Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000153801.a #7	ENSGT00940000160286 #8	ENSGT00940000160060 #9	ENSGT00390000017359 #10	ENSGT00940000156947 #11	ENSGT00940000161859 #12	ENSGT00390000006233.c.a.a #13	ENSGT00940000160198 #14	ENSGT00530000063694.a #15	ENSGT00950000183213.a.a.b #16	ENSGT00940000157079.a #17	ENSGT00940000159044 #18	ENSGT00530000063113.C #19	ENSGT00940000156866 #20	ENSGT00390000007125.b #21	ENSGT00390000014412 #22	ENSGT00940000158996 #23	ENSGT00940000161735.k #24	ENSGT00950000183180.a.b #25	ENSGT00390000017030.b.b #26	ENSGT00940000158438 #27	ENSGT00940000162408 #28	ENSGT01090000260100.A #30	ENSGT00390000006663 #29	ENSGT00940000157078 #31	ENSGT00510000048041 #32	ENSGT00940000160887 #33	ENSGT00940000160955 #34	ENSGT01030000234648.a.b.a.a.a #35	ENSGT00730000111329 #36	ENSGT00410000025882.b #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000153801.a #7	ENSGT00940000160286 #8	ENSGT00940000160060 #9	ENSGT00390000017359 #10	ENSGT00940000156947 #11	ENSGT00940000161859 #12	ENSGT00390000006233.c.a.a #13	ENSGT00940000160198 #14	ENSGT00530000063694.a #15	ENSGT00950000183213.a.a.b #16	ENSGT00940000157079.a #17	ENSGT00940000159044 #18	ENSGT00530000063113.C #19	ENSGT00940000156866 #20	ENSGT00390000007125.b #21	ENSGT00390000014412 #22	ENSGT00940000158996 #23	ENSGT00940000161735.k #24	ENSGT00950000183180.a.b #25	ENSGT00390000017030.b.b #26	ENSGT00940000158438 #27	ENSGT00940000162408 #28	ENSGT01090000260100.A #30	ENSGT00390000006663 #29	ENSGT00940000157078 #31	ENSGT00510000048041 #32	ENSGT00940000160887 #33	ENSGT00940000160955 #34	ENSGT01030000234648.a.b.a.a.a #35	ENSGT00730000111329 #36	ENSGT00410000025882.b #37
Mouse	MODERN SPECIES	8	Decr2 (ENSMUSG00000036775) #7	Nme4 (ENSMUSG00000024177) #8	Pgap6 (ENSMUSG00000024180) #9	Mrpl28 (ENSMUSG00000024181) #10	Axin1 (ENSMUSG00000024182) #11	Pdia2 (ENSMUSG00000024184) #12	Arhgdig (ENSMUSG00000073433) #13	Rgs11 (ENSMUSG00000024186) #14	Fam234a (ENSMUSG00000024187) #15	Luc7l (ENSMUSG00000024188) #16	Neurl1b (ENSMUSG00000034413) #17	Dusp1 (ENSMUSG00000024190) #18	Ergic1 (ENSMUSG00000001576) #19	Atp6v0e (ENSMUSG00000015575) #20	Crebrf (ENSMUSG00000048249) #21	Bnip1 (ENSMUSG00000024191) #22	Nkx2-5 (ENSMUSG00000015579) #23	Kifc5b (ENSMUSG00000024301) #24	Phf1 (ENSMUSG00000024193) #25	Cuta (ENSMUSG00000024194) #26	Syngap1 (ENSMUSG00000067629) #27	Zbtb9 (ENSMUSG00000079605) #28	Ggnbp1 (ENSMUSG00000048731) #29	Bak1 (ENSMUSG00000057789) #30	Itpr3 (ENSMUSG00000042644) #31	Uqcc2 (ENSMUSG00000024208) #32	Ip6k3 (ENSMUSG00000024210) #33	Lemd2 (ENSMUSG00000044857) #34	Grm4 (ENSMUSG00000063239) #35	Hmga1 (ENSMUSG00000046711) #36	Smim29 (ENSMUSG00000062753) #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000153801.a #7	ENSGT00940000160286 #8	ENSGT00940000160060 #9	ENSGT00390000017359 #10	ENSGT00940000156947 #11	ENSGT00940000161859 #12	ENSGT00390000006233.c.a.a #13	ENSGT00940000160198 #14	ENSGT00530000063694.a #15	ENSGT00950000183213.a.a.b #16	ENSGT00940000157079.a #17	ENSGT00940000159044 #18	ENSGT00530000063113.C #19	ENSGT00940000156866 #20	ENSGT00390000007125.b #21	ENSGT00390000014412 #22	ENSGT00940000158996 #23	ENSGT00940000161735.k #24	ENSGT00950000183180.a.b #25	ENSGT00390000017030.b.b #26	ENSGT00940000158438 #27	ENSGT00940000162408 #28	ENSGT01090000260100.A #30	ENSGT00390000006663 #29	ENSGT00940000157078 #31	ENSGT00510000048041 #32	ENSGT00940000160887 #33	ENSGT00940000160955 #34	ENSGT01030000234648.a.b.a.a.a #35	ENSGT00730000111329 #36	ENSGT00410000025882.b #37
