ENSTNIG00000014513)	ENSTNIG00000014514	ENSTNIG00000001981	cdadc1 (ENSTNIG00000014515)	cab39l (ENSTNIG00000014516)	MCF2L (ENSTNIG00000014517)	RDX (ENSTNIG00000014518)	ENSTNIG00000014519	ENSTNIG00000014520	chst10 (ENSTNIG00000014521)	rpl31 (ENSTNIG00000014522)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e
Ballan wrasse	MODERN SPECIES	549															arhgef7b (ENSLBEG00000007771)	ENSLBEG00000007901 ##22	ENSLBEG00000007980	unc50 (ENSLBEG00000008012)	ndufs1 (ENSLBEG00000008038)	zgc:110699 (ENSLBEG00000008101)	atg13 (ENSLBEG00000008203)	kpnb3 (ENSLBEG00000008271)	SEMA5B (ENSLBEG00000008363)	ENSLBEG00000008540	ENSLBEG00000008600	ENSLBEG00000008648	CHRM4 (ENSLBEG00000008706)	mdka (ENSLBEG00000008725)
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e
Perciformes	ANCESTRAL SPECIES	24	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT01030000235083	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e
Pike perch	MODERN SPECIES	9	chst10 (ENSSLUG00000023251)	MAP4K4 (ENSSLUG00000021448)	ENSSLUG00000021298	ENSSLUG00000020701	MCF2L (ENSSLUG00000019427)	cab39l (ENSSLUG00000019371)	cdadc1 (ENSSLUG00000019365)	rcbtb1 (ENSSLUG00000019117)	ENSSLUG00000019105	tubgcp3 (ENSSLUG00000019071)	ATP11A (ENSSLUG00000018831)	ENSSLUG00000018752	SOX1 (ENSSLUG00000018748)	ENSSLUG00000018742	arhgef7b (ENSSLUG00000018682)	ENSSLUG00000018666 ##22	ENSSLUG00000018647	unc50 (ENSSLUG00000018635)	ndufs1 (ENSSLUG00000018357)	zgc:110699 (ENSSLUG00000018339)	HARBI1 (ENSSLUG00000018331)	atg13 (ENSSLUG00000018288)	kpnb3 (ENSSLUG00000018227)	SEMA5B (ENSSLUG00000018070)	CACNB4 (ENSSLUG00000016995)	ENSSLUG00000016922	GPR180 (ENSSLUG00000016911)	TGDS (ENSSLUG00000016873)	ENSSLUG00000013681	SLC5A3 (ENSSLUG00000013374)	ENSSLUG00000013332
Channel bull blenny	MODERN SPECIES	11	cpb2 (ENSCGOG00000022743)	rpl31 (ENSCGOG00000022725)	chst10 (ENSCGOG00000022724)	ENSCGOG00000017296	ENSCGOG00000017118	RDX (ENSCGOG00000013573)	MCF2L (ENSCGOG00000012370)	cab39l (ENSCGOG00000012336)	cdadc1 (ENSCGOG00000012332)	rcbtb1 (ENSCGOG00000012009)	FGF14 (ENSCGOG00000011997)	tubgcp3 (ENSCGOG00000011368)	ATP11A (ENSCGOG00000011033)	SOX1 (ENSCGOG00000011013)	arhgef7b (ENSCGOG00000009531)	ENSCGOG00000009396 ##22	ENSCGOG00000009350	ENSCGOG00000009342	ENSCGOG00000009326	ENSCGOG00000009315	unc50 (ENSCGOG00000009301)	ndufs1 (ENSCGOG00000008954)	ENSCGOG00000008946	zgc:110699 (ENSCGOG00000008944)	creb3l1 (ENSCGOG00000008935)	ENSCGOG00000008930	atg13 (ENSCGOG00000008766)	kpnb3 (ENSCGOG00000008080)	SEMA5B (ENSCGOG00000007498)	CACNB4 (ENSCGOG00000007095)	ENSCGOG00000007075
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000165996	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01030000234765
