Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT00940000153092.a.a.d.f.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263559.A.f.d.a.a	ENSGT00940000156302	ENSGT01060000248528.b.kh.yb.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00860000135842 #23	ENSGT00940000165934 #24	ENSGT00390000012355.B.b #25	ENSGT00390000005869.a #26	ENSGT00730000111185.n.a #27	ENSGT00390000014273.b #28	ENSGT00940000158423.c #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #34	ENSGT00390000007258 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000182907.a.a.u	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263514.A.e.a.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00860000135842 #23	ENSGT00940000165934 #24	ENSGT00390000012355.B.b #25	ENSGT00390000005869.a #26	ENSGT00730000111185.n.a #27	ENSGT00390000014273.b #28	ENSGT00940000158423.c #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #34	ENSGT00390000007258 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT00940000153092.a.a.d.f.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263514.A.e.a.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00860000135842 #23	ENSGT00940000165934 #24	ENSGT00390000012355.B.b #25	ENSGT00390000005869.a #26	ENSGT00730000111185.n.a #27	ENSGT00390000014273.b #28	ENSGT00940000158423.c #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #34	ENSGT00390000007258 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Steppe mouse	MODERN SPECIES	3080													ENSMSIG00000021375 #19	ENSMSIG00000021411 #20	Hjv (ENSMSIG00000021438) #21	Txnip (ENSMSIG00000021449) #22	Gm16253 (ENSMSIG00000021486) #23	Polr3gl (ENSMSIG00000021490) #24	Ankrd34a (ENSMSIG00000021510) #25	Lix1l (ENSMSIG00000021515) #26	Rbm8a (ENSMSIG00000021530) #27	Pex11b (ENSMSIG00000021560) #28	Itga10 (ENSMSIG00000021607) #29	Ankrd35 (ENSMSIG00000021711) #30	Pias3 (ENSMSIG00000021736) #31	Nudt17 (ENSMSIG00000021817) #32	Polr3c (ENSMSIG00000021829) #33	ENSMSIG00000021857 #34	Cd160 (ENSMSIG00000021872) #35	Pdzk1 (ENSMSIG00000021897) #36	Gpr89 (ENSMSIG00000021948) #37
spretus	MODERN SPECIES	12	Sv2a (MGP_SPRETEiJ_G0026310)	Bola1 (MGP_SPRETEiJ_G0026311)	H2ac21 (MGP_SPRETEiJ_G0026312)	H2ac20 (MGP_SPRETEiJ_G0026313)	MGP_SPRETEiJ_G0026314	MGP_SPRETEiJ_G0026315	H2bc21 (MGP_SPRETEiJ_G0026316)	MGP_SPRETEiJ_G0026318	MGP_SPRETEiJ_G0026317	MGP_SPRETEiJ_G0026319	MGP_SPRETEiJ_G0026320	H2bc18 (MGP_SPRETEiJ_G0026321)	MGP_SPRETEiJ_G0026322	MGP_SPRETEiJ_G0026323	Hjv (MGP_SPRETEiJ_G0026324) #21	Txnip (MGP_SPRETEiJ_G0026325) #22	Gm16253 (MGP_SPRETEiJ_G0026326) #23	Polr3gl (MGP_SPRETEiJ_G0026327) #24	Ankrd34a (MGP_SPRETEiJ_G0026328) #25	MGP_SPRETEiJ_G0026329 #26	Rbm8a (MGP_SPRETEiJ_G0026330) #27	Pex11b (MGP_SPRETEiJ_G0026331) #28	MGP_SPRETEiJ_G0026332 ##29	Itga10 (MGP_SPRETEiJ_G0026333) #29	MGP_SPRETEiJ_G0026334	Pias3 (MGP_SPRETEiJ_G0026335) #31	Nudt17 (MGP_SPRETEiJ_G0026336) #32	Polr3c (MGP_SPRETEiJ_G0026337) #33	Rnf115 (MGP_SPRETEiJ_G0026338) #34	Cd160 (MGP_SPRETEiJ_G0026339) #35	Pdzk1 (MGP_SPRETEiJ_G0026340) #36
Mouse	MODERN SPECIES	12	Sf3b4 (ENSMUSG00000068856)	Sv2a (ENSMUSG00000038486)	Bola1 (ENSMUSG00000015943)	H2ac21 (ENSMUSG00000063689)	H2ac20 (ENSMUSG00000068855)	H2bc21 (ENSMUSG00000068854)	H3c15 (ENSMUSG00000081058)	H2ac19 (ENSMUSG00000063954)	H2ac18 (ENSMUSG00000064220)	H3c14 (ENSMUSG00000093769)	H4c14 (ENSMUSG00000091405)	H3c13 (ENSMUSG00000074403)	H2bc18 (ENSMUSG00000105827)	Fcgr1 (ENSMUSG00000015947)	Hjv (ENSMUSG00000038403) #21	Txnip (ENSMUSG00000038393) #22	Gm16253 (ENSMUSG00000087610) #23	Polr3gl (ENSMUSG00000028104) #24	Ankrd34a (ENSMUSG00000049097) #25	Lix1l (ENSMUSG00000049288) #26	Rbm8a (ENSMUSG00000038374) #27	Pex11b (ENSMUSG00000028102) #28	Itga10 (ENSMUSG00000090210) #29	Ankrd35 (ENSMUSG00000038354) #30	Pias3 (ENSMUSG00000028101) #31	Nudt17 (ENSMUSG00000028100) #32	Polr3c (ENSMUSG00000028099) #33	Rnf115 (ENSMUSG00000028098) #34	Cd160 (ENSMUSG00000038304) #35	Pdzk1 (ENSMUSG00000038298) #36	Gpr89 (ENSMUSG00000028096) #37
Ryukyu mouse	MODERN SPECIES	12	Otud7b (MGP_CAROLIEiJ_G0025363)	Mtmr11 (MGP_CAROLIEiJ_G0025364)	Sf3b4 (MGP_CAROLIEiJ_G0025365)	Sv2a (MGP_CAROLIEiJ_G0025366)	Bola1 (MGP_CAROLIEiJ_G0025367)	H2ac21 (MGP_CAROLIEiJ_G0025368)	H2ac20 (MGP_CAROLIEiJ_G0025369)	MGP_CAROLIEiJ_G0025370	H2bc21 (MGP_CAROLIEiJ_G0025371)	MGP_CAROLIEiJ_G0025372	MGP_CAROLIEiJ_G0025373	MGP_CAROLIEiJ_G0025374	H2bc18 (MGP_CAROLIEiJ_G0025375)	Fcgr1 (MGP_CAROLIEiJ_G0025376)	Hjv (MGP_CAROLIEiJ_G0025377) #21	Txnip (MGP_CAROLIEiJ_G0025378) #22	MGP_CAROLIEiJ_G0025379 #23	Polr3gl (MGP_CAROLIEiJ_G0025380) #24	Ankrd34a (MGP_CAROLIEiJ_G0025381) #25	Lix1l (MGP_CAROLIEiJ_G0025382) #26	Rbm8a (MGP_CAROLIEiJ_G0025383) #27	Pex11b (MGP_CAROLIEiJ_G0025384) #28	MGP_CAROLIEiJ_G0025385 ##29	Itga10 (MGP_CAROLIEiJ_G0025386) #29	MGP_CAROLIEiJ_G0025387	Pias3 (MGP_CAROLIEiJ_G0025388) #31	Nudt17 (MGP_CAROLIEiJ_G0025389) #32	Polr3c (MGP_CAROLIEiJ_G0025390) #33	Rnf115 (MGP_CAROLIEiJ_G0025391) #34	Cd160 (MGP_CAROLIEiJ_G0025392) #35	Pdzk1 (MGP_CAROLIEiJ_G0025393) #36