Chordata	ANCESTRAL SPECIES																	ENSGT00410000025802 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00410000025802 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00410000025802 #22
Euteleostomi	ANCESTRAL SPECIES	929																ENSGT00410000025802 #22	ENSGT00940000155864.b	ENSGT00940000155657
Sarcopterygii	ANCESTRAL SPECIES	817																ENSGT00410000025802 #22	ENSGT00940000155864.b	ENSGT00940000155657
Amniota	ANCESTRAL SPECIES	40													ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b #29	ENSGT00940000153588.b #31	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.s.a ##29	ENSGT00390000002034 #30	ENSGT00940000164911	ENSGT00940000154471.a.a	ENSGT00940000161969	ENSGT00940000162843 #33
Mammalia	ANCESTRAL SPECIES	46												ENSGT00940000165180	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.a ##29	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.s.b #29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000164911	ENSGT00940000154471.a.a	ENSGT00940000161969	ENSGT00940000162843 #33
Theria	ANCESTRAL SPECIES	46	ENSGT00390000000360	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01030000240148	ENSGT00390000000950.c.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.a ##29	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.s.b #29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000154471.a.a	ENSGT00940000161969	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34
Eutheria	DUPLICATION
Eutheria	DUPLICATION
Eutheria	ANCESTRAL SPECIES	16	ENSGT00940000160294	ENSGT00390000016992	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.i.a	ENSGT01100000263574.b.i.b	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000235238	ENSGT00410000025802.g.b ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000235238	ENSGT00410000025802.g.b ##22	ENSGT00960000186859	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01030000235238	ENSGT00410000025802.g.b ##22	ENSGT00960000186859	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Pecora	ANCESTRAL SPECIES	38											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.a.a #29	ENSGT00390000003897.s.b.a.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36
Percora_a	ANCESTRAL SPECIES	35											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.a.a #29	ENSGT00390000003897.s.b.a.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36
Bovidae	ANCESTRAL SPECIES	33								ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238.f	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Caprinae	ANCESTRAL SPECIES	45											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.a.a #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Rambouillet Sheep	MODERN SPECIES	205	VAMP7 (ENSOARG00020018024)	ENSOARG00020018236	ENSOARG00020018387	ENSOARG00020018399	ENSOARG00020018429	ENSOARG00020018446	ENSOARG00020018476	ENSOARG00020018489	ENSOARG00020018504	ENSOARG00020018525	ENSOARG00020018581 ##22	ENSOARG00020018615	ENSOARG00020018678	ENSOARG00020018703	ENSOARG00020018745 ##22	ENSOARG00020018798 #22	IKBKG (ENSOARG00020018901) #17	G6PD (ENSOARG00020019292) #18	SLC10A3 (ENSOARG00020019833) #20	UBL4A (ENSOARG00020019884) #21	PLXNA3 (ENSOARG00020019933) #23	FAM50A (ENSOARG00020020129) #24	GDI1 (ENSOARG00020020178) #25	ATP6AP1 (ENSOARG00020020475) #26	TAFAZZIN (ENSOARG00020020574) #27	DNASE1L1 (ENSOARG00020021378) #28	RPL10 (ENSOARG00020021458) #29	EMD (ENSOARG00020021549) #30	FLNA (ENSOARG00020021631) #31	TKTL1 (ENSOARG00020021994) #32	OPN1LW (ENSOARG00020022140) #34
American bison	MODERN SPECIES	2801															ENSBBBG00000023915	LAGE3 (ENSBBBG00000023907) #22
Bos_a	ANCESTRAL SPECIES	39	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00940000161825.v.a.a.a	ENSGT00940000161825.v.a.b	ENSGT00390000001700.a.b.b.a.b	ENSGT00910000144363.g.a.a.a.a.a	ENSGT00910000144363.g.a.a.a.a.b	ENSGT00940000154891	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #18	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.a ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Siberian musk deer	MODERN SPECIES	14										ENSMMSG00000013493 ##22	IKBKG (ENSMMSG00000013522) #17	G6PD (ENSMMSG00000013593) #18	ENSMMSG00000013656 #19	SLC10A3 (ENSMMSG00000013825) #20	UBL4A (ENSMMSG00000013839) #21	LAGE3 (ENSMMSG00000013858) #22	PLXNA3 (ENSMMSG00000013876) #23	ENSMMSG00000013933 #24	GDI1 (ENSMMSG00000013993) #25	ATP6AP1 (ENSMMSG00000014033) #26	TAFAZZIN (ENSMMSG00000014064) #27	ENSMMSG00000014152 #28	ENSMMSG00000014213 #29	EMD (ENSMMSG00000014247) #30	FLNA (ENSMMSG00000014357) #31	TKTL1 (ENSMMSG00000015211) #32	TEX28 (ENSMMSG00000015249) #33	ENSMMSG00000015261 #34	ENSMMSG00000015287 #35	IRAK1 (ENSMMSG00000015351) #36	TMEM187 (ENSMMSG00000015428) #37
Cetacea	ANCESTRAL SPECIES	19	ENSGT00390000012647	ENSGT00940000154783.f.d.a	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A.n #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00390000012647	ENSGT00940000154783.f.d.a	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A.m #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	13	RENBP (ENSPCTG00005021884)	HCFC1 (ENSPCTG00005021915)	ENSPCTG00005022009 #36	MECP2 (ENSPCTG00005022045) #35	ENSPCTG00005022067 #34	TEX28 (ENSPCTG00005022073) #33	ENSPCTG00005022081	TKTL1 (ENSPCTG00005012476) #32	FLNA (ENSPCTG00005012993) #31	EMD (ENSPCTG00005013517) #30	RPL10 (ENSPCTG00005013674) #29	DNASE1L1 (ENSPCTG00005013759) #28	FAM3A (ENSPCTG00005013803) #18	SLC10A3 (ENSPCTG00005014048) #20	UBL4A (ENSPCTG00005014090) #21	ENSPCTG00005014136 #22	PLXNA3 (ENSPCTG00005014209) #23	FAM50A (ENSPCTG00005014324) #24	GDI1 (ENSPCTG00005014385) #25	IKBKG (ENSPCTG00005014430) #17	ENSPCTG00005014674 ##22	GAB3 (ENSPCTG00005014727)	DKC1 (ENSPCTG00005014862)	MPP1 (ENSPCTG00005014958)	SMIM9 (ENSPCTG00005015221)	F8 (ENSPCTG00005015296)	ENSPCTG00005015667	F8A1 (ENSPCTG00005015687)	FUNDC2 (ENSPCTG00005015711)	CMC4 (ENSPCTG00005015746)	MTCP1 (ENSPCTG00005015780)
Sperm whale	MODERN SPECIES	17	ANKS1B (ENSPCTG00005007818)	APAF1 (ENSPCTG00005007208)	IKBIP (ENSPCTG00005007080)	SLC25A3 (ENSPCTG00005007003)	TMPO (ENSPCTG00005006842)	ENSPCTG00005006737	NEDD1 (ENSPCTG00005006658)	ENSPCTG00005006592	CDK17 (ENSPCTG00005006524)	ELK3 (ENSPCTG00005006435)	LTA4H (ENSPCTG00005006181)	HAL (ENSPCTG00005005851)	AMDHD1 (ENSPCTG00005005792)	CCDC38 (ENSPCTG00005005736)	SNRPF (ENSPCTG00005005710)	ENSPCTG00005005682 #22	NTN4 (ENSPCTG00005005620)	USP44 (ENSPCTG00005005553)	METAP2 (ENSPCTG00005005341)	ENSPCTG00005005290	VEZT (ENSPCTG00005005249)	FGD6 (ENSPCTG00005005127)	NR2C1 (ENSPCTG00005005039)	NDUFA12 (ENSPCTG00005005007)	ENSPCTG00005004984	TMCC3 (ENSPCTG00005004963)	CEP83 (ENSPCTG00005022031)	PLXNC1 (ENSPCTG00005022010)	MRPL42 (ENSPCTG00005021997)	SOCS2 (ENSPCTG00005021994)	CRADD (ENSPCTG00005021988)
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00390000012647	ENSGT00940000154783.f.d.a	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00960000186859	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A.m #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034.i #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Dolphin	MODERN SPECIES	5087															SLC10A3 (ENSTTRG00000003120) #20	LAGE3 (ENSTTRG00000003119) #22
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00390000012647	ENSGT00940000154783.f.d.a	ENSGT00390000016992.x	ENSGT00940000163020.y	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00960000186859	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A.m #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034.i #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00390000012647	ENSGT00940000154783.f.d.a	ENSGT00390000016992.w	ENSGT00940000163020.z	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00960000186859	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A.m #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034.i #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37	ENSGT00940000161383
Beluga whale	MODERN SPECIES	139	MTCP1 (ENSDLEG00000012008)	CMC4 (ENSDLEG00000011999)	FUNDC2 (ENSDLEG00000011985)	ENSDLEG00000011977	ENSDLEG00000011965	F8 (ENSDLEG00000011690)	MPP1 (ENSDLEG00000011647)	DKC1 (ENSDLEG00000011603)	GAB3 (ENSDLEG00000011559)	ENSDLEG00000011545	ENSDLEG00000011523	IKBKG (ENSDLEG00000011500) #17	G6PD (ENSDLEG00000011468) #18	FAM3A (ENSDLEG00000011447) #19	UBL4A (ENSDLEG00000011413) #20	LAGE3 (ENSDLEG00000011398) #22	PLXNA3 (ENSDLEG00000011331) #23	FAM50A (ENSDLEG00000011270) #24	GDI1 (ENSDLEG00000011245) #25	ATP6AP1 (ENSDLEG00000011212) #26	TAZ (ENSDLEG00000011183) #27	DNASE1L1 (ENSDLEG00000011154) #28	ENSDLEG00000011125 #29	EMD (ENSDLEG00000011102) #30	FLNA (ENSDLEG00000010999) #31	TKTL1 (ENSDLEG00000010974) #32	ENSDLEG00000010916 #34	MECP2 (ENSDLEG00000010908) #35	IRAK1 (ENSDLEG00000010892) #36	TMEM187 (ENSDLEG00000010884) #37	HCFC1 (ENSDLEG00000010826)
Narwhal	MODERN SPECIES	309											IKBKG (ENSMMNG00015013582) #17	G6PD (ENSMMNG00015013556) #18	FAM3A (ENSMMNG00015013509) #19	SLC10A3 (ENSMMNG00015013481) #20	UBL4A (ENSMMNG00015013467) #21	LAGE3 (ENSMMNG00015013456) #22	PLXNA3 (ENSMMNG00015013425) #23	ENSMMNG00015013390 #24	GDI1 (ENSMMNG00015013359) #25	ATP6AP1 (ENSMMNG00015013337) #26	ENSMMNG00015013329	ENSMMNG00015013313 #27	DNASE1L1 (ENSMMNG00015013295) #28	ENSMMNG00015013277 #29	ENSMMNG00015013213 #30	FLNA (ENSMMNG00015013139) #31	TKTL1 (ENSMMNG00015013076) #32	ENSMMNG00015013056	ENSMMNG00015013048	ENSMMNG00015013034 #34	MECP2 (ENSMMNG00015012982) #35
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	34	ENSPSNG00000022480	ENSPSNG00000022476	ENSPSNG00000022473	F8 (ENSPSNG00000022465)	SMIM9 (ENSPSNG00000022452)	MPP1 (ENSPSNG00000022439)	DKC1 (ENSPSNG00000022426)	GAB3 (ENSPSNG00000022421)	ENSPSNG00000022416 #22	ENSPSNG00000022414	ENSPSNG00000022407	IKBKG (ENSPSNG00000022395) #17	G6PD (ENSPSNG00000022382) #18	FAM3A (ENSPSNG00000022374) #19	SLC10A3 (ENSPSNG00000022364) #20	ENSPSNG00000022354 #22	PLXNA3 (ENSPSNG00000022341) #23	ENSPSNG00000022331 #24	GDI1 (ENSPSNG00000022323) #25	ATP6AP1 (ENSPSNG00000022314) #26	TAFAZZIN (ENSPSNG00000022306) #27	DNASE1L1 (ENSPSNG00000022297) #28	ENSPSNG00000022280 #29	ENSPSNG00000022266 #30	FLNA (ENSPSNG00000022089) #31	TKTL1 (ENSPSNG00000021994) #32	ENSPSNG00000021965	ENSPSNG00000021951	ENSPSNG00000021942	ENSPSNG00000021927	TEX28 (ENSPSNG00000021914) #33
Vaquita	MODERN SPECIES	34	ENSPSNG00000022266 #30	ENSPSNG00000022280 #29	DNASE1L1 (ENSPSNG00000022297) #28	TAFAZZIN (ENSPSNG00000022306) #27	ATP6AP1 (ENSPSNG00000022314) #26	GDI1 (ENSPSNG00000022323) #25	ENSPSNG00000022331 #24	PLXNA3 (ENSPSNG00000022341) #23	ENSPSNG00000022354 #22	SLC10A3 (ENSPSNG00000022364) #20	FAM3A (ENSPSNG00000022374) #19	G6PD (ENSPSNG00000022382) #18	IKBKG (ENSPSNG00000022395) #17	ENSPSNG00000022407	ENSPSNG00000022414	ENSPSNG00000022416 #22	GAB3 (ENSPSNG00000022421)	DKC1 (ENSPSNG00000022426)	MPP1 (ENSPSNG00000022439)	SMIM9 (ENSPSNG00000022452)	F8 (ENSPSNG00000022465)	ENSPSNG00000022473	ENSPSNG00000022476	ENSPSNG00000022480	MTCP1 (ENSPSNG00000022484)	CMC4 (ENSPSNG00000013473)	BRCC3 (ENSPSNG00000013597)	ENSPSNG00000013729	VBP1 (ENSPSNG00000013871)	RAB39B (ENSPSNG00000014023)	ENSPSNG00000014068
Camelidae	ANCESTRAL SPECIES																	ENSGT00410000025802.g.a #22
Alpaca	MODERN SPECIES	4089																ENSVPAG00000006669 #22
Arabian camel	MODERN SPECIES	204	TMEM187 (ENSCDRG00005011270) #37	IRAK1 (ENSCDRG00005011306) #36	ENSCDRG00005011350	MECP2 (ENSCDRG00005011374) #35	ENSCDRG00005011483 #34	TEX28 (ENSCDRG00005011542) #33	TKTL1 (ENSCDRG00005011584) #32	FLNA (ENSCDRG00005011684) #31	ENSCDRG00005011914 #30	ENSCDRG00005012077 #29	DNASE1L1 (ENSCDRG00005012179) #28	TAZ (ENSCDRG00005012375) #27	ATP6AP1 (ENSCDRG00005012618) #26	GDI1 (ENSCDRG00005012702) #25	FAM50A (ENSCDRG00005012822) #24	LAGE3 (ENSCDRG00005015984) #22	SLC10A3 (ENSCDRG00005016014) #20	FAM3A (ENSCDRG00005016065) #19	G6PD (ENSCDRG00005016281) #18	IKBKG (ENSCDRG00005016363) #17	ENSCDRG00005016489	ENSCDRG00005016521 ##22	ENSCDRG00005016563 ##22	ENSCDRG00005016586 ##22	GAB3 (ENSCDRG00005016636)	ENSCDRG00005017097 ##22	DKC1 (ENSCDRG00005017117)	MPP1 (ENSCDRG00005017184)	SMIM9 (ENSCDRG00005017392)	F8 (ENSCDRG00005017422)	ENSCDRG00005017538
Suina	DUPLICATION
Suina	ANCESTRAL SPECIES		ENSGT00940000159275	ENSGT00940000154664	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT00390000014792	ENSGT00900000143461.a	ENSGT00390000015789.d.b.b	ENSGT00390000015789.c.a.b	ENSGT00940000163247	ENSGT00940000160681.C	ENSGT00940000154602.b	ENSGT00940000154602.a	ENSGT00410000025802.g.a.e #22	ENSGT00940000155258.t	ENSGT00940000154403.a.a	ENSGT00940000154403.a.b	ENSGT00940000161311	ENSGT00940000161787	ENSGT00940000161991	ENSGT00940000162088	ENSGT00940000153980.p	ENSGT00940000163841	ENSGT00940000153980.o	ENSGT00950000183407	ENSGT00940000163658	ENSGT00940000159486.`b.a.a.a	ENSGT00940000160443.b	ENSGT00940000160443.a
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	941	ACLY (ENSCWAG00000013042)	KLHL11 (ENSCWAG00000012990)	KLHL10 (ENSCWAG00000012934)	NT5C3B (ENSCWAG00000012755)	FKBP10 (ENSCWAG00000012699)	P3H4 (ENSCWAG00000012602)	JUP (ENSCWAG00000012556)	HAP1 (ENSCWAG00000012350)	GAST (ENSCWAG00000012317)	ENSCWAG00000012296	ENSCWAG00000012269	ENSCWAG00000012256	ENSCWAG00000012198	KRT17 (ENSCWAG00000012112)	KRT16 (ENSCWAG00000012005)	ENSCWAG00000011954 #22	KRT14 (ENSCWAG00000011785)	ENSCWAG00000011736 #22	KRT19 (ENSCWAG00000018237)	KRT15 (ENSCWAG00000018128)	ENSCWAG00000018009	KRT36 (ENSCWAG00000017896)	KRT35 (ENSCWAG00000017776)	KRT32 (ENSCWAG00000017718)	ENSCWAG00000017665	ENSCWAG00000017610	ENSCWAG00000017530	ENSCWAG00000017481	ENSCWAG00000017369	ENSCWAG00000017284	ENSCWAG00000017197
Chacoan peccary	MODERN SPECIES	941	KLHL10 (ENSCWAG00000012934)	NT5C3B (ENSCWAG00000012755)	FKBP10 (ENSCWAG00000012699)	P3H4 (ENSCWAG00000012602)	JUP (ENSCWAG00000012556)	HAP1 (ENSCWAG00000012350)	GAST (ENSCWAG00000012317)	ENSCWAG00000012296	ENSCWAG00000012269	ENSCWAG00000012256	ENSCWAG00000012198	KRT17 (ENSCWAG00000012112)	KRT16 (ENSCWAG00000012005)	ENSCWAG00000011954 #22	KRT14 (ENSCWAG00000011785)	ENSCWAG00000011736 #22	KRT19 (ENSCWAG00000018237)	KRT15 (ENSCWAG00000018128)	ENSCWAG00000018009	KRT36 (ENSCWAG00000017896)	KRT35 (ENSCWAG00000017776)	KRT32 (ENSCWAG00000017718)	ENSCWAG00000017665	ENSCWAG00000017610	ENSCWAG00000017530	ENSCWAG00000017481	ENSCWAG00000017369	ENSCWAG00000017284	ENSCWAG00000017197	ENSCWAG00000017174	ENSCWAG00000017141
Pig	MODERN SPECIES	3	ACLY (ENSSSCG00000017421)	KLHL11 (ENSSSCG00000032404)	KLHL10 (ENSSSCG00000033629)	NT5C3B (ENSSSCG00000034779)	FKBP10 (ENSSSCG00000017422)	P3H4 (ENSSSCG00000017429)	JUP (ENSSSCG00000017428)	HAP1 (ENSSSCG00000017427)	GAST (ENSSSCG00000021910)	ENSSSCG00000034799	EIF1 (ENSSSCG00000017430)	ENSSSCG00000017433	KRT17 (ENSSSCG00000056910)	ENSSSCG00000055849	ENSSSCG00000017448	ENSSSCG00000017446 #22	KRT19 (ENSSSCG00000058816)	KRT15 (ENSSSCG00000017444)	ENSSSCG00000017445	KRT36 (ENSSSCG00000017437)	KRT35 (ENSSSCG00000017438)	KRT32 (ENSSSCG00000017439)	KRT31 (ENSSSCG00000021668)	ENSSSCG00000017441	ENSSSCG00000021755	ENSSSCG00000030350	KRTAP17-1 (ENSSSCG00000041928)	ENSSSCG00000052790	KRTAP29-1 (ENSSSCG00000047939)	ENSSSCG00000046804	ENSSSCG00000039008
Suina	ANCESTRAL SPECIES	7	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.f #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Chacoan peccary	MODERN SPECIES	44	ENSCWAG00000000488	ENSCWAG00000000473	SMIM9 (ENSCWAG00000000458)	MPP1 (ENSCWAG00000000412)	DKC1 (ENSCWAG00000000314)	GAB3 (ENSCWAG00000000272)	ENSCWAG00000000236 ##22	ENSCWAG00000000223	ENSCWAG00000000203	IKBKG (ENSCWAG00000000145) #17	G6PD (ENSCWAG00000000077) #18	FAM3A (ENSCWAG00000000031) #19	SLC10A3 (ENSCWAG00000000012) #20	UBL4A (ENSCWAG00000000008) #21	ENSCWAG00000021354	ENSCWAG00000021347 #22	PLXNA3 (ENSCWAG00000021299) #23	FAM50A (ENSCWAG00000021283) #24	GDI1 (ENSCWAG00000021263) #25	ATP6AP1 (ENSCWAG00000021247) #26	TAFAZZIN (ENSCWAG00000021221) #27	DNASE1L1 (ENSCWAG00000021201) #28	ENSCWAG00000021182 #29
Pig	MODERN SPECIES	300	CMC4 (ENSSSCG00000062015)	FUNDC2 (ENSSSCG00000012817)	ENSSSCG00000054901	ENSSSCG00000057758	SMIM9 (ENSSSCG00000055917)	F8 (ENSSSCG00000012822)	DKC1 (ENSSSCG00000012823)	GAB3 (ENSSSCG00000012824)	ENSSSCG00000049540 ##22	ENSSSCG00000012827	IKBKG (ENSSSCG00000012825) #17	G6PD (ENSSSCG00000025108) #18	FAM3A (ENSSSCG00000028934) #19	SLC10A3 (ENSSSCG00000025766) #20	ENSSSCG00000057536 #21	ENSSSCG00000032959 #22	PLXNA3 (ENSSSCG00000023483) #23	FAM50A (ENSSSCG00000025303) #24	GDI1 (ENSSSCG00000030421) #25	ATP6AP1 (ENSSSCG00000037310) #26	TAFAZZIN (ENSSSCG00000039655) #27	DNASE1L1 (ENSSSCG00000037032) #28	RPL10 (ENSSSCG00000035997) #29	FLNA (ENSSSCG00000033299) #31	EMD (ENSSSCG00000037777) #30	TKTL1 (ENSSSCG00000029443) #32	TEX28 (ENSSSCG00000029513) #33	ENSSSCG00000029523 #34	MECP2 (ENSSSCG00000034742) #35	ENSSSCG00000059337	IRAK1 (ENSSSCG00000012795) #36
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Carnivora	ANCESTRAL SPECIES	11	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Felidae	ANCESTRAL SPECIES	29	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744.m	ENSGT00510000047092	ENSGT00940000159803	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Panthera	ANCESTRAL SPECIES	65											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
Panthera_a	ANCESTRAL SPECIES	76											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
lion	MODERN SPECIES	113												IKBKG (ENSPLOG00000008081) #17	G6PD (ENSPLOG00000008022) #18	FAM3A (ENSPLOG00000007925) #19	SLC10A3 (ENSPLOG00000007885) #20	LAGE3 (ENSPLOG00000007855) #22	PLXNA3 (ENSPLOG00000007506) #23	FAM50A (ENSPLOG00000007410) #24	GDI1 (ENSPLOG00000007386) #25	ATP6AP1 (ENSPLOG00000007351) #26	ENSPLOG00000007302 #27	DNASE1L1 (ENSPLOG00000007262) #28	ENSPLOG00000007204 ##29
leopard	MODERN SPECIES	374																ENSPPRG00000009319 #22
Cat	MODERN SPECIES	252	MTCP1 (ENSFCAG00000029629)	CMC4 (ENSFCAG00000023645)	FUNDC2 (ENSFCAG00000031335)	ENSFCAG00000045185	F8 (ENSFCAG00000048336)	SMIM9 (ENSFCAG00000040693)	MPP1 (ENSFCAG00000006578)	DKC1 (ENSFCAG00000006577)	GAB3 (ENSFCAG00000006576)	ENSFCAG00000048808	IKBKG (ENSFCAG00000029840) #17	G6PD (ENSFCAG00000043880) #18	FAM3A (ENSFCAG00000035237) #19	SLC10A3 (ENSFCAG00000022989) #20	UBL4A (ENSFCAG00000025607) #21	LAGE3 (ENSFCAG00000038204) #22	PLXNA3 (ENSFCAG00000011400) #23	FAM50A (ENSFCAG00000011399) #24	GDI1 (ENSFCAG00000011398) #25	ATP6AP1 (ENSFCAG00000011397) #26	TAFAZZIN (ENSFCAG00000023652) #27	DNASE1L1 (ENSFCAG00000011396) #28	ENSFCAG00000011395 ##29	EMD (ENSFCAG00000011394) #30	FLNA (ENSFCAG00000011393) #31	TKTL1 (ENSFCAG00000011392) #32	TEX28 (ENSFCAG00000044525) #33	OPN1LW (ENSFCAG00000011390) #34	MECP2 (ENSFCAG00000011389) #35	IRAK1 (ENSFCAG00000010847) #36	TMEM187 (ENSFCAG00000011388) #37
Caniformia	ANCESTRAL SPECIES	22	ENSGT00940000160294	ENSGT00390000016992	ENSGT00940000163020	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Canidae	ANCESTRAL SPECIES	50	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000158744	ENSGT00510000047092.a	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00940000160294	ENSGT00390000016992.m	ENSGT00940000163020	ENSGT00940000158744	ENSGT00510000047092.a	ENSGT00940000159803	ENSGT00410000025802.g.b.k ##22	ENSGT00410000025802.h ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.h #22	ENSGT00410000025802.g.a.g #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Dog	MODERN SPECIES	144	ENSCAFG00845030278	ENSCAFG00845030269	F8 (ENSCAFG00845030098)	MPP1 (ENSCAFG00845029936)	DKC1 (ENSCAFG00845029852)	ENSCAFG00845029817 ##22	LAGE3 (ENSCAFG00845029708) #22	ENSCAFG00845029697 ##22	ENSCAFG00845029686 ##22	cOR7R1 (ENSCAFG00845029673)	IKBKG (ENSCAFG00845029634) #17	G6PD (ENSCAFG00845029388) #18	ENSCAFG00845029578 #19	SLC10A3 (ENSCAFG00845029316) #20	UBL4A (ENSCAFG00845029287) #21	ENSCAFG00845029273 #22	PLXNA3 (ENSCAFG00845029121) #23	FAM50A (ENSCAFG00845029041) #24	ATP6AP1 (ENSCAFG00845029004) #26	GDI1 (ENSCAFG00845028921) #25	TAZ (ENSCAFG00845028739) #27	DNASE1L1 (ENSCAFG00845028675) #28	RPL10 (ENSCAFG00845028627) ##29	FLNA (ENSCAFG00845027901) #31	EMD (ENSCAFG00845027618) #30	TKTL1 (ENSCAFG00845027442) #32	TEX28 (ENSCAFG00845027400) #33	OPN1LW (ENSCAFG00845027363) #34	MECP2 (ENSCAFG00845027255) #35	IRAK1 (ENSCAFG00845027126) #36	TMEM187 (ENSCAFG00845027090) #37
Dingo	MODERN SPECIES	383	DNASE1L1 (ENSCAFG00020009104) #28	TAFAZZIN (ENSCAFG00020009089) #27	ATP6AP1 (ENSCAFG00020009077) #26	GDI1 (ENSCAFG00020009070) #25	FAM50A (ENSCAFG00020009064) #24	PLXNA3 (ENSCAFG00020009040) #23	ENSCAFG00020009037 #22	UBL4A (ENSCAFG00020009032) #21	SLC10A3 (ENSCAFG00020009027) #20	FAM3A (ENSCAFG00020009021) #19	G6PD (ENSCAFG00020008999) #18	IKBKG (ENSCAFG00020008992) #17	ENSCAFG00020008988	ENSCAFG00020008985	ENSCAFG00020008976 ##22	ENSCAFG00020008968 #22	ENSCAFG00020008959 ##22	ENSCAFG00020008942	ENSCAFG00020008918	MPP1 (ENSCAFG00020008744)	ENSCAFG00020008739	ENSCAFG00020008736	F8 (ENSCAFG00020008704)	FUNDC2 (ENSCAFG00020008699)	MTCP1 (ENSCAFG00020008697)	CMC4 (ENSCAFG00020008696)	ENSCAFG00020008684	VBP1 (ENSCAFG00020008675)	RAB39B (ENSCAFG00020008673)	CLIC2 (ENSCAFG00020008670)	ENSCAFG00020008667
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000016992.m	ENSGT00940000163020	ENSGT00940000158744	ENSGT00510000047092.a	ENSGT00940000159803	ENSGT00410000025802.g.b.k ##22	ENSGT00410000025802.h ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.h #22	ENSGT00410000025802.g.a.g #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36
Dog	MODERN SPECIES	144	DNASE1L1 (ENSCAFG00845028675) #28	TAZ (ENSCAFG00845028739) #27	GDI1 (ENSCAFG00845028921) #25	ATP6AP1 (ENSCAFG00845029004) #26	FAM50A (ENSCAFG00845029041) #24	PLXNA3 (ENSCAFG00845029121) #23	ENSCAFG00845029273 #22	UBL4A (ENSCAFG00845029287) #21	SLC10A3 (ENSCAFG00845029316) #20	ENSCAFG00845029578 #19	G6PD (ENSCAFG00845029388) #18	IKBKG (ENSCAFG00845029634) #17	cOR7R1 (ENSCAFG00845029673)	ENSCAFG00845029686 ##22	ENSCAFG00845029697 ##22	LAGE3 (ENSCAFG00845029708) #22	ENSCAFG00845029817 ##22	DKC1 (ENSCAFG00845029852)	MPP1 (ENSCAFG00845029936)	F8 (ENSCAFG00845030098)	ENSCAFG00845030269	ENSCAFG00845030278	FUNDC2 (ENSCAFG00845030300)	CMC4 (ENSCAFG00845030338)	MTCP1 (ENSCAFG00845030350)	VBP1 (ENSCAFG00845017867)	RAB39B (ENSCAFG00845017965)	CLIC2 (ENSCAFG00845017998)	ENSCAFG00845018126	SPRY3 (ENSCAFG00845018191)	VAMP7 (ENSCAFG00845018278)
Dingo	MODERN SPECIES	383	ENSCAFG00020008736	ENSCAFG00020008739	MPP1 (ENSCAFG00020008744)	ENSCAFG00020008918	ENSCAFG00020008942	ENSCAFG00020008959 ##22	ENSCAFG00020008968 #22	ENSCAFG00020008976 ##22	ENSCAFG00020008985	ENSCAFG00020008988	IKBKG (ENSCAFG00020008992) #17	G6PD (ENSCAFG00020008999) #18	FAM3A (ENSCAFG00020009021) #19	SLC10A3 (ENSCAFG00020009027) #20	UBL4A (ENSCAFG00020009032) #21	ENSCAFG00020009037 #22	PLXNA3 (ENSCAFG00020009040) #23	FAM50A (ENSCAFG00020009064) #24	GDI1 (ENSCAFG00020009070) #25	ATP6AP1 (ENSCAFG00020009077) #26	TAFAZZIN (ENSCAFG00020009089) #27	DNASE1L1 (ENSCAFG00020009104) #28	ENSCAFG00020009114 ##29	FLNA (ENSCAFG00020009434) #31	EMD (ENSCAFG00020022046) #30	TKTL1 (ENSCAFG00020022053) #32	ENSCAFG00020022055	TEX28 (ENSCAFG00020022059) #33	ENSCAFG00020022061 #34	MECP2 (ENSCAFG00020022079) #35	IRAK1 (ENSCAFG00020022089) #36
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36
Chiroptera	ANCESTRAL SPECIES	48	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.a ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.a ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010002379	SMIM9 (ENSRFEG00010002415)	MPP1 (ENSRFEG00010002502)	DKC1 (ENSRFEG00010002621)	GAB3 (ENSRFEG00010002752)	ENSRFEG00010002860 ##22	ENSRFEG00010002889	ENSRFEG00010002921	ENSRFEG00010002963 ##22	ENSRFEG00010002995 ##22	IKBKG (ENSRFEG00010003030) #17	G6PD (ENSRFEG00010003111) #18	FAM3A (ENSRFEG00010003196) #19	SLC10A3 (ENSRFEG00010003285) #20	UBL4A (ENSRFEG00010003315) #21	LAGE3 (ENSRFEG00010003340) #22	PLXNA3 (ENSRFEG00010003374) #23	FAM50A (ENSRFEG00010003417) #24	GDI1 (ENSRFEG00010003480) #25	ATP6AP1 (ENSRFEG00010003617) #26	TAZ (ENSRFEG00010003720) #27	BT_m006_jsm59FD5r (ENSRFEG00010003791) #28	RPL10 (ENSRFEG00010003909) ##29	EMD (ENSRFEG00010004008) #30	FLNA (ENSRFEG00010004101) #31	TKTL1 (ENSRFEG00010004159) #32	TEX28 (ENSRFEG00010004212) #33	ENSRFEG00010004230 #34	MECP2 (ENSRFEG00010004285) #35	IRAK1 (ENSRFEG00010004369) #36	TMEM187 (ENSRFEG00010004460) #37
Microbat	MODERN SPECIES	977										ENSMLUG00000025335	IKBKG (ENSMLUG00000027075) #17	G6PD (ENSMLUG00000008210) #18	FAM3A (ENSMLUG00000005226) #19	SLC10A3 (ENSMLUG00000008199) #20	UBL4A (ENSMLUG00000027145) #21	ENSMLUG00000030030 #22	PLXNA3 (ENSMLUG00000010006) #23	GDI1 (ENSMLUG00000003501) #25	ENSMLUG00000022234 #24	ATP6AP1 (ENSMLUG00000003493) #26	TAFAZZIN (ENSMLUG00000024037) #27	DNASE1L1 (ENSMLUG00000014342) #28	ENSMLUG00000014337 #29	FLNA (ENSMLUG00000014316) #31	EMD (ENSMLUG00000005200) #30	TKTL1 (ENSMLUG00000014306) #32	TEX28 (ENSMLUG00000014304) #33	ENSMLUG00000014299 #34	ENSMLUG00000024727	MECP2 (ENSMLUG00000014297) #35	IRAK1 (ENSMLUG00000014288) #36
Megabat	MODERN SPECIES	498												IKBKG (ENSPVAG00000007488) #17	G6PD (ENSPVAG00000007487) #18	FAM3A (ENSPVAG00000007486) #19	ENSPVAG00000007485	LAGE3 (ENSPVAG00000007484) #22	PLXNA3 (ENSPVAG00000007481) #23
Equus	ANCESTRAL SPECIES	52	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b.m ##22	ENSGT00410000025802.g.b.n ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Horse	MODERN SPECIES	480	ENSECAG00000054244	ENSECAG00000033114	F8 (ENSECAG00000015044)	MPP1 (ENSECAG00000009595)	DKC1 (ENSECAG00000023524)	GAB3 (ENSECAG00000023348)	ENSECAG00000031652 ##22	ENSECAG00000056189	ENSECAG00000029643 ##22	ENSECAG00000033189	IKBKG (ENSECAG00000020595) #17	G6PD (ENSECAG00000014994) #18	FAM3A (ENSECAG00000013840) #19	SLC10A3 (ENSECAG00000013796) #20	UBL4A (ENSECAG00000013506) #21	LAGE3 (ENSECAG00000038130) #22	PLXNA3 (ENSECAG00000025088) #23	FAM50A (ENSECAG00000023594) #24	GDI1 (ENSECAG00000017687) #25	ATP6AP1 (ENSECAG00000014216) #26	TAFAZZIN (ENSECAG00000010872) #27	DNASE1L1 (ENSECAG00000003758) #28	RPL10 (ENSECAG00000017154) #29	FLNA (ENSECAG00000009550) #31	EMD (ENSECAG00000013908) #30	TKTL1 (ENSECAG00000021992) #32	TEX28 (ENSECAG00000021904) #33	OPN1LW (ENSECAG00000018684) #34	MECP2 (ENSECAG00000018208) #35	IRAK1 (ENSECAG00000009585) #36	TMEM187 (ENSECAG00000001086) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00410000025802.g.a #22
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT01050000244815.B.a.a	ENSGT01030000238159	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Glires	ANCESTRAL SPECIES	10	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.B.a.a ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.B.a.a ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Hystricomorpha_b	ANCESTRAL SPECIES	84											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.B.a.a ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383	ENSGT00390000013740
Long-tailed chinchilla	MODERN SPECIES	287									ENSCLAG00000017603	ENSCLAG00000017457	IKBKG (ENSCLAG00000003721) #17	G6PD (ENSCLAG00000003284) #18	FAM3A (ENSCLAG00000002528) #19	SLC10A3 (ENSCLAG00000002307) #20	UBL4A (ENSCLAG00000002161) #21	LAGE3 (ENSCLAG00000002127) #22	PLXNA3 (ENSCLAG00000001910) #23	ENSCLAG00000002733 ##24	GDI1 (ENSCLAG00000002425) #25	ATP6AP1 (ENSCLAG00000002132) #26	TAFAZZIN (ENSCLAG00000010970) #27	DNASE1L1 (ENSCLAG00000003494) #28	ENSCLAG00000003108 ##29	FLNA (ENSCLAG00000003106) #31	EMD (ENSCLAG00000002874) #30	TKTL1 (ENSCLAG00000001825) #32	ENSCLAG00000001715 #34	MECP2 (ENSCLAG00000001648) #35	IRAK1 (ENSCLAG00000006192) #36	HCFC1 (ENSCLAG00000004175)	RENBP (ENSCLAG00000003810)
Degu	MODERN SPECIES	259												IKBKG (ENSODEG00000005911) #17	ENSODEG00000006077 #18	FAM3A (ENSODEG00000006189) #19	UBL4A (ENSODEG00000006287) #21	ENSODEG00000006315 #22	PLXNA3 (ENSODEG00000006368) #23	ENSODEG00000006510 ##24	GDI1 (ENSODEG00000006550) #25	ATP6AP1 (ENSODEG00000003643) #26	TAFAZZIN (ENSODEG00000003758) #27	DNASE1L1 (ENSODEG00000003830) #28	ENSODEG00000003868 ##29	EMD (ENSODEG00000003890) #30	FLNA (ENSODEG00000004055) #31	TKTL1 (ENSODEG00000004431) #32	ENSODEG00000004454	ENSODEG00000004473 #34	ENSODEG00000004516	MECP2 (ENSODEG00000004523) #35	IRAK1 (ENSODEG00000004583) #36
Guinea pig	MODERN SPECIES	148	VBP1 (ENSCPOG00000013652)	ENSCPOG00000001882	CMC4 (ENSCPOG00000033896)	MTCP1 (ENSCPOG00000034922)	FUNDC2 (ENSCPOG00000015635)	F8 (ENSCPOG00000007773)	MPP1 (ENSCPOG00000008826)	DKC1 (ENSCPOG00000008825)	GAB3 (ENSCPOG00000002987)	ENSCPOG00000026136	IKBKG (ENSCPOG00000021550) #17	G6PD (ENSCPOG00000021395) #18	FAM3A (ENSCPOG00000019367) #19	SLC10A3 (ENSCPOG00000007289) #20	UBL4A (ENSCPOG00000040690) #21	ENSCPOG00000034445 #22	PLXNA3 (ENSCPOG00000011493) #23	ENSCPOG00000005974 ##24	GDI1 (ENSCPOG00000032738) #25	ATP6AP1 (ENSCPOG00000005972) #26	TAFAZZIN (ENSCPOG00000020454) #27	DNASE1L1 (ENSCPOG00000005648) #28	ENSCPOG00000002355 ##29	EMD (ENSCPOG00000002642) #30	FLNA (ENSCPOG00000002672) #31	TKTL1 (ENSCPOG00000011767) #32	ENSCPOG00000021789 #33	ENSCPOG00000011198 #34	MECP2 (ENSCPOG00000012579) #35	IRAK1 (ENSCPOG00000039151) #36	ENSCPOG00000024784
Naked mole-rat female	MODERN SPECIES	31												ENSHGLG00000032904 #17	G6PD (ENSHGLG00000001124) #18	FAM3A (ENSHGLG00000005912) #19	ENSHGLG00000003702 #21	LAGE3 (ENSHGLG00000039993) #22	PLXNA3 (ENSHGLG00000002186) #23	ENSHGLG00000039319 ##24	GDI1 (ENSHGLG00000003275) #25	ATP6AP1 (ENSHGLG00000002607) #26	ENSHGLG00000009984 #27	DNASE1L1 (ENSHGLG00000013868) #28	RPL10 (ENSHGLG00000002349) #29	TKTL1 (ENSHGLG00000042978) #32	ENSHGLG00000043472 #33	MECP2 (ENSHGLG00000000899) #35	IRAK1 (ENSHGLG00000002116) #36	HCFC1 (ENSHGLG00000001143)	RENBP (ENSHGLG00000009835)	NAA10 (ENSHGLG00000002773)	ARHGAP4 (ENSHGLG00000000857)
Sciuridae	ANCESTRAL SPECIES	27										ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005016435	SMIM9 (ENSSVLG00005016452)	MPP1 (ENSSVLG00005016498)	DKC1 (ENSSVLG00005016642)	GAB3 (ENSSVLG00005016708)	ENSSVLG00005016985	ENSSVLG00005017050 ##22	ENSSVLG00005017122	ENSSVLG00005017166	ENSSVLG00005017218	IKBKG (ENSSVLG00005017293) #17	G6PD (ENSSVLG00005017520) #18	FAM3A (ENSSVLG00005017584) #19	SLC10A3 (ENSSVLG00005017774) #20	UBL4A (ENSSVLG00005017819) #21	LAGE3 (ENSSVLG00005017858) #22	PLXNA3 (ENSSVLG00005017881) #23	FAM50A (ENSSVLG00005017921) #24	GDI1 (ENSSVLG00005017962) #25	ATP6AP1 (ENSSVLG00005018016) #26	TAFAZZIN (ENSSVLG00005018196) #27	DNASE1L1 (ENSSVLG00005018343) #28	ENSSVLG00005018375 ##29	FLNA (ENSSVLG00005018546) #31	EMD (ENSSVLG00005019520) #30	TKTL1 (ENSSVLG00005017318) #32	TEX28 (ENSSVLG00005017596) #33	ENSSVLG00005017738	ENSSVLG00005017793 #34	MECP2 (ENSSVLG00005017899) #35	ENSSVLG00005018093 #36
Marmotini	ANCESTRAL SPECIES																	ENSGT00410000025802.g.a #22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00410000025802.g.a #22
Arctic ground squirrel	MODERN SPECIES	823								ENSUPAG00010010746 ##22	ENSUPAG00010010780 ##22	ENSUPAG00010010787	ENSUPAG00010010804	ENSUPAG00010010808	IKBKG (ENSUPAG00010010819) #17	FAM3A (ENSUPAG00010010917) #19	SLC10A3 (ENSUPAG00010010974) #20	ENSUPAG00010010991 #22	ENSUPAG00010010993	PLXNA3 (ENSUPAG00010011001) #23	ENSUPAG00010011078 #24	GDI1 (ENSUPAG00010011085) #25	ATP6AP1 (ENSUPAG00010011086) #26	TAFAZZIN (ENSUPAG00010000055) #27	DNASE1L1 (ENSUPAG00010000232) #28	ENSUPAG00010000252 #29	EMD (ENSUPAG00010000276) #30	FLNA (ENSUPAG00010000336) #31
