Tetrapoda	ANCESTRAL SPECIES	190						ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165856
Amniota	ANCESTRAL SPECIES	28	ENSGT00940000171776	ENSGT00500000045038	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00950000185785	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341
Mammalia	ANCESTRAL SPECIES	25	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00940000164936	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT01030000234540.B.b	ENSGT00940000160963	ENSGT00940000162271	ENSGT00940000158350	ENSGT00950000185615
Theria	ANCESTRAL SPECIES	3	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Eutheria	ANCESTRAL SPECIES		ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.b	ENSGT01020000230360.c.b.a.b.b.d	ENSGT01100000263474.a.a.d	ENSGT01100000263474.a.a.c.b	ENSGT00940000161385	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.A	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Euarchontoglires	ANCESTRAL SPECIES		ENSGT01100000263514.A.e.a.a	ENSGT00940000155501.a.b	ENSGT00990000203553.c.b	ENSGT01060000248528.b.kh.xb.b.a	ENSGT01100000263474.a.b.b.e.a.a.a.a	ENSGT00940000153118.db.a.b	ENSGT01060000248528.b.kh.yb.a.a	ENSGT01100000263506.a.f.b	ENSGT01060000248528.b.kh.yb.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.B	ENSGT00940000156302	ENSGT01100000263575.A	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Glires	ANCESTRAL SPECIES		ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.B	ENSGT00940000156302	ENSGT01100000263575.A	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Rodentia	ANCESTRAL SPECIES		ENSGT01100000263575.B.u	ENSGT01100000263506.a.e.a.a.a.a.a.r.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.a.s	ENSGT00940000153125.E.c.b	ENSGT01100000263514.A.e.a.b.a.b.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.b	ENSGT00940000162950	ENSGT01020000230360.c.b.a.b.b.d	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a	ENSGT00940000163525	ENSGT01060000248528.b.jh.a.b	ENSGT01100000263559.A.f.d.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT00940000156302	ENSGT01100000263575.A	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263559.B	ENSGT00940000163082	ENSGT00940000160426	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT00940000156302	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000264175 #23	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Hystricomorpha_a	ANCESTRAL SPECIES	14															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000264175 #23	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Hystricomorpha_b	ANCESTRAL SPECIES	6															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000264175 #23	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Degu	MODERN SPECIES	371															HJV (ENSODEG00000000544) #21	TXNIP (ENSODEG00000000474) #22	ENSODEG00000000270 #23	ANKRD34A (ENSODEG00000018558) #24	LIX1L (ENSODEG00000000194) #25	ENSODEG00000000114 #26	ENSODEG00000000986 #27	PEX11B (ENSODEG00000000939) #28	ITGA10 (ENSODEG00000000677) #29	ANKRD35 (ENSODEG00000000594) #30	PIAS3 (ENSODEG00000000344) #31	NUDT17 (ENSODEG00000000612) #32	POLR3C (ENSODEG00000000304) #33	ENSODEG00000000255 #34	RNF115 (ENSODEG00000000231) #35	ENSODEG00000000182 #36	ENSODEG00000000161 #37
Long-tailed chinchilla	MODERN SPECIES	275															HJV (ENSCLAG00000001025) #21	TXNIP (ENSCLAG00000000404) #22	ENSCLAG00000000412 #23	ANKRD34A (ENSCLAG00000000448) #24	LIX1L (ENSCLAG00000000519) #25	RBM8A (ENSCLAG00000000547) #26	PEX11B (ENSCLAG00000000635) #28	ITGA10 (ENSCLAG00000000814) #29	ANKRD35 (ENSCLAG00000000443) #30	PIAS3 (ENSCLAG00000000625) #31	NUDT17 (ENSCLAG00000001048) #32	POLR3C (ENSCLAG00000001652) #33	RNF115 (ENSCLAG00000000561) #35	PDZK1 (ENSCLAG00000000212) #36	ENSCLAG00000000463 #37	GJA8 (ENSCLAG00000017420)	GJA5 (ENSCLAG00000000616)
Guinea pig	MODERN SPECIES	2	ODF2L (ENSCPOG00000004605)	CLCA2 (ENSCPOG00000014944)	CLCA1 (ENSCPOG00000014947)	ENSCPOG00000014950	ENSCPOG00000001098	ENSCPOG00000039214	ENSCPOG00000015253	SH3GLB1 (ENSCPOG00000015176)	SELENOF (ENSCPOG00000037223)	HS2ST1 (ENSCPOG00000005010)	LMO4 (ENSCPOG00000012113)	PKN2 (ENSCPOG00000000537)	GTF2B (ENSCPOG00000014028)	KYAT3 (ENSCPOG00000009695)	HJV (ENSCPOG00000010745) #21	TXNIP (ENSCPOG00000027326) #22	ENSCPOG00000030717	ANKRD34A (ENSCPOG00000013792) #24	LIX1L (ENSCPOG00000013799) #25	RBM8A (ENSCPOG00000022453) #26	PEX11B (ENSCPOG00000002755) #28	ITGA10 (ENSCPOG00000002756) #29	ANKRD35 (ENSCPOG00000002766) #30	PIAS3 (ENSCPOG00000002771) #31	POLR3C (ENSCPOG00000004654) #33	RNF115 (ENSCPOG00000024517) #35	PDZK1 (ENSCPOG00000005364) #36	ENSCPOG00000008390 #37	GJA8 (ENSCPOG00000019781)	GJA5 (ENSCPOG00000008219)	ACP6 (ENSCPOG00000012209)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	10	PLEKHO1 (ENSHGLG00000046314)	VPS45 (ENSHGLG00000018897)	OTUD7B (ENSHGLG00000019136)	MTMR11 (ENSHGLG00000013532)	SF3B4 (ENSHGLG00000012360)	SV2A (ENSHGLG00000011320)	BOLA1 (ENSHGLG00000033803)	ENSHGLG00000039058	ENSHGLG00000015936	ENSHGLG00000036146	HIST1H4I (ENSHGLG00000040309)	ENSHGLG00000040039	ENSHGLG00000038422	ENSHGLG00000009060	ENSHGLG00000035132 #21	ENSHGLG00000005199 #22	ANKRD34A (ENSHGLG00000009270) #24	ENSHGLG00000005879 #23	LIX1L (ENSHGLG00000008928) #25	RBM8A (ENSHGLG00000033593) #26	ENSHGLG00000006230 #27	PEX11B (ENSHGLG00000005185) #28	ITGA10 (ENSHGLG00000010384) #29	ANKRD35 (ENSHGLG00000008812) #30	PIAS3 (ENSHGLG00000005009) #31	NUDT17 (ENSHGLG00000034982) #32	POLR3C (ENSHGLG00000014978) #33	ENSHGLG00000014613 #35	ENSHGLG00000041766	ENSHGLG00000049549	ENSHGLG00000009553 #36
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000050069	FSIP1 (ENSHGLG00000015365)	THBS1 (ENSHGLG00000016132)	ENSHGLG00000018013	ENSHGLG00000010006	ENSHGLG00000020525	ENSHGLG00000012540	RASGRP1 (ENSHGLG00000015594)	FAM98B (ENSHGLG00000034339)	SPRED1 (ENSHGLG00000049493)	ENSHGLG00000034326	ENSHGLG00000018548	ENSHGLG00000033453	ENSHGLG00000046519	ENSHGLG00000033130	ENSHGLG00000015146 #22	ENSHGLG00000012060	ENSHGLG00000044260	ZNF770 (ENSHGLG00000048525)	AQR (ENSHGLG00000013912)	ENSHGLG00000043341	ENSHGLG00000018281	ENSHGLG00000014742	ENSHGLG00000039929	ENSHGLG00000018587	ENSHGLG00000006535	SCG5 (ENSHGLG00000007916)	GREM1 (ENSHGLG00000005364)	ENSHGLG00000041336	FMN1 (ENSHGLG00000014841)	ENSHGLG00000035816
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000156893	ENSGT00950000182907.a.a.i.b	ENSGT00530000063760.b	ENSGT00550000075028.z	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Marmotini	ANCESTRAL SPECIES	99															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000002799 #33	ENSGT01090000260200.e	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Marmotini_b	ANCESTRAL SPECIES	186															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000002799 #33	ENSGT01090000260200.e	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Arctic ground squirrel	MODERN SPECIES	810															HJV (ENSUPAG00010010065) #21	TXNIP (ENSUPAG00010010057) #22	ENSUPAG00010010032	ANKRD34A (ENSUPAG00010010029) #24	LIX1L (ENSUPAG00010010014) #25	RBM8A (ENSUPAG00010009994) #26	ENSUPAG00010009988 #27	PEX11B (ENSUPAG00010009966) #28	ITGA10 (ENSUPAG00010009892) #29	ANKRD35 (ENSUPAG00010009874) #30	PIAS3 (ENSUPAG00010009842) #31	POLR3C (ENSUPAG00010009818) #33	ENSUPAG00010009816	ENSUPAG00010009804 #35	CD160 (ENSUPAG00010009794)
Squirrel	MODERN SPECIES	466															HJV (ENSSTOG00000013901) #21	TXNIP (ENSSTOG00000013904) #22	POLR3GL (ENSSTOG00000013914)	ANKRD34A (ENSSTOG00000022513) #24	LIX1L (ENSSTOG00000020689) #25	RBM8A (ENSSTOG00000013917) #26	ENSSTOG00000013923	PEX11B (ENSSTOG00000030389) #28	ITGA10 (ENSSTOG00000013934) #29	ANKRD35 (ENSSTOG00000023029) #30	PIAS3 (ENSSTOG00000006105) #31	POLR3C (ENSSTOG00000014601) #33	RNF115 (ENSSTOG00000013568) #35	ENSSTOG00000010189 #37	GJA8 (ENSSTOG00000022242)	ACP6 (ENSSTOG00000000856)	BCL9 (ENSSTOG00000000850)
Alpin marmot	MODERN SPECIES	138															HJV (ENSMMMG00000015524) #21	TXNIP (ENSMMMG00000015514) #22	ENSMMMG00000015500	ANKRD34A (ENSMMMG00000015494) #24	LIX1L (ENSMMMG00000015481) #25	RBM8A (ENSMMMG00000015472) #26	ENSMMMG00000015463	PEX11B (ENSMMMG00000015439) #28	ITGA10 (ENSMMMG00000015372) #29	ANKRD35 (ENSMMMG00000015361) #30	PIAS3 (ENSMMMG00000015314) #31	POLR3C (ENSMMMG00000015297) #33	ENSMMMG00000015296	RNF115 (ENSMMMG00000015274) #35	CD160 (ENSMMMG00000015256)	PDZK1 (ENSMMMG00000015180) #36	ENSMMMG00000015172 #37
Eurasian red squirrel	MODERN SPECIES		SV2A (ENSSVLG00005000231)	BOLA1 (ENSSVLG00005000149)	H2AC21 (ENSSVLG00005000146)	H2AC20 (ENSSVLG00005000144)	H2BC21 (ENSSVLG00005000140)	H2AC19 (ENSSVLG00005000135)	ENSSVLG00005000132	ENSSVLG00005000127	ENSSVLG00005000124	ENSSVLG00005000095	ENSSVLG00005000088	ENSSVLG00005004594	H2BC18 (ENSSVLG00005004581)	FCGR1A (ENSSVLG00005004523)	HJV (ENSSVLG00005004426) #21	TXNIP (ENSSVLG00005004403) #22	POLR3GL (ENSSVLG00005004386)	ANKRD34A (ENSSVLG00005004364) #24	LIX1L (ENSSVLG00005004342) #25	RBM8A (ENSSVLG00005004314) #26	ENSSVLG00005004296	PEX11B (ENSSVLG00005004265) #28	ITGA10 (ENSSVLG00005004180) #29	ANKRD35 (ENSSVLG00005004120) #30	PIAS3 (ENSSVLG00005004062) #31	NUDT17 (ENSSVLG00005004030) #32	POLR3C (ENSSVLG00005004005) #33	RNF115 (ENSSVLG00005003979) #35	CD160 (ENSSVLG00005003958)	ENSSVLG00005003919 #36	ENSSVLG00005003882 #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263506.a.e.a.a.a.a.a.r.b	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01060000248528.b.kh.xb.a.b	ENSGT01100000263559.A.f.d.a.a	ENSGT00940000156302	ENSGT01060000248528.b.kh.yb.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379.c	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Kangaroo rat	MODERN SPECIES	358	ENSDORG00000005618	ENSDORG00000005617	Ephx4 (ENSDORG00000006679)	Brdt (ENSDORG00000016543)	Tgfbr3 (ENSDORG00000009482)	Cdc7 (ENSDORG00000014664)	Hfm1 (ENSDORG00000014661)	Zfp644 (ENSDORG00000026900)	Barhl2 (ENSDORG00000011499)	Zfp326 (ENSDORG00000014049)	ENSDORG00000000376	Lrrc8c (ENSDORG00000026385)	Lrrc8b (ENSDORG00000010331)	ENSDORG00000023821	Hjv (ENSDORG00000004311) #21	Txnip (ENSDORG00000014260) #22	ENSDORG00000014259	Ankrd34a (ENSDORG00000027982) #24	Lix1l (ENSDORG00000004221) #25	ENSDORG00000027340 #26	ENSDORG00000004224	Pex11b (ENSDORG00000023422) #28	Itga10 (ENSDORG00000008520) #29	Ankrd35 (ENSDORG00000001803) #30	Pias3 (ENSDORG00000013427) #31	Polr3c (ENSDORG00000013430) #33	Rnf115 (ENSDORG00000007839) #35	ENSDORG00000008399	Gpr89 (ENSDORG00000023702) #37	Gja8 (ENSDORG00000000930)	ENSDORG00000016000
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263506.a.e.a.a.a.a.a.r.b	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01060000248528.b.kh.xb.a.b	ENSGT01100000263559.A.f.d.a.a	ENSGT00940000156302	ENSGT01060000248528.b.kh.yb.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Muroidea	ANCESTRAL SPECIES	6	ENSGT01100000263575.B.u	ENSGT01100000263506.a.e.a.a.a.a.a.r.b	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01060000248528.b.kh.xb.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.b	ENSGT00940000153092.a.a.c.a.a.g	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a	ENSGT00940000163525	ENSGT01060000248528.b.kh.xb.b.b	ENSGT01060000248528.b.jh.a.b	ENSGT01100000263559.A.f.d.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01060000248528.b.kh.xb.a.b	ENSGT00940000153092.a.a.c.a.a.f.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00950000182907.a.a.u	ENSGT00950000182907.a.a.t.b	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00390000018360	ENSGT00390000003103	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00950000182907.a.a.t.b	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT01100000263506.a.e.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Chinese hamster chok1gshd	MODERN SPECIES	66	Sf3b4 (ENSCGRG00001003590)	Sv2a (ENSCGRG00001020508)	Bola1 (ENSCGRG00001011268)	H2ac21 (ENSCGRG00001011919)	ENSCGRG00001009965	ENSCGRG00001011428	ENSCGRG00001010190	ENSCGRG00001010788	ENSCGRG00001009035	ENSCGRG00001009755	ENSCGRG00001009153	ENSCGRG00001009937	H2bc18 (ENSCGRG00001006172)	ENSCGRG00001019293	Hjv (ENSCGRG00001009674) #21	Txnip (ENSCGRG00001010170) #22	Polr3gl (ENSCGRG00001023956)	Ankrd34a (ENSCGRG00001006698) #24	Lix1l (ENSCGRG00001012733) #25	ENSCGRG00001002681 #26	Pex11b (ENSCGRG00001007975) #28	Itga10 (ENSCGRG00001010836) #29	Ankrd35 (ENSCGRG00001015237) #30	Pias3 (ENSCGRG00001023567) #31	Nudt17 (ENSCGRG00001018476) #32	Polr3c (ENSCGRG00001005471) #33	Rnf115 (ENSCGRG00001002010) #35	Cd160 (ENSCGRG00001006376)	Pdzk1 (ENSCGRG00001017392) #36	ENSCGRG00001005229	Gpr89 (ENSCGRG00001010733) #37
Golden Hamster	MODERN SPECIES	782	BC028528 (ENSMAUG00000009366)	Aph1a (ENSMAUG00000009007)	Car14 (ENSMAUG00000019851)	Anp32e (ENSMAUG00000011419)	Plekho1 (ENSMAUG00000017313)	Vps45 (ENSMAUG00000020648)	Otud7b (ENSMAUG00000017029)	Mtmr11 (ENSMAUG00000017521)	Sf3b4 (ENSMAUG00000015266)	Sv2a (ENSMAUG00000019595)	Bola1 (ENSMAUG00000020828)	ENSMAUG00000005836	ENSMAUG00000005554	H2bc18 (ENSMAUG00000005217)	Hjv (ENSMAUG00000014664) #21	Txnip (ENSMAUG00000012817) #22	ENSMAUG00000011743	ENSMAUG00000007964	Ankrd34a (ENSMAUG00000016847) #24	Lix1l (ENSMAUG00000018322) #25	ENSMAUG00000016783 #26	Pex11b (ENSMAUG00000013080) #28	Itga10 (ENSMAUG00000005986) #29	Ankrd35 (ENSMAUG00000016099) #30	ENSMAUG00000018348 #31	ENSMAUG00000001454 #33	Rnf115 (ENSMAUG00000010619) #35	Cd160 (ENSMAUG00000020080)	Pdzk1 (ENSMAUG00000009842) #36	Gpr89 (ENSMAUG00000010582) #37	Gja8 (ENSMAUG00000004556)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263559.B	ENSGT00940000156302	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Prairie vole	MODERN SPECIES	8	ENSMOCG00000001232	ENSMOCG00000008106	Psmb4 (ENSMOCG00000007356)	Pogz (ENSMOCG00000019799)	ENSMOCG00000006627	Tuft1 (ENSMOCG00000015351)	Snx27 (ENSMOCG00000001014)	Celf3 (ENSMOCG00000001878)	Mrpl9 (ENSMOCG00000002992)	Oaz3 (ENSMOCG00000002831)	ENSMOCG00000002113	Lingo4 (ENSMOCG00000002527)	Rorc (ENSMOCG00000004458)	Them5 (ENSMOCG00000002275)	Hjv (ENSMOCG00000013781) #21	Txnip (ENSMOCG00000015375) #22	Polr3gl (ENSMOCG00000001317)	Ankrd34a (ENSMOCG00000003145) #24	Lix1l (ENSMOCG00000015984) #25	ENSMOCG00000017782 #26	Pex11b (ENSMOCG00000018183) #28	Itga10 (ENSMOCG00000022662) #29	Ankrd35 (ENSMOCG00000012567) #30	Pias3 (ENSMOCG00000019927) #31	Nudt17 (ENSMOCG00000001212) #32	Polr3c (ENSMOCG00000000997) #33	Rnf115 (ENSMOCG00000019619) #35	Cd160 (ENSMOCG00000021710)	Pdzk1 (ENSMOCG00000004696) #36	Gpr89 (ENSMOCG00000005315) #37	Gja8 (ENSMOCG00000009290)