Lumpfish	MODERN SPECIES	11	chst10 (ENSCLMG00005004894)	MAP4K4 (ENSCLMG00005002739)	ENSCLMG00005002730	ENSCLMG00005002728	RDX (ENSCLMG00005000795)	ENSCLMG00005000777	MCF2L (ENSCLMG00005000628)	cab39l (ENSCLMG00005000599)	cdadc1 (ENSCLMG00005000549)	rcbtb1 (ENSCLMG00005000540)	ENSCLMG00005000536	tubgcp3 (ENSCLMG00005000524)	ATP11A (ENSCLMG00005000052)	SOX1 (ENSCLMG00005019072)	arhgef7b (ENSCLMG00005017440)	ENSCLMG00005017235 ##22	ENSCLMG00005017219	ENSCLMG00005017216	abcb6a (ENSCLMG00005015690)	nrp2a (ENSCLMG00005014713)	ENSCLMG00005014693	ENSCLMG00005014691	ENSCLMG00005014689	mbnl2 (ENSCLMG00005014677)	rap2ab (ENSCLMG00005014674)	mrpl39 (ENSCLMG00005014634)	jam2a (ENSCLMG00005014633)	atp5pf (ENSCLMG00005014632)	APP (ENSCLMG00005007306)	cyyr1 (ENSCLMG00005007245)	ADAMTS1 (ENSCLMG00005007244)
Stickleback	MODERN SPECIES		rnd3a (ENSGACG00000014917)	mmadhca (ENSGACG00000014909)	lypd6 (ENSGACG00000014906)	pspc1 (ENSGACG00000014901)	ENSGACG00000014898	RDX (ENSGACG00000014895)	MCF2L (ENSGACG00000014889)	cab39l (ENSGACG00000014886)	cdadc1 (ENSGACG00000014883)	rcbtb1 (ENSGACG00000014869)	ENSGACG00000014859	tubgcp3 (ENSGACG00000014853)	ATP11A (ENSGACG00000014851)	SOX1 (ENSGACG00000014850)	arhgef7b (ENSGACG00000014843)	ENSGACG00000014838 ##22	ENSGACG00000014833	ENSGACG00000014831	unc50 (ENSGACG00000014827)	ndufs1 (ENSGACG00000014821)	zgc:110699 (ENSGACG00000014819)	HARBI1 (ENSGACG00000014817)	atg13 (ENSGACG00000014810)	kpnb3 (ENSGACG00000014804)	SEMA5B (ENSGACG00000014799)	CACNB4 (ENSGACG00000014790)	UNC80 (ENSGACG00000014773)	ENSGACG00000014770	acadl (ENSGACG00000014754)	ENSGACG00000014752	lancl1 (ENSGACG00000014735)
Eupecaria_C	ANCESTRAL SPECIES	27	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000153676.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000163322.a.a.b	ENSGT00940000163149.a.a
Gilthead seabream	MODERN SPECIES	16	zc3h13 (ENSSAUG00010015648)	rpl31 (ENSSAUG00010015646)	MAP4K4 (ENSSAUG00010013987)	ENSSAUG00010013896	ENSSAUG00010010686	MCF2L (ENSSAUG00010010458)	cab39l (ENSSAUG00010010440)	cdadc1 (ENSSAUG00010010438)	rcbtb1 (ENSSAUG00010010146)	FGF14 (ENSSAUG00010010139)	tubgcp3 (ENSSAUG00010010123)	ATP11A (ENSSAUG00010007402)	SOX1 (ENSSAUG00010007362)	arhgef7b (ENSSAUG00010005047)	ENSSAUG00010005038	ENSSAUG00010002968 ##22	SATB2 (ENSSAUG00010002841)	crygm6 (ENSSAUG00010002812)	ENSSAUG00010002801	ENSSAUG00010010442	ENSSAUG00010010441	ENSSAUG00010010439	ENSSAUG00010010414	etv5b (ENSSAUG00010010411)	dhrsx (ENSSAUG00010010409)	prrg2 (ENSSAUG00010010406)	PRR12 (ENSSAUG00010010404)	ENSSAUG00010010373	ENSSAUG00010010365 #16	SLITRK2 (ENSSAUG00010010363)	ENSSAUG00010010361
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	31	ENSGT00940000159160	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000157874.q.a	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000155814.m	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b ##22	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000165279.d	ENSGT00940000163494.a.a.c.a.d
