Euteleostomi	ANCESTRAL SPECIES	194					ENSGT00440000039287	ENSGT00390000006809	ENSGT00940000164500	ENSGT00940000159808	ENSGT00390000006337	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b #24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213
Sarcopterygii	ANCESTRAL SPECIES	367														ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b #24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a
Tetrapoda	ANCESTRAL SPECIES	59	ENSGT00390000006337	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a
Amniota	ANCESTRAL SPECIES	23	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00950000183102.B
Mammalia	ANCESTRAL SPECIES	61	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01000000216439	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00950000183102.B	ENSGT00940000159258
Theria	ANCESTRAL SPECIES	31	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25
Eutheria	ANCESTRAL SPECIES	34	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Euarchontoglires_A	ANCESTRAL SPECIES	24	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000162150 #15	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Glires	ANCESTRAL SPECIES	25	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000162150 #15	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Muroidea	ANCESTRAL SPECIES	32	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Northern American deer mouse	MODERN SPECIES	14	Plekhj1 (ENSPEMG00000022829) #7	Dot1l (ENSPEMG00000023341) #8	Ap3d1 (ENSPEMG00000010230) #9	Izumo4 (ENSPEMG00000022820) #10	Mob3a (ENSPEMG00000013596) #11	Mknk2 (ENSPEMG00000023115) #12	Btbd2 (ENSPEMG00000022495) #13	Csnk1g2 (ENSPEMG00000022269) #14	Scamp4 (ENSPEMG00000018690) #15	ENSPEMG00000012417 #16	Abhd17a (ENSPEMG00000022512) #17	ENSPEMG00000022678 #18	ENSPEMG00000021711 #19	Atp8b3 (ENSPEMG00000022146) #20	ENSPEMG00000031308 #21	Tcf3 (ENSPEMG00000021449) #22	ENSPEMG00000028742 #23	Mbd3 (ENSPEMG00000021768) #24	ENSPEMG00000029465 #25	Plk5 (ENSPEMG00000022788) #26	Adamtsl5 (ENSPEMG00000023093) #27	ENSPEMG00000022173 #28	Pcsk4 (ENSPEMG00000022618) #29	2310011J03Rik (ENSPEMG00000026611) #30	Apc2 (ENSPEMG00000028979) #31	ENSPEMG00000021829 #32	Dazap1 (ENSPEMG00000022548) #33	Gamt (ENSPEMG00000021744) #34	Ndufs7 (ENSPEMG00000022966) #35	Pwwp3a (ENSPEMG00000023645) #36	Efna2 (ENSPEMG00000023699) #37