Northern American deer mouse	MODERN SPECIES	19	Mtmr11 (ENSPEMG00000014402)	Sf3b4 (ENSPEMG00000017568)	Sv2a (ENSPEMG00000008887)	Bola1 (ENSPEMG00000008051)	H2ac21 (ENSPEMG00000025720)	H2ac20 (ENSPEMG00000008763)	H2bc21 (ENSPEMG00000026085)	ENSPEMG00000026231	ENSPEMG00000024811	ENSPEMG00000030515	ENSPEMG00000030275	H2bc18 (ENSPEMG00000026346)	Fcgr1 (ENSPEMG00000010092)	ENSPEMG00000029146	Hjv (ENSPEMG00000016694) #21	Txnip (ENSPEMG00000010784) #22	Polr3gl (ENSPEMG00000014489)	Ankrd34a (ENSPEMG00000018493) #24	Lix1l (ENSPEMG00000009747) #25	ENSPEMG00000018117 #26	Pex11b (ENSPEMG00000030984) #28	Itga10 (ENSPEMG00000009215) #29	Ankrd35 (ENSPEMG00000005629) #30	Pias3 (ENSPEMG00000003331) #31	Nudt17 (ENSPEMG00000018269) #32	Polr3c (ENSPEMG00000016322) #33	Rnf115 (ENSPEMG00000017239) #35	Cd160 (ENSPEMG00000013087)	Gpr89 (ENSPEMG00000000972) #37	Gja8 (ENSPEMG00000006825)	ENSPEMG00000026655
Murinae	ANCESTRAL SPECIES	5	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01060000248528.b.kh.xb.a.b	ENSGT01100000263559.A.f.d.a.a	ENSGT00940000156302	ENSGT01060000248528.b.kh.yb.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Mus	ANCESTRAL SPECIES	7	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01060000248528.b.kh.xb.a.b	ENSGT01100000263559.A.f.d.a.a	ENSGT00940000156302	ENSGT01060000248528.b.kh.yb.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00860000135842	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423.c #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT00940000153092.a.a.d.f.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263559.A.f.d.a.a	ENSGT00940000156302	ENSGT01060000248528.b.kh.yb.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00860000135842	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185.n.a #26	ENSGT00390000014273.b #28	ENSGT00940000158423.c #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000182907.a.a.u	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263514.A.e.a.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00860000135842	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185.n.a #26	ENSGT00390000014273.b #28	ENSGT00940000158423.c #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Mouse	MODERN SPECIES	12	Sf3b4 (ENSMUSG00000068856)	Sv2a (ENSMUSG00000038486)	Bola1 (ENSMUSG00000015943)	H2ac21 (ENSMUSG00000063689)	H2ac20 (ENSMUSG00000068855)	H2bc21 (ENSMUSG00000068854)	H3c15 (ENSMUSG00000081058)	H2ac19 (ENSMUSG00000063954)	H2ac18 (ENSMUSG00000064220)	H3c14 (ENSMUSG00000093769)	H4c14 (ENSMUSG00000091405)	H3c13 (ENSMUSG00000074403)	H2bc18 (ENSMUSG00000105827)	Fcgr1 (ENSMUSG00000015947)	Hjv (ENSMUSG00000038403) #21	Txnip (ENSMUSG00000038393) #22	Gm16253 (ENSMUSG00000087610)	Polr3gl (ENSMUSG00000028104)	Ankrd34a (ENSMUSG00000049097) #24	Lix1l (ENSMUSG00000049288) #25	Rbm8a (ENSMUSG00000038374) #26	Pex11b (ENSMUSG00000028102) #28	Itga10 (ENSMUSG00000090210) #29	Ankrd35 (ENSMUSG00000038354) #30	Pias3 (ENSMUSG00000028101) #31	Nudt17 (ENSMUSG00000028100) #32	Polr3c (ENSMUSG00000028099) #33	Rnf115 (ENSMUSG00000028098) #35	Cd160 (ENSMUSG00000038304)	Pdzk1 (ENSMUSG00000038298) #36	Gpr89 (ENSMUSG00000028096) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT00940000153092.a.a.d.f.a	ENSGT01100000263506.a.e.a.a.a.b.b.b	ENSGT01100000263514.A.e.a.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00860000135842	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185.n.a #26	ENSGT00390000014273.b #28	ENSGT00940000158423.c #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Steppe mouse	MODERN SPECIES	3080													ENSMSIG00000021375	ENSMSIG00000021411	Hjv (ENSMSIG00000021438) #21	Txnip (ENSMSIG00000021449) #22	Gm16253 (ENSMSIG00000021486)	Polr3gl (ENSMSIG00000021490)	Ankrd34a (ENSMSIG00000021510) #24	Lix1l (ENSMSIG00000021515) #25	Rbm8a (ENSMSIG00000021530) #26	Pex11b (ENSMSIG00000021560) #28	Itga10 (ENSMSIG00000021607) #29	Ankrd35 (ENSMSIG00000021711) #30	Pias3 (ENSMSIG00000021736) #31	Nudt17 (ENSMSIG00000021817) #32	Polr3c (ENSMSIG00000021829) #33	ENSMSIG00000021857 #35	Cd160 (ENSMSIG00000021872)	Pdzk1 (ENSMSIG00000021897) #36	Gpr89 (ENSMSIG00000021948) #37
spretus	MODERN SPECIES	12	Sv2a (MGP_SPRETEiJ_G0026310)	Bola1 (MGP_SPRETEiJ_G0026311)	H2ac21 (MGP_SPRETEiJ_G0026312)	H2ac20 (MGP_SPRETEiJ_G0026313)	MGP_SPRETEiJ_G0026314	MGP_SPRETEiJ_G0026315	H2bc21 (MGP_SPRETEiJ_G0026316)	MGP_SPRETEiJ_G0026318	MGP_SPRETEiJ_G0026317	MGP_SPRETEiJ_G0026319	MGP_SPRETEiJ_G0026320	H2bc18 (MGP_SPRETEiJ_G0026321)	MGP_SPRETEiJ_G0026322	MGP_SPRETEiJ_G0026323	Hjv (MGP_SPRETEiJ_G0026324) #21	Txnip (MGP_SPRETEiJ_G0026325) #22	Gm16253 (MGP_SPRETEiJ_G0026326)	Polr3gl (MGP_SPRETEiJ_G0026327)	Ankrd34a (MGP_SPRETEiJ_G0026328) #24	MGP_SPRETEiJ_G0026329 #25	Rbm8a (MGP_SPRETEiJ_G0026330) #26	Pex11b (MGP_SPRETEiJ_G0026331) #28	MGP_SPRETEiJ_G0026332 #29	Itga10 (MGP_SPRETEiJ_G0026333) #29	MGP_SPRETEiJ_G0026334	Pias3 (MGP_SPRETEiJ_G0026335) #31	Nudt17 (MGP_SPRETEiJ_G0026336) #32	Polr3c (MGP_SPRETEiJ_G0026337) #33	Rnf115 (MGP_SPRETEiJ_G0026338) #35	Cd160 (MGP_SPRETEiJ_G0026339)	Pdzk1 (MGP_SPRETEiJ_G0026340) #36
Ryukyu mouse	MODERN SPECIES	12	Otud7b (MGP_CAROLIEiJ_G0025363)	Mtmr11 (MGP_CAROLIEiJ_G0025364)	Sf3b4 (MGP_CAROLIEiJ_G0025365)	Sv2a (MGP_CAROLIEiJ_G0025366)	Bola1 (MGP_CAROLIEiJ_G0025367)	H2ac21 (MGP_CAROLIEiJ_G0025368)	H2ac20 (MGP_CAROLIEiJ_G0025369)	MGP_CAROLIEiJ_G0025370	H2bc21 (MGP_CAROLIEiJ_G0025371)	MGP_CAROLIEiJ_G0025372	MGP_CAROLIEiJ_G0025373	MGP_CAROLIEiJ_G0025374	H2bc18 (MGP_CAROLIEiJ_G0025375)	Fcgr1 (MGP_CAROLIEiJ_G0025376)	Hjv (MGP_CAROLIEiJ_G0025377) #21	Txnip (MGP_CAROLIEiJ_G0025378) #22	MGP_CAROLIEiJ_G0025379	Polr3gl (MGP_CAROLIEiJ_G0025380)	Ankrd34a (MGP_CAROLIEiJ_G0025381) #24	Lix1l (MGP_CAROLIEiJ_G0025382) #25	Rbm8a (MGP_CAROLIEiJ_G0025383) #26	Pex11b (MGP_CAROLIEiJ_G0025384) #28	MGP_CAROLIEiJ_G0025385 #29	Itga10 (MGP_CAROLIEiJ_G0025386) #29	MGP_CAROLIEiJ_G0025387	Pias3 (MGP_CAROLIEiJ_G0025388) #31	Nudt17 (MGP_CAROLIEiJ_G0025389) #32	Polr3c (MGP_CAROLIEiJ_G0025390) #33	Rnf115 (MGP_CAROLIEiJ_G0025391) #35	Cd160 (MGP_CAROLIEiJ_G0025392)	Pdzk1 (MGP_CAROLIEiJ_G0025393) #36
Shrew mouse	MODERN SPECIES	17	Mtmr11 (MGP_PahariEiJ_G0026808)	Sf3b4 (MGP_PahariEiJ_G0026809)	Sv2a (MGP_PahariEiJ_G0026810)	Bola1 (MGP_PahariEiJ_G0026811)	H2ac21 (MGP_PahariEiJ_G0026812)	H2ac20 (MGP_PahariEiJ_G0026813)	MGP_PahariEiJ_G0026815	MGP_PahariEiJ_G0026814	H2bc21 (MGP_PahariEiJ_G0026816)	MGP_PahariEiJ_G0026817	MGP_PahariEiJ_G0026818	MGP_PahariEiJ_G0026819	H2bc18 (MGP_PahariEiJ_G0026820)	Fcgr1 (MGP_PahariEiJ_G0026821)	Hjv (MGP_PahariEiJ_G0026822) #21	Txnip (MGP_PahariEiJ_G0026823) #22	MGP_PahariEiJ_G0026824	Polr3gl (MGP_PahariEiJ_G0026825)	Ankrd34a (MGP_PahariEiJ_G0026826) #24	Lix1l (MGP_PahariEiJ_G0026827) #25	MGP_PahariEiJ_G0026828 #26	Pex11b (MGP_PahariEiJ_G0026829) #28	MGP_PahariEiJ_G0026830 #29	Itga10 (MGP_PahariEiJ_G0026831) #29	Ankrd35 (MGP_PahariEiJ_G0026832) #30	Pias3 (MGP_PahariEiJ_G0026833) #31	Nudt17 (MGP_PahariEiJ_G0026834) #32	Polr3c (MGP_PahariEiJ_G0026835) #33	Rnf115 (MGP_PahariEiJ_G0026836) #35	Cd160 (MGP_PahariEiJ_G0026837)	Pdzk1 (MGP_PahariEiJ_G0026838) #36
Rat	MODERN SPECIES	11	Sf3b4 (ENSRNOG00000021181)	Sv2a (ENSRNOG00000021182)	Bola1 (ENSRNOG00000021185)	ENSRNOG00000062927	LOC102549173 (ENSRNOG00000068046)	LOC102549173 (ENSRNOG00000065886)	Hist1h4b (ENSRNOG00000032224)	Hist2h3c2 (ENSRNOG00000063016)	H2bc18 (ENSRNOG00000070591)	Fcgr1a (ENSRNOG00000021199)	ENSRNOG00000069676	AABR07012587.1 (ENSRNOG00000002223)	AABR07012588.1 (ENSRNOG00000059842)	Hjv (ENSRNOG00000021200) #21	AABR07012592.1 (ENSRNOG00000037223)	Txnip (ENSRNOG00000021201) #22	Polr3gl (ENSRNOG00000021209)	ENSRNOG00000069895	Ankrd34a (ENSRNOG00000033741) #24	Lix1l (ENSRNOG00000021213) #25	Rbm8a (ENSRNOG00000021215) #26	Pex11b (ENSRNOG00000021216) #28	Itga10 (ENSRNOG00000021217) #29	Ankrd35 (ENSRNOG00000025108) #30	Pias3 (ENSRNOG00000021218) #31	Nudt17 (ENSRNOG00000037217) #32	Polr3c (ENSRNOG00000033560) #33	Rnf115 (ENSRNOG00000000098) #35	Cd160 (ENSRNOG00000000097)	Pdzk1 (ENSRNOG00000000096) #36	Gpr89b (ENSRNOG00000000095) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	566															Hjv (ENSNGAG00000022980) #21	Txnip (ENSNGAG00000005485) #22	ENSNGAG00000021570	Ankrd34a (ENSNGAG00000023908) #24	Lix1l (ENSNGAG00000022975) #25	ENSNGAG00000016038 #26	Pex11b (ENSNGAG00000018663) #28	Itga10 (ENSNGAG00000012531) #29	Ankrd35 (ENSNGAG00000017275) #30	Pias3 (ENSNGAG00000003830) #31	Nudt17 (ENSNGAG00000014352) #32	Polr3c (ENSNGAG00000013090) #33	Rnf115 (ENSNGAG00000009988) #35	ENSNGAG00000022883	Gpr89 (ENSNGAG00000020501) #37	Gja8 (ENSNGAG00000016598)	Gja5 (ENSNGAG00000014986)
Lesser Egyptian jerboa	MODERN SPECIES	69	ENSJJAG00000023972	ENSJJAG00000011564	Il13ra2 (ENSJJAG00000022912)	Lrch2 (ENSJJAG00000009205)	Pls3 (ENSJJAG00000022405)	Agtr2 (ENSJJAG00000011582)	Vps45 (ENSJJAG00000019652)	Otud7b (ENSJJAG00000023034)	Mtmr11 (ENSJJAG00000013193)	Sf3b4 (ENSJJAG00000022500)	Sv2a (ENSJJAG00000019928)	Bola1 (ENSJJAG00000018323)	ENSJJAG00000014139	ENSJJAG00000020529	Hjv (ENSJJAG00000012429) #21	Txnip (ENSJJAG00000013701) #22	ENSJJAG00000019638	Ankrd34a (ENSJJAG00000011251) #24	Lix1l (ENSJJAG00000017071) #25	ENSJJAG00000009488 #26	Pex11b (ENSJJAG00000003343) #28	Itga10 (ENSJJAG00000023352) #29	Ankrd35 (ENSJJAG00000001517) #30	Pias3 (ENSJJAG00000020778) #31	Nudt17 (ENSJJAG00000018335) #32	Polr3c (ENSJJAG00000011447) #33	Rnf115 (ENSJJAG00000007841) #35	ENSJJAG00000000868 #36	Gpr89 (ENSJJAG00000020361) #37	Gja8 (ENSJJAG00000013389)	Gja5 (ENSJJAG00000009810)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.B	ENSGT00940000156302	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Rabbit	MODERN SPECIES	4	ENSOCUG00000037254	H2BC21 (ENSOCUG00000023535)	ENSOCUG00000023564	ENSOCUG00000025918	ENSOCUG00000027315	ENSOCUG00000031190	ENSOCUG00000023811	H2BC18 (ENSOCUG00000024543)	ENSOCUG00000003403	ENSOCUG00000038567	ENSOCUG00000022427	ENSOCUG00000021718	ENSOCUG00000023196	HJV (ENSOCUG00000006209) #21	ENSOCUG00000007257	TXNIP (ENSOCUG00000003010) #22	POLR3GL (ENSOCUG00000006212)	ANKRD34A (ENSOCUG00000029638) #24	LIX1L (ENSOCUG00000003018) #25	RBM8A (ENSOCUG00000025693) #26	PEX11B (ENSOCUG00000003029) #28	ITGA10 (ENSOCUG00000003032) #29	ENSOCUG00000028209	ANKRD35 (ENSOCUG00000002128) #30	PIAS3 (ENSOCUG00000026198) #31	POLR3C (ENSOCUG00000003050) #33	ENSOCUG00000003055 #35	ENSOCUG00000030350	ENSOCUG00000024935 #36	ENSOCUG00000002960 #37	ENSOCUG00000030987
Pika	MODERN SPECIES	2309															ENSOPRG00000013238 #21	TXNIP (ENSOPRG00000013247) #22	ENSOPRG00000013268	ANKRD34A (ENSOPRG00000013282) #24	LIX1L (ENSOPRG00000013287) #25	RBM8A (ENSOPRG00000013316) #26	PEX11B (ENSOPRG00000013325) #28	ITGA10 (ENSOPRG00000013336) #29	ANKRD35 (ENSOPRG00000013395) #30
Tree shrew	MODERN SPECIES	719																TXNIP (ENSTBEG00000014689) #22	ENSTBEG00000014721	ANKRD34A (ENSTBEG00000014832) #24	LIX1L (ENSTBEG00000014860) #25	RBM8A (ENSTBEG00000014947) #26	ENSTBEG00000014981 #27	PEX11B (ENSTBEG00000015030) #28	ENSTBEG00000015039	ITGA10 (ENSTBEG00000015073) #29	PIAS3 (ENSTBEG00000015429) #31	NUDT17 (ENSTBEG00000015448) #32	POLR3C (ENSTBEG00000015610) #33
Primates	ANCESTRAL SPECIES	7	ENSGT01100000263474.a.b.b.e.a.a.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a	ENSGT01060000248528.b.jh.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263575.A	ENSGT00940000156302	ENSGT01100000263559.B	ENSGT01100000263506.a.e.a.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT00940000153125.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Lemuriformes	ANCESTRAL SPECIES																ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Mouse lemur	MODERN SPECIES	11	ENSMICG00000035294	OTUD7B (ENSMICG00000047179)	MTMR11 (ENSMICG00000000298)	SF3B4 (ENSMICG00000044961)	SV2A (ENSMICG00000000293)	H2BC21 (ENSMICG00000044053)	H2AC20 (ENSMICG00000048145)	ENSMICG00000044581	ENSMICG00000043363	H2AC18 (ENSMICG00000043969)	ENSMICG00000046339	ENSMICG00000045632	FCGR1A (ENSMICG00000033541)	ENSMICG00000029326	HJV (ENSMICG00000037948) #21	TXNIP (ENSMICG00000038247) #22	POLR3GL (ENSMICG00000034663)	ANKRD34A (ENSMICG00000044107) #24	LIX1L (ENSMICG00000043095) #25	RBM8A (ENSMICG00000031698) #26	PEX11B (ENSMICG00000028232) #28	ITGA10 (ENSMICG00000036050) #29	ANKRD35 (ENSMICG00000028514) #30	PIAS3 (ENSMICG00000033732) #31	NUDT17 (ENSMICG00000031177) #32	POLR3C (ENSMICG00000034253) #33	RNF115 (ENSMICG00000044821) #35	CD160 (ENSMICG00000038733)	ENSMICG00000028695	PDZK1 (ENSMICG00000038001) #36	ENSMICG00000005562 #37
Lemuriformes_a	ANCESTRAL SPECIES	31															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Coquerels sifaka	MODERN SPECIES	285														HJV (ENSPCOG00000021570) #21	ENSPCOG00000021634	TXNIP (ENSPCOG00000026484) #22	POLR3GL (ENSPCOG00000015376)	LIX1L (ENSPCOG00000019652) #25	RBM8A (ENSPCOG00000022886) #26	ENSPCOG00000018753 #28	ITGA10 (ENSPCOG00000022970) #29	ANKRD35 (ENSPCOG00000024317) #30	PIAS3 (ENSPCOG00000015621) #31	NUDT17 (ENSPCOG00000027998) #32	POLR3C (ENSPCOG00000024937) #33	RNF115 (ENSPCOG00000025202) #35	CD160 (ENSPCOG00000021195)	PDZK1 (ENSPCOG00000017661) #36	ENSPCOG00000026855 #37	GJA8 (ENSPCOG00000017237)	ENSPCOG00000018085
Greater bamboo lemur	MODERN SPECIES	195															HJV (ENSPSMG00000013090) #21	TXNIP (ENSPSMG00000013120) #22	ENSPSMG00000013158	ANKRD34A (ENSPSMG00000013169) #24	LIX1L (ENSPSMG00000013178) #25	RBM8A (ENSPSMG00000013193) #26	PEX11B (ENSPSMG00000013208) #28	ITGA10 (ENSPSMG00000013227) #29	ANKRD35 (ENSPSMG00000013257) #30	PIAS3 (ENSPSMG00000013317) #31	NUDT17 (ENSPSMG00000013359) #32	POLR3C (ENSPSMG00000013402) #33	RNF115 (ENSPSMG00000013416) #35	CD160 (ENSPSMG00000013433)	PDZK1 (ENSPSMG00000013455) #36	ENSPSMG00000013481 #37	GJA8 (ENSPSMG00000013496)