Large yellow croaker	MODERN SPECIES	486	CHRNA2 (ENSLCRG00005022458) #23	ENSLCRG00005022467	ENSLCRG00005022468	ENSLCRG00005022470	ENSLCRG00005022473	ENSLCRG00005022489	MCF2L (ENSLCRG00005022788)	cab39l (ENSLCRG00005022809)	rcbtb1 (ENSLCRG00005022812)	ENSLCRG00005022817	FGF14 (ENSLCRG00005022819)	tubgcp3 (ENSLCRG00005022823)	ATP11A (ENSLCRG00005022843)	SOX1 (ENSLCRG00005023079)	arhgef7b (ENSLCRG00005023088)	ENSLCRG00005023190 ##22	ENSLCRG00005023257	ENSLCRG00005023260	unc50 (ENSLCRG00005023261)	ndufs1 (ENSLCRG00005023262)	zgc:110699 (ENSLCRG00005023265)	creb3l1 (ENSLCRG00005023267)	ENSLCRG00005023270	atg13 (ENSLCRG00005023275)	kpnb3 (ENSLCRG00005023289)	SEMA5B (ENSLCRG00005023321)	CACNB4 (ENSLCRG00005023338)	etv5b (ENSLCRG00005023557)	ENSLCRG00005023561	ENSLCRG00005023563	SATB2 (ENSLCRG00005023566)
European seabass	DUPLICATION
European seabass	MODERN SPECIES	15	cpb2 (ENSDLAG00005018614)	zc3h13 (ENSDLAG00005018626)	ENSDLAG00005018637	ENSDLAG00005032912	ENSDLAG00005018949	ENSDLAG00005029785	ENSDLAG00005024982	ENSDLAG00005025157	ENSDLAG00005025502	rcbtb1 (ENSDLAG00005025521)	ENSDLAG00005025543	tubgcp3 (ENSDLAG00005025561)	ENSDLAG00005025632	ENSDLAG00005025656	arhgef7b (ENSDLAG00005025674)	ENSDLAG00005025778 ##22	ENSDLAG00005025847	ENSDLAG00005025856 ##22	ENSDLAG00005025657	ENSDLAG00005025864	ENSDLAG00005029152	ENSDLAG00005025879	ENSDLAG00005025881	ENSDLAG00005032120	ENSDLAG00005025890	ENSDLAG00005025911	ENSDLAG00005025952	ENSDLAG00005025986	ENSDLAG00005025990	ENSDLAG00005033835	ENSDLAG00005011417
European seabass	MODERN SPECIES	15	ENSDLAG00005018637	ENSDLAG00005032912	ENSDLAG00005018949	ENSDLAG00005029785	ENSDLAG00005024982	ENSDLAG00005025157	ENSDLAG00005025502	rcbtb1 (ENSDLAG00005025521)	ENSDLAG00005025543	tubgcp3 (ENSDLAG00005025561)	ENSDLAG00005025632	ENSDLAG00005025656	arhgef7b (ENSDLAG00005025674)	ENSDLAG00005025778 ##22	ENSDLAG00005025847	ENSDLAG00005025856 ##22	ENSDLAG00005025657	ENSDLAG00005025864	ENSDLAG00005029152	ENSDLAG00005025879	ENSDLAG00005025881	ENSDLAG00005032120	ENSDLAG00005025890	ENSDLAG00005025911	ENSDLAG00005025952	ENSDLAG00005025986	ENSDLAG00005025990	ENSDLAG00005033835	ENSDLAG00005011417	ENSDLAG00005001958	ENSDLAG00005034722
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	275	ENSHCOG00000008746	ENSHCOG00000008753	ENSHCOG00000008878	ENSHCOG00000008925	SOX1 (ENSHCOG00000008937)	ATP11A (ENSHCOG00000009108)	tubgcp3 (ENSHCOG00000009182)	ENSHCOG00000009194	ENSHCOG00000009214	rcbtb1 (ENSHCOG00000009243)	cdadc1 (ENSHCOG00000009258)	cab39l (ENSHCOG00000009280)	MCF2L (ENSHCOG00000009356)	ENSHCOG00000009403	ARHGEF7 (ENSHCOG00000009454)	ENSHCOG00000009568 ##22	MAP4K4 (ENSHCOG00000009697)	chst10 (ENSHCOG00000009716)	chst10 (ENSHCOG00000009726)	rpl31 (ENSHCOG00000009739)	ENSHCOG00000009742	cpb2 (ENSHCOG00000000303)	alg11 (ENSHCOG00000009773)	raph1b (ENSHCOG00000009809)	ENSHCOG00000009834	ENSHCOG00000009853	ENSHCOG00000009863	mdh1b (ENSHCOG00000009881)	retreg2 (ENSHCOG00000009888)	ENSHCOG00000010096	cnppd1 (ENSHCOG00000010135)
