Rodentia_A ANCESTRAL SPECIES 11 ENSGT00940000156282.a.a #8 ENSGT00940000154821.b #9 ENSGT00520000061590 ENSGT00940000155460 #10 ENSGT00940000157438 #11 ENSGT00390000015757 #12 ENSGT01050000244879.a.a.b #13 ENSGT00940000156896 #14 ENSGT00940000155397.b #16 ENSGT00900000143153 #15 ENSGT00530000063821.b.b #18 ENSGT00940000160907 #17 ENSGT00390000013443.d #19 ENSGT00940000155120 #20 ENSGT00530000063404.a #21 ENSGT00940000155640 #22 ENSGT00940000154434.b #23 ENSGT00940000154434.a.a #24 ENSGT00390000000375 #25 ENSGT00940000161430 #26 ENSGT00940000161373 ENSGT00390000002955 #27 ENSGT00530000063839 #28 ENSGT00390000009531 #29 ENSGT00390000011483 #31 ENSGT00940000162767 #32 ENSGT00390000005185 #33 ENSGT00940000163110 ENSGT00390000008296.b.a.a #34 ENSGT00390000017970 #35 ENSGT00940000154930 #36 Hystricomorpha ANCESTRAL SPECIES 46 ENSGT00940000156282.a.a #8 ENSGT00940000154821.b #9 ENSGT00520000061590 ENSGT00940000155460 #10 ENSGT00940000157438 #11 ENSGT00390000015757 #12 ENSGT01050000244879.a.a.b #13 ENSGT00940000156896 #14 ENSGT00940000155397.b #16 ENSGT00900000143153 #15 ENSGT00530000063821.b.b #18 ENSGT00940000160907 #17 ENSGT00390000013443.d #19 ENSGT00940000155120 #20 ENSGT00530000063404.a.c.a #21 ENSGT00940000155640 #22 ENSGT00940000154434.b #23 ENSGT00940000154434.a.a #24 ENSGT00390000000375 #25 ENSGT00940000161430 #26 ENSGT00390000002955 #27 ENSGT00530000063839 #28 ENSGT00390000009531 #29 ENSGT00390000011483 #31 ENSGT00940000162767 #32 ENSGT00390000005185 #33 ENSGT00390000008296.b.a.a #34 ENSGT00390000017970 #35 ENSGT00940000154930 #36 ENSGT00390000003343 #37 ENSGT00940000153617.D Hystricomorpha_a ANCESTRAL SPECIES 53 ENSGT00940000156282.a.a #8 ENSGT00940000154821.b.d #9 ENSGT00520000061590 ENSGT00940000155460 #10 ENSGT00940000157438 #11 ENSGT00390000015757 #12 ENSGT01050000244879.a.a.b #13 ENSGT00940000156896 #14 ENSGT00900000143153 #15 ENSGT00940000155397.b #16 ENSGT00530000063821.b.b #18 ENSGT00940000160907 #17 ENSGT00390000013443.d #19 ENSGT00940000155120 #20 ENSGT00530000063404.a.c.a #21 ENSGT00940000155640 #22 ENSGT00940000154434.b #23 ENSGT00940000154434.a.a #24 ENSGT00390000000375 #25 ENSGT00940000161430 #26 ENSGT00390000002955 #27 ENSGT00530000063839 #28 ENSGT00390000009531 #29 ENSGT00390000011483 #31 ENSGT00940000162767 #32 ENSGT00390000005185 #33 ENSGT00390000008296.b.a.a #34 ENSGT00390000017970 #35 ENSGT00940000154930 #36 ENSGT00390000003343 #37 ENSGT00940000153617.D Guinea pig MODERN SPECIES 21 DMRT3 (ENSCPOG00000005912) #7 DMRT2 (ENSCPOG00000008452) #8 SMARCA2 (ENSCPOG00000005475) #9 VLDLR (ENSCPOG00000007685) #10 KCNV2 (ENSCPOG00000032893) #11 ENSCPOG00000008552 #12 RFX3 (ENSCPOG00000000900) #13 GLIS3 (ENSCPOG00000005523) #14 ENSCPOG00000030794 #15 SLC1A1 (ENSCPOG00000011151) #16 PLPP6 (ENSCPOG00000012931) #17 SPATA6L (ENSCPOG00000012925) #18 