Bushbaby	MODERN SPECIES	188															HJV (ENSOGAG00000026238) #21	TXNIP (ENSOGAG00000000199) #22	POLR3GL (ENSOGAG00000000200)	ANKRD34A (ENSOGAG00000028203) #24	LIX1L (ENSOGAG00000031746) #25	RBM8A (ENSOGAG00000000202) #26	PEX11B (ENSOGAG00000000204) #28	ITGA10 (ENSOGAG00000000205) #29	ANKRD35 (ENSOGAG00000025100) #30	PIAS3 (ENSOGAG00000000207) #31	NUDT17 (ENSOGAG00000000208) #32	POLR3C (ENSOGAG00000000209) #33	RNF115 (ENSOGAG00000000210) #35	CD160 (ENSOGAG00000027280)	PDZK1 (ENSOGAG00000028874) #36	ENSOGAG00000003605 #37	GJA8 (ENSOGAG00000024601)
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.t.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Tarsier	MODERN SPECIES	5845															HFE2 (ENSTSYG00000013724) #21	TXNIP (ENSTSYG00000013551) #22	POLR3GL (ENSTSYG00000000052)	LIX1L (ENSTSYG00000007282) #25	RBM8A (ENSTSYG00000028809) #26	ENSTSYG00000000907 #27	PEX11B (ENSTSYG00000000908) #28	ITGA10 (ENSTSYG00000000909) #29	ANKRD35 (ENSTSYG00000014144) #30	PIAS3 (ENSTSYG00000002265) #31	NUDT17 (ENSTSYG00000002288) #32	POLR3C (ENSTSYG00000002292) #33	RNF115 (ENSTSYG00000004867) #35	CD160 (ENSTSYG00000004869)	PDZK1 (ENSTSYG00000007265) #36	ENSTSYG00000026694 #37	GJA8 (ENSTSYG00000027868)
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.t.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00420000029746.f.c	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.A	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b	ENSGT01020000230360.c.b.a.b.a.b	ENSGT01060000248528.b.kh.yb.b.b.b.b	ENSGT01100000263514.A.e.a.a	ENSGT01060000248528.b.jh.b	ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00940000160915.e.b	ENSGT00950000183190.a.b.a.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Hominoidea	ANCESTRAL SPECIES	32															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Hominidae	ANCESTRAL SPECIES	30															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	33															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Homo/Pan group	ANCESTRAL SPECIES	32	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D	ENSGT01030000234531.A.b.b.b.b.b.e.b.a	ENSGT01050000244864.C	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT00940000154810.c	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000155425.l	ENSGT00940000159284	ENSGT00830000128380.q.a	ENSGT00940000154913.g.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22
Human	MODERN SPECIES		NBPF11 (ENSG00000263956)	GPR89B (ENSG00000188092) #37	GJA8 (ENSG00000121634)	GJA5 (ENSG00000265107)	ACP6 (ENSG00000162836)	ENSG00000288626	BCL9 (ENSG00000116128)	CHD1L (ENSG00000131778)	FMO5 (ENSG00000131781)	PRKAB2 (ENSG00000131791)	NBPF12 (ENSG00000268043)	PPIAL4H (ENSG00000270339)	NOTCH2NLA (ENSG00000264343)	NBPF10 (ENSG00000271425)	HJV (ENSG00000168509) #21	TXNIP (ENSG00000265972) #22	POLR3GL (ENSG00000121851)	ANKRD34A (ENSG00000272031) #24	LIX1L (ENSG00000271601) #25	ENSG00000280778	RBM8A (ENSG00000265241) #26	PEX11B (ENSG00000131779) #28	ITGA10 (ENSG00000143127) #29	ANKRD35 (ENSG00000198483) #30	PIAS3 (ENSG00000131788) #31	NUDT17 (ENSG00000186364) #32	POLR3C (ENSG00000186141) #33	RNF115 (ENSG00000265491) #35	CD160 (ENSG00000117281)	PDZK1 (ENSG00000174827) #36	GPR89A (ENSG00000117262) #37
Pan	ANCESTRAL SPECIES																	ENSGT00940000158522 #22
Chimpanzee	MODERN SPECIES	95																TXNIP (ENSPTRG00000001197) #22
Gorilla	MODERN SPECIES		HMGCS2 (ENSGGOG00000010293)	REG4 (ENSGGOG00000000553)	ENSGGOG00000043775	ADAM30 (ENSGGOG00000004006)	NOTCH2 (ENSGGOG00000004007)	ENSGGOG00000037054	ENSGGOG00000041518	ENSGGOG00000024499	ENSGGOG00000037577	ENSGGOG00000038304	ENSGGOG00000040778	ENSGGOG00000005721	ENSGGOG00000041877	ENSGGOG00000016905	HJV (ENSGGOG00000004941) #21	TXNIP (ENSGGOG00000011838) #22	POLR3GL (ENSGGOG00000011848)	ANKRD34A (ENSGGOG00000026080) #24	LIX1L (ENSGGOG00000005408) #25	RBM8A (ENSGGOG00000037248) #26	ENSGGOG00000005412	PEX11B (ENSGGOG00000015402) #28	ITGA10 (ENSGGOG00000015407) #29	ANKRD35 (ENSGGOG00000015424) #30	PIAS3 (ENSGGOG00000007266) #31	NUDT17 (ENSGGOG00000007275) #32	POLR3C (ENSGGOG00000007279) #33	RNF115 (ENSGGOG00000007291) #35	ENSGGOG00000024675	ENSGGOG00000037578	ENSGGOG00000038111
Orangutan	MODERN SPECIES		PDE4DIP (ENSPPYG00000030940)	ENSPPYG00000040487	GJA8 (ENSPPYG00000000951)	GJA5 (ENSPPYG00000000949)	ACP6 (ENSPPYG00000000948)	BCL9 (ENSPPYG00000000947)	ENSPPYG00000033902	CHD1L (ENSPPYG00000000946)	FMO5 (ENSPPYG00000000944)	ENSPPYG00000039259	PRKAB2 (ENSPPYG00000000943)	ENSPPYG00000032826	ENSPPYG00000041067	ENSPPYG00000039140	HJV (ENSPPYG00000000925) #21	TXNIP (ENSPPYG00000000926) #22	ENSPPYG00000029539 #23	ANKRD34A (ENSPPYG00000000927) #24	LIX1L (ENSPPYG00000000928) #25	RBM8A (ENSPPYG00000000929) #26	ENSPPYG00000000930	PEX11B (ENSPPYG00000000931) #28	ITGA10 (ENSPPYG00000000932) #29	ANKRD35 (ENSPPYG00000000933) #30	PIAS3 (ENSPPYG00000000934) #31	NUDT17 (ENSPPYG00000000935) #32	POLR3C (ENSPPYG00000000936) #33	RNF115 (ENSPPYG00000000937) #35	ENSPPYG00000000938	PDZK1 (ENSPPYG00000000939) #36	ENSPPYG00000000940 #37
Gibbon	MODERN SPECIES	2	GJA5 (ENSNLEG00000034607)	ACP6 (ENSNLEG00000000233)	BCL9 (ENSNLEG00000000223)	ENSNLEG00000030334	CHD1L (ENSNLEG00000000179)	FMO5 (ENSNLEG00000000170)	PRKAB2 (ENSNLEG00000000157)	ENSNLEG00000032080	ENSNLEG00000029528	ENSNLEG00000035551	ENSNLEG00000033202	ENSNLEG00000034663	ENSNLEG00000033337	ENSNLEG00000032408	HJV (ENSNLEG00000005823) #21	TXNIP (ENSNLEG00000005808) #22	POLR3GL (ENSNLEG00000005797)	ANKRD34A (ENSNLEG00000005792) #24	LIX1L (ENSNLEG00000032979) #25	RBM8A (ENSNLEG00000029632) #26	ENSNLEG00000029457 #27	PEX11B (ENSNLEG00000034032) #28	ITGA10 (ENSNLEG00000027150) #29	ANKRD35 (ENSNLEG00000005675) #30	PIAS3 (ENSNLEG00000005672) #31	ENSNLEG00000005664 #32	POLR3C (ENSNLEG00000005645) #33	RNF115 (ENSNLEG00000005628) #35	CD160 (ENSNLEG00000005622)	PDZK1 (ENSNLEG00000005613) #36	ENSNLEG00000005551 #37
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537.m	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.t.a.b	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00940000160915.e.b	ENSGT00950000183190.a.b.a.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Cercopithecinae	ANCESTRAL SPECIES		ENSGT01100000263559.A.f.e	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00420000029746.f.c.b	ENSGT00910000147134	ENSGT01050000244864.D	ENSGT01030000234531.A.b.b.b.b.b.e.b.a	ENSGT01050000244864.C	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00420000029746.e.a.b.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000018706.m.a	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36
Vervet Monkey	MODERN SPECIES	12	RFX5 (ENSCSAG00000001799)	PI4KB (ENSCSAG00000001798)	ZNF687 (ENSCSAG00000001797)	ENSCSAG00000001796	PIP5K1A (ENSCSAG00000001795)	VPS72 (ENSCSAG00000001794)	TMOD4 (ENSCSAG00000001793)	ENSCSAG00000001791	SCNM1 (ENSCSAG00000001790)	LYSMD1 (ENSCSAG00000001789)	TNFAIP8L2 (ENSCSAG00000001788)	SEMA6C (ENSCSAG00000001787)	GABPB2 (ENSCSAG00000001786)	MLLT11 (ENSCSAG00000000178)	HJV (ENSCSAG00000001783) #21	TXNIP (ENSCSAG00000001782) #22	POLR3GL (ENSCSAG00000001781)	ANKRD34A (ENSCSAG00000000177) #24	LIX1L (ENSCSAG00000001780) #25	RBM8A (ENSCSAG00000001779) #26	ENSCSAG00000001778 #27	PEX11B (ENSCSAG00000001777) #28	ITGA10 (ENSCSAG00000001775) #29	ANKRD35 (ENSCSAG00000001771) #30	PIAS3 (ENSCSAG00000001768) #31	NUDT17 (ENSCSAG00000001766) #32	POLR3C (ENSCSAG00000001762) #33	RNF115 (ENSCSAG00000001760) #35	ENSCSAG00000000176	CD160 (ENSCSAG00000001758)	PDZK1 (ENSCSAG00000001757) #36
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000009543.d	ENSGT00420000029746.f.c.a	ENSGT00420000029746.f.c.b.b	ENSGT00400000022759	ENSGT00910000147134	ENSGT01050000244864.D	ENSGT01030000234531.A.b.b.b.b.b.e.b.a	ENSGT01050000244864.C	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00420000029746.e.a.b.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Macaca	ANCESTRAL SPECIES		ENSGT00420000029746.f.c.b.a	ENSGT00390000009543.d	ENSGT00420000029746.f.c.a	ENSGT00400000022759	ENSGT00910000147134	ENSGT01050000244864.D	ENSGT01030000234531.A.b.b.b.b.b.e.b.a	ENSGT01050000244864.C	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00420000029746.e.a.b.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Pig-tailed macaque	MODERN SPECIES	556	ENSMNEG00000044380	GJA8 (ENSMNEG00000029170)	ENSMNEG00000034524	GJA5 (ENSMNEG00000025776)	ACP6 (ENSMNEG00000041512)	BCL9 (ENSMNEG00000028944)	CHD1L (ENSMNEG00000039905)	FMO5 (ENSMNEG00000039870)	PRKAB2 (ENSMNEG00000006049)	ENSMNEG00000034698	ENSMNEG00000034048	ENSMNEG00000031406	ENSMNEG00000035296	ENSMNEG00000045234	HJV (ENSMNEG00000044723) #21	TXNIP (ENSMNEG00000042880) #22	POLR3GL (ENSMNEG00000029007)	ANKRD34A (ENSMNEG00000019192) #24	LIX1L (ENSMNEG00000034725) #25	RBM8A (ENSMNEG00000040422) #26	ENSMNEG00000042887 #27	PEX11B (ENSMNEG00000029865) #28	ITGA10 (ENSMNEG00000035387) #29	ANKRD35 (ENSMNEG00000031803) #30	PIAS3 (ENSMNEG00000036118) #31	NUDT17 (ENSMNEG00000041081) #32	POLR3C (ENSMNEG00000040944) #33	RNF115 (ENSMNEG00000031592) #35	ENSMNEG00000033399	CD160 (ENSMNEG00000043287)	PDZK1 (ENSMNEG00000021393) #36
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f.c.b.b	ENSGT00400000022759	ENSGT00960000186796.b.b.a	ENSGT00910000147134	ENSGT01050000244864.D	ENSGT01050000244864.C	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00420000029746.e.a.b.b.b.a	ENSGT00940000162994.e.a.d.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Rhesus	MODERN SPECIES		H2BC18 (ENSMMUG00000040506)	FCGR1A (ENSMMUG00000004362)	ENSMMUG00000062140	ENSMMUG00000048493	ENSMMUG00000057963	ENSMMUG00000056619	GJA8 (ENSMMUG00000001382)	GJA5 (ENSMMUG00000001803)	ACP6 (ENSMMUG00000013561)	BCL9 (ENSMMUG00000016786)	FMO5 (ENSMMUG00000000476)	CHD1L (ENSMMUG00000009024)	PRKAB2 (ENSMMUG00000012221)	ENSMMUG00000050315	ENSMMUG00000065207	TXNIP (ENSMMUG00000007338) #22	HJV (ENSMMUG00000016054) #21	POLR3GL (ENSMMUG00000016738)	ANKRD34A (ENSMMUG00000040654) #24	LIX1L (ENSMMUG00000016053) #25	RBM8A (ENSMMUG00000016051) #26	GNRHR2 (ENSMMUG00000016049) #27	PEX11B (ENSMMUG00000016048) #28	ITGA10 (ENSMMUG00000016043) #29	NUDT17 (ENSMMUG00000016734)	POLR3C (ENSMMUG00000016735) #33	RNF115 (ENSMMUG00000016736) #35	CD160 (ENSMMUG00000007969)	PDZK1 (ENSMMUG00000019642) #36	GPR89A (ENSMMUG00000019640) #37	ENSMMUG00000053312
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000065130	GJA8 (ENSMFAG00000040959)	GJA5 (ENSMFAG00000018627)	ACP6 (ENSMFAG00000046287)	BCL9 (ENSMFAG00000043762)	ENSMFAG00000050845	CHD1L (ENSMFAG00000043562)	FMO5 (ENSMFAG00000002744)	PRKAB2 (ENSMFAG00000040178)	ENSMFAG00000050143	ENSMFAG00000056274	ENSMFAG00000050068	ENSMFAG00000064167	ENSMFAG00000052714	HJV (ENSMFAG00000045741) #21	TXNIP (ENSMFAG00000046327) #22	POLR3GL (ENSMFAG00000001219)	ANKRD34A (ENSMFAG00000050371) #24	LIX1L (ENSMFAG00000031809) #25	RBM8A (ENSMFAG00000045376) #26	PEX11B (ENSMFAG00000052735) #28	ITGA10 (ENSMFAG00000043309) #29	ANKRD35 (ENSMFAG00000036117) #30	PIAS3 (ENSMFAG00000001990) #31	NUDT17 (ENSMFAG00000042456) #32	POLR3C (ENSMFAG00000040338) #33	RNF115 (ENSMFAG00000042451) #35	PDZK1 (ENSMFAG00000018292) #36	ENSMFAG00000041095	CD160 (ENSMFAG00000043835)	ENSMFAG00000001098 #37
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000009543.d	ENSGT00420000029746.f.c.a	ENSGT00420000029746.f.c.b.b	ENSGT00400000022759	ENSGT00940000154913.g.b	ENSGT00910000147134	ENSGT01050000244864.D	ENSGT01050000244864.C	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00420000029746.e.a.b.a.a.a.a.a.a.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Cercopithecinae_d	ANCESTRAL SPECIES	131	ENSGT00420000029746.f.c.a	ENSGT00420000029746.f.c.b.b	ENSGT00400000022759	ENSGT00940000154913.g.b	ENSGT00910000147134	ENSGT01050000244864.D	ENSGT01050000244864.C	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00830000128380.q.a.b	ENSGT00420000029746.e.a.b.a.a.a.a.a.a.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Sooty mangabey	MODERN SPECIES	194	ENSCATG00000008183	ENSCATG00000000382	ENSCATG00000040939	ENSCATG00000033281	ENSCATG00000042443	GJA8 (ENSCATG00000015119)	GJA5 (ENSCATG00000007536)	ACP6 (ENSCATG00000014613)	BCL9 (ENSCATG00000030994)	CHD1L (ENSCATG00000031044)	FMO5 (ENSCATG00000040938)	PRKAB2 (ENSCATG00000000041)	ENSCATG00000017276	ENSCATG00000042290	HJV (ENSCATG00000038953) #21	TXNIP (ENSCATG00000036044) #22	POLR3GL (ENSCATG00000029165)	ANKRD34A (ENSCATG00000022266) #24	LIX1L (ENSCATG00000043797) #25	RBM8A (ENSCATG00000021691) #26	ENSCATG00000040744 #27	PEX11B (ENSCATG00000043142) #28	ITGA10 (ENSCATG00000036989) #29	ANKRD35 (ENSCATG00000033067) #30	PIAS3 (ENSCATG00000033935) #31	NUDT17 (ENSCATG00000044860) #32	POLR3C (ENSCATG00000040166) #33	RNF115 (ENSCATG00000013570) #35	CD160 (ENSCATG00000044591)	PDZK1 (ENSCATG00000029964) #36	ENSCATG00000036016 #37
Drill	MODERN SPECIES	1162								ENSMLEG00000035318	CHD1L (ENSMLEG00000030900)	FMO5 (ENSMLEG00000026338)	PRKAB2 (ENSMLEG00000041069)	ENSMLEG00000042644	ENSMLEG00000028976	ENSMLEG00000001564	HJV (ENSMLEG00000036644) #21	TXNIP (ENSMLEG00000024506) #22	POLR3GL (ENSMLEG00000025659)	ANKRD34A (ENSMLEG00000027890) #24	LIX1L (ENSMLEG00000029509) #25	RBM8A (ENSMLEG00000039155) #26	ENSMLEG00000033510 #27	PEX11B (ENSMLEG00000035501) #28	ITGA10 (ENSMLEG00000005613) #29	ANKRD35 (ENSMLEG00000037307) #30	PIAS3 (ENSMLEG00000042795) #31	NUDT17 (ENSMLEG00000036200) #32	POLR3C (ENSMLEG00000031091) #33	ENSMLEG00000000453	RNF115 (ENSMLEG00000031561) #35	CD160 (ENSMLEG00000033371)	PDZK1 (ENSMLEG00000043823) #36
Rhinopithecus	ANCESTRAL SPECIES	203															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Golden snub-nosed monkey	MODERN SPECIES	1787														ENSRROG00000037765	HJV (ENSRROG00000039652) #21	TXNIP (ENSRROG00000038277) #22	POLR3GL (ENSRROG00000042893)	ANKRD34A (ENSRROG00000024046) #24	LIX1L (ENSRROG00000043656) #25	ENSRROG00000040324 #26	ENSRROG00000033269 #27	PEX11B (ENSRROG00000035432) #28	ITGA10 (ENSRROG00000038520) #29	ANKRD35 (ENSRROG00000032024) #30	PIAS3 (ENSRROG00000036054) #31	NUDT17 (ENSRROG00000041547) #32	POLR3C (ENSRROG00000039959) #33	RNF115 (ENSRROG00000039547) #35	CD160 (ENSRROG00000033492)	PDZK1 (ENSRROG00000043643) #36	ENSRROG00000031200 #37