Tiger tail seahorse	MODERN SPECIES	876																ENSHCOG00000019102 ##22
Protacanthopterygii	ANCESTRAL SPECIES	185	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.h	ENSGT00390000016811.g	ENSGT00940000164041.b.b	ENSGT00940000156557.g	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00940000160303.a.b	ENSGT00940000157269.a.b ##22
Northern pike	MODERN SPECIES	14	ENSELUG00000019292	dnajc27 (ENSELUG00000019264)	ENSELUG00000019174	EFR3B (ENSELUG00000018320)	pomca (ENSELUG00000018258)	ENSELUG00000018221	snx9a (ENSELUG00000018211)	ENSELUG00000026497	ENSELUG00000018197	ENSELUG00000000759	ENSELUG00000018186	ENSELUG00000000750	SH3YL1 (ENSELUG00000018153)	ENSELUG00000018118	ENSELUG00000018095	ENSELUG00000018061 ##22	ENSELUG00000017940	plaat1l (ENSELUG00000017934)	ENSELUG00000017888 #24	ENSELUG00000017781	ENSELUG00000017746	ENSELUG00000000707	sntg2 (ENSELUG00000017682)	TPO (ENSELUG00000017657)	ENSELUG00000017600	ENSELUG00000017518	ENSELUG00000017491	ENSELUG00000017471	ENSELUG00000017462	SNAP25 (ENSELUG00000000665)	ANKEF1 (ENSELUG00000017404)
Salmoninae	ANCESTRAL SPECIES	1120													ENSGT00940000159969.b.a.b	ENSGT00510000048137.i	ENSGT00940000154607.a.d	ENSGT00940000157269.a.b ##22
Salmoninae_a	ANCESTRAL SPECIES	62	ENSGT00940000156106.h	ENSGT00660000095541.a.b.c.a.b.b.b	ENSGT00940000165086.a	ENSGT00950000183148.a.a.b	ENSGT00940000154071.A.h.b	ENSGT01100000264076.A.a	ENSGT01100000263495.E.m.a.b.a	ENSGT00950000183114.a.a	ENSGT00940000157133.e	ENSGT00390000002143.b.a	ENSGT00390000016811.h	ENSGT00390000016811.g.e	ENSGT00940000175756.b	ENSGT00510000048137.i	ENSGT00940000154607.a.d	ENSGT00940000157269.a.b ##22	ENSGT00940000158299.b #23	ENSGT00940000158614.l #24	ENSGT00940000156634.b.h.b	ENSGT00940000158687.a.b.e	ENSGT00390000004923.C	ENSGT00390000005345	ENSGT00940000154242.a.c.f	ENSGT01030000234996	ENSGT00950000182863.B.b.h	ENSGT00940000160421.i.h.b	ENSGT00940000167312.d	ENSGT01100000263495.E.m.a.b.b	ENSGT01100000263520.a.a.a.a.b.b.a.a.a.a.b	ENSGT00950000182843.a.a.a.b.a.a.a.b.a	ENSGT00940000156852.c
Oncorhynchus	ANCESTRAL SPECIES	60	ENSGT00940000158704.f	ENSGT00940000156106.h	ENSGT00660000095541.a.b.c.a.b.b.b	ENSGT00940000165086.a	ENSGT00950000183148.a.a.b	ENSGT00940000154071.A.h.b	ENSGT01100000264076.A.a	ENSGT01100000263495.E.m.a.b.a	ENSGT00950000183114.a.a	ENSGT00940000157133.e	ENSGT00390000002143.b.a	ENSGT00390000016811.g.e	ENSGT00940000175756.b	ENSGT00510000048137.i	ENSGT00940000154607.a.d	ENSGT00940000157269.a.b ##22	ENSGT00940000158299.b #23	ENSGT00940000158614.l #24	ENSGT00940000156634.b.h.b	ENSGT00940000158687.a.b.e	ENSGT00390000004923.C	ENSGT00390000005345	ENSGT00940000154242.a.c.f	ENSGT01030000234996	ENSGT00950000182863.B.b.h	ENSGT00950000182957.b.a.b.a.b.z	ENSGT00940000167312.d	ENSGT01100000263495.E.m.a.b.b	ENSGT01100000263520.a.a.a.a.b.b.a.a.a.a.b	ENSGT00950000182843.a.a.a.b.a.a.a.b.a	ENSGT00940000156852.c
