Artiodactyla ANCESTRAL SPECIES 9 ENSGT00940000163020 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00410000025802.h ##22 ENSGT01030000235238 ENSGT00410000025802.g.b ##22 ENSGT01050000244815.B.a.a ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00910000146917 ENSGT00940000160502 #36 Artiodactyla_a ANCESTRAL SPECIES 9 ENSGT00940000163020 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00410000025802.h ##22 ENSGT01030000235238 ENSGT00410000025802.g.b ##22 ENSGT00960000186859 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00910000146917 ENSGT00940000160502 #36 Artiodactyla_b ANCESTRAL SPECIES 19 ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT01030000235238 ENSGT00410000025802.g.b ##22 ENSGT00960000186859 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Pecora ANCESTRAL SPECIES 38 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b.a.a #29 ENSGT00390000003897.s.b.a.a.b.b ##29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 Percora_a ANCESTRAL SPECIES 35 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b.a.a #29 ENSGT00390000003897.s.b.a.a.b.b ##29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 Bovidae ANCESTRAL SPECIES 33 ENSGT00960000186859 ENSGT00410000025802.g.b ##22 ENSGT01030000235238.f ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b.b ##29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Caprinae ANCESTRAL SPECIES 45 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b.a.a #29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Rambouillet Sheep MODERN SPECIES 205 VAMP7 (ENSOARG00020018024) ENSOARG00020018236 ENSOARG00020018387 ENSOARG00020018399 ENSOARG00020018429 ENSOARG00020018446 ENSOARG00020018476 ENSOARG00020018489 ENSOARG00020018504 ENSOARG00020018525 ENSOARG00020018581 ##22 ENSOARG00020018615 ENSOARG00020018678 ENSOARG00020018703 ENSOARG00020018745 ##22 ENSOARG00020018798 #22 IKBKG (ENSOARG00020018901) #17 G6PD (ENSOARG00020019292) #18 SLC10A3 (ENSOARG00020019833) #20 UBL4A (ENSOARG00020019884) #21 PLXNA3 (ENSOARG00020019933) #23 FAM50A (ENSOARG00020020129) #24 GDI1 (ENSOARG00020020178) #25 ATP6AP1 (ENSOARG00020020475) #26 TAFAZZIN (ENSOARG00020020574) #27 DNASE1L1 (ENSOARG00020021378) #28 RPL10 (ENSOARG00020021458) #29 EMD (ENSOARG00020021549) #30 FLNA (ENSOARG00020021631) #31 TKTL1 (ENSOARG00020021994) #32 OPN1LW (ENSOARG00020022140) #34 Bovinae ANCESTRAL SPECIES 46 ENSGT00960000186859 ENSGT00410000025802.g.b ##22 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b.b ##29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 American bison MODERN SPECIES 2801 ENSBBBG00000023915 LAGE3 (ENSBBBG00000023907) #22 Bos ANCESTRAL SPECIES 36 ENSGT00940000157822 ENSGT00940000154837.f.b.d.b ENSGT00940000159951.d.b.b.a.c.b ENSGT00730000111097.e ENSGT00940000158335 ENSGT00940000163888 ENSGT00940000162668 