Black snub-nosed monkey	MODERN SPECIES	68															HJV (ENSRBIG00000031275) #21	TXNIP (ENSRBIG00000039040) #22	POLR3GL (ENSRBIG00000042869)	ANKRD34A (ENSRBIG00000001302) #24	LIX1L (ENSRBIG00000027718) #25	RBM8A (ENSRBIG00000039233) #26	ENSRBIG00000036990 #27	PEX11B (ENSRBIG00000031295) #28	ITGA10 (ENSRBIG00000035019) #29	ANKRD35 (ENSRBIG00000033813) #30	PIAS3 (ENSRBIG00000031384) #31	NUDT17 (ENSRBIG00000036472) #32	POLR3C (ENSRBIG00000035432) #33	RNF115 (ENSRBIG00000038852) #35	CD160 (ENSRBIG00000029966)	PDZK1 (ENSRBIG00000038400) #36	ENSRBIG00000033905 #37
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537.o	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.t.a.a.a	ENSGT01100000263559.B	ENSGT00940000156302	ENSGT01100000263559.A.f.e	ENSGT01060000248528.b.kh.yb.b.b.a.a	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Mas night monkey	MODERN SPECIES	643												ENSANAG00000021930	ENSANAG00000033730	ENSANAG00000021979	ENSANAG00000026292 #21	TXNIP (ENSANAG00000029418) #22	POLR3GL (ENSANAG00000034566)	ANKRD34A (ENSANAG00000011901) #24	LIX1L (ENSANAG00000027833) #25	ENSANAG00000025460	RBM8A (ENSANAG00000004525) #26	ENSANAG00000025306 #27	PEX11B (ENSANAG00000034355) #28	ITGA10 (ENSANAG00000028564) #29	ANKRD35 (ENSANAG00000025664) #30	ENSANAG00000019413 #31	NUDT17 (ENSANAG00000029932) #32	POLR3C (ENSANAG00000036434) #33	RNF115 (ENSANAG00000031327) #35	CD160 (ENSANAG00000037284)	PDZK1 (ENSANAG00000030760) #36
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537.o	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.t.a.a.a	ENSGT01100000263559.B	ENSGT00940000156302	ENSGT01100000263559.A.f.e	ENSGT01060000248528.b.kh.yb.b.b.a.a	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Cebidae_a	ANCESTRAL SPECIES	115															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00940000167151	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36
Capuchin	MODERN SPECIES	541															HJV (ENSCCAG00000028604) #21	TXNIP (ENSCCAG00000028414) #22	POLR3GL (ENSCCAG00000025552)	ANKRD34A (ENSCCAG00000019915) #24	ENSCCAG00000034407	ENSCCAG00000028589 #26	ENSCCAG00000020366 #27	PEX11B (ENSCCAG00000029335) #28	ITGA10 (ENSCCAG00000027810) #29	ANKRD35 (ENSCCAG00000020263) #30	PIAS3 (ENSCCAG00000020706) #31	NUDT17 (ENSCCAG00000036240) #32	POLR3C (ENSCCAG00000027077) #33	RNF115 (ENSCCAG00000025268) #35	CD160 (ENSCCAG00000034950)	PDZK1 (ENSCCAG00000027287) #36	ENSCCAG00000028988 #37
Bolivian squirrel monkey	MODERN SPECIES	253															HJV (ENSSBOG00000018828) #21	TXNIP (ENSSBOG00000025441) #22	LIX1L (ENSSBOG00000031027) #25	RBM8A (ENSSBOG00000031316) #26	ENSSBOG00000034418	PEX11B (ENSSBOG00000028402) #28	ITGA10 (ENSSBOG00000027492) #29	ANKRD35 (ENSSBOG00000030477) #30	PIAS3 (ENSSBOG00000024628) #31	NUDT17 (ENSSBOG00000018888) #32	POLR3C (ENSSBOG00000028429) #33	RNF115 (ENSSBOG00000028123) #35	CD160 (ENSSBOG00000017632)	PDZK1 (ENSSBOG00000024467) #36	ENSSBOG00000029296 #37	GJA8 (ENSSBOG00000016505)	ACP6 (ENSSBOG00000020765)
Marmoset	MODERN SPECIES	9	ENSCJAG00000083438	ENSCJAG00000087228	H2BC18 (ENSCJAG00000041683)	ENSCJAG00000074017	FCGR1A (ENSCJAG00000000771)	ENSCJAG00000069867	ENSCJAG00000084089	ENSCJAG00000078453	ENSCJAG00000062347	ENSCJAG00000020687	ENSCJAG00000084541	ENSCJAG00000081006	ENSCJAG00000083457	ENSCJAG00000086209	HJV (ENSCJAG00000041142) #21	TXNIP (ENSCJAG00000002161) #22	POLR3GL (ENSCJAG00000002179)	ANKRD34A (ENSCJAG00000002193) #24	LIX1L (ENSCJAG00000002198) #25	RBM8A (ENSCJAG00000046869) #26	ENSCJAG00000002216 #27	PEX11B (ENSCJAG00000002223) #28	ITGA10 (ENSCJAG00000002231) #29	ENSCJAG00000073435	ANKRD35 (ENSCJAG00000002247) #30	PIAS3 (ENSCJAG00000002257) #31	NUDT17 (ENSCJAG00000074938) #32	POLR3C (ENSCJAG00000002314) #33	RNF115 (ENSCJAG00000002332) #35	CD160 (ENSCJAG00000002349)	PDZK1 (ENSCJAG00000002353) #36
Laurasiatheria	ANCESTRAL SPECIES		ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT00940000153092.a.a.c.a.b	ENSGT01100000263575.A	ENSGT01100000263575.B.t.a.a.a	ENSGT00940000156302	ENSGT01100000263559.B	ENSGT01100000263569.a.b.b	ENSGT00940000164494	ENSGT01060000248528.a.b.a.a.a.b	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Eulipotyphla	ANCESTRAL SPECIES	55															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00940000158423 #29	ENSGT00530000063074.a #30
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	11894																ENSEEUG00000007312 #22
Hedgehog	MODERN SPECIES	1895																ENSEEUG00000010526 #22	POLR3GL (ENSEEUG00000010804)
Common shrew	MODERN SPECIES	7108															HJV (ENSSARG00000013277) #21	TXNIP (ENSSARG00000013282) #22	LIX1L (ENSSARG00000013285) #25	RBM8A (ENSSARG00000013289) #26	ENSSARG00000013301 #27	ENSSARG00000013319 #29	ANKRD35 (ENSSARG00000013347) #30
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000153092.a.a.c.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT00990000203553.c.a.a.a.b	ENSGT01100000263575.B.u	ENSGT00940000156302	ENSGT01100000263559.B	ENSGT01100000263569.a.b.b	ENSGT00940000164494	ENSGT01060000248528.a.b.a.a.a.b	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263506.a.e.a.a.b.a	ENSGT01060000248528.b.jh.a.a.b	ENSGT01100000263559.A.e.a	ENSGT01100000263506.a.e.a.a.a.a.b.a	ENSGT00940000153125.C	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b	ENSGT00940000153125.E.c.b	ENSGT01100000263506.a.e.a.a.a.a.b.b	ENSGT00940000153125.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Carnivora	ANCESTRAL SPECIES	1	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.A	ENSGT00940000153092.a.a.c.a.b	ENSGT01100000263575.B.u	ENSGT00940000156302	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Felidae	ANCESTRAL SPECIES	10	ENSGT01100000263474.a.b.b.e.a.a.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a	ENSGT00940000153118.db.a.b	ENSGT01100000263506.a.e.a.a.a.a.b.b	ENSGT01060000248528.b.kh.yb.d	ENSGT00940000155501.a.b.e.b	ENSGT01100000263567.a.b	ENSGT01060000248528.b.kh.xb.b.b	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00390000016972.a.b.b ##34	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Panthera	ANCESTRAL SPECIES	59															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Panthera_a	ANCESTRAL SPECIES	38	ENSGT00390000003103	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
leopard	MODERN SPECIES	195															HJV (ENSPPRG00000008030) #21	TXNIP (ENSPPRG00000008047) #22	POLR3GL (ENSPPRG00000008079)	ANKRD34A (ENSPPRG00000008085) #24	LIX1L (ENSPPRG00000008218) #25	RBM8A (ENSPPRG00000008243) #26	ENSPPRG00000008264	ENSPPRG00000008275	PEX11B (ENSPPRG00000008333) #28	ITGA10 (ENSPPRG00000008406) #29	ANKRD35 (ENSPPRG00000008454) #30	PIAS3 (ENSPPRG00000008526) #31	NUDT17 (ENSPPRG00000008551) #32	POLR3C (ENSPPRG00000008809) #33	RNF115 (ENSPPRG00000008854) #35	CD160 (ENSPPRG00000008891)	PDZK1 (ENSPPRG00000008955) #36
lion	MODERN SPECIES	8	C1orf54 (ENSPLOG00000018755)	APH1A (ENSPLOG00000018596)	CA14 (ENSPLOG00000018473)	ANP32E (ENSPLOG00000018252)	PLEKHO1 (ENSPLOG00000018167)	VPS45 (ENSPLOG00000017939)	OTUD7B (ENSPLOG00000017898)	MTMR11 (ENSPLOG00000017771)	SF3B4 (ENSPLOG00000017698)	SV2A (ENSPLOG00000017521)	BOLA1 (ENSPLOG00000017492)	H2AC21 (ENSPLOG00000017476)	H2AC20 (ENSPLOG00000017459)	ENSPLOG00000017448	HJV (ENSPLOG00000017362) #21	TXNIP (ENSPLOG00000017292) #22	ENSPLOG00000017238	ENSPLOG00000017202 #24	LIX1L (ENSPLOG00000017177) #25	RBM8A (ENSPLOG00000017084) #26	PEX11B (ENSPLOG00000017016) #28	ITGA10 (ENSPLOG00000016554) #29	ANKRD35 (ENSPLOG00000016395) #30	PIAS3 (ENSPLOG00000016111) #31	ENSPLOG00000016064	POLR3C (ENSPLOG00000016003) #33	RNF115 (ENSPLOG00000015958) #35	CD160 (ENSPLOG00000015826)	PDZK1 (ENSPLOG00000015685) #36	ENSPLOG00000015564 #37	GJA8 (ENSPLOG00000015530)
Tiger	MODERN SPECIES	386																TXNIP (ENSPTIG00000009240) #22	ENSPTIG00000009306	ENSPTIG00000009443 #24	LIX1L (ENSPTIG00000009452) #25	RBM8A (ENSPTIG00000009472) #26	PEX11B (ENSPTIG00000009516) #28	ITGA10 (ENSPTIG00000009565) #29	ANKRD35 (ENSPTIG00000009686) #30	PIAS3 (ENSPTIG00000009778) #31	NUDT17 (ENSPTIG00000009873) #32	POLR3C (ENSPTIG00000009916) #33	RNF115 (ENSPTIG00000010069) #35	CD160 (ENSPTIG00000010081)	PDZK1 (ENSPTIG00000010102) #36	ENSPTIG00000010170 #37	GJA5 (ENSPTIG00000008762)
Cat	MODERN SPECIES	239	OTUD7B (ENSFCAG00000010110)	MTMR11 (ENSFCAG00000010108)	SF3B4 (ENSFCAG00000010106)	ENSFCAG00000051403	SV2A (ENSFCAG00000010104)	H2BC19 (ENSFCAG00000044074)	ENSFCAG00000047792	H4C14 (ENSFCAG00000023368)	H3C13 (ENSFCAG00000045408)	H2BC18 (ENSFCAG00000046241)	FCGR1A (ENSFCAG00000027331)	ENSFCAG00000044482 ##34	ENSFCAG00000025610	ENSFCAG00000031642	HJV (ENSFCAG00000043881) #21	TXNIP (ENSFCAG00000029919) #22	POLR3GL (ENSFCAG00000005410)	ANKRD34A (ENSFCAG00000002723) #24	LIX1L (ENSFCAG00000033679) #25	RBM8A (ENSFCAG00000033936) #26	PEX11B (ENSFCAG00000030808) #28	ITGA10 (ENSFCAG00000005415) #29	ANKRD35 (ENSFCAG00000005416) #30	PIAS3 (ENSFCAG00000031238) #31	NUDT17 (ENSFCAG00000022065) #32	POLR3C (ENSFCAG00000013360) #33	RNF115 (ENSFCAG00000039680) #35	CD160 (ENSFCAG00000013367)	PDZK1 (ENSFCAG00000013368) #36	ENSFCAG00000024477 #37	GJA8 (ENSFCAG00000012909)
Caniformia	ANCESTRAL SPECIES	31	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01060000248528.b.kh.yb.c.a	ENSGT01100000263559.A.f	ENSGT01060000248528.b.jh.a.b	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01060000248528.b.kh.yb.c.a	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263883	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000156302	ENSGT01100000263575.B.u	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263883	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b.c #36	ENSGT00390000000684 #37
Dingo	MODERN SPECIES	223	ENSCAFG00020019789	H2AC21 (ENSCAFG00020019793)	ENSCAFG00020019797	ENSCAFG00020019814	ENSCAFG00020019823	ENSCAFG00020019846	ENSCAFG00020019848	ENSCAFG00020019854	ENSCAFG00020019867	ENSCAFG00020019897	H2BC18 (ENSCAFG00020019901)	FCGR1A (ENSCAFG00020019916)	ENSCAFG00020019917	ENSCAFG00020019918	HJV (ENSCAFG00020019923) #21	TXNIP (ENSCAFG00020019925) #22	ENSCAFG00020019930	ANKRD34A (ENSCAFG00020019941) #24	LIX1L (ENSCAFG00020019943) #25	RBM8A (ENSCAFG00020019945) #26	ENSCAFG00020019946	PEX11B (ENSCAFG00020019947) #28	ITGA10 (ENSCAFG00020019948) #29	ANKRD35 (ENSCAFG00020019974) #30	PIAS3 (ENSCAFG00020019985) #31	NUDT17 (ENSCAFG00020020055) #32	POLR3C (ENSCAFG00020020066) #33	RNF115 (ENSCAFG00020020068) #35	ENSCAFG00020020069	CD160 (ENSCAFG00020020071)	ENSCAFG00020020077 #36
Dog	MODERN SPECIES	8	PLEKHO1 (ENSCAFG00845012601)	VPS45 (ENSCAFG00845012364)	OTUD7B (ENSCAFG00845012281)	MTMR11 (ENSCAFG00845012198)	SF3B4 (ENSCAFG00845012146)	SV2A (ENSCAFG00845012074)	ENSCAFG00845012017	ENSCAFG00845011998	ENSCAFG00845011880	ENSCAFG00845011830	ENSCAFG00845011803	FCGR1A (ENSCAFG00845011691)	ENSCAFG00845011630	ENSCAFG00845011593	ENSCAFG00845011506 #21	TXNIP (ENSCAFG00845011435) #22	POLR3GL (ENSCAFG00845011382)	ANKRD34A (ENSCAFG00845011351) #24	LIX1L (ENSCAFG00845011297) #25	RBM8A (ENSCAFG00845011260) #26	ENSCAFG00845011225	PEX11B (ENSCAFG00845011163) #28	ITGA10 (ENSCAFG00845010945) #29	ANKRD35 (ENSCAFG00845010809) #30	NUDT17 (ENSCAFG00845010768) #32	POLR3C (ENSCAFG00845010680) #33	ENSCAFG00845010635	RNF115 (ENSCAFG00845010343) #31	ENSCAFG00845010227	ENSCAFG00845010156 #36	GPR89A (ENSCAFG00845010053) #37
Red fox	MODERN SPECIES	176	ENSVVUG00000007732	SV2A (ENSVVUG00000007726)	BOLA1 (ENSVVUG00000007718)	H2AC21 (ENSVVUG00000007714)	H2AC20 (ENSVVUG00000007707)	H2BC21 (ENSVVUG00000007671)	ENSVVUG00000007660	H3-7 (ENSVVUG00000007640)	H2BC18 (ENSVVUG00000007606)	ENSVVUG00000007601	ENSVVUG00000007595	ENSVVUG00000007591	FCGR1A (ENSVVUG00000007556)	ENSVVUG00000007552	HJV (ENSVVUG00000007529) #21	TXNIP (ENSVVUG00000007524) #22	POLR3GL (ENSVVUG00000007497)	ANKRD34A (ENSVVUG00000007494) #24	LIX1L (ENSVVUG00000007490) #25	RBM8A (ENSVVUG00000007486) #26	PEX11B (ENSVVUG00000007477) #28	ITGA10 (ENSVVUG00000007459) #29	ANKRD35 (ENSVVUG00000007450) #30	PIAS3 (ENSVVUG00000007435) #31	NUDT17 (ENSVVUG00000007427) #32	POLR3C (ENSVVUG00000007421) #33	RNF115 (ENSVVUG00000007415) #35	PDZK1 (ENSVVUG00000007400) #36	ENSVVUG00000007391 #37	GJA8 (ENSVVUG00000007389)	GJA5 (ENSVVUG00000007383)
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT00940000156302	ENSGT01100000263506.a.e.a.a.a.a.b.a	ENSGT01060000248528.b.jh.a.b	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Mustelinae	ANCESTRAL SPECIES	144															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
American mink	MODERN SPECIES	407															HJV (ENSNVIG00000024216) #21	TXNIP (ENSNVIG00000024212) #22	POLR3GL (ENSNVIG00000024210)	ENSNVIG00000024208 #24	LIX1L (ENSNVIG00000024204) #25	RBM8A (ENSNVIG00000024202) #26	ENSNVIG00000024201 #27	PEX11B (ENSNVIG00000024200) #28	ITGA10 (ENSNVIG00000024197) #29	ANKRD35 (ENSNVIG00000024195) #30	PIAS3 (ENSNVIG00000024191) #31	NUDT17 (ENSNVIG00000024189) #32	POLR3C (ENSNVIG00000024183) #33	RNF115 (ENSNVIG00000024177) #35	CD160 (ENSNVIG00000024174)	PDZK1 (ENSNVIG00000024169) #36	ENSNVIG00000024160 #37
Ferret	MODERN SPECIES	473															HJV (ENSMPUG00000000817) #21	TXNIP (ENSMPUG00000000813) #22	ENSMPUG00000000809	ANKRD34A (ENSMPUG00000000805) #24	LIX1L (ENSMPUG00000000776) #25	RBM8A (ENSMPUG00000000775) #26	ENSMPUG00000000769 #27	PEX11B (ENSMPUG00000000767) #28	ITGA10 (ENSMPUG00000000708) #29	ENSMPUG00000000707	ANKRD35 (ENSMPUG00000000706) #30	PIAS3 (ENSMPUG00000000664) #31	NUDT17 (ENSMPUG00000000657) #32	POLR3C (ENSMPUG00000000656) #33	RNF115 (ENSMPUG00000000637) #35	ENSMPUG00000000634	PDZK1 (ENSMPUG00000000631) #36
Ursidae	ANCESTRAL SPECIES		ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263575.A	ENSGT01060000248528.b.jh.a.b	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263883	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185.p #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Ursus	ANCESTRAL SPECIES	170															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263883	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185.p #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Polar bear	MODERN SPECIES	308															ENSUMAG00000010339 #21	TXNIP (ENSUMAG00000010334) #22	ENSUMAG00000010324	ANKRD34A (ENSUMAG00000010315) #24	LIX1L (ENSUMAG00000010304) #25	RBM8A (ENSUMAG00000010298) #26	ENSUMAG00000010268 #27	PEX11B (ENSUMAG00000010263) #28	ITGA10 (ENSUMAG00000010222) #29	ANKRD35 (ENSUMAG00000010194) #30	PIAS3 (ENSUMAG00000010188) #31	NUDT17 (ENSUMAG00000010184) #32	POLR3C (ENSUMAG00000010180) #33	RNF115 (ENSUMAG00000010168) #35	CD160 (ENSUMAG00000010155)	PDZK1 (ENSUMAG00000010106) #36	ENSUMAG00000010086 #37