Prairie vole	MODERN SPECIES	349	Plekhj1 (ENSMOCG00000021610) #7	Dot1l (ENSMOCG00000019264) #8	Ap3d1 (ENSMOCG00000001862) #9	Izumo4 (ENSMOCG00000019193) #10	Mob3a (ENSMOCG00000013082) #11	Mknk2 (ENSMOCG00000012080) #12	Btbd2 (ENSMOCG00000000475) #13	Csnk1g2 (ENSMOCG00000012005) #14	Scamp4 (ENSMOCG00000010362) #15	ENSMOCG00000017384 #16	Abhd17a (ENSMOCG00000017992) #17	Klf16 (ENSMOCG00000018828) #18	Rexo1 (ENSMOCG00000022026) #19	Atp8b3 (ENSMOCG00000005048) #20	Onecut3 (ENSMOCG00000007601) ##21	Tcf3 (ENSMOCG00000014260) #22	Uqcr11 (ENSMOCG00000021141) #23	Mbd3 (ENSMOCG00000021527) #24	Mex3d (ENSMOCG00000010308) #25	Plk5 (ENSMOCG00000012878) #26	Adamtsl5 (ENSMOCG00000017103) #27	ENSMOCG00000019981 #28	Pcsk4 (ENSMOCG00000006638) #29	2310011J03Rik (ENSMOCG00000001752) #30	Apc2 (ENSMOCG00000018457) #31	Rps15 (ENSMOCG00000019754) #32	Dazap1 (ENSMOCG00000016931) #33	Gamt (ENSMOCG00000009137) #34	Ndufs7 (ENSMOCG00000020025) #35	Pwwp3a (ENSMOCG00000016458) #36	Efna2 (ENSMOCG00000018128) #37
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Chinese hamster chok1gshd	MODERN SPECIES	2	Plekhj1 (ENSCGRG00001024439) #7	Dot1l (ENSCGRG00001023955) #8	Ap3d1 (ENSCGRG00001021701) #9	Izumo4 (ENSCGRG00001016288) #10	Mob3a (ENSCGRG00001013206) #11	Mknk2 (ENSCGRG00001006935) #12	Btbd2 (ENSCGRG00001020887) #13	Csnk1g2 (ENSCGRG00001023282) #14	Scamp4 (ENSCGRG00001019580) #15	ENSCGRG00001009781 #16	Abhd17a (ENSCGRG00001015688) #17	Klf16 (ENSCGRG00001014949) #18	Rexo1 (ENSCGRG00001020072) #19	Atp8b3 (ENSCGRG00001016607) #20	Onecut3 (ENSCGRG00001015182) ##21	Tcf3 (ENSCGRG00001007778) #22	Uqcr11 (ENSCGRG00001000921) #23	Mbd3 (ENSCGRG00001024592) #24	Mex3d (ENSCGRG00001023775) #25	Plk5 (ENSCGRG00001006053) #26	Adamtsl5 (ENSCGRG00001002103) #27	ENSCGRG00001013695 #28	Pcsk4 (ENSCGRG00001009900) #29	2310011J03Rik (ENSCGRG00001006969) #30	Apc2 (ENSCGRG00001006203) #31	ENSCGRG00001000902 #32	Gamt (ENSCGRG00001024338) #34	Ndufs7 (ENSCGRG00001016749) #35	Pwwp3a (ENSCGRG00001015037) #36	Efna2 (ENSCGRG00001006684) #37	Fam174c (ENSCGRG00001002716)
Golden Hamster	MODERN SPECIES	764	ENSMAUG00000016155 #7	Dot1l (ENSMAUG00000020881) #8	Ap3d1 (ENSMAUG00000013821) #9	Izumo4 (ENSMAUG00000003317) #10	Mob3a (ENSMAUG00000020852) #11	Mknk2 (ENSMAUG00000010327) #12	Btbd2 (ENSMAUG00000016518) #13	Csnk1g2 (ENSMAUG00000008196) #14	Scamp4 (ENSMAUG00000010303) #15	ENSMAUG00000003412 #16	Abhd17a (ENSMAUG00000018289) #17	Klf16 (ENSMAUG00000013135) #18	Rexo1 (ENSMAUG00000007218) #19	Atp8b3 (ENSMAUG00000007365) #20	Onecut3 (ENSMAUG00000020813) ##21	Tcf3 (ENSMAUG00000016223) #22	Uqcr11 (ENSMAUG00000015805) #23	Mbd3 (ENSMAUG00000020118) #24	Mex3d (ENSMAUG00000014977) #25	Plk5 (ENSMAUG00000008809) #26	Adamtsl5 (ENSMAUG00000005571) #27	ENSMAUG00000011771 #28	Pcsk4 (ENSMAUG00000020195) #29	2310011J03Rik (ENSMAUG00000016300) #30	Apc2 (ENSMAUG00000021769) #31	Rps15 (ENSMAUG00000004679) #32	Dazap1 (ENSMAUG00000012188) #33	Gamt (ENSMAUG00000002429) #34	Ndufs7 (ENSMAUG00000021038) #35	Pwwp3a (ENSMAUG00000015348) #36	Efna2 (ENSMAUG00000022232) #37
Murinae	ANCESTRAL SPECIES	25	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Mus	ANCESTRAL SPECIES	15	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590.n #19	ENSGT00940000158590.m #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590.n #19	ENSGT00940000158590.m #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590.m #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Mouse	MODERN SPECIES	1	Dot1l (ENSMUSG00000061589) #8	Ap3d1 (ENSMUSG00000020198) #9	Izumo4 (ENSMUSG00000055862) #10	Mob3a (ENSMUSG00000003348) #11	Mknk2 (ENSMUSG00000020190) #12	Btbd2 (ENSMUSG00000003344) #13	Csnk1g2 (ENSMUSG00000003345) #14	Gm49322 (ENSMUSG00000035370) #16	Adat3 (ENSMUSG00000113640) #16	Scamp4 (ENSMUSG00000113949) #15	Abhd17a (ENSMUSG00000003346) #17	Klf16 (ENSMUSG00000035397) #18	Rexo1 (ENSMUSG00000047417) #19	Atp8b3 (ENSMUSG00000003341) #20	Onecut3 (ENSMUSG00000045518) ##21	Tcf3 (ENSMUSG00000020167) #22	Uqcr11 (ENSMUSG00000020163) #23	Mbd3 (ENSMUSG00000035478) #24	Mex3d (ENSMUSG00000048696) #25	Plk5 (ENSMUSG00000035486) #26	Adamtsl5 (ENSMUSG00000043822) #27	Reep6 (ENSMUSG00000035504)	Pcsk4 (ENSMUSG00000020131) #29	2310011J03Rik (ENSMUSG00000020133) #30	Apc2 (ENSMUSG00000020135) #31	Rps15 (ENSMUSG00000063457) #32	Dazap1 (ENSMUSG00000069565) #33	Gamt (ENSMUSG00000020150) #34	Ndufs7 (ENSMUSG00000020153) #35	Pwwp3a (ENSMUSG00000020156) #36	Efna2 (ENSMUSG00000003070) #37
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590.m #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.cc #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Steppe mouse	MODERN SPECIES	2340																Tcf3 (ENSMSIG00000007567) #22	Uqcr11 (ENSMSIG00000007525) #23	Mbd3 (ENSMSIG00000007464) #24	ENSMSIG00000007457 #25	Plk5 (ENSMSIG00000007311) #26	Adamtsl5 (ENSMSIG00000007286) #27	Reep6 (ENSMSIG00000007219)	Pcsk4 (ENSMSIG00000007185) #29	2310011J03Rik (ENSMSIG00000007172) #30	Apc2 (ENSMSIG00000007080) #31	ENSMSIG00000007049 #32	Dazap1 (ENSMSIG00000007017) #33	Gamt (ENSMSIG00000006976) #34	Ndufs7 (ENSMSIG00000006928) #35	Pwwp3a (ENSMSIG00000006900) #36	Efna2 (ENSMSIG00000006880) #37