ENSGT00960000186859 ENSGT00410000025802.g.b ##22 ENSGT00530000063808.a #17 ENSGT01100000263481.n.a.b.b.a.a.b.b ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b.b ##29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Bos_b ANCESTRAL SPECIES 31 ENSGT00940000161825.v.a.a.a ENSGT00390000012182.i.a.b ENSGT00390000012182.i.a.a.b ENSGT00940000161825.v.a.b ENSGT00910000144363.g.a.a.a.a.a.a.a ENSGT00910000144363.g.a.a.a.a.b ENSGT00960000186859 ENSGT00410000025802.g.b ##22 ENSGT00940000160561.d.b ENSGT00530000063808.a #17 ENSGT01100000263481.n.a.b.b.a.a.b.b ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b.b ##29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Hybrid Bos Indicus MODERN SPECIES 315 PABPC5 (ENSBIXG00005006433) ENSBIXG00005014439 ENSBIXG00005014423 ENSBIXG00005014407 ENSBIXG00005005973 ENSBIXG00005006735 ENSBIXG00005014316 ENSBIXG00005001881 ##22 ENSBIXG00005014255 ENSBIXG00005000250 IKBKG (ENSBIXG00005014233) #17 G6PD (ENSBIXG00005014158) #18 ENSBIXG00005014028 SLC10A3 (ENSBIXG00005013999) #20 ENSBIXG00005013979 #21 LAGE3 (ENSBIXG00005006122) #22 PLXNA3 (ENSBIXG00005013935) #23 FAM50A (ENSBIXG00005013872) #24 GDI1 (ENSBIXG00005001727) #25 ATP6AP1 (ENSBIXG00005001714) #26 ENSBIXG00005013746 #27 DNASE1L1 (ENSBIXG00005005490) #28 ENSBIXG00005001627 ##29 EMD (ENSBIXG00005013423) #30 FLNA (ENSBIXG00005013367) #31 TKTL1 (ENSBIXG00005013244) #32 TEX28 (ENSBIXG00005013213) #33 ENSBIXG00005013198 #34 MECP2 (ENSBIXG00005013169) #35 ENSBIXG00005013100 IRAK1 (ENSBIXG00005013081) #36 Cow MODERN SPECIES 177 ENSBTAG00000049678 ENSBTAG00000048281 ENSBTAG00000054052 ENSBTAG00000049584 ENSBTAG00000052652 ENSBTAG00000053848 ##22 ENSBTAG00000055292 ENSBTAG00000048914 ##22 ENSBTAG00000001900 IKBKG (ENSBTAG00000006268) #17 ENSBTAG00000053534 G6PD (ENSBTAG00000019512) #18 FAM3A (ENSBTAG00000012747) #19 SLC10A3 (ENSBTAG00000014333) #20 UBL4A (ENSBTAG00000014331) #21 LAGE3 (ENSBTAG00000054868) #22 PLXNA3 (ENSBTAG00000008552) #23 FAM50A (ENSBTAG00000033032) #24 GDI1 (ENSBTAG00000012125) #25 ATP6AP1 (ENSBTAG00000012117) #26 TAFAZZIN (ENSBTAG00000007456) #27 DNASE1L1 (ENSBTAG00000007455) #28 RPL10 (ENSBTAG00000007454) ##29 EMD (ENSBTAG00000022314) #30 FLNA (ENSBTAG00000011190) #31 TKTL1 (ENSBTAG00000020127) #32 TEX28 (ENSBTAG00000020300) #33 OPN1LW (ENSBTAG00000020299) #34 ENSBTAG00000052492 MECP2 (ENSBTAG00000047855) #35 IRAK1 (ENSBTAG00000016085) #36 Bos_a ANCESTRAL SPECIES 39 ENSGT00940000158335 ENSGT00940000163888 ENSGT00940000162668 ENSGT00940000161825.v.a.a.a ENSGT00940000161825.v.a.b ENSGT00390000001700.a.b.b.a.b ENSGT00910000144363.g.a.a.a.a.a ENSGT00910000144363.g.a.a.a.a.b ENSGT00940000154891 ENSGT00410000025802.g.b ##22 ENSGT00530000063808.a #17 ENSGT01100000263481.n.a.b.b.a.a.b.b ENSGT00530000063435.a #18 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.a ##29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Domestic yak MODERN SPECIES 69 ENSBGRG00000026338 ENSBGRG00000026335 ENSBGRG00000026333 ENSBGRG00000026332 ENSBGRG00000026328 ENSBGRG00000026327 ENSBGRG00000026324 ENSBGRG00000026319 ENSBGRG00000026315 ENSBGRG00000026304 ##22 IKBKG (ENSBGRG00000026284) #17 ENSBGRG00000026272 G6PD (ENSBGRG00000026248) #18 SLC10A3 (ENSBGRG00000026237) #20 UBL4A (ENSBGRG00000026234) #21 ENSBGRG00000026228 #22 PLXNA3 (ENSBGRG00000024820) #23 FAM50A (ENSBGRG00000024395) #24 ATP6AP1 (ENSBGRG00000024299) #26 TAFAZZIN (ENSBGRG00000024079) #27 DNASE1L1 (ENSBGRG00000024010) #28 ENSBGRG00000023896 ##29 EMD (ENSBGRG00000023778) #30 GDI1 (ENSBGRG00000023696) #25 FLNA (ENSBGRG00000023487) #31 TKTL1 (ENSBGRG00000023403) #32 ENSBGRG00000023305 #34 MECP2 (ENSBGRG00000023220) #35 IRAK1 (ENSBGRG00000023042) #36 TMEM187 (ENSBGRG00000023012) #37 HCFC1 (ENSBGRG00000021965) Wild yak MODERN SPECIES 2585 IKBKG (ENSBMUG00000026904) #17 G6PD (ENSBMUG00000026905) #18 SLC10A3 (ENSBMUG00000026906) #20 UBL4A (ENSBMUG00000026907) #21 LAGE3 (ENSBMUG00000026908) #22 PLXNA3 (ENSBMUG00000026909) #23 FAM50A (ENSBMUG00000026910) #24 GDI1 (ENSBMUG00000026911) #25 ATP6AP1 (ENSBMUG00000026912) #26 TAFAZZIN (ENSBMUG00000026914) #27 DNASE1L1 (ENSBMUG00000026915) #28 ENSBMUG00000026916 ##29 Siberian musk deer MODERN SPECIES 14 ENSMMSG00000013493 ##22 IKBKG (ENSMMSG00000013522) #17 G6PD (ENSMMSG00000013593) #18 ENSMMSG00000013656 #19 SLC10A3 (ENSMMSG00000013825) #20 UBL4A (ENSMMSG00000013839) #21 LAGE3 (ENSMMSG00000013858) #22 PLXNA3 (ENSMMSG00000013876) #23 ENSMMSG00000013933 #24 GDI1 (ENSMMSG00000013993) #25 ATP6AP1 (ENSMMSG00000014033) #26 TAFAZZIN (ENSMMSG00000014064) #27 ENSMMSG00000014152 #28 ENSMMSG00000014213 #29 EMD (ENSMMSG00000014247) #30 FLNA (ENSMMSG00000014357) #31 TKTL1 (ENSMMSG00000015211) #32 TEX28 (ENSMMSG00000015249) #33 ENSMMSG00000015261 #34 ENSMMSG00000015287 #35 IRAK1 (ENSMMSG00000015351) #36 TMEM187 (ENSMMSG00000015428) #37 Yarkand deer MODERN SPECIES 1323 L1CAM (ENSCHYG00000025877) AVPR2 (ENSCHYG00000025838) ARHGAP4 (ENSCHYG00000025566) ENSCHYG00000025281 RENBP (ENSCHYG00000025248) HCFC1 (ENSCHYG00000025112) IRAK1 (ENSCHYG00000024907) #36 MECP2 (ENSCHYG00000024843) #35 ENSCHYG00000024807 #34 TEX28 (ENSCHYG00000024783) #33 TKTL1 (ENSCHYG00000024748) #32 EMD (ENSCHYG00000024666) #30 IKBKG (ENSCHYG00000024518) #17 G6PD (ENSCHYG00000024413) #18 ENSCHYG00000024202 #19 LAGE3 (ENSCHYG00000024139) #22 PLXNA3 (ENSCHYG00000023890) #23 GDI1 (ENSCHYG00000023645) #25 ATP6AP1 (ENSCHYG00000023535) #26 TAFAZZIN (ENSCHYG00000022770) #27 DNASE1L1 (ENSCHYG00000022608) #28 ENSCHYG00000022474 #29 FLNA (ENSCHYG00000021422) #31 ENSCHYG00000021292 ENSCHYG00000021269 ENSCHYG00000021240 ##22 ENSCHYG00000021194 ENSCHYG00000021132 ##22 GAB3 (ENSCHYG00000020865) DKC1 (ENSCHYG00000020555) MPP1 (ENSCHYG00000020123) Cetacea ANCESTRAL SPECIES 19 ENSGT00390000012647 ENSGT00940000154783.f.d.a ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00410000025802.g.b ##22 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A.n #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Odontoceti ANCESTRAL SPECIES 19 ENSGT00390000012647 ENSGT00940000154783.f.d.a ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00410000025802.g.b ##22 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A.m #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034 #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Sperm whale DUPLICATION Sperm whale MODERN SPECIES 13 RENBP (ENSPCTG00005021884) HCFC1 (ENSPCTG00005021915) ENSPCTG00005022009 #36 MECP2 (ENSPCTG00005022045) #35 ENSPCTG00005022067 #34 TEX28 (ENSPCTG00005022073) #33 ENSPCTG00005022081 TKTL1 (ENSPCTG00005012476) #32 FLNA (ENSPCTG00005012993) #31 EMD (ENSPCTG00005013517) #30 RPL10 (ENSPCTG00005013674) #29 DNASE1L1 (ENSPCTG00005013759) #28 FAM3A (ENSPCTG00005013803) #18 SLC10A3 (ENSPCTG00005014048) #20 UBL4A (ENSPCTG00005014090) #21 ENSPCTG00005014136 #22 PLXNA3 (ENSPCTG00005014209) #23 FAM50A (ENSPCTG00005014324) #24 GDI1 (ENSPCTG00005014385) #25 IKBKG (ENSPCTG00005014430) #17 ENSPCTG00005014674 ##22 GAB3 (ENSPCTG00005014727) DKC1 (ENSPCTG00005014862) MPP1 (ENSPCTG00005014958) SMIM9 (ENSPCTG00005015221) F8 (ENSPCTG00005015296) ENSPCTG00005015667 F8A1 (ENSPCTG00005015687) FUNDC2 (ENSPCTG00005015711) CMC4 (ENSPCTG00005015746) MTCP1 (ENSPCTG00005015780) Sperm whale MODERN SPECIES 17 ANKS1B (ENSPCTG00005007818) APAF1 (ENSPCTG00005007208) IKBIP (ENSPCTG00005007080) SLC25A3 (ENSPCTG00005007003) TMPO (ENSPCTG00005006842) ENSPCTG00005006737 NEDD1 (ENSPCTG00005006658) ENSPCTG00005006592 CDK17 (ENSPCTG00005006524) ELK3 (ENSPCTG00005006435) LTA4H (ENSPCTG00005006181) HAL (ENSPCTG00005005851) AMDHD1 (ENSPCTG00005005792) CCDC38 (ENSPCTG00005005736) SNRPF (ENSPCTG00005005710) ENSPCTG00005005682 #22 NTN4 (ENSPCTG00005005620) USP44 (ENSPCTG00005005553) METAP2 (ENSPCTG00005005341) ENSPCTG00005005290 VEZT (ENSPCTG00005005249) FGD6 (ENSPCTG00005005127) NR2C1 (ENSPCTG00005005039) NDUFA12 (ENSPCTG00005005007) ENSPCTG00005004984 TMCC3 (ENSPCTG00005004963) CEP83 (ENSPCTG00005022031) PLXNC1 (ENSPCTG00005022010) MRPL42 (ENSPCTG00005021997) SOCS2 (ENSPCTG00005021994) CRADD (ENSPCTG00005021988) Odontoceti_a ANCESTRAL SPECIES 21 ENSGT00390000012647 ENSGT00940000154783.f.d.a ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00960000186859 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A.m #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034.i #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Dolphin MODERN SPECIES 5087 SLC10A3 (ENSTTRG00000003120) #20 LAGE3 (ENSTTRG00000003119) #22 