Eutheria	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00940000178388	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00730000111729	ENSGT00940000155824.C #31	ENSGT00940000165766	ENSGT00390000002919 #32
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00940000164770	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Primates	ANCESTRAL SPECIES	4	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00730000111729	ENSGT00940000155824.C #31	ENSGT00940000165766	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000159209 #8	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.ac ##24	ENSGT00730000111729	ENSGT00940000155272.`c.b #30	ENSGT00940000155824.C #31
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac ##24	ENSGT00860000135787	ENSGT00940000155272.`c.b #30	ENSGT00730000111729	ENSGT00940000155824.C #31
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac ##24	ENSGT00860000135787	ENSGT00940000155272.`c.b #30	ENSGT00730000111729	ENSGT00940000155824.C #31
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac ##24	ENSGT00730000111729	ENSGT00940000155272.`c.b #30	ENSGT00940000155824.C #31	ENSGT00390000002919.u #32	ENSGT00390000002919.v.b.b ##32	ENSGT00940000158787.nb #33
Olive baboon	MODERN SPECIES		CITED4 (ENSPANG00000008319) #7	KCNQ4 (ENSPANG00000006225) #8	NFYC (ENSPANG00000026473) #9	RIMS3 (ENSPANG00000010023) #10	ZNF684 (ENSPANG00000018123) #11	EXO5 (ENSPANG00000032341) #12	ZFP69 (ENSPANG00000048994) #13	ZFP69B (ENSPANG00000018450) #14	COL9A2 (ENSPANG00000007011) #15	ZMPSTE24 (ENSPANG00000007506) #16	TMCO2 (ENSPANG00000006394) #17	RLF (ENSPANG00000018124) #18	PPT1 (ENSPANG00000017273) #19	CAP1 (ENSPANG00000006452) #20	MFSD2A (ENSPANG00000011715) #21	MYCL (ENSPANG00000042839) #22	TRIT1 (ENSPANG00000018125) #23	ENSPANG00000010056 #24	PPIE (ENSPANG00000000575) #25	HPCAL4 (ENSPANG00000006453) #26	NT5C1A (ENSPANG00000025518) #27	HEYL (ENSPANG00000006227) #28	PABPC4 (ENSPANG00000009484) #29	ENSPANG00000006813 #30	MACF1 (ENSPANG00000019093) #31	ENSPANG00000019099 #32	AKIRIN1 (ENSPANG00000004583) #33	RHBDL2 (ENSPANG00000034798) #34	GJA9 (ENSPANG00000006763) #35	ENSPANG00000029466 #36	RRAGC (ENSPANG00000017086) #37
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00910000147126	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac ##24	ENSGT00730000111729	ENSGT00940000155824.C #31	ENSGT00390000002919.v.b.b ##32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34
Sooty mangabey	MODERN SPECIES	227	KCNQ4 (ENSCATG00000038249) #8	NFYC (ENSCATG00000032882) #9	RIMS3 (ENSCATG00000017445) #10	ZNF684 (ENSCATG00000032130) #11	EXO5 (ENSCATG00000003100) #12	ZFP69 (ENSCATG00000030938) #13	ZFP69B (ENSCATG00000032477) #14	SMAP2 (ENSCATG00000039372)	COL9A2 (ENSCATG00000032540) #15	ZMPSTE24 (ENSCATG00000043666) #16	TMCO2 (ENSCATG00000044427) #17	RLF (ENSCATG00000032206) #18	PPT1 (ENSCATG00000035844) #19	ENSCATG00000035987 #20	MFSD2A (ENSCATG00000032272) #21	MYCL (ENSCATG00000033384) #22	TRIT1 (ENSCATG00000034344) #23	ENSCATG00000037613 #24	PPIE (ENSCATG00000034495) #25	ENSCATG00000032456	HPCAL4 (ENSCATG00000032488) #26	NT5C1A (ENSCATG00000038875) #27	ENSCATG00000036036	HEYL (ENSCATG00000037907) #28	ENSCATG00000005536	ENSCATG00000002769	PABPC4 (ENSCATG00000042164) #29	ENSCATG00000033745 ##24	MACF1 (ENSCATG00000039558) #31	ENSCATG00000043856	NDUFS5 (ENSCATG00000034399) ##32
Drill	MODERN SPECIES	672	NFYC (ENSMLEG00000038570) #9	RIMS3 (ENSMLEG00000042796) #10	ENSMLEG00000041734	ZNF684 (ENSMLEG00000035552) #11	EXO5 (ENSMLEG00000001570) #12	ZFP69 (ENSMLEG00000042959) #13	ZFP69B (ENSMLEG00000014259) #14	SMAP2 (ENSMLEG00000032355)	COL9A2 (ENSMLEG00000035440) #15	ZMPSTE24 (ENSMLEG00000037696) #16	TMCO2 (ENSMLEG00000034301) #17	RLF (ENSMLEG00000040465) #18	ENSMLEG00000043746 #19	CAP1 (ENSMLEG00000044449) #20	MFSD2A (ENSMLEG00000040826) #21	MYCL (ENSMLEG00000017162) #22	TRIT1 (ENSMLEG00000035296) #23	ENSMLEG00000044426 ##24	PPIE (ENSMLEG00000040735) #25	ENSMLEG00000040607	NT5C1A (ENSMLEG00000038970) #27	ENSMLEG00000032704	HEYL (ENSMLEG00000032705) #28	PABPC4 (ENSMLEG00000040716) #29	ENSMLEG00000006499	MACF1 (ENSMLEG00000044445) #31	ENSMLEG00000040128	ENSMLEG00000043083	AKIRIN1 (ENSMLEG00000044218) #33	RHBDL2 (ENSMLEG00000010184) #34	GJA9 (ENSMLEG00000004074) #35
Macaca	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.`c.b #30	ENSGT00940000155824.C #31	ENSGT00390000002919.u #32	ENSGT00390000002919.v.b.a.b ##32
Pig-tailed macaque	MODERN SPECIES	217	KCNQ4 (ENSMNEG00000018935) #8	NFYC (ENSMNEG00000027645) #9	RIMS3 (ENSMNEG00000034822) #10	ZNF684 (ENSMNEG00000044680) #11	EXO5 (ENSMNEG00000008813) #12	ZFP69 (ENSMNEG00000036561) #13	ZFP69B (ENSMNEG00000017249) #14	SMAP2 (ENSMNEG00000032255)	COL9A2 (ENSMNEG00000043170) #15	ZMPSTE24 (ENSMNEG00000038045) #16	TMCO2 (ENSMNEG00000034686) #17	RLF (ENSMNEG00000043618) #18	PPT1 (ENSMNEG00000036176) #19	CAP1 (ENSMNEG00000036964) #20	MFSD2A (ENSMNEG00000028513) #21	MYCL (ENSMNEG00000032787) #22	TRIT1 (ENSMNEG00000023137) #23	ENSMNEG00000034094 #24	PPIE (ENSMNEG00000031362) #25	ENSMNEG00000033191	HPCAL4 (ENSMNEG00000028502) #26	ENSMNEG00000002154	NT5C1A (ENSMNEG00000031973) #27	HEYL (ENSMNEG00000009070) #28	ENSMNEG00000043139	PABPC4 (ENSMNEG00000043054) #29	ENSMNEG00000043485 #30	ENSMNEG00000038372	ENSMNEG00000035118	MACF1 (ENSMNEG00000033514) #31	NDUFS5 (ENSMNEG00000027516) ##32
Macaca_a	ANCESTRAL SPECIES		ENSGT01030000238095.b	ENSGT00940000159332 #10	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.b.b.a.a.d	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT01100000263493.a.a.a.b.b.b.b.a.a.a.a.a.b	ENSGT00940000158613 #22	ENSGT01100000263493.a.a.a.b.a.a.a.a.a.a.b.a.a	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.`c.b #30	ENSGT00940000155824.C #31	ENSGT00390000002919.u #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000050468	ZNF684 (ENSMFAG00000000321) #11	EXO5 (ENSMFAG00000008984) #12	ZFP69 (ENSMFAG00000038294) #13	SMAP2 (ENSMFAG00000044100)	COL9A2 (ENSMFAG00000028569) #15	ZMPSTE24 (ENSMFAG00000044167) #16	ENSMFAG00000053876	TMCO2 (ENSMFAG00000038683) #17	RLF (ENSMFAG00000001299) #18	PPT1 (ENSMFAG00000029038) #19	CAP1 (ENSMFAG00000036663) #20	MFSD2A (ENSMFAG00000003330) #21	ENSMFAG00000058771	ENSMFAG00000063746	MYCL (ENSMFAG00000029625) #22	ENSMFAG00000052885	TRIT1 (ENSMFAG00000001316) #23	ENSMFAG00000058462	ENSMFAG00000041908 #24	ENSMFAG00000031586	PPIE (ENSMFAG00000002082) #25	HPCAL4 (ENSMFAG00000033968) #26	NT5C1A (ENSMFAG00000056414) #27	HEYL (ENSMFAG00000045585) #28	PABPC4 (ENSMFAG00000041481) #29	ENSMFAG00000002753 #30	MACF1 (ENSMFAG00000036050) #31	NDUFS5 (ENSMFAG00000027526) #32	ENSMFAG00000057367	AKIRIN1 (ENSMFAG00000038417) #33
Rhesus	MODERN SPECIES		ENSMMUG00000050602	ZNF684 (ENSMMUG00000009234) #11	EXO5 (ENSMMUG00000020398) #12	ZFP69B (ENSMMUG00000005836) #14	ENSMMUG00000057845	SMAP2 (ENSMMUG00000013839)	COL9A2 (ENSMMUG00000018664) #15	ZMPSTE24 (ENSMMUG00000005992) #16	TMCO2 (ENSMMUG00000052510) #17	RLF (ENSMMUG00000032180) #18	PPT1 (ENSMMUG00000009189) #19	CAP1 (ENSMMUG00000009188) #20	MFSD2A (ENSMMUG00000011264) #21	ENSMMUG00000053512	ENSMMUG00000060377	MYCL (ENSMMUG00000016223) #22	ENSMMUG00000054563	ENSMMUG00000051893	TRIT1 (ENSMMUG00000016220) #23	ENSMMUG00000063318	ENSMMUG00000058881 #24	PPIE (ENSMMUG00000018869) #25	HPCAL4 (ENSMMUG00000044273) #26	NT5C1A (ENSMMUG00000056128) #27	HEYL (ENSMMUG00000050019) #28	PABPC4 (ENSMMUG00000007497) #29	ENSMMUG00000064543 #30	MACF1 (ENSMMUG00000009562) #31	ENSMMUG00000057080	AKIRIN1 (ENSMMUG00000009373) #33	RHBDL2 (ENSMMUG00000032188) #34
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	203	TEX13A (ENSCSAG00000009316)	IL1RAPL2 (ENSCSAG00000009308)	NRK (ENSCSAG00000009300)	SERPINA7 (ENSCSAG00000009284)	PWWP3B (ENSCSAG00000000313)	RADX (ENSCSAG00000009278)	RNF128 (ENSCSAG00000009266)	TBC1D8B (ENSCSAG00000009258)	RIPPLY1 (ENSCSAG00000009244)	CLDN2 (ENSCSAG00000009239)	MORC4 (ENSCSAG00000009210)	RBM41 (ENSCSAG00000009146)	ENSCSAG00000000312	NUP62CL (ENSCSAG00000009139)	DNAAF6 (ENSCSAG00000009129)	ENSCSAG00000000311 #22	FRMPD3 (ENSCSAG00000009116)	ENSCSAG00000009089	TSC22D3 (ENSCSAG00000009042)	NCBP2L (ENSCSAG00000000310)	MID2 (ENSCSAG00000009033)	TEX13B (ENSCSAG00000009020)	VSIG1 (ENSCSAG00000009001)	PSMD10 (ENSCSAG00000008981)	ATG4A (ENSCSAG00000008949)	ENSCSAG00000008885	COL4A5 (ENSCSAG00000008871)	IRS4 (ENSCSAG00000000309)	GUCY2F (ENSCSAG00000008852)	NXT2 (ENSCSAG00000008842)	KCNE5 (ENSCSAG00000000308)
Vervet Monkey	MODERN SPECIES	12	NFYC (ENSCSAG00000001152) #9	RIMS3 (ENSCSAG00000001151) #10	ZNF684 (ENSCSAG00000001150) #11	EXO5 (ENSCSAG00000000137) #12	ZFP69 (ENSCSAG00000001149) #13	ZFP69B (ENSCSAG00000001148) #14	SMAP2 (ENSCSAG00000001147)	COL9A2 (ENSCSAG00000001146) #15	ZMPSTE24 (ENSCSAG00000001145) #16	TMCO2 (ENSCSAG00000001144) #17	RLF (ENSCSAG00000001143) #18	ENSCSAG00000001142	PPT1 (ENSCSAG00000001141) #19	CAP1 (ENSCSAG00000001140) #20	MFSD2A (ENSCSAG00000001139) #21	MYCL (ENSCSAG00000001138) #22	TRIT1 (ENSCSAG00000001137) #23	ENSCSAG00000001136 #24	PABPC4 (ENSCSAG00000001135) #29	HEYL (ENSCSAG00000001134) #28	NT5C1A (ENSCSAG00000001133) #27	HPCAL4 (ENSCSAG00000001132) #26	PPIE (ENSCSAG00000001131) #25	ENSCSAG00000001130 #24	ENSCSAG00000001129	MACF1 (ENSCSAG00000001128) #31	AKIRIN1 (ENSCSAG00000001126) #33	RHBDL2 (ENSCSAG00000001125) #34	GJA9 (ENSCSAG00000000136) #35	MYCBP (ENSCSAG00000001124)	RRAGC (ENSCSAG00000001123) #37
Rhinopithecus	ANCESTRAL SPECIES	76	ENSGT00940000159332 #10	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s #20	ENSGT00390000005318.b.b.b #21	ENSGT00550000076451.a.a.b	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b	ENSGT00940000155272.ac ##24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787
Black snub-nosed monkey	MODERN SPECIES	443	NFYC (ENSRBIG00000042960) #9	RIMS3 (ENSRBIG00000031605) #10	ENSRBIG00000038649	ZNF684 (ENSRBIG00000040446) #11	ZFP69 (ENSRBIG00000031369) #13	ZFP69B (ENSRBIG00000033501) #14	SMAP2 (ENSRBIG00000031486)	COL9A2 (ENSRBIG00000030760) #15	ZMPSTE24 (ENSRBIG00000021858) #16	TMCO2 (ENSRBIG00000037974) #17	RLF (ENSRBIG00000036531) #18	PPT1 (ENSRBIG00000035690) #19	CAP1 (ENSRBIG00000028175) #20	MFSD2A (ENSRBIG00000027966) #21	ENSRBIG00000039892	MYCL (ENSRBIG00000043373) #22	TRIT1 (ENSRBIG00000043179) #23
