Rodentia_A	ANCESTRAL SPECIES	27																ENSGT00510000047225 #22	ENSGT00510000048121 #23	ENSGT00530000065109	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967	ENSGT00940000163977 #31	ENSGT00940000155048 #32	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a
Hystricomorpha	ANCESTRAL SPECIES	34	ENSGT00390000013390	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494 #7	ENSGT00940000153541.B #8	ENSGT00940000157677 #9	ENSGT00950000182865.a #10	ENSGT00940000156388 #11	ENSGT00940000154791 #12	ENSGT00940000155892 #14	ENSGT00390000018500.b #15	ENSGT00940000156802 #17	ENSGT00940000157248 #18	ENSGT00390000017724.a.a.d #19	ENSGT00940000156679 #20	ENSGT00510000047225 #22	ENSGT00510000048121 #23	ENSGT00530000065109	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00940000163977 #31	ENSGT00940000155048 #32	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b
Hystricomorpha_a	ANCESTRAL SPECIES	50	ENSGT00390000013390	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494 #7	ENSGT00940000153541.B #8	ENSGT00940000157677 #9	ENSGT00950000182865.a #10	ENSGT00940000156388 #11	ENSGT00940000154791 #12	ENSGT00940000155892 #14	ENSGT00390000018500.b #15	ENSGT00940000156802 #17	ENSGT00940000157248 #18	ENSGT00390000017724.a.a.d #19	ENSGT00940000156679 #20	ENSGT00510000047225 #22	ENSGT00510000048121 #23	ENSGT00530000065109	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00940000163977 #31	ENSGT00940000155048 #32	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b
Hystricomorpha_b	ANCESTRAL SPECIES	56	ENSGT00390000013390	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494 #7	ENSGT00940000153541.B #8	ENSGT00940000157677 #9	ENSGT00950000182865.a #10	ENSGT00940000156388 #11	ENSGT00940000154791 #12	ENSGT00940000155892 #14	ENSGT00390000018500.b #15	ENSGT00940000156802 #17	ENSGT00940000157248 #18	ENSGT00390000017724.a.a.d #19	ENSGT00940000156679 #20	ENSGT00510000047225 #22	ENSGT00510000048121 #23	ENSGT00530000065109	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00940000163977 #31	ENSGT00940000155048 #32	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b
Degu	MODERN SPECIES	84	NISCH (ENSODEG00000007768) #7	ENSODEG00000010480 #8	SEMA3G (ENSODEG00000010653) #9	PHF7 (ENSODEG00000008416) #10	BAP1 (ENSODEG00000008927) #11	DNAH1 (ENSODEG00000008443) #12	ENSODEG00000008798 #13	CAPN7 (ENSODEG00000009154) #14	SH3BP5 (ENSODEG00000013984) #15	ENSODEG00000019451 #16	HACL1 (ENSODEG00000007866) #17	COLQ (ENSODEG00000009333) #18	EAF1 (ENSODEG00000008752) #19	METTL6 (ENSODEG00000008650) #20	ENSODEG00000010685 #21	ABHD6 (ENSODEG00000008297) #22	ENSODEG00000010715 #23	PXK (ENSODEG00000009061) #24	PDHB (ENSODEG00000011071) #25	KCTD6 (ENSODEG00000009456) #26	ACOX2 (ENSODEG00000009665) #27	FAM107A (ENSODEG00000009417) #28	FAM3D (ENSODEG00000009550) #29	CFAP20DC (ENSODEG00000010376) #30	ENSODEG00000009079 #31	ENSODEG00000008902 #32