Odontoceti_b ANCESTRAL SPECIES 17 ENSGT00390000012647 ENSGT00940000154783.f.d.a ENSGT00390000016992.x ENSGT00940000163020.y ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00960000186859 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A.m #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034.i #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 Monodontidae ANCESTRAL SPECIES 19 ENSGT00390000012647 ENSGT00940000154783.f.d.a ENSGT00390000016992.w ENSGT00940000163020.z ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00960000186859 ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A.m #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00390000002034.i #30 ENSGT00940000153588.b #31 ENSGT00940000162426 #32 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00940000160502 #36 ENSGT00390000011272 #37 ENSGT00940000161383 Beluga whale MODERN SPECIES 139 MTCP1 (ENSDLEG00000012008) CMC4 (ENSDLEG00000011999) FUNDC2 (ENSDLEG00000011985) ENSDLEG00000011977 ENSDLEG00000011965 F8 (ENSDLEG00000011690) MPP1 (ENSDLEG00000011647) DKC1 (ENSDLEG00000011603) GAB3 (ENSDLEG00000011559) ENSDLEG00000011545 ENSDLEG00000011523 IKBKG (ENSDLEG00000011500) #17 G6PD (ENSDLEG00000011468) #18 FAM3A (ENSDLEG00000011447) #19 UBL4A (ENSDLEG00000011413) #20 LAGE3 (ENSDLEG00000011398) #22 PLXNA3 (ENSDLEG00000011331) #23 FAM50A (ENSDLEG00000011270) #24 GDI1 (ENSDLEG00000011245) #25 ATP6AP1 (ENSDLEG00000011212) #26 TAZ (ENSDLEG00000011183) #27 DNASE1L1 (ENSDLEG00000011154) #28 ENSDLEG00000011125 #29 EMD (ENSDLEG00000011102) #30 FLNA (ENSDLEG00000010999) #31 TKTL1 (ENSDLEG00000010974) #32 ENSDLEG00000010916 #34 MECP2 (ENSDLEG00000010908) #35 IRAK1 (ENSDLEG00000010892) #36 TMEM187 (ENSDLEG00000010884) #37 HCFC1 (ENSDLEG00000010826) Narwhal MODERN SPECIES 309 IKBKG (ENSMMNG00015013582) #17 G6PD (ENSMMNG00015013556) #18 FAM3A (ENSMMNG00015013509) #19 SLC10A3 (ENSMMNG00015013481) #20 UBL4A (ENSMMNG00015013467) #21 LAGE3 (ENSMMNG00015013456) #22 PLXNA3 (ENSMMNG00015013425) #23 ENSMMNG00015013390 #24 GDI1 (ENSMMNG00015013359) #25 ATP6AP1 (ENSMMNG00015013337) #26 ENSMMNG00015013329 ENSMMNG00015013313 #27 DNASE1L1 (ENSMMNG00015013295) #28 ENSMMNG00015013277 #29 ENSMMNG00015013213 #30 FLNA (ENSMMNG00015013139) #31 TKTL1 (ENSMMNG00015013076) #32 ENSMMNG00015013056 ENSMMNG00015013048 ENSMMNG00015013034 #34 MECP2 (ENSMMNG00015012982) #35 Vaquita DUPLICATION Vaquita MODERN SPECIES 34 ENSPSNG00000022480 ENSPSNG00000022476 ENSPSNG00000022473 F8 (ENSPSNG00000022465) SMIM9 (ENSPSNG00000022452) MPP1 (ENSPSNG00000022439) DKC1 (ENSPSNG00000022426) GAB3 (ENSPSNG00000022421) ENSPSNG00000022416 #22 ENSPSNG00000022414 ENSPSNG00000022407 IKBKG (ENSPSNG00000022395) #17 G6PD (ENSPSNG00000022382) #18 FAM3A (ENSPSNG00000022374) #19 SLC10A3 (ENSPSNG00000022364) #20 ENSPSNG00000022354 #22 PLXNA3 (ENSPSNG00000022341) #23 