Golden snub-nosed monkey	MODERN SPECIES	2906	NFYC (ENSRROG00000044562) #9	RIMS3 (ENSRROG00000044320) #10	ZNF684 (ENSRROG00000032375) #11	EXO5 (ENSRROG00000003374) #12	ZFP69 (ENSRROG00000001028) #13	ZFP69B (ENSRROG00000035064) #14	SMAP2 (ENSRROG00000044815)	COL9A2 (ENSRROG00000001908) #15	ZMPSTE24 (ENSRROG00000029334) #16	TMCO2 (ENSRROG00000041961) #17	RLF (ENSRROG00000028839) #18	PPT1 (ENSRROG00000019913) #19	CAP1 (ENSRROG00000037313) #20	MFSD2A (ENSRROG00000045774) #21	ENSRROG00000042951	MYCL (ENSRROG00000039181) #22	TRIT1 (ENSRROG00000042670) #23	ENSRROG00000036368 #24	PPIE (ENSRROG00000044935) #25	HPCAL4 (ENSRROG00000039612) #26	ENSRROG00000044816	NT5C1A (ENSRROG00000029433) #27	HEYL (ENSRROG00000035732) #28	PABPC4 (ENSRROG00000033355) #29	ENSRROG00000036630	ENSRROG00000035560 ##24
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000159209 #8	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000159209 #8	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s.a #20	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.b.b.a	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.ec.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.dc #24	ENSGT00390000009130.a.b	ENSGT00940000155272.ec.b #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32
Gorilla	MODERN SPECIES		ENSGGOG00000007360 #9	RIMS3 (ENSGGOG00000009986) #10	ZNF684 (ENSGGOG00000022914) #11	EXO5 (ENSGGOG00000024174) #12	ZFP69 (ENSGGOG00000006972) #13	ZFP69B (ENSGGOG00000039613) #14	SMAP2 (ENSGGOG00000004018)	COL9A2 (ENSGGOG00000002596) #15	ZMPSTE24 (ENSGGOG00000002591) #16	TMCO2 (ENSGGOG00000015048) #17	RLF (ENSGGOG00000015221) #18	PPT1 (ENSGGOG00000025819) #19	CAP1 (ENSGGOG00000027527) #20	ENSGGOG00000023672	MFSD2A (ENSGGOG00000015275) #21	MYCL (ENSGGOG00000001693) #22	TRIT1 (ENSGGOG00000010070) #23	BMP8A (ENSGGOG00000015791) #24	PPIE (ENSGGOG00000015783) #25	ENSGGOG00000039917	NT5C1A (ENSGGOG00000008274) #27	HEYL (ENSGGOG00000008268) #28	PABPC4 (ENSGGOG00000004002) #29	ENSGGOG00000039231	ENSGGOG00000039286	MACF1 (ENSGGOG00000022652) #31	AKIRIN1 (ENSGGOG00000006053) #33	RHBDL2 (ENSGGOG00000009504) #34	GJA9 (ENSGGOG00000005807) #35	MYCBP (ENSGGOG00000005810)	RRAGC (ENSGGOG00000013382) #37
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s.a #20	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.b.b.a	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272.ec.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ec.b #24	ENSGT00860000135787	ENSGT00940000155272.dc #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32
Pan	ANCESTRAL SPECIES		ENSGT00940000155689.c #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.s.a #20	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.b.b.a	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.ec.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.dc #24	ENSGT00390000009130.a.b	ENSGT00940000155272.ec.b #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32
Bonobo	MODERN SPECIES		CTPS1 (ENSPPAG00000028405)	KCNQ4 (ENSPPAG00000041138) #8	ENSPPAG00000032067 #9	RIMS3 (ENSPPAG00000040113) #10	ZNF684 (ENSPPAG00000030066) #11	ZFP69 (ENSPPAG00000028849) #13	ZFP69B (ENSPPAG00000040903) #14	SMAP2 (ENSPPAG00000033555)	COL9A2 (ENSPPAG00000042613) #15	ZMPSTE24 (ENSPPAG00000034912) #16	TMCO2 (ENSPPAG00000028744) #17	RLF (ENSPPAG00000032318) #18	PPT1 (ENSPPAG00000040559) #19	CAP1 (ENSPPAG00000033903) #20	MFSD2A (ENSPPAG00000037970) #21	MYCL (ENSPPAG00000029651) #22	TRIT1 (ENSPPAG00000023930) #23	ENSPPAG00000008285	PPIE (ENSPPAG00000042403) #25	ENSPPAG00000018066	HPCAL4 (ENSPPAG00000030421) #26	NT5C1A (ENSPPAG00000042148) #27	HEYL (ENSPPAG00000029785) #28	PABPC4 (ENSPPAG00000043625) #29	ENSPPAG00000017922	ENSPPAG00000039451	ENSPPAG00000030685 #24	ENSPPAG00000037863	MACF1 (ENSPPAG00000032133) #31	NDUFS5 (ENSPPAG00000030074) #32	AKIRIN1 (ENSPPAG00000033039) #33
Chimpanzee	MODERN SPECIES		NFYC (ENSPTRG00000000596) #9	RIMS3 (ENSPTRG00000000594) #10	ZNF684 (ENSPTRG00000000593) #11	EXO5 (ENSPTRG00000000592) #12	ZFP69 (ENSPTRG00000000591) #13	ZFP69B (ENSPTRG00000000590) #14	SMAP2 (ENSPTRG00000000589)	COL9A2 (ENSPTRG00000044977) #15	ZMPSTE24 (ENSPTRG00000000587) #16	TMCO2 (ENSPTRG00000000586) #17	RLF (ENSPTRG00000000585) #18	PPT1 (ENSPTRG00000000584) #19	CAP1 (ENSPTRG00000000583) #20	ENSPTRG00000046517	MFSD2A (ENSPTRG00000000581) #21	MYCL (ENSPTRG00000000580) #22	TRIT1 (ENSPTRG00000000579) #23	BMP8B (ENSPTRG00000000578) #24	PPIE (ENSPTRG00000000577) #25	ENSPTRG00000044983	HPCAL4 (ENSPTRG00000000576) #26	NT5C1A (ENSPTRG00000000575) #27	HEYL (ENSPTRG00000047504) #28	PABPC4 (ENSPTRG00000000573) #29	ENSPTRG00000049535	ENSPTRG00000000572 #24	MACF1 (ENSPTRG00000043118) #31	NDUFS5 (ENSPTRG00000000568) #32	ENSPTRG00000052337 #33	RHBDL2 (ENSPTRG00000000566) #34	GJA9 (ENSPTRG00000034043) #35
Human	MODERN SPECIES		KCNQ4 (ENSG00000117013) #8	NFYC (ENSG00000066136) #9	RIMS3 (ENSG00000117016) #10	ZNF684 (ENSG00000117010) #11	EXO5 (ENSG00000164002) #12	ZFP69 (ENSG00000187815) #13	ZFP69B (ENSG00000187801) #14	SMAP2 (ENSG00000084070)	COL9A2 (ENSG00000049089) #15	ZMPSTE24 (ENSG00000084073) #16	TMCO2 (ENSG00000188800) #17	RLF (ENSG00000117000) #18	PPT1 (ENSG00000131238) #19	CAP1 (ENSG00000131236) #20	MFSD2A (ENSG00000168389) #21	MYCL (ENSG00000116990) #22	TRIT1 (ENSG00000043514) #23	OXCT2 (ENSG00000198754)	BMP8B (ENSG00000116985) #24	PPIE (ENSG00000084072) #25	HPCAL4 (ENSG00000116983) #26	NT5C1A (ENSG00000116981) #27	HEYL (ENSG00000163909) #28	PABPC4 (ENSG00000090621) #29	BMP8A (ENSG00000183682) #24	MACF1 (ENSG00000127603) #31	NDUFS5 (ENSG00000168653) #32	AKIRIN1 (ENSG00000174574) #33	RHBDL2 (ENSG00000158315) #34	GJA9 (ENSG00000131233) #35	ENSG00000274944
Orangutan	MODERN SPECIES		NFYC (ENSPPYG00000001483) #9	RIMS3 (ENSPPYG00000001485) #10	ZNF684 (ENSPPYG00000001486) #11	EXO5 (ENSPPYG00000001487) #12	ENSPPYG00000035572	ZFP69 (ENSPPYG00000001488) #13	ZFP69B (ENSPPYG00000001489) #14	SMAP2 (ENSPPYG00000001490)	COL9A2 (ENSPPYG00000001491) #15	ZMPSTE24 (ENSPPYG00000001492) #16	TMCO2 (ENSPPYG00000001493) #17	RLF (ENSPPYG00000001494) #18	PPT1 (ENSPPYG00000030814) #19	CAP1 (ENSPPYG00000001496) #20	ENSPPYG00000001497 #21	MYCL (ENSPPYG00000032517) #22	TRIT1 (ENSPPYG00000001499) #23	ENSPPYG00000001500 #24	PPIE (ENSPPYG00000001501) #25	HPCAL4 (ENSPPYG00000001503) #26	NT5C1A (ENSPPYG00000001504) #27	HEYL (ENSPPYG00000001505) #28	PABPC4 (ENSPPYG00000001506) #29	ENSPPYG00000037293 #25	ENSPPYG00000033182	ENSPPYG00000001507 #24	MACF1 (ENSPPYG00000001509) #31	NDUFS5 (ENSPPYG00000001511) #33	RHBDL2 (ENSPPYG00000001512) #34	GJA9 (ENSPPYG00000001514) #35	MYCBP (ENSPPYG00000001515)
Gibbon	MODERN SPECIES	2	ENSNLEG00000012195 #9	RIMS3 (ENSNLEG00000012190) #10	ZNF684 (ENSNLEG00000012187) #11	EXO5 (ENSNLEG00000028361) #12	ZFP69 (ENSNLEG00000012184) #13	ZFP69B (ENSNLEG00000034783) #14	SMAP2 (ENSNLEG00000032450)	COL9A2 (ENSNLEG00000012137) #15	ZMPSTE24 (ENSNLEG00000012132) #16	TMCO2 (ENSNLEG00000012130) #17	RLF (ENSNLEG00000012124) #18	PPT1 (ENSNLEG00000012121) #19	CAP1 (ENSNLEG00000012077) #20	ENSNLEG00000012076	ENSNLEG00000012066 #21	MYCL (ENSNLEG00000012063) #22	TRIT1 (ENSNLEG00000012038) #23	OXCT2 (ENSNLEG00000012037)	ENSNLEG00000012019 #24	PPIE (ENSNLEG00000011979) #25	ENSNLEG00000028202 #26	ENSNLEG00000028855	NT5C1A (ENSNLEG00000011971) #27	HEYL (ENSNLEG00000011965) #28	PABPC4 (ENSNLEG00000011928) #29	MACF1 (ENSNLEG00000011857) #31	ENSNLEG00000034249	AKIRIN1 (ENSNLEG00000035139) #33	ENSNLEG00000011848	RHBDL2 (ENSNLEG00000011836) #34	GJA9 (ENSNLEG00000011831) #35
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099.g #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387.a	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.q.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.yb #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.xb #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919.q #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00940000165268 #36
Mas night monkey	MODERN SPECIES	604	CITED4 (ENSANAG00000036146) #7	KCNQ4 (ENSANAG00000021072) #8	NFYC (ENSANAG00000020951) #9	RIMS3 (ENSANAG00000029140) #10	ENSANAG00000020223 #11	ZFP69 (ENSANAG00000027896) #13	ZFP69B (ENSANAG00000033029) #14	SMAP2 (ENSANAG00000035291)	COL9A2 (ENSANAG00000036329) #15	ZMPSTE24 (ENSANAG00000027026) #16	TMCO2 (ENSANAG00000033235) #17	RLF (ENSANAG00000031894) #18	PPT1 (ENSANAG00000026377) #19	ENSANAG00000036880 #20	MFSD2A (ENSANAG00000034076) #21	MYCL (ENSANAG00000035601) #22	TRIT1 (ENSANAG00000030732) #23	ENSANAG00000026668 #24	PPIE (ENSANAG00000033595) #25	HPCAL4 (ENSANAG00000025899) #26	NT5C1A (ENSANAG00000037589) #27	ENSANAG00000035822	HEYL (ENSANAG00000019401) #28	PABPC4 (ENSANAG00000025079) #29	ENSANAG00000034394 #24	ENSANAG00000034250	MACF1 (ENSANAG00000033273) #31	ENSANAG00000006239	ENSANAG00000000718	ENSANAG00000030654 #32	AKIRIN1 (ENSANAG00000024590) #33
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099.g #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387.a	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.q.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.xb #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.yb #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919.q #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00940000165268 #36
Marmoset	MODERN SPECIES	19	NFYC (ENSCJAG00000002987) #9	RIMS3 (ENSCJAG00000002973) #10	ZNF684 (ENSCJAG00000002965) #11	EXO5 (ENSCJAG00000002961) #12	ZFP69 (ENSCJAG00000062374) #13	ZFP69B (ENSCJAG00000002952) #14	SMAP2 (ENSCJAG00000002908)	COL9A2 (ENSCJAG00000002851) #15	ENSCJAG00000075493	ZMPSTE24 (ENSCJAG00000002833) #16	TMCO2 (ENSCJAG00000002830) #17	RLF (ENSCJAG00000042605) #18	PPT1 (ENSCJAG00000002798) #19	CAP1 (ENSCJAG00000002738) #20	MFSD2A (ENSCJAG00000002712) #21	MYCL (ENSCJAG00000002700) #22	TRIT1 (ENSCJAG00000002620) #23	PPIE (ENSCJAG00000002589) #25	HPCAL4 (ENSCJAG00000041542) #26	NT5C1A (ENSCJAG00000002566) #27	HEYL (ENSCJAG00000065395) #28	ENSCJAG00000002512 #29	ENSCJAG00000002504 #24	ENSCJAG00000083308	MACF1 (ENSCJAG00000002323) #31	ENSCJAG00000045917 #32	ENSCJAG00000043919 #33	ENSCJAG00000082857	RHBDL2 (ENSCJAG00000002293) #34	GJA9 (ENSCJAG00000002288) #35	ENSCJAG00000073854 #36
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099.g #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387.a	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.q.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.xb #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.yb #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919.q.c #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37
