Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000156072 #7	ENSGT00940000156529 #8	ENSGT00940000158412.j #9	ENSGT00950000183056.A.a #10	ENSGT00530000067301 #11	ENSGT00390000004173 #12	ENSGT01070000253847 #13	ENSGT00940000159599 #14	ENSGT00620000087993.a.b #15	ENSGT00940000157260 #17	ENSGT00520000055567.b #16	ENSGT00940000157740 #18	ENSGT00940000163172 #19	ENSGT00940000153295.a.n #20	ENSGT00390000007879 #21	ENSGT00950000182802.B.a.a.a.a.i.b #22	ENSGT00940000159314 #23	ENSGT00940000155194 #24	ENSGT00390000013174 #25	ENSGT00940000156585 #26	ENSGT01090000260040.b.b.b.a #27	ENSGT00950000183172.B #28	ENSGT00390000004191 #29	ENSGT00390000015719.c #30	ENSGT00940000155361 #31	ENSGT00390000016565 #32	ENSGT00390000017418	ENSGT00940000160747 #33	ENSGT00940000156338 #34	ENSGT00950000182900.B #35	ENSGT00390000007371 #36
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000156072 #7	ENSGT00940000156529 #8	ENSGT00940000158412.j #9	ENSGT00950000183056.A.a #10	ENSGT00530000067301 #11	ENSGT00390000004173 #12	ENSGT01070000253847 #13	ENSGT00940000159599 #14	ENSGT00620000087993.a.b #15	ENSGT00940000157260 #17	ENSGT00520000055567.b #16	ENSGT00940000157740 #18	ENSGT00940000163172 #19	ENSGT00940000153295.a.n #20	ENSGT00390000007879 #21	ENSGT00950000182802.B.a.a.a.a.i.b #22	ENSGT00940000159314 #23	ENSGT00940000155194 #24	ENSGT00390000013174 #25	ENSGT00940000156585 #26	ENSGT01090000260040.b.b.b.a #27	ENSGT00950000183172.B #28	ENSGT00390000004191 #29	ENSGT00390000015719.c #30	ENSGT00940000155361 #31	ENSGT00390000016565 #32	ENSGT00390000017418	ENSGT00940000160747 #33	ENSGT00940000156338 #34	ENSGT00950000182900.B #35	ENSGT00390000007371 #36
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000156072 #7	ENSGT00940000156529 #8	ENSGT00940000158412.j #9	ENSGT00950000183056.A.a #10	ENSGT00530000067301 #11	ENSGT00390000004173 #12	ENSGT01070000253847 #13	ENSGT00940000159599 #14	ENSGT00620000087993.a.b #15	ENSGT00940000157260 #17	ENSGT00520000055567.b #16	ENSGT00940000157740 #18	ENSGT00940000163172 #19	ENSGT00940000153295.a.n #20	ENSGT00390000007879 #21	ENSGT00950000182802.B.a.a.a.a.i.b #22	ENSGT00940000159314 #23	ENSGT00940000155194 #24	ENSGT00390000013174 #25	ENSGT00940000156585 #26	ENSGT01090000260040.b.b.b.a #27	ENSGT00950000183172.B #28	ENSGT00390000004191 #29	ENSGT00390000015719.c #30	ENSGT00940000155361 #31	ENSGT00390000016565 #32	ENSGT00390000017418	ENSGT00940000160747 #33	ENSGT00940000156338 #34	ENSGT00950000182900.B #35	ENSGT00390000007371 #36