American black bear	MODERN SPECIES	2741															HJV (ENSUAMG00000021938) #21	TXNIP (ENSUAMG00000021937) #22	ENSUAMG00000021934	ANKRD34A (ENSUAMG00000021933) #24	LIX1L (ENSUAMG00000021930) #25	RBM8A (ENSUAMG00000021929) #26	ENSUAMG00000021927 #27	PEX11B (ENSUAMG00000021926) #28	ITGA10 (ENSUAMG00000021924) #29	ANKRD35 (ENSUAMG00000021920) #30	PIAS3 (ENSUAMG00000021915) #31	NUDT17 (ENSUAMG00000021911) #32	POLR3C (ENSUAMG00000021906) #33
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	11	OTUD7B (ENSAMEG00000010043)	MTMR11 (ENSAMEG00000010059)	SF3B4 (ENSAMEG00000010073)	SV2A (ENSAMEG00000010085)	BOLA1 (ENSAMEG00000018625)	H2AC21 (ENSAMEG00000030369)	H2AC20 (ENSAMEG00000030590)	H2BC21 (ENSAMEG00000024998)	ENSAMEG00000026973	H3C14 (ENSAMEG00000026075)	ENSAMEG00000031520	ENSAMEG00000007093	ENSAMEG00000029936	ENSAMEG00000006949	ENSAMEG00000026609 #21	TXNIP (ENSAMEG00000017638) #22	ENSAMEG00000017634	ANKRD34A (ENSAMEG00000017633) #24	LIX1L (ENSAMEG00000017628) #25	RBM8A (ENSAMEG00000017623) #26	ENSAMEG00000025842 #27	PEX11B (ENSAMEG00000031122) #28	PEX11B (ENSAMEG00000026333) #28	ITGA10 (ENSAMEG00000017585) #29	ANKRD35 (ENSAMEG00000027203) #30	NUDT17 (ENSAMEG00000017541) #32	POLR3C (ENSAMEG00000017531) #33	PIAS3 (ENSAMEG00000017546) #31	CD160 (ENSAMEG00000017521)	ENSAMEG00000017498 #36	ENSAMEG00000017475 #37
Giant Panda	MODERN SPECIES	1801																ENSAMEG00000031364 #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1840																ENSAMEG00000027519 #22
Giant Panda	MODERN SPECIES	853																ENSAMEG00000028554 #22
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.b	ENSGT01100000263559.B	ENSGT01100000263575.A	ENSGT00940000156302	ENSGT01100000263575.B.u	ENSGT00940000153125.D.a.a	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Chiroptera	ANCESTRAL SPECIES	20	ENSGT01100000263575.B.u	ENSGT00940000153125.E.c.a.a	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a	ENSGT00940000153125.E.c.a.b.b	ENSGT00940000162950	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT01060000248528.b.kh.yb.c.a	ENSGT01100000263514.A.e.a.b.a.b.a.b	ENSGT00940000153125.E.c.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.a	ENSGT01060000248528.b.jh.b	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.b	ENSGT01060000248528.b.jh.b	ENSGT01060000248528.b.kh.yb.d	ENSGT00940000155501.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b	ENSGT00940000153125.D.a.a	ENSGT01100000263575.B.u	ENSGT00940000156302	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Greater horseshoe bat	MODERN SPECIES	14	SV2A (ENSRFEG00010019515)	BOLA1 (ENSRFEG00010019489)	ENSRFEG00010019479	H2AC21 (ENSRFEG00010019466)	H2AC20 (ENSRFEG00010019447)	ENSRFEG00010019413	ENSRFEG00010019403	ENSRFEG00010019396	ENSRFEG00010019380	ENSRFEG00010019363	ENSRFEG00010019351	ENSRFEG00010019339	H2BC18 (ENSRFEG00010019313)	FCGR1A (ENSRFEG00010019271)	HJV (ENSRFEG00010019205) #21	TXNIP (ENSRFEG00010019128) #22	POLR3GL (ENSRFEG00010019091)	ANKRD34A (ENSRFEG00010019075) #24	LIX1L (ENSRFEG00010019031) #25	RBM8A (ENSRFEG00010018987) #26	PEX11B (ENSRFEG00010018908) #28	ITGA10 (ENSRFEG00010018433) #29	ANKRD35 (ENSRFEG00010018199) #30	PIAS3 (ENSRFEG00010018138) #31	NUDT17 (ENSRFEG00010018121) #32	POLR3C (ENSRFEG00010018066) #33	RNF115 (ENSRFEG00010018030) #35	CD160 (ENSRFEG00010017930)	PDZK1 (ENSRFEG00010017870) #36	ENSRFEG00010017789 #37	GJA8 (ENSRFEG00010017764)
Microbat	MODERN SPECIES	1127	FCER1A (ENSMLUG00000009715)	ENSMLUG00000009704	ACKR1 (ENSMLUG00000024152)	CADM3 (ENSMLUG00000009639)	OR6K6 (ENSMLUG00000002553)	SPTA1 (ENSMLUG00000016009)	OR10Z1 (ENSMLUG00000016005)	ENSMLUG00000007789	CD1B (ENSMLUG00000029770)	ENSMLUG00000027281	ENSMLUG00000022211	KIRREL1 (ENSMLUG00000012685)	ENSMLUG00000023942	ENSMLUG00000006063	HJV (ENSMLUG00000016923) #21	TXNIP (ENSMLUG00000016925) #22	ENSMLUG00000016931 #23	LIX1L (ENSMLUG00000016935) #25	ENSMLUG00000017436 #26	PEX11B (ENSMLUG00000016949) #28	ITGA10 (ENSMLUG00000016956) #29	ANKRD35 (ENSMLUG00000016966) #30	POLR3C (ENSMLUG00000004060) #33	RNF115 (ENSMLUG00000009733) #35	CD160 (ENSMLUG00000002901)	PDZK1 (ENSMLUG00000028785) #36	ENSMLUG00000003829 #37
Megabat	MODERN SPECIES	2106															ENSPVAG00000014460 #21	TXNIP (ENSPVAG00000014463) #22	POLR3GL (ENSPVAG00000014464)	ANKRD34A (ENSPVAG00000014466) #24	ENSPVAG00000014467	RBM8A (ENSPVAG00000014471) #26	ENSPVAG00000014473	PEX11B (ENSPVAG00000014475) #28	ITGA10 (ENSPVAG00000014476) #29	ANKRD35 (ENSPVAG00000014477) #30	PIAS3 (ENSPVAG00000014478) #31	NUDT17 (ENSPVAG00000014481) #32	POLR3C (ENSPVAG00000014483) #33	RNF115 (ENSPVAG00000014487) #35	CD160 (ENSPVAG00000014488)	PDZK1 (ENSPVAG00000014490) #36	ENSPVAG00000014491 #37
Equus	ANCESTRAL SPECIES	3	ENSGT01100000263567.a.a	ENSGT00940000160426	ENSGT01100000263506.a.e.a.a.a.b.a.a.a	ENSGT01060000248528.b.jh.a.b	ENSGT00940000163036.g.a.a.a	ENSGT01100000263575.A	ENSGT00940000156302	ENSGT01100000263575.B.u	ENSGT00940000153092.a.b.e.a.a	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT00420000029746.f	ENSGT00950000183190.a.b.a.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Horse	MODERN SPECIES	26	H2AC20 (ENSECAG00000049520)	H2BC20 (ENSECAG00000060054)	ENSECAG00000054279	H2AC19 (ENSECAG00000043631)	H2BC20 (ENSECAG00000053797)	H2BC19 (ENSECAG00000043501)	ENSECAG00000046705	H2BC18 (ENSECAG00000044618)	ENSECAG00000037030	ENSECAG00000014464	ENSECAG00000013628	ENSECAG00000013941	ENSECAG00000037385	POLR3GL (ENSECAG00000015900)	HJV (ENSECAG00000028996) #21	TXNIP (ENSECAG00000028144) #22	ANKRD34A (ENSECAG00000002458) #24	LIX1L (ENSECAG00000020654) #25	ENSECAG00000046198	RBM8A (ENSECAG00000022024) #26	GNRHR2 (ENSECAG00000023497) #27	PEX11B (ENSECAG00000002265) #28	ITGA10 (ENSECAG00000008533) #29	ANKRD35 (ENSECAG00000016226) #30	PIAS3 (ENSECAG00000017540) #31	NUDT17 (ENSECAG00000023259) #32	POLR3C (ENSECAG00000023713) #33	RNF115 (ENSECAG00000009030) #35	CD160 (ENSECAG00000010888)	PDZK1 (ENSECAG00000011351) #36	ENSECAG00000013689 #37
Donkey	MODERN SPECIES	17	MTMR11 (ENSEASG00005001485)	SF3B4 (ENSEASG00005001477)	SV2A (ENSEASG00005001472)	ENSEASG00005001466	H2AC21 (ENSEASG00005032093)	ENSEASG00005025005	ENSEASG00005026834	ENSEASG00005033525	ENSEASG00005027933	ENSEASG00005036493	ENSEASG00005037866	ENSEASG00005002125	ENSEASG00005002130	ENSEASG00005037767	ENSEASG00005025106 #21	TXNIP (ENSEASG00005007477) #22	POLR3GL (ENSEASG00005007466)	ANKRD34A (ENSEASG00005007463) #24	LIX1L (ENSEASG00005007459) #25	RBM8A (ENSEASG00005007455) #26	ENSEASG00005007451 #27	PEX11B (ENSEASG00005032013) #28	ITGA10 (ENSEASG00005007436) #29	ANKRD35 (ENSEASG00005007430) #30	PIAS3 (ENSEASG00005007424) #31	NUDT17 (ENSEASG00005007420) #32	POLR3C (ENSEASG00005007417) #33	RNF115 (ENSEASG00005007412) #35	CD160 (ENSEASG00005007404)	PDZK1 (ENSEASG00005007385) #36	ENSEASG00005007378 #37
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.A	ENSGT00940000153092.a.a.c.a.b.b.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT00990000203553.c.a.a.a.b	ENSGT01100000263506.a.e.a.a.b.b	ENSGT01100000263474.a.b.b.e.a.a.a.b	ENSGT00940000153118.db.b	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Suina	ANCESTRAL SPECIES	32											ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000264175 #23	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Chacoan peccary	MODERN SPECIES	29	SF3B4 (ENSCWAG00000010291)	SV2A (ENSCWAG00000010325)	BOLA1 (ENSCWAG00000010457)	H2AC21 (ENSCWAG00000010470)	H2AC20 (ENSCWAG00000010494)	H2BC21 (ENSCWAG00000010520)	H3C15 (ENSCWAG00000010535)	ENSCWAG00000010555	ENSCWAG00000010575	ENSCWAG00000010582	H2BC18 (ENSCWAG00000010598)	ENSCWAG00000010635	ENSCWAG00000010702	ENSCWAG00000010758	HJV (ENSCWAG00000010824) #21	TXNIP (ENSCWAG00000010902) #22	ENSCWAG00000010984 #23	ANKRD34A (ENSCWAG00000011022) #24	LIX1L (ENSCWAG00000011045) #25	RBM8A (ENSCWAG00000011078) #26	ENSCWAG00000011122 #27	PEX11B (ENSCWAG00000011193) #28	ITGA10 (ENSCWAG00000011314) #29	ANKRD35 (ENSCWAG00000011823) #30	PIAS3 (ENSCWAG00000012113) #31	NUDT17 (ENSCWAG00000012279) #32	POLR3C (ENSCWAG00000012364) #33	RNF115 (ENSCWAG00000012426) #35	PDZK1 (ENSCWAG00000012473) #36	ENSCWAG00000012533 #37	GJA8 (ENSCWAG00000012679)
Pig	MODERN SPECIES	12	BOLA1 (ENSSSCG00000006667)	H2AC21 (ENSSSCG00000063420)	H2AC20 (ENSSSCG00000034598)	ENSSSCG00000047083	ENSSSCG00000053902	ENSSSCG00000057447	H2BC21 (ENSSSCG00000060759)	ENSSSCG00000055629	ENSSSCG00000057512	H3C14 (ENSSSCG00000063270)	ENSSSCG00000059426	H2BC18 (ENSSSCG00000062160)	FCGR1A (ENSSSCG00000006678)	ENSSSCG00000006679	HJV (ENSSSCG00000035429) #21	TXNIP (ENSSSCG00000031262) #22	ENSSSCG00000006682 #23	ANKRD34A (ENSSSCG00000037823) #24	LIX1L (ENSSSCG00000026502) #25	RBM8A (ENSSSCG00000028509) #26	ENSSSCG00000006685 #27	PEX11B (ENSSSCG00000056541) #28	ITGA10 (ENSSSCG00000006687) #29	ANKRD35 (ENSSSCG00000006688) #30	PIAS3 (ENSSSCG00000006689) #31	NUDT17 (ENSSSCG00000006690) #32	POLR3C (ENSSSCG00000006691) #33	RNF115 (ENSSSCG00000037355) #35	PDZK1 (ENSSSCG00000006693) #36	ENSSSCG00000006694 #37	GJA8 (ENSSSCG00000036239)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263506.a.e.a.a.a.a.a	ENSGT01100000263575.B.t.a.a.a	ENSGT00940000156302	ENSGT01100000263559.B	ENSGT01100000263569.a.b.b	ENSGT00940000164494	ENSGT01060000248528.a.b.a.a.a.b	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.a.a.a.a.a.b	ENSGT01100000263559.B	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00910000145379	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D	ENSGT01050000244864.C
Arabian camel	MODERN SPECIES	13	SF3B4 (ENSCDRG00005015698)	SV2A (ENSCDRG00005015609)	BOLA1 (ENSCDRG00005015588)	H2AC21 (ENSCDRG00005015577)	H2AC20 (ENSCDRG00005015569)	ENSCDRG00005015337	ENSCDRG00005015322	ENSCDRG00005015313	ENSCDRG00005015303	ENSCDRG00005015297	H2BC18 (ENSCDRG00005015267)	FCGR1A (ENSCDRG00005015157)	ENSCDRG00005015110	ENSCDRG00005015029	HJV (ENSCDRG00005014941) #21	TXNIP (ENSCDRG00005014863) #22	POLR3GL (ENSCDRG00005014814)	ANKRD34A (ENSCDRG00005014782) #24	LIX1L (ENSCDRG00005014710) #25	RBM8A (ENSCDRG00005014616) #26	ENSCDRG00005014575	ITGA10 (ENSCDRG00005014118) #29	ANKRD35 (ENSCDRG00005013927) #30	PIAS3 (ENSCDRG00005013833) #31	ENSCDRG00005013752 #32	POLR3C (ENSCDRG00005013609) #33	ENSCDRG00005013563	RNF115 (ENSCDRG00005013518) #35	PDZK1 (ENSCDRG00005013431) #36	ENSCDRG00005013364 #37	GJA8 (ENSCDRG00005013341)
Alpaca	MODERN SPECIES	1818															ENSVPAG00000010596 #21	TXNIP (ENSVPAG00000010604) #22	ENSVPAG00000010608	LIX1L (ENSVPAG00000010613) #25
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT01060000248528.a.b.a.a.a.b	ENSGT00940000164494	ENSGT01100000263569.a.b.b	ENSGT01100000263559.B	ENSGT00940000156302	ENSGT01100000263575.B.t.a.a.a	ENSGT01060000248528.b.jh.b	ENSGT01100000263514.A.e.a.a	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Cetacea	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.B	ENSGT00940000156302.m.b	ENSGT01100000263575.B.t.a.a.a.a.b	ENSGT01100000263575.B.t.a.a.a.a.a	ENSGT00940000156302.m.a	ENSGT01100000263506.a.e.a.a.a.a.a	ENSGT01060000248528.b.jh.b	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Odontoceti	ANCESTRAL SPECIES		ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.B	ENSGT00940000156302.m.a	ENSGT01100000263575.B.t.a.a.a.a.a	ENSGT01100000263575.B.t.a.a.a.a.b	ENSGT00940000156302.m.b	ENSGT01100000263559.A.f	ENSGT01100000263575.B.t.a.a.b	ENSGT01100000263506.a.e.b	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.B	ENSGT00940000156302.m.a.b	ENSGT01100000263575.B.t.a.a.a.a.a	ENSGT01100000263575.B.t.a.a.a.a.b	ENSGT00940000156302.m.b	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT00940000156302.m.b	ENSGT01100000263575.B.t.a.a.a.a.b	ENSGT01100000263575.B.t.a.a.a.a.a	ENSGT00940000156302.m.a.b	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT01010000228887	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.t.a.a.b	ENSGT01100000263559.A.f	ENSGT01060000248528.b.jh.b	ENSGT01100000263506.a.e.a.a.a.a.a	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D	ENSGT01050000244864.C
Beluga whale	MODERN SPECIES	74															HFE2 (ENSDLEG00000012715) #21	TXNIP (ENSDLEG00000012701) #22	POLR3GL (ENSDLEG00000012685)	ANKRD34A (ENSDLEG00000012676) #24	LIX1L (ENSDLEG00000012639) #25	RBM8A (ENSDLEG00000012623) #26	PEX11B (ENSDLEG00000012605) #28	ITGA10 (ENSDLEG00000012223) #29	ANKRD35 (ENSDLEG00000012160) #30	PIAS3 (ENSDLEG00000012119) #31	NUDT17 (ENSDLEG00000012106) #32	POLR3C (ENSDLEG00000012058) #33	RNF115 (ENSDLEG00000012048) #35	PDZK1 (ENSDLEG00000012026) #36	ENSDLEG00000012011 #37	GJA8 (ENSDLEG00000012004)	GJA5 (ENSDLEG00000012001)
Narwhal	MODERN SPECIES	304	MTMR11 (ENSMMNG00015000420)	SF3B4 (ENSMMNG00015000508)	SV2A (ENSMMNG00015000538)	BOLA1 (ENSMMNG00015000565)	H2AC21 (ENSMMNG00015000574)	H2AC20 (ENSMMNG00015000583)	ENSMMNG00015000589	ENSMMNG00015000597	ENSMMNG00015000609	ENSMMNG00015000624	H3C13 (ENSMMNG00015000641)	H2BC18 (ENSMMNG00015000651)	ENSMMNG00015000669	ENSMMNG00015000699	HJV (ENSMMNG00015000764) #21	TXNIP (ENSMMNG00015000791) #22	ENSMMNG00015000840	ANKRD34A (ENSMMNG00015000874) #24	LIX1L (ENSMMNG00015000890) #25	RBM8A (ENSMMNG00015000918) #26	PEX11B (ENSMMNG00015000972) #28	ITGA10 (ENSMMNG00015001059) #29	ANKRD35 (ENSMMNG00015001213) #30	PIAS3 (ENSMMNG00015001315) #31	NUDT17 (ENSMMNG00015001410) #32	POLR3C (ENSMMNG00015001448) #33	RNF115 (ENSMMNG00015001502) #35	PDZK1 (ENSMMNG00015001570) #36	ENSMMNG00015001615 #37	GJA8 (ENSMMNG00015001638)	GJA5 (ENSMMNG00015001644)
Vaquita	MODERN SPECIES		BOLA1 (ENSPSNG00000001237)	H2AC21 (ENSPSNG00000001218)	H2AC20 (ENSPSNG00000001208)	H2BC21 (ENSPSNG00000001199)	ENSPSNG00000001182	ENSPSNG00000001168	ENSPSNG00000001160	ENSPSNG00000001148	ENSPSNG00000001132	ENSPSNG00000001122	H3-7 (ENSPSNG00000001054)	H2BC18 (ENSPSNG00000001038)	ENSPSNG00000001015	ENSPSNG00000000971	HJV (ENSPSNG00000000911) #21	TXNIP (ENSPSNG00000000878) #22	POLR3GL (ENSPSNG00000000850)	ANKRD34A (ENSPSNG00000000834) #24	LIX1L (ENSPSNG00000000812) #25	ENSPSNG00000000786	PEX11B (ENSPSNG00000000744) #28	ITGA10 (ENSPSNG00000000636) #29	ANKRD35 (ENSPSNG00000000537) #30	PIAS3 (ENSPSNG00000000478) #31	NUDT17 (ENSPSNG00000000422) #32	POLR3C (ENSPSNG00000000389) #33	RNF115 (ENSPSNG00000000340) #35	ENSPSNG00000000296	PDZK1 (ENSPSNG00000000251) #36	ENSPSNG00000000162 #37	GJA8 (ENSPSNG00000000089)