Bolivian squirrel monkey	MODERN SPECIES	130	KCNQ4 (ENSSBOG00000028751) #8	NFYC (ENSSBOG00000023269) #9	RIMS3 (ENSSBOG00000013055) #10	ENSSBOG00000036155 #11	EXO5 (ENSSBOG00000009084) #12	ZFP69 (ENSSBOG00000021129) #13	ZFP69B (ENSSBOG00000029619) #14	SMAP2 (ENSSBOG00000002291)	ENSSBOG00000034698	ZMPSTE24 (ENSSBOG00000026426) #16	TMCO2 (ENSSBOG00000036191) #17	RLF (ENSSBOG00000004728) #18	PPT1 (ENSSBOG00000031697) #19	ENSSBOG00000023387 #20	MFSD2A (ENSSBOG00000034208) #21	MYCL (ENSSBOG00000031434) #22	TRIT1 (ENSSBOG00000024417) #23	PPIE (ENSSBOG00000035061) #25	HPCAL4 (ENSSBOG00000028543) #26	NT5C1A (ENSSBOG00000034033) #27	HEYL (ENSSBOG00000035072) #28	PABPC4 (ENSSBOG00000026193) #29	ENSSBOG00000023286 #24	MACF1 (ENSSBOG00000035552) #31	ENSSBOG00000026836	ENSSBOG00000031752 #32	AKIRIN1 (ENSSBOG00000032907) #33	RHBDL2 (ENSSBOG00000026311) #34	MYCBP (ENSSBOG00000030077)	RRAGC (ENSSBOG00000031005) #37	ENSSBOG00000028225
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	417				PEG3 (ENSCCAG00000020951)	USP29 (ENSCCAG00000026926)	ZIM3 (ENSCCAG00000003242)	DUXA (ENSCCAG00000026561)	ZNF805 (ENSCCAG00000028923)	ENSCCAG00000031865	ZNF460 (ENSCCAG00000026058)	ZNF543 (ENSCCAG00000032664)	ZNF304 (ENSCCAG00000030189)	ZNF547 (ENSCCAG00000029131)	ZNF548 (ENSCCAG00000034176)	ZNF17 (ENSCCAG00000029826)	ENSCCAG00000025374 #22	ZNF749 (ENSCCAG00000037226)	ZNF772 (ENSCCAG00000030037)	ZNF773 (ENSCCAG00000026031)	ZNF549 (ENSCCAG00000021580)	ZNF550 (ENSCCAG00000026475)	ZNF416 (ENSCCAG00000034081)	ZIK1 (ENSCCAG00000030178)	ZNF530 (ENSCCAG00000025226)	ZNF134 (ENSCCAG00000001809)	ENSCCAG00000016054	ENSCCAG00000031448	ZSCAN4 (ENSCCAG00000035712)	ZNF551 (ENSCCAG00000030262)	ZNF154 (ENSCCAG00000036986)	ZNF671 (ENSCCAG00000036856)
Capuchin	MODERN SPECIES	385	ENSCCAG00000034355	YARS2 (ENSCCAG00000038073)	PKP2 (ENSCCAG00000019077)	ENSCCAG00000027686 #11	ENSCCAG00000036754 #13	ZFP69B (ENSCCAG00000033657) #14	SMAP2 (ENSCCAG00000037997)	COL9A2 (ENSCCAG00000035153) #15	ZMPSTE24 (ENSCCAG00000024055) #16	TMCO2 (ENSCCAG00000028511) #17	RLF (ENSCCAG00000029606) #18	ENSCCAG00000022725	PPT1 (ENSCCAG00000036658) #19	ENSCCAG00000027519 #20	MFSD2A (ENSCCAG00000030199) #21	MYCL (ENSCCAG00000022829) #22	TRIT1 (ENSCCAG00000031271) #23	ENSCCAG00000035167 #24	PPIE (ENSCCAG00000024434) #25	HPCAL4 (ENSCCAG00000019940) #26	NT5C1A (ENSCCAG00000020441) #27	HEYL (ENSCCAG00000024717) #28	PABPC4 (ENSCCAG00000037306) #29	ENSCCAG00000015253 #24	ENSCCAG00000032988	MACF1 (ENSCCAG00000032251) #31	ENSCCAG00000035166	ENSCCAG00000023836 #32	AKIRIN1 (ENSCCAG00000035175) #33	CMTM4 (ENSCCAG00000025172)	CMTM3 (ENSCCAG00000027209)
Tarsier	MODERN SPECIES	7096																MYCL (ENSTSYG00000009275) #22	TRIT1 (ENSTSYG00000004363) #23	HSPA8 (ENSTSYG00000036507)	CLMP (ENSTSYG00000002660)	GRAMD1B (ENSTSYG00000025695)	SCN3B (ENSTSYG00000000101)	ZNF202 (ENSTSYG00000036828)	ENSTSYG00000031930	OR6M1 (ENSTSYG00000000862)	TMEM225 (ENSTSYG00000002218)	OR8D4 (ENSTSYG00000008358)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00390000009130.a.b	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00390000009130.a.b	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37
Mouse lemur	MODERN SPECIES	11	ENSMICG00000029716	KCNQ4 (ENSMICG00000046630) #8	NFYC (ENSMICG00000004285) #9	RIMS3 (ENSMICG00000004270) #10	ZNF684 (ENSMICG00000044852) #11	ZFP69 (ENSMICG00000007201) #13	ZFP69B (ENSMICG00000042001) #14	SMAP2 (ENSMICG00000015504)	COL9A2 (ENSMICG00000009969) #15	ZMPSTE24 (ENSMICG00000000308) #16	TMCO2 (ENSMICG00000014156) #17	RLF (ENSMICG00000000307) #18	ENSMICG00000000250 #19	CAP1 (ENSMICG00000000248) #20	MFSD2A (ENSMICG00000016306) #21	MYCL (ENSMICG00000030328) #22	TRIT1 (ENSMICG00000016294) #23	ENSMICG00000034577 #24	ENSMICG00000016676	HPCAL4 (ENSMICG00000034680) #26	NT5C1A (ENSMICG00000016662) #27	HEYL (ENSMICG00000030376) #28	ENSMICG00000042198	PABPC4 (ENSMICG00000016633) #29	ENSMICG00000044077	ENSMICG00000043579 #24	MACF1 (ENSMICG00000016523) #31	ENSMICG00000042874	NDUFS5 (ENSMICG00000016518) #32	AKIRIN1 (ENSMICG00000016510) #33	RHBDL2 (ENSMICG00000006246) #34
Lemuriformes_a	ANCESTRAL SPECIES	72	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000154788 #29	ENSGT00940000161351 #28	ENSGT00390000017767.b.b #27	ENSGT00940000161166 #26	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787.nb #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Greater bamboo lemur	MODERN SPECIES	508														ENSPSMG00000011544 #20	MFSD2A (ENSPSMG00000011402) #21	MYCL (ENSPSMG00000011381) #22	TRIT1 (ENSPSMG00000011292) #23
Coquerels sifaka	MODERN SPECIES	357	CTPS1 (ENSPCOG00000028340)	KCNQ4 (ENSPCOG00000021204) #8	NFYC (ENSPCOG00000021083) #9	RIMS3 (ENSPCOG00000028045) #10	ZNF684 (ENSPCOG00000026540) #11	ZFP69 (ENSPCOG00000028710) #13	ZFP69B (ENSPCOG00000017570) #14	SMAP2 (ENSPCOG00000026437)	COL9A2 (ENSPCOG00000022937) #15	ZMPSTE24 (ENSPCOG00000016460) #16	TMCO2 (ENSPCOG00000009437) #17	RLF (ENSPCOG00000027247) #18	PPT1 (ENSPCOG00000010059) #19	CAP1 (ENSPCOG00000009880) #20	MFSD2A (ENSPCOG00000013582) #21	MYCL (ENSPCOG00000021177) #22	TRIT1 (ENSPCOG00000014150) #23	PABPC4 (ENSPCOG00000023725) #29	HEYL (ENSPCOG00000000827) #28	NT5C1A (ENSPCOG00000015476) #27	HPCAL4 (ENSPCOG00000013420) #26	ENSPCOG00000014516	ENSPCOG00000024778	MACF1 (ENSPCOG00000027318) #31	ENSPCOG00000025754	NDUFS5 (ENSPCOG00000016682) #32	AKIRIN1 (ENSPCOG00000028364) #33	RHBDL2 (ENSPCOG00000018792) #34	MYCBP (ENSPCOG00000016054)	ENSPCOG00000007138 #37	POU3F1 (ENSPCOG00000005829)
Bushbaby	MODERN SPECIES	259	CITED4 (ENSOGAG00000024517) #7	KCNQ4 (ENSOGAG00000012616) #8	NFYC (ENSOGAG00000012614) #9	RIMS3 (ENSOGAG00000006117) #10	ENSOGAG00000014249 #11	ZFP69 (ENSOGAG00000009257) #13	ZFP69B (ENSOGAG00000009114) #14	SMAP2 (ENSOGAG00000009115)	COL9A2 (ENSOGAG00000010159) #15	ZMPSTE24 (ENSOGAG00000008841) #16	TMCO2 (ENSOGAG00000002767) #17	RLF (ENSOGAG00000002764) #18	PPT1 (ENSOGAG00000005495) #19	CAP1 (ENSOGAG00000005492) #20	MFSD2A (ENSOGAG00000005489) #21	MYCL (ENSOGAG00000015380) #22	TRIT1 (ENSOGAG00000009571) #23	ENSOGAG00000025082 #24	PPIE (ENSOGAG00000003620) #25	HPCAL4 (ENSOGAG00000031345) #26	NT5C1A (ENSOGAG00000003617) #27	HEYL (ENSOGAG00000030877) #28	PABPC4 (ENSOGAG00000004067) #29	ENSOGAG00000029048 #24	MACF1 (ENSOGAG00000000073) #31	AKIRIN1 (ENSOGAG00000007962) #33	RHBDL2 (ENSOGAG00000014547) #34	GJA9 (ENSOGAG00000014545) #35	MYCBP (ENSOGAG00000024435)	RRAGC (ENSOGAG00000014541) #37	POU3F1 (ENSOGAG00000029584)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Tree shrew	MODERN SPECIES	1168													PPT1 (ENSTBEG00000005886) #19	CAP1 (ENSTBEG00000005022) #20	MFSD2A (ENSTBEG00000003227) #21	MYCL (ENSTBEG00000002060) #22	TRIT1 (ENSTBEG00000001317) #23
Glires	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Rodentia	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Marmotini	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00960000186932	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919.l #32	ENSGT00730000111729	ENSGT00390000002919.k.b #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Marmotini_b	ANCESTRAL SPECIES		ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00960000186932	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919.l #32	ENSGT00730000111729	ENSGT00390000002919.k.a #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Squirrel	MODERN SPECIES	74	KCNQ4 (ENSSTOG00000001907) #8	NFYC (ENSSTOG00000001900) #9	RIMS3 (ENSSTOG00000001897) #10	EXO5 (ENSSTOG00000007049) #12	ZFP69 (ENSSTOG00000031462) #13	ZFP69B (ENSSTOG00000009229) #14	SMAP2 (ENSSTOG00000005913)	COL9A2 (ENSSTOG00000005862) #15	ZMPSTE24 (ENSSTOG00000020016) #16	TMCO2 (ENSSTOG00000004814) #17	ENSSTOG00000022071 #18	ENSSTOG00000033898 #18	PPT1 (ENSSTOG00000005065) #19	CAP1 (ENSSTOG00000022338) #20	MFSD2A (ENSSTOG00000005042) #21	MYCL (ENSSTOG00000005037) #22	ENSSTOG00000034207	TRIT1 (ENSSTOG00000006446) #23	ENSSTOG00000031537 #24	PPIE (ENSSTOG00000010445) #25	HPCAL4 (ENSSTOG00000033957) #26	NT5C1A (ENSSTOG00000010430) #27	HEYL (ENSSTOG00000010427) #28	PABPC4 (ENSSTOG00000010416) #29	ENSSTOG00000029371 #24	MACF1 (ENSSTOG00000028672) #31	NDUFS5 (ENSSTOG00000011059) #32	ENSSTOG00000030751	AKIRIN1 (ENSSTOG00000023219) #33	RHBDL2 (ENSSTOG00000027167) #34	GJA9 (ENSSTOG00000027990) #35
Arctic ground squirrel	MODERN SPECIES	120											TMCO2 (ENSUPAG00010016423) #17	RLF (ENSUPAG00010016437) #18	ENSUPAG00010016456 #19	CAP1 (ENSUPAG00010016461) #20	MFSD2A (ENSUPAG00010016486) #21	MYCL (ENSUPAG00010016508) #22	ENSUPAG00010016518	TRIT1 (ENSUPAG00010016523) #23	PPIE (ENSUPAG00010016536) #25	HPCAL4 (ENSUPAG00010016554) #26	NT5C1A (ENSUPAG00010016564) #27	HEYL (ENSUPAG00010016578) #28	ENSUPAG00010016593 #29	ENSUPAG00010016600 #29	MACF1 (ENSUPAG00010016632) #31	ENSUPAG00010016776	NDUFS5 (ENSUPAG00010016787) #32	ENSUPAG00010016799 #33	RHBDL2 (ENSUPAG00010016814) #34	GJA9 (ENSUPAG00010016834) #35	MYCBP (ENSUPAG00010016841)
Alpin marmot	MODERN SPECIES	15	CTPS1 (ENSMMMG00000002324)	KCNQ4 (ENSMMMG00000002357) #8	NFYC (ENSMMMG00000002381) #9	RIMS3 (ENSMMMG00000002414) #10	ZNF684 (ENSMMMG00000002456) #11	EXO5 (ENSMMMG00000002472) #12	ZFP69 (ENSMMMG00000002478) #13	ZFP69B (ENSMMMG00000002528) #14	SMAP2 (ENSMMMG00000002536)	ENSMMMG00000002633 #16	TMCO2 (ENSMMMG00000002664) #17	RLF (ENSMMMG00000002678) #18	PPT1 (ENSMMMG00000002699) #19	CAP1 (ENSMMMG00000002734) #20	MFSD2A (ENSMMMG00000002807) #21	MYCL (ENSMMMG00000002838) #22	ENSMMMG00000002850	TRIT1 (ENSMMMG00000002859) #23	PPIE (ENSMMMG00000002879) #25	HPCAL4 (ENSMMMG00000002894) #26	NT5C1A (ENSMMMG00000002912) #27	HEYL (ENSMMMG00000002927) #28	PABPC4 (ENSMMMG00000002940) #29	MACF1 (ENSMMMG00000003103) #31	ENSMMMG00000003276	ENSMMMG00000003287 #32	ENSMMMG00000003299 #33	ENSMMMG00000003320	RHBDL2 (ENSMMMG00000003332) #34	GJA9 (ENSMMMG00000003355) #35	ENSMMMG00000003363
Eurasian red squirrel	MODERN SPECIES		NFYC (ENSSVLG00005009237) #9	RIMS3 (ENSSVLG00005009202) #10	ENSSVLG00005009174	ENSSVLG00005009149	EXO5 (ENSSVLG00005009138) #12	ZFP69 (ENSSVLG00005009085) #13	ZFP69B (ENSSVLG00005009014) #14	SMAP2 (ENSSVLG00005008838)	COL9A2 (ENSSVLG00005008637) #15	ZMPSTE24 (ENSSVLG00005008594) #16	TMCO2 (ENSSVLG00005007276) #17	RLF (ENSSVLG00005007220) #18	PPT1 (ENSSVLG00005007110) #19	ENSSVLG00005007032 #20	MFSD2A (ENSSVLG00005006874) #21	MYCL (ENSSVLG00005006832) #22	TRIT1 (ENSSVLG00005006559) #23	ENSSVLG00005006472 #24	PPIE (ENSSVLG00005006402) #25	HPCAL4 (ENSSVLG00005006346) #26	NT5C1A (ENSSVLG00005006307) #27	HEYL (ENSSVLG00005006277) #28	PABPC4 (ENSSVLG00005006197) #29	ENSSVLG00005006142	ENSSVLG00005006096 #24	MACF1 (ENSSVLG00005004041) #31	NDUFS5 (ENSSVLG00005003321) #32	AKIRIN1 (ENSSVLG00005003301) #33	RHBDL2 (ENSSVLG00005003273) #34	GJA9 (ENSSVLG00005003263) #35	ENSSVLG00005003250 #36