spretus	MODERN SPECIES	8	Pgap6 (MGP_SPRETEiJ_G0022183) #9	Mrpl28 (MGP_SPRETEiJ_G0022184) #10	Axin1 (MGP_SPRETEiJ_G0022185) #11	Pdia2 (MGP_SPRETEiJ_G0022186) #12	Arhgdig (MGP_SPRETEiJ_G0022187) #13	Rgs11 (MGP_SPRETEiJ_G0022188) #14	Fam234a (MGP_SPRETEiJ_G0022189) #15	Luc7l (MGP_SPRETEiJ_G0022190) #16	MGP_SPRETEiJ_G0022191	MGP_SPRETEiJ_G0022192	Neurl1b (MGP_SPRETEiJ_G0022193) #17	Dusp1 (MGP_SPRETEiJ_G0022194) #18	Ergic1 (MGP_SPRETEiJ_G0022195) #19	MGP_SPRETEiJ_G0022196 #20	Crebrf (MGP_SPRETEiJ_G0022197) #21	Bnip1 (MGP_SPRETEiJ_G0022198) #22	Nkx2-5 (MGP_SPRETEiJ_G0022199) #23	MGP_SPRETEiJ_G0022200 #24	MGP_SPRETEiJ_G0022201 #24	Phf1 (MGP_SPRETEiJ_G0022202) #25	Cuta (MGP_SPRETEiJ_G0022203) #26	Syngap1 (MGP_SPRETEiJ_G0022204) #27	Zbtb9 (MGP_SPRETEiJ_G0022205) #28	Ggnbp1 (MGP_SPRETEiJ_G0022206) #29	Bak1 (MGP_SPRETEiJ_G0022207) #30	Itpr3 (MGP_SPRETEiJ_G0022208) #31	Uqcc2 (MGP_SPRETEiJ_G0022209) #32	Ip6k3 (MGP_SPRETEiJ_G0022210) #33	Lemd2 (MGP_SPRETEiJ_G0022211) #34	Grm4 (MGP_SPRETEiJ_G0022212) #35	MGP_SPRETEiJ_G0022213 #36
Steppe mouse	MODERN SPECIES	2698	Mrpl28 (ENSMSIG00000023867) #10	Axin1 (ENSMSIG00000023878) #11	Arhgdig (ENSMSIG00000023904) #13	Pdia2 (ENSMSIG00000023925) #12	Rgs11 (ENSMSIG00000023974) #14	Fam234a (ENSMSIG00000024174) #15	Luc7l (ENSMSIG00000024237) #16	ENSMSIG00000024264	Neurl1b (ENSMSIG00000025549) #17	ENSMSIG00000025563	Dusp1 (ENSMSIG00000025579) #18	ENSMSIG00000025591	Ergic1 (ENSMSIG00000025604) #19	ENSMSIG00000025620 #20	Crebrf (ENSMSIG00000025640) #21	Bnip1 (ENSMSIG00000025666) #22	Nkx2-5 (ENSMSIG00000025708) #23
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021270 #7	Nme4 (MGP_CAROLIEiJ_G0021271) #8	Pgap6 (MGP_CAROLIEiJ_G0021272) #9	Mrpl28 (MGP_CAROLIEiJ_G0021273) #10	Axin1 (MGP_CAROLIEiJ_G0021274) #11	Pdia2 (MGP_CAROLIEiJ_G0021275) #12	Arhgdig (MGP_CAROLIEiJ_G0021276) #13	Rgs11 (MGP_CAROLIEiJ_G0021277) #14	Fam234a (MGP_CAROLIEiJ_G0021278) #15	Luc7l (MGP_CAROLIEiJ_G0021279) #16	Neurl1b (MGP_CAROLIEiJ_G0021280) #17	Dusp1 (MGP_CAROLIEiJ_G0021281) #18	Ergic1 (MGP_CAROLIEiJ_G0021282) #19	MGP_CAROLIEiJ_G0021283 #20	Crebrf (MGP_CAROLIEiJ_G0021284) #21	Bnip1 (MGP_CAROLIEiJ_G0021285) #22	Nkx2-5 (MGP_CAROLIEiJ_G0021286) #23	MGP_CAROLIEiJ_G0021287 #24	Phf1 (MGP_CAROLIEiJ_G0021289) #25	Cuta (MGP_CAROLIEiJ_G0021290) #26	Syngap1 (MGP_CAROLIEiJ_G0021291) #27	Zbtb9 (MGP_CAROLIEiJ_G0021292) #28	Ggnbp1 (MGP_CAROLIEiJ_G0021293) #29	Bak1 (MGP_CAROLIEiJ_G0021294) #30	Itpr3 (MGP_CAROLIEiJ_G0021295) #31	Uqcc2 (MGP_CAROLIEiJ_G0021296) #32	Ip6k3 (MGP_CAROLIEiJ_G0021297) #33	Lemd2 (MGP_CAROLIEiJ_G0021298) #34	Grm4 (MGP_CAROLIEiJ_G0021299) #35	MGP_CAROLIEiJ_G0021300 #36	MGP_CAROLIEiJ_G0021301 #36