Murinae	ANCESTRAL SPECIES	26												ENSGT00940000153661.a.b.a.b.a.a	ENSGT00940000156286.pb #19	ENSGT00390000003224.A #20	ENSGT00950000182846.a.a.a.b #21	ENSGT00510000047225 #22	ENSGT00510000048121	ENSGT00530000065109 #23	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967 #31	ENSGT00940000155048 #33	ENSGT00390000005214 #34	ENSGT00940000160100 #36	ENSGT00590000083094.a.a #37	ENSGT01030000234637.b.d.b
Mus	ANCESTRAL SPECIES	8												ENSGT00860000135929	ENSGT00940000156286.pb #19	ENSGT00390000003224.A #20	ENSGT00950000182846.a.a.a.b #21	ENSGT00510000047225 #22	ENSGT00510000048121	ENSGT00530000065109 #23	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967 #31	ENSGT00940000155048 #33	ENSGT00390000005214 #34	ENSGT00940000160100 #36	ENSGT00590000083094.a.a #37	ENSGT01030000234637.b.d.b
Mus_A	ANCESTRAL SPECIES	12												ENSGT00860000135929	ENSGT00940000156286.pb #19	ENSGT00390000003224.A #20	ENSGT00950000182846.a.a.a.b #21	ENSGT00510000047225 #22	ENSGT00510000048121	ENSGT00530000065109 #23	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967 #31	ENSGT00940000155048 #33	ENSGT00390000005214 #34	ENSGT00940000160100 #36	ENSGT00590000083094.a.a #37	ENSGT01030000234637.b.d.b
Mus_B	ANCESTRAL SPECIES	11												ENSGT00860000135929	ENSGT00940000156286.pb #19	ENSGT00390000003224.A #20	ENSGT00950000182846.a.a.a.b #21	ENSGT00510000047225 #22	ENSGT00510000048121	ENSGT00530000065109 #23	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967 #31	ENSGT00940000155048 #33	ENSGT00390000005214 #34	ENSGT00940000160100 #36	ENSGT00590000083094.a.a #37	ENSGT01030000234637.b.d.b
Mouse	MODERN SPECIES	5	Gm10406 (ENSMUSG00000093985) #7	Gm3685 (ENSMUSG00000094021) #8	Gm3696 (ENSMUSG00000092167) #9	Gm6676 (ENSMUSG00000096869) #10	Gm3512 (ENSMUSG00000090363) #11	Gm16434 (ENSMUSG00000095015) #12	Gm3739 (ENSMUSG00000091472) #13	Gm5797 (ENSMUSG00000072726) #14	Gm3752 (ENSMUSG00000091617) #15	Gm3558 (ENSMUSG00000079364) #16	Gm10338 (ENSMUSG00000094706) #17	Gm10128 (ENSMUSG00000063277) #18	Flnb (ENSMUSG00000025278) #19	Gm45521 (ENSMUSG00000109649) #20	Dnase1l3 (ENSMUSG00000025279) #21	Abhd6 (ENSMUSG00000025277) #22	Rpp14 (ENSMUSG00000023156) #23	Pxk (ENSMUSG00000033885) #24	Pdhb (ENSMUSG00000021748) #25	Kctd6 (ENSMUSG00000021752) #26	Acox2 (ENSMUSG00000021751) #27	Fam107a (ENSMUSG00000021750) #28	Fam3d (ENSMUSG00000021749) #29	Cfap20dc (ENSMUSG00000021747) #30	Fhit (ENSMUSG00000060579) #31	Gm3839 (ENSMUSG00000097148) #32	PTPRG (ENSMUSG00000121513) #33	3830406C13Rik (ENSMUSG00000033111) #34	Gm49355 (ENSMUSG00000114378) #35	Fezf2 (ENSMUSG00000021743) #36	Cadps (ENSMUSG00000054423) #37
Mus_C	ANCESTRAL SPECIES	26												ENSGT00860000135929	ENSGT00940000156286.pb #19	ENSGT00390000003224.A #20	ENSGT00950000182846.a.a.a.b #21	ENSGT00510000047225 #22	ENSGT00510000048121	ENSGT00530000065109 #23	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967 #31	ENSGT00940000155048 #33	ENSGT00390000005214 #34	ENSGT00940000160100 #36	ENSGT00590000083094.a.a #37	ENSGT01030000234637.b.d.b