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00390000017974.v
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00390000017974.u.b
Hystricomorpha_b	ANCESTRAL SPECIES	7											ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00390000017974.u.b	ENSGT00860000135887	ENSGT00950000183031.A.a.a #37
Long-tailed chinchilla	MODERN SPECIES	159											TMCO2 (ENSCLAG00000013078) #17	RLF (ENSCLAG00000009565) #18	PPT1 (ENSCLAG00000009987) #19	CAP1 (ENSCLAG00000009526) #20	MFSD2A (ENSCLAG00000011973) #21	MYCL (ENSCLAG00000010158) #22	TRIT1 (ENSCLAG00000009828) #23	PPIE (ENSCLAG00000010288) #25	HPCAL4 (ENSCLAG00000009571) #26	NT5C1A (ENSCLAG00000011943) #27	ENSCLAG00000018068	HEYL (ENSCLAG00000012566) #28	PABPC4 (ENSCLAG00000011899) #29	MACF1 (ENSCLAG00000011083) #31	NDUFS5 (ENSCLAG00000009162) #32	AKIRIN1 (ENSCLAG00000014736) #33	RHBDL2 (ENSCLAG00000012649) #34	ENSCLAG00000010129	ENSCLAG00000009189	RRAGC (ENSCLAG00000014225) #37	UTP11 (ENSCLAG00000012521)
Degu	MODERN SPECIES	171								ENSODEG00000007201	ENSODEG00000019277	TMCO2 (ENSODEG00000008442) #17	RLF (ENSODEG00000007661) #18	ENSODEG00000019420	PPT1 (ENSODEG00000006483) #19	ENSODEG00000006778 #20	MFSD2A (ENSODEG00000008097) #21	MYCL (ENSODEG00000007752) #22	TRIT1 (ENSODEG00000006117) #23	ENSODEG00000007914 #24	ENSODEG00000007670 #25	HPCAL4 (ENSODEG00000007714) #26	NT5C1A (ENSODEG00000008226) #27	HEYL (ENSODEG00000006313) #28	ENSODEG00000019223	ENSODEG00000006592 #29	ENSODEG00000006675	ENSODEG00000006963 #31	ENSODEG00000006381 #31	NDUFS5 (ENSODEG00000006145) #32	ENSODEG00000006600 #33	RHBDL2 (ENSODEG00000007151) #34	ENSODEG00000019387
Guinea pig	MODERN SPECIES	143							EXO5 (ENSCPOG00000039403) #12	ZFP69 (ENSCPOG00000039050) #13	SMAP2 (ENSCPOG00000011534)	ZMPSTE24 (ENSCPOG00000011521) #16	TMCO2 (ENSCPOG00000004615) #17	RLF (ENSCPOG00000013002) #18	PPT1 (ENSCPOG00000005754) #19	ENSCPOG00000005746 #20	MFSD2A (ENSCPOG00000012982) #21	MYCL (ENSCPOG00000036849) #22	TRIT1 (ENSCPOG00000012820) #23	OXCT2 (ENSCPOG00000024317)	ENSCPOG00000019366 #24	PPIE (ENSCPOG00000007365) #25	HPCAL4 (ENSCPOG00000038678) #26	NT5C1A (ENSCPOG00000039653) #27	HEYL (ENSCPOG00000038617) #28	PABPC4 (ENSCPOG00000009552) #29	ENSCPOG00000021540	MACF1 (ENSCPOG00000010588) #31	NDUFS5 (ENSCPOG00000033659) #32	AKIRIN1 (ENSCPOG00000031693) #33	RHBDL2 (ENSCPOG00000022360) #34	H2AZ1 (ENSCPOG00000003879)	MYCBP (ENSCPOG00000020447)
Naked mole-rat female	MODERN SPECIES	26	NFYC (ENSHGLG00000003915) #9	RIMS3 (ENSHGLG00000003243) #10	ZNF684 (ENSHGLG00000039044) #11	EXO5 (ENSHGLG00000016741) #12	SMAP2 (ENSHGLG00000044537)	COL9A2 (ENSHGLG00000014385) #15	ZMPSTE24 (ENSHGLG00000047091) #16	TMCO2 (ENSHGLG00000012956) #17	ENSHGLG00000017963	RLF (ENSHGLG00000012491) #18	ENSHGLG00000035541	PPT1 (ENSHGLG00000011635) #19	ENSHGLG00000011409 #20	ENSHGLG00000049961	MFSD2A (ENSHGLG00000010975) #21	MYCL (ENSHGLG00000035021) #22	ENSHGLG00000010308 #23	ENSHGLG00000033839 #24	PABPC4 (ENSHGLG00000011162) #29	NT5C1A (ENSHGLG00000040411) #27	HPCAL4 (ENSHGLG00000037547) #26	PPIE (ENSHGLG00000012598) #25	ENSHGLG00000013430 #24	MACF1 (ENSHGLG00000012916) #31	NDUFS5 (ENSHGLG00000040333) #32	ENSHGLG00000010032 #33	RHBDL2 (ENSHGLG00000035014) #34	MYCBP (ENSHGLG00000049839)	RRAGC (ENSHGLG00000016185) #37	POU3F1 (ENSHGLG00000034082)	UTP11L (ENSHGLG00000037948)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Muroidea	ANCESTRAL SPECIES	3	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000164770.a	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00980000198642	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442.h #34
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442.h #34	ENSGT00390000017974.t	ENSGT00860000135887	ENSGT00950000183031.A.a.a #37
Chinese hamster chok1gshd	MODERN SPECIES	111	Nfyc (ENSCGRG00001012554) #9	Rims3 (ENSCGRG00001020274) #10	Exo5 (ENSCGRG00001006191) #12	Zfp69 (ENSCGRG00001020565) #13	Smap2 (ENSCGRG00001019982)	Col9a2 (ENSCGRG00001015354) #15	Zmpste24 (ENSCGRG00001013492) #16	Tmco2 (ENSCGRG00001013255) #17	Rlf (ENSCGRG00001007124) #18	ENSCGRG00001001757	ENSCGRG00001019636	ENSCGRG00001019698	Ppt1 (ENSCGRG00001017317) #19	Cap1 (ENSCGRG00001014999) #20	Mfsd2a (ENSCGRG00001012559) #21	Mycl (ENSCGRG00001012143) #22	Trit1 (ENSCGRG00001001894) #23	Bmp8b (ENSCGRG00001024934)	Ppie (ENSCGRG00001018491) #25	Hpcal4 (ENSCGRG00001017506) #26	Nt5c1a (ENSCGRG00001015879) #27	Heyl (ENSCGRG00001014507) #28	Pabpc4 (ENSCGRG00001018166) #29	ENSCGRG00001024169 #24	Macf1 (ENSCGRG00001022689) #31	Ndufs5 (ENSCGRG00001010913) #32	Akirin1 (ENSCGRG00001019740) #33	Rhbdl2 (ENSCGRG00001019222) #34	ENSCGRG00001000948	ENSCGRG00001001548 #34	Mycbp (ENSCGRG00001014579)
Golden Hamster	MODERN SPECIES	783													Ppt1 (ENSMAUG00000005418) #19	Cap1 (ENSMAUG00000014946) #20	Mfsd2a (ENSMAUG00000008783) #21	Mycl (ENSMAUG00000019673) #22	Trit1 (ENSMAUG00000000399) #23	Ppie (ENSMAUG00000020323) #25	Hpcal4 (ENSMAUG00000019694) #26	Heyl (ENSMAUG00000021921) #28	ENSMAUG00000019763 #29	ENSMAUG00000016732 #24	Macf1 (ENSMAUG00000019511) #31	Ndufs5 (ENSMAUG00000017342) #32	Akirin1 (ENSMAUG00000021503) #33	Rhbdl2 (ENSMAUG00000015665) #34	Mycbp (ENSMAUG00000013797)	Rragc (ENSMAUG00000012656) #37	ENSMAUG00000005081	Pou3f1 (ENSMAUG00000014508)	Utp11 (ENSMAUG00000008360)
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00390000009130.a.b	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442.h #34	ENSGT00390000017974.s.b	ENSGT00950000183031.A.a.a #37
Prairie vole	MODERN SPECIES	1	Cited4 (ENSMOCG00000008568) #7	Kcnq4 (ENSMOCG00000010712) #8	Nfyc (ENSMOCG00000018240) #9	ENSMOCG00000010327	Rims3 (ENSMOCG00000002716) #10	Exo5 (ENSMOCG00000009071) #12	Zfp69 (ENSMOCG00000001233) #13	Smap2 (ENSMOCG00000003493)	Col9a2 (ENSMOCG00000016172) #15	Zmpste24 (ENSMOCG00000001622) #16	Tmco2 (ENSMOCG00000008800) #17	Rlf (ENSMOCG00000021851) #18	Ppt1 (ENSMOCG00000015437) #19	ENSMOCG00000005738 #20	Mfsd2a (ENSMOCG00000020481) #21	Mycl (ENSMOCG00000021799) #22	Trit1 (ENSMOCG00000008173) #23	Bmp8b (ENSMOCG00000022145)	ENSMOCG00000018443 #25	Hpcal4 (ENSMOCG00000017738) #26	Nt5c1a (ENSMOCG00000014202) #27	Heyl (ENSMOCG00000000498) #28	Pabpc4 (ENSMOCG00000006763) #29	ENSMOCG00000006289 #24	ENSMOCG00000001459	ENSMOCG00000013336 #31	ENSMOCG00000016501 #31	Ndufs5 (ENSMOCG00000012730) #32	Akirin1 (ENSMOCG00000003567) #33	Rhbdl2 (ENSMOCG00000002795) #34	Mycbp (ENSMOCG00000015574)
Northern American deer mouse	MODERN SPECIES	11	Kcnq4 (ENSPEMG00000010808) #8	Nfyc (ENSPEMG00000008178) #9	Rims3 (ENSPEMG00000029843) #10	Exo5 (ENSPEMG00000024028) #12	Zfp69 (ENSPEMG00000004280) #13	Smap2 (ENSPEMG00000022978)	Col9a2 (ENSPEMG00000018729) #15	Zmpste24 (ENSPEMG00000017887) #16	Tmco2 (ENSPEMG00000018032) #17	Rlf (ENSPEMG00000027824) #18	ENSPEMG00000009772	ENSPEMG00000030310	Ppt1 (ENSPEMG00000008449) #19	Cap1 (ENSPEMG00000021949) #20	Mfsd2a (ENSPEMG00000022479) #21	Mycl (ENSPEMG00000029362) #22	Trit1 (ENSPEMG00000022418) #23	ENSPEMG00000024171 #24	Ppie (ENSPEMG00000013681) #25	Hpcal4 (ENSPEMG00000031286) #26	Nt5c1a (ENSPEMG00000021341) #27	Heyl (ENSPEMG00000028938) #28	ENSPEMG00000023569 #29	ENSPEMG00000022339 #24	ENSPEMG00000026409	Macf1 (ENSPEMG00000012737) #31	ENSPEMG00000025195	Ndufs5 (ENSPEMG00000008080) #32	Akirin1 (ENSPEMG00000030900) #33	ENSPEMG00000031249	Mycbp (ENSPEMG00000024417)
Murinae	ANCESTRAL SPECIES	2	ENSGT00910000144179.b.b	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00520000061577	ENSGT00390000017974
Mus	ANCESTRAL SPECIES	3	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00390000000102.b	ENSGT00390000000102.a	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00520000061577.a	ENSGT00390000017974
Mus_A	ANCESTRAL SPECIES	3	ENSGT00860000135841	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.s #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00520000061577.a	ENSGT00390000017974
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026412	Cited4 (MGP_CAROLIEiJ_G0026413) #7	Kcnq4 (MGP_CAROLIEiJ_G0026414) #8	Nfyc (MGP_CAROLIEiJ_G0026415) #9	Rims3 (MGP_CAROLIEiJ_G0026416) #10	Exo5 (MGP_CAROLIEiJ_G0026417) #12	Zfp69 (MGP_CAROLIEiJ_G0026418) #13	Smap2 (MGP_CAROLIEiJ_G0026419)	Col9a2 (MGP_CAROLIEiJ_G0026420) #15	Zmpste24 (MGP_CAROLIEiJ_G0026421) #16	Tmco2 (MGP_CAROLIEiJ_G0026422) #17	Rlf (MGP_CAROLIEiJ_G0026423) #18	Ppt1 (MGP_CAROLIEiJ_G0026424) #19	Cap1 (MGP_CAROLIEiJ_G0026425) #20	Mfsd2a (MGP_CAROLIEiJ_G0026426) #21	Mycl (MGP_CAROLIEiJ_G0026427) #22	Trit1 (MGP_CAROLIEiJ_G0026428) #23	Bmp8b (MGP_CAROLIEiJ_G0026429)	MGP_CAROLIEiJ_G0026430	Ppie (MGP_CAROLIEiJ_G0026431) #25	Hpcal4 (MGP_CAROLIEiJ_G0026432) #26	Nt5c1a (MGP_CAROLIEiJ_G0026433) #27	Heyl (MGP_CAROLIEiJ_G0026434) #28	Pabpc4 (MGP_CAROLIEiJ_G0026435) #29	MGP_CAROLIEiJ_G0026436	Macf1 (MGP_CAROLIEiJ_G0026437) #31	Ndufs5 (MGP_CAROLIEiJ_G0026438) #32	Akirin1 (MGP_CAROLIEiJ_G0026439) #33	Rhbdl2 (MGP_CAROLIEiJ_G0026440) #34	MGP_CAROLIEiJ_G0026441	MGP_CAROLIEiJ_G0026442
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00390000000102.b.b.b	ENSGT00390000000102.b.b.a	ENSGT00390000000102.a	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.s #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00520000061577.a	ENSGT00390000017974
Mouse	MODERN SPECIES	13	Rims3 (ENSMUSG00000032890) #10	Exo5 (ENSMUSG00000028629) #12	Zfp69 (ENSMUSG00000064141) #13	Smap2 (ENSMUSG00000032870)	Col9a2 (ENSMUSG00000028626) #15	Zmpste24 (ENSMUSG00000043207) #16	Tmco2 (ENSMUSG00000078577) #17	Rlf (ENSMUSG00000049878) #18	Gm12888 (ENSMUSG00000073764)	Gm12886 (ENSMUSG00000078576)	Gm12887 (ENSMUSG00000078575)	9530002B09Rik (ENSMUSG00000023263)	Ppt1 (ENSMUSG00000028657) #19	Cap1 (ENSMUSG00000028656) #20	Mfsd2a (ENSMUSG00000028655) #21	Mycl (ENSMUSG00000028654) #22	Trit1 (ENSMUSG00000028653) #23	Bmp8b (ENSMUSG00000002384)	Oxct2b (ENSMUSG00000076438)	Ppie (ENSMUSG00000028651) #25	Hpcal4 (ENSMUSG00000046093) #26	Nt5c1a (ENSMUSG00000054958) #27	Heyl (ENSMUSG00000032744) #28	Pabpc4 (ENSMUSG00000011257) #29	Bmp8a (ENSMUSG00000032726)	Oxct2a (ENSMUSG00000076436)	Macf1 (ENSMUSG00000028649) #31	Ndufs5 (ENSMUSG00000028648) #32	Akirin1 (ENSMUSG00000023075) #33	Rhbdl2 (ENSMUSG00000043333) #34	Mycbp (ENSMUSG00000028647)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00390000000102.b.a	ENSGT00390000000102.b.b.a	ENSGT00390000000102.a	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000164770.b	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.s #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00520000061577.a	ENSGT00390000017974