spretus	MODERN SPECIES	1	Dot1l (MGP_SPRETEiJ_G0016418) #8	Ap3d1 (MGP_SPRETEiJ_G0016417) #9	Izumo4 (MGP_SPRETEiJ_G0016416) #10	Mob3a (MGP_SPRETEiJ_G0016415) #11	Mknk2 (MGP_SPRETEiJ_G0016414) #12	Btbd2 (MGP_SPRETEiJ_G0016413) #13	Csnk1g2 (MGP_SPRETEiJ_G0016412) #14	Scamp4 (MGP_SPRETEiJ_G0016411) #15	MGP_SPRETEiJ_G0016410 #16	Abhd17a (MGP_SPRETEiJ_G0016409) #17	Klf16 (MGP_SPRETEiJ_G0016408) #18	MGP_SPRETEiJ_G0016407 #19	Rexo1 (MGP_SPRETEiJ_G0016406) #19	Atp8b3 (MGP_SPRETEiJ_G0016405) #20	Onecut3 (MGP_SPRETEiJ_G0016404) ##21	Tcf3 (MGP_SPRETEiJ_G0016403) #22	Uqcr11 (MGP_SPRETEiJ_G0016402) #23	Mbd3 (MGP_SPRETEiJ_G0016401) #24	Mex3d (MGP_SPRETEiJ_G0016400) #25	Plk5 (MGP_SPRETEiJ_G0016399) #26	Adamtsl5 (MGP_SPRETEiJ_G0016398) #27	MGP_SPRETEiJ_G0016397 #28	Pcsk4 (MGP_SPRETEiJ_G0016396) #29	2310011J03Rik (MGP_SPRETEiJ_G0016395) #30	Apc2 (MGP_SPRETEiJ_G0016394) #31	Rps15 (MGP_SPRETEiJ_G0016393) #32	Dazap1 (MGP_SPRETEiJ_G0016392) #33	Gamt (MGP_SPRETEiJ_G0016391) #34	Ndufs7 (MGP_SPRETEiJ_G0016390) #35	Pwwp3a (MGP_SPRETEiJ_G0016389) #36	Efna2 (MGP_SPRETEiJ_G0016388) #37
Ryukyu mouse	MODERN SPECIES	1	Dot1l (MGP_CAROLIEiJ_G0015600) #8	Ap3d1 (MGP_CAROLIEiJ_G0015599) #9	Izumo4 (MGP_CAROLIEiJ_G0015598) #10	Mob3a (MGP_CAROLIEiJ_G0015597) #11	Mknk2 (MGP_CAROLIEiJ_G0015596) #12	Btbd2 (MGP_CAROLIEiJ_G0015595) #13	Csnk1g2 (MGP_CAROLIEiJ_G0015594) #14	Scamp4 (MGP_CAROLIEiJ_G0015593) #15	MGP_CAROLIEiJ_G0015592 #16	Abhd17a (MGP_CAROLIEiJ_G0015591) #17	Klf16 (MGP_CAROLIEiJ_G0015590) #18	MGP_CAROLIEiJ_G0015589 #19	Rexo1 (MGP_CAROLIEiJ_G0015588) #19	Atp8b3 (MGP_CAROLIEiJ_G0015587) #20	Onecut3 (MGP_CAROLIEiJ_G0015586) ##21	Tcf3 (MGP_CAROLIEiJ_G0015585) #22	Uqcr11 (MGP_CAROLIEiJ_G0015584) #23	Mbd3 (MGP_CAROLIEiJ_G0015583) #24	Mex3d (MGP_CAROLIEiJ_G0015582) #25	Plk5 (MGP_CAROLIEiJ_G0015581) #26	Adamtsl5 (MGP_CAROLIEiJ_G0015580) #27	MGP_CAROLIEiJ_G0015579 #28	Pcsk4 (MGP_CAROLIEiJ_G0015578) #29	2310011J03Rik (MGP_CAROLIEiJ_G0015577) #30	Apc2 (MGP_CAROLIEiJ_G0015576) #31	Rps15 (MGP_CAROLIEiJ_G0015575) #32	Dazap1 (MGP_CAROLIEiJ_G0015574) #33	Gamt (MGP_CAROLIEiJ_G0015573) #34	Ndufs7 (MGP_CAROLIEiJ_G0015572) #35	Pwwp3a (MGP_CAROLIEiJ_G0015571) #36	Efna2 (MGP_CAROLIEiJ_G0015570) #37