Long-tailed chinchilla	MODERN SPECIES	159	SLC30A2 (ENSCLAG00000010472) #7	TRIM63 (ENSCLAG00000009429) #8	PDIK1L (ENSCLAG00000010649) #9	FAM110D (ENSCLAG00000010682) #10	C1orf232 (ENSCLAG00000011904) #11	ZNF593 (ENSCLAG00000011066) #12	ZNF593OS (ENSCLAG00000010913) #13	CNKSR1 (ENSCLAG00000006569) #14	CEP85 (ENSCLAG00000008438) #15	UBXN11 (ENSCLAG00000009843) #16	SH3BGRL3 (ENSCLAG00000007979) #17	CRYBG2 (ENSCLAG00000009319) #18	ZNF683 (ENSCLAG00000014629) #19	LIN28A (ENSCLAG00000013508) #20	DHDDS (ENSCLAG00000009304) #21	HMGN2 (ENSCLAG00000008674) #22	RPS6KA1 (ENSCLAG00000012043) #23	ARID1A (ENSCLAG00000008499) #24	PIGV (ENSCLAG00000011353) #25	ZDHHC18 (ENSCLAG00000015099) #26	SFN (ENSCLAG00000018088) #27	GPN2 (ENSCLAG00000015368) #28	GPATCH3 (ENSCLAG00000012064) #29	NR0B2 (ENSCLAG00000012438) #30	NUDC (ENSCLAG00000008191) #31	KDF1 (ENSCLAG00000009636) #32	TENT5B (ENSCLAG00000010180) #33	SLC9A1 (ENSCLAG00000011250) #34	WDTC1 (ENSCLAG00000012710) #35	TMEM222 (ENSCLAG00000014379) #36	SYTL1 (ENSCLAG00000011750) #37
Guinea pig	MODERN SPECIES	25	SLC30A2 (ENSCPOG00000003475) #7	TRIM63 (ENSCPOG00000022922) #8	PDIK1L (ENSCPOG00000011692) #9	FAM110D (ENSCPOG00000039832) #10	C1orf232 (ENSCPOG00000030787) #11	ZNF593OS (ENSCPOG00000031348) #13	ZNF593 (ENSCPOG00000035949) #12	CNKSR1 (ENSCPOG00000007056) #14	CEP85 (ENSCPOG00000007069) #15	SH3BGRL3 (ENSCPOG00000007077) #17	UBXN11 (ENSCPOG00000024029) #16	CRYBG2 (ENSCPOG00000007086) #18	ZNF683 (ENSCPOG00000030245) #19	ENSCPOG00000019646 #20	DHDDS (ENSCPOG00000008087) #21	HMGN2 (ENSCPOG00000039945) #22	RPS6KA1 (ENSCPOG00000003945) #23	ENSCPOG00000021806	ARID1A (ENSCPOG00000010387) #24	ENSCPOG00000033509 #25	ZDHHC18 (ENSCPOG00000010395) #26	SFN (ENSCPOG00000035257) #27	GPN2 (ENSCPOG00000002848) #28	GPATCH3 (ENSCPOG00000010404) #29	NR0B2 (ENSCPOG00000010409) #30	NUDC (ENSCPOG00000010413) #31	KDF1 (ENSCPOG00000022999) #32	TENT5B (ENSCPOG00000032542) #33	SLC9A1 (ENSCPOG00000035897) #34	WDTC1 (ENSCPOG00000012347) #35	TMEM222 (ENSCPOG00000020198) #36
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000011488	ENSHGLG00000012382	ENSHGLG00000016465	ENSHGLG00000046414	ITPRIPL2 (ENSHGLG00000037760)	COQ7 (ENSHGLG00000018991)	ENSHGLG00000018929	ENSHGLG00000010031	ENSHGLG00000040318	CCP110 (ENSHGLG00000018807)	VPS35L (ENSHGLG00000018818)	KNOP1 (ENSHGLG00000049260)	IQCK (ENSHGLG00000014331)	ENSHGLG00000049053	GPR139 (ENSHGLG00000034334)	ENSHGLG00000050561 #22	ENSHGLG00000009974	UMOD (ENSHGLG00000006685)	PDILT (ENSHGLG00000008450)	ACSM5 (ENSHGLG00000010732)	ENSHGLG00000011441	ENSHGLG00000037112	ENSHGLG00000012971	ENSHGLG00000006014	ENSHGLG00000049216	ENSHGLG00000007282	ENSHGLG00000049148	ENSHGLG00000007912	BFAR (ENSHGLG00000008907)	PARN (ENSHGLG00000010886)	MRTFB (ENSHGLG00000019009)