spretus	MODERN SPECIES	13	Nfyc (MGP_SPRETEiJ_G0027392) #9	Rims3 (MGP_SPRETEiJ_G0027393) #10	Exo5 (MGP_SPRETEiJ_G0027394) #12	Zfp69 (MGP_SPRETEiJ_G0027395) #13	Smap2 (MGP_SPRETEiJ_G0027396)	Col9a2 (MGP_SPRETEiJ_G0027397) #15	Zmpste24 (MGP_SPRETEiJ_G0027398) #16	Tmco2 (MGP_SPRETEiJ_G0027399) #17	Rlf (MGP_SPRETEiJ_G0027400) #18	MGP_SPRETEiJ_G0027401	MGP_SPRETEiJ_G0027402	MGP_SPRETEiJ_G0027403	Ppt1 (MGP_SPRETEiJ_G0027404) #19	Cap1 (MGP_SPRETEiJ_G0027405) #20	Mfsd2a (MGP_SPRETEiJ_G0027406) #21	MGP_SPRETEiJ_G0027407 #22	Trit1 (MGP_SPRETEiJ_G0027408) #23	Bmp8b (MGP_SPRETEiJ_G0027409)	MGP_SPRETEiJ_G0027410	Ppie (MGP_SPRETEiJ_G0027411) #25	Hpcal4 (MGP_SPRETEiJ_G0027412) #26	Nt5c1a (MGP_SPRETEiJ_G0027413) #27	Heyl (MGP_SPRETEiJ_G0027414) #28	Pabpc4 (MGP_SPRETEiJ_G0027415) #29	MGP_SPRETEiJ_G0027416	Macf1 (MGP_SPRETEiJ_G0027417) #31	MGP_SPRETEiJ_G0027418 #32	Akirin1 (MGP_SPRETEiJ_G0027419) #33	Rhbdl2 (MGP_SPRETEiJ_G0027420) #34	MGP_SPRETEiJ_G0027421	Mycbp (MGP_SPRETEiJ_G0027422)
Steppe mouse	MODERN SPECIES	3362											ENSMSIG00000012831	Ppt1 (ENSMSIG00000012843) #19	Cap1 (ENSMSIG00000012888) #20	ENSMSIG00000012905	Mfsd2a (ENSMSIG00000012913) #21	Mycl (ENSMSIG00000012978) #22	Trit1 (ENSMSIG00000013008) #23	Bmp8b (ENSMSIG00000013040)	Ppie (ENSMSIG00000013106) #25	Hpcal4 (ENSMSIG00000013133) #26	Nt5c1a (ENSMSIG00000013149) #27	Heyl (ENSMSIG00000013161) #28	Pabpc4 (ENSMSIG00000013185) #29	ENSMSIG00000013542 #24	Macf1 (ENSMSIG00000013599) #31	ENSMSIG00000014771	ENSMSIG00000014777 #32	Akirin1 (ENSMSIG00000014798) #33	Rhbdl2 (ENSMSIG00000014815) #34	ENSMSIG00000014855	ENSMSIG00000014863
Shrew mouse	MODERN SPECIES	19	Cited4 (MGP_PahariEiJ_G0028742) #7	Kcnq4 (MGP_PahariEiJ_G0028743) #8	Nfyc (MGP_PahariEiJ_G0028744) #9	Rims3 (MGP_PahariEiJ_G0028745) #10	Exo5 (MGP_PahariEiJ_G0028746) #12	MGP_PahariEiJ_G0028747 #13	Smap2 (MGP_PahariEiJ_G0028748)	Col9a2 (MGP_PahariEiJ_G0028749) #15	Zmpste24 (MGP_PahariEiJ_G0028750) #16	Tmco2 (MGP_PahariEiJ_G0028751) #17	Rlf (MGP_PahariEiJ_G0028752) #18	MGP_PahariEiJ_G0028753	Ppt1 (MGP_PahariEiJ_G0028754) #19	Cap1 (MGP_PahariEiJ_G0028755) #20	Mfsd2a (MGP_PahariEiJ_G0028756) #21	Mycl (MGP_PahariEiJ_G0028757) #22	Trit1 (MGP_PahariEiJ_G0028758) #23	MGP_PahariEiJ_G0028759	MGP_PahariEiJ_G0028760	Ppie (MGP_PahariEiJ_G0028761) #25	Hpcal4 (MGP_PahariEiJ_G0028762) #26	Nt5c1a (MGP_PahariEiJ_G0028763) #27	Heyl (MGP_PahariEiJ_G0028764) #28	Pabpc4 (MGP_PahariEiJ_G0028765) #29	Bmp8a (MGP_PahariEiJ_G0028766)	Macf1 (MGP_PahariEiJ_G0028767) #31	MGP_PahariEiJ_G0028768	Ndufs5 (MGP_PahariEiJ_G0028769) #32	Akirin1 (MGP_PahariEiJ_G0028770) #33	Rhbdl2 (MGP_PahariEiJ_G0028771) #34	MGP_PahariEiJ_G0028772
Rat	MODERN SPECIES	15	Nfyc (ENSRNOG00000010735) #9	Rims3 (ENSRNOG00000011171) #10	Exo5 (ENSRNOG00000037432) #12	Zfp69 (ENSRNOG00000028662) #13	Smap2 (ENSRNOG00000011421)	LOC680700 (ENSRNOG00000011484)	Col9a2 (ENSRNOG00000011502) #15	Zmpste24 (ENSRNOG00000012054) #16	Tmco2 (ENSRNOG00000012340) #17	Rlf (ENSRNOG00000027921) #18	AC124205.2 (ENSRNOG00000059975)	Twf1-ps1 (ENSRNOG00000012595)	Ppt1 (ENSRNOG00000012616) #19	Cap1 (ENSRNOG00000013492) #20	Mfsd2a (ENSRNOG00000014008) #21	Mycl (ENSRNOG00000014259) #22	Trit1 (ENSRNOG00000014274) #23	Bmp8b (ENSRNOG00000033209)	Ppie (ENSRNOG00000014762) #25	Hpcal4 (ENSRNOG00000050983) #26	Nt5c1a (ENSRNOG00000068555) #27	Heyl (ENSRNOG00000015318) #28	Pabpc4 (ENSRNOG00000015642) #29	Oxct2a (ENSRNOG00000070053)	Bmp8a (ENSRNOG00000030155)	Macf1 (ENSRNOG00000016047) #31	Ndufs5 (ENSRNOG00000026646) #32	Akirin1 (ENSRNOG00000026610) #33	Rhbdl2 (ENSRNOG00000026592) #34	ENSRNOG00000069690	Mycbp (ENSRNOG00000065724)
Upper Galilee mountains blind mole rat	MODERN SPECIES	879									Zmpste24 (ENSNGAG00000000244) #16	ENSNGAG00000020587 #18	ENSNGAG00000017552 #18	ENSNGAG00000017004 #19	ENSNGAG00000015371 #20	Mfsd2a (ENSNGAG00000003501) #21	ENSNGAG00000017860	Mycl (ENSNGAG00000017487) #22
Lesser Egyptian jerboa	MODERN SPECIES	117						ENSJJAG00000022543	Smap2 (ENSJJAG00000024140)	Col9a2 (ENSJJAG00000000950) #15	Zmpste24 (ENSJJAG00000023367) #16	Tmco2 (ENSJJAG00000006506) #17	Rlf (ENSJJAG00000013083) #18	ENSJJAG00000021094	Ppt1 (ENSJJAG00000016991) #19	Cap1 (ENSJJAG00000021395) #20	Mfsd2a (ENSJJAG00000015941) #21	Mycl (ENSJJAG00000011159) #22	ENSJJAG00000000300 #23	ENSJJAG00000023596	Tinagl1 (ENSJJAG00000019903)	Hcrtr1 (ENSJJAG00000024301)	Pef1 (ENSJJAG00000018921)	ENSJJAG00000019371	Adgrb2 (ENSJJAG00000017327)	ENSJJAG00000023812	ENSJJAG00000022891	Khdrbs1 (ENSJJAG00000016809)	Tmem39b (ENSJJAG00000010538)	Kpna6 (ENSJJAG00000015362)	Txlna (ENSJJAG00000007353)	Ccdc28b (ENSJJAG00000017928)	ENSJJAG00000013086
Kangaroo rat	MODERN SPECIES	352	Ctps (ENSDORG00000007319)	Cited4 (ENSDORG00000024161) #7	Kcnq4 (ENSDORG00000009865) #8	Nfyc (ENSDORG00000009863) #9	Rims3 (ENSDORG00000014652) #10	Exo5 (ENSDORG00000003571) #12	Zfp69 (ENSDORG00000024989) #13	Smap2 (ENSDORG00000016161)	Col9a2 (ENSDORG00000014027) #15	Zmpste24 (ENSDORG00000014026) #16	Tmco2 (ENSDORG00000024253) #17	Rlf (ENSDORG00000010416) #18	Ppt1 (ENSDORG00000027642) #19	ENSDORG00000003053 #20	Mfsd2a (ENSDORG00000012839) #21	Mycl (ENSDORG00000026501) #22	Trit1 (ENSDORG00000012449) #23	ENSDORG00000025089	Ppie (ENSDORG00000005175) #25	Hpcal4 (ENSDORG00000005161) #26	Nt5c1a (ENSDORG00000028589) #27	Heyl (ENSDORG00000024912) #28	Pabpc4 (ENSDORG00000011581) #29	ENSDORG00000016166 #24	ENSDORG00000023553	ENSDORG00000024495 #31	Ndufs5 (ENSDORG00000014651) #32	Akirin1 (ENSDORG00000025387) #33	Rhbdl2 (ENSDORG00000010234) #34	ENSDORG00000028436	Mycbp (ENSDORG00000010232)
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000154788 #29	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28
Rabbit	MODERN SPECIES	4	CITED4 (ENSOCUG00000015927) #7	KCNQ4 (ENSOCUG00000015852) #8	NFYC (ENSOCUG00000025540) #9	RIMS3 (ENSOCUG00000014068) #10	ENSOCUG00000030737 #11	EXO5 (ENSOCUG00000016005) #12	ZFP69 (ENSOCUG00000016000) #13	SMAP2 (ENSOCUG00000015858)	COL9A2 (ENSOCUG00000015838) #15	ZMPSTE24 (ENSOCUG00000015825) #16	TMCO2 (ENSOCUG00000017275) #17	RLF (ENSOCUG00000017263) #18	PPT1 (ENSOCUG00000012796) #19	ENSOCUG00000012790 #20	MFSD2A (ENSOCUG00000001028) #21	MYCL (ENSOCUG00000025113) #22	TRIT1 (ENSOCUG00000002054) #23	ENSOCUG00000007677 #24	ENSOCUG00000031949	PPIE (ENSOCUG00000007665) #25	HPCAL4 (ENSOCUG00000022645) #26	NT5C1A (ENSOCUG00000004298) #27	HEYL (ENSOCUG00000000560) #28	PABPC4 (ENSOCUG00000000562) #29	ENSOCUG00000023797 #24	ENSOCUG00000032823	MACF1 (ENSOCUG00000000677) #31	ENSOCUG00000022318	NDUFS5 (ENSOCUG00000024417) #32	ENSOCUG00000005500 #33	RHBDL2 (ENSOCUG00000016197) #34
Pika	MODERN SPECIES	701																ENSOPRG00000003229 #22	ENSOPRG00000003205 #23	ENSOPRG00000003172
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00940000164770	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158613 #22
Hedgehog	MODERN SPECIES	2150																MYCL (ENSEEUG00000004078) #22	UTP20 (ENSEEUG00000003774)
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37	ENSGT00940000163458
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.pb #29	ENSGT00730000111729	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37
Ferret	MODERN SPECIES	167	CTPS1 (ENSMPUG00000014098)	ENSMPUG00000014104	KCNQ4 (ENSMPUG00000014105) #8	NFYC (ENSMPUG00000014111) #9	RIMS3 (ENSMPUG00000014121) #10	EXO5 (ENSMPUG00000014127) #12	ZFP69 (ENSMPUG00000014134) #13	ZFP69B (ENSMPUG00000014137) #14	SMAP2 (ENSMPUG00000014143)	COL9A2 (ENSMPUG00000014148) #15	ZMPSTE24 (ENSMPUG00000014262) #16	RLF (ENSMPUG00000014267) #18	PPT1 (ENSMPUG00000014273) #19	CAP1 (ENSMPUG00000014278) #20	MFSD2A (ENSMPUG00000014281) #21	MYCL (ENSMPUG00000014286) #22	TRIT1 (ENSMPUG00000014291) #23	ENSMPUG00000014337 #24	PPIE (ENSMPUG00000014345) #25	HPCAL4 (ENSMPUG00000014377) #26	NT5C1A (ENSMPUG00000014409) #27	HEYL (ENSMPUG00000014412) #28	ENSMPUG00000014414 #29	ENSMPUG00000014419 #24	MACF1 (ENSMPUG00000014430) #31	AKIRIN1 (ENSMPUG00000014440) #33	ENSMPUG00000014452	RHBDL2 (ENSMPUG00000014455) #34	GJA9 (ENSMPUG00000018591) #35	RRAGC (ENSMPUG00000014485) #37	ENSMPUG00000014487
American mink	MODERN SPECIES	99	KCNQ4 (ENSNVIG00000015699) #8	NFYC (ENSNVIG00000015556) #9	RIMS3 (ENSNVIG00000015532) #10	ZNF684 (ENSNVIG00000015518) #11	EXO5 (ENSNVIG00000015513) #12	ZFP69 (ENSNVIG00000015479) #13	ZFP69B (ENSNVIG00000015457) #14	SMAP2 (ENSNVIG00000015398)	COL9A2 (ENSNVIG00000015312) #15	ZMPSTE24 (ENSNVIG00000015278) #16	TMCO2 (ENSNVIG00000015270) #17	RLF (ENSNVIG00000015255) #18	PPT1 (ENSNVIG00000015174) #19	CAP1 (ENSNVIG00000015095) #20	MFSD2A (ENSNVIG00000014997) #21	MYCL (ENSNVIG00000014970) #22	TRIT1 (ENSNVIG00000014833) #23	ENSNVIG00000014799 #24	PABPC4 (ENSNVIG00000014643) #29	HEYL (ENSNVIG00000014595) #28	NT5C1A (ENSNVIG00000014581) #27	HPCAL4 (ENSNVIG00000014564) #26	PPIE (ENSNVIG00000014547) #25	ENSNVIG00000014528 #24	ENSNVIG00000014522	MACF1 (ENSNVIG00000013435) #31	ENSNVIG00000013364 #32	AKIRIN1 (ENSNVIG00000013340) #33	B3KUN4 (ENSNVIG00000013297) #34	GJA9 (ENSNVIG00000013293) #35	MYCBP (ENSNVIG00000013279)
Ursidae	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000017955.c.n #20	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790.j #19	ENSGT00390000017955.c.m #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919.z.a #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00940000165268 #36	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37
Ursus	ANCESTRAL SPECIES	231					ENSGT00940000163099 #11	ENSGT00390000017955.c.n #20	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790.j #19	ENSGT00390000017955.c.m #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25
American black bear	MODERN SPECIES	5266															MFSD2A (ENSUAMG00000000581) #21	MYCL (ENSUAMG00000000568) #22	ENSUAMG00000000522 #23	ENSUAMG00000000509 #23
Polar bear	MODERN SPECIES	473					ZNF684 (ENSUMAG00000017154) #11	ENSUMAG00000017169 #20	ZFP69 (ENSUMAG00000017175) #13	ZFP69B (ENSUMAG00000017193) #14	SMAP2 (ENSUMAG00000017203)	ZMPSTE24 (ENSUMAG00000017218) #16	TMCO2 (ENSUMAG00000017224) #17	RLF (ENSUMAG00000017230) #18	PPT1 (ENSUMAG00000017252) #19	ENSUMAG00000017266 #20	MFSD2A (ENSUMAG00000017284) #21	MYCL (ENSUMAG00000017291) #22	TRIT1 (ENSUMAG00000017299) #23	ENSUMAG00000017307 #24	PPIE (ENSUMAG00000017319) #25