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Kangaroo rat	MODERN SPECIES	526	ENSDORG00000029487	Mtcp1 (ENSDORG00000013159)	Fundc2 (ENSDORG00000013156)	ENSDORG00000028874	F8 (ENSDORG00000013155)	ENSDORG00000024019	Mpp1 (ENSDORG00000013568)	ENSDORG00000013566	Gab3 (ENSDORG00000006809)	ENSDORG00000000625 ##22	Ikbkg (ENSDORG00000028140) #17	ENSDORG00000012731 #18	Fam3a (ENSDORG00000025173) #19	Slc10a3 (ENSDORG00000005197) #20	Ubl4a (ENSDORG00000005196) #21	Lage3 (ENSDORG00000029875) #22	Plxna3 (ENSDORG00000000853) #23	Fam50a (ENSDORG00000008851) #24	Gdi1 (ENSDORG00000008848) #25	Atp6ap1 (ENSDORG00000008847) #26	Tafazzin (ENSDORG00000029677) #27	ENSDORG00000004369 ##29	Flna (ENSDORG00000004370) #31	Emd (ENSDORG00000004375) #30	Tktl1 (ENSDORG00000013785) #32	Tex28 (ENSDORG00000010136) #33	Opn1mw (ENSDORG00000026454) #34	Mecp2 (ENSDORG00000014978) #35	Irak1 (ENSDORG00000013876) #36	Hcfc1 (ENSDORG00000002756)	Renbp (ENSDORG00000002755)
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Muroidea	ANCESTRAL SPECIES	13	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	168	Mtcp1 (ENSMOCG00000002450)	Fundc2 (ENSMOCG00000013641)	F8 (ENSMOCG00000006178)	ENSMOCG00000001114	Smim9 (ENSMOCG00000003619)	Mpp1 (ENSMOCG00000000082)	ENSMOCG00000001169	Gab3 (ENSMOCG00000015626)	Or7r1 (ENSMOCG00000002349)	ENSMOCG00000017711 ##22	Ikbkg (ENSMOCG00000011244) #17	ENSMOCG00000015421 #18	Fam3a (ENSMOCG00000016025) #19	Slc10a3 (ENSMOCG00000008789) #20	Ubl4a (ENSMOCG00000000785) #21	ENSMOCG00000002473 #22	Plxna3 (ENSMOCG00000002375) #23	Fam50a (ENSMOCG00000015890) #24	Gdi1 (ENSMOCG00000006575) #25	Atp6ap1 (ENSMOCG00000001026) #26	Tafazzin (ENSMOCG00000010108) #27	Dnase1l1 (ENSMOCG00000017402) #28	ENSMOCG00000013831 ##29	Emd (ENSMOCG00000003977) #30	Flna (ENSMOCG00000007826) #31	Tex28 (ENSMOCG00000011491) #33	ENSMOCG00000017630 #34
Prairie vole	MODERN SPECIES	13	Septin7 (ENSMOCG00000013002)	Herpud2 (ENSMOCG00000014682)	ENSMOCG00000005080	ENSMOCG00000005481	Tbx20 (ENSMOCG00000016154)	Dpy19l2 (ENSMOCG00000003608)	Dpy19l1 (ENSMOCG00000009241)	Npsr1 (ENSMOCG00000011218)	Bmper (ENSMOCG00000021320)	Bbs9 (ENSMOCG00000014729)	Rp9 (ENSMOCG00000020161)	9530077C05Rik (ENSMOCG00000017716)	Anln (ENSMOCG00000013010)	Zfp810 (ENSMOCG00000002039)	Zfp599 (ENSMOCG00000023026)	ENSMOCG00000022973 #22	ENSMOCG00000018031	Pigyl (ENSMOCG00000017172)	Acp5 (ENSMOCG00000015161)	ENSMOCG00000021126	Cnn1 (ENSMOCG00000010594)	Ecsit (ENSMOCG00000001978)	Zfp653 (ENSMOCG00000016821)	Elavl3 (ENSMOCG00000002046)	Prkcsh (ENSMOCG00000002146)	Odad3 (ENSMOCG00000015552)	Rgl3 (ENSMOCG00000014876)	Epor (ENSMOCG00000013170)	Swsap1 (ENSMOCG00000010976)	Plppr2 (ENSMOCG00000011755)	Ccdc159 (ENSMOCG00000010436)
Northern American deer mouse	MODERN SPECIES	475	F8 (ENSPEMG00000014119)	Smim9 (ENSPEMG00000010945)	Mpp1 (ENSPEMG00000014261)	ENSPEMG00000022395	Dkc1 (ENSPEMG00000013348)	Gab3 (ENSPEMG00000012634)	Or13ae2 (ENSPEMG00000025767)	Or7r1 (ENSPEMG00000009130)	ENSPEMG00000026245 ##22	ENSPEMG00000027888 ##22	ENSPEMG00000029875 ##22	Ikbkg (ENSPEMG00000031110) #17	ENSPEMG00000017532 #18	Fam3a (ENSPEMG00000004757) #19	Ubl4a (ENSPEMG00000027881) #21	Lage3 (ENSPEMG00000011229) #22	Plxna3 (ENSPEMG00000012781) #23	Fam50a (ENSPEMG00000001727) #24	Gdi1 (ENSPEMG00000010952) #25	Atp6ap1 (ENSPEMG00000009724) #26	Tafazzin (ENSPEMG00000007822) #27	Dnase1l1 (ENSPEMG00000013008) #28	ENSPEMG00000015703 ##29	Emd (ENSPEMG00000012081) #30	Flna (ENSPEMG00000009562) #31	Tktl1 (ENSPEMG00000012644) #32	Tex28 (ENSPEMG00000009005) #33	Opn1mw (ENSPEMG00000010994) #34	Mecp2 (ENSPEMG00000015115) #35	ENSPEMG00000025112	Irak1 (ENSPEMG00000001469) #36
Cricetinae	ANCESTRAL SPECIES	46	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b.q.a ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383	ENSGT00550000074803
Chinese hamster chok1gshd	MODERN SPECIES	16	Mtcp1 (ENSCGRG00001021448)	Cmc4 (ENSCGRG00001024106)	Fundc2 (ENSCGRG00001005074)	F8 (ENSCGRG00001018172)	Smim9 (ENSCGRG00001020847)	Mpp1 (ENSCGRG00001000334)	ENSCGRG00001014574	Gab3 (ENSCGRG00001024780)	ENSCGRG00001000852 ##22	ENSCGRG00001018213	Or7r1 (ENSCGRG00001002331)	Ikbkg (ENSCGRG00001023852) #17	G6PDH (ENSCGRG00001009805) #18	Fam3a (ENSCGRG00001017590) #19	Ubl4a (ENSCGRG00001024649) #21	Lage3 (ENSCGRG00001006943) #22	Plxna3 (ENSCGRG00001018950) #23	Fam50a (ENSCGRG00001022147) #24	Gdi1 (ENSCGRG00001020747) #25	Atp6ap1 (ENSCGRG00001015351) #26	TAZ (ENSCGRG00001016189) #27	DNASE1L1 (ENSCGRG00001019882) #28	ENSCGRG00001008387 ##29	Emd (ENSCGRG00001023962) #30	Flna (ENSCGRG00001013154) #31	ENSCGRG00001010950	Tex28 (ENSCGRG00001014288) #33	Opn1mw (ENSCGRG00001024157) #34	Mecp2 (ENSCGRG00001017650) #35	ENSCGRG00001022957	Irak1 (ENSCGRG00001013928) #36
Golden Hamster	MODERN SPECIES	857											Ikbkg (ENSMAUG00000008491) #17	ENSMAUG00000008547 #18	Fam3a (ENSMAUG00000009961) #19	Slc10a3 (ENSMAUG00000005496) #20	Ubl4a (ENSMAUG00000019612) #21	Lage3 (ENSMAUG00000021750) #22	Plxna3 (ENSMAUG00000019645) #23	Fam50a (ENSMAUG00000020359) #24	Gdi1 (ENSMAUG00000001476) #25	Atp6ap1 (ENSMAUG00000014514) #26	Tafazzin (ENSMAUG00000001836) #27	Dnase1l1 (ENSMAUG00000005714) #28	ENSMAUG00000013615 ##29	Emd (ENSMAUG00000016655) #30	Tex28 (ENSMAUG00000011775) #33	Opn1mw (ENSMAUG00000017549) #34	Mecp2 (ENSMAUG00000018195) #35	Irak1 (ENSMAUG00000002430) #36	Hcfc1 (ENSMAUG00000018495)	Naa10 (ENSMAUG00000019021)	Arhgap4 (ENSMAUG00000020011)
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT00390000016992	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Mus	ANCESTRAL SPECIES	9	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b.o.a	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Mouse	MODERN SPECIES	37	Smim9 (ENSMUSG00000073094)	Mpp1 (ENSMUSG00000031402)	Dkc1 (ENSMUSG00000031403)	Gab3 (ENSMUSG00000032750)	Pwwp4d (ENSMUSG00000079531)	Ctag2l2 (ENSMUSG00000079532) ##22	Pwwp4c (ENSMUSG00000079534)	Or13ae2 (ENSMUSG00000051706)	Or7r1 (ENSMUSG00000043715)	Ctag2l1 (ENSMUSG00000079536) ##22	G6pdx (ENSMUSG00000031400) #18	Ikbkg (ENSMUSG00000004221) #17	Fam3a (ENSMUSG00000031399) #19	Slc10a3 (ENSMUSG00000032806) #20	Ubl4a (ENSMUSG00000015290) #21	Lage3 (ENSMUSG00000015289) #22	Plxna3 (ENSMUSG00000031398) #23	Fam50a (ENSMUSG00000001962) #24	Gdi1 (ENSMUSG00000015291) #25	Atp6ap1 (ENSMUSG00000019087) #26	Tafazzin (ENSMUSG00000009995) #27	Dnase1l1 (ENSMUSG00000019088) #28	Rpl10 (ENSMUSG00000008682) #29	Emd (ENSMUSG00000001964) #30	Flna (ENSMUSG00000031328) #31	Tktl1 (ENSMUSG00000031397) #32	Tex28 (ENSMUSG00000062564) #33	Opn1mw (ENSMUSG00000031394) #34	Mecp2 (ENSMUSG00000031393) #35	Irak1 (ENSMUSG00000031392) #36	Hcfc1 (ENSMUSG00000031386)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00940000161383
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3095																ENSMSIG00000007398 #22	Fam98a (ENSMSIG00000007349)	Rasgrp3 (ENSMSIG00000007279)	Ltbp1 (ENSMSIG00000006897)
Steppe mouse	MODERN SPECIES	3059	Triobp (ENSMSIG00000021755)	Nol12 (ENSMSIG00000021746)	ENSMSIG00000021741	Pdxp (ENSMSIG00000021730)	ENSMSIG00000021727	Sh3bp1 (ENSMSIG00000021616)	Gga1 (ENSMSIG00000021582)	Lgals2 (ENSMSIG00000021568)	Cdc42ep1 (ENSMSIG00000021555)	ENSMSIG00000021552	Card10 (ENSMSIG00000021533)	Mfng (ENSMSIG00000021523)	Elfn2 (ENSMSIG00000021511)	Cyth4 (ENSMSIG00000021494)	Rac2 (ENSMSIG00000021480)	ENSMSIG00000021468 #22	Sstr3 (ENSMSIG00000021464)	C1qtnf6 (ENSMSIG00000021425)	Il2rb (ENSMSIG00000021395)	Tmprss6 (ENSMSIG00000021190)	ENSMSIG00000020887	Mpst (ENSMSIG00000020875)	Tst (ENSMSIG00000020870)	Tex33 (ENSMSIG00000020847)	Csf2rb (ENSMSIG00000020767)	Ncf4 (ENSMSIG00000020744)	Pvalb (ENSMSIG00000020723)	Ift27 (ENSMSIG00000020695)	Cacng2 (ENSMSIG00000020664)	Eif3d (ENSMSIG00000020642)	Foxred2 (ENSMSIG00000020597)
spretus	MODERN SPECIES	19	Fundc2 (MGP_SPRETEiJ_G0034355)	F8 (MGP_SPRETEiJ_G0034354)	Smim9 (MGP_SPRETEiJ_G0034353)	Mpp1 (MGP_SPRETEiJ_G0034352)	Dkc1 (MGP_SPRETEiJ_G0034351)	MGP_SPRETEiJ_G0034348 ##22	MGP_SPRETEiJ_G0034347	Or13ae2 (MGP_SPRETEiJ_G0034346)	Or7r1 (MGP_SPRETEiJ_G0034345)	MGP_SPRETEiJ_G0034344 ##22	G6pdx (MGP_SPRETEiJ_G0034343) #18	Ikbkg (MGP_SPRETEiJ_G0034342) #17	Fam3a (MGP_SPRETEiJ_G0034341) #19	Slc10a3 (MGP_SPRETEiJ_G0034340) #20	Ubl4a (MGP_SPRETEiJ_G0034339) #21	Lage3 (MGP_SPRETEiJ_G0034338) #22	Plxna3 (MGP_SPRETEiJ_G0034337) #23	Fam50a (MGP_SPRETEiJ_G0034336) #24	Gdi1 (MGP_SPRETEiJ_G0034335) #25	Atp6ap1 (MGP_SPRETEiJ_G0034334) #26	Tafazzin (MGP_SPRETEiJ_G0034333) #27	Dnase1l1 (MGP_SPRETEiJ_G0034332) #28	MGP_SPRETEiJ_G0034331 ##29	Emd (MGP_SPRETEiJ_G0034330) #30	Flna (MGP_SPRETEiJ_G0034329) #31	Tktl1 (MGP_SPRETEiJ_G0034328) #32	Tex28 (MGP_SPRETEiJ_G0034327) #33	Opn1mw (MGP_SPRETEiJ_G0034326) #34	Mecp2 (MGP_SPRETEiJ_G0034325) #35	Irak1 (MGP_SPRETEiJ_G0034324) #36	Hcfc1 (MGP_SPRETEiJ_G0034323)
Ryukyu mouse	MODERN SPECIES	19	MGP_CAROLIEiJ_G0033198	Mtcp1 (MGP_CAROLIEiJ_G0033197)	Cmc4 (MGP_CAROLIEiJ_G0033196)	Fundc2 (MGP_CAROLIEiJ_G0033195)	F8 (MGP_CAROLIEiJ_G0033194)	Smim9 (MGP_CAROLIEiJ_G0033193)	Mpp1 (MGP_CAROLIEiJ_G0033192)	Dkc1 (MGP_CAROLIEiJ_G0033191)	Or13ae2 (MGP_CAROLIEiJ_G0033190)	Or7r1 (MGP_CAROLIEiJ_G0033189)	G6pdx (MGP_CAROLIEiJ_G0033188) #18	Ikbkg (MGP_CAROLIEiJ_G0033187) #17	Fam3a (MGP_CAROLIEiJ_G0033186) #19	Slc10a3 (MGP_CAROLIEiJ_G0033185) #20	Ubl4a (MGP_CAROLIEiJ_G0033184) #21	Lage3 (MGP_CAROLIEiJ_G0033183) #22	Plxna3 (MGP_CAROLIEiJ_G0033182) #23	Fam50a (MGP_CAROLIEiJ_G0033181) #24	Gdi1 (MGP_CAROLIEiJ_G0033180) #25	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #26	Tafazzin (MGP_CAROLIEiJ_G0033178) #27	Dnase1l1 (MGP_CAROLIEiJ_G0033177) #28	MGP_CAROLIEiJ_G0033176 #29	Emd (MGP_CAROLIEiJ_G0033175) #30	Flna (MGP_CAROLIEiJ_G0033174) #31	Tktl1 (MGP_CAROLIEiJ_G0033173) #32	Tex28 (MGP_CAROLIEiJ_G0033172) #33	Opn1mw (MGP_CAROLIEiJ_G0033171) #34	Mecp2 (MGP_CAROLIEiJ_G0033170) #35	Irak1 (MGP_CAROLIEiJ_G0033169) #36	Hcfc1 (MGP_CAROLIEiJ_G0033168)
Shrew mouse	MODERN SPECIES	23	Mtcp1 (MGP_PahariEiJ_G0031741)	Cmc4 (MGP_PahariEiJ_G0031740)	Fundc2 (MGP_PahariEiJ_G0031739)	F8 (MGP_PahariEiJ_G0031738)	Smim9 (MGP_PahariEiJ_G0031737)	Mpp1 (MGP_PahariEiJ_G0031736)	Dkc1 (MGP_PahariEiJ_G0031735)	Gab3 (MGP_PahariEiJ_G0031734)	Or13ae2 (MGP_PahariEiJ_G0031733)	Or7r1 (MGP_PahariEiJ_G0031732)	G6pdx (MGP_PahariEiJ_G0031731) #18	Ikbkg (MGP_PahariEiJ_G0031730) #17	Fam3a (MGP_PahariEiJ_G0031729) #19	Slc10a3 (MGP_PahariEiJ_G0031728) #20	Ubl4a (MGP_PahariEiJ_G0031727) #21	Lage3 (MGP_PahariEiJ_G0031726) #22	Plxna3 (MGP_PahariEiJ_G0031725) #23	Fam50a (MGP_PahariEiJ_G0031724) #24	Gdi1 (MGP_PahariEiJ_G0031723) #25	Atp6ap1 (MGP_PahariEiJ_G0031722) #26	Tafazzin (MGP_PahariEiJ_G0031721) #27	Dnase1l1 (MGP_PahariEiJ_G0031720) #28	MGP_PahariEiJ_G0031719 #29	Emd (MGP_PahariEiJ_G0031718) #30	Flna (MGP_PahariEiJ_G0031717) #31	MGP_PahariEiJ_G0031716 #32	Tex28 (MGP_PahariEiJ_G0031715) #33	Opn1mw (MGP_PahariEiJ_G0031714) #34	Mecp2 (MGP_PahariEiJ_G0031713) #35	Irak1 (MGP_PahariEiJ_G0031712) #36	Hcfc1 (MGP_PahariEiJ_G0031711)
Upper Galilee mountains blind mole rat	MODERN SPECIES	660									Or13ae2 (ENSNGAG00000001537)	ENSNGAG00000024034 ##22	Ikbkg (ENSNGAG00000019535) #17	ENSNGAG00000020668 #18	Fam3a (ENSNGAG00000016683) #19	Slc10a3 (ENSNGAG00000007975) #20	Ubl4a (ENSNGAG00000023782) #21	Lage3 (ENSNGAG00000023293) #22	Plxna3 (ENSNGAG00000022548) #23	ENSNGAG00000012608	Fam50a (ENSNGAG00000021495) #24	Gdi1 (ENSNGAG00000023333) #25	Atp6ap1 (ENSNGAG00000021512) #26	Tafazzin (ENSNGAG00000008680) #27	Dnase1l1 (ENSNGAG00000024155) #28	ENSNGAG00000023746 ##29	Emd (ENSNGAG00000018770) #30	Flna (ENSNGAG00000013524) #31	Tex28 (ENSNGAG00000023701) #33	Opn1mw (ENSNGAG00000011604) #34	Mecp2 (ENSNGAG00000009171) #35	Irak1 (ENSNGAG00000011647) #36	Hcfc1 (ENSNGAG00000013083)
Lesser Egyptian jerboa	MODERN SPECIES	224											Ikbkg (ENSJJAG00000023964) #17	ENSJJAG00000023806 #18	Fam3a (ENSJJAG00000023156) #19	Slc10a3 (ENSJJAG00000022929) #20	ENSJJAG00000022788 #21	Lage3 (ENSJJAG00000022478) #22	Plxna3 (ENSJJAG00000020257) #23	Fam50a (ENSJJAG00000010389) #24	Gdi1 (ENSJJAG00000008815) #25	ENSJJAG00000019557 #26	Tafazzin (ENSJJAG00000015233) #27	ENSJJAG00000014235 ##29	Emd (ENSJJAG00000019656) #30	Flna (ENSJJAG00000015450) #31	Tktl1 (ENSJJAG00000010328) #32	Tex28 (ENSJJAG00000019769) #33	Opn1mw (ENSJJAG00000022699) #34	ENSJJAG00000022596	Mecp2 (ENSJJAG00000022463) #35	Irak1 (ENSJJAG00000013849) #36	Hcfc1 (ENSJJAG00000012815)
Lagomorpha	ANCESTRAL SPECIES	103												ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37	ENSGT00940000161383	ENSGT00390000013740
Rabbit	MODERN SPECIES	549												IKBKG (ENSOCUG00000007873) #17	G6PD (ENSOCUG00000007866) #18	FAM3A (ENSOCUG00000015663) #19	SLC10A3 (ENSOCUG00000022433) #20	LAGE3 (ENSOCUG00000028990) #22	PLXNA3 (ENSOCUG00000015623) #23	FAM50A (ENSOCUG00000017644) #24	GDI1 (ENSOCUG00000017639) #25	ENSOCUG00000017631 #26	TAFAZZIN (ENSOCUG00000000885) #27	RA_m006_jsm7BED4f (ENSOCUG00000024511) #31	EMD (ENSOCUG00000000882) #30	FLNA (ENSOCUG00000000880) #31	TKTL1 (ENSOCUG00000000883) #32	TEX28 (ENSOCUG00000021000) #33	OPN1MW (ENSOCUG00000011466) #34	MECP2 (ENSOCUG00000013147) #35	IRAK1 (ENSOCUG00000025860) #36	TMEM187 (ENSOCUG00000001116) #37	HCFC1 (ENSOCUG00000001113)
Pika	MODERN SPECIES	7016																LAGE3 (ENSOPRG00000003778) #22	PLXNA3 (ENSOPRG00000003702) #23
Primates	ANCESTRAL SPECIES	23	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Strepsirrhini	ANCESTRAL SPECIES	45											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Lemuriformes	ANCESTRAL SPECIES	60											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Lemuriformes_a	ANCESTRAL SPECIES	110											ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Greater bamboo lemur	MODERN SPECIES	1160												IKBKG (ENSPSMG00000000861) #17	G6PD (ENSPSMG00000000786) #18	FAM3A (ENSPSMG00000000661) #19	UBL4A (ENSPSMG00000000561) #21	LAGE3 (ENSPSMG00000000544) #22	ENSPSMG00000000535 #23	ENSPSMG00000000524 #23	FAM50A (ENSPSMG00000000520) #24
Coquerels sifaka	MODERN SPECIES	882											IKBKG (ENSPCOG00000026138) #17	G6PD (ENSPCOG00000028512) #18	FAM3A (ENSPCOG00000016869) #19	SLC10A3 (ENSPCOG00000025772) #20	UBL4A (ENSPCOG00000022735) #21	LAGE3 (ENSPCOG00000027993) #22	PLXNA3 (ENSPCOG00000015843) #23	ENSPCOG00000024061 #24	GDI1 (ENSPCOG00000015358) #25	ATP6AP1 (ENSPCOG00000015508) #26	TAFAZZIN (ENSPCOG00000023186) #27	DNASE1L1 (ENSPCOG00000022635) #28	ENSPCOG00000027122 ##29	EMD (ENSPCOG00000015697) #30	FLNA (ENSPCOG00000011059) #31	TKTL1 (ENSPCOG00000023105) #32	ENSPCOG00000015866 #34	MECP2 (ENSPCOG00000024848) #35	IRAK1 (ENSPCOG00000027349) #36	TMEM187 (ENSPCOG00000024026) #37	HCFC1 (ENSPCOG00000028065)
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT00530000063582.a	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000146917	ENSGT00940000160502 #36
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00410000025802.h.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052	ENSGT00910000146917
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000003897.s.b.a.a.b.e.a #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.e.a #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052	ENSGT00910000146917
Hominidae	ANCESTRAL SPECIES	8	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b.f #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00530000063687.b.b.b.f #35	ENSGT00390000003897.s.b.a.a.b.e.a #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b.f #34	ENSGT00530000063687.b.b.b.e #35
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00530000063687.b.b.b.f #35	ENSGT00390000003897.s.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b.f #34	ENSGT00530000063687.b.b.b.e #35
Pan	ANCESTRAL SPECIES	43	ENSGT00390000016992.bb	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00390000011549.e	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28
Bonobo	MODERN SPECIES	369	FUNDC2 (ENSPPAG00000028980)	ENSPPAG00000022594	F8 (ENSPPAG00000033513)	SMIM9 (ENSPPAG00000035097)	ENSPPAG00000031767	MPP1 (ENSPPAG00000040588)	DKC1 (ENSPPAG00000023820)	GAB3 (ENSPPAG00000033506)	ENSPPAG00000030022 ##22	ENSPPAG00000024171	IKBKG (ENSPPAG00000019041) #17	G6PD (ENSPPAG00000030117) #18	ENSPPAG00000028567 #19	SLC10A3 (ENSPPAG00000036137) #20	ENSPPAG00000035975 #21	LAGE3 (ENSPPAG00000028018) #22	PLXNA3 (ENSPPAG00000037363) #23	ENSPPAG00000043116 #24	GDI1 (ENSPPAG00000027756) #25	ATP6AP1 (ENSPPAG00000036293) #26	TAFAZZIN (ENSPPAG00000036682) #27	DNASE1L1 (ENSPPAG00000012889) #28	ENSPPAG00000034160 #29	MECP2 (ENSPPAG00000034020) #35	ENSPPAG00000042175	IRAK1 (ENSPPAG00000040186) #36	TMEM187 (ENSPPAG00000007444) #37	HCFC1 (ENSPPAG00000044057)	RENBP (ENSPPAG00000035978)	ENSPPAG00000037021	ARHGAP4 (ENSPPAG00000039545)
Chimpanzee	MODERN SPECIES	972	DKC1 (ENSPTRG00000022449)	GAB3 (ENSPTRG00000022447)	ENSPTRG00000022446 ##22	ENSPTRG00000045486 #17	ENSPTRG00000052333	ENSPTRG00000043176	ENSPTRG00000040429 ##22	ENSPTRG00000022445 ##22	ENSPTRG00000044790	ENSPTRG00000050406	IKBKG (ENSPTRG00000040677) #17	G6PD (ENSPTRG00000022443) #18	FAM3A (ENSPTRG00000022442) #19	SLC10A3 (ENSPTRG00000051548) #20	UBL4A (ENSPTRG00000022440) #21	LAGE3 (ENSPTRG00000022439) #22	PLXNA3 (ENSPTRG00000022438) #23	FAM50A (ENSPTRG00000022437) #24	GDI1 (ENSPTRG00000028169) #25	ATP6AP1 (ENSPTRG00000022435) #26	TAFAZZIN (ENSPTRG00000022434) #27	DNASE1L1 (ENSPTRG00000042704) #28	RPL10 (ENSPTRG00000043378) #29	TKTL1 (ENSPTRG00000022429) #32	TEX28 (ENSPTRG00000022426) #33	OPN1LW (ENSPTRG00000022427) #34	MECP2 (ENSPTRG00000048003) #35	ENSPTRG00000047302	ENSPTRG00000046201	IRAK1 (ENSPTRG00000022423) #36	ENSPTRG00000022422 #37
Human	MODERN SPECIES	1827	F8A1 (ENSG00000288722)	H2AB1 (ENSG00000274183)	F8 (ENSG00000185010)	SMIM9 (ENSG00000203870)	MPP1 (ENSG00000130830)	DKC1 (ENSG00000130826)	GAB3 (ENSG00000160219)	CTAG2 (ENSG00000126890) ##22	CTAG1B (ENSG00000184033) ##22	CTAG1A (ENSG00000268651) ##22	IKBKG (ENSG00000269335) #17	G6PD (ENSG00000160211) #18	FAM3A (ENSG00000071889) #19	SLC10A3 (ENSG00000126903) #20	UBL4A (ENSG00000102178) #21	LAGE3 (ENSG00000196976) #22	PLXNA3 (ENSG00000130827) #23	FAM50A (ENSG00000071859) #24	GDI1 (ENSG00000203879) #25	ATP6AP1 (ENSG00000071553) #26	TAFAZZIN (ENSG00000102125) #27	DNASE1L1 (ENSG00000013563) #28	RPL10 (ENSG00000147403) ##29	EMD (ENSG00000102119) #30	FLNA (ENSG00000196924) #31	TKTL1 (ENSG00000007350) #32	TEX28 (ENSG00000278057) #33	OPN1MW3 (ENSG00000269433) #34	OPN1MW2 (ENSG00000166160) #34	OPN1MW (ENSG00000268221) #34	OPN1LW (ENSG00000102076) #34
Gorilla	MODERN SPECIES	523	SMIM9 (ENSGGOG00000005354)	ENSGGOG00000025061	MPP1 (ENSGGOG00000001049)	DKC1 (ENSGGOG00000001045)	GAB3 (ENSGGOG00000001042)	ENSGGOG00000025843 #17	ENSGGOG00000043272 ##22	ENSGGOG00000022830 ##22	ENSGGOG00000040976	ENSGGOG00000025927	IKBKG (ENSGGOG00000004896) #17	G6PD (ENSGGOG00000004890) #18	ENSGGOG00000005270 #19	SLC10A3 (ENSGGOG00000013520) #20	ENSGGOG00000013509 #21	LAGE3 (ENSGGOG00000013507) #22	PLXNA3 (ENSGGOG00000013493) #23	ENSGGOG00000013484 #24	GDI1 (ENSGGOG00000013474) #25	ATP6AP1 (ENSGGOG00000013466) #26	TAZ (ENSGGOG00000011947) #27	DNASE1L1 (ENSGGOG00000000132) #28	ENSGGOG00000000131 #29	EMD (ENSGGOG00000009388) #30	FLNA (ENSGGOG00000004199) #31	TKTL1 (ENSGGOG00000004191) #32	TEX28 (ENSGGOG00000004188) #33	ENSGGOG00000004184 #34	MECP2 (ENSGGOG00000042467) #35	ENSGGOG00000041822	ENSGGOG00000040298
Orangutan	MODERN SPECIES	242	ENSPPYG00000038630	ENSPPYG00000035928	F8 (ENSPPYG00000020895)	SMIM9 (ENSPPYG00000020894)	MPP1 (ENSPPYG00000020893)	DKC1 (ENSPPYG00000020892)	GAB3 (ENSPPYG00000020891)	CTAG2 (ENSPPYG00000020890) ##22	ENSPPYG00000020888 ##22	ENSPPYG00000020887	IKBKG (ENSPPYG00000020886) #17	G6PD (ENSPPYG00000020885) #18	FAM3A (ENSPPYG00000020884) #19	SLC10A3 (ENSPPYG00000020883) #20	UBL4A (ENSPPYG00000020882) #21	LAGE3 (ENSPPYG00000033247) #22	FAM50A (ENSPPYG00000020879) #24	GDI1 (ENSPPYG00000020878) #25	ATP6AP1 (ENSPPYG00000020877) #26	TAFAZZIN (ENSPPYG00000020876) #27	DNASE1L1 (ENSPPYG00000020875) #28	RPL10 (ENSPPYG00000020874) ##29	EMD (ENSPPYG00000020873) #30	FLNA (ENSPPYG00000020871) #31	TKTL1 (ENSPPYG00000020870) #32	TEX28 (ENSPPYG00000020869) #33	ENSPPYG00000020867 #34	MECP2 (ENSPPYG00000020866) #35	IRAK1 (ENSPPYG00000020865) #36	TMEM187 (ENSPPYG00000020864) #37	HCFC1 (ENSPPYG00000020863)
Gibbon	MODERN SPECIES	449	CMC4 (ENSNLEG00000027271)	ENSNLEG00000014443	ENSNLEG00000018302	F8 (ENSNLEG00000014427)	SMIM9 (ENSNLEG00000014424)	ENSNLEG00000028336	ENSNLEG00000014423	MPP1 (ENSNLEG00000014358)	DKC1 (ENSNLEG00000014323)	GAB3 (ENSNLEG00000014318)	ENSNLEG00000014311 #17	ENSNLEG00000014300 #18	FAM3A (ENSNLEG00000030950) #19	SLC10A3 (ENSNLEG00000014293) #20	ENSNLEG00000014292 #21	LAGE3 (ENSNLEG00000028687) #22	PLXNA3 (ENSNLEG00000014273) #23	FAM50A (ENSNLEG00000014266) #24	GDI1 (ENSNLEG00000014222) #25	ATP6AP1 (ENSNLEG00000014184) #26	ENSNLEG00000014176 #27	DNASE1L1 (ENSNLEG00000014149) #28	ENSNLEG00000028143 #29	EMD (ENSNLEG00000014117) #30	FLNA (ENSNLEG00000013842) #31	TKTL1 (ENSNLEG00000013813) #32	TEX28 (ENSNLEG00000013808) #33	ENSNLEG00000013787 #34	ENSNLEG00000013783 #35	ENSNLEG00000013767 #36	TMEM187 (ENSNLEG00000013763) #37
Cercopithecidae	ANCESTRAL SPECIES	37	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00910000147580	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
Cercopithecinae	ANCESTRAL SPECIES	25	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00910000147580	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00910000147580	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052	ENSGT00910000146917
Macaca	ANCESTRAL SPECIES	13	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052	ENSGT00910000146917
Pig-tailed macaque	MODERN SPECIES	403												G6PD (ENSMNEG00000031229) #18	FAM3A (ENSMNEG00000034258) #19	SLC10A3 (ENSMNEG00000042913) #20	UBL4A (ENSMNEG00000039513) #21	LAGE3 (ENSMNEG00000044542) #22	PLXNA3 (ENSMNEG00000029520) #23	FAM50A (ENSMNEG00000033378) #24	GDI1 (ENSMNEG00000029142) #25	ATP6AP1 (ENSMNEG00000040534) #26	TAFAZZIN (ENSMNEG00000038446) #27	DNASE1L1 (ENSMNEG00000032874) #28	ENSMNEG00000038094 ##29	FLNA (ENSMNEG00000040468) #31	EMD (ENSMNEG00000042917) #30	TKTL1 (ENSMNEG00000045070) #32	TEX28 (ENSMNEG00000032132) #33
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00390000006885.a	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00530000063808.a #17	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.b.b	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Rhesus	MODERN SPECIES	327	SMIM9 (ENSMMUG00000062044)	ENSMMUG00000060911	MPP1 (ENSMMUG00000005772)	DKC1 (ENSMMUG00000005768)	GAB3 (ENSMMUG00000015190)	ENSMMUG00000045112 ##22	ENSMMUG00000051337	IKBKG (ENSMMUG00000017277) #17	ENSMMUG00000051483	ENSMMUG00000017405 ##22	ENSMMUG00000052573 ##22	G6PD (ENSMMUG00000017409) #18	FAM3A (ENSMMUG00000009012) #19	ENSMMUG00000063935	UBL4A (ENSMMUG00000009015) #20	LAGE3 (ENSMMUG00000040340) #22	PLXNA3 (ENSMMUG00000005507) #23	FAM50A (ENSMMUG00000005505) #24	GDI1 (ENSMMUG00000005502) #25	ATP6AP1 (ENSMMUG00000005501) #26	TAFAZZIN (ENSMMUG00000005498) #27	DNASE1L1 (ENSMMUG00000050873) #28	RPL10 (ENSMMUG00000005494) ##29	FLNA (ENSMMUG00000013668) #31	EMD (ENSMMUG00000013678) #30	TKTL1 (ENSMMUG00000013667) #32	ENSMMUG00000050314 #33	ENSMMUG00000054361 #34	ENSMMUG00000055487 #33	ENSMMUG00000006166 #34	MECP2 (ENSMMUG00000018704) #35
Crab-eating macaque	MODERN SPECIES	175	ENSMFAG00000050091	ENSMFAG00000058523	VBP1 (ENSMFAG00000032032)	ENSMFAG00000056611	BRCC3 (ENSMFAG00000031106)	MTCP1 (ENSMFAG00000052287)	ENSMFAG00000045993	FUNDC2 (ENSMFAG00000038031)	F8 (ENSMFAG00000039948)	ENSMFAG00000060522	IKBKG (ENSMFAG00000032230) #17	G6PD (ENSMFAG00000043207) #18	FAM3A (ENSMFAG00000041814) #19	SLC10A3 (ENSMFAG00000035989) #20	UBL4A (ENSMFAG00000000884) #21	LAGE3 (ENSMFAG00000004038) #22	PLXNA3 (ENSMFAG00000040837) #23	FAM50A (ENSMFAG00000021581) #24	GDI1 (ENSMFAG00000037198) #25	ATP6AP1 (ENSMFAG00000003619) #26	TAFAZZIN (ENSMFAG00000028691) #27	DNASE1L1 (ENSMFAG00000038787) #28	ENSMFAG00000040824 #29	FLNA (ENSMFAG00000035790) #31	EMD (ENSMFAG00000045316) #30	TKTL1 (ENSMFAG00000031072) #32	ENSMFAG00000059786 #33	ENSMFAG00000039596 #33	ENSMFAG00000043960 #34	ENSMFAG00000049901	MECP2 (ENSMFAG00000033178) #35
Cercopithecinae_b	ANCESTRAL SPECIES	51	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #35	ENSGT01030000234549.a.a.a.b #34	ENSGT00940000162843 #33	ENSGT00940000162426 #32	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00910000147580	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.e.a #29
Olive baboon	MODERN SPECIES	792	PDZD4 (ENSPANG00000000291)	L1CAM (ENSPANG00000013145)	AVPR2 (ENSPANG00000004382)	ARHGAP4 (ENSPANG00000010087)	NAA10 (ENSPANG00000014390)	RENBP (ENSPANG00000008961)	HCFC1 (ENSPANG00000024276)	TMEM187 (ENSPANG00000050796) #37	IRAK1 (ENSPANG00000015781) #36	MECP2 (ENSPANG00000011691) #35	OPN1LW (ENSPANG00000011135) #34	TEX28 (ENSPANG00000041590) #33	TKTL1 (ENSPANG00000011938) #32	SLC10A3 (ENSPANG00000014876) #20	UBL4A (ENSPANG00000010838) #21	LAGE3 (ENSPANG00000021408) #22	PLXNA3 (ENSPANG00000022718) #23	GDI1 (ENSPANG00000023322) #25	ATP6AP1 (ENSPANG00000012092) #26	TAFAZZIN (ENSPANG00000023866) #27	DNASE1L1 (ENSPANG00000026075) #28	RPL10 (ENSPANG00000008309) #29	FLNA (ENSPANG00000025614) #31	ENSPANG00000046902	SMIM9 (ENSPANG00000014914)	MPP1 (ENSPANG00000013144)	DKC1 (ENSPANG00000011978)	GAB3 (ENSPANG00000004006)	F8 (ENSPANG00000010602)	FUNDC2 (ENSPANG00000004381)	CMC4 (ENSPANG00000017783)
Cercopithecinae_d	ANCESTRAL SPECIES	195									ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00910000147580	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
Sooty mangabey	MODERN SPECIES	567											ENSCATG00000021841	G6PD (ENSCATG00000009953) #18	FAM3A (ENSCATG00000022515) #19	SLC10A3 (ENSCATG00000032881) #20	UBL4A (ENSCATG00000036850) #21	LAGE3 (ENSCATG00000025654) #22	PLXNA3 (ENSCATG00000031009) #23	FAM50A (ENSCATG00000032169) #24	GDI1 (ENSCATG00000031684) #25	ATP6AP1 (ENSCATG00000039938) #26	TAFAZZIN (ENSCATG00000034866) #27	DNASE1L1 (ENSCATG00000014042) #28	ENSCATG00000030970 ##29
Drill	MODERN SPECIES	361									ENSMLEG00000009651	ENSMLEG00000037003	IKBKG (ENSMLEG00000032380) #17	G6PD (ENSMLEG00000040869) #18	FAM3A (ENSMLEG00000031424) #19	SLC10A3 (ENSMLEG00000031363) #20	UBL4A (ENSMLEG00000029271) #21	LAGE3 (ENSMLEG00000031787) #22	PLXNA3 (ENSMLEG00000039715) #23	FAM50A (ENSMLEG00000034206) #24	GDI1 (ENSMLEG00000014459) #25	ATP6AP1 (ENSMLEG00000026333) #26	TAFAZZIN (ENSMLEG00000041537) #27	DNASE1L1 (ENSMLEG00000042325) #28	ENSMLEG00000025660 ##29
Rhinopithecus	ANCESTRAL SPECIES	316							ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00910000147580	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
Golden snub-nosed monkey	MODERN SPECIES	1454						CTAG2 (ENSRROG00000025938) ##22	ENSRROG00000034699 ##22	ENSRROG00000013818	ENSRROG00000035084	IKBKG (ENSRROG00000008677) #17	G6PD (ENSRROG00000033216) #18	ENSRROG00000033119	FAM3A (ENSRROG00000043376) #19	SLC10A3 (ENSRROG00000044112) #20	UBL4A (ENSRROG00000006560) #21	LAGE3 (ENSRROG00000012840) #22	PLXNA3 (ENSRROG00000044893) #23	FAM50A (ENSRROG00000038239) #24	ATP6AP1 (ENSRROG00000026809) #26	TAFAZZIN (ENSRROG00000037988) #27	DNASE1L1 (ENSRROG00000037526) #28	ENSRROG00000019247 ##29
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00940000154046.b	ENSGT00390000008092.a.l	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00940000154046.b	ENSGT00390000008092.a.l	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b
Hominidae	ANCESTRAL SPECIES	10	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT01050000244883.A.a.a.a.a.d.d.b	ENSGT00940000155819.c.b.b	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00390000010786
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT01050000244883.A.a.a.a.a.d.d.b	ENSGT00940000163053.a	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054.g	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00390000010786
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT01050000244883.A.a.a.a.a.d.d.b	ENSGT00940000163053.a	ENSGT00530000064313.b.k	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054.g	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00390000010786
Pan	ANCESTRAL SPECIES	26	ENSGT01050000244883.A.a.a.a.a.d.d.b	ENSGT00940000163053.a	ENSGT00940000155819.c.a.b	ENSGT00940000154257.j	ENSGT00530000064313.b.k	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054.g	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT00990000203951	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00390000010786
Chimpanzee	MODERN SPECIES	22	ENSPTRG00000050684	ENSPTRG00000045087	ENSPTRG00000020865	ENSPTRG00000029293	ANKRD18B (ENSPTRG00000020960)	NOL6 (ENSPTRG00000020861)	AQP3 (ENSPTRG00000020860)	AQP7 (ENSPTRG00000052141)	NFX1 (ENSPTRG00000020858)	CHMP5 (ENSPTRG00000020857)	BAG1 (ENSPTRG00000020856)	SPINK4 (ENSPTRG00000020855)	B4GALT1 (ENSPTRG00000020854)	SMU1 (ENSPTRG00000020853)	DNAJA1 (ENSPTRG00000020852)	ENSPTRG00000038934 #22	APTX (ENSPTRG00000020850)	ENSPTRG00000049671	TMEM215 (ENSPTRG00000047390)	TAF1L (ENSPTRG00000020848)	NDUFB6 (ENSPTRG00000020846)	ENSPTRG00000046844	TOPORS (ENSPTRG00000029303)	RIGI (ENSPTRG00000020844)	ACO1 (ENSPTRG00000020843)	LINGO2 (ENSPTRG00000020840)	ENSPTRG00000043260	C9orf72 (ENSPTRG00000020839)	IFNK (ENSPTRG00000020838)	MOB3B (ENSPTRG00000020837)	EQTN (ENSPTRG00000020836)
Bonobo	MODERN SPECIES	22	PRSS3 (ENSPPAG00000034435)	ENSPPAG00000039531	ENSPPAG00000011749	ENSPPAG00000037329	ENSPPAG00000024464	NOL6 (ENSPPAG00000040840)	AQP3 (ENSPPAG00000042338)	ENSPPAG00000002141	NFX1 (ENSPPAG00000027871)	CHMP5 (ENSPPAG00000034164)	BAG1 (ENSPPAG00000027764)	ENSPPAG00000023247	B4GALT1 (ENSPPAG00000038905)	SMU1 (ENSPPAG00000032159)	DNAJA1 (ENSPPAG00000027533)	ENSPPAG00000043485 #22	APTX (ENSPPAG00000030295)	ENSPPAG00000030062	TMEM215 (ENSPPAG00000007092)	TAF1L (ENSPPAG00000003030)	NDUFB6 (ENSPPAG00000038130)	TOPORS (ENSPPAG00000043192)	RIGI (ENSPPAG00000041750)	ACO1 (ENSPPAG00000033498)	ENSPPAG00000031228	LINGO2 (ENSPPAG00000033214)	ENSPPAG00000000049	C9orf72 (ENSPPAG00000028395)	MOB3B (ENSPPAG00000042835)	EQTN (ENSPPAG00000042132)	TEK (ENSPPAG00000034261)
Gorilla	MODERN SPECIES	22	ENSGGOG00000013297	ENSGGOG00000024027	ENSGGOG00000000350	ENSGGOG00000039771	ENSGGOG00000037469	NOL6 (ENSGGOG00000003997)	AQP3 (ENSGGOG00000003993)	ENSGGOG00000043220	NFX1 (ENSGGOG00000006751)	CHMP5 (ENSGGOG00000016542)	BAG1 (ENSGGOG00000016534)	ENSGGOG00000016528	B4GALT1 (ENSGGOG00000009135)	SMU1 (ENSGGOG00000014802)	ENSGGOG00000007030	ENSGGOG00000041353 #22	APTX (ENSGGOG00000014232)	ENSGGOG00000027578	TMEM215 (ENSGGOG00000043117)	NDUFB6 (ENSGGOG00000010253)	ENSGGOG00000042900	TOPORS (ENSGGOG00000023417)	DDX58 (ENSGGOG00000016335)	ACO1 (ENSGGOG00000016306)	ENSGGOG00000041344	ENSGGOG00000006944	LINGO2 (ENSGGOG00000013148)	ENSGGOG00000036154	C9orf72 (ENSGGOG00000006338)	IFNK (ENSGGOG00000027413)	MOB3B (ENSGGOG00000004602)
Orangutan	MODERN SPECIES	22	UBE2R2 (ENSPPYG00000030043)	ENSPPYG00000019131	ENSPPYG00000019864	ENSPPYG00000037174	NOL6 (ENSPPYG00000019133)	ENSPPYG00000019134	ENSPPYG00000019135	NFX1 (ENSPPYG00000019136)	CHMP5 (ENSPPYG00000019137)	ENSPPYG00000019138	ENSPPYG00000019903	B4GALT1 (ENSPPYG00000019139)	SMU1 (ENSPPYG00000019140)	ENSPPYG00000034033	DNAJA1 (ENSPPYG00000019141)	ENSPPYG00000037290 #22	APTX (ENSPPYG00000019142)	TMEM215 (ENSPPYG00000019144)	TAF1L (ENSPPYG00000019145)	NDUFB6 (ENSPPYG00000019146)	SMIM27 (ENSPPYG00000039511)	TOPORS (ENSPPYG00000036532)	RIGI (ENSPPYG00000019149)	ACO1 (ENSPPYG00000019150)	LINGO2 (ENSPPYG00000019153)	C9orf72 (ENSPPYG00000019154)	MOB3B (ENSPPYG00000019156)	IFNK (ENSPPYG00000019155)	EQTN (ENSPPYG00000019157)	TEK (ENSPPYG00000019158)	IFT74 (ENSPPYG00000019159)