Steppe mouse	MODERN SPECIES	2532												ENSMSIG00000013183	Flnb (ENSMSIG00000013237) #19	ENSMSIG00000013348 #20	Dnase1l3 (ENSMSIG00000013352) #21	Abhd6 (ENSMSIG00000013377) #22	ENSMSIG00000013396	Rpp14 (ENSMSIG00000013425) #23	ENSMSIG00000013429	Pdhb (ENSMSIG00000013665) #25	Kctd6 (ENSMSIG00000013714) #26	Acox2 (ENSMSIG00000013728) #27	Fam107a (ENSMSIG00000013777) #28	Fam3d (ENSMSIG00000013802) #29
spretus	MODERN SPECIES	5													MGP_SPRETEiJ_G0019813	Flnb (MGP_SPRETEiJ_G0019814) #19	Dnase1l3 (MGP_SPRETEiJ_G0019815) #21	Abhd6 (MGP_SPRETEiJ_G0019816) #22	Rpp14 (MGP_SPRETEiJ_G0019817) #23	Pxk (MGP_SPRETEiJ_G0019818) #24	Pdhb (MGP_SPRETEiJ_G0019819) #25	Kctd6 (MGP_SPRETEiJ_G0019820) #26	Acox2 (MGP_SPRETEiJ_G0019821) #27	Fam107a (MGP_SPRETEiJ_G0019822) #28	Fam3d (MGP_SPRETEiJ_G0019823) #29	Cfap20dc (MGP_SPRETEiJ_G0019824) #30	Fhit (MGP_SPRETEiJ_G0019825) #31	MGP_SPRETEiJ_G0019826 #33	MGP_SPRETEiJ_G0019827 #34	Fezf2 (MGP_SPRETEiJ_G0019828) #36	Cadps (MGP_SPRETEiJ_G0019829) #37	Synpr (MGP_SPRETEiJ_G0019830)	Sntn (MGP_SPRETEiJ_G0019831)
Ryukyu mouse	MODERN SPECIES	5													MGP_CAROLIEiJ_G0018936	Flnb (MGP_CAROLIEiJ_G0018937) #19	Dnase1l3 (MGP_CAROLIEiJ_G0018938) #21	Abhd6 (MGP_CAROLIEiJ_G0018939) #22	Rpp14 (MGP_CAROLIEiJ_G0018940) #23	Pxk (MGP_CAROLIEiJ_G0018941) #24	Pdhb (MGP_CAROLIEiJ_G0018942) #25	Kctd6 (MGP_CAROLIEiJ_G0018943) #26	Acox2 (MGP_CAROLIEiJ_G0018944) #27	Fam107a (MGP_CAROLIEiJ_G0018945) #28	Fam3d (MGP_CAROLIEiJ_G0018946) #29	Cfap20dc (MGP_CAROLIEiJ_G0018947) #30	Fhit (MGP_CAROLIEiJ_G0018948) #31	MGP_CAROLIEiJ_G0018949	MGP_CAROLIEiJ_G0018950 #33	MGP_CAROLIEiJ_G0018951 #34	Fezf2 (MGP_CAROLIEiJ_G0018952) #36	Cadps (MGP_CAROLIEiJ_G0018953) #37	Synpr (MGP_CAROLIEiJ_G0018954)
Shrew mouse	MODERN SPECIES	21													MGP_PahariEiJ_G0029951	Flnb (MGP_PahariEiJ_G0029952) #19	Dnase1l3 (MGP_PahariEiJ_G0029953) #21	Abhd6 (MGP_PahariEiJ_G0029954) #22	Rpp14 (MGP_PahariEiJ_G0029955) #23	Pxk (MGP_PahariEiJ_G0029956) #24	Pdhb (MGP_PahariEiJ_G0029957) #25	Kctd6 (MGP_PahariEiJ_G0029958) #26	Acox2 (MGP_PahariEiJ_G0029959) #27	Fam107a (MGP_PahariEiJ_G0029960) #28	Fam3d (MGP_PahariEiJ_G0029961) #29	Cfap20dc (MGP_PahariEiJ_G0029962) #30	Fhit (MGP_PahariEiJ_G0029963) #31	MGP_PahariEiJ_G0029964 #33	MGP_PahariEiJ_G0029965 #34	Fezf2 (MGP_PahariEiJ_G0029966) #36	Cadps (MGP_PahariEiJ_G0029967) #37	Synpr (MGP_PahariEiJ_G0029968)	Sntn (MGP_PahariEiJ_G0029969)
Rat	MODERN SPECIES	6	LOC120096936 (ENSRNOG00000062649) ##7	LOC120096935 (ENSRNOG00000069315) ##7	ENSRNOG00000070830 ##7	LOC108352875 (ENSRNOG00000069197) ##7	LOC120093160 (ENSRNOG00000063595) ##7	LOC120096939 (ENSRNOG00000065418) ##7	ENSRNOG00000070413 ##7	Ptgdr (ENSRNOG00000031535)	LOC100363427 (ENSRNOG00000066375)	ENSRNOG00000063234	AABR07017236.2 (ENSRNOG00000057837)	AABR07017236.1 (ENSRNOG00000024504)	Flnb (ENSRNOG00000009470) #19	LOC108353015 (ENSRNOG00000061275) #20	Dnase1l3 (ENSRNOG00000009291) #21	Abhd6 (ENSRNOG00000008167) #22	Rpp14 (ENSRNOG00000039829)	Rpp14 (ENSRNOG00000063660) #23	Pxk (ENSRNOG00000008024) #24	Pdhb (ENSRNOG00000007895) #25	AABR07072440.1 (ENSRNOG00000033030)	ENSRNOG00000028821	Kctd6 (ENSRNOG00000007817) #26	Acox2 (ENSRNOG00000007378) #27	Fam107a (ENSRNOG00000033261) #28	Fam3d (ENSRNOG00000007320) #29	ENSRNOG00000070952	Cfap20dc (ENSRNOG00000007206) #30	Fhit (ENSRNOG00000064939) #31	Tpt1-ps2 (ENSRNOG00000070732)	Ptprg (ENSRNOG00000009419) #33