CDC37L1 (ENSCPOG00000030938) #19 AK3 (ENSCPOG00000011927) #20 RCL1 (ENSCPOG00000015354) #21 JAK2 (ENSCPOG00000014653) #22 INSL6 (ENSCPOG00000002694) #23 ENSCPOG00000001365 #24 PLGRKT (ENSCPOG00000012720) #25 CD274 (ENSCPOG00000004371) #26 RIC1 (ENSCPOG00000013425) #27 ERMP1 (ENSCPOG00000013432) #28 MLANA (ENSCPOG00000013436) #29 ENSCPOG00000039570 #30 KIAA2026 (ENSCPOG00000013437) #31 RANBP6 (ENSCPOG00000005398) #32 IL33 (ENSCPOG00000030316) #33 UHRF2 (ENSCPOG00000004838) #34 GLDC (ENSCPOG00000004844) #35 KDM4C (ENSCPOG00000004700) #36 DMAC1 (ENSCPOG00000033539) #37 Hystricomorpha_b ANCESTRAL SPECIES 71 ENSGT00940000156282.a.a #8 ENSGT00940000154821.b.d #9 ENSGT00520000061590 ENSGT00940000155460 #10 ENSGT00940000157438 #11 ENSGT00390000015757 #12 ENSGT01050000244879.a.a.b #13 ENSGT00940000156896 #14 ENSGT00940000155397.b #16 ENSGT00900000143153 #15 ENSGT00530000063821.b.b #18 ENSGT00940000160907 #17 ENSGT00390000013443.d #19 ENSGT00940000155120 #20 ENSGT00530000063404.a.c.a #21 ENSGT00940000155640 #22 ENSGT00940000154434.b #23 ENSGT00390000000375 #25 ENSGT00940000161430 #26 ENSGT00390000002955 #27 ENSGT00530000063839 #28 ENSGT00390000009531 #29 ENSGT00390000011483 #31 ENSGT00940000162767 #32 ENSGT00390000005185 #33 ENSGT00390000008296.b.a.a #34 ENSGT00390000017970 #35 ENSGT00940000154930 #36 ENSGT00390000003343 #37 ENSGT00940000153617.D ENSGT00940000155804 Degu MODERN SPECIES 128 DMRT2 (ENSODEG00000004992) #8 SMARCA2 (ENSODEG00000005452) #9 ENSODEG00000006378 ENSODEG00000003492 #10 KCNV2 (ENSODEG00000003536) #11 ENSODEG00000003625 #12 RFX3 (ENSODEG00000003682) #13 GLIS3 (ENSODEG00000003731) #14 SLC1A1 (ENSODEG00000003884) #16 ENSODEG00000003949 #15 SPATA6L (ENSODEG00000004066) #18 PLPP6 (ENSODEG00000019026) #17 CDC37L1 (ENSODEG00000004185) #19 ENSODEG00000004121 #20 RCL1 (ENSODEG00000004151) ##21 JAK2 (ENSODEG00000004208) #22 ENSODEG00000004220 INSL6 (ENSODEG00000004231) #23 PLGRKT (ENSODEG00000004267) #25 CD274 (ENSODEG00000004298) #26 RIC1 (ENSODEG00000004340) #27 ERMP1 (ENSODEG00000005254) #28 MLANA (ENSODEG00000005368) #29 KIAA2026 (ENSODEG00000005381) #31 ENSODEG00000019201 RANBP6 (ENSODEG00000019173) #32 IL33 (ENSODEG00000005417) #33 Long-tailed chinchilla MODERN SPECIES 141 DMRT2 (ENSCLAG00000006168) #8 SMARCA2 (ENSCLAG00000014484) #9 VLDLR (ENSCLAG00000007543) #10 KCNV2 (ENSCLAG00000013226) #11 PUM3 (ENSCLAG00000011892) #12 RFX3 (ENSCLAG00000009044) #13 GLIS3 (ENSCLAG00000008116) #14 ENSCLAG00000009238 SLC1A1 (ENSCLAG00000009832) #16 ENSCLAG00000009476 #15 SPATA6L (ENSCLAG00000010497) #18 PLPP6 (ENSCLAG00000017735) #17 CDC37L1 (ENSCLAG00000005805) #19 AK3 (ENSCLAG00000006329) #20 RCL1 (ENSCLAG00000007445) #21 JAK2 (ENSCLAG00000005091) #22 INSL6 (ENSCLAG00000007423) #23 PLGRKT (ENSCLAG00000008570) #25 CD274 (ENSCLAG00000006370) #26 ENSCLAG00000007197 