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00390000008092.a.k.b	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT00990000203951	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00940000154156.d.n.b.a.a.b	ENSGT00390000008092.a.k.b	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535	ENSGT00990000203951	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b
Vervet Monkey	MODERN SPECIES	3	ENSCSAG00000010030	KIF24 (ENSCSAG00000010024)	UBAP1 (ENSCSAG00000010017)	DCAF12 (ENSCSAG00000010014)	UBAP2 (ENSCSAG00000010007)	UBE2R2 (ENSCSAG00000009996)	NOL6 (ENSCSAG00000009990)	AQP3 (ENSCSAG00000009980)	ENSCSAG00000009978	NFX1 (ENSCSAG00000009971)	CHMP5 (ENSCSAG00000009962)	BAG1 (ENSCSAG00000009948)	SPINK4 (ENSCSAG00000009911)	B4GALT1 (ENSCSAG00000009902)	DNAJA1 (ENSCSAG00000009895)	ENSCSAG00000009888 #22	APTX (ENSCSAG00000009885)	TMEM215 (ENSCSAG00000000446)	TAF1L (ENSCSAG00000009875)	NDUFB6 (ENSCSAG00000009865)	TOPORS (ENSCSAG00000009840)	RIGI (ENSCSAG00000009834)	ACO1 (ENSCSAG00000009824)	LINGO2 (ENSCSAG00000000445)	ACTB (ENSCSAG00000000444)	C9orf72 (ENSCSAG00000009804)	MOB3B (ENSCSAG00000009793)	IFNK (ENSCSAG00000000443)	EQTN (ENSCSAG00000009785)	ENSCSAG00000000442	TEK (ENSCSAG00000009773)
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00940000154156.d.n.b.a.a.b	ENSGT00390000008092.a.k.b	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00390000007535.i.a	ENSGT00990000203951	ENSGT00940000155242.n	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b
Macaca	ANCESTRAL SPECIES	10	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.a.b	ENSGT00940000154156.d.n.b.a.a.b	ENSGT00940000158028	ENSGT00390000003453.a.f	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000006684	ENSGT00390000007535.i.a	ENSGT00990000203951	ENSGT00940000155242.n	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00390000009349.g	ENSGT00390000009366.c.a.b	ENSGT00950000183134.c.b.p	ENSGT00940000156665	ENSGT00390000005644	ENSGT01000000214430.b
Pig-tailed macaque	MODERN SPECIES	123	DCAF12 (ENSMNEG00000043536)	UBAP2 (ENSMNEG00000042154)	UBE2R2 (ENSMNEG00000032831)	NOL6 (ENSMNEG00000040252)	AQP3 (ENSMNEG00000043385)	ENSMNEG00000042356	ENSMNEG00000043754	NFX1 (ENSMNEG00000036057)	CHMP5 (ENSMNEG00000036968)	BAG1 (ENSMNEG00000039600)	SPINK4 (ENSMNEG00000037362)	ENSMNEG00000008759	B4GALT1 (ENSMNEG00000041003)	SMU1 (ENSMNEG00000028218)	ENSMNEG00000030895	ENSMNEG00000007231 #22	APTX (ENSMNEG00000042341)	TMEM215 (ENSMNEG00000013710)	NDUFB6 (ENSMNEG00000043320)	ENSMNEG00000031405	TOPORS (ENSMNEG00000032947)	RIGI (ENSMNEG00000041909)	ACO1 (ENSMNEG00000045040)	ENSMNEG00000007862	ENSMNEG00000020113	ENSMNEG00000026928	ENSMNEG00000035062
Macaca_a	ANCESTRAL SPECIES	10	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.b.b.b.b	ENSGT00940000158028	ENSGT00390000003453.a.f	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT01100000263493.a.b.b.a.a.b.b.b.b.a.b.b	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00390000009349.g	ENSGT00390000009366.c.a.b	ENSGT00940000156665	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00390000010786	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.a.b.b.a
Rhesus	MODERN SPECIES	6	UBAP2 (ENSMMUG00000012597)	ENSMMUG00000056939	UBE2R2 (ENSMMUG00000053200)	NOL6 (ENSMMUG00000000389)	AQP3 (ENSMMUG00000003314)	ENSMMUG00000051435	ENSMMUG00000001545	NFX1 (ENSMMUG00000043096)	CHMP5 (ENSMMUG00000020149)	BAG1 (ENSMMUG00000020148)	SPINK4 (ENSMMUG00000020146)	ENSMMUG00000038377	B4GALT1 (ENSMMUG00000064987)	SMU1 (ENSMMUG00000002088)	DNAJA1 (ENSMMUG00000007740)	ENSMMUG00000045559 #22	APTX (ENSMMUG00000007724)	TMEM215 (ENSMMUG00000053668)	TAF1L (ENSMMUG00000007965)	TOPORS (ENSMMUG00000002686)	SMIM27 (ENSMMUG00000060453)	RIGI (ENSMMUG00000012442)	ACO1 (ENSMMUG00000008196)	ENSMMUG00000006052	ENSMMUG00000018233	ENSMMUG00000058851	ENSMMUG00000049422	LINGO2 (ENSMMUG00000017199)	C9orf72 (ENSMMUG00000016508)	MOB3B (ENSMMUG00000062843)	IFNK (ENSMMUG00000064869)
Crab-eating macaque	MODERN SPECIES	6	ENSMFAG00000057810	ENSMFAG00000039567	ENSMFAG00000056652	ENSMFAG00000049067	NOL6 (ENSMFAG00000040117)	AQP3 (ENSMFAG00000043420)	ENSMFAG00000052920	ENSMFAG00000031174	NFX1 (ENSMFAG00000038715)	CHMP5 (ENSMFAG00000045456)	ENSMFAG00000044782	SPINK4 (ENSMFAG00000038354)	B4GALT1 (ENSMFAG00000003205)	SMU1 (ENSMFAG00000042584)	DNAJA1 (ENSMFAG00000032081)	ENSMFAG00000012369 #22	APTX (ENSMFAG00000043141)	TMEM215 (ENSMFAG00000024179)	TAF1L (ENSMFAG00000044417)	TOPORS (ENSMFAG00000000541)	SMIM27 (ENSMFAG00000040652)	RIGI (ENSMFAG00000045674)	ACO1 (ENSMFAG00000001702)	ENSMFAG00000023811	ENSMFAG00000026508	ENSMFAG00000062403	ENSMFAG00000055404	ENSMFAG00000061659	C9orf72 (ENSMFAG00000001152)	MOB3B (ENSMFAG00000041346)	IFNK (ENSMFAG00000052624)
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00940000154156.d.n.b.a.a.b	ENSGT00390000008092.a.k.b	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT01020000230598	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00390000005644	ENSGT01050000244898.a.a.a.b	ENSGT00390000010786	ENSGT00940000158840	ENSGT00940000161278
Olive baboon	MODERN SPECIES	4	UBAP1 (ENSPANG00000025315)	DCAF12 (ENSPANG00000025306)	ENSPANG00000025164	UBAP2 (ENSPANG00000025308)	UBE2R2 (ENSPANG00000025309)	NOL6 (ENSPANG00000025310)	AQP3 (ENSPANG00000048614)	ENSPANG00000025305	NFX1 (ENSPANG00000025304)	ENSPANG00000031145	BAG1 (ENSPANG00000025295)	SPINK4 (ENSPANG00000025296)	B4GALT1 (ENSPANG00000025297)	SMU1 (ENSPANG00000025298)	ENSPANG00000025299	ENSPANG00000025300 #22	APTX (ENSPANG00000025301)	TMEM215 (ENSPANG00000004499)	TAF1L (ENSPANG00000025302)	SMIM27 (ENSPANG00000035791)	TOPORS (ENSPANG00000025293)	RIGI (ENSPANG00000025269)	ACO1 (ENSPANG00000025270)	ENSPANG00000044228	ENSPANG00000039715	ENSPANG00000038383	LINGO2 (ENSPANG00000015960)	ENSPANG00000046846	C9orf72 (ENSPANG00000025272)	IFNK (ENSPANG00000037270)	EQTN (ENSPANG00000025274)
Cercopithecinae_d	ANCESTRAL SPECIES	77	ENSGT00940000158028	ENSGT00390000003453.a	ENSGT00940000158828	ENSGT00390000018619	ENSGT00940000157242	ENSGT00940000159054	ENSGT00940000156325	ENSGT00390000009368.p	ENSGT00550000074817.e.a.a	ENSGT00450000040296	ENSGT00530000064269	ENSGT01040000241496	ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.i.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806	ENSGT00390000004524.c.a.a.a.a.a.b	ENSGT00390000006684	ENSGT00940000155242.n	ENSGT00390000007535.i.a	ENSGT00990000203951	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772
Drill	MODERN SPECIES	776	DCAF12 (ENSMLEG00000021127)	UBAP2 (ENSMLEG00000018606)	UBE2R2 (ENSMLEG00000032177)	NOL6 (ENSMLEG00000043468)	AQP3 (ENSMLEG00000041927)	ENSMLEG00000026710	ENSMLEG00000018990	NFX1 (ENSMLEG00000040882)	CHMP5 (ENSMLEG00000033762)	BAG1 (ENSMLEG00000034585)	SPINK4 (ENSMLEG00000040991)	ENSMLEG00000026955	B4GALT1 (ENSMLEG00000043947)	SMU1 (ENSMLEG00000030655)	ENSMLEG00000042863	ENSMLEG00000005203 #22	APTX (ENSMLEG00000035137)	ENSMLEG00000037851	TMEM215 (ENSMLEG00000026942)	TAF1L (ENSMLEG00000022913)	ENSMLEG00000030362	ENSMLEG00000040677	ENSMLEG00000033489	TOPORS (ENSMLEG00000033550)	RIGI (ENSMLEG00000029982)	ACO1 (ENSMLEG00000005636)
Sooty mangabey	MODERN SPECIES	151	DCAF12 (ENSCATG00000040108)	UBAP2 (ENSCATG00000032355)	UBE2R2 (ENSCATG00000023159)	NOL6 (ENSCATG00000031690)	AQP3 (ENSCATG00000027633)	ENSCATG00000017421	ENSCATG00000032082	ENSCATG00000035143	ENSCATG00000038405	CHMP5 (ENSCATG00000044041)	BAG1 (ENSCATG00000013812)	ENSCATG00000029603	B4GALT1 (ENSCATG00000040156)	SMU1 (ENSCATG00000018325)	DNAJA1 (ENSCATG00000033398)	ENSCATG00000022489 #22	APTX (ENSCATG00000042639)	ENSCATG00000043534	TMEM215 (ENSCATG00000003669)	TOPORS (ENSCATG00000041380)	ENSCATG00000027078	RIGI (ENSCATG00000040246)	ACO1 (ENSCATG00000045333)
Rhinopithecus	ANCESTRAL SPECIES	664													ENSGT00940000155244	ENSGT00940000155007.k	ENSGT00940000153558.b.j.r.a	ENSGT00410000025802.g.a.n #22	ENSGT00940000156806
Black snub-nosed monkey	MODERN SPECIES	1849													B4GALT1 (ENSRBIG00000027929)	SMU1 (ENSRBIG00000027847)	ENSRBIG00000000324	ENSRBIG00000025902 #22	APTX (ENSRBIG00000042913)
Golden snub-nosed monkey	MODERN SPECIES	2095													B4GALT1 (ENSRROG00000045597)	SMU1 (ENSRROG00000044515)	ENSRROG00000029815	ENSRROG00000037829 #22	APTX (ENSRROG00000035395)
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647.g	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b.n ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426.a #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052	ENSGT00910000146917
Cebidae	ANCESTRAL SPECIES	27	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647.g	ENSGT00940000154783.e.a.a.a	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b.n ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426.a #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052	ENSGT00910000146917
Cebidae_a	ANCESTRAL SPECIES	78	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647.g	ENSGT00940000154783.e.a.a.a	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b.n ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426.a #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00910000147052	ENSGT00910000146917
Bolivian squirrel monkey	MODERN SPECIES	236	BRCC3 (ENSSBOG00000035771)	MTCP1 (ENSSBOG00000021241)	CMC4 (ENSSBOG00000033964)	ENSSBOG00000034180	F8 (ENSSBOG00000002240)	SMIM9 (ENSSBOG00000018626)	MPP1 (ENSSBOG00000026026)	DKC1 (ENSSBOG00000033746)	GAB3 (ENSSBOG00000027441)	ENSSBOG00000031845 ##22	IKBKG (ENSSBOG00000033453) #17	G6PD (ENSSBOG00000003239) #18	FAM3A (ENSSBOG00000030279) #19	SLC10A3 (ENSSBOG00000027728) #20	UBL4A (ENSSBOG00000030369) #21	LAGE3 (ENSSBOG00000024470) #22	PLXNA3 (ENSSBOG00000034877) #23	FAM50A (ENSSBOG00000029861) #24	GDI1 (ENSSBOG00000021247) #25	ATP6AP1 (ENSSBOG00000027327) #26	TAFAZZIN (ENSSBOG00000029961) #27	ENSSBOG00000033124	DNASE1L1 (ENSSBOG00000028977) #28	ENSSBOG00000025724 ##29	EMD (ENSSBOG00000027560) #30	FLNA (ENSSBOG00000035541) #31	TKTL1 (ENSSBOG00000020176) #32	TEX28 (ENSSBOG00000035728) #33	ENSSBOG00000022236 #34	ENSSBOG00000025722	MECP2 (ENSSBOG00000024999) #35
Capuchin	MODERN SPECIES	862									ENSCCAG00000030506 ##22	IKBKG (ENSCCAG00000030204) #17	G6PD (ENSCCAG00000033900) #18	ENSCCAG00000025941	FAM3A (ENSCCAG00000030432) #19	SLC10A3 (ENSCCAG00000020474) #20	UBL4A (ENSCCAG00000033285) #21	LAGE3 (ENSCCAG00000021965) #22	PLXNA3 (ENSCCAG00000029210) #23	FAM50A (ENSCCAG00000022089) #24	GDI1 (ENSCCAG00000023267) #25	ATP6AP1 (ENSCCAG00000026799) #26	TAZ (ENSCCAG00000033091) #27	DNASE1L1 (ENSCCAG00000038109) #28	ENSCCAG00000024992 #29
Marmoset	MODERN SPECIES	78	CMC4 (ENSCJAG00000078864)	ENSCJAG00000004287	ENSCJAG00000079192	ENSCJAG00000076498	F8 (ENSCJAG00000004258)	SMIM9 (ENSCJAG00000004256)	MPP1 (ENSCJAG00000004227)	DKC1 (ENSCJAG00000004210)	ENSCJAG00000082602	GAB3 (ENSCJAG00000016753)	IKBKG (ENSCJAG00000016764) #17	G6PD (ENSCJAG00000016775) #18	FAM3A (ENSCJAG00000016787) #19	SLC10A3 (ENSCJAG00000077479) #20	UBL4A (ENSCJAG00000074416) #21	LAGE3 (ENSCJAG00000041329) #22	PLXNA3 (ENSCJAG00000016816) #23	FAM50A (ENSCJAG00000063509) #24	GDI1 (ENSCJAG00000016910) #25	ATP6AP1 (ENSCJAG00000040642) #26	ENSCJAG00000016995 #27	DNASE1L1 (ENSCJAG00000011800) #28	ENSCJAG00000011822 ##29	EMD (ENSCJAG00000011853) #30	FLNA (ENSCJAG00000034881) #31	TKTL1 (ENSCJAG00000014368) #32	TEX28 (ENSCJAG00000042631) #33	ENSCJAG00000014412 #34	MECP2 (ENSCJAG00000016796) #35	IRAK1 (ENSCJAG00000014452) #36	RENBP (ENSCJAG00000014500)
Mas night monkey	MODERN SPECIES	1311	RAB39B (ENSANAG00000031228)	ENSANAG00000027213	BRCC3 (ENSANAG00000024915)	MTCP1 (ENSANAG00000028247)	ENSANAG00000029218	ENSANAG00000030681	F8 (ENSANAG00000025258)	MPP1 (ENSANAG00000034369)	DKC1 (ENSANAG00000022732)	GAB3 (ENSANAG00000032427)	IKBKG (ENSANAG00000032209) #17	G6PD (ENSANAG00000031927) #18	FAM3A (ENSANAG00000028348) #19	SLC10A3 (ENSANAG00000031182) #20	ENSANAG00000029762 #21	LAGE3 (ENSANAG00000032507) #22	PLXNA3 (ENSANAG00000027264) #23	FAM50A (ENSANAG00000031398) #24	GDI1 (ENSANAG00000028381) #25	ATP6AP1 (ENSANAG00000036139) #26	TAFAZZIN (ENSANAG00000022392) #27	DNASE1L1 (ENSANAG00000019417) #28	ENSANAG00000036053 #29
Tarsier	MODERN SPECIES	843													FAM3A (ENSTSYG00000025401) #19	UBL4A (ENSTSYG00000032767) #21	SLC10A3 (ENSTSYG00000000676) #20	LAGE3 (ENSTSYG00000028660) #22
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00410000025802.g.a #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00410000025802.g.a #22
Armadillo	MODERN SPECIES	3448															ENSDNOG00000036342	ENSDNOG00000048873 #22	SCLY (ENSDNOG00000017283)	ENSDNOG00000035870
Eutheria	ANCESTRAL SPECIES	115															ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238
Boreoeutheria	ANCESTRAL SPECIES	53															ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT01030000235238
Laurasiatheria	ANCESTRAL SPECIES	58															ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT01030000235238
Laurasiatheria_a	ANCESTRAL SPECIES	52															ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT01030000235238
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT01030000235238	ENSGT00410000025802.h ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904
Suina	ANCESTRAL SPECIES	7	ENSGT00940000153588.b #31	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.f #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000161397
Chacoan peccary	MODERN SPECIES	44	DNASE1L1 (ENSCWAG00000021201) #28	TAFAZZIN (ENSCWAG00000021221) #27	ATP6AP1 (ENSCWAG00000021247) #26	GDI1 (ENSCWAG00000021263) #25	FAM50A (ENSCWAG00000021283) #24	PLXNA3 (ENSCWAG00000021299) #23	ENSCWAG00000021347 #22	ENSCWAG00000021354	UBL4A (ENSCWAG00000000008) #21	SLC10A3 (ENSCWAG00000000012) #20	FAM3A (ENSCWAG00000000031) #19	G6PD (ENSCWAG00000000077) #18	IKBKG (ENSCWAG00000000145) #17	ENSCWAG00000000203	ENSCWAG00000000223	ENSCWAG00000000236 ##22	GAB3 (ENSCWAG00000000272)	DKC1 (ENSCWAG00000000314)	MPP1 (ENSCWAG00000000412)	SMIM9 (ENSCWAG00000000458)	ENSCWAG00000000473	ENSCWAG00000000488	ENSCWAG00000000499	FUNDC2 (ENSCWAG00000000516)	CMC4 (ENSCWAG00000000535)	MTCP1 (ENSCWAG00000000545)	BRCC3 (ENSCWAG00000000584)	ENSCWAG00000000727	RAB39B (ENSCWAG00000000758)	CLIC2 (ENSCWAG00000000773)	ENSCWAG00000000788
Pig	MODERN SPECIES	300	FLNA (ENSSSCG00000033299) #31	RPL10 (ENSSSCG00000035997) #29	DNASE1L1 (ENSSSCG00000037032) #28	TAFAZZIN (ENSSSCG00000039655) #27	ATP6AP1 (ENSSSCG00000037310) #26	GDI1 (ENSSSCG00000030421) #25	FAM50A (ENSSSCG00000025303) #24	PLXNA3 (ENSSSCG00000023483) #23	ENSSSCG00000032959 #22	ENSSSCG00000057536 #21	SLC10A3 (ENSSSCG00000025766) #20	FAM3A (ENSSSCG00000028934) #19	G6PD (ENSSSCG00000025108) #18	IKBKG (ENSSSCG00000012825) #17	ENSSSCG00000012827	ENSSSCG00000049540 ##22	GAB3 (ENSSSCG00000012824)	DKC1 (ENSSSCG00000012823)	F8 (ENSSSCG00000012822)	SMIM9 (ENSSSCG00000055917)	ENSSSCG00000057758	ENSSSCG00000054901	FUNDC2 (ENSSSCG00000012817)	CMC4 (ENSSSCG00000062015)	MTCP1 (ENSSSCG00000012816)	BRCC3 (ENSSSCG00000012813)	ENSSSCG00000012812	VBP1 (ENSSSCG00000012811)	RAB39B (ENSSSCG00000024233)	ENSSSCG00000057979	ENSSSCG00000055307
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238	ENSGT00410000025802.h ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904
Camelidae	DUPLICATION
Camelidae	ANCESTRAL SPECIES	159																ENSGT00410000025802.g.b.a ##22	ENSGT01030000235238
Arabian camel	MODERN SPECIES	204	ENSCDRG00005018049	RAB39B (ENSCDRG00005017901)	VBP1 (ENSCDRG00005017794)	BRCC3 (ENSCDRG00005017635)	MTCP1 (ENSCDRG00005017604)	CMC4 (ENSCDRG00005017574)	ENSCDRG00005017538	F8 (ENSCDRG00005017422)	SMIM9 (ENSCDRG00005017392)	MPP1 (ENSCDRG00005017184)	DKC1 (ENSCDRG00005017117)	ENSCDRG00005017097 ##22	GAB3 (ENSCDRG00005016636)	ENSCDRG00005016586 ##22	ENSCDRG00005016563 ##22	ENSCDRG00005016521 ##22	ENSCDRG00005016489	IKBKG (ENSCDRG00005016363) #17	G6PD (ENSCDRG00005016281) #18	FAM3A (ENSCDRG00005016065) #19	SLC10A3 (ENSCDRG00005016014) #20	LAGE3 (ENSCDRG00005015984) #22	FAM50A (ENSCDRG00005012822) #24	GDI1 (ENSCDRG00005012702) #25	ATP6AP1 (ENSCDRG00005012618) #26	TAZ (ENSCDRG00005012375) #27	DNASE1L1 (ENSCDRG00005012179) #28	ENSCDRG00005012077 #29	ENSCDRG00005011914 #30	FLNA (ENSCDRG00005011684) #31	TKTL1 (ENSCDRG00005011584) #32
Alpaca	MODERN SPECIES	5548																ENSVPAG00000002290 ##22	ENSVPAG00000002291
Camelidae	ANCESTRAL SPECIES	107	ENSGT00530000063582.a	ENSGT00940000161397	ENSGT00940000163020	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.c ##22	ENSGT00410000025802.g.b.b ##22	ENSGT00410000025802.h.d ##22
Arabian camel	MODERN SPECIES	204	TMLHE (ENSCDRG00005018097)	CLIC2 (ENSCDRG00005018062)	ENSCDRG00005018049	RAB39B (ENSCDRG00005017901)	VBP1 (ENSCDRG00005017794)	BRCC3 (ENSCDRG00005017635)	MTCP1 (ENSCDRG00005017604)	CMC4 (ENSCDRG00005017574)	ENSCDRG00005017538	F8 (ENSCDRG00005017422)	SMIM9 (ENSCDRG00005017392)	MPP1 (ENSCDRG00005017184)	DKC1 (ENSCDRG00005017117)	ENSCDRG00005017097 ##22	GAB3 (ENSCDRG00005016636)	ENSCDRG00005016586 ##22	ENSCDRG00005016563 ##22	ENSCDRG00005016521 ##22	ENSCDRG00005016489	IKBKG (ENSCDRG00005016363) #17	G6PD (ENSCDRG00005016281) #18	FAM3A (ENSCDRG00005016065) #19	SLC10A3 (ENSCDRG00005016014) #20	LAGE3 (ENSCDRG00005015984) #22	FAM50A (ENSCDRG00005012822) #24	GDI1 (ENSCDRG00005012702) #25	ATP6AP1 (ENSCDRG00005012618) #26	TAZ (ENSCDRG00005012375) #27	DNASE1L1 (ENSCDRG00005012179) #28	ENSCDRG00005012077 #29	ENSCDRG00005011914 #30
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132
Cetacea	ANCESTRAL SPECIES	19	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A.n #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f.d.a	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A.m #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f.d.a	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132
Sperm whale	MODERN SPECIES	13	TEX28 (ENSPCTG00005022073) #33	ENSPCTG00005022081	TKTL1 (ENSPCTG00005012476) #32	FLNA (ENSPCTG00005012993) #31	EMD (ENSPCTG00005013517) #30	RPL10 (ENSPCTG00005013674) #29	DNASE1L1 (ENSPCTG00005013759) #28	FAM3A (ENSPCTG00005013803) #18	SLC10A3 (ENSPCTG00005014048) #20	UBL4A (ENSPCTG00005014090) #21	ENSPCTG00005014136 #22	PLXNA3 (ENSPCTG00005014209) #23	FAM50A (ENSPCTG00005014324) #24	GDI1 (ENSPCTG00005014385) #25	IKBKG (ENSPCTG00005014430) #17	ENSPCTG00005014674 ##22	GAB3 (ENSPCTG00005014727)	DKC1 (ENSPCTG00005014862)	MPP1 (ENSPCTG00005014958)	SMIM9 (ENSPCTG00005015221)	F8 (ENSPCTG00005015296)	ENSPCTG00005015667	F8A1 (ENSPCTG00005015687)	FUNDC2 (ENSPCTG00005015711)	CMC4 (ENSPCTG00005015746)	MTCP1 (ENSPCTG00005015780)	BRCC3 (ENSPCTG00005015822)	VBP1 (ENSPCTG00005016073)	RAB39B (ENSPCTG00005016182)	ENSPCTG00005016223	CLIC2 (ENSPCTG00005016241)
Pecora	ANCESTRAL SPECIES	91															ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238.f
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	898																ENSCHYG00000018359 ##22
Yarkand deer	MODERN SPECIES	1323	TKTL1 (ENSCHYG00000024748) #32	EMD (ENSCHYG00000024666) #30	IKBKG (ENSCHYG00000024518) #17	G6PD (ENSCHYG00000024413) #18	ENSCHYG00000024202 #19	LAGE3 (ENSCHYG00000024139) #22	PLXNA3 (ENSCHYG00000023890) #23	GDI1 (ENSCHYG00000023645) #25	ATP6AP1 (ENSCHYG00000023535) #26	TAFAZZIN (ENSCHYG00000022770) #27	DNASE1L1 (ENSCHYG00000022608) #28	ENSCHYG00000022474 #29	FLNA (ENSCHYG00000021422) #31	ENSCHYG00000021292	ENSCHYG00000021269	ENSCHYG00000021240 ##22	ENSCHYG00000021194	ENSCHYG00000021132 ##22	GAB3 (ENSCHYG00000020865)	DKC1 (ENSCHYG00000020555)	MPP1 (ENSCHYG00000020123)	ENSCHYG00000020059	F8 (ENSCHYG00000019104)	FUNDC2 (ENSCHYG00000018987)	CMC4 (ENSCHYG00000018917)	MTCP1 (ENSCHYG00000018801)	ENSCHYG00000018655	ENSCHYG00000018338	RAB39B (ENSCHYG00000018283)	CLIC2 (ENSCHYG00000018163)	ENSCHYG00000018139
Yarkand deer	MODERN SPECIES	1323	IKBKG (ENSCHYG00000024518) #17	G6PD (ENSCHYG00000024413) #18	ENSCHYG00000024202 #19	LAGE3 (ENSCHYG00000024139) #22	PLXNA3 (ENSCHYG00000023890) #23	GDI1 (ENSCHYG00000023645) #25	ATP6AP1 (ENSCHYG00000023535) #26	TAFAZZIN (ENSCHYG00000022770) #27	DNASE1L1 (ENSCHYG00000022608) #28	ENSCHYG00000022474 #29	FLNA (ENSCHYG00000021422) #31	ENSCHYG00000021292	ENSCHYG00000021269	ENSCHYG00000021240 ##22	ENSCHYG00000021194	ENSCHYG00000021132 ##22	GAB3 (ENSCHYG00000020865)	DKC1 (ENSCHYG00000020555)	MPP1 (ENSCHYG00000020123)	ENSCHYG00000020059	F8 (ENSCHYG00000019104)	FUNDC2 (ENSCHYG00000018987)	CMC4 (ENSCHYG00000018917)	MTCP1 (ENSCHYG00000018801)	ENSCHYG00000018655	ENSCHYG00000018338	RAB39B (ENSCHYG00000018283)	CLIC2 (ENSCHYG00000018163)	ENSCHYG00000018139	SPRY3 (ENSCHYG00000018105)	VAMP7 (ENSCHYG00000017918)
Percora_a	ANCESTRAL SPECIES	92															ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238.f
Bovidae	ANCESTRAL SPECIES	33															ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238.f	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.b ##29	ENSGT00390000002034 #30
Caprinae	ANCESTRAL SPECIES	163																ENSGT00410000025802.g.b ##22	ENSGT01030000235238.f
Goat	DUPLICATION
Goat	MODERN SPECIES	104																ENSCHIG00000016614 ##22	IKBKG (ENSCHIG00000023525) #17	G6PD (ENSCHIG00000015034) #18	FAM3A (ENSCHIG00000011233) #19	UBL4A (ENSCHIG00000023962) #21
Goat	MODERN SPECIES	63																ENSCHIG00000015020 ##22	ENSCHIG00000020460	ENSCHIG00000009598
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020017633	ENSOARG00020017655	RIDA (ENSOARG00020017680)	CLIC2 (ENSOARG00020017713)	SPRY3 (ENSOARG00020017989)	VAMP7 (ENSOARG00020018024)	ENSOARG00020018236	ENSOARG00020018387	ENSOARG00020018399	ENSOARG00020018429	ENSOARG00020018446	ENSOARG00020018476	ENSOARG00020018489	ENSOARG00020018504	ENSOARG00020018525	ENSOARG00020018581 ##22	ENSOARG00020018615	ENSOARG00020018678	ENSOARG00020018703	ENSOARG00020018745 ##22	ENSOARG00020018798 #22	IKBKG (ENSOARG00020018901) #17	G6PD (ENSOARG00020019292) #18	SLC10A3 (ENSOARG00020019833) #20	UBL4A (ENSOARG00020019884) #21	PLXNA3 (ENSOARG00020019933) #23	FAM50A (ENSOARG00020020129) #24	GDI1 (ENSOARG00020020178) #25	ATP6AP1 (ENSOARG00020020475) #26	TAFAZZIN (ENSOARG00020020574) #27	DNASE1L1 (ENSOARG00020021378) #28
Rambouillet Sheep	MODERN SPECIES	205	SPRY3 (ENSOARG00020017989)	VAMP7 (ENSOARG00020018024)	ENSOARG00020018236	ENSOARG00020018387	ENSOARG00020018399	ENSOARG00020018429	ENSOARG00020018446	ENSOARG00020018476	ENSOARG00020018489	ENSOARG00020018504	ENSOARG00020018525	ENSOARG00020018581 ##22	ENSOARG00020018615	ENSOARG00020018678	ENSOARG00020018703	ENSOARG00020018745 ##22	ENSOARG00020018798 #22	IKBKG (ENSOARG00020018901) #17	G6PD (ENSOARG00020019292) #18	SLC10A3 (ENSOARG00020019833) #20	UBL4A (ENSOARG00020019884) #21	PLXNA3 (ENSOARG00020019933) #23	FAM50A (ENSOARG00020020129) #24	GDI1 (ENSOARG00020020178) #25	ATP6AP1 (ENSOARG00020020475) #26	TAFAZZIN (ENSOARG00020020574) #27	DNASE1L1 (ENSOARG00020021378) #28	RPL10 (ENSOARG00020021458) #29	EMD (ENSOARG00020021549) #30	FLNA (ENSOARG00020021631) #31	TKTL1 (ENSOARG00020021994) #32
Bovinae	ANCESTRAL SPECIES	46															ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Bos	ANCESTRAL SPECIES	36	ENSGT00940000153412.A.a.d	ENSGT00940000159149	ENSGT00940000159092.d	ENSGT00480000042679.a	ENSGT00940000159162	ENSGT00940000154837.f.b.d.a	ENSGT00940000164266	ENSGT00940000157822	ENSGT00940000154837.f.b.d.b	ENSGT00940000159951.d.b.b.a.c.b	ENSGT00730000111097.e	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.b ##29	ENSGT00390000002034 #30
Bos_b	ANCESTRAL SPECIES	31	ENSGT00940000164266	ENSGT00940000157822	ENSGT00940000154837.f.b.d.b.b	ENSGT00730000111097.e	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00960000192909	ENSGT00940000161825.v.a.a.a	ENSGT00390000012182.i.a.b	ENSGT00390000012182.i.a.a.b	ENSGT00940000161825.v.a.b	ENSGT00910000144363.g.a.a.a.a.a.a.a	ENSGT00910000144363.g.a.a.a.a.b	ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT00940000160561.d.b	ENSGT00530000063808.a #17	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.b ##29
Cow	DUPLICATION
Cow	DUPLICATION
Cow	MODERN SPECIES	142																ENSBTAG00000051689 ##22
Cow	MODERN SPECIES	177	ENSBTAG00000053993	FAM133A (ENSBTAG00000011277)	ENSBTAG00000001911	ENSBTAG00000051994	ENSBTAG00000033749	PABPC5 (ENSBTAG00000019942)	ENSBTAG00000049694	ENSBTAG00000033445	ENSBTAG00000049844	ENSBTAG00000036343	ENSBTAG00000049678	ENSBTAG00000048281	ENSBTAG00000054052	ENSBTAG00000049584	ENSBTAG00000052652	ENSBTAG00000053848 ##22	ENSBTAG00000055292	ENSBTAG00000048914 ##22	ENSBTAG00000001900	IKBKG (ENSBTAG00000006268) #17	ENSBTAG00000053534	G6PD (ENSBTAG00000019512) #18	FAM3A (ENSBTAG00000012747) #19	SLC10A3 (ENSBTAG00000014333) #20	UBL4A (ENSBTAG00000014331) #21	LAGE3 (ENSBTAG00000054868) #22	PLXNA3 (ENSBTAG00000008552) #23	FAM50A (ENSBTAG00000033032) #24	GDI1 (ENSBTAG00000012125) #25	ATP6AP1 (ENSBTAG00000012117) #26	TAFAZZIN (ENSBTAG00000007456) #27
Cow	MODERN SPECIES	177	ENSBTAG00000001911	ENSBTAG00000051994	ENSBTAG00000033749	PABPC5 (ENSBTAG00000019942)	ENSBTAG00000049694	ENSBTAG00000033445	ENSBTAG00000049844	ENSBTAG00000036343	ENSBTAG00000049678	ENSBTAG00000048281	ENSBTAG00000054052	ENSBTAG00000049584	ENSBTAG00000052652	ENSBTAG00000053848 ##22	ENSBTAG00000055292	ENSBTAG00000048914 ##22	ENSBTAG00000001900	IKBKG (ENSBTAG00000006268) #17	ENSBTAG00000053534	G6PD (ENSBTAG00000019512) #18	FAM3A (ENSBTAG00000012747) #19	SLC10A3 (ENSBTAG00000014333) #20	UBL4A (ENSBTAG00000014331) #21	LAGE3 (ENSBTAG00000054868) #22	PLXNA3 (ENSBTAG00000008552) #23	FAM50A (ENSBTAG00000033032) #24	GDI1 (ENSBTAG00000012125) #25	ATP6AP1 (ENSBTAG00000012117) #26	TAFAZZIN (ENSBTAG00000007456) #27	DNASE1L1 (ENSBTAG00000007455) #28	RPL10 (ENSBTAG00000007454) ##29
Hybrid Bos Indicus	MODERN SPECIES	315	DIAPH2 (ENSBIXG00005014924)	ENSBIXG00005014883	ENSBIXG00005007127	ENSBIXG00005006377	FAM133A (ENSBIXG00005014766)	ENSBIXG00005005495	ENSBIXG00005014508	ENSBIXG00005014480	PABPC5 (ENSBIXG00005006433)	ENSBIXG00005014439	ENSBIXG00005014423	ENSBIXG00005014407	ENSBIXG00005005973	ENSBIXG00005006735	ENSBIXG00005014316	ENSBIXG00005001881 ##22	ENSBIXG00005014255	ENSBIXG00005000250	IKBKG (ENSBIXG00005014233) #17	G6PD (ENSBIXG00005014158) #18	ENSBIXG00005014028	SLC10A3 (ENSBIXG00005013999) #20	ENSBIXG00005013979 #21	LAGE3 (ENSBIXG00005006122) #22	PLXNA3 (ENSBIXG00005013935) #23	FAM50A (ENSBIXG00005013872) #24	GDI1 (ENSBIXG00005001727) #25	ATP6AP1 (ENSBIXG00005001714) #26	ENSBIXG00005013746 #27	DNASE1L1 (ENSBIXG00005005490) #28	ENSBIXG00005001627 ##29
Bos_a	ANCESTRAL SPECIES	39	ENSGT00940000159162	ENSGT00940000154837.f.b.d.a	ENSGT00940000157822	ENSGT00940000154837.f.b.d.b	ENSGT00940000159951.d.b.b.a.c.b	ENSGT00730000111097.e	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00940000161825.v.a.a.a	ENSGT00940000161825.v.a.b	ENSGT00390000001700.a.b.b.a.b	ENSGT00910000144363.g.a.a.a.a.a	ENSGT00910000144363.g.a.a.a.a.b	ENSGT00940000154891	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #18	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.a ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Domestic yak	MODERN SPECIES	69	ENSBGRG00000026355	ENSBGRG00000026351	PABPC5 (ENSBGRG00000026348)	ENSBGRG00000026345	ENSBGRG00000026343	ENSBGRG00000026339	ENSBGRG00000026338	ENSBGRG00000026335	ENSBGRG00000026333	ENSBGRG00000026332	ENSBGRG00000026328	ENSBGRG00000026327	ENSBGRG00000026324	ENSBGRG00000026319	ENSBGRG00000026315	ENSBGRG00000026304 ##22	IKBKG (ENSBGRG00000026284) #17	ENSBGRG00000026272	G6PD (ENSBGRG00000026248) #18	SLC10A3 (ENSBGRG00000026237) #20	UBL4A (ENSBGRG00000026234) #21	ENSBGRG00000026228 #22	PLXNA3 (ENSBGRG00000024820) #23	FAM50A (ENSBGRG00000024395) #24	ATP6AP1 (ENSBGRG00000024299) #26	TAFAZZIN (ENSBGRG00000024079) #27	DNASE1L1 (ENSBGRG00000024010) #28	ENSBGRG00000023896 ##29	EMD (ENSBGRG00000023778) #30	GDI1 (ENSBGRG00000023696) #25	FLNA (ENSBGRG00000023487) #31
Wild yak	MODERN SPECIES	3176																ENSBMUG00000010764 ##22
Siberian musk deer	MODERN SPECIES	14																ENSMMSG00000013493 ##22	IKBKG (ENSMMSG00000013522) #17	G6PD (ENSMMSG00000013593) #18	ENSMMSG00000013656 #19	SLC10A3 (ENSMMSG00000013825) #20	UBL4A (ENSMMSG00000013839) #21	LAGE3 (ENSMMSG00000013858) #22	PLXNA3 (ENSMMSG00000013876) #23	ENSMMSG00000013933 #24	GDI1 (ENSMMSG00000013993) #25	ATP6AP1 (ENSMMSG00000014033) #26	TAFAZZIN (ENSMMSG00000014064) #27	ENSMMSG00000014152 #28	ENSMMSG00000014213 #29	EMD (ENSMMSG00000014247) #30	FLNA (ENSMMSG00000014357) #31
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h ##22	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519	ENSGT00940000158132
Carnivora	ANCESTRAL SPECIES	11	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30
Caniformia	ANCESTRAL SPECIES	22	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000016992	ENSGT00940000163020	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.h ##22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01030000235238.c	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000006885.a	ENSGT00390000000360.r.c.b	ENSGT00390000012647	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519	ENSGT00940000158132	ENSGT00940000161397
Ursidae	ANCESTRAL SPECIES	45	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.h ##22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744.p	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000013102.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519	ENSGT00940000158132	ENSGT00940000161397
Ursus	ANCESTRAL SPECIES	215																ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744.p	ENSGT00940000163020	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000013102.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.c.b	ENSGT00390000018904	ENSGT00910000148519	ENSGT00940000158132	ENSGT00940000161397	ENSGT00530000063582.a
American black bear	MODERN SPECIES	6584																ENSUAMG00000012288 ##22
Polar bear	MODERN SPECIES	139																ENSUMAG00000016855 ##22	GAB3 (ENSUMAG00000016863)	DKC1 (ENSUMAG00000016899)	MPP1 (ENSUMAG00000017156)	F8 (ENSUMAG00000017227)	ENSUMAG00000017273	FUNDC2 (ENSUMAG00000017279)	ENSUMAG00000017285	CMC4 (ENSUMAG00000017289)	MTCP1 (ENSUMAG00000017296)	BRCC3 (ENSUMAG00000017317)	VBP1 (ENSUMAG00000017374)	ENSUMAG00000017379	RAB39B (ENSUMAG00000017386)	CLIC2 (ENSUMAG00000017393)	TMLHE (ENSUMAG00000017400)
Canidae	ANCESTRAL SPECIES	50	ENSGT00530000063582.a	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647.a	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000158744	ENSGT00510000047092.a	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.g #22	ENSGT00410000025802.g.a.h #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h ##22	ENSGT00410000025802.g.b.k ##22	ENSGT00940000159803	ENSGT00510000047092.a	ENSGT00940000158744	ENSGT00940000163020	ENSGT00390000016992.m	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000006885.a	ENSGT00390000012647.a	ENSGT00390000000360.r.c.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397	ENSGT00530000063582.a	ENSGT00950000185382
Dingo	MODERN SPECIES	383	TAFAZZIN (ENSCAFG00020009089) #27	ATP6AP1 (ENSCAFG00020009077) #26	GDI1 (ENSCAFG00020009070) #25	FAM50A (ENSCAFG00020009064) #24	PLXNA3 (ENSCAFG00020009040) #23	ENSCAFG00020009037 #22	UBL4A (ENSCAFG00020009032) #21	SLC10A3 (ENSCAFG00020009027) #20	FAM3A (ENSCAFG00020009021) #19	G6PD (ENSCAFG00020008999) #18	IKBKG (ENSCAFG00020008992) #17	ENSCAFG00020008988	ENSCAFG00020008985	ENSCAFG00020008976 ##22	ENSCAFG00020008968 #22	ENSCAFG00020008959 ##22	ENSCAFG00020008942	ENSCAFG00020008918	MPP1 (ENSCAFG00020008744)	ENSCAFG00020008739	ENSCAFG00020008736	F8 (ENSCAFG00020008704)	FUNDC2 (ENSCAFG00020008699)	MTCP1 (ENSCAFG00020008697)	CMC4 (ENSCAFG00020008696)	ENSCAFG00020008684	VBP1 (ENSCAFG00020008675)	RAB39B (ENSCAFG00020008673)	CLIC2 (ENSCAFG00020008670)	ENSCAFG00020008667	ENSCAFG00020008665