ENSPSNG00000022331 #24 GDI1 (ENSPSNG00000022323) #25 ATP6AP1 (ENSPSNG00000022314) #26 TAFAZZIN (ENSPSNG00000022306) #27 DNASE1L1 (ENSPSNG00000022297) #28 ENSPSNG00000022280 #29 ENSPSNG00000022266 #30 FLNA (ENSPSNG00000022089) #31 TKTL1 (ENSPSNG00000021994) #32 ENSPSNG00000021965 ENSPSNG00000021951 ENSPSNG00000021942 ENSPSNG00000021927 TEX28 (ENSPSNG00000021914) #33 Vaquita MODERN SPECIES 34 ENSPSNG00000022266 #30 ENSPSNG00000022280 #29 DNASE1L1 (ENSPSNG00000022297) #28 TAFAZZIN (ENSPSNG00000022306) #27 ATP6AP1 (ENSPSNG00000022314) #26 GDI1 (ENSPSNG00000022323) #25 ENSPSNG00000022331 #24 PLXNA3 (ENSPSNG00000022341) #23 ENSPSNG00000022354 #22 SLC10A3 (ENSPSNG00000022364) #20 FAM3A (ENSPSNG00000022374) #19 G6PD (ENSPSNG00000022382) #18 IKBKG (ENSPSNG00000022395) #17 ENSPSNG00000022407 ENSPSNG00000022414 ENSPSNG00000022416 #22 GAB3 (ENSPSNG00000022421) DKC1 (ENSPSNG00000022426) MPP1 (ENSPSNG00000022439) SMIM9 (ENSPSNG00000022452) F8 (ENSPSNG00000022465) ENSPSNG00000022473 ENSPSNG00000022476 ENSPSNG00000022480 MTCP1 (ENSPSNG00000022484) CMC4 (ENSPSNG00000013473) BRCC3 (ENSPSNG00000013597) ENSPSNG00000013729 VBP1 (ENSPSNG00000013871) RAB39B (ENSPSNG00000014023) ENSPSNG00000014068 Blue whale MODERN SPECIES 40 ENSBMSG00010021604 ENSBMSG00010021592 ENSBMSG00010021588 F8 (ENSBMSG00010021526) SMIM9 (ENSBMSG00010021513) MPP1 (ENSBMSG00010021484) DKC1 (ENSBMSG00010021430) ENSBMSG00010021407 ENSBMSG00010021382 ENSBMSG00010021370 IKBKG (ENSBMSG00010021344) #17 G6PD (ENSBMSG00010021326) #18 FAM3A (ENSBMSG00010021308) #19 SLC10A3 (ENSBMSG00010021301) #20 UBL4A (ENSBMSG00010021291) #21 LAGE3 (ENSBMSG00010021278) #22 PLXNA3 (ENSBMSG00010021267) #23 ENSBMSG00010021250 #24 GDI1 (ENSBMSG00010021239) #25 ATP6AP1 (ENSBMSG00010021220) #26 TAFAZZIN (ENSBMSG00010021182) #27 DNASE1L1 (ENSBMSG00010021173) #28 ENSBMSG00010021148 #29 ENSBMSG00010021119 #32 ENSBMSG00010021096 #32 EMD (ENSBMSG00010021072) #30 FLNA (ENSBMSG00010020850) #31 ENSBMSG00010020592 #32 TEX28 (ENSBMSG00010020541) #33 ENSBMSG00010020090 #34 MECP2 (ENSBMSG00010019964) #35 Camelidae ANCESTRAL SPECIES ENSGT00410000025802.g.a #22 Alpaca MODERN SPECIES 4089 ENSVPAG00000006669 #22 Arabian camel MODERN SPECIES 204 TMEM187 (ENSCDRG00005011270) #37 IRAK1 (ENSCDRG00005011306) #36 ENSCDRG00005011350 MECP2 (ENSCDRG00005011374) #35 ENSCDRG00005011483 #34 TEX28 (ENSCDRG00005011542) #33 TKTL1 (ENSCDRG00005011584) #32 FLNA (ENSCDRG00005011684) #31 ENSCDRG00005011914 #30 ENSCDRG00005012077 #29 DNASE1L1 (ENSCDRG00005012179) #28 TAZ (ENSCDRG00005012375) #27 ATP6AP1 (ENSCDRG00005012618) #26 GDI1 (ENSCDRG00005012702) #25 FAM50A (ENSCDRG00005012822) #24 LAGE3 (ENSCDRG00005015984) #22 SLC10A3 (ENSCDRG00005016014) #20 FAM3A (ENSCDRG00005016065) #19 G6PD (ENSCDRG00005016281) #18 IKBKG (ENSCDRG00005016363) #17 ENSCDRG00005016489 