RIC1 (ENSCLAG00000008085) #27 ERMP1 (ENSCLAG00000004784) #28 MLANA (ENSCLAG00000005918) #29 KIAA2026 (ENSCLAG00000010624) #31 RANBP6 (ENSCLAG00000017716) #32 IL33 (ENSCLAG00000008507) #33 UHRF2 (ENSCLAG00000004646) #34 GLDC (ENSCLAG00000005815) #35 KDM4C (ENSCLAG00000006468) #36 DMAC1 (ENSCLAG00000007861) #37 PTPRD (ENSCLAG00000005730) Naked mole-rat female MODERN SPECIES 3 KCNV2 (ENSHGLG00000015810) #11 ENSHGLG00000015868 #12 ENSHGLG00000016314 ENSHGLG00000042585 ENSHGLG00000019207 ENSHGLG00000018913 #13 ENSHGLG00000015091 #14 ENSHGLG00000032696 ENSHGLG00000017534 #15 SLC1A1 (ENSHGLG00000015155) #16 PLPP6 (ENSHGLG00000038858) #17 SPATA6L (ENSHGLG00000018477) #18 CDC37L1 (ENSHGLG00000012329) #19 ENSHGLG00000018975 #20 ENSHGLG00000016452 #21 JAK2 (ENSHGLG00000011890) #22 ENSHGLG00000019539 #24 PLGRKT (ENSHGLG00000037089) #25 CD274 (ENSHGLG00000016786) #26 RIC1 (ENSHGLG00000011155) #27 ERMP1 (ENSHGLG00000018719) #28 ENSHGLG00000034164 #29 KIAA2026 (ENSHGLG00000018909) #31 RANBP6 (ENSHGLG00000021232) #32 IL33 (ENSHGLG00000017894) #33 ENSHGLG00000016359 ENSHGLG00000048843 UHRF2 (ENSHGLG00000015661) #34 GLDC (ENSHGLG00000017385) #35 ENSHGLG00000042085 ENSHGLG00000050764 Sciuridae ANCESTRAL SPECIES 6 ENSGT00940000156282.a.a #8 ENSGT00940000154821.b #9 ENSGT00520000061590 ENSGT00940000155460 #10 ENSGT00940000157438 #11 ENSGT00390000015757 #12 ENSGT01050000244879.a.a.b #13 ENSGT00940000156896 #14 ENSGT00900000143153 #15 ENSGT00940000155397.b #16 ENSGT00530000063821.b.b #18 ENSGT00940000160907 #17 ENSGT00390000013443.d #19 ENSGT00940000155120 #20 ENSGT00530000063404.a #21 ENSGT00940000155640 #22 ENSGT00940000154434.b #23 ENSGT00940000154434.a.a #24 ENSGT00390000000375 #25 ENSGT00940000161430 #26 ENSGT00940000161373 ENSGT00390000002955 #27 ENSGT00530000063839 #28 ENSGT00390000009531 #29 ENSGT00390000011483 #31 ENSGT00940000162767 #32 ENSGT00390000005185 #33 ENSGT00940000163110 ENSGT00390000008296.b.a.a #34 ENSGT00390000017970 #35 ENSGT00940000154930 #36 Marmotini ANCESTRAL SPECIES 1 ENSGT00940000156282.a.a #8 ENSGT00940000154821.b #9 ENSGT00520000061590 ENSGT00940000155460 #10 ENSGT00940000157438 #11 ENSGT00390000015757 #12 ENSGT01050000244879.a.a.b #13 ENSGT00940000156896 #14 ENSGT00900000143153 #15 ENSGT00940000155397.b #16 ENSGT00530000063821.b.b #18 ENSGT00940000160907 #17 ENSGT00390000013443.d #19 ENSGT00940000155120 #20 ENSGT00530000063404.a #21 ENSGT00940000155640 #22 ENSGT00940000154434.b #23 ENSGT00940000154434.a.a #24 ENSGT00390000000375 #25 ENSGT00940000161430 #26 ENSGT00940000161373 ENSGT00390000002955 #27 ENSGT00530000063839.k #28 ENSGT00390000009531 #29 ENSGT00390000011483 #31 ENSGT00940000162767 #32 ENSGT00390000005185 #33 ENSGT00940000163110 ENSGT00390000008296.b.a.a #34 ENSGT00390000017970 #35 ENSGT00940000154930 #36 Marmotini_b ANCESTRAL SPECIES 88 