Oncorhynchus_a	ANCESTRAL SPECIES	70	ENSGT00940000159132.a	ENSGT00940000158072.h	ENSGT00940000158704.f	ENSGT00940000156106.h	ENSGT00660000095541.a.b.c.a.b.b.b	ENSGT00940000165086.a	ENSGT00950000183148.a.a.b	ENSGT00940000154071.A.h.b	ENSGT00950000183114.a.a	ENSGT00940000157133.e	ENSGT00390000002143.b.a	ENSGT00390000016811.g.e	ENSGT00940000159969.b.a.b	ENSGT00510000048137.i	ENSGT00940000154607.a.d	ENSGT00940000157269.a.b ##22	ENSGT00940000158299.b #23	ENSGT00940000158614.l #24	ENSGT00940000156634.b.h.b	ENSGT00940000158687.a.b.e	ENSGT00390000004923.C	ENSGT00390000005345	ENSGT00940000154242.a.c.f	ENSGT01030000234996	ENSGT00950000182863.B.b.h	ENSGT00950000182957.b.a.b.a.b.z	ENSGT00940000167312.d	ENSGT01100000263495.E.m.a.b.b	ENSGT01100000263520.a.a.a.a.b.b.a.a.a.a.b	ENSGT00950000182843.a.a.a.b.a.a.a.b.a	ENSGT00940000156852.c
Coho salmon	MODERN SPECIES	27	ENSOKIG00005010464	pygl (ENSOKIG00005009568)	trim9 (ENSOKIG00005009443)	ENSOKIG00005009434	XDH (ENSOKIG00005004002)	ENSOKIG00005003712	dnajc27 (ENSOKIG00005003701)	ENSOKIG00005003693	EFR3B (ENSOKIG00005002729)	pomca (ENSOKIG00005002514)	ENSOKIG00005002507	ENSOKIG00005002497	SH3YL1 (ENSOKIG00005002486)	ENSOKIG00005002478	ENSOKIG00005002463	ENSOKIG00005002431 ##22	chrna2a (ENSOKIG00005002385) #23	ephx2 (ENSOKIG00005002318) #24	plaat1l (ENSOKIG00005002266)	ENSOKIG00005002239	ENSOKIG00005002176	ENSOKIG00005002137	ENSOKIG00005002112	ENSOKIG00005002098	SNTG2 (ENSOKIG00005002050)	ENSOKIG00005001995	ENSOKIG00005001962	ENSOKIG00005001952	ENSOKIG00005001948	SNAP25 (ENSOKIG00005001940)	ANKEF1 (ENSOKIG00005001916)
Chinook salmon	MODERN SPECIES	2	chp1 (ENSOTSG00005004982)	lgmn (ENSOTSG00005004963)	ENSOTSG00005004958	ENSOTSG00005004952	sav1 (ENSOTSG00005004948)	ENSOTSG00005004944	map4k5 (ENSOTSG00005004942)	cdkl1 (ENSOTSG00005004940)	dmac2l (ENSOTSG00005004939)	l2hgdh (ENSOTSG00005004938)	sos2 (ENSOTSG00005003827)	XDH (ENSOTSG00005003659)	dnajc27 (ENSOTSG00005003589)	SH3YL1 (ENSOTSG00005003588)	ENSOTSG00005003586	ENSOTSG00005003583 ##22	chrna2a (ENSOTSG00005003581) #23	ENSOTSG00005003573	ENSOTSG00005003566	ENSOTSG00005003565	ENSOTSG00005003560	ANKEF1 (ENSOTSG00005003546)	khk (ENSOTSG00005003542)	HPCAL1 (ENSOTSG00005003526)	ENSOTSG00005003520	ENSOTSG00005003516	matn3b (ENSOTSG00005003512)	wdr35 (ENSOTSG00005003482)	kcns3a (ENSOTSG00005003474)	rdh14a (ENSOTSG00005003471)	ENSOTSG00005003467
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000014544	ENSOMYG00000077313	ENSOMYG00000072445	ENSOMYG00000050549	ENSOMYG00000073579	ENSOMYG00000069829	ENSOMYG00000050729	ENSOMYG00000074973	dnajc27 (ENSOMYG00000074771)	ENSOMYG00000055861	pomca (ENSOMYG00000014502)	ENSOMYG00000069239	ENSOMYG00000014480	ENSOMYG00000076781	ENSOMYG00000014470	ENSOMYG00000059755 ##22	chrna2a (ENSOMYG00000076962) #23	ephx2 (ENSOMYG00000014450) #24	plaat1l (ENSOMYG00000051314)	ENSOMYG00000014436	ENSOMYG00000014422	ENSOMYG00000069804	ENSOMYG00000014413	ENSOMYG00000014410	ENSOMYG00000065237	ENSOMYG00000014363	ENSOMYG00000077831	ENSOMYG00000014356	ENSOMYG00000014352	ENSOMYG00000014345	ENSOMYG00000034946