Dog	MODERN SPECIES	144	SPRY3 (ENSCAFG00845018191)	ENSCAFG00845018126	CLIC2 (ENSCAFG00845017998)	RAB39B (ENSCAFG00845017965)	VBP1 (ENSCAFG00845017867)	MTCP1 (ENSCAFG00845030350)	CMC4 (ENSCAFG00845030338)	FUNDC2 (ENSCAFG00845030300)	ENSCAFG00845030278	ENSCAFG00845030269	F8 (ENSCAFG00845030098)	MPP1 (ENSCAFG00845029936)	DKC1 (ENSCAFG00845029852)	ENSCAFG00845029817 ##22	LAGE3 (ENSCAFG00845029708) #22	ENSCAFG00845029697 ##22	ENSCAFG00845029686 ##22	cOR7R1 (ENSCAFG00845029673)	IKBKG (ENSCAFG00845029634) #17	G6PD (ENSCAFG00845029388) #18	ENSCAFG00845029578 #19	SLC10A3 (ENSCAFG00845029316) #20	UBL4A (ENSCAFG00845029287) #21	ENSCAFG00845029273 #22	PLXNA3 (ENSCAFG00845029121) #23	FAM50A (ENSCAFG00845029041) #24	ATP6AP1 (ENSCAFG00845029004) #26	GDI1 (ENSCAFG00845028921) #25	TAZ (ENSCAFG00845028739) #27	DNASE1L1 (ENSCAFG00845028675) #28	RPL10 (ENSCAFG00845028627) ##29
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b.l ##22
Dog	MODERN SPECIES	144	TAZ (ENSCAFG00845028739) #27	GDI1 (ENSCAFG00845028921) #25	ATP6AP1 (ENSCAFG00845029004) #26	FAM50A (ENSCAFG00845029041) #24	PLXNA3 (ENSCAFG00845029121) #23	ENSCAFG00845029273 #22	UBL4A (ENSCAFG00845029287) #21	SLC10A3 (ENSCAFG00845029316) #20	ENSCAFG00845029578 #19	G6PD (ENSCAFG00845029388) #18	IKBKG (ENSCAFG00845029634) #17	cOR7R1 (ENSCAFG00845029673)	ENSCAFG00845029686 ##22	ENSCAFG00845029697 ##22	LAGE3 (ENSCAFG00845029708) #22	ENSCAFG00845029817 ##22	DKC1 (ENSCAFG00845029852)	MPP1 (ENSCAFG00845029936)	F8 (ENSCAFG00845030098)	ENSCAFG00845030269	ENSCAFG00845030278	FUNDC2 (ENSCAFG00845030300)	CMC4 (ENSCAFG00845030338)	MTCP1 (ENSCAFG00845030350)	VBP1 (ENSCAFG00845017867)	RAB39B (ENSCAFG00845017965)	CLIC2 (ENSCAFG00845017998)	ENSCAFG00845018126	SPRY3 (ENSCAFG00845018191)	VAMP7 (ENSCAFG00845018278)	ENSCAFG00845018459
Red fox	MODERN SPECIES	20																ENSVVUG00000020739 ##22	DKC1 (ENSVVUG00000020734)	MPP1 (ENSVVUG00000020728)	F8 (ENSVVUG00000020717)	FUNDC2 (ENSVVUG00000020713)	CMC4 (ENSVVUG00000020710)	MTCP1 (ENSVVUG00000020711)	ENSVVUG00000020709	ENSVVUG00000020707	ENSVVUG00000020703	ADAP2 (ENSVVUG00000020701)	RNF135 (ENSVVUG00000020698)	ENSVVUG00000020695	RHOT1 (ENSVVUG00000020640)	RHBDL3 (ENSVVUG00000020629)	CUNH17orf75 (ENSVVUG00000020625)
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00940000162426 #32	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES	52	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.g.b.n ##22	ENSGT00410000025802.g.b.m ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397	ENSGT00530000063582.a	ENSGT00950000185382	ENSGT00950000183055.a.b
Donkey	DUPLICATION
Donkey	MODERN SPECIES	36	DNASE1L1 (ENSEASG00005028299) #28	TAFAZZIN (ENSEASG00005025100) #27	ATP6AP1 (ENSEASG00005034458) #26	GDI1 (ENSEASG00005018454) #25	FAM50A (ENSEASG00005018449) #24	PLXNA3 (ENSEASG00005018440) #23	UBL4A (ENSEASG00005018436) #21	SLC10A3 (ENSEASG00005018434) #20	FAM3A (ENSEASG00005018431) #19	G6PD (ENSEASG00005018430) #18	ENSEASG00005032513 #17	ENSEASG00005032016 ##22	ENSEASG00005027434	ENSEASG00005031374	ENSEASG00005028284	ENSEASG00005034297 ##22	ENSEASG00005032503 ##22	ENSEASG00005033034	ENSEASG00005007484	MPP1 (ENSEASG00005007482)	SMIM9 (ENSEASG00005025831)	ENSEASG00005033689	ENSEASG00005004499	ENSEASG00005034088	ENSEASG00005036735	MTCP1 (ENSEASG00005004486)	BRCC3 (ENSEASG00005004482)	VBP1 (ENSEASG00005035328)	RAB39B (ENSEASG00005034031)	ENSEASG00005024036	ENSEASG00005001752
Donkey	MODERN SPECIES	36	TAFAZZIN (ENSEASG00005025100) #27	ATP6AP1 (ENSEASG00005034458) #26	GDI1 (ENSEASG00005018454) #25	FAM50A (ENSEASG00005018449) #24	PLXNA3 (ENSEASG00005018440) #23	UBL4A (ENSEASG00005018436) #21	SLC10A3 (ENSEASG00005018434) #20	FAM3A (ENSEASG00005018431) #19	G6PD (ENSEASG00005018430) #18	ENSEASG00005032513 #17	ENSEASG00005032016 ##22	ENSEASG00005027434	ENSEASG00005031374	ENSEASG00005028284	ENSEASG00005034297 ##22	ENSEASG00005032503 ##22	ENSEASG00005033034	ENSEASG00005007484	MPP1 (ENSEASG00005007482)	SMIM9 (ENSEASG00005025831)	ENSEASG00005033689	ENSEASG00005004499	ENSEASG00005034088	ENSEASG00005036735	MTCP1 (ENSEASG00005004486)	BRCC3 (ENSEASG00005004482)	VBP1 (ENSEASG00005035328)	RAB39B (ENSEASG00005034031)	ENSEASG00005024036	ENSEASG00005001752	ENSEASG00005001750
Horse	MODERN SPECIES	480	DNASE1L1 (ENSECAG00000003758) #28	TAFAZZIN (ENSECAG00000010872) #27	ATP6AP1 (ENSECAG00000014216) #26	GDI1 (ENSECAG00000017687) #25	FAM50A (ENSECAG00000023594) #24	PLXNA3 (ENSECAG00000025088) #23	LAGE3 (ENSECAG00000038130) #22	UBL4A (ENSECAG00000013506) #21	SLC10A3 (ENSECAG00000013796) #20	FAM3A (ENSECAG00000013840) #19	G6PD (ENSECAG00000014994) #18	IKBKG (ENSECAG00000020595) #17	ENSECAG00000033189	ENSECAG00000029643 ##22	ENSECAG00000056189	ENSECAG00000031652 ##22	GAB3 (ENSECAG00000023348)	DKC1 (ENSECAG00000023524)	MPP1 (ENSECAG00000009595)	F8 (ENSECAG00000015044)	ENSECAG00000033114	ENSECAG00000054244	ENSECAG00000029708	ENSECAG00000058802	FUNDC2 (ENSECAG00000026822)	MTCP1 (ENSECAG00000043072)	BRCC3 (ENSECAG00000021441)	VBP1 (ENSECAG00000001468)	ENSECAG00000047761	ENSECAG00000053801	RAB39B (ENSECAG00000007380)
Equus	ANCESTRAL SPECIES	52	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.g.b.n ##22	ENSGT00410000025802.g.b.m ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397	ENSGT00530000063582.a	ENSGT00950000185382
Donkey	MODERN SPECIES	36	TKTL1 (ENSEASG00005019179) #32	FLNA (ENSEASG00005018577) #31	EMD (ENSEASG00005019177) #30	ENSEASG00005025120 ##29	DNASE1L1 (ENSEASG00005028299) #28	TAFAZZIN (ENSEASG00005025100) #27	ATP6AP1 (ENSEASG00005034458) #26	GDI1 (ENSEASG00005018454) #25	FAM50A (ENSEASG00005018449) #24	PLXNA3 (ENSEASG00005018440) #23	UBL4A (ENSEASG00005018436) #21	SLC10A3 (ENSEASG00005018434) #20	FAM3A (ENSEASG00005018431) #19	G6PD (ENSEASG00005018430) #18	ENSEASG00005032513 #17	ENSEASG00005032016 ##22	ENSEASG00005027434	ENSEASG00005031374	ENSEASG00005028284	ENSEASG00005034297 ##22	ENSEASG00005032503 ##22	ENSEASG00005033034	ENSEASG00005007484	MPP1 (ENSEASG00005007482)	SMIM9 (ENSEASG00005025831)	ENSEASG00005033689	ENSEASG00005004499	ENSEASG00005034088	ENSEASG00005036735	MTCP1 (ENSEASG00005004486)	BRCC3 (ENSEASG00005004482)
Horse	MODERN SPECIES	480	ENSECAG00000047761	VBP1 (ENSECAG00000001468)	BRCC3 (ENSECAG00000021441)	MTCP1 (ENSECAG00000043072)	FUNDC2 (ENSECAG00000026822)	ENSECAG00000058802	ENSECAG00000029708	ENSECAG00000054244	ENSECAG00000033114	F8 (ENSECAG00000015044)	MPP1 (ENSECAG00000009595)	DKC1 (ENSECAG00000023524)	GAB3 (ENSECAG00000023348)	ENSECAG00000031652 ##22	ENSECAG00000056189	ENSECAG00000029643 ##22	ENSECAG00000033189	IKBKG (ENSECAG00000020595) #17	G6PD (ENSECAG00000014994) #18	FAM3A (ENSECAG00000013840) #19	SLC10A3 (ENSECAG00000013796) #20	UBL4A (ENSECAG00000013506) #21	LAGE3 (ENSECAG00000038130) #22	PLXNA3 (ENSECAG00000025088) #23	FAM50A (ENSECAG00000023594) #24	GDI1 (ENSECAG00000017687) #25	ATP6AP1 (ENSECAG00000014216) #26	TAFAZZIN (ENSECAG00000010872) #27	DNASE1L1 (ENSECAG00000003758) #28	RPL10 (ENSECAG00000017154) #29	FLNA (ENSECAG00000009550) #31
Chiroptera	ANCESTRAL SPECIES	48	ENSGT00390000000360.r.d	ENSGT00390000000360.r.c.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.a ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.a ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES		VBP1 (ENSRFEG00010000140)	ENSRFEG00010000146	BRCC3 (ENSRFEG00010000187)	MTCP1 (ENSRFEG00010000401)	FUNDC2 (ENSRFEG00010002186)	F8 (ENSRFEG00010002258)	ENSRFEG00010002358	ENSRFEG00010002379	SMIM9 (ENSRFEG00010002415)	MPP1 (ENSRFEG00010002502)	DKC1 (ENSRFEG00010002621)	GAB3 (ENSRFEG00010002752)	ENSRFEG00010002860 ##22	ENSRFEG00010002889	ENSRFEG00010002921	ENSRFEG00010002963 ##22	ENSRFEG00010002995 ##22	IKBKG (ENSRFEG00010003030) #17	G6PD (ENSRFEG00010003111) #18	FAM3A (ENSRFEG00010003196) #19	SLC10A3 (ENSRFEG00010003285) #20	UBL4A (ENSRFEG00010003315) #21	LAGE3 (ENSRFEG00010003340) #22	PLXNA3 (ENSRFEG00010003374) #23	FAM50A (ENSRFEG00010003417) #24	GDI1 (ENSRFEG00010003480) #25	ATP6AP1 (ENSRFEG00010003617) #26	TAZ (ENSRFEG00010003720) #27	BT_m006_jsm59FD5r (ENSRFEG00010003791) #28	RPL10 (ENSRFEG00010003909) ##29	EMD (ENSRFEG00010004008) #30
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010000146	BRCC3 (ENSRFEG00010000187)	MTCP1 (ENSRFEG00010000401)	FUNDC2 (ENSRFEG00010002186)	F8 (ENSRFEG00010002258)	ENSRFEG00010002358	ENSRFEG00010002379	SMIM9 (ENSRFEG00010002415)	MPP1 (ENSRFEG00010002502)	DKC1 (ENSRFEG00010002621)	GAB3 (ENSRFEG00010002752)	ENSRFEG00010002860 ##22	ENSRFEG00010002889	ENSRFEG00010002921	ENSRFEG00010002963 ##22	ENSRFEG00010002995 ##22	IKBKG (ENSRFEG00010003030) #17	G6PD (ENSRFEG00010003111) #18	FAM3A (ENSRFEG00010003196) #19	SLC10A3 (ENSRFEG00010003285) #20	UBL4A (ENSRFEG00010003315) #21	LAGE3 (ENSRFEG00010003340) #22	PLXNA3 (ENSRFEG00010003374) #23	FAM50A (ENSRFEG00010003417) #24	GDI1 (ENSRFEG00010003480) #25	ATP6AP1 (ENSRFEG00010003617) #26	TAZ (ENSRFEG00010003720) #27	BT_m006_jsm59FD5r (ENSRFEG00010003791) #28	RPL10 (ENSRFEG00010003909) ##29	EMD (ENSRFEG00010004008) #30	FLNA (ENSRFEG00010004101) #31
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.b	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519
Primates	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b ##22
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b ##22
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b ##22
Mouse lemur	MODERN SPECIES	169	FLNA (ENSMICG00000004663) #31	EMD (ENSMICG00000004682) #30	ENSMICG00000033705 ##29	DNASE1L1 (ENSMICG00000035242) #28	TAFAZZIN (ENSMICG00000030766) #27	ATP6AP1 (ENSMICG00000016405) #26	GDI1 (ENSMICG00000016418) #25	FAM50A (ENSMICG00000016428) #24	PLXNA3 (ENSMICG00000016439) #23	UBL4A (ENSMICG00000016459) #21	SLC10A3 (ENSMICG00000016468) #20	FAM3A (ENSMICG00000016470) #19	G6PD (ENSMICG00000016481) #18	IKBKG (ENSMICG00000035937) #17	ENSMICG00000031449	ENSMICG00000041505 ##22	ENSMICG00000028378	ENSMICG00000045052	ENSMICG00000043299	ENSMICG00000044078	ENSMICG00000043090	CXorf66 (ENSMICG00000042583)	ATP11C (ENSMICG00000017620)	ENSMICG00000037295	MCF2 (ENSMICG00000016443)	F9 (ENSMICG00000016427)	ENSMICG00000033041	ENSMICG00000027784	ENSMICG00000028954	ENSMICG00000005523	ENSMICG00000006392
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00950000183068.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Glires	ANCESTRAL SPECIES	10	ENSGT00950000183068.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Rodentia	ANCESTRAL SPECIES	10	ENSGT00950000183068.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Muroidea_A	DUPLICATION
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00530000063582.a	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Murinae	ANCESTRAL SPECIES	14	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT00390000016992	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Mus	ANCESTRAL SPECIES	9	ENSGT00390000005717.e.b.b.b	ENSGT00950000183097.a.a.a	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Mus_B	ANCESTRAL SPECIES	14	ENSGT00950000183097.a.a.a	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b.o.a	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Mouse	DUPLICATION
Mouse	MODERN SPECIES	37	Vbp1 (ENSMUSG00000031197)	Brcc3 (ENSMUSG00000031201)	Mtcp1 (ENSMUSG00000031200)	Cmc4 (ENSMUSG00000090110)	Fundc2 (ENSMUSG00000031198)	F8 (ENSMUSG00000031196)	Smim9 (ENSMUSG00000073094)	Mpp1 (ENSMUSG00000031402)	Dkc1 (ENSMUSG00000031403)	Gab3 (ENSMUSG00000032750)	Pwwp4d (ENSMUSG00000079531)	Ctag2l2 (ENSMUSG00000079532) ##22	Pwwp4c (ENSMUSG00000079534)	Or13ae2 (ENSMUSG00000051706)	Or7r1 (ENSMUSG00000043715)	Ctag2l1 (ENSMUSG00000079536) ##22	G6pdx (ENSMUSG00000031400) #18	Ikbkg (ENSMUSG00000004221) #17	Fam3a (ENSMUSG00000031399) #19	Slc10a3 (ENSMUSG00000032806) #20	Ubl4a (ENSMUSG00000015290) #21	Lage3 (ENSMUSG00000015289) #22	Plxna3 (ENSMUSG00000031398) #23	Fam50a (ENSMUSG00000001962) #24	Gdi1 (ENSMUSG00000015291) #25	Atp6ap1 (ENSMUSG00000019087) #26	Tafazzin (ENSMUSG00000009995) #27	Dnase1l1 (ENSMUSG00000019088) #28	Rpl10 (ENSMUSG00000008682) #29	Emd (ENSMUSG00000001964) #30	Flna (ENSMUSG00000031328) #31
Mouse	MODERN SPECIES	37	Tafazzin (ENSMUSG00000009995) #27	Atp6ap1 (ENSMUSG00000019087) #26	Gdi1 (ENSMUSG00000015291) #25	Fam50a (ENSMUSG00000001962) #24	Plxna3 (ENSMUSG00000031398) #23	Lage3 (ENSMUSG00000015289) #22	Ubl4a (ENSMUSG00000015290) #21	Slc10a3 (ENSMUSG00000032806) #20	Fam3a (ENSMUSG00000031399) #19	Ikbkg (ENSMUSG00000004221) #17	G6pdx (ENSMUSG00000031400) #18	Ctag2l1 (ENSMUSG00000079536) ##22	Or7r1 (ENSMUSG00000043715)	Or13ae2 (ENSMUSG00000051706)	Pwwp4c (ENSMUSG00000079534)	Ctag2l2 (ENSMUSG00000079532) ##22	Pwwp4d (ENSMUSG00000079531)	Gab3 (ENSMUSG00000032750)	Dkc1 (ENSMUSG00000031403)	Mpp1 (ENSMUSG00000031402)	Smim9 (ENSMUSG00000073094)	F8 (ENSMUSG00000031196)	Fundc2 (ENSMUSG00000031198)	Cmc4 (ENSMUSG00000090110)	Mtcp1 (ENSMUSG00000031200)	Brcc3 (ENSMUSG00000031201)	Vbp1 (ENSMUSG00000031197)	Rab39b (ENSMUSG00000031202)	Pls3 (ENSMUSG00000016382)	Cldn34b3 (ENSMUSG00000071738)	Cldn34b4 (ENSMUSG00000073085)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00390000005717.e.b.b.b	ENSGT00390000005717.e.b.b.a.e.a	ENSGT00950000183097.a.a.a	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.o #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
spretus	DUPLICATION
spretus	MODERN SPECIES	19	Pls3 (MGP_SPRETEiJ_G0034361)	Rab39b (MGP_SPRETEiJ_G0034360)	Vbp1 (MGP_SPRETEiJ_G0034359)	Brcc3 (MGP_SPRETEiJ_G0034358)	Mtcp1 (MGP_SPRETEiJ_G0034357)	Cmc4 (MGP_SPRETEiJ_G0034356)	Fundc2 (MGP_SPRETEiJ_G0034355)	F8 (MGP_SPRETEiJ_G0034354)	Smim9 (MGP_SPRETEiJ_G0034353)	Mpp1 (MGP_SPRETEiJ_G0034352)	Dkc1 (MGP_SPRETEiJ_G0034351)	MGP_SPRETEiJ_G0034348 ##22	MGP_SPRETEiJ_G0034347	Or13ae2 (MGP_SPRETEiJ_G0034346)	Or7r1 (MGP_SPRETEiJ_G0034345)	MGP_SPRETEiJ_G0034344 ##22	G6pdx (MGP_SPRETEiJ_G0034343) #18	Ikbkg (MGP_SPRETEiJ_G0034342) #17	Fam3a (MGP_SPRETEiJ_G0034341) #19	Slc10a3 (MGP_SPRETEiJ_G0034340) #20	Ubl4a (MGP_SPRETEiJ_G0034339) #21	Lage3 (MGP_SPRETEiJ_G0034338) #22	Plxna3 (MGP_SPRETEiJ_G0034337) #23	Fam50a (MGP_SPRETEiJ_G0034336) #24	Gdi1 (MGP_SPRETEiJ_G0034335) #25	Atp6ap1 (MGP_SPRETEiJ_G0034334) #26	Tafazzin (MGP_SPRETEiJ_G0034333) #27	Dnase1l1 (MGP_SPRETEiJ_G0034332) #28	MGP_SPRETEiJ_G0034331 ##29	Emd (MGP_SPRETEiJ_G0034330) #30	Flna (MGP_SPRETEiJ_G0034329) #31
spretus	MODERN SPECIES	19	Tafazzin (MGP_SPRETEiJ_G0034333) #27	Atp6ap1 (MGP_SPRETEiJ_G0034334) #26	Gdi1 (MGP_SPRETEiJ_G0034335) #25	Fam50a (MGP_SPRETEiJ_G0034336) #24	Plxna3 (MGP_SPRETEiJ_G0034337) #23	Lage3 (MGP_SPRETEiJ_G0034338) #22	Ubl4a (MGP_SPRETEiJ_G0034339) #21	Slc10a3 (MGP_SPRETEiJ_G0034340) #20	Fam3a (MGP_SPRETEiJ_G0034341) #19	Ikbkg (MGP_SPRETEiJ_G0034342) #17	G6pdx (MGP_SPRETEiJ_G0034343) #18	MGP_SPRETEiJ_G0034344 ##22	Or7r1 (MGP_SPRETEiJ_G0034345)	Or13ae2 (MGP_SPRETEiJ_G0034346)	MGP_SPRETEiJ_G0034347	MGP_SPRETEiJ_G0034348 ##22	Dkc1 (MGP_SPRETEiJ_G0034351)	Mpp1 (MGP_SPRETEiJ_G0034352)	Smim9 (MGP_SPRETEiJ_G0034353)	F8 (MGP_SPRETEiJ_G0034354)	Fundc2 (MGP_SPRETEiJ_G0034355)	Cmc4 (MGP_SPRETEiJ_G0034356)	Mtcp1 (MGP_SPRETEiJ_G0034357)	Brcc3 (MGP_SPRETEiJ_G0034358)	Vbp1 (MGP_SPRETEiJ_G0034359)	Rab39b (MGP_SPRETEiJ_G0034360)	Pls3 (MGP_SPRETEiJ_G0034361)	MGP_SPRETEiJ_G0034362	MGP_SPRETEiJ_G0034363	MGP_SPRETEiJ_G0034364	Cldn34b4 (MGP_SPRETEiJ_G0034365)
Rat	MODERN SPECIES	46													ENSRNOG00000067246	LOC120099253 (ENSRNOG00000061511) ##22	Or7r1 (ENSRNOG00000058820)	LOC690348 (ENSRNOG00000060839) ##22	Ikbkg (ENSRNOG00000060936) #17	G6pd (ENSRNOG00000056728) #18	Fam3a (ENSRNOG00000060623) #19	Ubl4a (ENSRNOG00000053061) #21	Slc10a3 (ENSRNOG00000060580) #20	Lage3 (ENSRNOG00000053456)	Plxna3 (ENSRNOG00000060464) #23	Fam50a (ENSRNOG00000058439) #24	Gdi1 (ENSRNOG00000056870) #25	Atp6ap1 (ENSRNOG00000054352) #26	Tafazzin (ENSRNOG00000053023) #27	ENSRNOG00000063225	Dnase1l1 (ENSRNOG00000055641) #28	Rpl10 (ENSRNOG00000056765) ##29	Emd (ENSRNOG00000058882) #30
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00530000063582.a	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00530000063582.a	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00410000025802.g.b.q.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000029793	Rab39b (ENSPEMG00000029552)	Vbp1 (ENSPEMG00000004677)	Brcc3 (ENSPEMG00000014353)	Mtcp1 (ENSPEMG00000030977)	Cmc4 (ENSPEMG00000024388)	ENSPEMG00000026725	F8 (ENSPEMG00000014119)	Smim9 (ENSPEMG00000010945)	Mpp1 (ENSPEMG00000014261)	ENSPEMG00000022395	Dkc1 (ENSPEMG00000013348)	Gab3 (ENSPEMG00000012634)	Or13ae2 (ENSPEMG00000025767)	Or7r1 (ENSPEMG00000009130)	ENSPEMG00000026245 ##22	ENSPEMG00000027888 ##22	ENSPEMG00000029875 ##22	Ikbkg (ENSPEMG00000031110) #17	ENSPEMG00000017532 #18	Fam3a (ENSPEMG00000004757) #19	Ubl4a (ENSPEMG00000027881) #21	Lage3 (ENSPEMG00000011229) #22	Plxna3 (ENSPEMG00000012781) #23	Fam50a (ENSPEMG00000001727) #24	Gdi1 (ENSPEMG00000010952) #25	Atp6ap1 (ENSPEMG00000009724) #26	Tafazzin (ENSPEMG00000007822) #27	Dnase1l1 (ENSPEMG00000013008) #28	ENSPEMG00000015703 ##29	Emd (ENSPEMG00000012081) #30
Northern American deer mouse	MODERN SPECIES	475	Vbp1 (ENSPEMG00000004677)	Brcc3 (ENSPEMG00000014353)	Mtcp1 (ENSPEMG00000030977)	Cmc4 (ENSPEMG00000024388)	ENSPEMG00000026725	F8 (ENSPEMG00000014119)	Smim9 (ENSPEMG00000010945)	Mpp1 (ENSPEMG00000014261)	ENSPEMG00000022395	Dkc1 (ENSPEMG00000013348)	Gab3 (ENSPEMG00000012634)	Or13ae2 (ENSPEMG00000025767)	Or7r1 (ENSPEMG00000009130)	ENSPEMG00000026245 ##22	ENSPEMG00000027888 ##22	ENSPEMG00000029875 ##22	Ikbkg (ENSPEMG00000031110) #17	ENSPEMG00000017532 #18	Fam3a (ENSPEMG00000004757) #19	Ubl4a (ENSPEMG00000027881) #21	Lage3 (ENSPEMG00000011229) #22	Plxna3 (ENSPEMG00000012781) #23	Fam50a (ENSPEMG00000001727) #24	Gdi1 (ENSPEMG00000010952) #25	Atp6ap1 (ENSPEMG00000009724) #26	Tafazzin (ENSPEMG00000007822) #27	Dnase1l1 (ENSPEMG00000013008) #28	ENSPEMG00000015703 ##29	Emd (ENSPEMG00000012081) #30	Flna (ENSPEMG00000009562) #31	Tktl1 (ENSPEMG00000012644) #32
Prairie vole	MODERN SPECIES	168	ENSMOCG00000003592	ENSMOCG00000012583	Rab39b (ENSMOCG00000006994)	Vbp1 (ENSMOCG00000013440)	ENSMOCG00000000841	Cmc4 (ENSMOCG00000019858)	Mtcp1 (ENSMOCG00000002450)	Fundc2 (ENSMOCG00000013641)	F8 (ENSMOCG00000006178)	ENSMOCG00000001114	Smim9 (ENSMOCG00000003619)	Mpp1 (ENSMOCG00000000082)	ENSMOCG00000001169	Gab3 (ENSMOCG00000015626)	Or7r1 (ENSMOCG00000002349)	ENSMOCG00000017711 ##22	Ikbkg (ENSMOCG00000011244) #17	ENSMOCG00000015421 #18	Fam3a (ENSMOCG00000016025) #19	Slc10a3 (ENSMOCG00000008789) #20	Ubl4a (ENSMOCG00000000785) #21	ENSMOCG00000002473 #22	Plxna3 (ENSMOCG00000002375) #23	Fam50a (ENSMOCG00000015890) #24	Gdi1 (ENSMOCG00000006575) #25	Atp6ap1 (ENSMOCG00000001026) #26	Tafazzin (ENSMOCG00000010108) #27	Dnase1l1 (ENSMOCG00000017402) #28	ENSMOCG00000013831 ##29	Emd (ENSMOCG00000003977) #30	Flna (ENSMOCG00000007826) #31
Cricetinae	ANCESTRAL SPECIES	46	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f.db.b	ENSGT00390000012647.d	ENSGT00390000006885.a	ENSGT00390000000360.r.b.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00530000063582.a	ENSGT00950000183055.a.b	ENSGT00510000047733
Golden Hamster	MODERN SPECIES	417																ENSMAUG00000010290 ##22
Chinese hamster chok1gshd	MODERN SPECIES	16	Emd (ENSCGRG00001023962) #30	ENSCGRG00001008387 ##29	DNASE1L1 (ENSCGRG00001019882) #28	TAZ (ENSCGRG00001016189) #27	Atp6ap1 (ENSCGRG00001015351) #26	Gdi1 (ENSCGRG00001020747) #25	Fam50a (ENSCGRG00001022147) #24	Plxna3 (ENSCGRG00001018950) #23	Lage3 (ENSCGRG00001006943) #22	Ubl4a (ENSCGRG00001024649) #21	Fam3a (ENSCGRG00001017590) #19	G6PDH (ENSCGRG00001009805) #18	Ikbkg (ENSCGRG00001023852) #17	Or7r1 (ENSCGRG00001002331)	ENSCGRG00001018213	ENSCGRG00001000852 ##22	Gab3 (ENSCGRG00001024780)	ENSCGRG00001014574	Mpp1 (ENSCGRG00001000334)	Smim9 (ENSCGRG00001020847)	F8 (ENSCGRG00001018172)	Fundc2 (ENSCGRG00001005074)	Cmc4 (ENSCGRG00001024106)	Mtcp1 (ENSCGRG00001021448)	Brcc3 (ENSCGRG00001000059)	ENSCGRG00001012855	Rab39b (ENSCGRG00001022502)	ENSCGRG00001011867	ENSCGRG00001004214	ENSCGRG00001005752
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00950000183189.a.b.b	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00940000161825	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00700000106038.A	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00950000183189.a.b.b	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT01050000246733
Northern American deer mouse	MODERN SPECIES	475	Prrg3 (ENSPEMG00000023422)	Vma21 (ENSPEMG00000031324)	Gpr50 (ENSPEMG00000017264)	Cd99l2 (ENSPEMG00000013252)	Mtmr1 (ENSPEMG00000015094)	Mtm1 (ENSPEMG00000002415)	Mamld1 (ENSPEMG00000013693)	ENSPEMG00000028824	ENSPEMG00000027461	Tmem185a (ENSPEMG00000011308)	Eola1 (ENSPEMG00000019988)	Ids (ENSPEMG00000026219)	ENSPEMG00000026512	Aff2 (ENSPEMG00000019376)	ENSPEMG00000028010	Ctag2 (ENSPEMG00000023674) ##22	Slitrk2 (ENSPEMG00000016076)	4930447F04Rik (ENSPEMG00000016043)	Slitrk4 (ENSPEMG00000016839)	Magea9 (ENSPEMG00000024116)	Gm6760 (ENSPEMG00000013903)	ENSPEMG00000024166	ENSPEMG00000021044	Magec2 (ENSPEMG00000020864)	ENSPEMG00000026579	ENSPEMG00000031332	ENSPEMG00000024934	ENSPEMG00000023481	ENSPEMG00000029307	Sox3 (ENSPEMG00000023890)	Gm715 (ENSPEMG00000025763)
Prairie vole	MODERN SPECIES	360	Fgf13 (ENSMOCG00000000865)	F9 (ENSMOCG00000010515)	Mcf2 (ENSMOCG00000007145)	ENSMOCG00000007642	Atp11c (ENSMOCG00000002605)	ENSMOCG00000012975	Gm7073 (ENSMOCG00000018667)	Sox3 (ENSMOCG00000009062)	ENSMOCG00000013955	Ldoc1 (ENSMOCG00000008324)	ENSMOCG00000006967	Magec2 (ENSMOCG00000016294)	ENSMOCG00000017215	Slitrk4 (ENSMOCG00000008180)	ENSMOCG00000014952	Ctag2 (ENSMOCG00000017014) ##22	ENSMOCG00000015005	Phka1 (ENSMOCG00000013482)	Hdac8 (ENSMOCG00000019902)	Cited1 (ENSMOCG00000013938)	ENSMOCG00000014451	Ercc6l (ENSMOCG00000021344)	ENSMOCG00000000929	Nhsl2 (ENSMOCG00000002880)	Rtl5 (ENSMOCG00000000142)	Cxcr3 (ENSMOCG00000007041)	Ogt (ENSMOCG00000013563)	Taf1 (ENSMOCG00000001297)	Itgb1bp2 (ENSMOCG00000021266)	ENSMOCG00000005532	Zmym3 (ENSMOCG00000007682)
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00950000183189.a.b.b	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00940000161825	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515
Chinese hamster chok1gshd	MODERN SPECIES	16	Zic3 (ENSCGRG00001024527)	ENSCGRG00001018083	Magea13 (ENSCGRG00001010626)	Fgf13 (ENSCGRG00001014336)	ENSCGRG00001017965	F9 (ENSCGRG00001015312)	Mcf2 (ENSCGRG00001021302)	Atp11c (ENSCGRG00001020356)	Gm7073 (ENSCGRG00001022592)	Sox3 (ENSCGRG00001011737)	Ldoc1 (ENSCGRG00001009400)	Magec2 (ENSCGRG00001021825)	Gm6760 (ENSCGRG00001016891)	Magea9 (ENSCGRG00001005254)	Slitrk4 (ENSCGRG00001005530)	Ctag2 (ENSCGRG00001024950) ##22	4930447F04Rik (ENSCGRG00001021811)	Slitrk2 (ENSCGRG00001010877)	ENSCGRG00001016997	ENSCGRG00001000104	ENSCGRG00001021550	Fmr1 (ENSCGRG00001012567)	Aff2 (ENSCGRG00001012965)	Ids (ENSCGRG00001002360)	Eola1 (ENSCGRG00001014157)	Tmem185a (ENSCGRG00001025064)	ENSCGRG00001018034	ENSCGRG00001013662	Mamld1 (ENSCGRG00001000251)	Mtm1 (ENSCGRG00001024851)	Mtmr1 (ENSCGRG00001000727)
Golden Hamster	MODERN SPECIES	847															ENSMAUG00000000080	Ctag2 (ENSMAUG00000000072) ##22	4930447F04Rik (ENSMAUG00000000069)	Slitrk2 (ENSMAUG00000000060)
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00940000165847	ENSGT00800000125275	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Mus	ANCESTRAL SPECIES	9	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182.lb	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Mouse	MODERN SPECIES	37	Gpr101 (ENSMUSG00000036357)	Zic3 (ENSMUSG00000067860)	Magea13 (ENSMUSG00000046180)	Fgf13 (ENSMUSG00000031137)	F9 (ENSMUSG00000031138)	Mcf2 (ENSMUSG00000031139)	Atp11c (ENSMUSG00000062949)	Gm7073 (ENSMUSG00000079583)	Gm715 (ENSMUSG00000082226)	Sox3 (ENSMUSG00000045179)	Ldoc1 (ENSMUSG00000057615)	Magec2 (ENSMUSG00000045330)	Gm6760 (ENSMUSG00000079579)	Magea9 (ENSMUSG00000031179)	Slitrk4 (ENSMUSG00000046699)	Ctag2 (ENSMUSG00000031181) ##22	4930447F04Rik (ENSMUSG00000031182)	Slitrk2 (ENSMUSG00000036790)	Gm1140 (ENSMUSG00000079578)	Gm14692 (ENSMUSG00000079577)	4933436I01Rik (ENSMUSG00000025288)	Fmr1 (ENSMUSG00000000838)	Fmr1nb (ENSMUSG00000062170)	Styx-ps (ENSMUSG00000071748)	Aff2 (ENSMUSG00000031189)	1700020N15Rik (ENSMUSG00000059690)	Ids (ENSMUSG00000035847)	Eola1 (ENSMUSG00000045237)	Tmem185a (ENSMUSG00000073139)	Mamld1 (ENSMUSG00000059401)	Mtm1 (ENSMUSG00000031337)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b ##22	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b
Steppe mouse	MODERN SPECIES	1860																Ctag2 (ENSMSIG00000004602) ##22
spretus	MODERN SPECIES	19	Gpr101 (MGP_SPRETEiJ_G0034255)	Zic3 (MGP_SPRETEiJ_G0034256)	Magea13 (MGP_SPRETEiJ_G0034257)	Fgf13 (MGP_SPRETEiJ_G0034258)	F9 (MGP_SPRETEiJ_G0034259)	Mcf2 (MGP_SPRETEiJ_G0034260)	Atp11c (MGP_SPRETEiJ_G0034261)	Gm7073 (MGP_SPRETEiJ_G0034262)	Sox3 (MGP_SPRETEiJ_G0034263)	Ldoc1 (MGP_SPRETEiJ_G0034264)	Magec2 (MGP_SPRETEiJ_G0034265)	MGP_SPRETEiJ_G0034266	Gm6760 (MGP_SPRETEiJ_G0034267)	Magea9 (MGP_SPRETEiJ_G0034268)	Slitrk4 (MGP_SPRETEiJ_G0034269)	Ctag2 (MGP_SPRETEiJ_G0034270) ##22	4930447F04Rik (MGP_SPRETEiJ_G0034271)	Slitrk2 (MGP_SPRETEiJ_G0034272)	MGP_SPRETEiJ_G0034273	4933436I01Rik (MGP_SPRETEiJ_G0034274)	Fmr1 (MGP_SPRETEiJ_G0034275)	Fmr1nb (MGP_SPRETEiJ_G0034276)	1700020N15Rik (MGP_SPRETEiJ_G0034277)	Aff2 (MGP_SPRETEiJ_G0034278)	Ids (MGP_SPRETEiJ_G0034279)	Tmem185a (MGP_SPRETEiJ_G0034280)	Mamld1 (MGP_SPRETEiJ_G0034281)	Mtm1 (MGP_SPRETEiJ_G0034282)	Mtmr1 (MGP_SPRETEiJ_G0034283)	Cd99l2 (MGP_SPRETEiJ_G0034284)	Gpr50 (MGP_SPRETEiJ_G0034285)
Ryukyu mouse	MODERN SPECIES	19	MGP_CAROLIEiJ_G0033102	Magea13 (MGP_CAROLIEiJ_G0033103)	Fgf13 (MGP_CAROLIEiJ_G0033104)	F9 (MGP_CAROLIEiJ_G0033105)	Mcf2 (MGP_CAROLIEiJ_G0033106)	Atp11c (MGP_CAROLIEiJ_G0033107)	Gm7073 (MGP_CAROLIEiJ_G0033108)	Sox3 (MGP_CAROLIEiJ_G0033109)	MGP_CAROLIEiJ_G0033110	Ldoc1 (MGP_CAROLIEiJ_G0033111)	Magec2 (MGP_CAROLIEiJ_G0033112)	MGP_CAROLIEiJ_G0033113	Gm6760 (MGP_CAROLIEiJ_G0033114)	Magea9 (MGP_CAROLIEiJ_G0033115)	Slitrk4 (MGP_CAROLIEiJ_G0033116)	Ctag2 (MGP_CAROLIEiJ_G0033117) ##22	4930447F04Rik (MGP_CAROLIEiJ_G0033118)	Slitrk2 (MGP_CAROLIEiJ_G0033119)	4933436I01Rik (MGP_CAROLIEiJ_G0033120)	Fmr1 (MGP_CAROLIEiJ_G0033121)	Fmr1nb (MGP_CAROLIEiJ_G0033122)	Aff2 (MGP_CAROLIEiJ_G0033123)	1700020N15Rik (MGP_CAROLIEiJ_G0033124)	Ids (MGP_CAROLIEiJ_G0033125)	Eola1 (MGP_CAROLIEiJ_G0033126)	Tmem185a (MGP_CAROLIEiJ_G0033127)	Mtm1 (MGP_CAROLIEiJ_G0033128)	Mamld1 (MGP_CAROLIEiJ_G0033129)	Mtmr1 (MGP_CAROLIEiJ_G0033130)	Cd99l2 (MGP_CAROLIEiJ_G0033131)	Gpr50 (MGP_CAROLIEiJ_G0033132)
Shrew mouse	MODERN SPECIES	23	Gpr101 (MGP_PahariEiJ_G0031643)	Zic3 (MGP_PahariEiJ_G0031644)	Magea13 (MGP_PahariEiJ_G0031645)	Fgf13 (MGP_PahariEiJ_G0031646)	F9 (MGP_PahariEiJ_G0031647)	MGP_PahariEiJ_G0031648	Atp11c (MGP_PahariEiJ_G0031649)	Gm7073 (MGP_PahariEiJ_G0031650)	Sox3 (MGP_PahariEiJ_G0031651)	Ldoc1 (MGP_PahariEiJ_G0031652)	Magec2 (MGP_PahariEiJ_G0031653)	MGP_PahariEiJ_G0031654	Gm6760 (MGP_PahariEiJ_G0031655)	Magea9 (MGP_PahariEiJ_G0031656)	Slitrk4 (MGP_PahariEiJ_G0031657)	Ctag2 (MGP_PahariEiJ_G0031658) ##22	4930447F04Rik (MGP_PahariEiJ_G0031659)	Slitrk2 (MGP_PahariEiJ_G0031660)	MGP_PahariEiJ_G0031661	MGP_PahariEiJ_G0031662	Fmr1 (MGP_PahariEiJ_G0031663)	MGP_PahariEiJ_G0031664	MGP_PahariEiJ_G0031665	Aff2 (MGP_PahariEiJ_G0031666)	Ids (MGP_PahariEiJ_G0031667)	Eola1 (MGP_PahariEiJ_G0031668)	Tmem185a (MGP_PahariEiJ_G0031669)	Mamld1 (MGP_PahariEiJ_G0031670)	Mtm1 (MGP_PahariEiJ_G0031671)	Mtmr1 (MGP_PahariEiJ_G0031672)	Cd99l2 (MGP_PahariEiJ_G0031673)
Rat	MODERN SPECIES	46	RGD1560585 (ENSRNOG00000070469)	Sox3 (ENSRNOG00000058173)	RGD1561327 (ENSRNOG00000031222)	ENSRNOG00000063675	AABR07041972.1 (ENSRNOG00000058507)	ENSRNOG00000070217	Ldoc1 (ENSRNOG00000003409)	LOC102546596 (ENSRNOG00000049579)	Magec2 (ENSRNOG00000026265)	AABR07041997.1 (ENSRNOG00000026227)	ENSRNOG00000063631	ENSRNOG00000067343	AABR07042071.1 (ENSRNOG00000046097)	Magea9 (ENSRNOG00000023016)	Slitrk4 (ENSRNOG00000062783)	Ctag2 (ENSRNOG00000012560) ##22	AABR07042226.1 (ENSRNOG00000058521)	LOC120099343 (ENSRNOG00000066658)	Slitrk2 (ENSRNOG00000011562)	LOC689396 (ENSRNOG00000032418)	ENSRNOG00000067514	AABR07042293.1 (ENSRNOG00000037381)	LOC100912196 (ENSRNOG00000062315)	Fam9c (ENSRNOG00000069253)	ENSRNOG00000069396	AABR07042418.1 (ENSRNOG00000051726)	Fmr1 (ENSRNOG00000057464)	Fmr1nb (ENSRNOG00000053397)	LOC689600 (ENSRNOG00000067249)	Aff2 (ENSRNOG00000052572)	LOC100360413 (ENSRNOG00000051885)
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b.r ##22
Murinae	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b.r ##22
Rat	DUPLICATION
Rat	MODERN SPECIES	46	Dnase1l1 (ENSRNOG00000055641) #28	ENSRNOG00000063225	Tafazzin (ENSRNOG00000053023) #27	Atp6ap1 (ENSRNOG00000054352) #26	Gdi1 (ENSRNOG00000056870) #25	Fam50a (ENSRNOG00000058439) #24	Plxna3 (ENSRNOG00000060464) #23	Lage3 (ENSRNOG00000053456)	Slc10a3 (ENSRNOG00000060580) #20	Ubl4a (ENSRNOG00000053061) #21	Fam3a (ENSRNOG00000060623) #19	G6pd (ENSRNOG00000056728) #18	Ikbkg (ENSRNOG00000060936) #17	LOC690348 (ENSRNOG00000060839) ##22	Or7r1 (ENSRNOG00000058820)	LOC120099253 (ENSRNOG00000061511) ##22	ENSRNOG00000067246
Rat	MODERN SPECIES	24																LOC102552182 (ENSRNOG00000066963) ##22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b.r ##22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b.r ##22
Northern American deer mouse	MODERN SPECIES	475	Flna (ENSPEMG00000009562) #31	Emd (ENSPEMG00000012081) #30	ENSPEMG00000015703 ##29	Dnase1l1 (ENSPEMG00000013008) #28	Tafazzin (ENSPEMG00000007822) #27	Atp6ap1 (ENSPEMG00000009724) #26	Gdi1 (ENSPEMG00000010952) #25	Fam50a (ENSPEMG00000001727) #24	Plxna3 (ENSPEMG00000012781) #23	Lage3 (ENSPEMG00000011229) #22	Ubl4a (ENSPEMG00000027881) #21	Fam3a (ENSPEMG00000004757) #19	ENSPEMG00000017532 #18	Ikbkg (ENSPEMG00000031110) #17	ENSPEMG00000029875 ##22	ENSPEMG00000027888 ##22	ENSPEMG00000026245 ##22	Or7r1 (ENSPEMG00000009130)	Or13ae2 (ENSPEMG00000025767)	Gab3 (ENSPEMG00000012634)	Dkc1 (ENSPEMG00000013348)	ENSPEMG00000022395	Mpp1 (ENSPEMG00000014261)	Smim9 (ENSPEMG00000010945)	F8 (ENSPEMG00000014119)	ENSPEMG00000026725	Cmc4 (ENSPEMG00000024388)	Mtcp1 (ENSPEMG00000030977)	Brcc3 (ENSPEMG00000014353)	Vbp1 (ENSPEMG00000004677)	Rab39b (ENSPEMG00000029552)
Upper Galilee mountains blind mole rat	MODERN SPECIES	660															Or13ae2 (ENSNGAG00000001537)	ENSNGAG00000024034 ##22	Ikbkg (ENSNGAG00000019535) #17	ENSNGAG00000020668 #18	Fam3a (ENSNGAG00000016683) #19	Slc10a3 (ENSNGAG00000007975) #20	Ubl4a (ENSNGAG00000023782) #21	Lage3 (ENSNGAG00000023293) #22	Plxna3 (ENSNGAG00000022548) #23	ENSNGAG00000012608	Fam50a (ENSNGAG00000021495) #24	Gdi1 (ENSNGAG00000023333) #25	Atp6ap1 (ENSNGAG00000021512) #26	Tafazzin (ENSNGAG00000008680) #27	Dnase1l1 (ENSNGAG00000024155) #28	ENSNGAG00000023746 ##29	Emd (ENSNGAG00000018770) #30
Kangaroo rat	MODERN SPECIES	526	Tktl1 (ENSDORG00000013785) #32	Emd (ENSDORG00000004375) #30	Flna (ENSDORG00000004370) #31	ENSDORG00000004369 ##29	Tafazzin (ENSDORG00000029677) #27	Atp6ap1 (ENSDORG00000008847) #26	Gdi1 (ENSDORG00000008848) #25	Fam50a (ENSDORG00000008851) #24	Plxna3 (ENSDORG00000000853) #23	Lage3 (ENSDORG00000029875) #22	Ubl4a (ENSDORG00000005196) #21	Slc10a3 (ENSDORG00000005197) #20	Fam3a (ENSDORG00000025173) #19	ENSDORG00000012731 #18	Ikbkg (ENSDORG00000028140) #17	ENSDORG00000000625 ##22	Gab3 (ENSDORG00000006809)	ENSDORG00000013566	Mpp1 (ENSDORG00000013568)	ENSDORG00000024019	F8 (ENSDORG00000013155)	ENSDORG00000028874	Fundc2 (ENSDORG00000013156)	Mtcp1 (ENSDORG00000013159)	ENSDORG00000029487	ENSDORG00000013161	ENSDORG00000004628	Rab39b (ENSDORG00000029496)	F8a (ENSDORG00000028723)	ENSDORG00000014658	ENSDORG00000026230