Shrew mouse	MODERN SPECIES	22	Dot1l (MGP_PahariEiJ_G0031013) #8	Ap3d1 (MGP_PahariEiJ_G0031012) #9	Izumo4 (MGP_PahariEiJ_G0031011) #10	Mob3a (MGP_PahariEiJ_G0031010) #11	Mknk2 (MGP_PahariEiJ_G0031009) #12	Btbd2 (MGP_PahariEiJ_G0031008) #13	Csnk1g2 (MGP_PahariEiJ_G0031007) #14	Scamp4 (MGP_PahariEiJ_G0031006) #15	MGP_PahariEiJ_G0031005 #16	Abhd17a (MGP_PahariEiJ_G0031004) #17	Klf16 (MGP_PahariEiJ_G0031003) #18	MGP_PahariEiJ_G0031002 #19	Rexo1 (MGP_PahariEiJ_G0031001) #19	Atp8b3 (MGP_PahariEiJ_G0031000) #20	Onecut3 (MGP_PahariEiJ_G0030999) ##21	Tcf3 (MGP_PahariEiJ_G0030998) #22	Uqcr11 (MGP_PahariEiJ_G0030997) #23	Mbd3 (MGP_PahariEiJ_G0030996) #24	MGP_PahariEiJ_G0030995 #25	Plk5 (MGP_PahariEiJ_G0030994) #26	Adamtsl5 (MGP_PahariEiJ_G0030993) #27	MGP_PahariEiJ_G0030992 #28	MGP_PahariEiJ_G0030991 #29	2310011J03Rik (MGP_PahariEiJ_G0030990) #30	Apc2 (MGP_PahariEiJ_G0030989) #31	Rps15 (MGP_PahariEiJ_G0030988) #32	Dazap1 (MGP_PahariEiJ_G0030987) #33	Gamt (MGP_PahariEiJ_G0030986) #34	Ndufs7 (MGP_PahariEiJ_G0030985) #35	Pwwp3a (MGP_PahariEiJ_G0030984) #36	Efna2 (MGP_PahariEiJ_G0030983) #37
Rat	MODERN SPECIES	17	Sf3a2 (ENSRNOG00000019349)	Dot1l (ENSRNOG00000032546) #8	Ap3d1 (ENSRNOG00000018977) #9	Izumo4 (ENSRNOG00000031950) #10	Mob3a (ENSRNOG00000018971) #11	Mknk2 (ENSRNOG00000029028) #12	Btbd2 (ENSRNOG00000018788) #13	Csnk1g2 (ENSRNOG00000018529) #14	Adat3 (ENSRNOG00000063591) #16	Scamp4 (ENSRNOG00000018271) #15	Abhd17a (ENSRNOG00000018212) #17	Klf16 (ENSRNOG00000033694) #18	Rexo1 (ENSRNOG00000017916) #19	Atp8b3 (ENSRNOG00000024975) #20	Onecut3 (ENSRNOG00000068848) ##21	Tcf3 (ENSRNOG00000051499) #22	Mbd3 (ENSRNOG00000028956) #24	Mex3d (ENSRNOG00000030830) #25	Plk5 (ENSRNOG00000034102) #26	Adamtsl5 (ENSRNOG00000033787) #27	Reep6 (ENSRNOG00000033262) #28	Pcsk4 (ENSRNOG00000016405) #29	Apc2 (ENSRNOG00000033791) #31	Rps15 (ENSRNOG00000024603) #32	Cirbp (ENSRNOG00000031387) #33	Gamt (ENSRNOG00000024577) #34	Ndufs7 (ENSRNOG00000024568) #35	Pwwp3a (ENSRNOG00000024549) #36	Efna2 (ENSRNOG00000016203) #37	Midn (ENSRNOG00000015434)	Atp5f1d (ENSRNOG00000014625)