Giant Panda	MODERN SPECIES	11	KCNQ4 (ENSAMEG00000011888) #8	NFYC (ENSAMEG00000011899) #9	RIMS3 (ENSAMEG00000011913) #10	ENSAMEG00000026970	ZNF684 (ENSAMEG00000028572) #11	ENSAMEG00000024599 #20	ZFP69 (ENSAMEG00000031429) #13	SMAP2 (ENSAMEG00000004571)	COL9A2 (ENSAMEG00000004524) #15	ZMPSTE24 (ENSAMEG00000004501) #16	TMCO2 (ENSAMEG00000004499) #17	RLF (ENSAMEG00000004478) #18	PPT1 (ENSAMEG00000004444) #19	ENSAMEG00000004417 #20	MFSD2A (ENSAMEG00000004371) #21	MYCL (ENSAMEG00000023600) #22	TRIT1 (ENSAMEG00000004342) #23	ENSAMEG00000011490 #24	PPIE (ENSAMEG00000007346) #25	HPCAL4 (ENSAMEG00000025990) #26	NT5C1A (ENSAMEG00000011616) #27	HEYL (ENSAMEG00000011612) #28	PABPC4 (ENSAMEG00000011535) #29	ENSAMEG00000026716 #24	ENSAMEG00000027526	MACF1 (ENSAMEG00000010358) #31	ENSAMEG00000010344 #32	AKIRIN1 (ENSAMEG00000028784) #33	RHBDL2 (ENSAMEG00000010323) #34	ENSAMEG00000010319 #35	ENSAMEG00000010315 #36
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000159332 #10	ENSGT00390000003156.a.b.q.b	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT01030000236049.a	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.o.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00940000178962	ENSGT00390000015214 #23	ENSGT00940000178388	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000003156.a.b.q.b	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT01030000236049.a	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.o.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37	ENSGT00940000163458
Dingo	MODERN SPECIES	344	NFYC (ENSCAFG00020003362) #9	RIMS3 (ENSCAFG00020003384) #10	ENSCAFG00020003387	ZNF684 (ENSCAFG00020003394) #11	EXO5 (ENSCAFG00020003399) #12	ENSCAFG00020003403	ZFP69B (ENSCAFG00020003410) #14	SMAP2 (ENSCAFG00020003411)	COL9A2 (ENSCAFG00020003418) #15	ZMPSTE24 (ENSCAFG00020003431) #16	TMCO2 (ENSCAFG00020003438) #17	RLF (ENSCAFG00020003446) #18	PPT1 (ENSCAFG00020003461) #19	ENSCAFG00020003484 #20	MFSD2A (ENSCAFG00020003855) #21	MYCL (ENSCAFG00020003867) #22	TRIT1 (ENSCAFG00020003875) #23	ENSCAFG00020004108 #24	PPIE (ENSCAFG00020004132) #25	HPCAL4 (ENSCAFG00020004133) #26	NT5C1A (ENSCAFG00020004154) #27	HEYL (ENSCAFG00020004158) #28	PABPC4 (ENSCAFG00020004161) #29	ENSCAFG00020004186 #24	ENSCAFG00020004281 #31	ENSCAFG00020005975 #31	NDUFS5 (ENSCAFG00020006129) #32	ENSCAFG00020006133 #33	RHBDL2 (ENSCAFG00020006136) #34	GJA9 (ENSCAFG00020006141) #35	ENSCAFG00020006145
Dog	MODERN SPECIES	6	KCNQ4 (ENSCAFG00845009123) #8	NFYC (ENSCAFG00845009374) #9	RIMS3 (ENSCAFG00845009552) #10	ENSCAFG00845009641	ZNF684 (ENSCAFG00845009658) #11	EXO5 (ENSCAFG00845009682) #12	ENSCAFG00845009699	ZFP69B (ENSCAFG00845009753) #14	SMAP2 (ENSCAFG00845009938)	COL9A2 (ENSCAFG00845010158) #15	ZMPSTE24 (ENSCAFG00845010326) #16	TMCO2 (ENSCAFG00845010398) #17	RLF (ENSCAFG00845010433) #18	PPT1 (ENSCAFG00845010701) #19	CAP1 (ENSCAFG00845010977) #20	MYCL (ENSCAFG00845011043) #22	MFSD2A (ENSCAFG00845011113) #21	TRIT1 (ENSCAFG00845011261) #23	ENSCAFG00845011459 #24	PPIE (ENSCAFG00845011567) #25	HPCAL4 (ENSCAFG00845011679) #26	NT5C1A (ENSCAFG00845011699) #27	HEYL (ENSCAFG00845011723) #28	PABPC4 (ENSCAFG00845011755) #29	ENSCAFG00845011882 #24	MACF1 (ENSCAFG00845017426) #31	NDUFS5 (ENSCAFG00845030086) #32	ENSCAFG00845030105 #33	RHBDL2 (ENSCAFG00845030132) #34	GJA9 (ENSCAFG00845030152) #35	MYCBP (ENSCAFG00845030166)
Red fox	MODERN SPECIES	183	RIMS3 (ENSVVUG00000005066) #10	ENSVVUG00000005079	ZNF684 (ENSVVUG00000005082) #11	EXO5 (ENSVVUG00000005087) #12	ENSVVUG00000005091	ZFP69 (ENSVVUG00000005095) #13	ZFP69B (ENSVVUG00000005101) #14	SMAP2 (ENSVVUG00000005115)	ENSVVUG00000005124 #15	ZMPSTE24 (ENSVVUG00000005159) #16	TMCO2 (ENSVVUG00000005166) #17	RLF (ENSVVUG00000005167) #18	PPT1 (ENSVVUG00000005177) #19	CAP1 (ENSVVUG00000005182) #20	MFSD2A (ENSVVUG00000005183) #21	MYCL (ENSVVUG00000005189) #22	ENSVVUG00000005199	ENSVVUG00000005200 #23	ENSVVUG00000005204	ENSVVUG00000005208 #23	ENSVVUG00000005210 #24	PABPC4 (ENSVVUG00000005215) #29	HEYL (ENSVVUG00000005234) #28	NT5C1A (ENSVVUG00000005242) #27	HPCAL4 (ENSVVUG00000005260) #26	ENSVVUG00000005268 #25
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.k #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.k #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00940000165268 #36	ENSGT00950000183031.A.a.a #37
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.k #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23
lion	MODERN SPECIES	80		NFYC (ENSPLOG00000018570) #9	RIMS3 (ENSPLOG00000018675) #10	ZNF684 (ENSPLOG00000018742) #11	EXO5 (ENSPLOG00000018778) #12	ZFP69 (ENSPLOG00000018790) #13	ZFP69B (ENSPLOG00000018823) #14	SMAP2 (ENSPLOG00000018892)	COL9A2 (ENSPLOG00000018979) #15	ZMPSTE24 (ENSPLOG00000019179) #16	TMCO2 (ENSPLOG00000019262) #17	RLF (ENSPLOG00000019302) #18	PPT1 (ENSPLOG00000019360) #19	ENSPLOG00000019462 #20	MFSD2A (ENSPLOG00000019565) #21	MYCL (ENSPLOG00000019715) #22	TRIT1 (ENSPLOG00000019799) #23
leopard	MODERN SPECIES	122	KCNQ4 (ENSPPRG00000017625) #8	NFYC (ENSPPRG00000024994) #9	RIMS3 (ENSPPRG00000024970) #10	ZNF684 (ENSPPRG00000024912) #11	EXO5 (ENSPPRG00000020696) #12	ZFP69 (ENSPPRG00000024684) #13	ZFP69B (ENSPPRG00000024607) #14	SMAP2 (ENSPPRG00000024039)	COL9A2 (ENSPPRG00000023328) #15	ZMPSTE24 (ENSPPRG00000022765) #16	TMCO2 (ENSPPRG00000022670) #17	RLF (ENSPPRG00000000135) #18	PPT1 (ENSPPRG00000001088) #19	CAP1 (ENSPPRG00000001756) #20	MFSD2A (ENSPPRG00000005280) #21	MYCL (ENSPPRG00000006062) #22	TRIT1 (ENSPPRG00000009680) #23
Tiger	MODERN SPECIES	100	KCNQ4 (ENSPTIG00000017705) #8	NFYC (ENSPTIG00000018001) #9	RIMS3 (ENSPTIG00000018430) #10	ZNF684 (ENSPTIG00000018626) #11	EXO5 (ENSPTIG00000006394) #12	ZFP69 (ENSPTIG00000019037) #13	ZFP69B (ENSPTIG00000019160) #14	SMAP2 (ENSPTIG00000019202)	COL9A2 (ENSPTIG00000019688) #15	ZMPSTE24 (ENSPTIG00000019825) #16	TMCO2 (ENSPTIG00000019965) #17	RLF (ENSPTIG00000019984) #18	PPT1 (ENSPTIG00000020102) #19	ENSPTIG00000020510 #20	MFSD2A (ENSPTIG00000020789) #21	MYCL (ENSPTIG00000021086) #22	TRIT1 (ENSPTIG00000021134) #23	PPIE (ENSPTIG00000003196) #25	HPCAL4 (ENSPTIG00000005006) #26	NT5C1A (ENSPTIG00000005350) #27	HEYL (ENSPTIG00000005479) #28	PABPC4 (ENSPTIG00000005829) #29
Cat	MODERN SPECIES	239	KCNQ4 (ENSFCAG00000002917) #8	NFYC (ENSFCAG00000002915) #9	RIMS3 (ENSFCAG00000002913) #10	ZNF684 (ENSFCAG00000028520) #11	EXO5 (ENSFCAG00000005729) #12	ZFP69 (ENSFCAG00000033023) #13	ZFP69B (ENSFCAG00000034968) #14	SMAP2 (ENSFCAG00000005726)	COL9A2 (ENSFCAG00000046792) #15	ZMPSTE24 (ENSFCAG00000005722) #16	TMCO2 (ENSFCAG00000013919) #17	RLF (ENSFCAG00000031737) #18	PPT1 (ENSFCAG00000023550) #19	CAP1 (ENSFCAG00000012460) #20	MFSD2A (ENSFCAG00000009858) #21	MYCL (ENSFCAG00000022640) #22	TRIT1 (ENSFCAG00000006029) #23	ENSFCAG00000045792 #24	ENSFCAG00000044436	ENSFCAG00000006027 #25	HPCAL4 (ENSFCAG00000043266) #26	NT5C1A (ENSFCAG00000006025) #27	PABPC4 (ENSFCAG00000015254) #29	ENSFCAG00000035501 #25	ENSFCAG00000050715	ENSFCAG00000043069 #24	MACF1 (ENSFCAG00000045633) #31	NDUFS5 (ENSFCAG00000028222) #32	AKIRIN1 (ENSFCAG00000030569) #33	RHBDL2 (ENSFCAG00000003211) #34	GJA9 (ENSFCAG00000003210) #35
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Equus	ANCESTRAL SPECIES	2	ENSGT00530000063624.C #7	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000003897.s.a	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000158790.f #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790.e.a #25	ENSGT00390000009130.a.b	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Horse	MODERN SPECIES	11	ENSECAG00000048355	ZNF684 (ENSECAG00000022010) #11	ENSECAG00000047147 #11	EXO5 (ENSECAG00000004928) #12	ZFP69 (ENSECAG00000022039) #13	ZFP69B (ENSECAG00000023120) #14	SMAP2 (ENSECAG00000024413)	COL9A2 (ENSECAG00000010971)	ZMPSTE24 (ENSECAG00000007773) #16	TMCO2 (ENSECAG00000037648) #17	RLF (ENSECAG00000012776) #18	PPT1 (ENSECAG00000017370) #19	CAP1 (ENSECAG00000024658) #20	ENSECAG00000052677	MFSD2A (ENSECAG00000013728) #21	MYCL (ENSECAG00000008765) #22	ENSECAG00000038999	TRIT1 (ENSECAG00000010597) #23	ENSECAG00000008528 #24	ENSECAG00000031692 #25	HPCAL4 (ENSECAG00000019203) #26	NT5C1A (ENSECAG00000019710) #27	HEYL (ENSECAG00000007220) #28	PABPC4 (ENSECAG00000009396) #29	ENSECAG00000038706 #25	OXCT2 (ENSECAG00000010065)	MACF1 (ENSECAG00000013366) #31	NDUFS5 (ENSECAG00000011681) #32	AKIRIN1 (ENSECAG00000012589) #33	RHBDL2 (ENSECAG00000015194) #34	GJA9 (ENSECAG00000004967) #35
Donkey	MODERN SPECIES	25	NFYC (ENSEASG00005001046) #9	RIMS3 (ENSEASG00005001037) #10	EXO5 (ENSEASG00005037469) #12	ZNF684 (ENSEASG00005027767) #11	ZFP69 (ENSEASG00005035436) #13	ZFP69B (ENSEASG00005001020) #14	SMAP2 (ENSEASG00005001012)	ENSEASG00005000994	ZMPSTE24 (ENSEASG00005000980) #16	TMCO2 (ENSEASG00005000974) #17	RLF (ENSEASG00005000935) #18	ENSEASG00005000926 #19	ENSEASG00005026058 #19	CAP1 (ENSEASG00005000919) #20	MFSD2A (ENSEASG00005000914) #21	MYCL (ENSEASG00005000909) #22	ENSEASG00005000897	TRIT1 (ENSEASG00005000884) #23	ENSEASG00005031332 #24	ENSEASG00005014118 #25	HPCAL4 (ENSEASG00005030469) #26	NT5C1A (ENSEASG00005014123) #27	ENSEASG00005014122 #28	ENSEASG00005014119 #29	ENSEASG00005014125 #25	ENSEASG00005035819	ENSEASG00005038346 #24	MACF1 (ENSEASG00005013583) #31	NDUFS5 (ENSEASG00005013292) #32	AKIRIN1 (ENSEASG00005013289) #33	RHBDL2 (ENSEASG00005013286) #34
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37	ENSGT00940000163458
Megabat	MODERN SPECIES	723															MFSD2A (ENSPVAG00000003348) #21	MYCL (ENSPVAG00000003347) #22	TRIT1 (ENSPVAG00000003344) #23
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37	ENSGT00940000163458
Greater horseshoe bat	MODERN SPECIES	27	NFYC (ENSRFEG00010005156) #9	RIMS3 (ENSRFEG00010005135) #10	ZNF684 (ENSRFEG00010004917) #11	EXO5 (ENSRFEG00010004913) #12	ZFP69 (ENSRFEG00010004907) #13	ZFP69B (ENSRFEG00010004898) #14	SMAP2 (ENSRFEG00010004874)	COL9A2 (ENSRFEG00010004846) #15	ZMPSTE24 (ENSRFEG00010004824) #16	TMCO2 (ENSRFEG00010004812) #17	ENSRFEG00010004804	RLF (ENSRFEG00010004791) #18	PPT1 (ENSRFEG00010004763) #19	ENSRFEG00010004740 #20	MFSD2A (ENSRFEG00010004694) #21	MYCL (ENSRFEG00010004654) #22	TRIT1 (ENSRFEG00010004607) #23	ENSRFEG00010004561 #24	ENSRFEG00010004530 #25	HPCAL4 (ENSRFEG00010004498) #26	NT5C1A (ENSRFEG00010004485) #27	HEYL (ENSRFEG00010004468) #28	PABPC4 (ENSRFEG00010004353) #29	ENSRFEG00010004310 #25	ENSRFEG00010004273 #24	MACF1 (ENSRFEG00010003811) #31	NDUFS5 (ENSRFEG00010004262) #32	ENSRFEG00010003392 #33	RHBDL2 (ENSRFEG00010003362) #34	ENSRFEG00010003323 #36	RRAGC (ENSRFEG00010003302) #37
Microbat	MODERN SPECIES	1159	TSPAN1 (ENSMLUG00000003744)	POMGNT1 (ENSMLUG00000003749)	RAD54L (ENSMLUG00000003763)	LRRC41 (ENSMLUG00000003773)	ENSMLUG00000003779	ENSMLUG00000025295	SMAP2 (ENSMLUG00000006849)	COL9A2 (ENSMLUG00000001585) #15	ZMPSTE24 (ENSMLUG00000026592) #16	TMCO2 (ENSMLUG00000001582) #17	RLF (ENSMLUG00000001580) #18	PPT1 (ENSMLUG00000011644) #19	CAP1 (ENSMLUG00000011626) #20	ENSMLUG00000009660	MFSD2A (ENSMLUG00000000339) #21	MYCL (ENSMLUG00000000337) #22	TRIT1 (ENSMLUG00000000334) #23	ENSMLUG00000009236