Dolphin	MODERN SPECIES	1720															HJV (ENSTTRG00000017111) #21	TXNIP (ENSTTRG00000017112) #22	ENSTTRG00000017113	ENSTTRG00000017115
Sperm whale	MODERN SPECIES	15	SF3B4 (ENSPCTG00005011142)	SV2A (ENSPCTG00005011188)	BOLA1 (ENSPCTG00005011392)	H2AC21 (ENSPCTG00005011410)	H2AC20 (ENSPCTG00005011425)	ENSPCTG00005011442	ENSPCTG00005011455	ENSPCTG00005011469	ENSPCTG00005011490	ENSPCTG00005011505	ENSPCTG00005011520	ENSPCTG00005011537	ENSPCTG00005011561	ENSPCTG00005011661	HJV (ENSPCTG00005011809) #21	TXNIP (ENSPCTG00005011915) #22	POLR3GL (ENSPCTG00005012074)	ENSPCTG00005012215 #24	ENSPCTG00005012232 #24	LIX1L (ENSPCTG00005012257) #25	RBM8A (ENSPCTG00005012300) #26	PEX11B (ENSPCTG00005012430) #28	ITGA10 (ENSPCTG00005012521) #29	POLR3C (ENSPCTG00005012859) #33	ENSPCTG00005012939 #35	ENSPCTG00005012998	PDZK1 (ENSPCTG00005013079) #36	GPR89A (ENSPCTG00005013307) #37	GJA8 (ENSPCTG00005013358)	GJA5 (ENSPCTG00005013373)	ACP6 (ENSPCTG00005013400)
Blue whale	MODERN SPECIES		BOLA1 (ENSBMSG00010003920)	H2AC21 (ENSBMSG00010003913)	H2AC20 (ENSBMSG00010003906)	H2BC21 (ENSBMSG00010003899)	ENSBMSG00010003894	ENSBMSG00010003888	ENSBMSG00010003885	ENSBMSG00010003880	ENSBMSG00010003874	ENSBMSG00010003866	ENSBMSG00010003857	ENSBMSG00010003847	H2BC18 (ENSBMSG00010003841)	ENSBMSG00010003827	HJV (ENSBMSG00010003805) #21	TXNIP (ENSBMSG00010003790) #22	POLR3GL (ENSBMSG00010003781)	ANKRD34A (ENSBMSG00010003767) #24	LIX1L (ENSBMSG00010003757) #25	RBM8A (ENSBMSG00010003752) #26	PEX11B (ENSBMSG00010003741) #28	ITGA10 (ENSBMSG00010003688) #29	NUDT17 (ENSBMSG00010003650) #32	ENSBMSG00010003614 #31	POLR3C (ENSBMSG00010003595) #33	ENSBMSG00010003585 #35	ENSBMSG00010003575	PDZK1 (ENSBMSG00010003562) #36	ENSBMSG00010003553 #37	GJA8 (ENSBMSG00010003547)	GJA5 (ENSBMSG00010003545)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT00940000156302	ENSGT01100000263474.a.b.a.d	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT00940000156302	ENSGT01100000263474.a.b.a.d	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Bovidae	ANCESTRAL SPECIES	1	ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT00940000156302	ENSGT01100000263474.a.b.a.d	ENSGT01060000248528.a.b.a.a.a.b	ENSGT00940000164494	ENSGT01100000263569.a.b.b	ENSGT01100000263559.B	ENSGT01060000248528.b.jh.b	ENSGT01100000263514.A.e.a.a	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000160276	ENSGT00870000136537.i	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT00940000156302	ENSGT01100000263506.a.e.a.a.a.a.b.a	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Bos	ANCESTRAL SPECIES		ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537.i	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT01100000263575.B.u	ENSGT01100000263559.A.f	ENSGT00940000156302	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Bos_a	ANCESTRAL SPECIES	81											ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Wild yak	MODERN SPECIES	1010															HJV (ENSBMUG00000007305) #21	TXNIP (ENSBMUG00000007292) #22	POLR3GL (ENSBMUG00000007276)	ANKRD34A (ENSBMUG00000007260) #24	LIX1L (ENSBMUG00000007068) #25	RBM8A (ENSBMUG00000006964) #26	ENSBMUG00000006914 #27	PEX11B (ENSBMUG00000006890) #28	ITGA10 (ENSBMUG00000006839) #29	ANKRD35 (ENSBMUG00000006800) #30	PIAS3 (ENSBMUG00000006760) #31	NUDT17 (ENSBMUG00000006726) #32	POLR3C (ENSBMUG00000006719) #33	RNF115 (ENSBMUG00000006704) #35	PDZK1 (ENSBMUG00000006691) #36	ENSBMUG00000006661 #37	GJA8 (ENSBMUG00000006652)
Domestic yak	MODERN SPECIES	22	H2AC21 (ENSBGRG00000016349)	H2AC20 (ENSBGRG00000016331)	H2BC21 (ENSBGRG00000016302)	ENSBGRG00000016266	ENSBGRG00000016242	ENSBGRG00000016186	ENSBGRG00000016162	ENSBGRG00000016148	ENSBGRG00000016136	ENSBGRG00000016114	H2BC18 (ENSBGRG00000016034)	FCGR1A (ENSBGRG00000015945)	ENSBGRG00000015767	ENSBGRG00000015702	HJV (ENSBGRG00000015528) #21	TXNIP (ENSBGRG00000015334) #22	POLR3GL (ENSBGRG00000015249)	ANKRD34A (ENSBGRG00000015222) #24	LIX1L (ENSBGRG00000015160) #25	ENSBGRG00000014985 #26	ENSBGRG00000014804 #27	PEX11B (ENSBGRG00000014702) #28	ITGA10 (ENSBGRG00000013986) #29	ANKRD35 (ENSBGRG00000013826) #30	PIAS3 (ENSBGRG00000013646) #31	NUDT17 (ENSBGRG00000013601) #32	POLR3C (ENSBGRG00000013465) #33	RNF115 (ENSBGRG00000013406) #35	ENSBGRG00000013387	PDZK1 (ENSBGRG00000013265) #36	ENSBGRG00000012897 #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537.i	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.a	ENSGT00940000156302	ENSGT01100000263559.A.f	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01100000263480.a.a.a.b.a.b.b.a.b	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D
Hybrid Bos Indicus	MODERN SPECIES	22	OTUD7B (ENSBIXG00005025620)	MTMR11 (ENSBIXG00005004349)	ENSBIXG00005004342	SV2A (ENSBIXG00005025476)	ENSBIXG00005025435	H2AC20 (ENSBIXG00005025423)	ENSBIXG00005004318	H3-7 (ENSBIXG00005025404)	ENSBIXG00005004313	H2BC18 (ENSBIXG00005025377)	FCGR1A (ENSBIXG00005025364)	ENSBIXG00005025348	ENSBIXG00005025317	ENSBIXG00005025301	HJV (ENSBIXG00005006687) #21	TXNIP (ENSBIXG00005025179) #22	POLR3GL (ENSBIXG00005025127)	ANKRD34A (ENSBIXG00005025105) #24	ENSBIXG00005025081 #26	ENSBIXG00005025011 #27	ITGA10 (ENSBIXG00005004255) #29	ANKRD35 (ENSBIXG00005024727) #30	ENSBIXG00005004206	PIAS3 (ENSBIXG00005024590) #31	NUDT17 (ENSBIXG00005024499) #32	POLR3C (ENSBIXG00005024477) #33	PDZK1 (ENSBIXG00005024420) #36	ENSBIXG00005024308	ENSBIXG00005024260 #37	GJA8 (ENSBIXG00005004114)	GJA5 (ENSBIXG00005024004)
Cow	MODERN SPECIES	22	SF3B4 (ENSBTAG00000012495)	SV2A (ENSBTAG00000001599)	BOLA1 (ENSBTAG00000006050)	H2AC20 (ENSBTAG00000040098)	H2AC21 (ENSBTAG00000032456)	ENSBTAG00000050122	H2AC19 (ENSBTAG00000046003)	H4C14 (ENSBTAG00000032453)	H2AC18 (ENSBTAG00000038476)	H3C13 (ENSBTAG00000050881)	H2BC18 (ENSBTAG00000032455)	FCGR1A (ENSBTAG00000008592)	ENSBTAG00000037565	MGC134040 (ENSBTAG00000022741)	HJV (ENSBTAG00000021823) #21	TXNIP (ENSBTAG00000020060) #22	POLR3GL (ENSBTAG00000013910)	ANKRD34A (ENSBTAG00000008365) #24	RBM8A (ENSBTAG00000008369) #26	GNRHR2 (ENSBTAG00000008370) #27	PEX11B (ENSBTAG00000008372) #28	ITGA10 (ENSBTAG00000008373) #29	ANKRD35 (ENSBTAG00000038844) #30	ENSBTAG00000052421	PIAS3 (ENSBTAG00000021634) #31	NUDT17 (ENSBTAG00000021635) #32	POLR3C (ENSBTAG00000021637) #33	RNF115 (ENSBTAG00000008131) #35	ENSBTAG00000053114	PDZK1 (ENSBTAG00000005810) #36	GPR89A (ENSBTAG00000005809) #37
American bison	MODERN SPECIES	2744															HJV (ENSBBBG00000014737) #21	TXNIP (ENSBBBG00000014714) #22	POLR3GL (ENSBBBG00000014682)	ANKRD34A (ENSBBBG00000014633) #24	LIX1L (ENSBBBG00000014620) #25
Caprinae	ANCESTRAL SPECIES	2	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537.i	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153118.db.a.a.b.a.a	ENSGT01100000263575.B.u	ENSGT01100000263559.B	ENSGT01100000263506.a.e.b	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b	ENSGT00420000029746.f	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37	ENSGT01050000244864.D	ENSGT01050000244864.C
Rambouillet Sheep	MODERN SPECIES		HIST2H2BE (ENSOARG00020006877)	ENSOARG00020006850	ENSOARG00020006832	ENSOARG00020006810	ENSOARG00020006796	ENSOARG00020006772	ENSOARG00020006745	ENSOARG00020006725	H3-7 (ENSOARG00020006703)	H2BC18 (ENSOARG00020006656)	FCGR1A (ENSOARG00020006588)	ENSOARG00020006514	ENSOARG00020006487	ENSOARG00020006466	HJV (ENSOARG00020004031) #21	TXNIP (ENSOARG00020003962) #22	POLR3GL (ENSOARG00020003936)	ANKRD34A (ENSOARG00020003925) #24	LIX1L (ENSOARG00020003889) #25	RBM8A (ENSOARG00020003860) #26	PEX11B (ENSOARG00020003815) #28	ITGA10 (ENSOARG00020003429) #29	PIAS3 (ENSOARG00020003167) #31	NUDT17 (ENSOARG00020003144) #32	POLR3C (ENSOARG00020003118) #33	RNF115 (ENSOARG00020003086) #35	PDZK1 (ENSOARG00020003047) #36	ENSOARG00020003006 #37	GJA8 (ENSOARG00020002990)	GJA5 (ENSOARG00020002982)	ACP6 (ENSOARG00020002966)
Goat	MODERN SPECIES	22	H2AC20 (ENSCHIG00000010392)	H2BC21 (ENSCHIG00000012955)	ENSCHIG00000010054	ENSCHIG00000022263	ENSCHIG00000007823	ENSCHIG00000013722	ENSCHIG00000008044	ENSCHIG00000013241	ENSCHIG00000009699	ENSCHIG00000010234	H2BC18 (ENSCHIG00000007673)	FCGR1A (ENSCHIG00000027141)	ENSCHIG00000017683	ENSCHIG00000023415	HJV (ENSCHIG00000010408) #21	TXNIP (ENSCHIG00000017689) #22	POLR3GL (ENSCHIG00000008824)	ANKRD34A (ENSCHIG00000007942) #24	LIX1L (ENSCHIG00000012584) #25	RBM8A (ENSCHIG00000012114) #26	ITGA10 (ENSCHIG00000027027) #29	ANKRD35 (ENSCHIG00000018547) #30	PIAS3 (ENSCHIG00000010071) #31	NUDT17 (ENSCHIG00000014413) #32	POLR3C (ENSCHIG00000022431) #33	RNF115 (ENSCHIG00000025502) #35	PDZK1 (ENSCHIG00000011722) #36	ENSCHIG00000017806 #37	GJA5 (ENSCHIG00000010714)	ENSCHIG00000018629	ACP6 (ENSCHIG00000024823)
Siberian musk deer	MODERN SPECIES	1200															HJV (ENSMMSG00000013233) #21	TXNIP (ENSMMSG00000013265) #22	POLR3GL (ENSMMSG00000013299)	ANKRD34A (ENSMMSG00000013322) #24	LIX1L (ENSMMSG00000016821) #25	RBM8A (ENSMMSG00000016842) #26	ENSMMSG00000016863 #27	PEX11B (ENSMMSG00000016907) #28	ITGA10 (ENSMMSG00000016987) #29	ANKRD35 (ENSMMSG00000017135) #30	PIAS3 (ENSMMSG00000017229) #31	NUDT17 (ENSMMSG00000017338) #32	POLR3C (ENSMMSG00000017384) #33	RNF115 (ENSMMSG00000017432) #35	PDZK1 (ENSMMSG00000017466) #36	ENSMMSG00000017716 #37	ENSMMSG00000017763
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000014343	MTMR11 (ENSCHYG00000014428)	ENSCHYG00000014732	SV2A (ENSCHYG00000014801)	BOLA1 (ENSCHYG00000014998)	H2AC21 (ENSCHYG00000015023)	H2AC20 (ENSCHYG00000015051)	H2BC21 (ENSCHYG00000015088)	ENSCHYG00000015117	H3-7 (ENSCHYG00000015151)	H2BC18 (ENSCHYG00000015177)	ENSCHYG00000015246	FCGR1A (ENSCHYG00000015523)	ENSCHYG00000015606	HJV (ENSCHYG00000015634) #21	TXNIP (ENSCHYG00000015719) #22	POLR3GL (ENSCHYG00000015898)	ANKRD34A (ENSCHYG00000015933) #24	LIX1L (ENSCHYG00000015993) #25	RBM8A (ENSCHYG00000016090) #26	PEX11B (ENSCHYG00000004579) #28	ITGA10 (ENSCHYG00000004850) #29	ANKRD35 (ENSCHYG00000004968) #30	PIAS3 (ENSCHYG00000005027) #31	NUDT17 (ENSCHYG00000005077) #32	POLR3C (ENSCHYG00000005139) #33	RNF115 (ENSCHYG00000005206) #35	PDZK1 (ENSCHYG00000005304) #36	ENSCHYG00000005393 #37	GJA8 (ENSCHYG00000005455)	GJA5 (ENSCHYG00000005464)
Atlantogenata	ANCESTRAL SPECIES	117															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263883	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00940000174226	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36
Xenarthra	ANCESTRAL SPECIES	261															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263883	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36
Armadillo	MODERN SPECIES	4158														ENSDNOG00000034450	HJV (ENSDNOG00000039654) #21	TXNIP (ENSDNOG00000038212) #22	ENSDNOG00000016011	ANKRD34A (ENSDNOG00000048350) #24	LIX1L (ENSDNOG00000034222) #25	PEX11B (ENSDNOG00000025467) #28	ITGA10 (ENSDNOG00000016024) #29	ANKRD35 (ENSDNOG00000040291) #30	PIAS3 (ENSDNOG00000010958) #31	NUDT17 (ENSDNOG00000016299) #32	POLR3C (ENSDNOG00000012149) #33	ENSDNOG00000044139	RNF115 (ENSDNOG00000035217) #35	CD160 (ENSDNOG00000036112)	ENSDNOG00000000375 #36
Afrotheria	ANCESTRAL SPECIES	146															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165856	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00940000174226	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684.d #37
Tenrec	MODERN SPECIES	17840															HJV (ENSETEG00000019540) #21	TXNIP (ENSETEG00000019542) #22
Afrotheria_a	ANCESTRAL SPECIES	148															ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165856	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT00940000174226	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684.d #37
Elephant	MODERN SPECIES	67															HJV (ENSLAFG00000023384) #21	TXNIP (ENSLAFG00000011010) #22	ENSLAFG00000011013	LIX1L (ENSLAFG00000011028) #25	ENSLAFG00000011031 #26	ENSLAFG00000021886 #26	ENSLAFG00000016093 #27	PEX11B (ENSLAFG00000030003) #28	ITGA10 (ENSLAFG00000029411) #29	ANKRD35 (ENSLAFG00000032168) #30	PIAS3 (ENSLAFG00000008326) #31	NUDT17 (ENSLAFG00000008330) #32	POLR3C (ENSLAFG00000029485) #33	RNF115 (ENSLAFG00000008332) #35	CD160 (ENSLAFG00000008333)	PDZK1 (ENSLAFG00000028525) #36	ENSLAFG00000012258 #37
Hyrax	MODERN SPECIES	10602																TXNIP (ENSPCAG00000006503) #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Opossum	MODERN SPECIES	1	MTMR11 (ENSMODG00000018769)	SF3B4 (ENSMODG00000018767)	SV2A (ENSMODG00000018766)	ENSMODG00000044619	ENSMODG00000049030	ENSMODG00000050604	ENSMODG00000043839	ENSMODG00000036508	HIST1H4I (ENSMODG00000044293)	HIST1H4I (ENSMODG00000046729)	HIST1H4I (ENSMODG00000045825)	HIST1H4I (ENSMODG00000043804)	HIST1H4I (ENSMODG00000037943)	ENSMODG00000038666	HJV (ENSMODG00000018756) #21	TXNIP (ENSMODG00000018755) #22	ENSMODG00000018754	ANKRD34A (ENSMODG00000023216) #24	LIX1L (ENSMODG00000018753) #25	RBM8A (ENSMODG00000047652) #26	ENSMODG00000018751 #27	PEX11B (ENSMODG00000018750) #28	ITGA10 (ENSMODG00000018749) #29	ANKRD35 (ENSMODG00000018748) #30	PIAS3 (ENSMODG00000018747) #31	NUDT17 (ENSMODG00000046405) #32	POLR3C (ENSMODG00000018745) #33	RNF115 (ENSMODG00000018741) #35	PDZK1 (ENSMODG00000018744) #36	ENSMODG00000018742 #37	GJA8 (ENSMODG00000023218)
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT01100000263506.a.f	ENSGT00940000153118.db.a.a.b.a.b	ENSGT00940000153125.F	ENSGT01100000263575.B.f	ENSGT01100000263559.A.f	ENSGT00940000153092.a.a.b	ENSGT01100000263575.B.e.b	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00730000111185 #26	ENSGT01050000244841.A.a.b #27	ENSGT00390000014273.b #28	ENSGT00940000158423 #29	ENSGT00530000063074.a #30	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00390000013847 #32	ENSGT00390000002799 #33	ENSGT00940000157203 #35	ENSGT00390000007258	ENSGT00950000182849.A.f.b #36	ENSGT00390000000684 #37