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647.d	ENSGT00390000006885.a	ENSGT00390000000360.r.b	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Sciuridae	ANCESTRAL SPECIES	62																ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647.d	ENSGT00390000006885.a	ENSGT00390000000360.r.b	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Marmotini	ANCESTRAL SPECIES	112																ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00940000160294.x	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000160294.w.a	ENSGT00940000154783.f	ENSGT00390000012647.d	ENSGT00390000006885.a	ENSGT00390000000360.r.b	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Marmotini_b	ANCESTRAL SPECIES	202																ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294.w.b	ENSGT00940000160294.x	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000160294.w.a	ENSGT00940000154783.f.m	ENSGT00390000012647.d	ENSGT00390000006885.a	ENSGT00390000000360.r.b	ENSGT00950000183068.a.a	ENSGT00390000018904
Squirrel	MODERN SPECIES	519																ENSSTOG00000031419 ##22	GAB3 (ENSSTOG00000001065)	ENSSTOG00000001074	MPP1 (ENSSTOG00000001078)	F8 (ENSSTOG00000023387)	ENSSTOG00000032258	ENSSTOG00000020699	ENSSTOG00000007801	CMC4 (ENSSTOG00000025729)	MTCP1 (ENSSTOG00000034563)	BRCC3 (ENSSTOG00000019781)	VBP1 (ENSSTOG00000006684)	RAB39B (ENSSTOG00000011237)	CLIC2 (ENSSTOG00000025815)
Arctic ground squirrel	MODERN SPECIES	823	DNASE1L1 (ENSUPAG00010000232) #28	TAFAZZIN (ENSUPAG00010000055) #27	ATP6AP1 (ENSUPAG00010011086) #26	GDI1 (ENSUPAG00010011085) #25	ENSUPAG00010011078 #24	PLXNA3 (ENSUPAG00010011001) #23	ENSUPAG00010010993	ENSUPAG00010010991 #22	SLC10A3 (ENSUPAG00010010974) #20	FAM3A (ENSUPAG00010010917) #19	IKBKG (ENSUPAG00010010819) #17	ENSUPAG00010010808	ENSUPAG00010010804	ENSUPAG00010010787	ENSUPAG00010010780 ##22	ENSUPAG00010010746 ##22
Alpin marmot	MODERN SPECIES	497																ENSMMMG00000000541 ##22
Tree shrew	MODERN SPECIES	9803																ENSTBEG00000014136 ##22
Atlantogenata	ANCESTRAL SPECIES	239															ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238
Afrotheria	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b ##22
Tenrec	MODERN SPECIES	9826																ENSETEG00000019583 ##22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00410000025802.g.b ##22
Hyrax	MODERN SPECIES	8203																ENSPCAG00000001014 ##22
Xenarthra	ANCESTRAL SPECIES	1582															ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3707															ENSDNOG00000045455	ENSDNOG00000035915 ##22
Armadillo	MODERN SPECIES	2569															ENSDNOG00000038015	ENSDNOG00000034554 ##22	ENSDNOG00000039456	ENSDNOG00000044379
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	190																ENSDNOG00000008974 ##22
Armadillo	MODERN SPECIES	4443																ENSDNOG00000019625 ##22	ENSDNOG00000003700
Armadillo	MODERN SPECIES	2680																ENSDNOG00000044741 ##22
Armadillo	MODERN SPECIES	2585														ENSDNOG00000000533	ENSDNOG00000036601	ENSDNOG00000044697 ##22
Armadillo	MODERN SPECIES	3402												ENSDNOG00000032006	ENSDNOG00000019723	ENSDNOG00000034411	ENSDNOG00000031615	ENSDNOG00000042185 ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00410000025802.h ##22
Atlantogenata	ANCESTRAL SPECIES	70	ENSGT00390000012647	ENSGT00940000154783	ENSGT00940000160294	ENSGT00390000016992	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.h ##22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Afrotheria	ANCESTRAL SPECIES	82	ENSGT00390000012647	ENSGT00940000154783	ENSGT00940000160294	ENSGT00390000016992	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.h ##22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.a ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00940000162426 #32	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Tenrec	MODERN SPECIES	6100																ENSETEG00000002563 ##22	FAM3A (ENSETEG00000002560) #19
Afrotheria_a	ANCESTRAL SPECIES	81	ENSGT00390000012647	ENSGT00940000154783	ENSGT00940000160294	ENSGT00390000016992	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.h ##22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.a ##29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37	ENSGT00940000161383
Hyrax	MODERN SPECIES	5854													FAM3A (ENSPCAG00000016197) #19	SLC10A3 (ENSPCAG00000016167) #20	ENSPCAG00000016095 #21	ENSPCAG00000016044 ##22	PLXNA3 (ENSPCAG00000015846) #23	ENSPCAG00000015755 ##24	GDI1 (ENSPCAG00000015676) #25	ATP6AP1 (ENSPCAG00000015619) #26
Elephant	MODERN SPECIES	50	CMC4 (ENSLAFG00000020599)	ENSLAFG00000015289	F8 (ENSLAFG00000015274)	ENSLAFG00000003610	SMIM9 (ENSLAFG00000032056)	MPP1 (ENSLAFG00000011928)	DKC1 (ENSLAFG00000000221)	GAB3 (ENSLAFG00000001708)	ENSLAFG00000028603	ENSLAFG00000010146	IKBKG (ENSLAFG00000026529) #17	G6PD (ENSLAFG00000010694) #18	FAM3A (ENSLAFG00000032131) #19	SLC10A3 (ENSLAFG00000011108) #20	UBL4A (ENSLAFG00000022192) #21	ENSLAFG00000016044 ##22	PLXNA3 (ENSLAFG00000031276) #23	ENSLAFG00000008766 ##24	GDI1 (ENSLAFG00000008761) #25	ATP6AP1 (ENSLAFG00000008757) #26	TAFAZZIN (ENSLAFG00000003502) #27	DNASE1L1 (ENSLAFG00000003498) #28	ENSLAFG00000031860 ##29	FLNA (ENSLAFG00000006359) #31	EMD (ENSLAFG00000005993) #30	ENSLAFG00000005145	ENSLAFG00000005142 #33	ENSLAFG00000010311 #34	ENSLAFG00000027266	MECP2 (ENSLAFG00000016292) #35	IRAK1 (ENSLAFG00000016212) #36
Xenarthra	ANCESTRAL SPECIES																	ENSGT00410000025802.h ##22
Armadillo	MODERN SPECIES	1642															CTTN (ENSDNOG00000019508)	ENSDNOG00000048894 ##22	PPFIA1 (ENSDNOG00000005382)	FADD (ENSDNOG00000003249)	ANO1 (ENSDNOG00000042488)	ENSDNOG00000013431	FGF4 (ENSDNOG00000036269)	FGF19 (ENSDNOG00000032646)	ENSDNOG00000012323	CCND1 (ENSDNOG00000041164)
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.b
Primates	ANCESTRAL SPECIES	23	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00390000000360.r.a.b	ENSGT00950000183068.a.a	ENSGT00390000018904
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00940000163020	ENSGT00390000016992	ENSGT00530000063582.a	ENSGT00950000183055.a.b	ENSGT00510000047733	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h.a ##22	ENSGT00410000025802.h.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519	ENSGT00940000158132
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00390000003897.s.b.a.a.b.e.a #29	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.a.b.e.a #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397	ENSGT00940000163020	ENSGT00390000016992
Hominidae	ANCESTRAL SPECIES	8	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.b.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397	ENSGT00940000163020	ENSGT00390000016992
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00390000003897.s.b.a.a.b.e.a #29	ENSGT00530000063687.b.b.b.f #35	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a.i #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.b.a ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00390000018904
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00390000003897.s.b.b ##29	ENSGT00530000063687.b.b.b.f #35	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a.i #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.b.a ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Human	DUPLICATION
Human	MODERN SPECIES	1827	CLIC2 (ENSG00000155962)	RAB39B (ENSG00000155961)	VBP1 (ENSG00000155959)	BRCC3 (ENSG00000185515)	MTCP1 (ENSG00000214827)	CMC4 (ENSG00000182712)	FUNDC2 (ENSG00000165775)	F8A1 (ENSG00000288722)	H2AB1 (ENSG00000274183)	F8 (ENSG00000185010)	SMIM9 (ENSG00000203870)	MPP1 (ENSG00000130830)	DKC1 (ENSG00000130826)	GAB3 (ENSG00000160219)	CTAG2 (ENSG00000126890) ##22	CTAG1B (ENSG00000184033) ##22	CTAG1A (ENSG00000268651) ##22	IKBKG (ENSG00000269335) #17	G6PD (ENSG00000160211) #18	FAM3A (ENSG00000071889) #19	SLC10A3 (ENSG00000126903) #20	UBL4A (ENSG00000102178) #21	LAGE3 (ENSG00000196976) #22	PLXNA3 (ENSG00000130827) #23	FAM50A (ENSG00000071859) #24	GDI1 (ENSG00000203879) #25	ATP6AP1 (ENSG00000071553) #26	TAFAZZIN (ENSG00000102125) #27	DNASE1L1 (ENSG00000013563) #28	RPL10 (ENSG00000147403) ##29	EMD (ENSG00000102119) #30
Human	MODERN SPECIES	1827	FLNA (ENSG00000196924) #31	EMD (ENSG00000102119) #30	RPL10 (ENSG00000147403) ##29	DNASE1L1 (ENSG00000013563) #28	TAFAZZIN (ENSG00000102125) #27	ATP6AP1 (ENSG00000071553) #26	GDI1 (ENSG00000203879) #25	FAM50A (ENSG00000071859) #24	PLXNA3 (ENSG00000130827) #23	LAGE3 (ENSG00000196976) #22	UBL4A (ENSG00000102178) #21	SLC10A3 (ENSG00000126903) #20	FAM3A (ENSG00000071889) #19	G6PD (ENSG00000160211) #18	IKBKG (ENSG00000269335) #17	CTAG1A (ENSG00000268651) ##22	CTAG1B (ENSG00000184033) ##22	CTAG2 (ENSG00000126890) ##22	GAB3 (ENSG00000160219)	DKC1 (ENSG00000130826)	MPP1 (ENSG00000130830)	SMIM9 (ENSG00000203870)	F8 (ENSG00000185010)	H2AB1 (ENSG00000274183)	F8A1 (ENSG00000288722)	FUNDC2 (ENSG00000165775)	CMC4 (ENSG00000182712)	MTCP1 (ENSG00000214827)	BRCC3 (ENSG00000185515)	VBP1 (ENSG00000155959)	RAB39B (ENSG00000155961)
Pan	ANCESTRAL SPECIES	72																ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.b.a ##22	ENSGT00530000063801.a.n
Chimpanzee	DUPLICATION
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	119																ENSPTRG00000043196 ##22	ENSPTRG00000050626 ##22	ENSPTRG00000050475	ENSPTRG00000046358
Chimpanzee	MODERN SPECIES	972	MTCP1 (ENSPTRG00000022457)	CMC4 (ENSPTRG00000039562)	FUNDC2 (ENSPTRG00000044160)	ENSPTRG00000052307	ENSPTRG00000052848	F8 (ENSPTRG00000022455)	SMIM9 (ENSPTRG00000028167)	ENSPTRG00000046688	MPP1 (ENSPTRG00000022450)	DKC1 (ENSPTRG00000022449)	GAB3 (ENSPTRG00000022447)	ENSPTRG00000022446 ##22	ENSPTRG00000045486 #17	ENSPTRG00000052333	ENSPTRG00000043176	ENSPTRG00000040429 ##22	ENSPTRG00000022445 ##22	ENSPTRG00000044790	ENSPTRG00000050406	IKBKG (ENSPTRG00000040677) #17	G6PD (ENSPTRG00000022443) #18	FAM3A (ENSPTRG00000022442) #19	SLC10A3 (ENSPTRG00000051548) #20	UBL4A (ENSPTRG00000022440) #21	LAGE3 (ENSPTRG00000022439) #22	PLXNA3 (ENSPTRG00000022438) #23	FAM50A (ENSPTRG00000022437) #24	GDI1 (ENSPTRG00000028169) #25	ATP6AP1 (ENSPTRG00000022435) #26	TAFAZZIN (ENSPTRG00000022434) #27	DNASE1L1 (ENSPTRG00000042704) #28
Chimpanzee	MODERN SPECIES	119														ENSPTRG00000046358	ENSPTRG00000050475	ENSPTRG00000050626 ##22	ENSPTRG00000043196 ##22
Gorilla	MODERN SPECIES	523	CLIC2 (ENSGGOG00000023292)	RAB39B (ENSGGOG00000005567)	VBP1 (ENSGGOG00000027061)	BRCC3 (ENSGGOG00000027248)	MTCP1 (ENSGGOG00000037091)	CMC4 (ENSGGOG00000011528)	FUNDC2 (ENSGGOG00000026954)	ENSGGOG00000003617	F8 (ENSGGOG00000003600)	SMIM9 (ENSGGOG00000005354)	ENSGGOG00000025061	MPP1 (ENSGGOG00000001049)	DKC1 (ENSGGOG00000001045)	GAB3 (ENSGGOG00000001042)	ENSGGOG00000025843 #17	ENSGGOG00000043272 ##22	ENSGGOG00000022830 ##22	ENSGGOG00000040976	ENSGGOG00000025927	IKBKG (ENSGGOG00000004896) #17	G6PD (ENSGGOG00000004890) #18	ENSGGOG00000005270 #19	SLC10A3 (ENSGGOG00000013520) #20	ENSGGOG00000013509 #21	LAGE3 (ENSGGOG00000013507) #22	PLXNA3 (ENSGGOG00000013493) #23	ENSGGOG00000013484 #24	GDI1 (ENSGGOG00000013474) #25	ATP6AP1 (ENSGGOG00000013466) #26	TAZ (ENSGGOG00000011947) #27	DNASE1L1 (ENSGGOG00000000132) #28
Orangutan	MODERN SPECIES	242	FLNA (ENSPPYG00000020871) #31	EMD (ENSPPYG00000020873) #30	RPL10 (ENSPPYG00000020874) ##29	DNASE1L1 (ENSPPYG00000020875) #28	TAFAZZIN (ENSPPYG00000020876) #27	ATP6AP1 (ENSPPYG00000020877) #26	GDI1 (ENSPPYG00000020878) #25	FAM50A (ENSPPYG00000020879) #24	LAGE3 (ENSPPYG00000033247) #22	UBL4A (ENSPPYG00000020882) #21	SLC10A3 (ENSPPYG00000020883) #20	FAM3A (ENSPPYG00000020884) #19	G6PD (ENSPPYG00000020885) #18	IKBKG (ENSPPYG00000020886) #17	ENSPPYG00000020887	ENSPPYG00000020888 ##22	CTAG2 (ENSPPYG00000020890) ##22	GAB3 (ENSPPYG00000020891)	DKC1 (ENSPPYG00000020892)	MPP1 (ENSPPYG00000020893)	SMIM9 (ENSPPYG00000020894)	F8 (ENSPPYG00000020895)	ENSPPYG00000035928	ENSPPYG00000038630	FUNDC2 (ENSPPYG00000020897)	CMC4 (ENSPPYG00000020898)	MTCP1 (ENSPPYG00000035172)	BRCC3 (ENSPPYG00000020899)	VBP1 (ENSPPYG00000020900)	RAB39B (ENSPPYG00000032989)	CLIC2 (ENSPPYG00000020902)
Cercopithecidae	ANCESTRAL SPECIES	37	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519
Cercopithecinae	ANCESTRAL SPECIES	25	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00910000148519
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00910000148519	ENSGT00940000158132
Macaca	ANCESTRAL SPECIES	13	ENSGT00940000153588.b #31	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00940000158132	ENSGT00940000161397	ENSGT00940000163020
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00940000153588.b #31	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.b.b	ENSGT00530000063808.a #17	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00940000158132	ENSGT00940000161397	ENSGT00940000163020	ENSGT00390000016992
Rhesus	MODERN SPECIES	327	CMC4 (ENSMMUG00000050298)	ENSMMUG00000061897	FUNDC2 (ENSMMUG00000053499)	ENSMMUG00000009476	H2AB1 (ENSMMUG00000059127)	F8 (ENSMMUG00000010245)	SMIM9 (ENSMMUG00000062044)	ENSMMUG00000060911	MPP1 (ENSMMUG00000005772)	DKC1 (ENSMMUG00000005768)	GAB3 (ENSMMUG00000015190)	ENSMMUG00000045112 ##22	ENSMMUG00000051337	IKBKG (ENSMMUG00000017277) #17	ENSMMUG00000051483	ENSMMUG00000017405 ##22	ENSMMUG00000052573 ##22	G6PD (ENSMMUG00000017409) #18	FAM3A (ENSMMUG00000009012) #19	ENSMMUG00000063935	UBL4A (ENSMMUG00000009015) #20	LAGE3 (ENSMMUG00000040340) #22	PLXNA3 (ENSMMUG00000005507) #23	FAM50A (ENSMMUG00000005505) #24	GDI1 (ENSMMUG00000005502) #25	ATP6AP1 (ENSMMUG00000005501) #26	TAFAZZIN (ENSMMUG00000005498) #27	DNASE1L1 (ENSMMUG00000050873) #28	RPL10 (ENSMMUG00000005494) ##29	FLNA (ENSMMUG00000013668) #31	EMD (ENSMMUG00000013678) #30
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00410000025802.h.a.a ##22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00410000025802.h.a.a ##22
Drill	MODERN SPECIES	704																ENSMLEG00000030687 ##22
Vervet Monkey	MODERN SPECIES	203	TMEM187 (ENSCSAG00000000523) #37	IRAK1 (ENSCSAG00000006804) #36	MECP2 (ENSCSAG00000006798) #35	ENSCSAG00000006792 #34	TEX28 (ENSCSAG00000006786) #33	TKTL1 (ENSCSAG00000006779) #32	FLNA (ENSCSAG00000006772) #31	EMD (ENSCSAG00000006760) #30	PLXNA3 (ENSCSAG00000006756) #23	ENSCSAG00000006746	UBL4A (ENSCSAG00000006742) #21	SLC10A3 (ENSCSAG00000000522) #20	FAM3A (ENSCSAG00000006738) #19	G6PD (ENSCSAG00000006732) #18	IKBKG (ENSCSAG00000006727) #17	ENSCSAG00000006721 ##22	GAB3 (ENSCSAG00000006717)	DKC1 (ENSCSAG00000006706)	MPP1 (ENSCSAG00000006698)	SMIM9 (ENSCSAG00000006693)	F8 (ENSCSAG00000006668)	ENSCSAG00000000521	ENSCSAG00000000520	ENSCSAG00000000519	FUNDC2 (ENSCSAG00000006563)	CMC4 (ENSCSAG00000006553)	MTCP1 (ENSCSAG00000006547)	BRCC3 (ENSCSAG00000006538)	ENSCSAG00000006524	RAB39B (ENSCSAG00000006507)	CLIC2 (ENSCSAG00000006505)
Rhinopithecus	ANCESTRAL SPECIES	316	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22
Black snub-nosed monkey	MODERN SPECIES	1888	DNASE1L1 (ENSRBIG00000030074) #28	TAFAZZIN (ENSRBIG00000035066) #27	ATP6AP1 (ENSRBIG00000036700) #26	GDI1 (ENSRBIG00000042799) #25	FAM50A (ENSRBIG00000037965) #24	PLXNA3 (ENSRBIG00000035203) #23	ENSRBIG00000034128	UBL4A (ENSRBIG00000023877) #21	SLC10A3 (ENSRBIG00000034698) #20	FAM3A (ENSRBIG00000025198) #19	ENSRBIG00000028634	G6PD (ENSRBIG00000030157) #18	ENSRBIG00000029055	IKBKG (ENSRBIG00000031684) #17	ENSRBIG00000027585	ENSRBIG00000030147 ##22
Golden snub-nosed monkey	MODERN SPECIES	1454	ENSRROG00000019247 ##29	DNASE1L1 (ENSRROG00000037526) #28	TAFAZZIN (ENSRROG00000037988) #27	ATP6AP1 (ENSRROG00000026809) #26	FAM50A (ENSRROG00000038239) #24	PLXNA3 (ENSRROG00000044893) #23	LAGE3 (ENSRROG00000012840) #22	UBL4A (ENSRROG00000006560) #21	SLC10A3 (ENSRROG00000044112) #20	FAM3A (ENSRROG00000043376) #19	ENSRROG00000033119	G6PD (ENSRROG00000033216) #18	IKBKG (ENSRROG00000008677) #17	ENSRROG00000035084	ENSRROG00000013818	ENSRROG00000034699 ##22	CTAG2 (ENSRROG00000025938) ##22
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00940000158132	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00530000063582.a	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.e.a #29
Hominidae	ANCESTRAL SPECIES																	ENSGT00410000025802.h.a.b ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00410000025802.h.a.b ##22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00410000025802.h.a.b ##22
Human	MODERN SPECIES	1827	H2AB2 (ENSG00000277858)	CLIC2 (ENSG00000155962)	RAB39B (ENSG00000155961)	VBP1 (ENSG00000155959)	BRCC3 (ENSG00000185515)	MTCP1 (ENSG00000214827)	CMC4 (ENSG00000182712)	FUNDC2 (ENSG00000165775)	F8A1 (ENSG00000288722)	H2AB1 (ENSG00000274183)	F8 (ENSG00000185010)	SMIM9 (ENSG00000203870)	MPP1 (ENSG00000130830)	DKC1 (ENSG00000130826)	GAB3 (ENSG00000160219)	CTAG2 (ENSG00000126890) ##22	CTAG1B (ENSG00000184033) ##22	CTAG1A (ENSG00000268651) ##22	IKBKG (ENSG00000269335) #17	G6PD (ENSG00000160211) #18	FAM3A (ENSG00000071889) #19	SLC10A3 (ENSG00000126903) #20	UBL4A (ENSG00000102178) #21	LAGE3 (ENSG00000196976) #22	PLXNA3 (ENSG00000130827) #23	FAM50A (ENSG00000071859) #24	GDI1 (ENSG00000203879) #25	ATP6AP1 (ENSG00000071553) #26	TAFAZZIN (ENSG00000102125) #27	DNASE1L1 (ENSG00000013563) #28	RPL10 (ENSG00000147403) ##29
Pan	ANCESTRAL SPECIES																	ENSGT00410000025802.h.a.b ##22
Bonobo	MODERN SPECIES	369	ENSPPAG00000037387	CLIC2 (ENSPPAG00000041308)	RAB39B (ENSPPAG00000041186)	VBP1 (ENSPPAG00000036017)	BRCC3 (ENSPPAG00000039895)	MTCP1 (ENSPPAG00000029273)	CMC4 (ENSPPAG00000030202)	FUNDC2 (ENSPPAG00000028980)	ENSPPAG00000022594	F8 (ENSPPAG00000033513)	SMIM9 (ENSPPAG00000035097)	ENSPPAG00000031767	MPP1 (ENSPPAG00000040588)	DKC1 (ENSPPAG00000023820)	GAB3 (ENSPPAG00000033506)	ENSPPAG00000030022 ##22	ENSPPAG00000024171	IKBKG (ENSPPAG00000019041) #17	G6PD (ENSPPAG00000030117) #18	ENSPPAG00000028567 #19	SLC10A3 (ENSPPAG00000036137) #20	ENSPPAG00000035975 #21	LAGE3 (ENSPPAG00000028018) #22	PLXNA3 (ENSPPAG00000037363) #23	ENSPPAG00000043116 #24	GDI1 (ENSPPAG00000027756) #25	ATP6AP1 (ENSPPAG00000036293) #26	TAFAZZIN (ENSPPAG00000036682) #27	DNASE1L1 (ENSPPAG00000012889) #28	ENSPPAG00000034160 #29	MECP2 (ENSPPAG00000034020) #35
Orangutan	MODERN SPECIES	242	ENSPPYG00000037853	CLIC2 (ENSPPYG00000020902)	RAB39B (ENSPPYG00000032989)	VBP1 (ENSPPYG00000020900)	BRCC3 (ENSPPYG00000020899)	MTCP1 (ENSPPYG00000035172)	CMC4 (ENSPPYG00000020898)	FUNDC2 (ENSPPYG00000020897)	ENSPPYG00000038630	ENSPPYG00000035928	F8 (ENSPPYG00000020895)	SMIM9 (ENSPPYG00000020894)	MPP1 (ENSPPYG00000020893)	DKC1 (ENSPPYG00000020892)	GAB3 (ENSPPYG00000020891)	CTAG2 (ENSPPYG00000020890) ##22	ENSPPYG00000020888 ##22	ENSPPYG00000020887	IKBKG (ENSPPYG00000020886) #17	G6PD (ENSPPYG00000020885) #18	FAM3A (ENSPPYG00000020884) #19	SLC10A3 (ENSPPYG00000020883) #20	UBL4A (ENSPPYG00000020882) #21	LAGE3 (ENSPPYG00000033247) #22	FAM50A (ENSPPYG00000020879) #24	GDI1 (ENSPPYG00000020878) #25	ATP6AP1 (ENSPPYG00000020877) #26	TAFAZZIN (ENSPPYG00000020876) #27	DNASE1L1 (ENSPPYG00000020875) #28	RPL10 (ENSPPYG00000020874) ##29	EMD (ENSPPYG00000020873) #30
Cercopithecidae	ANCESTRAL SPECIES	37	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00910000148519	ENSGT00940000158132
Cercopithecinae	ANCESTRAL SPECIES	25	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00910000148519	ENSGT00940000158132
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00910000148519	ENSGT00940000158132	ENSGT00940000161397
Macaca	ANCESTRAL SPECIES	13	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00940000158132	ENSGT00940000161397	ENSGT00940000163020	ENSGT00390000016992
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.b.b	ENSGT00530000063808.a #17	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.e.b	ENSGT00390000006885.a	ENSGT00390000000360.q.a	ENSGT00950000183068.a.a	ENSGT00390000018904.hb	ENSGT00940000158132	ENSGT00940000161397	ENSGT00940000163020	ENSGT00390000016992	ENSGT00530000063582.a
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	327	TAFAZZIN (ENSMMUG00000005498) #27	ATP6AP1 (ENSMMUG00000005501) #26	GDI1 (ENSMMUG00000005502) #25	FAM50A (ENSMMUG00000005505) #24	PLXNA3 (ENSMMUG00000005507) #23	LAGE3 (ENSMMUG00000040340) #22	UBL4A (ENSMMUG00000009015) #20	ENSMMUG00000063935	FAM3A (ENSMMUG00000009012) #19	G6PD (ENSMMUG00000017409) #18	ENSMMUG00000052573 ##22	ENSMMUG00000017405 ##22	ENSMMUG00000051483	IKBKG (ENSMMUG00000017277) #17	ENSMMUG00000051337	ENSMMUG00000045112 ##22	GAB3 (ENSMMUG00000015190)	DKC1 (ENSMMUG00000005768)	MPP1 (ENSMMUG00000005772)	ENSMMUG00000060911	SMIM9 (ENSMMUG00000062044)	F8 (ENSMMUG00000010245)	H2AB1 (ENSMMUG00000059127)	ENSMMUG00000009476	FUNDC2 (ENSMMUG00000053499)	ENSMMUG00000061897	CMC4 (ENSMMUG00000050298)	MTCP1 (ENSMMUG00000010251)	BRCC3 (ENSMMUG00000010253)	ENSMMUG00000062127	ENSMMUG00000052111
Rhesus	MODERN SPECIES	327	ENSMMUG00000061897	FUNDC2 (ENSMMUG00000053499)	ENSMMUG00000009476	H2AB1 (ENSMMUG00000059127)	F8 (ENSMMUG00000010245)	SMIM9 (ENSMMUG00000062044)	ENSMMUG00000060911	MPP1 (ENSMMUG00000005772)	DKC1 (ENSMMUG00000005768)	GAB3 (ENSMMUG00000015190)	ENSMMUG00000045112 ##22	ENSMMUG00000051337	IKBKG (ENSMMUG00000017277) #17	ENSMMUG00000051483	ENSMMUG00000017405 ##22	ENSMMUG00000052573 ##22	G6PD (ENSMMUG00000017409) #18	FAM3A (ENSMMUG00000009012) #19	ENSMMUG00000063935	UBL4A (ENSMMUG00000009015) #20	LAGE3 (ENSMMUG00000040340) #22	PLXNA3 (ENSMMUG00000005507) #23	FAM50A (ENSMMUG00000005505) #24	GDI1 (ENSMMUG00000005502) #25	ATP6AP1 (ENSMMUG00000005501) #26	TAFAZZIN (ENSMMUG00000005498) #27	DNASE1L1 (ENSMMUG00000050873) #28	RPL10 (ENSMMUG00000005494) ##29	FLNA (ENSMMUG00000013668) #31	EMD (ENSMMUG00000013678) #30	TKTL1 (ENSMMUG00000013667) #32
Cercopithecinae_b	ANCESTRAL SPECIES	66	ENSGT00530000063582.a	ENSGT00940000161397	ENSGT00940000158132	ENSGT00910000148519	ENSGT00390000018904.hb	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22
Cercopithecinae_d	ANCESTRAL SPECIES	196		ENSGT00940000161397	ENSGT00940000158132	ENSGT00910000148519	ENSGT00390000018904.hb	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##22
Sooty mangabey	MODERN SPECIES	417		CLIC2 (ENSCATG00000030595)	RAB39B (ENSCATG00000034919)	ENSCATG00000016846	VBP1 (ENSCATG00000028770)	BRCC3 (ENSCATG00000021334)	CMC4 (ENSCATG00000030790)	MTCP1 (ENSCATG00000035622)	FUNDC2 (ENSCATG00000024236)	F8 (ENSCATG00000031608)	ENSCATG00000030353	SMIM9 (ENSCATG00000029574)	MPP1 (ENSCATG00000039189)	DKC1 (ENSCATG00000033602)	GAB3 (ENSCATG00000030384)	CTAG2 (ENSCATG00000028740) ##22	IKBKG (ENSCATG00000030712) #17	ENSCATG00000015047	ENSCATG00000015388 ##22
Rhinopithecus	ANCESTRAL SPECIES	316	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.m #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00910000147580	ENSGT00530000063808.a #17	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##22	ENSGT00410000025802.h.a.b ##22
Golden snub-nosed monkey	MODERN SPECIES	1454	DNASE1L1 (ENSRROG00000037526) #28	TAFAZZIN (ENSRROG00000037988) #27	ATP6AP1 (ENSRROG00000026809) #26	FAM50A (ENSRROG00000038239) #24	PLXNA3 (ENSRROG00000044893) #23	LAGE3 (ENSRROG00000012840) #22	UBL4A (ENSRROG00000006560) #21	SLC10A3 (ENSRROG00000044112) #20	FAM3A (ENSRROG00000043376) #19	ENSRROG00000033119	G6PD (ENSRROG00000033216) #18	IKBKG (ENSRROG00000008677) #17	ENSRROG00000035084	ENSRROG00000013818	ENSRROG00000034699 ##22	CTAG2 (ENSRROG00000025938) ##22
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000161397	ENSGT00940000158132	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00410000025802.h.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647.g	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b.n ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Cebidae	ANCESTRAL SPECIES	27	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647.g	ENSGT00940000154783.e.a.a.a	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b.n ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Cebidae_a	ANCESTRAL SPECIES	78	ENSGT00950000183055.a.b	ENSGT00530000063582.a	ENSGT00390000016992	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647.g	ENSGT00940000154783.e.a.a.a	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b.n ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Capuchin	MODERN SPECIES	862		ENSCCAG00000024992 #29	DNASE1L1 (ENSCCAG00000038109) #28	TAZ (ENSCCAG00000033091) #27	ATP6AP1 (ENSCCAG00000026799) #26	GDI1 (ENSCCAG00000023267) #25	FAM50A (ENSCCAG00000022089) #24	PLXNA3 (ENSCCAG00000029210) #23	LAGE3 (ENSCCAG00000021965) #22	UBL4A (ENSCCAG00000033285) #21	SLC10A3 (ENSCCAG00000020474) #20	FAM3A (ENSCCAG00000030432) #19	ENSCCAG00000025941	G6PD (ENSCCAG00000033900) #18	IKBKG (ENSCCAG00000030204) #17	ENSCCAG00000030506 ##22
Bolivian squirrel monkey	MODERN SPECIES	236				CLIC2 (ENSSBOG00000022219)	RAB39B (ENSSBOG00000025110)	ENSSBOG00000022626	BRCC3 (ENSSBOG00000035771)	MTCP1 (ENSSBOG00000021241)	CMC4 (ENSSBOG00000033964)	ENSSBOG00000034180	F8 (ENSSBOG00000002240)	SMIM9 (ENSSBOG00000018626)	MPP1 (ENSSBOG00000026026)	DKC1 (ENSSBOG00000033746)	GAB3 (ENSSBOG00000027441)	ENSSBOG00000031845 ##22	IKBKG (ENSSBOG00000033453) #17	G6PD (ENSSBOG00000003239) #18	FAM3A (ENSSBOG00000030279) #19	SLC10A3 (ENSSBOG00000027728) #20	UBL4A (ENSSBOG00000030369) #21	LAGE3 (ENSSBOG00000024470) #22	PLXNA3 (ENSSBOG00000034877) #23	FAM50A (ENSSBOG00000029861) #24	GDI1 (ENSSBOG00000021247) #25	ATP6AP1 (ENSSBOG00000027327) #26	TAFAZZIN (ENSSBOG00000029961) #27	ENSSBOG00000033124	DNASE1L1 (ENSSBOG00000028977) #28	ENSSBOG00000025724 ##29	EMD (ENSSBOG00000027560) #30
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00530000063687.b.b.b.f #35
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.f #29	ENSGT00530000063687.b.b.b.f #35
Pan	ANCESTRAL SPECIES	72															ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##22	ENSGT00410000025802.h.a.a ##22
Bonobo	MODERN SPECIES	222															ENSPPAG00000011214	ENSPPAG00000010707 ##22
Chimpanzee	MODERN SPECIES	972	RPL10 (ENSPTRG00000043378) #29	DNASE1L1 (ENSPTRG00000042704) #28	TAFAZZIN (ENSPTRG00000022434) #27	ATP6AP1 (ENSPTRG00000022435) #26	GDI1 (ENSPTRG00000028169) #25	FAM50A (ENSPTRG00000022437) #24	PLXNA3 (ENSPTRG00000022438) #23	LAGE3 (ENSPTRG00000022439) #22	UBL4A (ENSPTRG00000022440) #21	SLC10A3 (ENSPTRG00000051548) #20	FAM3A (ENSPTRG00000022442) #19	G6PD (ENSPTRG00000022443) #18	IKBKG (ENSPTRG00000040677) #17	ENSPTRG00000050406	ENSPTRG00000044790	ENSPTRG00000022445 ##22	ENSPTRG00000040429 ##22	ENSPTRG00000043176	ENSPTRG00000052333	ENSPTRG00000045486 #17	ENSPTRG00000022446 ##22	GAB3 (ENSPTRG00000022447)	DKC1 (ENSPTRG00000022449)	MPP1 (ENSPTRG00000022450)	ENSPTRG00000046688	SMIM9 (ENSPTRG00000028167)	F8 (ENSPTRG00000022455)	ENSPTRG00000052848	ENSPTRG00000052307	FUNDC2 (ENSPTRG00000044160)	CMC4 (ENSPTRG00000039562)
Gorilla	MODERN SPECIES	523	ENSGGOG00000000131 #29	DNASE1L1 (ENSGGOG00000000132) #28	TAZ (ENSGGOG00000011947) #27	ATP6AP1 (ENSGGOG00000013466) #26	GDI1 (ENSGGOG00000013474) #25	ENSGGOG00000013484 #24	PLXNA3 (ENSGGOG00000013493) #23	LAGE3 (ENSGGOG00000013507) #22	ENSGGOG00000013509 #21	SLC10A3 (ENSGGOG00000013520) #20	ENSGGOG00000005270 #19	G6PD (ENSGGOG00000004890) #18	IKBKG (ENSGGOG00000004896) #17	ENSGGOG00000025927	ENSGGOG00000040976	ENSGGOG00000022830 ##22	ENSGGOG00000043272 ##22	ENSGGOG00000025843 #17	GAB3 (ENSGGOG00000001042)	DKC1 (ENSGGOG00000001045)	MPP1 (ENSGGOG00000001049)	ENSGGOG00000025061	SMIM9 (ENSGGOG00000005354)	F8 (ENSGGOG00000003600)	ENSGGOG00000003617	FUNDC2 (ENSGGOG00000026954)	CMC4 (ENSGGOG00000011528)	MTCP1 (ENSGGOG00000037091)	BRCC3 (ENSGGOG00000027248)	VBP1 (ENSGGOG00000027061)	RAB39B (ENSGGOG00000005567)
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.a ##22
Sooty mangabey	MODERN SPECIES	417	ENSCATG00000016846	VBP1 (ENSCATG00000028770)	BRCC3 (ENSCATG00000021334)	CMC4 (ENSCATG00000030790)	MTCP1 (ENSCATG00000035622)	FUNDC2 (ENSCATG00000024236)	F8 (ENSCATG00000031608)	ENSCATG00000030353	SMIM9 (ENSCATG00000029574)	MPP1 (ENSCATG00000039189)	DKC1 (ENSCATG00000033602)	GAB3 (ENSCATG00000030384)	CTAG2 (ENSCATG00000028740) ##22	IKBKG (ENSCATG00000030712) #17	ENSCATG00000015047	ENSCATG00000015388 ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.b ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00410000025802.h.b.b ##22
Hominidae	ANCESTRAL SPECIES	8	ENSGT00530000063582.a	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b.f #29
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00530000063582.a	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00530000063582.a	ENSGT00390000016992.cb.b	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##22	ENSGT00410000025802.h.a.a ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28
Pan	ANCESTRAL SPECIES	43	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.q.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.e.b	ENSGT00390000016992.bb	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00390000011549.e	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##22	ENSGT00390000002566	ENSGT00530000063808.a #17	ENSGT00530000063435.a.i #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a.m #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28
Chimpanzee	MODERN SPECIES	972	CLIC2 (ENSPTRG00000022462)	RAB39B (ENSPTRG00000042083)	VBP1 (ENSPTRG00000022460)	BRCC3 (ENSPTRG00000044491)	MTCP1 (ENSPTRG00000022457)	CMC4 (ENSPTRG00000039562)	FUNDC2 (ENSPTRG00000044160)	ENSPTRG00000052307	ENSPTRG00000052848	F8 (ENSPTRG00000022455)	SMIM9 (ENSPTRG00000028167)	ENSPTRG00000046688	MPP1 (ENSPTRG00000022450)	DKC1 (ENSPTRG00000022449)	GAB3 (ENSPTRG00000022447)	ENSPTRG00000022446 ##22	ENSPTRG00000045486 #17	ENSPTRG00000052333	ENSPTRG00000043176	ENSPTRG00000040429 ##22	ENSPTRG00000022445 ##22	ENSPTRG00000044790	ENSPTRG00000050406	IKBKG (ENSPTRG00000040677) #17	G6PD (ENSPTRG00000022443) #18	FAM3A (ENSPTRG00000022442) #19	SLC10A3 (ENSPTRG00000051548) #20	UBL4A (ENSPTRG00000022440) #21	LAGE3 (ENSPTRG00000022439) #22	PLXNA3 (ENSPTRG00000022438) #23	FAM50A (ENSPTRG00000022437) #24
Euarchontoglires_A	ANCESTRAL SPECIES	147																ENSGT00410000025802.h ##22	ENSGT01030000238159
Glires	ANCESTRAL SPECIES	145																ENSGT00410000025802.h ##22	ENSGT01030000238159
Rodentia	ANCESTRAL SPECIES	153																ENSGT00410000025802.h ##22	ENSGT01030000238159
Rodentia_A	ANCESTRAL SPECIES	166																ENSGT00410000025802.h ##22	ENSGT01030000238159
Sciuridae	ANCESTRAL SPECIES	161																ENSGT00410000025802.h ##22	ENSGT01030000238159
Eurasian red squirrel	MODERN SPECIES	156	DNASE1L1 (ENSSVLG00005018343) #28	TAFAZZIN (ENSSVLG00005018196) #27	ATP6AP1 (ENSSVLG00005018016) #26	GDI1 (ENSSVLG00005017962) #25	FAM50A (ENSSVLG00005017921) #24	PLXNA3 (ENSSVLG00005017881) #23	LAGE3 (ENSSVLG00005017858) #22	UBL4A (ENSSVLG00005017819) #21	SLC10A3 (ENSSVLG00005017774) #20	FAM3A (ENSSVLG00005017584) #19	G6PD (ENSSVLG00005017520) #18	IKBKG (ENSSVLG00005017293) #17	ENSSVLG00005017218	ENSSVLG00005017166	ENSSVLG00005017122	ENSSVLG00005017050 ##22	ENSSVLG00005016985	GAB3 (ENSSVLG00005016708)	DKC1 (ENSSVLG00005016642)	MPP1 (ENSSVLG00005016498)	SMIM9 (ENSSVLG00005016452)	ENSSVLG00005016435	ENSSVLG00005016424	F8 (ENSSVLG00005016200)	ENSSVLG00005016124	MTCP1 (ENSSVLG00005016077)	ENSSVLG00005015678	ENSSVLG00005015476	RAB39B (ENSSVLG00005015437)	CLIC2 (ENSSVLG00005015403)	ENSSVLG00005015390
Marmotini	ANCESTRAL SPECIES																	ENSGT00410000025802.h ##22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00410000025802.h ##22
Arctic ground squirrel	MODERN SPECIES	823	ENSUPAG00010000252 #29	DNASE1L1 (ENSUPAG00010000232) #28	TAFAZZIN (ENSUPAG00010000055) #27	ATP6AP1 (ENSUPAG00010011086) #26	GDI1 (ENSUPAG00010011085) #25	ENSUPAG00010011078 #24	PLXNA3 (ENSUPAG00010011001) #23	ENSUPAG00010010993	ENSUPAG00010010991 #22	SLC10A3 (ENSUPAG00010010974) #20	FAM3A (ENSUPAG00010010917) #19	IKBKG (ENSUPAG00010010819) #17	ENSUPAG00010010808	ENSUPAG00010010804	ENSUPAG00010010787	ENSUPAG00010010780 ##22	ENSUPAG00010010746 ##22