Long-tailed chinchilla	MODERN SPECIES	137	PBRM1 (ENSCLAG00000006512)	NT5DC2 (ENSCLAG00000004490)	STAB1 (ENSCLAG00000009139)	NISCH (ENSCLAG00000006947) #7	TNNC1 (ENSCLAG00000005939) #8	SEMA3G (ENSCLAG00000005845) #9	PHF7 (ENSCLAG00000005775) #10	BAP1 (ENSCLAG00000004745) #11	DNAH1 (ENSCLAG00000006841) #12	CAPN7 (ENSCLAG00000006072) #14	SH3BP5 (ENSCLAG00000005750) #15	HACL1 (ENSCLAG00000005601) #17	COLQ (ENSCLAG00000004933) #18	EAF1 (ENSCLAG00000004790) #19	METTL6 (ENSCLAG00000004710) #20	ABHD6 (ENSCLAG00000007460) #22	HTD2 (ENSCLAG00000007172)	PXK (ENSCLAG00000006771) #24	PDHB (ENSCLAG00000006533) #25	KCTD6 (ENSCLAG00000006383) #26	ACOX2 (ENSCLAG00000006027) #27	FAM107A (ENSCLAG00000008892) #28	FAM3D (ENSCLAG00000008654) #29	ENSCLAG00000011111	CFAP20DC (ENSCLAG00000010156) #30	ENSCLAG00000009212 #31
Guinea pig	MODERN SPECIES		UQCC5 (ENSCPOG00000036380)	NT5DC2 (ENSCPOG00000007433)	STAB1 (ENSCPOG00000021618)	NISCH (ENSCPOG00000003266) #7	TNNC1 (ENSCPOG00000003265) #8	SEMA3G (ENSCPOG00000004316) #9	PHF7 (ENSCPOG00000003251) #10	BAP1 (ENSCPOG00000003241) #11	DNAH1 (ENSCPOG00000003223) #12	CAPN7 (ENSCPOG00000015583) #14	SH3BP5 (ENSCPOG00000015586) #15	HACL1 (ENSCPOG00000024203) #17	COLQ (ENSCPOG00000002476) #18	EAF1 (ENSCPOG00000031143) #19	METTL6 (ENSCPOG00000037082) #20	ABHD6 (ENSCPOG00000037337) #22	RPP14 (ENSCPOG00000004281) #23	HTD2 (ENSCPOG00000036094)	PXK (ENSCPOG00000006707) #24	PDHB (ENSCPOG00000006713) #25	KCTD6 (ENSCPOG00000006719) #26	ACOX2 (ENSCPOG00000006721) #27	FAM107A (ENSCPOG00000014689) #28	FAM3D (ENSCPOG00000014686) #29	CFAP20DC (ENSCPOG00000010572) #30	FHIT (ENSCPOG00000014924)	ENSCPOG00000032909	PTPRG (ENSCPOG00000003197) #32	C3orf14 (ENSCPOG00000006026)	FEZF2 (ENSCPOG00000001697)	ENSCPOG00000001699
Naked mole-rat female	MODERN SPECIES	28	UQCC5 (ENSHGLG00000003313)	NT5DC2 (ENSHGLG00000003527)	STAB1 (ENSHGLG00000003794)	NISCH (ENSHGLG00000004536) #7	TNNC1 (ENSHGLG00000034758) #8	SEMA3G (ENSHGLG00000048828) #9	PHF7 (ENSHGLG00000015052) #10	ENSHGLG00000013658 #11	ENSHGLG00000015068 #12	CAPN7 (ENSHGLG00000018881) #14	ENSHGLG00000002882 #15	ENSHGLG00000003574 #17	COLQ (ENSHGLG00000005340) #18	ENSHGLG00000042411 #19	ENSHGLG00000006022 #20	ABHD6 (ENSHGLG00000043839) #22	HTD2 (ENSHGLG00000047381)	PXK (ENSHGLG00000003319) #24	PDHB (ENSHGLG00000003420) #25	KCTD6 (ENSHGLG00000043396) #26	ACOX2 (ENSHGLG00000003614) #27	FAM107A (ENSHGLG00000039598) #28	ENSHGLG00000044019	ENSHGLG00000042914 #29	CFAP20DC (ENSHGLG00000004034) #30	ENSHGLG00000008440	ENSHGLG00000020136	FHIT (ENSHGLG00000004547)	ENSHGLG00000006739	ENSHGLG00000034459	ENSHGLG00000046435