ENSCDRG00005016521 ##22 ENSCDRG00005016563 ##22 ENSCDRG00005016586 ##22 GAB3 (ENSCDRG00005016636) ENSCDRG00005017097 ##22 DKC1 (ENSCDRG00005017117) MPP1 (ENSCDRG00005017184) SMIM9 (ENSCDRG00005017392) F8 (ENSCDRG00005017422) ENSCDRG00005017538 Suina DUPLICATION Suina ANCESTRAL SPECIES ENSGT00940000159275 ENSGT00940000154664 ENSGT00390000012959.a ENSGT00940000156331 ENSGT00940000153814.b ENSGT00940000156395 ENSGT00940000162183 ENSGT00390000014792 ENSGT00900000143461.a ENSGT00390000015789.d.b.b ENSGT00390000015789.c.a.b ENSGT00940000163247 ENSGT00940000160681.C ENSGT00940000154602.b ENSGT00940000154602.a ENSGT00410000025802.g.a.e #22 ENSGT00940000155258.t ENSGT00940000154403.a.a ENSGT00940000154403.a.b ENSGT00940000161311 ENSGT00940000161787 ENSGT00940000161991 ENSGT00940000162088 ENSGT00940000153980.p ENSGT00940000163841 ENSGT00940000153980.o ENSGT00950000183407 ENSGT00940000163658 ENSGT00940000159486.`b.a.a.a ENSGT00940000160443.b ENSGT00940000160443.a Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 941 ACLY (ENSCWAG00000013042) KLHL11 (ENSCWAG00000012990) KLHL10 (ENSCWAG00000012934) NT5C3B (ENSCWAG00000012755) FKBP10 (ENSCWAG00000012699) P3H4 (ENSCWAG00000012602) JUP (ENSCWAG00000012556) HAP1 (ENSCWAG00000012350) GAST (ENSCWAG00000012317) ENSCWAG00000012296 ENSCWAG00000012269 ENSCWAG00000012256 ENSCWAG00000012198 KRT17 (ENSCWAG00000012112) KRT16 (ENSCWAG00000012005) ENSCWAG00000011954 #22 KRT14 (ENSCWAG00000011785) ENSCWAG00000011736 #22 KRT19 (ENSCWAG00000018237) KRT15 (ENSCWAG00000018128) ENSCWAG00000018009 KRT36 (ENSCWAG00000017896) KRT35 (ENSCWAG00000017776) KRT32 (ENSCWAG00000017718) ENSCWAG00000017665 ENSCWAG00000017610 ENSCWAG00000017530 ENSCWAG00000017481 ENSCWAG00000017369 ENSCWAG00000017284 ENSCWAG00000017197 Chacoan peccary MODERN SPECIES 941 KLHL10 (ENSCWAG00000012934) NT5C3B (ENSCWAG00000012755) FKBP10 (ENSCWAG00000012699) P3H4 (ENSCWAG00000012602) JUP (ENSCWAG00000012556) HAP1 (ENSCWAG00000012350) GAST (ENSCWAG00000012317) ENSCWAG00000012296 ENSCWAG00000012269 ENSCWAG00000012256 ENSCWAG00000012198 KRT17 (ENSCWAG00000012112) KRT16 (ENSCWAG00000012005) ENSCWAG00000011954 #22 KRT14 (ENSCWAG00000011785) ENSCWAG00000011736 #22 KRT19 (ENSCWAG00000018237) KRT15 (ENSCWAG00000018128) ENSCWAG00000018009 KRT36 (ENSCWAG00000017896) KRT35 (ENSCWAG00000017776) KRT32 (ENSCWAG00000017718) ENSCWAG00000017665 ENSCWAG00000017610 ENSCWAG00000017530 ENSCWAG00000017481 ENSCWAG00000017369 ENSCWAG00000017284 ENSCWAG00000017197 ENSCWAG00000017174 ENSCWAG00000017141 Pig MODERN SPECIES 3 ACLY (ENSSSCG00000017421) KLHL11 (ENSSSCG00000032404) KLHL10 (ENSSSCG00000033629) NT5C3B (ENSSSCG00000034779) FKBP10 (ENSSSCG00000017422) P3H4 (ENSSSCG00000017429) JUP (ENSSSCG00000017428) HAP1 (ENSSSCG00000017427) GAST (ENSSSCG00000021910) ENSSSCG00000034799 EIF1 (ENSSSCG00000017430) ENSSSCG00000017433 