Laurasiatheria	ANCESTRAL SPECIES	26	ENSGT00940000158132	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00940000158132	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT01030000235238	ENSGT00410000025802.h ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00960000186859	ENSGT00410000025802.g.b ##22	ENSGT01030000235238	ENSGT00410000025802.h ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Camelidae	DUPLICATION
Camelidae	ANCESTRAL SPECIES	107														ENSGT00410000025802.h.d ##22	ENSGT00410000025802.g.b.b ##22	ENSGT00410000025802.h.c ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000163020	ENSGT00940000161397	ENSGT00530000063582.a	ENSGT00950000183055.a.b
Arabian camel	MODERN SPECIES	204	DNASE1L1 (ENSCDRG00005012179) #28	TAZ (ENSCDRG00005012375) #27	ATP6AP1 (ENSCDRG00005012618) #26	GDI1 (ENSCDRG00005012702) #25	FAM50A (ENSCDRG00005012822) #24	LAGE3 (ENSCDRG00005015984) #22	SLC10A3 (ENSCDRG00005016014) #20	FAM3A (ENSCDRG00005016065) #19	G6PD (ENSCDRG00005016281) #18	IKBKG (ENSCDRG00005016363) #17	ENSCDRG00005016489	ENSCDRG00005016521 ##22	ENSCDRG00005016563 ##22	ENSCDRG00005016586 ##22	GAB3 (ENSCDRG00005016636)	ENSCDRG00005017097 ##22	DKC1 (ENSCDRG00005017117)	MPP1 (ENSCDRG00005017184)	SMIM9 (ENSCDRG00005017392)	F8 (ENSCDRG00005017422)	ENSCDRG00005017538	CMC4 (ENSCDRG00005017574)	MTCP1 (ENSCDRG00005017604)	BRCC3 (ENSCDRG00005017635)	VBP1 (ENSCDRG00005017794)	RAB39B (ENSCDRG00005017901)	ENSCDRG00005018049	CLIC2 (ENSCDRG00005018062)	TMLHE (ENSCDRG00005018097)	SPRY3 (ENSCDRG00005018145)	VAMP7 (ENSCDRG00005018159)
Camelidae	ANCESTRAL SPECIES	107																ENSGT00410000025802.h.d ##22	ENSGT00410000025802.g.b.b ##22	ENSGT00410000025802.h.c ##22	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000163020	ENSGT00940000161397
Alpaca	MODERN SPECIES	5849																ENSVPAG00000003131 ##22
Arabian camel	MODERN SPECIES	204	FLNA (ENSCDRG00005011684) #31	ENSCDRG00005011914 #30	ENSCDRG00005012077 #29	DNASE1L1 (ENSCDRG00005012179) #28	TAZ (ENSCDRG00005012375) #27	ATP6AP1 (ENSCDRG00005012618) #26	GDI1 (ENSCDRG00005012702) #25	FAM50A (ENSCDRG00005012822) #24	LAGE3 (ENSCDRG00005015984) #22	SLC10A3 (ENSCDRG00005016014) #20	FAM3A (ENSCDRG00005016065) #19	G6PD (ENSCDRG00005016281) #18	IKBKG (ENSCDRG00005016363) #17	ENSCDRG00005016489	ENSCDRG00005016521 ##22	ENSCDRG00005016563 ##22	ENSCDRG00005016586 ##22	GAB3 (ENSCDRG00005016636)	ENSCDRG00005017097 ##22	DKC1 (ENSCDRG00005017117)	MPP1 (ENSCDRG00005017184)	SMIM9 (ENSCDRG00005017392)	F8 (ENSCDRG00005017422)	ENSCDRG00005017538	CMC4 (ENSCDRG00005017574)	MTCP1 (ENSCDRG00005017604)	BRCC3 (ENSCDRG00005017635)	VBP1 (ENSCDRG00005017794)	RAB39B (ENSCDRG00005017901)	ENSCDRG00005018049	CLIC2 (ENSCDRG00005018062)
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00910000148519	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00410000025802.h ##22	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30
Laurasiatheria_c	ANCESTRAL SPECIES	130																ENSGT00410000025802.h ##22	ENSGT01030000238159
Chiroptera	ANCESTRAL SPECIES	48	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000000360.r.c.a	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00530000063582.a	ENSGT00940000163020	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.h ##22	ENSGT01030000238159	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.g.a #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010000120	CLIC2 (ENSRFEG00010000129)	RAB39B (ENSRFEG00010000135)	VBP1 (ENSRFEG00010000140)	ENSRFEG00010000146	BRCC3 (ENSRFEG00010000187)	MTCP1 (ENSRFEG00010000401)	FUNDC2 (ENSRFEG00010002186)	F8 (ENSRFEG00010002258)	ENSRFEG00010002358	ENSRFEG00010002379	SMIM9 (ENSRFEG00010002415)	MPP1 (ENSRFEG00010002502)	DKC1 (ENSRFEG00010002621)	GAB3 (ENSRFEG00010002752)	ENSRFEG00010002860 ##22	ENSRFEG00010002889	ENSRFEG00010002921	ENSRFEG00010002963 ##22	ENSRFEG00010002995 ##22	IKBKG (ENSRFEG00010003030) #17	G6PD (ENSRFEG00010003111) #18	FAM3A (ENSRFEG00010003196) #19	SLC10A3 (ENSRFEG00010003285) #20	UBL4A (ENSRFEG00010003315) #21	LAGE3 (ENSRFEG00010003340) #22	PLXNA3 (ENSRFEG00010003374) #23	FAM50A (ENSRFEG00010003417) #24	GDI1 (ENSRFEG00010003480) #25	ATP6AP1 (ENSRFEG00010003617) #26	TAZ (ENSRFEG00010003720) #27
Carnivora	ANCESTRAL SPECIES	11	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h ##22	ENSGT00410000025802.g.b ##22	ENSGT01050000244815.B.a.a	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000160294	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904
Felidae	ANCESTRAL SPECIES																	ENSGT00410000025802.h ##22
Panthera	ANCESTRAL SPECIES																	ENSGT00410000025802.h ##22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00410000025802.h ##22
lion	MODERN SPECIES	110																ENSPLOG00000006961 ##22
Caniformia	ANCESTRAL SPECIES	22	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h ##22	ENSGT00410000025802.g.b ##22	ENSGT01050000244815.B.a.a	ENSGT00940000159803	ENSGT00510000047092	ENSGT00940000158744	ENSGT00390000005685	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000012647	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904
Canidae	ANCESTRAL SPECIES	50	ENSGT00940000153588.b #31	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h ##22	ENSGT00410000025802.g.b ##22	ENSGT00940000159803	ENSGT00510000047092.a	ENSGT00940000158744	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000012647.a	ENSGT00390000006885.a	ENSGT00390000000360.r.d	ENSGT00950000183068.a.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a.g #22	ENSGT00410000025802.g.a.h #22	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h ##22	ENSGT00410000025802.g.b.k ##22	ENSGT00940000159803	ENSGT00510000047092.a	ENSGT00940000158744	ENSGT00940000163020	ENSGT00390000016992.m	ENSGT00940000160294	ENSGT00940000154783.f	ENSGT00390000006885.a	ENSGT00390000012647.a	ENSGT00390000000360.r.c.a	ENSGT00390000018904	ENSGT00940000158132	ENSGT00940000161397	ENSGT00530000063582.a
Dog	MODERN SPECIES	144	FLNA (ENSCAFG00845027901) #31	RPL10 (ENSCAFG00845028627) ##29	DNASE1L1 (ENSCAFG00845028675) #28	TAZ (ENSCAFG00845028739) #27	GDI1 (ENSCAFG00845028921) #25	ATP6AP1 (ENSCAFG00845029004) #26	FAM50A (ENSCAFG00845029041) #24	PLXNA3 (ENSCAFG00845029121) #23	ENSCAFG00845029273 #22	UBL4A (ENSCAFG00845029287) #21	SLC10A3 (ENSCAFG00845029316) #20	ENSCAFG00845029578 #19	G6PD (ENSCAFG00845029388) #18	IKBKG (ENSCAFG00845029634) #17	cOR7R1 (ENSCAFG00845029673)	ENSCAFG00845029686 ##22	ENSCAFG00845029697 ##22	LAGE3 (ENSCAFG00845029708) #22	ENSCAFG00845029817 ##22	DKC1 (ENSCAFG00845029852)	MPP1 (ENSCAFG00845029936)	F8 (ENSCAFG00845030098)	ENSCAFG00845030269	ENSCAFG00845030278	FUNDC2 (ENSCAFG00845030300)	CMC4 (ENSCAFG00845030338)	MTCP1 (ENSCAFG00845030350)	VBP1 (ENSCAFG00845017867)	RAB39B (ENSCAFG00845017965)	CLIC2 (ENSCAFG00845017998)	ENSCAFG00845018126
Dingo	MODERN SPECIES	383	ENSCAFG00020009114 ##29	DNASE1L1 (ENSCAFG00020009104) #28	TAFAZZIN (ENSCAFG00020009089) #27	ATP6AP1 (ENSCAFG00020009077) #26	GDI1 (ENSCAFG00020009070) #25	FAM50A (ENSCAFG00020009064) #24	PLXNA3 (ENSCAFG00020009040) #23	ENSCAFG00020009037 #22	UBL4A (ENSCAFG00020009032) #21	SLC10A3 (ENSCAFG00020009027) #20	FAM3A (ENSCAFG00020009021) #19	G6PD (ENSCAFG00020008999) #18	IKBKG (ENSCAFG00020008992) #17	ENSCAFG00020008988	ENSCAFG00020008985	ENSCAFG00020008976 ##22	ENSCAFG00020008968 #22	ENSCAFG00020008959 ##22	ENSCAFG00020008942	ENSCAFG00020008918	MPP1 (ENSCAFG00020008744)	ENSCAFG00020008739	ENSCAFG00020008736	F8 (ENSCAFG00020008704)	FUNDC2 (ENSCAFG00020008699)	MTCP1 (ENSCAFG00020008697)	CMC4 (ENSCAFG00020008696)	ENSCAFG00020008684	VBP1 (ENSCAFG00020008675)	RAB39B (ENSCAFG00020008673)	CLIC2 (ENSCAFG00020008670)
Red fox	MODERN SPECIES	309														ENSVVUG00000004327	ENSVVUG00000004315	ENSVVUG00000004310 ##22
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00390000000360.r.c.b	ENSGT00390000006885.a	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT01030000235238.c	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.h ##22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Mustelinae	ANCESTRAL SPECIES	108	ENSGT00940000162426 #32	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00390000003897.s.b.a.b.b ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.A #24	ENSGT01050000244850.A.a #23	ENSGT00730000111022 #21	ENSGT00950000182808.b.b #20	ENSGT00950000183004.a.a.a.b #19	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00410000025802.h ##22
American mink	MODERN SPECIES	691												UBL4A (ENSNVIG00000015105) #21	FAM3A (ENSNVIG00000015078) #19	G6PD (ENSNVIG00000015003) #18	IKBKG (ENSNVIG00000014940) #17	ENSNVIG00000014931 ##22	ENSNVIG00000014922	ENSNVIG00000014890
Ursidae	ANCESTRAL SPECIES	45	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00390000013102.f	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744.p	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802.h ##22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00940000153588.b #31	ENSGT00390000002034 #30	ENSGT00940000162426 #32	ENSGT00940000162843 #33	ENSGT01030000234549.a.a.a.b.b #34	ENSGT00530000063687.b.b.b #35	ENSGT00940000160502 #36	ENSGT00390000011272 #37
Ursus	ANCESTRAL SPECIES	220																ENSGT00410000025802.h ##22	ENSGT00530000063808.a #17	ENSGT00530000063435.a #18	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT01050000244850.A.a #23	ENSGT00390000004735.A #24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.s.b.a.a.b #29	ENSGT00390000002034 #30	ENSGT00940000153588.b #31
American black bear	MODERN SPECIES	2664																ENSUAMG00000011482 ##22	IKBKG (ENSUAMG00000011490) #17	G6PD (ENSUAMG00000011515) #18	FAM3A (ENSUAMG00000011527) #19	SLC10A3 (ENSUAMG00000011529) #20	UBL4A (ENSUAMG00000011531) #21	PLXNA3 (ENSUAMG00000011554) #23	GDI1 (ENSUAMG00000011657) #25
Polar bear	MODERN SPECIES	330															ENSUMAG00000019262	ENSUMAG00000019269 ##22	IKBKG (ENSUMAG00000019273) #17	G6PD (ENSUMAG00000019300) #18	FAM3A (ENSUMAG00000019452) #19	SLC10A3 (ENSUMAG00000019457) #20	FAM50A (ENSUMAG00000019470) #24	GDI1 (ENSUMAG00000019473) #25	ATP6AP1 (ENSUMAG00000019476) #26	ENSUMAG00000019531 #27	DNASE1L1 (ENSUMAG00000019505) #28	ENSUMAG00000019583 #29	FLNA (ENSUMAG00000019645) #31	EMD (ENSUMAG00000020684) #30	TKTL1 (ENSUMAG00000020693) #32	TEX28 (ENSUMAG00000020707) #33	ENSUMAG00000020714 #34
Giant Panda	MODERN SPECIES	2288	ENSAMEG00000024837	FUNDC2 (ENSAMEG00000011956)	ENSAMEG00000028778	F8 (ENSAMEG00000002491)	SMIM9 (ENSAMEG00000028154)	MPP1 (ENSAMEG00000002802)	DKC1 (ENSAMEG00000002776)	GAB3 (ENSAMEG00000001366)	ENSAMEG00000019282	ENSAMEG00000019272	IKBKG (ENSAMEG00000000410) #17	G6PD (ENSAMEG00000000366) #18	FAM3A (ENSAMEG00000000362) #19	SLC10A3 (ENSAMEG00000000359) #20	UBL4A (ENSAMEG00000026286) #21	ENSAMEG00000026988 ##22	PLXNA3 (ENSAMEG00000000281) #23	FAM50A (ENSAMEG00000000273) #24	GDI1 (ENSAMEG00000000265) #25	ATP6AP1 (ENSAMEG00000000239) #26	ENSAMEG00000000230 #27	ENSAMEG00000000229 #28	RPL10 (ENSAMEG00000000227) ##29	ENSAMEG00000030923	ENSAMEG00000007261 #31	ENSAMEG00000007222 #30	ENSAMEG00000018441 #32	TEX28 (ENSAMEG00000018444) #33	ENSAMEG00000018445 #34	MECP2 (ENSAMEG00000029148) #35	IRAK1 (ENSAMEG00000018449) #36
Marsupialia	ANCESTRAL SPECIES																	ENSGT00410000025802 #22
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT01090000260045.C.e.a.a.a.b.b.b.b.d	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.a.a.a.b	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.b.b	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.b.a	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.b.a	ENSGT01090000260024.A.a.a.b.b.b.b.`b.b.d	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.b.b	ENSGT01050000244815.A.c.b.a.a.a.a.a.b	ENSGT01050000244815.A.c.b.a.a.a.a.b	ENSGT00950000182890.A.a.b.b	ENSGT01050000244815.A.c.b.a.a.a.a.a.a	ENSGT00950000182890.D.c.b.a.a.b.b.a.d.b.a.b	ENSGT00940000154650.d.g.d.b	ENSGT00940000153104.e.a.a.b.a.b.a	ENSGT00940000154650.d.g.d.a	ENSGT00410000025802 #22	ENSGT00950000182890.D.c.b.a.a.b.b.b	ENSGT00940000163270	ENSGT00940000158795	ENSGT00940000159362	ENSGT00940000155946	ENSGT00940000154079.b	ENSGT00940000159944	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000164541	ENSGT00940000160293	ENSGT00390000002471	ENSGT00940000154374.a	ENSGT00390000000642
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00550000074924	ENSGT00940000160924	ENSGT00390000009774	ENSGT01090000260045.C.e.a.a.a.b.b.b.b.d	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.a.a.a.b	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.b.b	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.b.a	ENSGT01090000260024.A.a.a.b.b.b.b.`b.b.c	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.b.b	ENSGT01050000244815.A.c.b.a.a.a.a.a.b	ENSGT01050000244815.A.c.b.a.a.a.a.b	ENSGT00950000182890.D.c.b.a.a.b.b.a.d.b.a.b	ENSGT00940000154650.d.g.d.b	ENSGT00940000153104.e.a.a.b.a.b.a	ENSGT00940000154650.d.g.d.a	ENSGT00410000025802 #22	ENSGT00950000182890.D.c.b.a.a.b.b.b	ENSGT00940000163270	ENSGT00940000158795	ENSGT00940000159362	ENSGT00940000155946	ENSGT00940000154079.b	ENSGT00940000159944	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763
Diprotodontia_a	ANCESTRAL SPECIES	96						ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.b.b	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.a.b.a	ENSGT01090000260024.A.a.a.b.b.b.b.`b.b.c	ENSGT01090000260024.A.a.a.b.b.b.b.`b.a.b.b	ENSGT01050000244815.A.c.b.a.a.a.a.a.b	ENSGT01050000244815.A.c.b.a.a.a.a.b	ENSGT00950000182890.D.c.b.a.a.b.b.a.d.b.a.b	ENSGT00940000154650.d.g.d.b	ENSGT00940000153104.e.a.a.b.a.b.a	ENSGT00940000154650.d.g.d.a	ENSGT00410000025802 #22	ENSGT00950000182890.D.c.b.a.a.b.b.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1024	ENSVURG00010010589	ENSVURG00010010580	ENSVURG00010010559	ENSVURG00010010556	ENSVURG00010010533	ENSVURG00010010525	ENSVURG00010010454	ENSVURG00010010425	ENSVURG00010010418	ENSVURG00010010410	ENSVURG00010010399	ENSVURG00010010391	ENSVURG00010010387	ENSVURG00010010384	ENSVURG00010009941	ENSVURG00010009905 #22	ENSVURG00010009899	ENSVURG00010009885	ENSVURG00010009879	ENSVURG00010009826	ENSVURG00010009813	ENSVURG00010009792	ENSVURG00010009775	ENSVURG00010009773	ENSVURG00010009746	ENSVURG00010009720	ENSVURG00010009701	ENSVURG00010009693	ENSVURG00010009686	ENSVURG00010009649	ENSVURG00010009631
Common wonbat	MODERN SPECIES	1024	ENSVURG00010017993	ENSVURG00010017988	ENSVURG00010017987	ENSVURG00010017984	ENSVURG00010017981	ENSVURG00010017972	ENSVURG00010017967	ENSVURG00010017958	ENSVURG00010017947	ENSVURG00010017943	ENSVURG00010017940	ENSVURG00010017936	ENSVURG00010017933	ENSVURG00010017930	ENSVURG00010017849	ENSVURG00010017834 #22	ENSVURG00010017828	ENSVURG00010017823	ENSVURG00010017816	ENSVURG00010017781	ENSVURG00010017766	ENSVURG00010017746	ENSVURG00010017733	ENSVURG00010017731	ENSVURG00010017724	ENSVURG00010017706	PBX3 (ENSVURG00010017684)	ENSVURG00010017647	ENSVURG00010017616	ENSVURG00010017591	ENSVURG00010017575
koala	MODERN SPECIES	19	ENSPCIG00000021784	ENSPCIG00000030905	UBA2 (ENSPCIG00000021781)	WTIP (ENSPCIG00000021778)	ENSPCIG00000025635	ENSPCIG00000025634	ENSPCIG00000033413	ENSPCIG00000032834	ENSPCIG00000026340	ENSPCIG00000026339	ENSPCIG00000026338	ENSPCIG00000017432	ENSPCIG00000026337	ENSPCIG00000026335	ENSPCIG00000026330	ENSPCIG00000026326 #22	ENSPCIG00000026325	SLC2A8 (ENSPCIG00000007419)	GARNL3 (ENSPCIG00000010221)	ENSPCIG00000033349	RALGPS1 (ENSPCIG00000036997)	ENSPCIG00000035272	ZBTB34 (ENSPCIG00000014682)	LMX1B (ENSPCIG00000001280)
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000004119	ENSSHAG00000003807	ENSSHAG00000030322	ENSSHAG00000000630	ENSSHAG00000002811	ENSSHAG00000001937	ENSSHAG00000026883	ENSSHAG00000016665	ENSSHAG00000027793	ENSSHAG00000031347	ENSSHAG00000016494	ENSSHAG00000026268	ENSSHAG00000023894	ENSSHAG00000030018	ENSSHAG00000028381	ENSSHAG00000027030 #22	ENSSHAG00000031451	ENSSHAG00000022916	ENSSHAG00000004020	SLC2A8 (ENSSHAG00000015867)	GARNL3 (ENSSHAG00000015222)	ANGPTL2 (ENSSHAG00000013947)	RALGPS1 (ENSSHAG00000013101)	ENSSHAG00000031849	ZBTB43 (ENSSHAG00000030880)	ZBTB34 (ENSSHAG00000025162)	LMX1B (ENSSHAG00000009990)	MVB12B (ENSSHAG00000028126)	PBX3 (ENSSHAG00000023136)	MAPKAP1 (ENSSHAG00000005395)	GAPVD1 (ENSSHAG00000009639)
Opossum	MODERN SPECIES		ENSMODG00000038517	ENSMODG00000048978	ENSMODG00000019818	ENSMODG00000046954	ENSMODG00000019816	ENSMODG00000027670	ENSMODG00000019815	ENSMODG00000019813	ENSMODG00000019817	ENSMODG00000023061	ENSMODG00000019812	ENSMODG00000050218	ENSMODG00000038381	ENSMODG00000019811	ENSMODG00000008527	ENSMODG00000051245 #22	ENSMODG00000011141	SLC2A8 (ENSMODG00000019809)	GARNL3 (ENSMODG00000019806)	ANGPTL2 (ENSMODG00000019796)	ENSMODG00000037361	ENSMODG00000038042	RALGPS1 (ENSMODG00000019794)	ENSMODG00000023571	ZBTB43 (ENSMODG00000019790)	LMX1B (ENSMODG00000019789)	MVB12B (ENSMODG00000019787)	ENSMODG00000039977	PBX3 (ENSMODG00000019785)	ENSMODG00000049965	MAPKAP1 (ENSMODG00000019775)
Sauria	ANCESTRAL SPECIES	80													ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.t ##29	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.s.a ##29	ENSGT00940000153588.b #31
Archelosauria	ANCESTRAL SPECIES	109													ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22
Cryptodira	ANCESTRAL SPECIES	140													ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22
Testudinoidea	ANCESTRAL SPECIES	51	ENSGT00940000160765	ENSGT00940000155445	ENSGT00940000161880	ENSGT00940000153588.b #31	ENSGT00390000003897.s.a ##29	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.C ##24	ENSGT01050000244850.A.a.g #23	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22	ENSGT00940000165180	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000000950.c.a
Testudinidae	ANCESTRAL SPECIES	82	ENSGT00940000160765	ENSGT00940000155445	ENSGT00940000161880	ENSGT00390000003937	ENSGT00940000153588.b #31	ENSGT00390000003897.s.a ##29	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.C ##24	ENSGT01050000244850.A.a.g #23	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22	ENSGT00940000165180.g	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000000950.c.a
Goode s thornscrub tortoise	MODERN SPECIES	208							ATP6AP1 (ENSGEVG00005018411) #26	GDI1 (ENSGEVG00005018455) #25	ENSGEVG00005018472 ##24	ENSGEVG00005018491 #23	ENSGEVG00005014046 #23	ENSGEVG00005014125 #23	ENSGEVG00005014169 #19	SLC10A3 (ENSGEVG00005014243) #20	UBL4A (ENSGEVG00005014261) #21	ENSGEVG00005014282 #22	ENSGEVG00005014307	ENSGEVG00005014400	G6PD (ENSGEVG00005014601) #18	IKBKG (ENSGEVG00005014647) #17
Abingdon island giant tortoise	MODERN SPECIES	584													FAM3A (ENSCABG00000001400) #19	SLC10A3 (ENSCABG00000001402) #20	UBL4A (ENSCABG00000001404) #21	ENSCABG00000001405 #22	ENSCABG00000001413	ENSCABG00000001605	G6PD (ENSCABG00000001607) #18	IKBKG (ENSCABG00000001611) #17	SEPHS2 (ENSCABG00000001616)
Emydidae	ANCESTRAL SPECIES	99			ENSGT00940000160765	ENSGT00940000155445	ENSGT00940000161880	ENSGT00940000153588.b #31	ENSGT00390000003897.s.a ##29	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000018621 #27	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #25	ENSGT00390000004735.C ##24	ENSGT01050000244850.A.a.g #23	ENSGT00950000182808.b.b #20	ENSGT00730000111022 #21	ENSGT00410000025802 #22	ENSGT00940000165180.i	ENSGT00530000063435.a #18	ENSGT00530000063808.a #17	ENSGT00390000000950.c.a
painted turtle	MODERN SPECIES	1100	CCNQ (ENSCPBG00000015958)	DUSP9 (ENSCPBG00000015962)	FLNA (ENSCPBG00000015968) #31	ENSCPBG00000015988 ##29	ENSCPBG00000015995	DNASE1L1 (ENSCPBG00000015997) #28	TAFAZZIN (ENSCPBG00000016003) #27	ATP6AP1 (ENSCPBG00000016015) #26	GDI1 (ENSCPBG00000016047) #25	ENSCPBG00000017165 ##24	ENSCPBG00000017169 #23	ENSCPBG00000017177 #23	ENSCPBG00000017179 ##23	FAM3A (ENSCPBG00000017182) #19	UBL4A (ENSCPBG00000017185) #21	ENSCPBG00000017187 #22	ENSCPBG00000017191	ENSCPBG00000017205	G6PD (ENSCPBG00000017207) #18	IKBKG (ENSCPBG00000017209) #17	SEPHS2 (ENSCPBG00000017210)	ENSCPBG00000017211	ENSCPBG00000017213	ENSCPBG00000017215	ENSCPBG00000017216	ENSCPBG00000017217	ENSCPBG00000017218	IDH3G (ENSCPBG00000017224)	L1CAM (ENSCPBG00000017650)
Lepidosauria	ANCESTRAL SPECIES	38	ENSGT00530000063540.a	ENSGT00950000182835.c.c	ENSGT00940000163627	ENSGT00940000162980	ENSGT00940000160145.b	ENSGT00390000012692	ENSGT00940000159438	ENSGT00940000155877	ENSGT00900000142661.a	ENSGT00940000156319	ENSGT00940000165056	ENSGT00940000164196	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022.m #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.t ##29	ENSGT00950000182989.D.a.a	ENSGT00940000157877.b	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00950000182955.a.b.a	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000162187
Episquamata	ANCESTRAL SPECIES	23						ENSGT00940000160145.b	ENSGT00390000012692	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000156319	ENSGT00940000165056	ENSGT00940000164196	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022.m #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.t ##29	ENSGT00950000182989.D.a.a	ENSGT00940000157877.b	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00950000182955.a.b.a	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000162187
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00950000182835.c.c	ENSGT00940000163627	ENSGT00940000162980	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000156319	ENSGT00940000165056	ENSGT00940000164196	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022.m #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.t ##29	ENSGT00950000182989.D.a.a	ENSGT00940000157877.b	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00950000182955.a.b.a	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000162187
Elapidae	ANCESTRAL SPECIES	21	ENSGT00950000182835.c.c	ENSGT00940000163627	ENSGT00940000162980.a	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000156319.l	ENSGT00940000165056	ENSGT00940000164196	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022.m #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.t ##29	ENSGT00950000182989.D.a.a	ENSGT00940000157877.b	ENSGT01020000230394.e.a.a.b.a.b.b	ENSGT00950000182955.a.b.a	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000162187
Elapidae_a	ANCESTRAL SPECIES	23	ENSGT00950000182835.c.c	ENSGT00940000163627	ENSGT00940000162980.a	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000156319.l	ENSGT00940000165056	ENSGT00940000164196	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022.m #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.t ##29	ENSGT00950000182989.D.a.a	ENSGT00940000157877.b	ENSGT01020000230394.e.a.a.b.a.b.b	ENSGT00950000182955.a.b.a.e	ENSGT00950000182955.a.b.a.f	ENSGT00390000011863.c	ENSGT00940000155869
Acanthophiinae	ANCESTRAL SPECIES	23	ENSGT00950000182835.c.c	ENSGT00940000163627	ENSGT00940000162980.a	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000156319.l	ENSGT00940000165056	ENSGT00940000164196	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022.m #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00950000182846.a.a.a.a.b ##28	ENSGT00390000003897.t ##29	ENSGT00950000182989.D.a.a	ENSGT00940000157877.b	ENSGT01020000230394.e.a.a.b.a.b.b	ENSGT00950000182955.a.b.a.e	ENSGT00950000182955.a.b.a.f	ENSGT00390000011863.c	ENSGT00940000155869
Eastern brown snake	MODERN SPECIES	52	APEX2 (ENSPTXG00000007903)	PFKFB1 (ENSPTXG00000007895)	ENSPTXG00000007890	ITIH6 (ENSPTXG00000007849)	PHF8 (ENSPTXG00000007848)	WNK3 (ENSPTXG00000007846)	TSR2 (ENSPTXG00000007843)	FGD1 (ENSPTXG00000006759)	GNL3L (ENSPTXG00000006749)	HUWE1 (ENSPTXG00000006728)	ENSPTXG00000006712	ENSPTXG00000006711	FAM3A (ENSPTXG00000006710) #19	SLC10A3 (ENSPTXG00000006709) #20	UBL4A (ENSPTXG00000006707) #21	ENSPTXG00000006706 #22	PLXNA3 (ENSPTXG00000006595) #23	ENSPTXG00000006594 ##24	GDI1 (ENSPTXG00000006593) #25	ATP6AP1 (ENSPTXG00000006592) #26	TAFAZZIN (ENSPTXG00000006591) #27	DNASE1L1 (ENSPTXG00000006590) #28	ENSPTXG00000006589 ##28	ENSPTXG00000007999 ##29	IDH3G (ENSPTXG00000007998)	SRPK3 (ENSPTXG00000007997)	PLXNB3 (ENSPTXG00000005731)	ENSPTXG00000005713	ENSPTXG00000005712	BCAP31 (ENSPTXG00000005711)	ENSPTXG00000005710
Mainland tiger snake	MODERN SPECIES	81	PFKFB1 (ENSNSUG00000019752)	ENSNSUG00000019751	ITIH6 (ENSNSUG00000019750)	PHF8 (ENSNSUG00000019749)	FAM120C (ENSNSUG00000019748)	WNK3 (ENSNSUG00000019747)	TSR2 (ENSNSUG00000019746)	FGD1 (ENSNSUG00000019745)	GNL3L (ENSNSUG00000019744)	HUWE1 (ENSNSUG00000018906)	ENSNSUG00000018905	ENSNSUG00000015779	FAM3A (ENSNSUG00000015740) #19	SLC10A3 (ENSNSUG00000015739) #20	UBL4A (ENSNSUG00000015738) #21	ENSNSUG00000015737 #22	ENSNSUG00000015736 #23	ENSNSUG00000015735 #23	ENSNSUG00000015733 ##24	GDI1 (ENSNSUG00000015732) #25	ATP6AP1 (ENSNSUG00000015714) #26	TAFAZZIN (ENSNSUG00000015706) #27	DNASE1L1 (ENSNSUG00000015705) #28	ENSNSUG00000015704 ##28	ENSNSUG00000015702 ##29	IDH3G (ENSNSUG00000015701)	SRPK3 (ENSNSUG00000015700)	ENSNSUG00000015699	ENSNSUG00000015698	ENSNSUG00000015697	ENSNSUG00000015696
Blue-lipped sea krait	MODERN SPECIES	1466														SLC10A3 (ENSLLTG00000012606) #20	UBL4A (ENSLLTG00000012600) #21	ENSLLTG00000012596 #22
Indian cobra	MODERN SPECIES	1	ENSNNAG00000013761	ENSNNAG00000013810	PHF8 (ENSNNAG00000013830)	FAM120C (ENSNNAG00000013861)	WNK3 (ENSNNAG00000013960)	TSR2 (ENSNNAG00000014165)	FGD1 (ENSNNAG00000014192)	ENSNNAG00000014231	GNL3L (ENSNNAG00000014245)	HUWE1 (ENSNNAG00000014942)	ENSNNAG00000018596	ENSNNAG00000018634	FAM3A (ENSNNAG00000018651) #19	SLC10A3 (ENSNNAG00000018658) #20	UBL4A (ENSNNAG00000018662) #21	ENSNNAG00000018664 #22	ENSNNAG00000018666 #23	ENSNNAG00000018668 #23	ENSNNAG00000018671 ##24	GDI1 (ENSNNAG00000018677) #25	ATP6AP1 (ENSNNAG00000018685) #26	TAFAZZIN (ENSNNAG00000018691) #27	DNASE1L1 (ENSNNAG00000018696) #28	ENSNNAG00000018704 ##29	IDH3G (ENSNNAG00000018712)	ENSNNAG00000018721	ENSNNAG00000018733	ENSNNAG00000018745	ENSNNAG00000004602	ENSNNAG00000004620	ABCD1 (ENSNNAG00000004643)
Lizard	MODERN SPECIES		PHF8 (ENSACAG00000011904)	FAM120C (ENSACAG00000012139)	WNK3 (ENSACAG00000012261)	TSR2 (ENSACAG00000012270)	FGD1 (ENSACAG00000012290)	GNL3L (ENSACAG00000012525)	ENSACAG00000042765	ENSACAG00000036892	ENSACAG00000004234	ENSACAG00000023284	ENSACAG00000004622	ENSACAG00000004854	FAM3A (ENSACAG00000004999) #19	SLC10A3 (ENSACAG00000005038) #20	UBL4A (ENSACAG00000043371) #21	ENSACAG00000034714 #22	PLXNA3 (ENSACAG00000005063) #23	ENSACAG00000005285 ##24	CCN2 (ENSACAG00000000985)	ENPP1 (ENSACAG00000001235)	ENPP3 (ENSACAG00000001394)	MED23 (ENSACAG00000001630)	ENSACAG00000001836	ENSACAG00000040502	AKAP7 (ENSACAG00000001820)	FUCA2 (ENSACAG00000008062)	PEX3 (ENSACAG00000008093)	ADAT2 (ENSACAG00000028361)	ENSACAG00000029347	ENSACAG00000035407	ENSACAG00000044016
Laterata	ANCESTRAL SPECIES	7	ENSGT00530000063540.a	ENSGT00950000182835.c.c	ENSGT00940000162980	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000156319	ENSGT00940000165056	ENSGT00940000164196	ENSGT00950000183004.a.a.a.b #19	ENSGT00950000182808.b.b #20	ENSGT00730000111022.m #21	ENSGT00410000025802 #22	ENSGT01050000244850.A.a #23	ENSGT00390000004735.C ##24	ENSGT00950000182994.B.a.a.a #25	ENSGT00940000156650 #26	ENSGT00390000018621 #27	ENSGT00950000182846.a.a.a.a.a #28	ENSGT00390000003897.t ##29	ENSGT00950000182989.D.a.a	ENSGT00940000157877.b	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00950000182955.a.b.a	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000162187	ENSGT00940000161880
Common wall lizard	DUPLICATION
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	8	ENSPMRG00000021797	TEX28 (ENSPMRG00000021784) #33	ENSPMRG00000021772 #34	ENSPMRG00000021757 ##34	MECP2 (ENSPMRG00000021754) #35	IRAK1 (ENSPMRG00000021661) #36	TMEM187 (ENSPMRG00000021643) #37	HCFC1 (ENSPMRG00000021629)	ENSPMRG00000021615	RENBP (ENSPMRG00000021609)	NAA10 (ENSPMRG00000021587)	ARHGAP4 (ENSPMRG00000021373)	CAV3 (ENSPMRG00000021320)	ENSPMRG00000021311	AVPR2 (ENSPMRG00000021305)	ENSPMRG00000021296 #22	ENSPMRG00000021287	L1CAM (ENSPMRG00000021230)	PDZD4 (ENSPMRG00000021208)	SSR4 (ENSPMRG00000021193)	ENSPMRG00000021190	FLNA (ENSPMRG00000021086) #31	HAUS7 (ENSPMRG00000021057)	BGN (ENSPMRG00000021052)	ATP2B3 (ENSPMRG00000023951)	CCNQ (ENSPMRG00000023950)	DUSP9 (ENSPMRG00000023948)	PNCK (ENSPMRG00000023947)	ENSPMRG00000023946	BCAP31 (ENSPMRG00000023945)	ABCD1 (ENSPMRG00000023944)
Common wall lizard	MODERN SPECIES	8	PFKFB1 (ENSPMRG00000019509)	ITIH6 (ENSPMRG00000020797)	PHF8 (ENSPMRG00000021005)	FAM120C (ENSPMRG00000021045)	WNK3 (ENSPMRG00000021103)	ENSPMRG00000021178	TSR2 (ENSPMRG00000021183)	FGD1 (ENSPMRG00000021196)	GNL3L (ENSPMRG00000021260)	HUWE1 (ENSPMRG00000022312)	ENSPMRG00000023721	ENSPMRG00000023792	SLC10A3 (ENSPMRG00000023887) #20	ENSPMRG00000023888	ENSPMRG00000023889	ENSPMRG00000023891 #22	ENSPMRG00000023892	PLXNA3 (ENSPMRG00000023922) #23	ENSPMRG00000023934 ##24	GDI1 (ENSPMRG00000023935) #25	ATP6AP1 (ENSPMRG00000023936) #26	TAFAZZIN (ENSPMRG00000023937) #27	DNASE1L1 (ENSPMRG00000023938) #28	ENSPMRG00000023939 ##29	IDH3G (ENSPMRG00000023941)	SRPK3 (ENSPMRG00000023942)	PLXNB3 (ENSPMRG00000023943)	ABCD1 (ENSPMRG00000023944)	BCAP31 (ENSPMRG00000023945)	ENSPMRG00000023946	PNCK (ENSPMRG00000023947)
Common wall lizard	MODERN SPECIES	8	ENSPMRG00000018568	ENSPMRG00000018574	ENSPMRG00000018579	ENSPMRG00000018585	ENSPMRG00000018587	ENSPMRG00000018593	ABT1 (ENSPMRG00000018603)	GRM6 (ENSPMRG00000018607)	ENSPMRG00000018623	WDR13 (ENSPMRG00000018635)	SUV39H1 (ENSPMRG00000018649)	WAS (ENSPMRG00000018659)	ENSPMRG00000018667	SLC38A5 (ENSPMRG00000018673)	ENSPMRG00000018683	ENSPMRG00000018690 #22	EBP (ENSPMRG00000018698)	PORCN (ENSPMRG00000018707)	ENSPMRG00000018717	FTSJ1 (ENSPMRG00000018723)	GPKOW (ENSPMRG00000018732)	WDR45 (ENSPMRG00000018757)	PRAF2 (ENSPMRG00000018857)	ENSPMRG00000018863	CCDC120 (ENSPMRG00000018879)	TFE3 (ENSPMRG00000018894)	GRIPAP1 (ENSPMRG00000018908)	ENSPMRG00000018926	SLC35A2 (ENSPMRG00000018937)	OTUD5 (ENSPMRG00000018946)	PIM2 (ENSPMRG00000018956)
Argentine black and white tegu	MODERN SPECIES	12	ENSSMRG00000019204	ITIH6 (ENSSMRG00000019135)	PHF8 (ENSSMRG00000019134)	FAM120C (ENSSMRG00000019133)	SSR4 (ENSSMRG00000019131)	WNK3 (ENSSMRG00000019129)	TSR2 (ENSSMRG00000019128)	FGD1 (ENSSMRG00000019064)	GNL3L (ENSSMRG00000019063)	HUWE1 (ENSSMRG00000003040)	ENSSMRG00000002927	ENSSMRG00000002878	FAM3A (ENSSMRG00000002877) #19	SLC10A3 (ENSSMRG00000002876) #20	UBL4A (ENSSMRG00000002875) #21	ENSSMRG00000002873 #22	PLXNA3 (ENSSMRG00000002851) #23	ENSSMRG00000002783 ##24	GDI1 (ENSSMRG00000002779) #25	ATP6AP1 (ENSSMRG00000002776) #26	TAFAZZIN (ENSSMRG00000002769) #27	DNASE1L1 (ENSSMRG00000002768) #28	ENSSMRG00000002764 ##29	IDH3G (ENSSMRG00000002761)	SRPK3 (ENSSMRG00000002758)	PLXNB3 (ENSSMRG00000002754)	ABCD1 (ENSSMRG00000002654)	BCAP31 (ENSSMRG00000002653)	ENSSMRG00000002650	PNCK (ENSSMRG00000002638)	DUSP9 (ENSSMRG00000002591)
Anura	ANCESTRAL SPECIES	214																ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00390000015154	ENSGT00940000158528	ENSGT00940000153629.a.b	ENSGT01030000234637.b.c	ENSGT00940000159855	ENSGT00390000003809	ENSGT00940000161807	ENSGT00890000139436.A.b	ENSGT00940000162821	ENSGT00940000165056	ENSGT00940000164196	ENSGT00940000159667	ENSGT01100000265223