Sciuridae	ANCESTRAL SPECIES	37	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494 #7	ENSGT00940000153541.B #8	ENSGT00940000157677 #9	ENSGT00950000182865.a #10	ENSGT00940000156388 #11	ENSGT00940000154791 #12	ENSGT00940000155892 #14	ENSGT00390000018500.b #15	ENSGT00940000156679 #20	ENSGT00390000017724.a.a #19	ENSGT00940000157248 #18	ENSGT00940000156802 #17	ENSGT00390000013823.a.d	ENSGT00510000047225 #22	ENSGT00510000048121 #23	ENSGT00530000065109	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967	ENSGT00940000163977 #31	ENSGT00940000155048 #32	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a
Marmotini	ANCESTRAL SPECIES	12	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494 #7	ENSGT00940000153541.B #8	ENSGT00940000157677 #9	ENSGT00950000182865.a #10	ENSGT00940000156388 #11	ENSGT00940000154791 #12	ENSGT00940000155892 #14	ENSGT00390000018500.b #15	ENSGT00940000156679 #20	ENSGT00390000017724.a.a #19	ENSGT00940000157248 #18	ENSGT00940000156802 #17	ENSGT00390000013823.a.d	ENSGT00510000047225 #22	ENSGT00510000048121.a #23	ENSGT00530000065109	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967	ENSGT00940000163977 #31	ENSGT00940000155048 #32	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a
Marmotini_b	ANCESTRAL SPECIES	24	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494 #7	ENSGT00940000153541.B #8	ENSGT00940000157677 #9	ENSGT00950000182865.a #10	ENSGT00940000156388 #11	ENSGT00940000154791 #12	ENSGT00940000155892 #14	ENSGT00390000018500.b #15	ENSGT00940000156679 #20	ENSGT00390000017724.a.a #19	ENSGT00940000157248 #18	ENSGT00940000156802 #17	ENSGT00390000013823.a.d	ENSGT00510000047225 #22	ENSGT00530000065109	ENSGT00510000048121.a.a #23	ENSGT00390000017669 #24	ENSGT00940000155146 #25	ENSGT00940000157869 #26	ENSGT00940000160985 #27	ENSGT00390000011228.b.a #28	ENSGT00950000183004.a.a.a.a #29	ENSGT00390000005497 #30	ENSGT00510000047967
Arctic ground squirrel	MODERN SPECIES	259											METTL6 (ENSUPAG00010017985) #20	EAF1 (ENSUPAG00010017973) #19	COLQ (ENSUPAG00010017933) #18	HACL1 (ENSUPAG00010017918) #17	ENSUPAG00010017908	ABHD6 (ENSUPAG00010017892) #22	ENSUPAG00010017884 #23	PXK (ENSUPAG00010017807) #24	PDHB (ENSUPAG00010017799) #25	KCTD6 (ENSUPAG00010017784) #26	ACOX2 (ENSUPAG00010017757) #27	FAM107A (ENSUPAG00010017743) #28	ENSUPAG00010017673 #29	CFAP20DC (ENSUPAG00010017648) #30	FHIT (ENSUPAG00010017629)