KRT17 (ENSSSCG00000056910) ENSSSCG00000055849 ENSSSCG00000017448 ENSSSCG00000017446 #22 KRT19 (ENSSSCG00000058816) KRT15 (ENSSSCG00000017444) ENSSSCG00000017445 KRT36 (ENSSSCG00000017437) KRT35 (ENSSSCG00000017438) KRT32 (ENSSSCG00000017439) KRT31 (ENSSSCG00000021668) ENSSSCG00000017441 ENSSSCG00000021755 ENSSSCG00000030350 KRTAP17-1 (ENSSSCG00000041928) ENSSSCG00000052790 KRTAP29-1 (ENSSSCG00000047939) ENSSSCG00000046804 ENSSSCG00000039008 Suina ANCESTRAL SPECIES 7 ENSGT00950000183068.a.a ENSGT00390000000360.q.a ENSGT00390000006885.a ENSGT00390000012647 ENSGT00940000154783.f ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT00410000025802.g.b ##22 ENSGT01050000244815.B.a.a ENSGT00530000063808.a #17 ENSGT00530000063435.a #18 ENSGT00950000183004.a.a.a.b #19 ENSGT00950000182808.b.b #20 ENSGT00730000111022 #21 ENSGT00410000025802.g.a.f #22 ENSGT01050000244850.A.a #23 ENSGT00390000004735.A #24 ENSGT00950000182994.B.a.a.a #25 ENSGT00940000156650 #26 ENSGT00390000018621 #27 ENSGT00950000182846.a.a.a.a.a #28 ENSGT00390000003897.s.b.a.a.b #29 ENSGT00940000153588.b #31 ENSGT00390000002034 #30 ENSGT00940000162426 #32 ENSGT00940000162843 #33 ENSGT01030000234549.a.a.a.b #34 ENSGT00530000063687.b.b.b #35 ENSGT00910000146917 ENSGT00940000160502 #36 Chacoan peccary MODERN SPECIES 44 ENSCWAG00000000488 ENSCWAG00000000473 SMIM9 (ENSCWAG00000000458) MPP1 (ENSCWAG00000000412) DKC1 (ENSCWAG00000000314) GAB3 (ENSCWAG00000000272) ENSCWAG00000000236 ##22 ENSCWAG00000000223 ENSCWAG00000000203 IKBKG (ENSCWAG00000000145) #17 G6PD (ENSCWAG00000000077) #18 FAM3A (ENSCWAG00000000031) #19 SLC10A3 (ENSCWAG00000000012) #20 UBL4A (ENSCWAG00000000008) #21 ENSCWAG00000021354 ENSCWAG00000021347 #22 PLXNA3 (ENSCWAG00000021299) #23 FAM50A (ENSCWAG00000021283) #24 GDI1 (ENSCWAG00000021263) #25 ATP6AP1 (ENSCWAG00000021247) #26 TAFAZZIN (ENSCWAG00000021221) #27 DNASE1L1 (ENSCWAG00000021201) #28 ENSCWAG00000021182 #29 Pig MODERN SPECIES 300 CMC4 (ENSSSCG00000062015) FUNDC2 (ENSSSCG00000012817) ENSSSCG00000054901 ENSSSCG00000057758 SMIM9 (ENSSSCG00000055917) F8 (ENSSSCG00000012822) DKC1 (ENSSSCG00000012823) GAB3 (ENSSSCG00000012824) ENSSSCG00000049540 ##22 ENSSSCG00000012827 IKBKG (ENSSSCG00000012825) #17 G6PD (ENSSSCG00000025108) #18 FAM3A (ENSSSCG00000028934) #19 SLC10A3 (ENSSSCG00000025766) #20 ENSSSCG00000057536 #21 ENSSSCG00000032959 #22 PLXNA3 (ENSSSCG00000023483) #23 FAM50A (ENSSSCG00000025303) #24 GDI1 (ENSSSCG00000030421) #25 ATP6AP1 (ENSSSCG00000037310) #26 TAFAZZIN (ENSSSCG00000039655) #27 DNASE1L1 (ENSSSCG00000037032) #28 RPL10 (ENSSSCG00000035997) #29 FLNA (ENSSSCG00000033299) #31 EMD (ENSSSCG00000037777) #30 TKTL1 (ENSSSCG00000029443) #32 TEX28 (ENSSSCG00000029513) #33 ENSSSCG00000029523 #34 MECP2 (ENSSSCG00000034742) #35 ENSSSCG00000059337 IRAK1 (ENSSSCG00000012795) #36