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Suina	ANCESTRAL SPECIES	27	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Chacoan peccary	MODERN SPECIES	54	NFYC (ENSCWAG00000012236) #9	RIMS3 (ENSCWAG00000012432) #10	ENSCWAG00000012478 #11	ZNF684 (ENSCWAG00000012539) #11	EXO5 (ENSCWAG00000012561) #12	ZFP69 (ENSCWAG00000012581) #13	ZFP69B (ENSCWAG00000012643) #14	SMAP2 (ENSCWAG00000012703)	COL9A2 (ENSCWAG00000012744) #15	ZMPSTE24 (ENSCWAG00000013036) #16	TMCO2 (ENSCWAG00000013076) #17	RLF (ENSCWAG00000013118) #18	PPT1 (ENSCWAG00000013154) #19	CAP1 (ENSCWAG00000013235) #20	MFSD2A (ENSCWAG00000013374) #21	MYCL (ENSCWAG00000013677) #22	TRIT1 (ENSCWAG00000013773) #23
Pig	MODERN SPECIES	14	PTPN2 (ENSSSCG00000021738)	SEH1L (ENSSSCG00000003673)	CEP192 (ENSSSCG00000059665)	LDLRAD4 (ENSSSCG00000027417)	FAM210A (ENSSSCG00000058331)	RNMT (ENSSSCG00000025855)	MC5R (ENSSSCG00000028411)	MC2R (ENSSSCG00000039227)	ENSSSCG00000023322	ZMPSTE24 (ENSSSCG00000027902) #16	TMCO2 (ENSSSCG00000036395) #17	RLF (ENSSSCG00000003670) #18	PPT1 (ENSSSCG00000036673) #19	CAP1 (ENSSSCG00000003672) #20	MFSD2A (ENSSSCG00000003669) #21	ENSSSCG00000039761 #22	TRIT1 (ENSSSCG00000003667) #23	ENSSSCG00000037514 #24	ENSSSCG00000003664 #25	HPCAL4 (ENSSSCG00000023460) #26	NT5C1A (ENSSSCG00000003662) #27	HEYL (ENSSSCG00000038956) #28	PABPC4 (ENSSSCG00000003660) #29	ENSSSCG00000029705 #25	ENSSSCG00000003666	ENSSSCG00000032082 #24	ENSSSCG00000036451	ENSSSCG00000003655	ENSSSCG00000034367	MACF1 (ENSSSCG00000003654) #31	ENSSSCG00000050377
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Camelidae	ANCESTRAL SPECIES	3										ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00730000111729	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Arabian camel	MODERN SPECIES	4	CITED4 (ENSCDRG00005014841) #7	KCNQ4 (ENSCDRG00005014732) #8	NFYC (ENSCDRG00005014542) #9	RIMS3 (ENSCDRG00005014464) #10	ZNF684 (ENSCDRG00005014415) #11	ZFP69 (ENSCDRG00005014364) #13	ZFP69B (ENSCDRG00005014292) #14	SMAP2 (ENSCDRG00005014239)	ENSCDRG00005014109	ZMPSTE24 (ENSCDRG00005013984) #16	TMCO2 (ENSCDRG00005013941) #17	RLF (ENSCDRG00005013887) #18	PPT1 (ENSCDRG00005013620) #19	CAP1 (ENSCDRG00005013432) #20	MFSD2A (ENSCDRG00005013329) #21	MYCL (ENSCDRG00005013289) #22	TRIT1 (ENSCDRG00005012882) #23	ENSCDRG00005012813	ENSCDRG00005012658 #24	PPIE (ENSCDRG00005012507) #25	HPCAL4 (ENSCDRG00005012456) #26	NT5C1A (ENSCDRG00005012419) #27	HEYL (ENSCDRG00005012353) #28	PABPC4 (ENSCDRG00005012184) #29	ENSCDRG00005012115	ENSCDRG00005012058 #24	ENSCDRG00005012033	ENSCDRG00005012015	MACF1 (ENSCDRG00005011193) #31	NDUFS5 (ENSCDRG00005011048) #32	AKIRIN1 (ENSCDRG00005010869) #33
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Cetacea	ANCESTRAL SPECIES		ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.h.a #24	ENSGT00390000009130.a.b	ENSGT00940000155272.h.b #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.h.a #24	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Dolphin	MODERN SPECIES	235															MFSD2A (ENSTTRG00000005126) #21	MYCL (ENSTTRG00000005113) #22	TRIT1 (ENSTTRG00000005064) #23
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000154732.r	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000154732.r	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Beluga whale	MODERN SPECIES	74	RIMS3 (ENSDLEG00000021553) #10	ENSDLEG00000021551	ZNF684 (ENSDLEG00000021547) #11	EXO5 (ENSDLEG00000021545) #12	ZFP69 (ENSDLEG00000021544) #13	ZFP69B (ENSDLEG00000021542) #14	ENSDLEG00000021541	SMAP2 (ENSDLEG00000021539)	COL9A2 (ENSDLEG00000021538) #15	ZMPSTE24 (ENSDLEG00000021536) #16	TMCO2 (ENSDLEG00000021535) #17	RLF (ENSDLEG00000021532) #18	PPT1 (ENSDLEG00000021528) #19	CAP1 (ENSDLEG00000021526) #20	MFSD2A (ENSDLEG00000021522) #21	MYCL (ENSDLEG00000021520) #22	ENSDLEG00000021516 #23	ENSDLEG00000021514 #23	ENSDLEG00000021508 #24	ENSDLEG00000021505 #25	HPCAL4 (ENSDLEG00000021500) #26	NT5C1A (ENSDLEG00000021498) #27	HEYL (ENSDLEG00000021494) #28	PABPC4 (ENSDLEG00000021388) #29	ENSDLEG00000021372 #25	ENSDLEG00000021370	ENSDLEG00000021368 #24	MACF1 (ENSDLEG00000010769) #31	NDUFS5 (ENSDLEG00000008851) #32	AKIRIN1 (ENSDLEG00000008811) #33	ENSDLEG00000008788
Narwhal	MODERN SPECIES	304	NFYC (ENSMMNG00015005483) #9	RIMS3 (ENSMMNG00015005511) #10	ENSMMNG00015005529	ZNF684 (ENSMMNG00015005545) #11	ZFP69 (ENSMMNG00015005572) #13	ZFP69B (ENSMMNG00015005594) #14	SMAP2 (ENSMMNG00015005643)	ENSMMNG00015005687	COL9A2 (ENSMMNG00015005714) #15	ZMPSTE24 (ENSMMNG00015005742) #16	TMCO2 (ENSMMNG00015005776) #17	RLF (ENSMMNG00015005790) #18	PPT1 (ENSMMNG00015005839) #19	CAP1 (ENSMMNG00015005895) #20	MFSD2A (ENSMMNG00015005948) #21	MYCL (ENSMMNG00015006076) #22	TRIT1 (ENSMMNG00015006142) #23	ENSMMNG00015006223	HPCAL4 (ENSMMNG00015006263) #26	NT5C1A (ENSMMNG00015006285) #27	HEYL (ENSMMNG00015006307) #28	ENSMMNG00015006370 #29	MACF1 (ENSMMNG00015007113) #31	ENSMMNG00015008441	NDUFS5 (ENSMMNG00015008453) #32	AKIRIN1 (ENSMMNG00015008468) #33	RHBDL2 (ENSMMNG00015008493) #34	GJA9 (ENSMMNG00015008510) #35	MYCBP (ENSMMNG00015008524)	RRAGC (ENSMMNG00015008543) #37	POU3F1 (ENSMMNG00015008564)
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES		ENSPSNG00000000577	ENSPSNG00000000535 #11	ZNF684 (ENSPSNG00000000492) #11	EXO5 (ENSPSNG00000000484) #12	ZFP69 (ENSPSNG00000000470) #13	ZFP69B (ENSPSNG00000000443) #14	ENSPSNG00000000420	SMAP2 (ENSPSNG00000000368)	COL9A2 (ENSPSNG00000000303) #15	ZMPSTE24 (ENSPSNG00000000265) #16	TMCO2 (ENSPSNG00000000247) #17	RLF (ENSPSNG00000000213) #18	PPT1 (ENSPSNG00000000185) #19	CAP1 (ENSPSNG00000000118) #20	MFSD2A (ENSPSNG00000000074) #21	ENSPSNG00000000051 #22	TRIT1 (ENSPSNG00000000026) #23	ENSPSNG00000000013 #24	ENSPSNG00000000009 #25	HPCAL4 (ENSPSNG00000000004) #26	NT5C1A (ENSPSNG00000022210) #27	HEYL (ENSPSNG00000022201) #28	ENSPSNG00000022176 #29	ENSPSNG00000022154 #25	ENSPSNG00000022141	ENSPSNG00000022132 #24	NDUFS5 (ENSPSNG00000019668) #32	AKIRIN1 (ENSPSNG00000019597) #33	ENSPSNG00000019543	RHBDL2 (ENSPSNG00000019512) #34	GJA9 (ENSPSNG00000019493) #35
Vaquita	MODERN SPECIES	19	ENSPSNG00000008028	C11orf87 (ENSPSNG00000008061)	ENSPSNG00000008073	ENSPSNG00000008091	EXPH5 (ENSPSNG00000008136)	POGLUT3 (ENSPSNG00000008193)	C11orf65 (ENSPSNG00000008266)	ATM (ENSPSNG00000008366)	NPAT (ENSPSNG00000008455)	CUL5 (ENSPSNG00000008548)	RAB39A (ENSPSNG00000008734)	ENSPSNG00000008761	SLC35F2 (ENSPSNG00000008805)	ELMOD1 (ENSPSNG00000008894)	ALKBH8 (ENSPSNG00000008972)	ENSPSNG00000009069 #22	ENSPSNG00000009080	GUCY1A2 (ENSPSNG00000009108)	ENSPSNG00000009179	CWF19L2 (ENSPSNG00000009225)	AASDHPPT (ENSPSNG00000009261)	KBTBD3 (ENSPSNG00000009333)	MSANTD4 (ENSPSNG00000009351)	GRIA4 (ENSPSNG00000009480)	ENSPSNG00000009900	ENSPSNG00000009923	ENSPSNG00000010097	ENSPSNG00000010712	ENSPSNG00000010961	PDGFD (ENSPSNG00000011015)	DDI1 (ENSPSNG00000011079)
Sperm whale	MODERN SPECIES	14	ENSPCTG00005000702	RIMS3 (ENSPCTG00005000713) #10	ENSPCTG00005000725	ZNF684 (ENSPCTG00005000746) #11	EXO5 (ENSPCTG00005000767) #12	ZFP69 (ENSPCTG00005000774) #13	ZFP69B (ENSPCTG00005000787) #14	SMAP2 (ENSPCTG00005000816)	ENSPCTG00005000858	COL9A2 (ENSPCTG00005000884) #15	ZMPSTE24 (ENSPCTG00005000946) #16	TMCO2 (ENSPCTG00005000997) #17	RLF (ENSPCTG00005001013) #18	PPT1 (ENSPCTG00005001029) #19	ENSPCTG00005001041 #20	MYCL (ENSPCTG00005001056) #22	TRIT1 (ENSPCTG00005001108) #23	ENSPCTG00005001192 #24	ENSPCTG00005001205	PPIE (ENSPCTG00005001275) #25	HPCAL4 (ENSPCTG00005001433) #26	NT5C1A (ENSPCTG00005001445) #27	HEYL (ENSPCTG00005001467) #28	ENSPCTG00005001487 #29	ENSPCTG00005001506 #24	MACF1 (ENSPCTG00005001870) #31	ENSPCTG00005003419	RRAGC (ENSPCTG00005003438) #37	MYCBP (ENSPCTG00005003457)	GJA9 (ENSPCTG00005003465) #35	RHBDL2 (ENSPCTG00005003477) #34
Blue whale	MODERN SPECIES		RIMS3 (ENSBMSG00010009686) #10	ENSBMSG00010009674	ZNF684 (ENSBMSG00010009663) #11	EXO5 (ENSBMSG00010009654) #12	ZFP69 (ENSBMSG00010009643) #13	ENSBMSG00010009632	ENSBMSG00010009624	SMAP2 (ENSBMSG00010009600)	COL9A2 (ENSBMSG00010003237) #15	ZMPSTE24 (ENSBMSG00010003220) #16	TMCO2 (ENSBMSG00010003207) #17	RLF (ENSBMSG00010003196) #18	PPT1 (ENSBMSG00010003133) #19	CAP1 (ENSBMSG00010003102) #20	MFSD2A (ENSBMSG00010003050) #21	MYCL (ENSBMSG00010003030) #22	ENSBMSG00010003020 #23	ENSBMSG00010003005 #23	ENSBMSG00010002990	ENSBMSG00010002978 #24	ENSBMSG00010002967 #25	HPCAL4 (ENSBMSG00010002948) #26	NT5C1A (ENSBMSG00010002931) #27	HEYL (ENSBMSG00010002923) #28	ENSBMSG00010002892 #29	ENSBMSG00010002858 #25	ENSBMSG00010002847	ENSBMSG00010002837 #24	ENSBMSG00010002830	MACF1 (ENSBMSG00010002618) #31	NDUFS5 (ENSBMSG00010002425) #32
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Yarkand deer	MODERN SPECIES	12	NFYC (ENSCHYG00000015029) #9	RIMS3 (ENSCHYG00000015596) #10	ENSCHYG00000015713	ZNF684 (ENSCHYG00000015737) #11	EXO5 (ENSCHYG00000015822) #12	ZFP69 (ENSCHYG00000015853) #13	ZFP69B (ENSCHYG00000015997) #14	SMAP2 (ENSCHYG00000016181)	COL9A2 (ENSCHYG00000016349) #15	ZMPSTE24 (ENSCHYG00000017010) #16	TMCO2 (ENSCHYG00000017083) #17	RLF (ENSCHYG00000017117) #18	PPT1 (ENSCHYG00000017225) #19	CAP1 (ENSCHYG00000017634) #20	MFSD2A (ENSCHYG00000017841) #21	MYCL (ENSCHYG00000018013) #22	TRIT1 (ENSCHYG00000018136) #23	PPIE (ENSCHYG00000018625) #25	HPCAL4 (ENSCHYG00000018782) #26	NT5C1A (ENSCHYG00000018911) #27	HEYL (ENSCHYG00000018992) #28	ENSCHYG00000019106 #29	MACF1 (ENSCHYG00000019881) #31	ENSCHYG00000026566	ENSCHYG00000026593 #32	RHBDL2 (ENSCHYG00000026637) #34	GJA9 (ENSCHYG00000026651) #35	ENSCHYG00000026657 #36	RRAGC (ENSCHYG00000026668) #37	POU3F1 (ENSCHYG00000026684)	UTP11 (ENSCHYG00000026688)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a #37
Siberian musk deer	MODERN SPECIES	341	KCNQ4 (ENSMMSG00000004723) #8	NFYC (ENSMMSG00000004890) #9	RIMS3 (ENSMMSG00000005005) #10	ENSMMSG00000005033 #11	EXO5 (ENSMMSG00000005044) #12	ZFP69 (ENSMMSG00000005053) #13	SMAP2 (ENSMMSG00000005092)	TMCO2 (ENSMMSG00000005220) #17	COL9A2 (ENSMMSG00000005256) #15	ZMPSTE24 (ENSMMSG00000005324) #16	RLF (ENSMMSG00000005369) #18	ENSMMSG00000005421	PPT1 (ENSMMSG00000005470) #19	CAP1 (ENSMMSG00000005620) #20	MFSD2A (ENSMMSG00000005706) #21	MYCL (ENSMMSG00000005769) #22	TRIT1 (ENSMMSG00000005816) #23	ENSMMSG00000005898 #24	ENSMMSG00000005998	ENSMMSG00000006010	ENSMMSG00000006028	ENSMMSG00000006054	ENSMMSG00000006072 #29	HEYL (ENSMMSG00000006102) #28	NT5C1A (ENSMMSG00000006118) #27	HPCAL4 (ENSMMSG00000006130) #26	ENSMMSG00000006152 #25