Squirrel	MODERN SPECIES	73	NT5DC2 (ENSSTOG00000027067)	STAB1 (ENSSTOG00000000330)	ENSSTOG00000000327 #7	TNNC1 (ENSSTOG00000000324) #8	SEMA3G (ENSSTOG00000000321) #9	PHF7 (ENSSTOG00000000317) #10	BAP1 (ENSSTOG00000010206) #11	DNAH1 (ENSSTOG00000010134) #12	CAPN7 (ENSSTOG00000014949) #14	SH3BP5 (ENSSTOG00000014966) #15	METTL6 (ENSSTOG00000014974) #20	EAF1 (ENSSTOG00000014978) #19	COLQ (ENSSTOG00000031231) #18	HACL1 (ENSSTOG00000020242) #17	ENSSTOG00000015008	ABHD6 (ENSSTOG00000015390) #22	HTD2 (ENSSTOG00000024837)	ENSSTOG00000015394 #23	PXK (ENSSTOG00000015398) #24	PDHB (ENSSTOG00000019553) #25	KCTD6 (ENSSTOG00000006260) #26	ACOX2 (ENSSTOG00000006269) #27	FAM107A (ENSSTOG00000006312) #28	FAM3D (ENSSTOG00000033685) #29	CFAP20DC (ENSSTOG00000014823) #30	ENSSTOG00000022099	FHIT (ENSSTOG00000029715)
Alpin marmot	MODERN SPECIES	38	UQCC5 (ENSMMMG00000013164)	NT5DC2 (ENSMMMG00000013168)	NISCH (ENSMMMG00000013700) #7	TNNC1 (ENSMMMG00000013754) #8	SEMA3G (ENSMMMG00000013763) #9	PHF7 (ENSMMMG00000013784) #10	BAP1 (ENSMMMG00000013842) #11	DNAH1 (ENSMMMG00000013863) #12	CAPN7 (ENSMMMG00000013959) #14	SH3BP5 (ENSMMMG00000013985) #15	METTL6 (ENSMMMG00000014000) #20	EAF1 (ENSMMMG00000014008) #19	COLQ (ENSMMMG00000014022) #18	HACL1 (ENSMMMG00000014084) #17	ENSMMMG00000014174	ABHD6 (ENSMMMG00000014184) #22	RPP14 (ENSMMMG00000014197) #23	HTD2 (ENSMMMG00000014203)	PXK (ENSMMMG00000014219) #24	PDHB (ENSMMMG00000014290) #25	KCTD6 (ENSMMMG00000014308) #26	ACOX2 (ENSMMMG00000014312) #27	FAM107A (ENSMMMG00000014323) #28	CFAP20DC (ENSMMMG00000014348) #30	ENSMMMG00000014363 #31	PTPRG (ENSMMMG00000014372) #32	C3orf14 (ENSMMMG00000014443)	FEZF2 (ENSMMMG00000014492)	ENSMMMG00000014517	SYNPR (ENSMMMG00000014720)	C3orf49 (ENSMMMG00000014737)
Eurasian red squirrel	MODERN SPECIES	7	NT5DC2 (ENSSVLG00005020258)	STAB1 (ENSSVLG00005020376)	NISCH (ENSSVLG00005020926) #7	TNNC1 (ENSSVLG00005020999) #8	SEMA3G (ENSSVLG00005021027) #9	PHF7 (ENSSVLG00005021215) #10	BAP1 (ENSSVLG00005021396) #11	DNAH1 (ENSSVLG00005021474) #12	CAPN7 (ENSSVLG00005022021) #14	SH3BP5 (ENSSVLG00005022124) #15	METTL6 (ENSSVLG00005022187) #20	EAF1 (ENSSVLG00005022245) #19	COLQ (ENSSVLG00005022341) #18	HACL1 (ENSSVLG00005022883) #17	ENSSVLG00005022958	ABHD6 (ENSSVLG00005022978) #22	ENSSVLG00005023010	RPP14 (ENSSVLG00005023037) #23	HTD2 (ENSSVLG00005023060)	PXK (ENSSVLG00005016921) #24	PDHB (ENSSVLG00005017770) #25	KCTD6 (ENSSVLG00005018061) #26	ACOX2 (ENSSVLG00005018118) #27	FAM107A (ENSSVLG00005018396) #28	FAM3D (ENSSVLG00005018585) #29	CFAP20DC (ENSSVLG00005018694) #30	FHIT (ENSSVLG00005018873)	ENSSVLG00005018937	PTPRG (ENSSVLG00005019016) #32	C3orf14 (ENSSVLG00005019094)	FEZF2 (ENSSVLG00005019149)