Salmo	ANCESTRAL SPECIES	8	ENSGT00940000158704.f	ENSGT00940000156106.h	ENSGT00660000095541.a.b.c.a.a	ENSGT00940000165086.a	ENSGT00950000183148.a.a.b	ENSGT00940000154071.A.h.b	ENSGT01100000264076.A.a	ENSGT01100000263495.E.m.a.b.a	ENSGT00950000183114.a.a	ENSGT00940000157133.e	ENSGT00390000002143.b.a	ENSGT00390000016811.g.e	ENSGT00940000162505.b.e	ENSGT00510000048137.i	ENSGT00940000154607.a.d	ENSGT00940000157269.a.b ##22	ENSGT00940000158299.b #23	ENSGT00940000158614.l #24	ENSGT00940000156634.b.h.b	ENSGT00940000158687.a.b.e	ENSGT00390000004923.C	ENSGT00390000005345	ENSGT00940000154242.a.c.f	ENSGT01030000234996	ENSGT00950000182863.B.b.h	ENSGT00940000160421.i.h.b	ENSGT00940000167312.d	ENSGT01100000263495.E.m.a.b.b	ENSGT01100000263520.a.a.a.a.b.b.a.a.a.a.b	ENSGT00950000182843.a.a.a.b.a.a.a.b.a.b	ENSGT00940000156852.c
River trout	MODERN SPECIES	26	ENSSTUG00000024715	pygl (ENSSTUG00000021153)	trim9 (ENSSTUG00000021008)	ENSSTUG00000020986	ENSSTUG00000020978	ENSSTUG00000020969	XDH (ENSSTUG00000019052)	dnajc27 (ENSSTUG00000018946)	ENSSTUG00000018940	EFR3B (ENSSTUG00000018507)	pomca (ENSSTUG00000018477)	ENSSTUG00000018470	alkal2b (ENSSTUG00000018465)	SH3YL1 (ENSSTUG00000018438)	ENSSTUG00000018425	ENSSTUG00000017335 ##22	chrna2a (ENSSTUG00000017278) #23	ephx2 (ENSSTUG00000017252) #24	plaat1l (ENSSTUG00000017243)	ZNF513 (ENSSTUG00000017224)	ENSSTUG00000017206	ENSSTUG00000017127	ENSSTUG00000017107	ENSSTUG00000017102	sntg2 (ENSSTUG00000017032)	ENSSTUG00000016918	ENSSTUG00000016903	ENSSTUG00000016893	ENSSTUG00000016890	ENSSTUG00000016888	SNAP25 (ENSSTUG00000016861)
Atlantic salmon	MODERN SPECIES		trim9 (ENSSSAG00000104684)	ENSSSAG00000058229	ENSSSAG00000107292	ENSSSAG00000116603	ENSSSAG00000083748	ENSSSAG00000039639	ENSSSAG00000106554	dnajc27 (ENSSSAG00000112028)	ENSSSAG00000070629	pomca (ENSSSAG00000070765)	ENSSSAG00000036357	alkal2b (ENSSSAG00000034188)	ENSSSAG00000034886	ENSSSAG00000120676	ENSSSAG00000034575	ENSSSAG00000115052 ##22	chrna2a (ENSSSAG00000037181) #23	ephx2 (ENSSSAG00000035097) #24	plaat1l (ENSSSAG00000035519)	ENSSSAG00000121022	ENSSSAG00000109568	ENSSSAG00000103497	ENSSSAG00000070782	ENSSSAG00000103752	ENSSSAG00000070793	ENSSSAG00000070825	ENSSSAG00000070864	ENSSSAG00000070896	ENSSSAG00000084497	ENSSSAG00000103367	ENSSSAG00000070919
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3918														SH3YL1 (ENSHHUG00000047199)	ENSHHUG00000047202	ENSHHUG00000047207 ##22
Huchen	MODERN SPECIES	7946																ENSHHUG00000022048 ##22	ENSHHUG00000022036 ##22	ENSHHUG00000022029
Huchen	MODERN SPECIES	7946															ENSHHUG00000022048 ##22	ENSHHUG00000022036 ##22	ENSHHUG00000022029