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1007	ENSVURG00010001177	ENSVURG00010001199	ENSVURG00010001206	ENSVURG00010001221	ENSVURG00010001308	ENSVURG00010001317	ENSVURG00010001341	ENSVURG00010001350	ENSVURG00010001356	ENSVURG00010001364	ENSVURG00010001372	ENSVURG00010001379	ENSVURG00010001381	ENSVURG00010001404 #21	ENSVURG00010001436	ENSVURG00010001444 #22	ENSVURG00010001469	ENSVURG00010001489 #24	ENSVURG00010001495 #25	ENSVURG00010001505 #26	ENSVURG00010001549 #27	ENSVURG00010001568 #28	ENSVURG00010001598 #29	ENSVURG00010001727 #30	ENSVURG00010001797 #31	ENSVURG00010001831 #32	ENSVURG00010001862 #33	ENSVURG00010001900 #35	ENSVURG00010002115 #36	ENSVURG00010002135	ENSVURG00010002174 #37
Common wonbat	MODERN SPECIES	1007	ENSVURG00010015891	ENSVURG00010015897	ENSVURG00010015903	ENSVURG00010015906	ENSVURG00010015916	ENSVURG00010015924	ENSVURG00010015933	ENSVURG00010015942	ENSVURG00010015945	ENSVURG00010015953	ENSVURG00010015957	ENSVURG00010015963	ENSVURG00010015968	ENSVURG00010015977 #21	ENSVURG00010015984	ENSVURG00010015986 #22	ENSVURG00010015991	ENSVURG00010000347 #24	ENSVURG00010000365 #25	ENSVURG00010000395 #26	ENSVURG00010000426 #27	ENSVURG00010000520 #28	ENSVURG00010000542 #29	ENSVURG00010000664 #30	ENSVURG00010000700 #31	ENSVURG00010000740 #32	ENSVURG00010000779 #33	ENSVURG00010000866 #35	ENSVURG00010001024	ENSVURG00010001032 #36	ENSVURG00010001054 #37
koala	MODERN SPECIES	4	H2AC21 (ENSPCIG00000036441)	ENSPCIG00000008760	ENSPCIG00000037267	ENSPCIG00000036846	ENSPCIG00000036686	ENSPCIG00000019912	H1-5 (ENSPCIG00000034869)	ENSPCIG00000034324	ENSPCIG00000034490	ENSPCIG00000031998	ENSPCIG00000032472	ENSPCIG00000034427	ENSPCIG00000037192	ENSPCIG00000031302	HJV (ENSPCIG00000031042) #21	TXNIP (ENSPCIG00000011922) #22	POLR3GL (ENSPCIG00000011925)	ANKRD34A (ENSPCIG00000011927) #24	LIX1L (ENSPCIG00000011929) #25	RBM8A (ENSPCIG00000011931) #26	ENSPCIG00000011932 #27	PEX11B (ENSPCIG00000011934) #28	ITGA10 (ENSPCIG00000011936) #29	ENSPCIG00000030836	ANKRD35 (ENSPCIG00000011942) #30	PIAS3 (ENSPCIG00000011947) #31	NUDT17 (ENSPCIG00000011950) #32	POLR3C (ENSPCIG00000011954) #33	RNF115 (ENSPCIG00000011957) #35	ENSPCIG00000011960	PDZK1 (ENSPCIG00000027178) #36
Wallaby	MODERN SPECIES	2622																TXNIP (ENSMEUG00000002416) #22
Tasmanian devil	MODERN SPECIES	3	CA14 (ENSSHAG00000009010)	ANP32E (ENSSHAG00000021363)	PLEKHO1 (ENSSHAG00000026260)	VPS45 (ENSSHAG00000006633)	OTUD7B (ENSSHAG00000028863)	SV2A (ENSSHAG00000003476)	ENSSHAG00000003341	ENSSHAG00000026594	ENSSHAG00000022199	ENSSHAG00000030611	ENSSHAG00000030311	ENSSHAG00000021618	ENSSHAG00000023786	ENSSHAG00000026887	ENSSHAG00000027828 #21	TXNIP (ENSSHAG00000018655) #22	ENSSHAG00000029517	ANKRD34A (ENSSHAG00000018639) #24	LIX1L (ENSSHAG00000026388) #25	RBM8A (ENSSHAG00000018629) #26	ENSSHAG00000018624 #27	PEX11B (ENSSHAG00000018619) #28	ITGA10 (ENSSHAG00000018604) #29	ANKRD35 (ENSSHAG00000018583) #30	PIAS3 (ENSSHAG00000018577) #31	NUDT17 (ENSSHAG00000018575) #32	POLR3C (ENSSHAG00000018565) #33	RNF115 (ENSSHAG00000018525) #35	ENSSHAG00000018452 #36	ENSSHAG00000018415 #37	GJA8 (ENSSHAG00000018387)
Platypus	MODERN SPECIES	88	ENSA (ENSOANG00000045744)	ENSOANG00000042673	ENSOANG00000039301	ENSOANG00000049931	PRPF3 (ENSOANG00000036562)	MRPS21 (ENSOANG00000050148)	ENSOANG00000038721	APH1A (ENSOANG00000043325)	ENSOANG00000039352	ENSOANG00000045338	PLEKHO1 (ENSOANG00000041629)	ENSOANG00000003375	MTMR11 (ENSOANG00000040114)	ENSOANG00000037391	HJV (ENSOANG00000040602) #21	TXNIP (ENSOANG00000041306) #22	ENSOANG00000040128	ENSOANG00000043050 #24	ENSOANG00000043928 #25	PEX11B (ENSOANG00000040317) #28	ITGA10 (ENSOANG00000046912) #29	ANKRD35 (ENSOANG00000021904) #30	PIAS3 (ENSOANG00000040422) #31	ENSOANG00000038849	RNF115 (ENSOANG00000036987) #35	ENSOANG00000047977	ENSOANG00000034161	ENSOANG00000049515	ENSOANG00000039089	ENSOANG00000050560	ARHGEF11 (ENSOANG00000038766)
Sauria	ANCESTRAL SPECIES	28	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000161215	ENSGT00950000186203	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00950000185785	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30
Lepidosauria	ANCESTRAL SPECIES	36	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000161215	ENSGT00950000186203	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01060000248645	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT01030000234534.B.a.a.b
tuatara	MODERN SPECIES	1930	APH1A (ENSSPUG00000000880)	GOT2 (ENSSPUG00000000897)	ENSSPUG00000000905	ANP32E (ENSSPUG00000000918)	PLEKHO1 (ENSSPUG00000000927)	VPS45 (ENSSPUG00000000947)	OTUD7B (ENSSPUG00000000961)	MTMR11 (ENSSPUG00000000998)	ENSSPUG00000001025	SF3B4 (ENSSPUG00000001028)	SV2A (ENSSPUG00000001040)	BOLA1 (ENSSPUG00000001195)	ENSSPUG00000001204	ENSSPUG00000001218	ENSSPUG00000001224	TXNIP (ENSSPUG00000001302) #22	POLR3GL (ENSSPUG00000001305)	ANKRD34A (ENSSPUG00000001325) #24	ENSSPUG00000001354 #27	RBM8A (ENSSPUG00000001576) #26	LIX1L (ENSSPUG00000001586) #25	PEX11B (ENSSPUG00000001598) #28	ENSSPUG00000001627	ITGA10 (ENSSPUG00000001665) #29	RNF115 (ENSSPUG00000001822) #35	POLR3C (ENSSPUG00000001834) #33	NUDT17 (ENSSPUG00000001888) #32	PIAS3 (ENSSPUG00000001929) #31	ENSSPUG00000002083	ARHGEF2 (ENSSPUG00000002103)	SSR2 (ENSSPUG00000002144)
Episquamata	ANCESTRAL SPECIES	37																ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33
Laterata	ANCESTRAL SPECIES	61	ENSGT00390000011180	ENSGT00390000007071	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272	ENSGT00390000011582	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00940000157535	ENSGT00940000161411	ENSGT00940000157083	ENSGT00940000156392.b	ENSGT00940000159186	ENSGT00950000183007.b.i.a.b.e	ENSGT00950000183007.a.a.b.eb	ENSGT00940000154757.kb	ENSGT00940000158522 #22	ENSGT00940000165856	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33
Common wall lizard	MODERN SPECIES	7	EIF1AD (ENSPMRG00000017260)	SART1 (ENSPMRG00000017252)	DEDD (ENSPMRG00000017246)	NIT1 (ENSPMRG00000017237)	ENSPMRG00000017233	KLHDC9 (ENSPMRG00000017229)	ENSPMRG00000017221	ENSPMRG00000017215	NECTIN4 (ENSPMRG00000017198)	ARHGAP30 (ENSPMRG00000017179)	USF1 (ENSPMRG00000017169)	ENSPMRG00000017165	F11R (ENSPMRG00000017163)	ENSPMRG00000017160	ENSPMRG00000017154	TXNIP (ENSPMRG00000017147) #22	ENSPMRG00000017140	ENSPMRG00000017137	ENSPMRG00000017132	ANKRD34A (ENSPMRG00000017128) #24	ENSPMRG00000017125 #27	RBM8A (ENSPMRG00000017123) #26	ENSPMRG00000017120	LIX1L (ENSPMRG00000017117) #25	PEX11B (ENSPMRG00000017106) #28	ENSPMRG00000017101	ENSPMRG00000017097	ARHGEF2 (ENSPMRG00000017077)	ENSPMRG00000017067	ANKRD35 (ENSPMRG00000017060) #30	PIAS3 (ENSPMRG00000017047) #31
Argentine black and white tegu	MODERN SPECIES	186	ANKRD35 (ENSSMRG00000013712) #30	ENSSMRG00000013713	RXFP4 (ENSSMRG00000013714)	ARHGEF2 (ENSSMRG00000013715)	ITLN1 (ENSSMRG00000013729)	ENSSMRG00000013731	ENSSMRG00000013734	SMG5 (ENSSMRG00000013737)	TMEM79 (ENSSMRG00000013742)	ENSSMRG00000013758	NECTIN4 (ENSSMRG00000013760)	ARHGAP30 (ENSSMRG00000013762)	USF1 (ENSSMRG00000013767)	ENSSMRG00000013771	F11R (ENSSMRG00000013772)	TXNIP (ENSSMRG00000013775) #22	ENSSMRG00000013777	ANKRD34A (ENSSMRG00000013779) #24	ENSSMRG00000013782 #27	RBM8A (ENSSMRG00000013866) #26	LIX1L (ENSSMRG00000013870) #25	PEX11B (ENSSMRG00000013871) #28	ENSSMRG00000013872	ENSSMRG00000013873	ITGA10 (ENSSMRG00000013874) #29
Toxicofera	ANCESTRAL SPECIES	52					ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a	ENSGT00940000161170	ENSGT00940000154876.b	ENSGT00950000183007.b.i.a.b	ENSGT00950000183007.a.a.b.eb	ENSGT00940000154757	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00390000017697.a	ENSGT00940000159819	ENSGT00950000182965.a.b.b.a
Elapidae	ANCESTRAL SPECIES	41											ENSGT00940000157535	ENSGT00940000161411	ENSGT00940000157083	ENSGT00940000159186	ENSGT00940000154757	ENSGT00940000158522 #22	ENSGT00930000151054	ENSGT01030000234517.G.e	ENSGT00940000158249	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00390000011582	ENSGT00390000009272	ENSGT00550000075099	ENSGT00390000008714.a	ENSGT00390000007071	ENSGT00390000011180	ENSGT00940000164681	ENSGT00390000018613.b	ENSGT00640000091486.a	ENSGT00510000048151	ENSGT00940000155451.s
Elapidae_a	ANCESTRAL SPECIES	281															ENSGT00940000154757	ENSGT00940000158522 #22
Acanthophiinae	ANCESTRAL SPECIES	81															ENSGT00940000154757	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00930000151054	ENSGT01030000234517.G.e	ENSGT00940000158249	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00390000011582	ENSGT00390000009272	ENSGT00550000075099	ENSGT00390000008714.a	ENSGT00390000011180	ENSGT00940000164681	ENSGT00390000018613.b	ENSGT00640000091486.a
Eastern brown snake	MODERN SPECIES	96				ENSPTXG00000014990	ENSPTXG00000014991	RASGRP2 (ENSPTXG00000014992)	PYGM (ENSPTXG00000015001)	SF1 (ENSPTXG00000015149)	MAP4K2 (ENSPTXG00000015284)	MEN1 (ENSPTXG00000015285)	ENSPTXG00000015289	SIPA1 (ENSPTXG00000015294)	PCNX3 (ENSPTXG00000015297)	MAP3K11 (ENSPTXG00000015336)	ITLN1 (ENSPTXG00000015339)	TXNIP (ENSPTXG00000015340) #22	ENSPTXG00000015341	ANKRD34A (ENSPTXG00000015342) #24	ENSPTXG00000015344 #27	SCYL1 (ENSPTXG00000015352)	CDC42BPG (ENSPTXG00000015353)	EHD1 (ENSPTXG00000015354)	ENSPTXG00000015355	ENSPTXG00000015356	ENSPTXG00000015360	PFDN2 (ENSPTXG00000015361)	NIT1 (ENSPTXG00000015362)	DEDD (ENSPTXG00000015394)	EIF1AD (ENSPTXG00000015395)	ENSPTXG00000015396	BANF1 (ENSPTXG00000015398)
Mainland tiger snake	MODERN SPECIES	356																TXNIP (ENSNSUG00000005432) #22	ENSNSUG00000005448	ANKRD34A (ENSNSUG00000005449) #24	ENSNSUG00000005450 #27	ENSNSUG00000005465	ENSNSUG00000005466	ENSNSUG00000005467	ENSNSUG00000005468	EHD1 (ENSNSUG00000005472)	ENSNSUG00000005473	ENSNSUG00000005475	KLHDC9 (ENSNSUG00000005476)	PFDN2 (ENSNSUG00000005477)
Blue-lipped sea krait	MODERN SPECIES	2800															ITLN1 (ENSLLTG00000000172)	TXNIP (ENSLLTG00000011972) #22
Indian cobra	MODERN SPECIES	17	ENSNNAG00000005002	ENSNNAG00000004831	ENSNNAG00000004777	ARL2 (ENSNNAG00000004763)	SNX15 (ENSNNAG00000004743)	ENSNNAG00000004725	ENSNNAG00000004703	GPHA2 (ENSNNAG00000004684)	PPP2R5B (ENSNNAG00000004617)	ENSNNAG00000004593	ENSNNAG00000004581	ENSNNAG00000004560	USF1 (ENSNNAG00000004502)	IRGC (ENSNNAG00000004477)	ITLN1 (ENSNNAG00000004442)	TXNIP (ENSNNAG00000004423) #22	ENSNNAG00000004397	ANKRD34A (ENSNNAG00000004391) #24	ENSNNAG00000004304 #27	ENSNNAG00000004270	ENSNNAG00000004253	EHD1 (ENSNNAG00000004228)	ENSNNAG00000004198	ENSNNAG00000004159	KLHDC9 (ENSNNAG00000004132)	PFDN2 (ENSNNAG00000004112)	NIT1 (ENSNNAG00000004091)	DEDD (ENSNNAG00000004063)	SART1 (ENSNNAG00000004013)	EIF1AD (ENSNNAG00000003951)	ENSNNAG00000003922
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01000000215168	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000161215.hc.a	ENSGT00950000186203	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00950000185785	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01000000215168.a.b.b	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00390000012412	ENSGT00940000154813	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT00530000063712.a.a	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00950000185785	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01010000223749.c	ENSGT01000000215168.a.a.a.b	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000161215.hc.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00950000185785	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01010000223749.c	ENSGT01000000215168.a.a.a.a	ENSGT01000000215168.a.b.b	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT01030000234534.B.a.a.b
Goode s thornscrub tortoise	MODERN SPECIES	16	ENSGEVG00005013683	ENSGEVG00005013639	ENSGEVG00005013610	ANP32E (ENSGEVG00005013581)	PLEKHO1 (ENSGEVG00005013486)	VPS45 (ENSGEVG00005013432)	OTUD7B (ENSGEVG00005013347)	MTMR11 (ENSGEVG00005013232)	SF3B4 (ENSGEVG00005013192)	ENSGEVG00005013115	ENSGEVG00005013087	BOLA1 (ENSGEVG00005013064)	ENSGEVG00005012931	ENSGEVG00005012816	HJV (ENSGEVG00005012744) #21	TXNIP (ENSGEVG00005012717) #22	ENSGEVG00005012685	ANKRD34A (ENSGEVG00005012643) #24	ENSGEVG00005012351 #27	RBM8A (ENSGEVG00005012278) #26	LIX1L (ENSGEVG00005012253) #25	PEX11B (ENSGEVG00005012234) #28	ENSGEVG00005012211	ENSGEVG00005012138	ITGA10 (ENSGEVG00005011912) #29	RNF115 (ENSGEVG00005011822) #35	POLR3C (ENSGEVG00005017684) #33	NUDT17 (ENSGEVG00005017632) #32	PIAS3 (ENSGEVG00005017589) #31	ANKRD35 (ENSGEVG00005017285) #30	RXFP4 (ENSGEVG00005017219)
Abingdon island giant tortoise	MODERN SPECIES	1671	ENSCABG00000018478	ENSCABG00000018477	ENSCABG00000018475	ENSCABG00000018474	ANP32E (ENSCABG00000018473)	PLEKHO1 (ENSCABG00000018472)	VPS45 (ENSCABG00000018470)	OTUD7B (ENSCABG00000018370)	MTMR11 (ENSCABG00000018355)	SF3B4 (ENSCABG00000018354)	SV2A (ENSCABG00000018335)	BOLA1 (ENSCABG00000018334)	ENSCABG00000018333	ENSCABG00000018329	HJV (ENSCABG00000018327) #21	TXNIP (ENSCABG00000018325) #22	ENSCABG00000018323	ANKRD34A (ENSCABG00000018322) #24	ENSCABG00000018313 #27	RBM8A (ENSCABG00000018312) #26	LIX1L (ENSCABG00000018310) #25	PEX11B (ENSCABG00000018308) #28	ENSCABG00000018306	ITGA10 (ENSCABG00000018305) #29	RNF115 (ENSCABG00000018303) #35	POLR3C (ENSCABG00000018302) #33	NUDT17 (ENSCABG00000018301) #32	PIAS3 (ENSCABG00000018299) #31	ANKRD35 (ENSCABG00000018298) #30	ENSCABG00000018296	RXFP4 (ENSCABG00000018295)
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01010000223749.c	ENSGT01000000215168.a.a.a.b	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000161215.hc.a	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165934	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00950000185785	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30
painted turtle	MODERN SPECIES	738	ENSCPBG00000008141	ENSCPBG00000008136	ENSCPBG00000008128	ANP32E (ENSCPBG00000008122)	PLEKHO1 (ENSCPBG00000008118)	VPS45 (ENSCPBG00000008102)	OTUD7B (ENSCPBG00000008074)	MTMR11 (ENSCPBG00000008053)	SF3B4 (ENSCPBG00000008041)	SV2A (ENSCPBG00000008024)	BOLA1 (ENSCPBG00000008019)	ENSCPBG00000008009	ENSCPBG00000007997	HJV (ENSCPBG00000007987) #21	ENSCPBG00000007978	TXNIP (ENSCPBG00000007972) #22	ENSCPBG00000007959	ANKRD34A (ENSCPBG00000007952) #24	ENSCPBG00000007948 #27	RBM8A (ENSCPBG00000007941) #26	LIX1L (ENSCPBG00000007937) #25	PEX11B (ENSCPBG00000007934) #28	ENSCPBG00000007924	ENSCPBG00000007920	ENSCPBG00000007912	ITGA10 (ENSCPBG00000007907) #29	RNF115 (ENSCPBG00000007896) #35	POLR3C (ENSCPBG00000007883) #33	NUDT17 (ENSCPBG00000007873) #32	PIAS3 (ENSCPBG00000007837) #31	ANKRD35 (ENSCPBG00000007806) #30