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00940000154788.nb.b #29	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.a #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00960000189866	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.d.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00940000165268 #36
Bos	ANCESTRAL SPECIES		ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT01050000245142	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.d.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387	ENSGT00390000002053 #16	ENSGT01050000245142	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.d.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272.k #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155272.l #24	ENSGT00940000155824.C #31	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974	ENSGT00950000183031.A.a.a.yd.b #37
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005029984	ZNF684 (ENSBIXG00005029992) #11	EXO5 (ENSBIXG00005030004) #12	ZFP69 (ENSBIXG00005030017) #13	ENSBIXG00005030028	ENSBIXG00005030050	SMAP2 (ENSBIXG00005030073)	ENSBIXG00005030126	ZMPSTE24 (ENSBIXG00005030180) #16	ENSBIXG00005030197	TMCO2 (ENSBIXG00005030206) #17	RLF (ENSBIXG00005030215) #18	PPT1 (ENSBIXG00005030230) #19	ENSBIXG00005030267 #20	MFSD2A (ENSBIXG00005030283) #21	MYCL (ENSBIXG00005030301) #22	TRIT1 (ENSBIXG00005030335) #23	ENSBIXG00005030403	ENSBIXG00005030409 #24	PPIE (ENSBIXG00005030424) #25	HPCAL4 (ENSBIXG00005030438) #26	NT5C1A (ENSBIXG00005030444) #27	HEYL (ENSBIXG00005001536) #28	ENSBIXG00005001557 #29	ENSBIXG00005029230 #24	MACF1 (ENSBIXG00005029161) #31	NDUFS5 (ENSBIXG00005005003) #32	AKIRIN1 (ENSBIXG00005028804) #33	RHBDL2 (ENSBIXG00005028704) #34	GJA9 (ENSBIXG00005004957) #35	MYCBP (ENSBIXG00005028655)
Cow	MODERN SPECIES	22	KCNQ4 (ENSBTAG00000002644) #8	NFYC (ENSBTAG00000021943) #9	RIMS3 (ENSBTAG00000018726) #10	ENSBTAG00000034332	ZNF684 (ENSBTAG00000000533) #11	EXO5 (ENSBTAG00000000532) #12	ZFP69 (ENSBTAG00000039287) #13	ENSBTAG00000054444	SMAP2 (ENSBTAG00000021922)	ZMPSTE24 (ENSBTAG00000044178) #16	TMCO2 (ENSBTAG00000019698) #17	RLF (ENSBTAG00000019695) #18	PPT1 (ENSBTAG00000013367) #19	CAP1 (ENSBTAG00000013363) #20	MFSD2A (ENSBTAG00000013054) #21	MYCL (ENSBTAG00000054059) #22	TRIT1 (ENSBTAG00000013832) #23	ENSBTAG00000031600	ENSBTAG00000053451 #24	PPIE (ENSBTAG00000047314) #25	HPCAL4 (ENSBTAG00000014538) #26	NT5C1A (ENSBTAG00000002983) #27	HEYL (ENSBTAG00000008688) #28	PABPC4 (ENSBTAG00000017125) #29	BMP8A (ENSBTAG00000050691) #24	MACF1 (ENSBTAG00000021024) #31	ENSBTAG00000053378	NDUFS5 (ENSBTAG00000010232) #32	AKIRIN1 (ENSBTAG00000004715) #33	RHBDL2 (ENSBTAG00000008023) #34	GJA9 (ENSBTAG00000030338) #35
Bos_a	ANCESTRAL SPECIES	1	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT01050000245142	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c.d.a #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155824.C #31	ENSGT00730000111729	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34	ENSGT01090000260070.C #35	ENSGT00390000017974
Domestic yak	MODERN SPECIES	22	RIMS3 (ENSBGRG00000016850) #10	ENSBGRG00000016909	ZNF684 (ENSBGRG00000016941) #11	EXO5 (ENSBGRG00000017012) #12	ZFP69 (ENSBGRG00000017030) #13	ENSBGRG00000017070	SMAP2 (ENSBGRG00000017114)	COL9A2 (ENSBGRG00000017451) #15	ZMPSTE24 (ENSBGRG00000017914) #16	ENSBGRG00000018213	TMCO2 (ENSBGRG00000000230) #17	RLF (ENSBGRG00000000236) #18	ENSBGRG00000000267 #19	ENSBGRG00000000339 #20	MFSD2A (ENSBGRG00000000405) #21	MYCL (ENSBGRG00000000513) #22	TRIT1 (ENSBGRG00000000546) #23	ENSBGRG00000000655	ENSBGRG00000000664 #24	OXCT2 (ENSBGRG00000000695)	PPIE (ENSBGRG00000000726) #25	HPCAL4 (ENSBGRG00000000777) #26	NT5C1A (ENSBGRG00000000790) #27	HEYL (ENSBGRG00000000802) #28	ENSBGRG00000000845 #29	ENSBGRG00000001003	MACF1 (ENSBGRG00000001404) #31	AKIRIN1 (ENSBGRG00000005084) #33	RHBDL2 (ENSBGRG00000005216) #34	ENSBGRG00000005236	GJA9 (ENSBGRG00000005254) #35
Wild yak	MODERN SPECIES	1716												ENSBMUG00000023831 #19	ENSBMUG00000023846 #19	ENSBMUG00000023863 #20	MFSD2A (ENSBMUG00000023897) #21	MYCL (ENSBMUG00000023911) #22	TRIT1 (ENSBMUG00000023957) #23	ENSBMUG00000023965	ENSBMUG00000023989 #24	ENSBMUG00000023995	PPIE (ENSBMUG00000024054) #25
American bison	MODERN SPECIES	3342	RIMS3 (ENSBBBG00000009436) #10	ENSBBBG00000001503	ZNF684 (ENSBBBG00000009434) #11	EXO5 (ENSBBBG00000001501) #12	ZFP69 (ENSBBBG00000001500) #13	ENSBBBG00000001499	ENSBBBG00000007872	SMAP2 (ENSBBBG00000009431)	COL9A2 (ENSBBBG00000001498) #15	ZMPSTE24 (ENSBBBG00000008896) #16	TMCO2 (ENSBBBG00000001497) #17	RLF (ENSBBBG00000001496) #18	PPT1 (ENSBBBG00000009427) #19	ENSBBBG00000008895 #20	MFSD2A (ENSBBBG00000009417) #21	MYCL (ENSBBBG00000001492) #22	TRIT1 (ENSBBBG00000009411) #23	ENSBBBG00000009409	ENSBBBG00000009408 #24	ENSBBBG00000001488	PPIE (ENSBBBG00000009404) #25	HPCAL4 (ENSBBBG00000009399) #26	NT5C1A (ENSBBBG00000009398) #27	HEYL (ENSBBBG00000009396) #28	ENSBBBG00000009395 #29	ENSBBBG00000009391 #24	MACF1 (ENSBBBG00000009386) #31	ENSBBBG00000009364	NDUFS5 (ENSBBBG00000001473) #32	AKIRIN1 (ENSBBBG00000009361) #33	RHBDL2 (ENSBBBG00000001472) #34
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00390000016051.i	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00390000009130.a.b	ENSGT00940000155272.i #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.a #29	ENSGT00940000155272.j #24	ENSGT00730000111729	ENSGT00940000155824.C #31	ENSGT00940000165766	ENSGT00390000002919 #32	ENSGT00940000158787 #33	ENSGT00940000159442 #34
Goat	MODERN SPECIES	22	KCNQ4 (ENSCHIG00000014613) #8	NFYC (ENSCHIG00000021122) #9	RIMS3 (ENSCHIG00000008574) #10	ENSCHIG00000018474	ZNF684 (ENSCHIG00000014482) #11	EXO5 (ENSCHIG00000007542) #12	ZFP69 (ENSCHIG00000008554) #13	ENSCHIG00000001509	SMAP2 (ENSCHIG00000026204)	ZMPSTE24 (ENSCHIG00000014367) #16	TMCO2 (ENSCHIG00000020895) #17	RLF (ENSCHIG00000008734) #18	PPT1 (ENSCHIG00000024964) #19	ENSCHIG00000021156 #20	MFSD2A (ENSCHIG00000005567) #21	MYCL (ENSCHIG00000017111) #22	TRIT1 (ENSCHIG00000013259) #23	ENSCHIG00000019430	ENSCHIG00000025198 #24	ENSCHIG00000012509 #25	HPCAL4 (ENSCHIG00000017598) #26	NT5C1A (ENSCHIG00000026840) #27	HEYL (ENSCHIG00000013434) #28	ENSCHIG00000019398 #29	ENSCHIG00000023905 #25	ENSCHIG00000012300	ENSCHIG00000021022 #24	ENSCHIG00000001374	MACF1 (ENSCHIG00000008154) #31	ENSCHIG00000003870	NDUFS5 (ENSCHIG00000016604) #32
Rambouillet Sheep	MODERN SPECIES		NFYC (ENSOARG00020000047) #9	RIMS3 (ENSOARG00020000046) #10	ENSOARG00020000045	ZNF684 (ENSOARG00020000044) #11	EXO5 (ENSOARG00020000039) #12	ZFP69 (ENSOARG00020026052) #13	SMAP2 (ENSOARG00020026036)	COL9A2 (ENSOARG00020026019) #15	ZMPSTE24 (ENSOARG00020026009) #16	TMCO2 (ENSOARG00020026004) #17	RLF (ENSOARG00020025999) #18	ENSOARG00020025995	PPT1 (ENSOARG00020025978) #19	CAP1 (ENSOARG00020025969) #20	MFSD2A (ENSOARG00020025960) #21	ENSOARG00020025955 #22	TRIT1 (ENSOARG00020025939) #23	ENSOARG00020025927 #24	PPIE (ENSOARG00020025915) #25	HPCAL4 (ENSOARG00020025905) #26	NT5C1A (ENSOARG00020025901) #27	HEYL (ENSOARG00020025898) #28	PABPC4 (ENSOARG00020025866) #29	ENSOARG00020025851	ENSOARG00020025845 #24	ENSOARG00020025841	MACF1 (ENSOARG00020018731) #31	NDUFS5 (ENSOARG00020018138) #32	AKIRIN1 (ENSOARG00020017964) #33	ENSOARG00020017826 #36	RRAGC (ENSOARG00020017615) #37
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Xenarthra	ANCESTRAL SPECIES	150	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23
Armadillo	MODERN SPECIES	767	NFYC (ENSDNOG00000045603) #9	ENSDNOG00000045744	RIMS3 (ENSDNOG00000033940) #10	ZNF684 (ENSDNOG00000032206) #11	EXO5 (ENSDNOG00000042481) #12	ZFP69 (ENSDNOG00000007479) #13	ZFP69B (ENSDNOG00000017460) #14	SMAP2 (ENSDNOG00000007914)	COL9A2 (ENSDNOG00000043096) #15	ZMPSTE24 (ENSDNOG00000038575) #16	TMCO2 (ENSDNOG00000045954) #17	RLF (ENSDNOG00000035279) #18	PPT1 (ENSDNOG00000005527) #19	ENSDNOG00000016869 #20	MFSD2A (ENSDNOG00000014078) #21	MYCL (ENSDNOG00000001996) #22	TRIT1 (ENSDNOG00000001994) #23	ENSDNOG00000044541 #24	ENSDNOG00000034942 #25	NT5C1A (ENSDNOG00000014666) #27	HEYL (ENSDNOG00000010392) #28	ENSDNOG00000018444 #29	ENSDNOG00000002404 #25	ENSDNOG00000040636 #24	ENSDNOG00000041309
Afrotheria	ANCESTRAL SPECIES	42	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Tenrec	MODERN SPECIES	1765																MYCL (ENSETEG00000007072) #22
Afrotheria_a	ANCESTRAL SPECIES	42	ENSGT00940000159209 #8	ENSGT00940000155689 #9	ENSGT00940000159332 #10	ENSGT00940000163099 #11	ENSGT00390000015205 #12	ENSGT00940000162278 #13	ENSGT00940000163434 #14	ENSGT00940000158387	ENSGT00940000161290 #15	ENSGT00390000002053 #16	ENSGT00390000001528 #17	ENSGT00950000183034.B #18	ENSGT00940000156790 #19	ENSGT00390000017955.c #20	ENSGT00390000005318.b.b.b #21	ENSGT00940000158613 #22	ENSGT00390000015214 #23	ENSGT00940000155272 #24	ENSGT00390000009130.a.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Elephant	DUPLICATION
Elephant	MODERN SPECIES	332	ENSLAFG00000025893	CITED4 (ENSLAFG00000031244) #7	NFYC (ENSLAFG00000001223) #9	KCNQ4 (ENSLAFG00000023336) #8	RIMS3 (ENSLAFG00000010340) #10	EXO5 (ENSLAFG00000011024) #12	ZFP69B (ENSLAFG00000011022) #14	SMAP2 (ENSLAFG00000008783)	COL9A2 (ENSLAFG00000004588) #15	ZMPSTE24 (ENSLAFG00000015734) #16	TMCO2 (ENSLAFG00000015728) #17	RLF (ENSLAFG00000015722) #18	PPT1 (ENSLAFG00000022663) #19	CAP1 (ENSLAFG00000005592) #20	MFSD2A (ENSLAFG00000003074) #21	ENSLAFG00000001935 #22	TRIT1 (ENSLAFG00000016876) #23	ENSLAFG00000031581 #24	ENSLAFG00000008493 #25	HPCAL4 (ENSLAFG00000012324) #26	NT5C1A (ENSLAFG00000027551) #27	HEYL (ENSLAFG00000027563) #28	PABPC4 (ENSLAFG00000000151) #29	ENSLAFG00000028312 #25	ENSLAFG00000017624	ENSLAFG00000010722 #24	ENSLAFG00000030249	MACF1 (ENSLAFG00000011552) #31	NDUFS5 (ENSLAFG00000016100) #32	AKIRIN1 (ENSLAFG00000029942) #33	RHBDL2 (ENSLAFG00000002521) #34
Elephant	MODERN SPECIES	453	MAOB (ENSLAFG00000015027)	MAOA (ENSLAFG00000000503)	PPP1R2C (ENSLAFG00000004738)	CASK (ENSLAFG00000006945)	GPR82 (ENSLAFG00000006951)	GPR34 (ENSLAFG00000006949)	NYX (ENSLAFG00000015300)	DDX3X (ENSLAFG00000017378)	ENSLAFG00000017387	USP9X (ENSLAFG00000008552)	ENSLAFG00000027634	MED14 (ENSLAFG00000012068)	CXorf38 (ENSLAFG00000012064)	MPC1L (ENSLAFG00000027876)	ATP6AP2 (ENSLAFG00000017858)	ENSLAFG00000030399 #22	BCOR (ENSLAFG00000014446)	MID1IP1 (ENSLAFG00000030491)	TSPAN7 (ENSLAFG00000006016)	OTC (ENSLAFG00000009919)	ENSLAFG00000023163	SRPX (ENSLAFG00000002956)
Hyrax	MODERN SPECIES	9323																MYCL (ENSPCAG00000007285) #22