Leishan spiny toad	MODERN SPECIES	12	PIP5KL1 (ENSLLEG00000013344)	PTRH1 (ENSLLEG00000013276)	ENSLLEG00000013224	ENSLLEG00000013192	TOR2A (ENSLLEG00000013157)	SH2D3C (ENSLLEG00000012951)	ENSLLEG00000012920	CDK9 (ENSLLEG00000012868)	FPGS (ENSLLEG00000012690)	ENSLLEG00000012633	ENSLLEG00000012451	ENSLLEG00000012167	ST6GALNAC6 (ENSLLEG00000012104)	HSD17B10 (ENSLLEG00000012065)	ENSLLEG00000011981	ENSLLEG00000011933 #22	WDR45 (ENSLLEG00000010461)	GPKOW (ENSLLEG00000010113)	PLP2 (ENSLLEG00000010038)	PRICKLE3 (ENSLLEG00000009973)	ENSLLEG00000009920	CACNA1F (ENSLLEG00000009525)	CCDC22 (ENSLLEG00000009170)	FOXP3 (ENSLLEG00000009066)	GPR173 (ENSLLEG00000009020)	ENSLLEG00000008949	ENSLLEG00000008921	ENSLLEG00000008372	ENSLLEG00000008312	ENSLLEG00000030664	ENSLLEG00000030661
Frog	MODERN SPECIES		ENSXETG00000047391	amh (ENSXETG00000035043)	sf3a2 (ENSXETG00000024943)	plekhj1 (ENSXETG00000048490)	dot1l (ENSXETG00000013658)	ENSXETG00000040168	ap3d1 (ENSXETG00000013663)	mob3a (ENSXETG00000045515)	mknk2 (ENSXETG00000013667)	btbd2 (ENSXETG00000006432)	csnk1g2 (ENSXETG00000006434)	ENSXETG00000006435	ENSXETG00000047701	ENSXETG00000042402	ankle1 (ENSXETG00000039453)	lage3 (ENSXETG00000035818) #22	wdr24 (ENSXETG00000006438)	enc1.2 (ENSXETG00000006439)	ENSXETG00000046593	pex11g (ENSXETG00000040850)	b4galt1l (ENSXETG00000039246)	ENSXETG00000043096	lsm4 (ENSXETG00000024933)	pde4c (ENSXETG00000012922)	rab3a (ENSXETG00000038978)	ENSXETG00000044189	ENSXETG00000041211	mpv17l2 (ENSXETG00000018317)	ifi30 (ENSXETG00000025512)	pik3r2 (ENSXETG00000012933)	mast3 (ENSXETG00000012935)
Actinopterygii	ANCESTRAL SPECIES	780																ENSGT00410000025802 #22	ENSGT00940000155864.b	ENSGT00940000155657
Neopterygii	ANCESTRAL SPECIES	469														ENSGT00940000166050	ENSGT00940000154704.c	ENSGT00410000025802 #22	ENSGT00940000155864.b.c.b	ENSGT00940000155657
Spotted gar	MODERN SPECIES	647	ENSLOCG00000015626	ENSLOCG00000015625	ENSLOCG00000015623	polb (ENSLOCG00000015620)	enkd1 (ENSLOCG00000015619)	zgc:56235 (ENSLOCG00000015616)	ikbkb (ENSLOCG00000015613)	PLAT (ENSLOCG00000015608)	ap3m2 (ENSLOCG00000015606)	kat6a (ENSLOCG00000015602)	ENSLOCG00000015599	ENSLOCG00000015598	sema4c (ENSLOCG00000015594)	ENSLOCG00000015588	ENSLOCG00000015583	ENSLOCG00000015581 #22	zgc:56596 (ENSLOCG00000015578) #21	zgc:100918 (ENSLOCG00000015576)	wdr45 (ENSLOCG00000015571)	ENSLOCG00000015567	ENSLOCG00000015565	tktb (ENSLOCG00000015562)	ENSLOCG00000015560	ENSLOCG00000015558	ENSLOCG00000015557	ENSLOCG00000015554	HAUS7 (ENSLOCG00000015550)	atp2b3a (ENSLOCG00000015538)	ccnq (ENSLOCG00000015536)	DUSP9 (ENSLOCG00000015534)	ENSLOCG00000015533
Osteoglossocephalai	ANCESTRAL SPECIES	64	ENSGT00940000160296	ENSGT00720000108860	ENSGT01100000263540.B.d	ENSGT00940000158607	ENSGT00940000160930	ENSGT00940000157556.b	ENSGT00390000005989.b.a	ENSGT00940000164380.a	ENSGT00940000158918	ENSGT00940000162387	ENSGT00940000160355	ENSGT00950000182882.B	ENSGT00940000166050	ENSGT00940000154704.c.d	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00730000111022 #21	ENSGT00940000155864.b.c.b	ENSGT00940000165180	ENSGT00940000157931	ENSGT00940000157176.a	ENSGT00940000156522.c.a	ENSGT00940000158488	ENSGT00940000164785	ENSGT00940000155968.d.b	ENSGT00940000158663.c	ENSGT00940000158941	ENSGT00940000160418	ENSGT00940000160558	ENSGT00940000157079.b	ENSGT00940000160545
Osteoglossiformes	ANCESTRAL SPECIES	188	ENSGT00940000159868.b	ENSGT00940000156168.B	ENSGT00940000155847	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.b.e	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00390000009948.d	ENSGT00940000155782.f	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00940000160296.j	ENSGT00390000005989.b.b	ENSGT00940000160355.j	ENSGT00410000025802 #22	ENSGT00940000155864.b.c.b.b	ENSGT00940000155657	ENSGT00940000167013	ENSGT00940000157176.b	ENSGT01070000253744.b.a.a.b	ENSGT00390000007636	ENSGT00940000156522.c.b	ENSGT00940000155968.d.a	ENSGT00940000156575.q	ENSGT00940000158663.d	ENSGT00940000164214.j	ENSGT00390000002288	ENSGT00940000159649
Asian bonytongue	MODERN SPECIES	21	ENSSFOG00015004317	ENSSFOG00015025286	ENSSFOG00015004391	tcf7l1a (ENSSFOG00015004425)	ENSSFOG00015026787	DBNL (ENSSFOG00015004574)	cox5ba (ENSSFOG00015004590)	npy8ar (ENSSFOG00015004598)	marchf5l (ENSSFOG00015004657)	actr1b (ENSSFOG00015004696)	kctd9b (ENSSFOG00015027589)	FGFR1 (ENSSFOG00015004798)	LGI3 (ENSSFOG00015004854)	stc1l (ENSSFOG00015004886)	EGR3 (ENSSFOG00015005057)	ENSSFOG00015005099 #22	ENSSFOG00015027500	wdr45 (ENSSFOG00015005109)	trim69 (ENSSFOG00015005155)	bmp1b (ENSSFOG00015005207)	npffr1l1 (ENSSFOG00015005257)	kansl3 (ENSSFOG00015005292)	ANTXR1 (ENSSFOG00015005385)	ENSSFOG00015032766	AAK1 (ENSSFOG00015005439)	anxa4 (ENSSFOG00015005468)	adrb3b (ENSSFOG00015005507)	ENSSFOG00015029441	brf2 (ENSSFOG00015025268)	ENSSFOG00015005609	ENSSFOG00015005626
P. kingsleyae	MODERN SPECIES	324							ENSPKIG00000021398	fpgs (ENSPKIG00000021358)	cdk9 (ENSPKIG00000021317)	ENSPKIG00000021293	ENSPKIG00000021277	ENSPKIG00000021240	CRB2 (ENSPKIG00000021213)	ENSPKIG00000021192	EGR3 (ENSPKIG00000021178)	ENSPKIG00000021166 #22	ENSPKIG00000021143	wdr45 (ENSPKIG00000021102)	trim69 (ENSPKIG00000021074)	bmp1b (ENSPKIG00000021030)	npffr1l1 (ENSPKIG00000021008)	kansl3 (ENSPKIG00000020921)	ANTXR1 (ENSPKIG00000020856)	AAK1 (ENSPKIG00000020694)	anxa4 (ENSPKIG00000020622)	adrb3b (ENSPKIG00000020608)	ENSPKIG00000020596	brf2 (ENSPKIG00000020580)	ENSPKIG00000020560	PDLIM2 (ENSPKIG00000020534)	ENSPKIG00000020513
Clupeocephala	ANCESTRAL SPECIES	80	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00940000155068.b	ENSGT00940000153710.a	ENSGT00530000064712	ENSGT00940000157038.a.a	ENSGT00940000160915	ENSGT00940000156732.a.b	ENSGT00940000161253	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155864.b.c.a	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000160328	ENSGT00390000000924	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000157995	ENSGT00940000156031.f	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866	ENSGT00940000160516
Euteleosteomorpha	ANCESTRAL SPECIES	93	ENSGT00940000155847	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00940000154314.b	ENSGT00760000119772	ENSGT00940000161587	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155864.b.c.a	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000160328	ENSGT00390000000924	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000157995	ENSGT00940000156031.f	ENSGT00940000159913.a.b
Acanthomorphata	ANCESTRAL SPECIES	15	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866	ENSGT00940000160516
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Percomorphaceae	ANCESTRAL SPECIES	54	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000158107.a.a	ENSGT00550000074946	ENSGT00940000158323.g	ENSGT00940000166967	ENSGT00390000010474	ENSGT00940000164321.d	ENSGT00940000153372.B	ENSGT00940000153745.a.b	ENSGT00940000157488.h	ENSGT00940000158873	ENSGT00940000158067.b	ENSGT00940000157699	ENSGT00940000160372	ENSGT00940000160516	ENSGT00940000158866
Fugu	MODERN SPECIES	18	ENSTRUG00000032753	ENSTRUG00000030281	ENSTRUG00000033476	GFRA2 (ENSTRUG00000018638)	ATP6V1B2 (ENSTRUG00000018637)	ENSTRUG00000018635	tcf7l1a (ENSTRUG00000018634)	dbnla (ENSTRUG00000018633)	npy8ar (ENSTRUG00000018631)	actr1b (ENSTRUG00000018630)	marchf5l (ENSTRUG00000018629)	kctd9b (ENSTRUG00000018628)	FGFR1 (ENSTRUG00000018627)	stc1l (ENSTRUG00000024380)	ENSTRUG00000031736	lage3 (ENSTRUG00000031967) #22	DUSP26 (ENSTRUG00000026163)	ddx56 (ENSTRUG00000018623)	aebp1a (ENSTRUG00000018622)	pnx (ENSTRUG00000018621)	ash2l (ENSTRUG00000018620)	grk5 (ENSTRUG00000018619)	scarb1 (ENSTRUG00000018618)	ENSTRUG00000018617	SLC4A5 (ENSTRUG00000018616)	ENSTRUG00000027589	SEZ6L (ENSTRUG00000018614)	grk3 (ENSTRUG00000018612)	cryba4 (ENSTRUG00000018611)	crybb1 (ENSTRUG00000023380)	acads (ENSTRUG00000018610)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c.j	ENSGT00940000154704.c.c.i.b	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Ballan wrasse	MODERN SPECIES	2842															ENSLBEG00000018577	ENSLBEG00000018554 #22	ENSLBEG00000018542
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c.j	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000161587	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c.j	ENSGT00940000154704.c.c.i.b	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866	ENSGT00940000160516
Lumpfish	MODERN SPECIES	3	cdc26 (ENSCLMG00005012361)	FER (ENSCLMG00005011862)	ENSCLMG00005011856	pisd (ENSCLMG00005011840)	ENSCLMG00005011838	ythdc1 (ENSCLMG00005011777)	UFC1 (ENSCLMG00005011774)	fktn (ENSCLMG00005011771)	ENSCLMG00005011770	apc (ENSCLMG00005011768)	ENSCLMG00005011767	ENSCLMG00005011764	FGFR1 (ENSCLMG00005002272)	stc1l (ENSCLMG00005002205)	ENSCLMG00005001829	ENSCLMG00005001812 #22	wdr45 (ENSCLMG00005001793)	ENSCLMG00005001790	zcchc9 (ENSCLMG00005001786)	ENSCLMG00005001783	xrcc4 (ENSCLMG00005001782)	ENSCLMG00005001776	ENSCLMG00005001771	HAPLN1 (ENSCLMG00005001767)	cetn3 (ENSCLMG00005001749)	ENSCLMG00005001743	ENSCLMG00005001740	ENSCLMG00005001734	MCTP1 (ENSCLMG00005001437)	SEPTIN5 (ENSCLMG00005001322)	cldn5b (ENSCLMG00005019596)
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000161587	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c.i.a	ENSGT00940000154704.c.c.i.b	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866	ENSGT00940000160516
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c.j	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
European seabass	MODERN SPECIES	9	ENSDLAG00005005206	ENSDLAG00005028281	ENSDLAG00005027491	ENSDLAG00005030051	ENSDLAG00005013228	ENSDLAG00005028870	ENSDLAG00005030936	ENSDLAG00005033783	ENSDLAG00005018734	ENSDLAG00005031245	ENSDLAG00005016549	ENSDLAG00005005418	ENSDLAG00005024555	stc1l (ENSDLAG00005030747)	ENSDLAG00005024818	ENSDLAG00005027684 #22	ENSDLAG00005033894	wdr45 (ENSDLAG00005033401)	ENSDLAG00005030927	zcchc9 (ENSDLAG00005032239)	ENSDLAG00005034259	ENSDLAG00005027110	xrcc4 (ENSDLAG00005031519)	ENSDLAG00005026579	ENSDLAG00005028928	ENSDLAG00005032280	ENSDLAG00005004748	ENSDLAG00005033764	ENSDLAG00005030028	ENSDLAG00005002784	ENSDLAG00005021837
Gilthead seabream	MODERN SPECIES	3	nln (ENSSAUG00010017910)	erbin (ENSSAUG00010016766)	srek1 (ENSSAUG00010016735)	ENSSAUG00010016733	MAST4 (ENSSAUG00010016507)	pik3r1 (ENSSAUG00010016157)	ENSSAUG00010013823	TRAF2 (ENSSAUG00010013701)	ENSSAUG00010013698	ZNF703 (ENSSAUG00010013696)	C2orf42 (ENSSAUG00010013693)	tia1 (ENSSAUG00010013687)	DTWD2 (ENSSAUG00010013685)	ENSSAUG00010013684	ENSSAUG00010013008	ENSSAUG00010012981 #22	wdr45 (ENSSAUG00010012961)	adra2b (ENSSAUG00010012953)	ENSSAUG00010012950	ENSSAUG00010012943	agxt2 (ENSSAUG00010012938)	agxt2 (ENSSAUG00010012910)	prlra (ENSSAUG00010012906)	NEDD4L (ENSSAUG00010011411)	ENSSAUG00010011402	ENSSAUG00010011398	ZNF532 (ENSSAUG00010011298)	ENSSAUG00010011292	rx3 (ENSSAUG00010011291)	cplx4a (ENSSAUG00010011290)	lman1 (ENSSAUG00010011264)
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Turbot	MODERN SPECIES	7	NAIF1 (ENSSMAG00000010261)	slc25a25b (ENSSMAG00000010217)	uap1l1 (ENSSMAG00000010208)	zdhhc12b (ENSSMAG00000010199)	ENSSMAG00000010189	SET (ENSSMAG00000010018)	dync2i2 (ENSSMAG00000010007)	SPTAN1 (ENSSMAG00000009496)	ODF2 (ENSSMAG00000009452)	ENSSMAG00000009433	kctd9b (ENSSMAG00000009386)	ENSSMAG00000028483	ENSSMAG00000009342	stc1l (ENSSMAG00000009300)	ENSSMAG00000009265	ENSSMAG00000034455 #22	wdr45 (ENSSMAG00000009227)	ENSSMAG00000009215	ENSSMAG00000009197	ENSSMAG00000034909	ENSSMAG00000009168	ENSSMAG00000009165	ENSSMAG00000021812	ENSSMAG00000009149	ENSSMAG00000036211	xpo7 (ENSSMAG00000032317)	pbdc1 (ENSSMAG00000029601)	dmtn (ENSSMAG00000024114)	ENSSMAG00000031785	ENSSMAG00000038004	HELQ (ENSSMAG00000031179)
Seriola	ANCESTRAL SPECIES	105	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Greater amberjack	MODERN SPECIES	56	xpo7 (ENSSDUG00000005593)	GFRA2 (ENSSDUG00000005698)	ATP6V1B2 (ENSSDUG00000005723)	dusp11 (ENSSDUG00000005769)	ENSSDUG00000005783	tcf7l1a (ENSSDUG00000005791)	ENSSDUG00000005814	COX5B (ENSSDUG00000005836)	npy8ar (ENSSDUG00000005843)	actr1b (ENSSDUG00000005857)	marchf5l (ENSSDUG00000005901)	kctd9b (ENSSDUG00000005927)	FGFR1 (ENSSDUG00000006005)	stc1l (ENSSDUG00000006072)	ENSSDUG00000006098	ENSSDUG00000006258 #22	wdr45 (ENSSDUG00000006281)	adra2b (ENSSDUG00000006330)	ENSSDUG00000006336	zcchc9 (ENSSDUG00000006368)	xrcc4 (ENSSDUG00000006407)	vcanb (ENSSDUG00000006416)	HAPLN1 (ENSSDUG00000006443)	cetn3 (ENSSDUG00000006474)	ENSSDUG00000006512	ENSSDUG00000006524	ENSSDUG00000006553	MCTP1 (ENSSDUG00000006563)	SEPTIN5 (ENSSDUG00000006594)	cldn5b (ENSSDUG00000006644)	acads (ENSSDUG00000006657)
Yellowtail amberjack	MODERN SPECIES	2981	xpo7 (ENSSLDG00000023456)	GFRA2 (ENSSLDG00000023415)	ATP6V1B2 (ENSSLDG00000023386)	dusp11 (ENSSLDG00000023362)	ENSSLDG00000023353	tcf7l1a (ENSSLDG00000022990)	ENSSLDG00000022942	COX5B (ENSSLDG00000022937)	npy8ar (ENSSLDG00000022933)	actr1b (ENSSLDG00000022912)	marchf5l (ENSSLDG00000022900)	kctd9b (ENSSLDG00000022883)	FGFR1 (ENSSLDG00000022856)	stc1l (ENSSLDG00000022843)	ENSSLDG00000022813	ENSSLDG00000022800 #22	wdr45 (ENSSLDG00000022765)	adra2b (ENSSLDG00000022710)	ENSSLDG00000022685	zcchc9 (ENSSLDG00000022676)	xrcc4 (ENSSLDG00000022642)	ENSSLDG00000022623	ENSSLDG00000022608	HAPLN1 (ENSSLDG00000022599)	ENSSLDG00000022583	cetn3 (ENSSLDG00000022563)	ENSSLDG00000022531
Barramundi perch	MODERN SPECIES	20	ENSLCAG00010022066	cetn3 (ENSLCAG00010022082)	ENSLCAG00010022091	HAPLN1 (ENSLCAG00010022094)	vcanb (ENSLCAG00010022103)	xrcc4 (ENSLCAG00010022123)	dbnla (ENSLCAG00010022130)	ENSLCAG00010022133	npy8ar (ENSLCAG00010022137)	actr1b (ENSLCAG00010022145)	marchf5l (ENSLCAG00010022158)	kctd9b (ENSLCAG00010022167)	FGFR1 (ENSLCAG00010022548)	stc1l (ENSLCAG00010023767)	ENSLCAG00010023778	LAGE3 (ENSLCAG00010023800) #22	wdr45 (ENSLCAG00010023819)	zcchc9 (ENSLCAG00010023853)	adra2b (ENSLCAG00010023857)	ENSLCAG00010023861	tcf7l1a (ENSLCAG00010023864)	ENSLCAG00010023868	ENSLCAG00010023872	dusp11 (ENSLCAG00010023875)	ATP6V1B2 (ENSLCAG00010023945)	GFRA2 (ENSLCAG00010024158)	xpo7 (ENSLCAG00010024218)
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00950000183041.C	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B
Zig-zag eel	MODERN SPECIES	3	xpo7 (ENSMAMG00000012156)	GFRA2 (ENSMAMG00000012126)	ENSMAMG00000012090	ENSMAMG00000012062	ENSMAMG00000012036	tcf7l1a (ENSMAMG00000012013)	dbnla (ENSMAMG00000011997)	ENSMAMG00000011987	npy8ar (ENSMAMG00000011965)	ENSMAMG00000011939	ENSMAMG00000011920	kctd9b (ENSMAMG00000011867)	ENSMAMG00000011845	stc1l (ENSMAMG00000011830)	ENSMAMG00000011745	ENSMAMG00000011730 #22	wdr45 (ENSMAMG00000011692)	ENSMAMG00000011688	zcchc9 (ENSMAMG00000011669)	ENSMAMG00000027573	ENSMAMG00000011638	ENSMAMG00000011624	ENSMAMG00000011609	ENSMAMG00000026801	ENSMAMG00000011595	ENSMAMG00000026904	ENSMAMG00000011413	ENSMAMG00000011400	ENSMAMG00000011386	ENSMAMG00000011374	ENSMAMG00000011343
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000157488.h	ENSGT00940000153745.a.b	ENSGT00940000153372.B	ENSGT00940000164321.d	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00550000074946	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00950000183041.C	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B
Climbing perch	MODERN SPECIES	3	ENSATEG00000005397	ENSATEG00000005387	scarb1 (ENSATEG00000005361)	grk5 (ENSATEG00000005347)	ash2l (ENSATEG00000005338)	pnx (ENSATEG00000029170)	aebp1a (ENSATEG00000005321)	ddx56 (ENSATEG00000005279)	ENSATEG00000029543	ENSATEG00000005097	ENSATEG00000005060	kctd9b (ENSATEG00000005017)	ENSATEG00000004876	stc1l (ENSATEG00000004849)	ENSATEG00000004589	ENSATEG00000029244 #22	wdr45 (ENSATEG00000004492)	ENSATEG00000004483	zcchc9 (ENSATEG00000004480)	ENSATEG00000025737	ENSATEG00000029687	ENSATEG00000004254	ENSATEG00000004231	ENSATEG00000004198	ENSATEG00000004189	ENSATEG00000004167	ENSATEG00000004144	ENSATEG00000026352	EIF2B1 (ENSATEG00000004100)	ddx55 (ENSATEG00000004029)	tmed2 (ENSATEG00000004001)
Siamese fighting fish	MODERN SPECIES	3	ENSBSLG00000002804	ENSBSLG00000002800	ENSBSLG00000002770	ENSBSLG00000002755	scarb1 (ENSBSLG00000002660)	grk5 (ENSBSLG00000002568)	ash2l (ENSBSLG00000002405)	pnx (ENSBSLG00000002310)	aebp1a (ENSBSLG00000002257)	ddx56 (ENSBSLG00000013161)	npy8ar (ENSBSLG00000013019)	actr1b (ENSBSLG00000013000)	marchf5l (ENSBSLG00000012982)	kctd9b (ENSBSLG00000012961)	stc1l (ENSBSLG00000012885)	ENSBSLG00000012883 #22	wdr45 (ENSBSLG00000012849)	ENSBSLG00000012843	zcchc9 (ENSBSLG00000012840)	kmt5aa (ENSBSLG00000012834)	RILPL1 (ENSBSLG00000012816)	HIP1R (ENSBSLG00000012702)	ccdc62 (ENSBSLG00000012688)	denr (ENSBSLG00000012674)	ENSBSLG00000012671	ENSBSLG00000012667	bcl7a (ENSBSLG00000012660)	eif2b1 (ENSBSLG00000012582)	ddx55 (ENSBSLG00000012490)	tmed2 (ENSBSLG00000012466)	ptpn11a (ENSBSLG00000012018)
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000156168.B	ENSGT00940000153139.B.a	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b	ENSGT00940000154115.d	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Aplocheiloidei	ANCESTRAL SPECIES	175									ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267
Turquoise killifish	MODERN SPECIES	1611	Nfu_g_1_015751 (ENSNFUG00015002183)	Nfu_g_1_015848 (ENSNFUG00015002188)	ENSNFUG00015002198	ENSNFUG00015002216	cryba4 (ENSNFUG00015002222)	crybb1 (ENSNFUG00015002228)	ACADS (ENSNFUG00015002283)	CLDN5B (ENSNFUG00015002406)	ENSNFUG00015002407	MCTP1 (ENSNFUG00015002453)	ARRDC3B (ENSNFUG00015002643)	ENSNFUG00015002658	CETN3 (ENSNFUG00015002676)	FGFR1 (ENSNFUG00015002730)	stc1l (ENSNFUG00015002825)	CABZ01063556.1 (ENSNFUG00015002830) #22	WDR45 (ENSNFUG00015002846)	ENSNFUG00015002867	ENSNFUG00015002870	ENSNFUG00015002876	zcchc9 (ENSNFUG00015002885)	XRCC4 (ENSNFUG00015002897)	ENSNFUG00015002903	HAPLN1B (ENSNFUG00015002911)	ENSNFUG00015000170	ENSNFUG00015000202	MARCH5L (ENSNFUG00015000239)	MVB12BA (ENSNFUG00015000254)	LMX1B (ENSNFUG00015000264)	ENSNFUG00015000275	nr5a1b (ENSNFUG00015000283)
Cyprinodontoidei	ANCESTRAL SPECIES	36	ENSGT00940000155847.c	ENSGT00940000155068.a.a	ENSGT00940000156168.B	ENSGT00940000153139.B.a	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b	ENSGT00940000154115.d	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802 #22	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945	ENSGT00940000156369	ENSGT00940000165329	ENSGT00950000183101.a.b.b.a.b	ENSGT00930000151016	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995
NAME_4	ANCESTRAL SPECIES	257											ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802 #22	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945	ENSGT00940000156369	ENSGT00950000183101.a.b.b.a.b	ENSGT00930000151016	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C
Mummichog	MODERN SPECIES	452										npy8ar (ENSFHEG00000011547)	actr1b (ENSFHEG00000011585)	marchf5l (ENSFHEG00000011630)	ENSFHEG00000011647	FGFR1 (ENSFHEG00000011699)	stc1l (ENSFHEG00000011730)	ENSFHEG00000011760 #22	reep5 (ENSFHEG00000011777)	ENSFHEG00000011807	ENSFHEG00000011840	pomk (ENSFHEG00000011853)	PAM (ENSFHEG00000011873)	ENSFHEG00000012090	fbxw2 (ENSFHEG00000012154)	wdr45 (ENSFHEG00000012212)	ENSFHEG00000012242	spata4 (ENSFHEG00000012255)	ENSFHEG00000012282	zcchc9 (ENSFHEG00000012337)
Sheepshead minnow	MODERN SPECIES	891															stc1l (ENSCVAG00000002722)	ENSCVAG00000002723 #22	reep5 (ENSCVAG00000002731)	ENSCVAG00000002733	ENSCVAG00000000082	ENSCVAG00000002741	pomk (ENSCVAG00000000084)	PAM (ENSCVAG00000002753)	ENSCVAG00000002799
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000155847.c	ENSGT00940000155068.a.a	ENSGT00940000156168.B	ENSGT00940000153139.B.a	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b	ENSGT00940000154115.d	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d.g	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802 #22	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945	ENSGT00940000156369	ENSGT00940000165329	ENSGT00950000183101.a.b.b.a.b	ENSGT00930000151016	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157492.a
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000155068.a.a	ENSGT00940000156168.B	ENSGT00940000153139.B.a	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b	ENSGT00940000154115.d	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.n	ENSGT00390000011010.a.a.m	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d.g	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802 #22	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945	ENSGT00940000156369	ENSGT00940000165329	ENSGT00950000183101.a.b.b.a.b	ENSGT00930000151016	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157492.a
Sailfin molly	MODERN SPECIES	218			xpo7 (ENSPLAG00000012688)	pbdc1 (ENSPLAG00000012728)	dmtn (ENSPLAG00000012761)	ppp3ccb (ENSPLAG00000012804)	hpse (ENSPLAG00000012813)	dbnla (ENSPLAG00000012851)	COX5B (ENSPLAG00000012868)	npy8ar (ENSPLAG00000012889)	actr1b (ENSPLAG00000012936)	marchf5l (ENSPLAG00000012957)	ENSPLAG00000012981	FGFR1 (ENSPLAG00000013010)	stc1l (ENSPLAG00000013025)	ENSPLAG00000013032 #22	reep5 (ENSPLAG00000000824)	ENSPLAG00000013068	ENSPLAG00000013114	pomk (ENSPLAG00000013128)	PAM (ENSPLAG00000000309)	ENSPLAG00000013158	fbxw2 (ENSPLAG00000013183)	wdr45 (ENSPLAG00000000314)	ENSPLAG00000013222	ENSPLAG00000013236
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00940000155101.e	ENSGT00950000183174.A
Japanese Medaka HdrR	MODERN SPECIES	3	dusp11 (ENSORLG00000023976)	ENSORLG00000023584	tcf7l1a (ENSORLG00000022421)	ENSORLG00000026012	ENSORLG00000022498	COX5B (ENSORLG00000019521)	ENSORLG00000024890	npy8ar (ENSORLG00000000273)	actr1b (ENSORLG00000025734)	marchf5l (ENSORLG00000000280)	kctd9b (ENSORLG00000000294)	ENSORLG00000000321	stc1l (ENSORLG00000000328)	ENSORLG00000000364	wdr45 (ENSORLG00000000386)	ENSORLG00000023258 #22	ENSORLG00000024105	zcchc9 (ENSORLG00000020135)	xrcc4 (ENSORLG00000022728)	vcanb (ENSORLG00000027367)	bcl7a (ENSORLG00000000400)	eif2b1 (ENSORLG00000000423)	ddx55 (ENSORLG00000029482)	ENSORLG00000030205	pla2g3 (ENSORLG00000023342)	ENSORLG00000030597	ENSORLG00000000462	ptpn11a (ENSORLG00000000470)	tmed2 (ENSORLG00000025915)	PITPNB (ENSORLG00000000499)	NAA25 (ENSORLG00000024199)
Chinese medaka	MODERN SPECIES	1225											kctd9b (ENSOSIG00000022580)	ENSOSIG00000022515	stc1l (ENSOSIG00000022485)	ENSOSIG00000022480	ENSOSIG00000022477	ENSOSIG00000022474 #22	wdr45 (ENSOSIG00000022467)	adra2b (ENSOSIG00000022458)	ENSOSIG00000022452	zcchc9 (ENSOSIG00000022448)
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r.g.b	ENSGT00940000156102.r.g.a	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00580000081898.b	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143
Indian medaka	MODERN SPECIES	30	dusp11 (ENSOMEG00000004705)	ENSOMEG00000004697	tcf7l1a (ENSOMEG00000004675)	ENSOMEG00000004663	COX5B (ENSOMEG00000004641)	ENSOMEG00000004632	npy8ar (ENSOMEG00000004622)	actr1b (ENSOMEG00000004609)	marchf5l (ENSOMEG00000004594)	ENSOMEG00000000104	ENSOMEG00000004559	stc1l (ENSOMEG00000004537)	ENSOMEG00000004517	ENSOMEG00000004479	wdr45 (ENSOMEG00000004467)	ENSOMEG00000000103 #22	ENSOMEG00000004447	ENSOMEG00000004440	zcchc9 (ENSOMEG00000004423)	xrcc4 (ENSOMEG00000004410)	ENSOMEG00000004396	ENSOMEG00000004387	ENSOMEG00000004373	bcl7a (ENSOMEG00000004363)	eif2b1 (ENSOMEG00000004349)	ddx55 (ENSOMEG00000023619)	ENSOMEG00000023590	ENSOMEG00000023550	pla2g3 (ENSOMEG00000023535)	ENSOMEG00000023523	ENSOMEG00000023510
Javanese ricefish	MODERN SPECIES	3	pbdc1 (ENSOJAG00000012370)	ENSOJAG00000012326	GFRA2 (ENSOJAG00000012287)	dusp11 (ENSOJAG00000012276)	ENSOJAG00000012269	tcf7l1a (ENSOJAG00000012257)	ENSOJAG00000012239	ENSOJAG00000012228	COX5B (ENSOJAG00000012217)	npy8ar (ENSOJAG00000012195)	actr1b (ENSOJAG00000012118)	marchf5l (ENSOJAG00000012113)	kctd9b (ENSOJAG00000012023)	ENSOJAG00000007653	stc1l (ENSOJAG00000007558)	ENSOJAG00000007519 #22	adra2b (ENSOJAG00000007446)	ENSOJAG00000007434	zcchc9 (ENSOJAG00000007426)	ENSOJAG00000007350	ENSOJAG00000007302	ENSOJAG00000007265	ENSOJAG00000007232	bcl7a (ENSOJAG00000006572)	eif2b1 (ENSOJAG00000006446)	pla2g3 (ENSOJAG00000005515)	ptpn11a (ENSOJAG00000004911)	tmed2 (ENSOJAG00000004834)	ENSOJAG00000004792	brap (ENSOJAG00000004054)	tor4aa (ENSOJAG00000004020)
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Pomacentridae	ANCESTRAL SPECIES	84	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00390000008371.b	ENSGT00900000141021.b.a.d	ENSGT00390000011500	ENSGT01060000248556.A.a.a.a.b.a.a	ENSGT00940000165259.a	ENSGT00940000165922	ENSGT00940000159383	ENSGT00390000001566	ENSGT00940000155053.c.b	ENSGT00390000008823	ENSGT00950000183005.a.b
Pomacentridae_A	ANCESTRAL SPECIES	81	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.j	ENSGT00390000011010.a.a.i	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00390000008371.b	ENSGT00900000141021.b.a.d	ENSGT00390000011500	ENSGT01060000248556.A.a.a.a.b.a.a	ENSGT00940000165259.a	ENSGT00940000165922	ENSGT00940000159383	ENSGT00390000001566	ENSGT00940000155053.c.b	ENSGT00390000008823	ENSGT00950000183005.a.b
Amphiprion	ANCESTRAL SPECIES	176									ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00390000008371.b	ENSGT00900000141021.b.a.d	ENSGT00390000011500	ENSGT01060000248556.A.a.a.a.b.a.a	ENSGT00940000165259.a	ENSGT00940000165922	ENSGT01090000260059.a.b.b.b.a.d.a.a.a.a.a.b	ENSGT00940000159383	ENSGT00390000001566	ENSGT00940000155053.c.b	ENSGT00390000008823
Orange clownfish	MODERN SPECIES	7	COX5B (ENSAPEG00000022441)	ATP6V1B2 (ENSAPEG00000022415)	dusp11 (ENSAPEG00000022407)	ENSAPEG00000022394	tcf7l1a (ENSAPEG00000022302)	ENSAPEG00000022282	COX5B (ENSAPEG00000022267)	COX5B (ENSAPEG00000022259)	npy8ar (ENSAPEG00000022245)	actr1b (ENSAPEG00000022210)	marchf5l (ENSAPEG00000022194)	kctd9b (ENSAPEG00000022149)	FGFR1 (ENSAPEG00000022049)	stc1l (ENSAPEG00000022028)	ENSAPEG00000021838	ENSAPEG00000021813 #22	wdr45 (ENSAPEG00000021786)	adra2b (ENSAPEG00000021739)	ENSAPEG00000021726	zcchc9 (ENSAPEG00000021681)	ntmt1 (ENSAPEG00000021658)	ier5l (ENSAPEG00000021646)	ptpa (ENSAPEG00000021629)	crata (ENSAPEG00000021588)	ENSAPEG00000021551	june (ENSAPEG00000021547)	ENSAPEG00000021525	THAP1 (ENSAPEG00000021510)	wdr91 (ENSAPEG00000021493)	ENSAPEG00000021473	ENSAPEG00000021457
Bicolor damselfish	MODERN SPECIES	2064									actr1b (ENSSPAG00000009162)	marchf5l (ENSSPAG00000009207)	ENSSPAG00000009233	kctd9b (ENSSPAG00000009242)	FGFR1 (ENSSPAG00000009253)	stc1l (ENSSPAG00000009294)	ENSSPAG00000009332	ENSSPAG00000009532 #22
Cichlidae	ANCESTRAL SPECIES	77															ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866
Pseudocrenilabrinae	ANCESTRAL SPECIES	24	ENSGT00940000158483	ENSGT00940000153877.a.a.b	ENSGT00940000164790.a	ENSGT00940000156902.b	ENSGT00940000153464.A.a	ENSGT00940000157207.a.a	ENSGT00940000177772	ENSGT00940000157955.d.a	ENSGT00940000155945.i.a	ENSGT00390000000642	ENSGT00390000016543.d	ENSGT00530000063851.b	ENSGT00940000155742.a.a	ENSGT00940000159700	ENSGT00390000003837	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866	ENSGT00940000160516
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	34	ENSGT00940000158483	ENSGT00940000153877.a.a.b	ENSGT00940000164790.a	ENSGT00940000156902.b	ENSGT00940000153464.A.a	ENSGT00940000157207.a.a	ENSGT00940000177772	ENSGT00940000157955.d.a	ENSGT00940000155945.i.a	ENSGT00390000000642	ENSGT00390000016543.d	ENSGT00530000063851.b	ENSGT00940000155742.a.a	ENSGT00940000159700	ENSGT00390000003837	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000177258	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866	ENSGT00940000160516
Burton s mouthbrooder	MODERN SPECIES	371	sptan1 (ENSHBUG00000006842)	dync2i2 (ENSHBUG00000006874)	setb (ENSHBUG00000006916)	zdhhc12b (ENSHBUG00000006929)	ENSHBUG00000006964	uap1l1 (ENSHBUG00000006938)	slc25a25b (ENSHBUG00000007042)	lmx1ba (ENSHBUG00000007069)	mvb12ba (ENSHBUG00000000174)	MAPKAP1 (ENSHBUG00000007136)	ENSHBUG00000007140	ENSHBUG00000007147	slc12a2 (ENSHBUG00000000179)	slc27a6 (ENSHBUG00000007344)	prrc1 (ENSHBUG00000007388)	ENSHBUG00000007395 #22	wdr45 (ENSHBUG00000007433)	ENSHBUG00000007447	zcchc9 (ENSHBUG00000007612)	xrcc4 (ENSHBUG00000001108)	vcanb (ENSHBUG00000000730)	HAPLN1 (ENSHBUG00000007687)	cetn3 (ENSHBUG00000007719)	ENSHBUG00000007784	ENSHBUG00000007802	ENSHBUG00000007825	ENSHBUG00000007838	SEPTIN5 (ENSHBUG00000007908)	cldn5b (ENSHBUG00000007931)	acads (ENSHBUG00000007946)	crybb1 (ENSHBUG00000007967)
P. nyererei	MODERN SPECIES	384												ENSPNYG00000011239	slc12a2 (ENSPNYG00000011183)	slc27a6 (ENSPNYG00000011134)	prrc1 (ENSPNYG00000011098)	ENSPNYG00000011079 #22	wdr45 (ENSPNYG00000011043)	ENSPNYG00000011015	zcchc9 (ENSPNYG00000011001)	xrcc4 (ENSPNYG00000010985)	vcanb (ENSPNYG00000010888)	HAPLN1 (ENSPNYG00000010851)	cetn3 (ENSPNYG00000010835)	ENSPNYG00000010789	ENSPNYG00000010736	ENSPNYG00000010720	SEPTIN5 (ENSPNYG00000010341)	cldn5b (ENSPNYG00000010244)	acads (ENSPNYG00000010192)	crybb1 (ENSPNYG00000010006)	cryba4 (ENSPNYG00000009970)
Haplochromini_B	ANCESTRAL SPECIES	30	ENSGT00940000158483	ENSGT00940000153877.a.a.b	ENSGT00940000164790.a	ENSGT00940000156902.b	ENSGT00940000153464.A.a	ENSGT00940000157207.a.a	ENSGT00940000177772	ENSGT00940000157955.d.a	ENSGT00940000155945.i.a	ENSGT00390000000642	ENSGT00390000016543.d	ENSGT00530000063851.b	ENSGT00940000155742.a.a	ENSGT00940000159700	ENSGT00390000003837	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000157995	ENSGT00940000157492.a	ENSGT00940000155411.d	ENSGT00940000156031.f	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b	ENSGT00940000158866	ENSGT00940000160516	ENSGT00940000160372
Eastern happy	MODERN SPECIES	19	dync2i2 (ENSACLG00000011111)	setb (ENSACLG00000011081)	ENSACLG00000011039	zdhhc12b (ENSACLG00000011023)	uap1l1 (ENSACLG00000010989)	slc25a25b (ENSACLG00000010882)	lmx1ba (ENSACLG00000010749)	mvb12ba (ENSACLG00000010732)	MAPKAP1 (ENSACLG00000010709)	ENSACLG00000009576	ENSACLG00000009572	slc12a2 (ENSACLG00000009245)	slc27a6 (ENSACLG00000009188)	ENSACLG00000009180	prrc1 (ENSACLG00000009140)	ENSACLG00000009129 #22	wdr45 (ENSACLG00000009075)	ENSACLG00000009062	zcchc9 (ENSACLG00000009042)	xrcc4 (ENSACLG00000009039)	vcanb (ENSACLG00000008465)	HAPLN1 (ENSACLG00000008441)	cetn3 (ENSACLG00000008418)	ENSACLG00000008375	ENSACLG00000008358	MCTP1 (ENSACLG00000008316)	SEPTIN5 (ENSACLG00000008299)	cldn5b (ENSACLG00000007730)	acads (ENSACLG00000007724)	crybb1 (ENSACLG00000007719)	cryba4 (ENSACLG00000007706)
Zebra mbuna	MODERN SPECIES	1110	ODF2 (ENSMZEG00005011283)	sptan1 (ENSMZEG00005011296)	dync2i2 (ENSMZEG00005011355)	setb (ENSMZEG00005011423)	ENSMZEG00005011447	zdhhc12b (ENSMZEG00005011464)	slc25a25b (ENSMZEG00005011477)	ENSMZEG00005011493	mvb12ba (ENSMZEG00005011501)	MAPKAP1 (ENSMZEG00005011566)	ENSMZEG00005011584	ENSMZEG00005011587	slc12a2 (ENSMZEG00005011604)	slc27a6 (ENSMZEG00005011657)	prrc1 (ENSMZEG00005011682)	ENSMZEG00005011698 #22	wdr45 (ENSMZEG00005011710)	ENSMZEG00005011731	zcchc9 (ENSMZEG00005011747)	xrcc4 (ENSMZEG00005011763)	vcanb (ENSMZEG00005011787)	HAPLN1 (ENSMZEG00005011860)	cetn3 (ENSMZEG00005011894)	ENSMZEG00005011911	ENSMZEG00005011946	MCTP1 (ENSMZEG00005011956)	SEPTIN5 (ENSMZEG00005011980)	cldn5b (ENSMZEG00005011989)	acads (ENSMZEG00005012003)	crybb1 (ENSMZEG00005012016)	cryba4 (ENSMZEG00005012023)
Lyretail cichlid	MODERN SPECIES	339	dync2i2 (ENSNBRG00000006020)	setb (ENSNBRG00000005989)	ENSNBRG00000005923	zdhhc12b (ENSNBRG00000005893)	uap1l1 (ENSNBRG00000005773)	slc25a25b (ENSNBRG00000005737)	ENSNBRG00000005726	lmx1ba (ENSNBRG00000005716)	mvb12ba (ENSNBRG00000005661)	MAPKAP1 (ENSNBRG00000005632)	AJM1 (ENSNBRG00000005613)	ENSNBRG00000005591	slc12a2 (ENSNBRG00000005525)	slc27a6 (ENSNBRG00000005438)	prrc1 (ENSNBRG00000005405)	ENSNBRG00000005392 #22	wdr45 (ENSNBRG00000005357)	ENSNBRG00000005329	zcchc9 (ENSNBRG00000005258)	ENSNBRG00000005187	ENSNBRG00000005160	HAPLN1 (ENSNBRG00000005127)	cetn3 (ENSNBRG00000005115)	ENSNBRG00000005064	ENSNBRG00000005001	MCTP1 (ENSNBRG00000004810)	ENSNBRG00000004789	SEPTIN5 (ENSNBRG00000004761)	cldn5b (ENSNBRG00000004739)	acads (ENSNBRG00000004726)	crybb1 (ENSNBRG00000004528)