ENSGT00940000156282.a.a #8 ENSGT00940000154821.b #9 ENSGT00520000061590 ENSGT00940000155460 #10 ENSGT00940000157438 #11 ENSGT00390000015757 #12 ENSGT01050000244879.a.a.b #13 ENSGT00940000156896 #14 ENSGT00900000143153 #15 ENSGT00940000155397.b #16 ENSGT00530000063821.b.b #18 ENSGT00940000160907 #17 ENSGT00390000013443.d #19 ENSGT00940000155120 #20 ENSGT00530000063404.a #21 ENSGT00940000155640 #22 ENSGT00940000154434.b #23 Arctic ground squirrel MODERN SPECIES 994 ENSUPAG00010009459 #22 ENSUPAG00010009452 #23 Squirrel MODERN SPECIES 103 DMRT2 (ENSSTOG00000026909) #8 SMARCA2 (ENSSTOG00000006812) #9 ENSSTOG00000031987 VLDLR (ENSSTOG00000006880) #10 KCNV2 (ENSSTOG00000020003) #11 PUM3 (ENSSTOG00000009586) #12 RFX3 (ENSSTOG00000006974) #13 GLIS3 (ENSSTOG00000000302) #14 ENSSTOG00000031708 #15 SLC1A1 (ENSSTOG00000023583) #16 PLPP6 (ENSSTOG00000025831) #17 SPATA6L (ENSSTOG00000000018) #18 CDC37L1 (ENSSTOG00000000020) #19 AK3 (ENSSTOG00000000021) #20 RCL1 (ENSSTOG00000000023) #21 JAK2 (ENSSTOG00000006679) #22 ENSSTOG00000016298 #23 Alpin marmot MODERN SPECIES 32 ENSMMMG00000002765 VLDLR (ENSMMMG00000002594) #10 ENSMMMG00000002572 KCNV2 (ENSMMMG00000002550) #11 PUM3 (ENSMMMG00000002513) #12 ENSMMMG00000002504 GLIS3 (ENSMMMG00000002430) #14 ENSMMMG00000002416 ENSMMMG00000002405 #15 SLC1A1 (ENSMMMG00000002380) #16 SPATA6L (ENSMMMG00000002361) #18 PLPP6 (ENSMMMG00000002356) #17 CDC37L1 (ENSMMMG00000002322) #19 AK3 (ENSMMMG00000002286) #20 RCL1 (ENSMMMG00000002259) #21 JAK2 (ENSMMMG00000002174) #22 ENSMMMG00000002165 #23 ENSMMMG00000002157 ENSMMMG00000002146 ENSMMMG00000002130 #24 PLGRKT (ENSMMMG00000002117) #25 CD274 (ENSMMMG00000002100) #26 PDCD1LG2 (ENSMMMG00000002085) RIC1 (ENSMMMG00000002031) #27 ENSMMMG00000002013 #28 ENSMMMG00000002003 #28 MLANA (ENSMMMG00000001977) #29 KIAA2026 (ENSMMMG00000001950) #31 RANBP6 (ENSMMMG00000001945) #32 IL33 (ENSMMMG00000001888) #33 ENSMMMG00000001882 Eurasian red squirrel MODERN SPECIES 6 DMRT2 (ENSSVLG00005023918) #8 SMARCA2 (ENSSVLG00005024009) #9 ENSSVLG00005024201 VLDLR (ENSSVLG00005024232) #10 KCNV2 (ENSSVLG00005024318) #11 PUM3 (ENSSVLG00005024338) #12 ENSSVLG00005024401 RFX3 (ENSSVLG00005024420) #13 GLIS3 (ENSSVLG00005024543) #14 SLC1A1 (ENSSVLG00005024569) #16 SPATA6L (ENSSVLG00005024615) #18 PLPP6 (ENSSVLG00005024689) #17 CDC37L1 (ENSSVLG00005024699) #19 ENSSVLG00005024721 #20 RCL1 (ENSSVLG00005024752) #21 JAK2 (ENSSVLG00005024808) #22 INSL6 (ENSSVLG00005024849) #23 ENSSVLG00005024871 PLGRKT (ENSSVLG00005024908) #25 CD274 (ENSSVLG00005024930) #26 PDCD1LG2 (ENSSVLG00005024955) RIC1 (ENSSVLG00005025040) #27 ERMP1 (ENSSVLG00005025117) #28 MLANA (ENSSVLG00005025137) #29 KIAA2026 (ENSSVLG00005025155) #31 ENSSVLG00005025173 ENSSVLG00005025185 ENSSVLG00005025194 IL33 (ENSSVLG00005025230) #33 ENSSVLG00005025276 ENSSVLG00005025282