Three-toed box turtle	MODERN SPECIES	102	ENSTMTG00000003596	APH1A (ENSTMTG00000003583)	ENSTMTG00000003565	ENSTMTG00000003550	ANP32E (ENSTMTG00000003525)	PLEKHO1 (ENSTMTG00000003484)	VPS45 (ENSTMTG00000003440)	OTUD7B (ENSTMTG00000003400)	MTMR11 (ENSTMTG00000003371)	SF3B4 (ENSTMTG00000003355)	SV2A (ENSTMTG00000003281)	BOLA1 (ENSTMTG00000003267)	ENSTMTG00000003234	ENSTMTG00000003216	HJV (ENSTMTG00000003210) #21	TXNIP (ENSTMTG00000003202) #22	ENSTMTG00000003193	ANKRD34A (ENSTMTG00000003181) #24	ENSTMTG00000003085 #27	RBM8A (ENSTMTG00000003055) #26	LIX1L (ENSTMTG00000021264) #25	PEX11B (ENSTMTG00000021263) #28	ENSTMTG00000021259	ENSTMTG00000021255	ITGA10 (ENSTMTG00000021222) #29	RNF115 (ENSTMTG00000021211) #35	POLR3C (ENSTMTG00000021195) #33	NUDT17 (ENSTMTG00000021186) #32	PIAS3 (ENSTMTG00000021168) #31	ANKRD35 (ENSTMTG00000021116) #30	RXFP4 (ENSTMTG00000021106)
Chinese turtle	MODERN SPECIES	2004					ENSPSIG00000006622	ANP32E (ENSPSIG00000006633)	PLEKHO1 (ENSPSIG00000007572)	VPS45 (ENSPSIG00000007804)	OTUD7B (ENSPSIG00000008867)	MTMR11 (ENSPSIG00000009497)	SF3B4 (ENSPSIG00000009565)	SV2A (ENSPSIG00000009662)	ENSPSIG00000009818	ENSPSIG00000010036	HJV (ENSPSIG00000010052) #21	TXNIP (ENSPSIG00000010332) #22	ENSPSIG00000010726	ANKRD34A (ENSPSIG00000010887) #24	ENSPSIG00000011039 #27	LIX1L (ENSPSIG00000011046) #25	PEX11B (ENSPSIG00000011074) #28
Archosauria	ANCESTRAL SPECIES	36	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01000000215168	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT00940000158341
Australian saltwater crocodile	MODERN SPECIES	15					ANP32E (ENSCPRG00005009121)	PLEKHO1 (ENSCPRG00005009120)	VPS45 (ENSCPRG00005009111)	OTUD7B (ENSCPRG00005009099)	MTMR11 (ENSCPRG00005009090)	SF3B4 (ENSCPRG00005009082)	SV2A (ENSCPRG00005008968)	BOLA1 (ENSCPRG00005008944)	ENSCPRG00005008941	ENSCPRG00005008916	HJV (ENSCPRG00005008913) #21	TXNIP (ENSCPRG00005008906) #22	ENSCPRG00005008900	ANKRD34A (ENSCPRG00005008897) #24	ENSCPRG00005008895 #27	RBM8A (ENSCPRG00005008893) #26	ENSCPRG00005008878	KIRREL1 (ENSCPRG00005008858)	ENSCPRG00005008850	ENSCPRG00005008847	ENSCPRG00005008845	ETV3 (ENSCPRG00005008842)	ETV3L (ENSCPRG00005008826)	ENSCPRG00005008814	ARHGEF11 (ENSCPRG00005008235)	ENSCPRG00005008107	NTRK1 (ENSCPRG00005008092)
Aves	ANCESTRAL SPECIES	36	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01000000215168	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT00940000158341
African ostrich	MODERN SPECIES	95													ENSSCUG00000000242	SF3B4 (ENSSCUG00000000241)	HJV (ENSSCUG00000000239) #21	TXNIP (ENSSCUG00000000238) #22
Neognathae	ANCESTRAL SPECIES	28	ENSGT00940000166610	ENSGT00940000164936	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01000000215168	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT00940000158341
Neognathae_b	ANCESTRAL SPECIES	34	ENSGT00940000164936	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01000000215168	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00950000186203	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT00940000158341	ENSGT00940000155176
Passeriformes	ANCESTRAL SPECIES	36	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000164936	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00950000183112.b.b #21	ENSGT00950000186203	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000157203.f #35	ENSGT00390000002799 #33
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00950000183112.b.b #21	ENSGT00950000186203	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000157203.f #35	ENSGT00390000002799 #33	ENSGT00950000183212.C	ENSGT00940000154716.f.a	ENSGT00940000154716.f.b	ENSGT00390000008281	ENSGT00940000159364.q.a.a	ENSGT00940000161521	ENSGT00940000160047	ENSGT00940000154197	ENSGT00390000008714.a
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00950000183112.b.b #21	ENSGT00950000186203	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000157203.f #35	ENSGT00390000002799 #33	ENSGT00950000183212.C	ENSGT00940000154716.f.a	ENSGT00940000154716.f.b	ENSGT00390000008281	ENSGT00940000159364.q.a.a	ENSGT00940000160047	ENSGT00940000154197	ENSGT00390000008714.a	ENSGT00550000075099.k
Medium ground finch	MODERN SPECIES	314	ENSGFOG00000008349	PRUNE1 (ENSGFOG00000007714)	CERS2 (ENSGFOG00000007678)	SETDB1 (ENSGFOG00000007653)	ARNT (ENSGFOG00000007566)	CTSK (ENSGFOG00000007554)	ENSGFOG00000007506	PRPF3 (ENSGFOG00000007494)	APH1A (ENSGFOG00000007489)	ANP32E (ENSGFOG00000007486)	PLEKHO1 (ENSGFOG00000007477)	VPS45 (ENSGFOG00000007475)	OTUD7B (ENSGFOG00000007466)	ENSGFOG00000007463	SV2A (ENSGFOG00000007454)	TXNIP (ENSGFOG00000007450) #22	RBM8A (ENSGFOG00000007446) #26	LIX1L (ENSGFOG00000007433) #25
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00950000183112.b.b #21	ENSGT00950000186203	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000157203.f #35	ENSGT00390000002799 #33	ENSGT00950000183212.C	ENSGT00940000154716.f.a	ENSGT00940000154716.f.b	ENSGT00390000008281	ENSGT00940000159364.q.a.a	ENSGT00940000154197	ENSGT00390000008714.a	ENSGT00390000009272.r	ENSGT00550000075099.k
Zebra finch	MODERN SPECIES	18	APH1A (ENSTGUG00000020297)	ANP32E (ENSTGUG00000004542)	PLEKHO1 (ENSTGUG00000019427)	VPS45 (ENSTGUG00000004493)	OTUD7B (ENSTGUG00000004479)	MTMR11 (ENSTGUG00000004470)	SF3B4 (ENSTGUG00000019975)	SV2A (ENSTGUG00000025334)	BOLA1 (ENSTGUG00000022266)	HJV (ENSTGUG00000013701) #21	ENSTGUG00000021938	ENSTGUG00000020632	RBM8A (ENSTGUG00000004447) #26	LIX1L (ENSTGUG00000004434) #25	PEX11B (ENSTGUG00000004433) #28	TXNIP (ENSTGUG00000019978) #22	RNF115 (ENSTGUG00000019792) #35	POLR3C (ENSTGUG00000016941) #33	ENSTGUG00000027190	NDUFS2 (ENSTGUG00000022898)	B4GALT3 (ENSTGUG00000023975)	ENSTGUG00000024371	USP21 (ENSTGUG00000016056)	UFC1 (ENSTGUG00000025494)	TOMM40L (ENSTGUG00000028764)	MPZ (ENSTGUG00000024229)	ENSTGUG00000021468	ENSTGUG00000029638	ENSTGUG00000023346	ENSTGUG00000029221	ENSTGUG00000023926
Common canary	MODERN SPECIES	81	CTSK (ENSSCAG00000011979)	ENSSCAG00000011971	PRPF3 (ENSSCAG00000011963)	ENSSCAG00000011951	ENSSCAG00000011949	APH1A (ENSSCAG00000011945)	CA14 (ENSSCAG00000011941)	ANP32E (ENSSCAG00000011934)	PLEKHO1 (ENSSCAG00000011918)	VPS45 (ENSSCAG00000011835)	OTUD7B (ENSSCAG00000011804)	ENSSCAG00000011796	SF3B4 (ENSSCAG00000011792)	ENSSCAG00000011787	HJV (ENSSCAG00000011784) #21	TXNIP (ENSSCAG00000011781) #22	SNX27 (ENSSCAG00000011769)	ENSSCAG00000011758	VANGL2 (ENSSCAG00000011752)	NCSTN (ENSSCAG00000011736)	COPA (ENSSCAG00000011178)	ENSSCAG00000011096	S100A11 (ENSSCAG00000011093)	ENSSCAG00000011090	ENSSCAG00000011087	ENSSCAG00000011081	ENSSCAG00000011080	ENSSCAG00000011073	ENSSCAG00000011072	ENSSCAG00000011067	ENSSCAG00000011063
Great tit	MODERN SPECIES	18	RPRD2 (ENSPMJG00000001737)	PRPF3 (ENSPMJG00000001723)	ENSPMJG00000001710	ENSPMJG00000001707	ENSPMJG00000001699	ANP32E (ENSPMJG00000001694)	PLEKHO1 (ENSPMJG00000001683)	VPS45 (ENSPMJG00000001675)	OTUD7B (ENSPMJG00000001674)	MTMR11 (ENSPMJG00000001664)	SF3B4 (ENSPMJG00000001660)	SV2A (ENSPMJG00000001656)	BOLA1 (ENSPMJG00000001655)	HJV (ENSPMJG00000001653) #21	ENSPMJG00000001651	TXNIP (ENSPMJG00000001647) #22	ENSPMJG00000001640	ANKRD34A (ENSPMJG00000001636) #24	RBM8A (ENSPMJG00000001631) #26	LIX1L (ENSPMJG00000001628) #25	PEX11B (ENSPMJG00000001624) #28	RNF115 (ENSPMJG00000001554) #35	POLR3C (ENSPMJG00000001543) #33	ENSPMJG00000001526	ENSPMJG00000001522	ENSPMJG00000001517	ENSPMJG00000001513	ENSPMJG00000001511	ENSPMJG00000001506	ENSPMJG00000001493	ENSPMJG00000001483
Neognathae_c	ANCESTRAL SPECIES	36	ENSGT00940000164936	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT01000000215168	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00950000186203	ENSGT00940000158522 #22	ENSGT01100000263845	ENSGT00390000012355.B.b #24	ENSGT00530000063712.a.a.h	ENSGT01050000244841.A.a.b #27	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT00390000013847 #32	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00530000063074.a #30	ENSGT00940000158341
Kakapo	MODERN SPECIES	60	ETV3 (ENSSHBG00005006200)	ETV3L (ENSSHBG00005006226)	ARHGEF11 (ENSSHBG00005006414)	ENSSHBG00005006579	ANP32E (ENSSHBG00005006621)	PLEKHO1 (ENSSHBG00005006648)	VPS45 (ENSSHBG00005006666)	ENSSHBG00005006733	OTUD7B (ENSSHBG00005006838)	SF3B4 (ENSSHBG00005006878)	SV2A (ENSSHBG00005006900)	BOLA1 (ENSSHBG00005006925)	ENSSHBG00005006946	HJV (ENSSHBG00005006970) #21	ENSSHBG00005006983	TXNIP (ENSSHBG00005007007) #22	ENSSHBG00005007023	ANKRD34A (ENSSHBG00005007039) #24	RBM8A (ENSSHBG00005007053) #26	LIX1L (ENSSHBG00005007076) #25	ARHGEF2 (ENSSHBG00005007107)
Golden eagle	MODERN SPECIES	25	ENSACCG00020002847	CA14 (ENSACCG00020002807)	APH1A (ENSACCG00020002773)	ENSACCG00020002755	ENSACCG00020002744	ANP32E (ENSACCG00020002729)	PLEKHO1 (ENSACCG00020002713)	VPS45 (ENSACCG00020002675)	OTUD7B (ENSACCG00020002629)	MTMR11 (ENSACCG00020002599)	SF3B4 (ENSACCG00020002561)	SV2A (ENSACCG00020002500)	BOLA1 (ENSACCG00020002457)	ENSACCG00020002439	HJV (ENSACCG00020002431) #21	TXNIP (ENSACCG00020002414) #22	ENSACCG00020002397	ANKRD34A (ENSACCG00020002378) #24	ENSACCG00020002351 #27	RBM8A (ENSACCG00020002326) #26	LIX1L (ENSACCG00020002309) #25	PEX11B (ENSACCG00020002287) #28	ENSACCG00020002265	ITGA10 (ENSACCG00020002214) #29	RNF115 (ENSACCG00020002154) #35	POLR3C (ENSACCG00020002120) #33	NUDT17 (ENSACCG00020002095) #32	PIAS3 (ENSACCG00020002050) #31	ANKRD35 (ENSACCG00020001982) #30	ARHGEF2 (ENSACCG00020001874)	ENSACCG00020001764
Galloanserae	ANCESTRAL SPECIES	49						ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000264033	ENSGT00390000012355.B.b #24	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00940000164422	ENSGT00940000158423 #29	ENSGT00940000157203 #35	ENSGT00390000002799 #33	ENSGT01030000234539.a.a.b.a.a #31
Anatidae	ANCESTRAL SPECIES	158														ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22
Pink-footed goose	MODERN SPECIES	569															HJV (ENSABRG00000017481) #21	TXNIP (ENSABRG00000017486) #22
Duck	MODERN SPECIES	3492														ENSAPLG00000003193	HJV (ENSAPLG00000029170) #21	TXNIP (ENSAPLG00000005479) #22
Phasianidae	ANCESTRAL SPECIES	30	ENSGT00940000165149	ENSGT00940000158230	ENSGT00390000006100	ENSGT00940000155620	ENSGT00390000008765	ENSGT00390000007227.a	ENSGT00730000111346	ENSGT00950000183076.a.b.b.a.b	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT01100000264033	ENSGT00390000012355.B.b #24	ENSGT00730000111185 #26	ENSGT00390000005869.a #25	ENSGT00390000014273.b #28	ENSGT00390000002799 #33	ENSGT01030000234539.a.a.b.a.a #31	ENSGT00940000159463	ENSGT00950000182844.b.b.a	ENSGT00940000161384	ENSGT00940000157343	ENSGT00940000167106.a	ENSGT00940000153558.a	ENSGT00940000157619	ENSGT00940000159724
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000158522 #22
Turkey	MODERN SPECIES	404																ENSMGAG00000021145 #22
Japanese quail	MODERN SPECIES	17	F11R (ENSCJPG00005013969)	USF1 (ENSCJPG00005013970)	ENSCJPG00005013971	NECTIN4 (ENSCJPG00005013972)	ENSCJPG00005013975	ENSCJPG00005013976	RNF115 (ENSCJPG00005013977) #35	ENSCJPG00005013978	OTUD7B (ENSCJPG00005013980)	MTMR11 (ENSCJPG00005013981)	SF3B4 (ENSCJPG00005013982)	SV2A (ENSCJPG00005013983)	BOLA1 (ENSCJPG00005013984)	ENSCJPG00005013985	HJV (ENSCJPG00005013986) #21	TXNIP (ENSCJPG00005013987) #22	MEF2D (ENSCJPG00005013988)	ENSCJPG00005013990	HAPLN2 (ENSCJPG00005013991)	BCAN (ENSCJPG00005013992)	ENSCJPG00005013993	ENSCJPG00005013994	CRABP2 (ENSCJPG00005013995)	ENSCJPG00005013996	ISG20L2 (ENSCJPG00005013997)	METTL25B (ENSCJPG00005013998)	MRPL24 (ENSCJPG00005013999)	HDGF (ENSCJPG00005014000)	PRCC (ENSCJPG00005014001)	SH2D2A (ENSCJPG00005014002)	ENSCJPG00005014003
Anura	ANCESTRAL SPECIES	193			ENSGT01010000223749	ENSGT01100000263494.a.b.a.c.b.a.b	ENSGT01100000263574.c.b	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00950000183112.b.b #21	ENSGT00940000158522 #22	ENSGT00940000165856	ENSGT01100000264033	ENSGT00390000012355.B.b #24
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	4	COPA (ENSLLEG00000029501)	NCSTN (ENSLLEG00000028552)	ENSLLEG00000028457	VANGL2 (ENSLLEG00000028424)	ENSLLEG00000028410	ENSLLEG00000028330	ENSLLEG00000028202	ENSLLEG00000028140	SV2A (ENSLLEG00000028028)	BOLA1 (ENSLLEG00000027989)	ENSLLEG00000027955	ENSLLEG00000027922	ENSLLEG00000027914	ENSLLEG00000027887	HJV (ENSLLEG00000027874) #21	ENSLLEG00000027776 #22	ENSLLEG00000027740	RPRD2 (ENSLLEG00000027656)	ENSLLEG00000027186	ENSLLEG00000026800	ENSLLEG00000026575	ENSLLEG00000026538	ENSLLEG00000026493	ADAMTSL4 (ENSLLEG00000026357)	ENSA (ENSLLEG00000026308)	ENSLLEG00000026281	ENSLLEG00000026268	ENSLLEG00000026243	ENSLLEG00000026228	ENSLLEG00000026212	ENSLLEG00000026186
Leishan spiny toad	MODERN SPECIES	6	HSPA9 (ENSLLEG00000014611)	ENSLLEG00000017437	ENSLLEG00000017523	ENSLLEG00000017679	ENSLLEG00000018996	ENSLLEG00000019014	ENSLLEG00000019066	ENSLLEG00000019160	MAG (ENSLLEG00000019238)	ENSLLEG00000019702	P4HA2 (ENSLLEG00000020017)	ENSLLEG00000020560	ENSLLEG00000020601	ENSLLEG00000020621	ENSLLEG00000020748	ENSLLEG00000022181 #22	ENSLLEG00000022249	ENSLLEG00000022425	NEUROG1 (ENSLLEG00000022523)	MACROH2A1 (ENSLLEG00000022585)	ENSLLEG00000022777	ENSLLEG00000022797	PITX1 (ENSLLEG00000022830)	ENSLLEG00000022902	TXNDC15 (ENSLLEG00000022974)	C5orf24 (ENSLLEG00000023126)	ENSLLEG00000023183	DDX46 (ENSLLEG00000023221)	CAMLG (ENSLLEG00000023589)	ENSLLEG00000023641	SEC24A (ENSLLEG00000023670)
Frog	MODERN SPECIES	8	ENSXETG00000036274	ENSXETG00000040366	ENSXETG00000041196	ENSXETG00000035210	anp32e (ENSXETG00000015745)	ENSXETG00000034971	plekho1 (ENSXETG00000015750)	vps45 (ENSXETG00000015753)	otud7b (ENSXETG00000015765)	mtmr11 (ENSXETG00000011034)	sf3b4 (ENSXETG00000011038)	sv2a (ENSXETG00000032522)	bola1 (ENSXETG00000033155)	nr2f5 (ENSXETG00000011046)	hjv (ENSXETG00000040701) #21	txnip (ENSXETG00000011050) #22	polr3gl (ENSXETG00000011053)	ankrd34a (ENSXETG00000011054) #24	ENSXETG00000041795	ENSXETG00000036611	ENSXETG00000047155	ENSXETG00000045399	ENSXETG00000036193	ENSXETG00000035193	ENSXETG00000043317	ENSXETG00000042982	ENSXETG00000028037	mrps21 (ENSXETG00000028038)	prpf3 (ENSXETG00000018654)	ENSXETG00000047709	rprd2 (ENSXETG00000018652)