Nile tilapia	MODERN SPECIES	19	uap1l1 (ENSONIG00000011298)	slc25a25b (ENSONIG00000011301)	lmx1ba (ENSONIG00000011305)	mvb12ba (ENSONIG00000011310)	MAPKAP1 (ENSONIG00000011314)	AJM1 (ENSONIG00000031602)	PAM (ENSONIG00000017497)	ENSONIG00000032452	ENSONIG00000040459	pomk (ENSONIG00000017496)	ENSONIG00000017491	ENSONIG00000027177	slc12a2 (ENSONIG00000011322)	slc27a6 (ENSONIG00000011351)	prrc1 (ENSONIG00000011358)	ENSONIG00000011363 #22	wdr45 (ENSONIG00000039766)	zcchc9 (ENSONIG00000011366)	xrcc4 (ENSONIG00000011370)	vcanb (ENSONIG00000011373)	HAPLN1 (ENSONIG00000011374)	cetn3 (ENSONIG00000011375)	ENSONIG00000011379	ENSONIG00000011380	MCTP1 (ENSONIG00000011384)	SEPTIN5 (ENSONIG00000011388)	cldn5b (ENSONIG00000021309)	acads (ENSONIG00000011397)	crybb1 (ENSONIG00000011402)	cryba4 (ENSONIG00000011407)	grk3 (ENSONIG00000011410)
Midas cichlid	MODERN SPECIES	21														nadk2 (ENSACIG00000007871)	ENSACIG00000007900	ENSACIG00000008005 #22	wdr45 (ENSACIG00000008014)	adra2b (ENSACIG00000008037)	ENSACIG00000008061	zcchc9 (ENSACIG00000008121)	xrcc4 (ENSACIG00000008147)	ENSACIG00000008164	HAPLN1 (ENSACIG00000008194)	cetn3 (ENSACIG00000008207)	ENSACIG00000008220	ENSACIG00000008242
Pinecone sodierfish	MODERN SPECIES	3	ENSMMDG00005021018	ENSMMDG00005021017	ATP6V1B2 (ENSMMDG00005020967)	dusp11 (ENSMMDG00005020958)	ENSMMDG00005020957	tcf7l1a (ENSMMDG00005020954)	ENSMMDG00005020953	COX5B (ENSMMDG00005020951)	npy8ar (ENSMMDG00005020758)	ACTR1B (ENSMMDG00005020749)	marchf5l (ENSMMDG00005020746)	kctd9b (ENSMMDG00005020743)	FGFR1 (ENSMMDG00005009617)	stc1l (ENSMMDG00005009482)	ENSMMDG00005009317	ENSMMDG00005009308 #22	wdr45 (ENSMMDG00005009282)	adra2b (ENSMMDG00005009275)	ENSMMDG00005009272	zcchc9 (ENSMMDG00005009269)	xrcc4 (ENSMMDG00005009267)	vcanb (ENSMMDG00005009264)	HAPLN1 (ENSMMDG00005009243)	EDIL3 (ENSMMDG00005009239)	ENSMMDG00005009236	ENSMMDG00005009233	ENSMMDG00005009231	MCTP1 (ENSMMDG00005008961)	ENSMMDG00005008947	SEPTIN5 (ENSMMDG00005008619)	cldn5b (ENSMMDG00005008612)
Cod	MODERN SPECIES	17	pbdc1 (ENSGMOG00000019503)	xpo7 (ENSGMOG00000019505)	ENSGMOG00000008712	dusp11 (ENSGMOG00000028702)	ENSGMOG00000034173	tcf7l1a (ENSGMOG00000006333)	dbnla (ENSGMOG00000027970)	ENSGMOG00000030473	npy8ar (ENSGMOG00000017513)	ENSGMOG00000017491	ENSGMOG00000028456	kctd9b (ENSGMOG00000014201)	ENSGMOG00000012944	stc1l (ENSGMOG00000030223)	ENSGMOG00000026568	ENSGMOG00000033980 #22	ENSGMOG00000033649	wdr45 (ENSGMOG00000016140)	ENSGMOG00000016274	ENSGMOG00000030610	vcanb (ENSGMOG00000027164)	ENSGMOG00000000804	EDIL3 (ENSGMOG00000025048)	ENSGMOG00000009774	ENSGMOG00000032647	ENSGMOG00000017202	ENSGMOG00000017226	ENSGMOG00000026956	ENSGMOG00000031824	ENSGMOG00000017269	ENSGMOG00000030831
Protacanthopterygii	ANCESTRAL SPECIES	26	ENSGT00390000014618.b.c	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782.i	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155864.b.c.a	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00950000183041.C	ENSGT00940000160328	ENSGT00390000000924	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.a	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	194	ENSGT00940000156354.p.b	ENSGT00940000154962.A.a.b.a.b	ENSGT00390000014618.b.c.d	ENSGT00940000156168.B.z	ENSGT00940000155068.a.a.a	ENSGT00940000155847	ENSGT00940000164699.v	ENSGT00940000157038.a.b.eb	ENSGT00390000011010.a.a.q	ENSGT00940000164226.a.b.c	ENSGT00940000155782.i.b	ENSGT00390000009948.d.j	ENSGT00940000155860.b.b	ENSGT00390000005989.b.b.e	ENSGT00940000154704.c.c.l	ENSGT00410000025802.a #22	ENSGT00940000155864.b.c.a.b	ENSGT00940000155657.e	ENSGT00940000161915.b.a	ENSGT00950000183041.C	ENSGT00940000160328.d	ENSGT00390000000924	ENSGT00940000155186.i.a	ENSGT00940000156102.r.w	ENSGT00940000155186.i.b	ENSGT00940000166544.a	ENSGT00940000156102.r.x	ENSGT00940000159267	ENSGT00940000158144.b.b	ENSGT00940000157492.a.d	ENSGT00940000157995.k
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00940000156354.p.b	ENSGT00940000154962.A.a.b.a.b	ENSGT00390000014618.b.c.d	ENSGT00940000156168.B.z	ENSGT00940000155068.a.a.a	ENSGT00940000155847	ENSGT00940000164699.v	ENSGT00940000157038.a.b.eb	ENSGT00390000011010.a.a.q	ENSGT00940000164226.a.b.c	ENSGT00940000155782.i.b	ENSGT00390000009948.d.j	ENSGT00940000155860.b.b	ENSGT00390000005989.b.b.e	ENSGT00940000154704.c.c.l	ENSGT00410000025802.a #22	ENSGT00940000155864.b.c.a.b	ENSGT00940000155657.e	ENSGT00940000161915.b.a	ENSGT00950000183041.C	ENSGT00940000160328.d	ENSGT00390000000924	ENSGT00940000155186.i.b	ENSGT00940000166544.a	ENSGT00940000156102.r.x	ENSGT00940000159267	ENSGT00940000158144.b.b	ENSGT00940000157492.a.d	ENSGT00940000157995.k	ENSGT00940000155411.d.f	ENSGT00940000160879.k.b
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000156354.p.b	ENSGT00940000154962.A.a.b.a.b	ENSGT00390000014618.b.c.d	ENSGT00940000156168.B.z	ENSGT00940000155068.a.a.a	ENSGT00940000155847	ENSGT00940000164699.v	ENSGT00940000157038.a.b.eb	ENSGT00390000011010.a.a.q	ENSGT00940000164226.a.b.c	ENSGT00940000155782.i.b	ENSGT00390000009948.d.j	ENSGT00940000155860.b.b	ENSGT00390000005989.b.b.e	ENSGT00940000154704.c.c.l	ENSGT00410000025802.a #22	ENSGT00940000155864.b.c.a.b	ENSGT00940000155657.e	ENSGT00940000161915.b.a	ENSGT00950000183041.C	ENSGT00940000160328.d	ENSGT00390000000924.c	ENSGT00940000155186.i.b	ENSGT00940000166544.a	ENSGT00940000156102.r.x	ENSGT00940000159267	ENSGT00940000158144.b.b	ENSGT00940000157492.a.d	ENSGT00940000157995.k	ENSGT00940000155411.d.f	ENSGT00940000160879.k.b
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000103514	ENSSSAG00000116632	ENSSSAG00000075429	dusp11 (ENSSSAG00000082908)	ENSSSAG00000110436	ENSSSAG00000075408	tcf7l1a (ENSSSAG00000091767)	COX5B (ENSSSAG00000075382)	ENSSSAG00000117499	ENSSSAG00000075375	ENSSSAG00000083003	ENSSSAG00000075329	ENSSSAG00000075317	ENSSSAG00000055992	stc1l (ENSSSAG00000055553)	ENSSSAG00000055485 #22	ENSSSAG00000055494	ENSSSAG00000055482	wdr45 (ENSSSAG00000055384)	ENSSSAG00000104119	zcchc9 (ENSSSAG00000055365)	ENSSSAG00000083738	ENSSSAG00000055358	atg10 (ENSSSAG00000055353)	tmem167a (ENSSSAG00000094567)	xrcc4 (ENSSSAG00000055318)	vcanb (ENSSSAG00000074509)	hapln1 (ENSSSAG00000055311)	EDIL3 (ENSSSAG00000082821)	mef2ca (ENSSSAG00000054817)	cetn3 (ENSSSAG00000087654)
River trout	MODERN SPECIES	3	HOMER1 (ENSSTUG00000006894)	tia1 (ENSSTUG00000006490)	ZNF703 (ENSSTUG00000006469)	GFRA2 (ENSSTUG00000006440)	ENSSTUG00000006301	dusp11 (ENSSTUG00000006269)	ENSSTUG00000006244	tcf7l1a (ENSSTUG00000006221)	ENSSTUG00000006194	npy8ar (ENSSTUG00000006187)	actr1b (ENSSTUG00000005819)	marchf5l (ENSSTUG00000005777)	FGFR1 (ENSSTUG00000005535)	stc1l (ENSSTUG00000005489)	ENSSTUG00000005265	ENSSTUG00000005248 #22	ENSSTUG00000005240	ENSSTUG00000005232	wdr45 (ENSSTUG00000005122)	adra2b (ENSSTUG00000005098)	zcchc9 (ENSSTUG00000005085)	ENSSTUG00000005062	atg10 (ENSSTUG00000005057)	tmem167a (ENSSTUG00000005008)	xrcc4 (ENSSTUG00000005004)	ENSSTUG00000004946	HAPLN1 (ENSSTUG00000004934)	EDIL3 (ENSSTUG00000004912)	mef2ca (ENSSTUG00000004885)	cetn3 (ENSSTUG00000004851)	ENSSTUG00000004752
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00940000156354.p.b	ENSGT00940000154962.A.a.b.a.b	ENSGT00390000014618.b.c.d	ENSGT00940000156168.B.z	ENSGT00940000155068.a.a.a	ENSGT00940000155847	ENSGT00940000164699.v	ENSGT00940000157038.a.b.eb	ENSGT00390000011010.a.a.q	ENSGT00940000164226.a.b.c	ENSGT00940000155782.i.b	ENSGT00390000009948.d.j	ENSGT00940000155860.b.b	ENSGT00390000005989.b.b.e	ENSGT00940000154704.c.c.l	ENSGT00410000025802.a #22	ENSGT00940000155864.b.c.a.b	ENSGT00940000155657.e	ENSGT00940000161915.b.a	ENSGT00950000183041.C	ENSGT00940000160328.d	ENSGT00390000000924	ENSGT00940000155186.i.b	ENSGT00940000166544.a	ENSGT00940000156102.r.x	ENSGT00940000159267	ENSGT00940000158144.b.b	ENSGT00940000157492.a.d	ENSGT00940000157995.k	ENSGT00940000155411.d.f	ENSGT00940000160879.k.b
Oncorhynchus_a	ANCESTRAL SPECIES	47	ENSGT00940000156354.p.b	ENSGT00940000154962.A.a.b.a.b	ENSGT00390000014618.b.c.d	ENSGT00940000156168.B.z	ENSGT00940000155068.a.a.a	ENSGT00940000155847	ENSGT00940000164699.v	ENSGT00940000157038.a.b.eb	ENSGT00390000011010.a.a.q	ENSGT00940000164226.a.b.c	ENSGT00940000155782.i.b	ENSGT00390000009948.d.j	ENSGT00940000155860.b.b	ENSGT00390000005989.b.b.e	ENSGT00940000154704.c.c.l	ENSGT00410000025802.a #22	ENSGT00940000155864.b.c.a.b	ENSGT00940000155657.e	ENSGT00940000161915.b.a	ENSGT00950000183041.C	ENSGT00390000000924	ENSGT00940000155186.i.b	ENSGT00940000166544.a	ENSGT00940000156102.r.x	ENSGT00940000159267	ENSGT00940000158144.b.b	ENSGT00940000157492.a.d	ENSGT00940000157995.k	ENSGT00940000155411.d.f	ENSGT00940000160879.k.b	ENSGT00940000156031.f
Coho salmon	MODERN SPECIES	21	HOMER1 (ENSOKIG00005039439)	ENSOKIG00005039711	ENSOKIG00005040965	ZNF703 (ENSOKIG00005040977)	GFRA2 (ENSOKIG00005040990)	ATP6V1B2 (ENSOKIG00005041039)	ENSOKIG00005041468	TCF7L1 (ENSOKIG00005041482)	COX5B (ENSOKIG00005041507)	npy8ar (ENSOKIG00005041585)	ACTR1A (ENSOKIG00005041614)	ENSOKIG00005041858	FGFR1 (ENSOKIG00005041930)	stc1l (ENSOKIG00005041995)	ENSOKIG00005042083	LAGE3 (ENSOKIG00005042705) #22	ENSOKIG00005042716	wdr45 (ENSOKIG00005042848)	ENSOKIG00005043013	zcchc9 (ENSOKIG00005043031)	atg10 (ENSOKIG00005043045)	ENSOKIG00005043057	tmem167a (ENSOKIG00005043068)	xrcc4 (ENSOKIG00005043127)	vcanb (ENSOKIG00005043160)	HAPLN1 (ENSOKIG00005043241)	EDIL3 (ENSOKIG00005043265)	mef2ca (ENSOKIG00005043339)	ENSOKIG00005043426	cetn3 (ENSOKIG00005043445)	ENSOKIG00005043502
Chinook salmon	MODERN SPECIES	26	ENSOTSG00005012183	ENSOTSG00005013031	ZNF703 (ENSOTSG00005013033)	GFRA2 (ENSOTSG00005013034)	ENSOTSG00005013042	dusp11 (ENSOTSG00005013179)	ENSOTSG00005013181	tcf7l1a (ENSOTSG00005013182)	COX5B (ENSOTSG00005013183)	npy8ar (ENSOTSG00005013184)	actr1b (ENSOTSG00005013187)	marchf5l (ENSOTSG00005013403)	FGFR1 (ENSOTSG00005013520)	stc1l (ENSOTSG00005015169)	ENSOTSG00005015170	LAGE3 (ENSOTSG00005015171) #22	wdr45 (ENSOTSG00005015172)	adra2b (ENSOTSG00005015189)	zcchc9 (ENSOTSG00005015191)	atg10 (ENSOTSG00005015192)	tmem167a (ENSOTSG00005015193)	xrcc4 (ENSOTSG00005015194)	vcanb (ENSOTSG00005015195)	HAPLN1 (ENSOTSG00005015196)	EDIL3 (ENSOTSG00005015197)	cetn3 (ENSOTSG00005015199)	ENSOTSG00005015200	TLR8 (ENSOTSG00005015202)	MCTP1 (ENSOTSG00005015203)	ENSOTSG00005015204	ENSOTSG00005015205
Huchen	MODERN SPECIES	1360														FGFR1 (ENSHHUG00000032973)	stc1l (ENSHHUG00000032963)	ENSHHUG00000032960 #22	ENSHHUG00000032956	ENSHHUG00000032919	wdr45 (ENSHHUG00000032915)	adra2b (ENSHHUG00000032897)	ENSHHUG00000032893	zcchc9 (ENSHHUG00000032891)	tmem167a (ENSHHUG00000032879)	xrcc4 (ENSHHUG00000032871)	ENSHHUG00000032867
Salmoninae	ANCESTRAL SPECIES	47	ENSGT00390000011031	ENSGT00390000014618.b.c.c	ENSGT00940000156168.B.y	ENSGT00940000155068.a.a.b	ENSGT00940000164699.u	ENSGT00940000157038.a.b.db	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.r	ENSGT00940000164226.a.b.d	ENSGT00940000155782.i.a	ENSGT00390000009948.d.i	ENSGT00940000154314.a	ENSGT00940000155860.b.a	ENSGT00390000005989.b.b.f	ENSGT00940000154704.c.c.k.a	ENSGT00410000025802.b #22	ENSGT00940000155864.b.c.a.a	ENSGT00940000155657.f	ENSGT00940000161915.b.b	ENSGT00940000154856.B.d.a.b	ENSGT00980000198999	ENSGT00940000160328.c
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00390000014618.b.c.c	ENSGT00940000156168.B.y	ENSGT00940000155068.a.a.b	ENSGT00940000164699.u	ENSGT00940000157038.a.b.db	ENSGT00940000156732.a.b.a	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.r	ENSGT00940000164226.a.b.d	ENSGT00940000155782.i.a	ENSGT00390000009948.d.i	ENSGT00940000154314.a	ENSGT00940000155860.b.a	ENSGT00390000005989.b.b.f	ENSGT00940000154704.c.c.k.a	ENSGT00410000025802.b #22	ENSGT00940000155864.b.c.a.a	ENSGT00940000155657.f	ENSGT00940000161915.b.b	ENSGT00940000154856.B.d.a.b	ENSGT00980000198999	ENSGT00940000160328.c	ENSGT00940000157492.a.c.a.b	ENSGT00940000157995.l	ENSGT00940000155411.d.e	ENSGT00940000160879.k.a	ENSGT00940000159913.a.b	ENSGT00940000161769.b.a.y.a	ENSGT01100000263520.a.b.a.b.c.a.a.a.b	ENSGT00940000158866.h.b	ENSGT00940000160516.e
Salmo	ANCESTRAL SPECIES		ENSGT00390000014618.b.c.c	ENSGT00940000156168.B.y	ENSGT00940000155068.a.a.b	ENSGT00940000164699.u	ENSGT00940000157038.a.b.db	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.r	ENSGT00940000164226.a.b.d	ENSGT00940000155782.i.a	ENSGT00390000009948.d.i	ENSGT00940000154314.a	ENSGT00940000155860.b.a	ENSGT00390000005989.b.b.f	ENSGT00940000154704.c.c.k.b.a.a	ENSGT00940000154704.c.c.k.a	ENSGT00410000025802.b #22	ENSGT00940000155864.b.c.a.a	ENSGT00940000155657.f	ENSGT00940000161915.b.b	ENSGT00940000154856.B.d.a.b	ENSGT00940000160328.c	ENSGT00390000000924.d	ENSGT00940000155186.i.a	ENSGT00940000156102.r.w	ENSGT00940000157492.a.c.a.b	ENSGT00940000157995.l	ENSGT00940000155411.d.e	ENSGT00940000160879.k.a	ENSGT00940000159913.a.b	ENSGT00940000161769.b.b.b	ENSGT00940000161769.b.a.y.a
Atlantic salmon	MODERN SPECIES		ENSSSAG00000042615	ENSSSAG00000075494	ENSSSAG00000099817	ENSSSAG00000083147	ENSSSAG00000042641	tcf7l1a (ENSSSAG00000075404)	dbnla (ENSSSAG00000042656)	npy8ar (ENSSSAG00000096626)	acty (ENSSSAG00000042725)	ENSSSAG00000042798	ENSSSAG00000042828	ENSSSAG00000043549	stc1l (ENSSSAG00000074457)	ENSSSAG00000109953	ENSSSAG00000074465	ENSSSAG00000117584 #22	wdr45 (ENSSSAG00000074477)	ENSSSAG00000040172	ACOT12 (ENSSSAG00000074492)	atg10 (ENSSSAG00000074500)	tmem167a (ENSSSAG00000090428)	ENSSSAG00000092332	ENSSSAG00000055313	ENSSSAG00000111145	ENSSSAG00000074522	ENSSSAG00000074526	ENSSSAG00000074528	ENSSSAG00000074542	ENSSSAG00000047458	ENSSSAG00000107631	ENSSSAG00000089991
River trout	MODERN SPECIES	15	GFRA2 (ENSSTUG00000042863)	ENSSTUG00000042895	ENSSTUG00000042911	tcf7l1a (ENSSTUG00000042938)	ENSSTUG00000043017	ENSSTUG00000043023	ENSSTUG00000043054	COX5B (ENSSTUG00000043068)	npy8ar (ENSSTUG00000043086)	actr1b (ENSSTUG00000043119)	marchf5l (ENSSTUG00000043256)	kctd9b (ENSSTUG00000043280)	FGFR1 (ENSSTUG00000043321)	stc1l (ENSSTUG00000043513)	ENSSTUG00000043525	ENSSTUG00000043560 #22	ENSSTUG00000043582	wdr45 (ENSSTUG00000043592)	adra2b (ENSSTUG00000043601)	ENSSTUG00000043614	ENSSTUG00000043680	ENSSTUG00000043750	ENSSTUG00000043763	ENSSTUG00000043828	ENSSTUG00000043839	cetn3 (ENSSTUG00000043855)	ENSSTUG00000043876	TLR8 (ENSSTUG00000043886)	SEPTIN5 (ENSSTUG00000043909)	cldn5a (ENSSTUG00000044299)	acads (ENSSTUG00000044319)
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00390000011031	ENSGT00390000014618.b.c.c	ENSGT00940000156168.B.y	ENSGT00940000164699.u	ENSGT00940000157038.a.b.db	ENSGT00940000156732.a.b.a	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.r	ENSGT00940000164226.a.b.d	ENSGT00940000155782.i.a	ENSGT00390000009948.d.i	ENSGT00940000154314.a	ENSGT00940000155860.b.a	ENSGT00390000005989.b.b.f	ENSGT00940000154704.c.c.k.a	ENSGT00410000025802.b #22	ENSGT00940000155864.b.c.a.a	ENSGT00940000161915.b.b	ENSGT00940000154856.B.d.a.b	ENSGT00980000198999	ENSGT00940000160328.c	ENSGT00940000155186.i.a	ENSGT00940000156102.r.w	ENSGT00940000157492.a.c.b	ENSGT00940000157995.l	ENSGT00940000155411.d.e	ENSGT00940000160879.k.a	ENSGT00940000159913.a.b	ENSGT00940000161769.b.a.y.a	ENSGT01100000263520.a.b.a.b.c.a.a.a.b	ENSGT00940000158866.h.b
Rainbow trout	MODERN SPECIES	26	tcf7l1a (ENSOMYG00000000783)	ENSOMYG00000000771	ENSOMYG00000000764	ENSOMYG00000000760	ENSOMYG00000077787	ENSOMYG00000055334	ENSOMYG00000058296	ENSOMYG00000000749	ENSOMYG00000000734	march5 (ENSOMYG00000000701)	kctd9b (ENSOMYG00000000675)	ENSOMYG00000000533	stc (ENSOMYG00000000255)	ENSOMYG00000000244	ENSOMYG00000075191	ENSOMYG00000000109 #22	ENSOMYG00000000093	ENSOMYG00000056185	ENSOMYG00000004807	ENSOMYG00000004673	ACOT12 (ENSOMYG00000004652)	TMEM167A (ENSOMYG00000004636)	ENSOMYG00000048093	vcanb (ENSOMYG00000004591)	ENSOMYG00000004504	cetn3 (ENSOMYG00000004451)	ENSOMYG00000027540	ENSOMYG00000004379	ENSOMYG00000004160	ENSOMYG00000068411	ENSOMYG00000003835
Huchen	MODERN SPECIES	3761									actr1b (ENSHHUG00000035681)	marchf5l (ENSHHUG00000035771)	kctd9b (ENSHHUG00000035821)	FGFR1 (ENSHHUG00000035839)	stc1l (ENSHHUG00000037217)	ENSHHUG00000037235	ENSHHUG00000037241	ENSHHUG00000037251 #22	ENSHHUG00000037260	wdr45 (ENSHHUG00000037308)	adra2b (ENSHHUG00000037622)
Northern pike	MODERN SPECIES	13	ZNF703 (ENSELUG00000006331)	GFRA2 (ENSELUG00000006312)	ATP6V1B2 (ENSELUG00000006287)	dusp11 (ENSELUG00000006242)	ENSELUG00000006202	ENSELUG00000006171	dbnla (ENSELUG00000006097)	cox5b (ENSELUG00000006066)	npy8ar (ENSELUG00000006030)	actr1b (ENSELUG00000006002)	marchf5l (ENSELUG00000005987)	kctd9b (ENSELUG00000000188)	FGFR1 (ENSELUG00000005898)	stc1l (ENSELUG00000005845)	ENSELUG00000005814	ENSELUG00000028519 #22	ENSELUG00000000175	ENSELUG00000005733	wdr45 (ENSELUG00000005718)	adra2b (ENSELUG00000005695)	ENSELUG00000005682	zcchc9 (ENSELUG00000005654)	atg10 (ENSELUG00000027833)	tmem167a (ENSELUG00000005534)	xrcc4 (ENSELUG00000005582)	vcanb (ENSELUG00000000149)	HAPLN1 (ENSELUG00000005422)	EDIL3 (ENSELUG00000024775)	mef2ca (ENSELUG00000005368)	cetn3 (ENSELUG00000005291)	ENSELUG00000005278
Otomorpha	ANCESTRAL SPECIES	63	ENSGT00940000155068.b	ENSGT00940000153710.a.e	ENSGT00940000155847	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.s	ENSGT00940000164226.a.b	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000154314.a	ENSGT00940000155860.a.f	ENSGT00390000005989.b.b	ENSGT00940000158918.h	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000160328	ENSGT00390000000924	ENSGT00940000155186	ENSGT00940000166544	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000157995
Otophysi	ANCESTRAL SPECIES	86	ENSGT00390000009387	ENSGT00940000153710.a.e	ENSGT00940000155847	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.s	ENSGT00940000164226.a.b	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000154314.a	ENSGT00940000155860.a.f	ENSGT00390000005989.b.b	ENSGT00940000158918.h	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155864.b.c.b.d	ENSGT00940000155657	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000160328	ENSGT00390000000924	ENSGT00940000155186	ENSGT00940000166544	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000157995
Cyprinoidei	ANCESTRAL SPECIES	6	ENSGT00390000009387	ENSGT00940000153710.a.e	ENSGT00940000155847	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.s	ENSGT00940000164226.a.b	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000154314.a	ENSGT00940000155860.a.f	ENSGT00390000005989.b.b	ENSGT00940000158918.h	ENSGT00940000154704.c.c	ENSGT00410000025802 #22	ENSGT00940000155864.b.c.b.d	ENSGT00940000155657	ENSGT00940000168869	ENSGT00950000183041.C	ENSGT00940000160328	ENSGT00390000000924	ENSGT00940000155186	ENSGT00940000166544	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000157995	ENSGT00940000155411.c.n	ENSGT00940000157876.c
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	28	ess2 (ENSCARG00000035310)	stambpa (ENSCARG00000035326)	dusp11 (ENSCARG00000035339)	ENSCARG00000035347	tcf7l1a (ENSCARG00000035384)	dbnla (ENSCARG00000035589)	cox5ba (ENSCARG00000035709)	npy8ar (ENSCARG00000035742)	marchf5l (ENSCARG00000035757)	actr1b (ENSCARG00000035843)	kctd9b (ENSCARG00000035919)	fgfr1b (ENSCARG00000036138)	stc1l (ENSCARG00000036408)	RHOBTB2 (ENSCARG00000036421)	ENSCARG00000036470	ENSCARG00000036481 #22	zgc:100918 (ENSCARG00000036497)	wdr45 (ENSCARG00000036527)	ADRA2B (ENSCARG00000036756)	zcchc9 (ENSCARG00000036778)	ACOT12 (ENSCARG00000036791)	ENSCARG00000036927	atg10 (ENSCARG00000038831)	tmem167a (ENSCARG00000038856)	xrcc4 (ENSCARG00000038909)	MCTP1 (ENSCARG00000038983)	nr2f1b (ENSCARG00000039352)	arrdc3b (ENSCARG00000039421)	cetn3 (ENSCARG00000039462)	pcna (ENSCARG00000039503)	trim69 (ENSCARG00000039527)
Goldfish	MODERN SPECIES	28	SEZ6L (ENSCARG00000049171)	grk3 (ENSCARG00000045547)	cryba4 (ENSCARG00000045371)	crybb1 (ENSCARG00000045343)	cldn5b (ENSCARG00000045334)	septin5b (ENSCARG00000043676)	MCTP1 (ENSCARG00000043019)	nr2f1b (ENSCARG00000042908)	arrdc3b (ENSCARG00000042826)	cetn3 (ENSCARG00000042791)	mef2ca (ENSCARG00000042349)	RASA1 (ENSCARG00000041194)	EDIL3 (ENSCARG00000041091)	HAPLN1 (ENSCARG00000041068)	vcanb (ENSCARG00000040972)	ENSCARG00000040945 #22	zgc:100918 (ENSCARG00000040922)	wdr45 (ENSCARG00000040072)	ANTXR1 (ENSCARG00000040035)	npffr1l1 (ENSCARG00000040011)	bmp1b (ENSCARG00000039583)	trim69 (ENSCARG00000039527)	pcna (ENSCARG00000039503)	cetn3 (ENSCARG00000039462)	arrdc3b (ENSCARG00000039421)	nr2f1b (ENSCARG00000039352)	MCTP1 (ENSCARG00000038983)	xrcc4 (ENSCARG00000038909)	tmem167a (ENSCARG00000038856)	atg10 (ENSCARG00000038831)	ENSCARG00000036927
Cyprininae_a	ANCESTRAL SPECIES	11	ENSGT00390000009387.b	ENSGT00940000153710.a.e.a	ENSGT00940000155847.g	ENSGT00940000164699.a.b	ENSGT00940000157038.a.b.b.b	ENSGT00940000156732.a.a.c	ENSGT00390000011010.a.a.s	ENSGT00940000164226.a.b.a	ENSGT00390000009948.d.l	ENSGT00940000155782.l	ENSGT00940000154314.a.b	ENSGT00940000155860.a.f.b	ENSGT00390000005989.b.b.b	ENSGT00940000158918.h.a	ENSGT00940000154704.c.c	ENSGT00410000025802.c #22	ENSGT00940000155864.b.c.b.d.a	ENSGT00940000155657.a	ENSGT00940000161915.c.b	ENSGT00940000154856.B.c.a	ENSGT00950000183041.C.p	ENSGT00940000160328.a	ENSGT00950000183049.E.s.a	ENSGT00390000000924.b	ENSGT00940000155186.n	ENSGT00940000166544.c	ENSGT00940000156102.r.c	ENSGT00940000159267.g	ENSGT00940000158144.b.c	ENSGT00940000155846.g.a	ENSGT00940000157492.a.b
Common carp reference	MODERN SPECIES	32	dgcr2 (ENSCCRG00000018811)	ess2 (ENSCCRG00000018824)	ENSCCRG00000067868	dusp11 (ENSCCRG00000019030)	tcf7l1a (ENSCCRG00000019060)	dbnla (ENSCCRG00000009749)	cox5ba (ENSCCRG00000069587)	npy8ar (ENSCCRG00000063605)	marchf5l (ENSCCRG00000019579)	actr1b (ENSCCRG00000019609)	kctd9b (ENSCCRG00000019156)	fgfr1b (ENSCCRG00000013460)	stc1l (ENSCCRG00000079069)	ENSCCRG00000013181	ENSCCRG00000011293	ENSCCRG00000058276 #22	zgc:100918 (ENSCCRG00000016691)	wdr45 (ENSCCRG00000016527)	ENSCCRG00000006503	ENSCCRG00000056811	zcchc9 (ENSCCRG00000082648)	ACOT12 (ENSCCRG00000031855)	ENSCCRG00000031992	atg10 (ENSCCRG00000008270)	tmem167a (ENSCCRG00000008476)	xrcc4 (ENSCCRG00000008481)	vcanb (ENSCCRG00000008487)	HAPLN1 (ENSCCRG00000076688)	EDIL3 (ENSCCRG00000078854)	RASA1 (ENSCCRG00000008509)	mef2ca (ENSCCRG00000026222)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	109								npy8ar (ENSSGRG00000028716)	marchf5l (ENSSGRG00000028709)	actr1b (ENSSGRG00000028461)	fgfr1b (ENSSGRG00000020655)	stc1l (ENSSGRG00000020470)	RHOBTB2 (ENSSGRG00000020125)	ENSSGRG00000020072	ENSSGRG00000020070 #22	ENSSGRG00000020069 #22	zgc:100918 (ENSSGRG00000020044)	wdr45 (ENSSGRG00000020041)	ADRA2B (ENSSGRG00000020034)	ENSSGRG00000020033	zcchc9 (ENSSGRG00000020031)	ACOT12 (ENSSGRG00000019871)	ENSSGRG00000019844	atg10 (ENSSGRG00000019825)	tmem167a (ENSSGRG00000019818)	xrcc4 (ENSSGRG00000019816)	vcanb (ENSSGRG00000019813)	HAPLN1 (ENSSGRG00000019810)	EDIL3 (ENSSGRG00000019809)	RASA1 (ENSSGRG00000019805)	mef2ca (ENSSGRG00000019698)
Golden-line barbel	MODERN SPECIES	109									npy8ar (ENSSGRG00000028716)	marchf5l (ENSSGRG00000028709)	actr1b (ENSSGRG00000028461)	fgfr1b (ENSSGRG00000020655)	stc1l (ENSSGRG00000020470)	RHOBTB2 (ENSSGRG00000020125)	ENSSGRG00000020072	ENSSGRG00000020070 #22	ENSSGRG00000020069 #22	zgc:100918 (ENSSGRG00000020044)	wdr45 (ENSSGRG00000020041)	ADRA2B (ENSSGRG00000020034)	ENSSGRG00000020033	zcchc9 (ENSSGRG00000020031)	ACOT12 (ENSSGRG00000019871)	ENSSGRG00000019844	atg10 (ENSSGRG00000019825)	tmem167a (ENSSGRG00000019818)	xrcc4 (ENSSGRG00000019816)	vcanb (ENSSGRG00000019813)	HAPLN1 (ENSSGRG00000019810)	EDIL3 (ENSSGRG00000019809)	RASA1 (ENSSGRG00000019805)
Goldfish	MODERN SPECIES	1	setd1ba (ENSCARG00000008324)	car15 (ENSCARG00000008305)	dgcr2 (ENSCARG00000008203)	ess2 (ENSCARG00000008086)	stambpa (ENSCARG00000008064)	dusp11 (ENSCARG00000008053)	ENSCARG00000008043	tcf7l1a (ENSCARG00000007628)	dbnla (ENSCARG00000007574)	npy8ar (ENSCARG00000007565)	marchf5l (ENSCARG00000007547)	actr1b (ENSCARG00000007209)	kctd9b (ENSCARG00000006962)	fgfr1b (ENSCARG00000005094)	stc1l (ENSCARG00000005025)	ENSCARG00000005018 #22	zgc:100918 (ENSCARG00000004993)	wdr45 (ENSCARG00000004890)	ADRA2B (ENSCARG00000004867)	ENSCARG00000004857	zcchc9 (ENSCARG00000004847)	ADRA2B (ENSCARG00000004844)	ENSCARG00000004828	ZMIZ2 (ENSCARG00000004809)	ENSCARG00000002377	ENSCARG00000017488	ENSCARG00000017479	ENSCARG00000017473	DUSP26 (ENSCARG00000017463)	RNF122 (ENSCARG00000017451)	ppiab (ENSCARG00000017438)
Golden-line barbel	MODERN SPECIES	317	stambpa (ENSSGRG00000030442)	dusp11 (ENSSGRG00000030444)	ENSSGRG00000030447	ENSSGRG00000030449	tcf7l1a (ENSSGRG00000030454)	dbnla (ENSSGRG00000030538)	cox5ba (ENSSGRG00000030777)	npy8ar (ENSSGRG00000030779)	marchf5l (ENSSGRG00000030781)	actr1b (ENSSGRG00000030786)	kctd9b (ENSSGRG00000031058)	fgfr1b (ENSSGRG00000031274)	stc1l (ENSSGRG00000040411)	RHOBTB2 (ENSSGRG00000040420)	zgc:100918 (ENSSGRG00000040591)	ENSSGRG00000040653 #22	ENSSGRG00000040654	ADRA2B (ENSSGRG00000040655)	zcchc9 (ENSSGRG00000040656)	ACOT12 (ENSSGRG00000040657)	ENSSGRG00000040674	atg10 (ENSSGRG00000041533)	tmem167a (ENSSGRG00000041535)	xrcc4 (ENSSGRG00000041552)	ENSSGRG00000041554	ENSSGRG00000041557	HAPLN1 (ENSSGRG00000041560)	EDIL3 (ENSSGRG00000041562)	RASA1 (ENSSGRG00000041568)	mef2ca (ENSSGRG00000042093)	cetn3 (ENSSGRG00000042094)
Zebrafish	MODERN SPECIES	1	ess2 (ENSDARG00000060922)	stambpa (ENSDARG00000054501)	dusp11 (ENSDARG00000038156)	ENSDARG00000086266	ENSDARG00000112575	tcf7l1a (ENSDARG00000038159)	dbnla (ENSDARG00000008170)	cox5ba (ENSDARG00000015978)	npy8ar (ENSDARG00000017234)	marchf5l (ENSDARG00000028559)	actr1b (ENSDARG00000011611)	kctd9b (ENSDARG00000010603)	fgfr1b (ENSDARG00000011190)	stc1l (ENSDARG00000058476)	RHOBTB2 (ENSDARG00000089340)	ENSDARG00000116344 #22	zgc:100918 (ENSDARG00000087243)	wdr45 (ENSDARG00000090219)	ENSDARG00000116988	ENSDARG00000068593	zcchc9 (ENSDARG00000007531)	ACOT12 (ENSDARG00000054534)	ENSDARG00000099727	atg10 (ENSDARG00000104846)	xrcc4 (ENSDARG00000010732)	tmem167a (ENSDARG00000035914)	vcanb (ENSDARG00000009401)	HAPLN1 (ENSDARG00000068516)	EDIL3 (ENSDARG00000060877)	RASA1 (ENSDARG00000073665)	ENSDARG00000098512
Characiphysae	ANCESTRAL SPECIES	204															ENSGT00390000005989.b.b	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00950000183041.C	ENSGT00390000000924	ENSGT00940000155186	ENSGT00940000166544	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000157995
Characiphysae_b	ANCESTRAL SPECIES	226															ENSGT00390000005989.b.b	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00950000183041.C	ENSGT00390000000924	ENSGT00940000155186	ENSGT00940000166544	ENSGT00940000156102.r	ENSGT00940000159267	ENSGT00940000158144.b	ENSGT00940000157492.a	ENSGT00940000157995
Characoidei	ANCESTRAL SPECIES	348															ENSGT00390000005989.b.b	ENSGT00410000025802 #22	ENSGT00940000155657	ENSGT00950000183041.C	ENSGT00390000000924	ENSGT00940000155186	ENSGT00940000166544	ENSGT00940000156102.r
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	1378															ENSAMXG00000029981	ENSAMXG00000033588 #22	wdr45 (ENSAMXG00000032671)	zcchc9 (ENSAMXG00000008493)	atg10 (ENSAMXG00000029955)	tmem167a (ENSAMXG00000008525)	xrcc4 (ENSAMXG00000031991)	vcanb (ENSAMXG00000008561)	HAPLN1 (ENSAMXG00000008622)	EDIL3 (ENSAMXG00000043126)	mef2ca (ENSAMXG00000037913)	cetn3 (ENSAMXG00000033199)	arrdc3b (ENSAMXG00000035285)	ENSAMXG00000025614	MCTP1 (ENSAMXG00000032688)	ENSAMXG00000033916	cldn5b (ENSAMXG00000043645)
Mexicana tetra	MODERN SPECIES	772															stc1l (ENSAMXG00000008400)	ENSAMXG00000037753 #22	wdr45 (ENSAMXG00000041775)	zcchc9 (ENSAMXG00000043747)
Red-bellied piranha	MODERN SPECIES	29	mrpl3 (ENSPNAG00000000723)	CPNE4 (ENSPNAG00000000747)	dync1li1 (ENSPNAG00000008206)	nedd9 (ENSPNAG00000008222)	TMEM170B (ENSPNAG00000008226)	HIVEP1 (ENSPNAG00000000805)	edn1 (ENSPNAG00000008243)	zgc:86598 (ENSPNAG00000000834)	si:ch211-133n4.6 (ENSPNAG00000008273)	ENSPNAG00000000874	si:ch211-80h18.1 (ENSPNAG00000000901)	hsf1 (ENSPNAG00000001048)	scxa (ENSPNAG00000008512)	bop1 (ENSPNAG00000008525)	stc1l (ENSPNAG00000008600)	ENSPNAG00000008615 #22	wdr45 (ENSPNAG00000008648)	zcchc9 (ENSPNAG00000008675)	atg10 (ENSPNAG00000008684)	tmem167a (ENSPNAG00000008703)	xrcc4 (ENSPNAG00000001166)	vcanb (ENSPNAG00000008733)	HAPLN1 (ENSPNAG00000008773)	EDIL3 (ENSPNAG00000008791)	RASA1 (ENSPNAG00000008846)	mef2ca (ENSPNAG00000008875)	cetn3 (ENSPNAG00000001230)	arrdc3b (ENSPNAG00000008896)	nr2f1b (ENSPNAG00000008902)	TLR8 (ENSPNAG00000008909)	MCTP1 (ENSPNAG00000001256)
Electric eel	MODERN SPECIES	152															stc1l (ENSEEEG00000003578)	ENSEEEG00000003575 #22	wdr45 (ENSEEEG00000003110)	zcchc9 (ENSEEEG00000003082)	mat2al (ENSEEEG00000003078)	si:ch73-234b20.5 (ENSEEEG00000003077)	hnrnpd (ENSEEEG00000003071)	hnrnpdl (ENSEEEG00000003047)	enoph1 (ENSEEEG00000003039)	TMEM150C (ENSEEEG00000003036)	SCD5 (ENSEEEG00000002848)	sec31a (ENSEEEG00000002729)	snx30 (ENSEEEG00000002590)	SLC46A2 (ENSEEEG00000002586)	palm2akap2 (ENSEEEG00000002585)	ENSEEEG00000002583	PLPPR1 (ENSEEEG00000002579)
Channel catfish	MODERN SPECIES	7	ripply3 (ENSIPUG00000008071)	PIGP (ENSIPUG00000008079)	ENSIPUG00000008117	vps26c (ENSIPUG00000008327)	dyrk1aa (ENSIPUG00000008410)	kcnj6 (ENSIPUG00000008432)	Kcnj15 (ENSIPUG00000008442)	erg (ENSIPUG00000008460)	ETS2 (ENSIPUG00000008530)	psmg1 (ENSIPUG00000008576)	mpzl1 (ENSIPUG00000008636)	klhl35 (ENSIPUG00000008679)	LRRC32 (ENSIPUG00000008695)	emsy (ENSIPUG00000008712)	ENSIPUG00000008766	ENSIPUG00000008791 #22	wdr45 (ENSIPUG00000008804)	stc (ENSIPUG00000008855)	zcchc9 (ENSIPUG00000008877)	atg10 (ENSIPUG00000008886)	ENSIPUG00000008898	tmem167a (ENSIPUG00000008918)	ENSIPUG00000008955	ENSIPUG00000008963	uspl1 (ENSIPUG00000008996)	ENSIPUG00000009039	Rhbdd2 (ENSIPUG00000009070)	tmem120a (ENSIPUG00000009088)	prr11 (ENSIPUG00000009173)	smg8 (ENSIPUG00000009189)	ypel2 (ENSIPUG00000009206)
Denticle herring	MODERN SPECIES	13	atp6v1b2 (ENSDCDG00000035289)	stambpa (ENSDCDG00000035283)	dusp11 (ENSDCDG00000035278)	ENSDCDG00000035272	tcf7l1a (ENSDCDG00000035251)	dbnla (ENSDCDG00000035249)	cox5ba (ENSDCDG00000035248)	npy8ar (ENSDCDG00000035247)	marchf5l (ENSDCDG00000035246)	actr1b (ENSDCDG00000035240)	kctd9b (ENSDCDG00000035235)	fgfr1b (ENSDCDG00000031519)	stc1l (ENSDCDG00000031253)	RHOBTB2 (ENSDCDG00000031245)	ENSDCDG00000031014	LAGE3 (ENSDCDG00000031010) #22	zgc:100918 (ENSDCDG00000030981)	wdr45 (ENSDCDG00000030977)	ENSDCDG00000030976	zcchc9 (ENSDCDG00000030974)	ACOT12 (ENSDCDG00000030971)	ENSDCDG00000029761	atg10 (ENSDCDG00000029735)	tmem167a (ENSDCDG00000029734)	xrcc4 (ENSDCDG00000029732)	HAPLN1 (ENSDCDG00000029728)	EDIL3 (ENSDCDG00000029725)	RASA1 (ENSDCDG00000028992)	mef2ca (ENSDCDG00000028943)	cetn3 (ENSDCDG00000028937)	arrdc3b (ENSDCDG00000028936)
Reedfish	MODERN SPECIES	2	zgc:100829 (ENSECRG00000008708)	ENSECRG00000008699	CXXC5 (ENSECRG00000008691)	ENSECRG00000008679	ENSECRG00000008675	ENSECRG00000008670	ppp3ca (ENSECRG00000008639)	STING1 (ENSECRG00000008622)	ENSECRG00000008616	dnajc18 (ENSECRG00000008605)	ENSECRG00000008590	slc23a1 (ENSECRG00000008421)	ENSECRG00000008337	ENSECRG00000010763 #21	ENSECRG00000010753	ENSECRG00000010749 #22	ENSECRG00000010731	wdr45 (ENSECRG00000010700)	ENSECRG00000010673	sephs3 (ENSECRG00000010661)	ssr4 (ENSECRG00000010653)	ikbkg (ENSECRG00000010631) #17	G6PD (ENSECRG00000010607) #18	ENSECRG00000010589	naa10 (ENSECRG00000010563)	zgc:103759 (ENSECRG00000010530)	zgc:103759 (ENSECRG00000010513)	ARHGAP4 (ENSECRG00000010487)	ENSECRG00000010474	cav4b (ENSECRG00000010466)	AVPR2 (ENSECRG00000010459)
Elephant shark	MODERN SPECIES	1176																ENSCMIG00000001413 #22