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Plekhj1 (ENSNGAG00000021814) #7	Dot1l (ENSNGAG00000022514) #8	Ap3d1 (ENSNGAG00000022567) #9	Izumo4 (ENSNGAG00000023033) #10	Mob3a (ENSNGAG00000003413) #11	Mknk2 (ENSNGAG00000007032) #12	Btbd2 (ENSNGAG00000009736) #13	Csnk1g2 (ENSNGAG00000014089) #14	Scamp4 (ENSNGAG00000023044) #15	ENSNGAG00000022254 #16	Abhd17a (ENSNGAG00000022493) #17	Klf16 (ENSNGAG00000022068) #18	Rexo1 (ENSNGAG00000022034) #19	Atp8b3 (ENSNGAG00000021845) #20	Onecut3 (ENSNGAG00000022721) ##21	Tcf3 (ENSNGAG00000008392) #22	Uqcr11 (ENSNGAG00000023282) #23	Mbd3 (ENSNGAG00000022652) #24	Mex3d (ENSNGAG00000021771) #25	Plk5 (ENSNGAG00000022869) #26	Adamtsl5 (ENSNGAG00000022185) #27	ENSNGAG00000023057 #28	Pcsk4 (ENSNGAG00000004063) #29	2310011J03Rik (ENSNGAG00000023280) #30	Apc2 (ENSNGAG00000005168) #31	Rps15 (ENSNGAG00000023415) #32	Dazap1 (ENSNGAG00000003560) #33	Gamt (ENSNGAG00000023290) #34	Ndufs7 (ENSNGAG00000001514) #35	Pwwp3a (ENSNGAG00000022211) #36	Efna2 (ENSNGAG00000023274) #37
Lesser Egyptian jerboa	MODERN SPECIES	55	Amh (ENSJJAG00000022991)	Sf3a2 (ENSJJAG00000010635)	Plekhj1 (ENSJJAG00000024092) #7	Dot1l (ENSJJAG00000023313) #8	Ap3d1 (ENSJJAG00000005990) #9	Izumo4 (ENSJJAG00000001324) #10	Mob3a (ENSJJAG00000014754) #11	Mknk2 (ENSJJAG00000016386) #12	ENSJJAG00000015554 #13	Csnk1g2 (ENSJJAG00000012257) #14	Scamp4 (ENSJJAG00000024085) #15	Abhd17a (ENSJJAG00000021626) #17	Klf16 (ENSJJAG00000013835) #18	Rexo1 (ENSJJAG00000023213) #19	Atp8b3 (ENSJJAG00000016029) #20	Tcf3 (ENSJJAG00000024381) #22	Uqcr11 (ENSJJAG00000005524) #23	Mbd3 (ENSJJAG00000013343) #24	Mex3d (ENSJJAG00000024350) #25	Adamtsl5 (ENSJJAG00000017720) #27	ENSJJAG00000001649 #28	Pcsk4 (ENSJJAG00000024344) #29	2310011J03Rik (ENSJJAG00000019517) #30	Apc2 (ENSJJAG00000011530) #31	Rps15 (ENSJJAG00000010009) #32	Dazap1 (ENSJJAG00000000715) #33	Gamt (ENSJJAG00000020674) #34	Ndufs7 (ENSJJAG00000021001) #35	Pwwp3a (ENSJJAG00000015661) #36	Efna2 (ENSJJAG00000011477) #37	ENSJJAG00000021928
Kangaroo rat	MODERN SPECIES	383	Amh (ENSDORG00000014447)	Sf3a2 (ENSDORG00000014445)	Plekhj1 (ENSDORG00000024741) #7	Dot1l (ENSDORG00000014438) #8	Ap3d1 (ENSDORG00000009038) #9	Izumo4 (ENSDORG00000009034) #10	Mknk2 (ENSDORG00000011101) #12	Btbd2 (ENSDORG00000012931) #13	Csnk1g2 (ENSDORG00000012930) #14	ENSDORG00000028187 #16	Scamp4 (ENSDORG00000023142) #15	Abhd17a (ENSDORG00000016211) #17	ENSDORG00000026084 #18	Rexo1 (ENSDORG00000013381) #19	Atp8b3 (ENSDORG00000013377) #20	Tcf3 (ENSDORG00000004745) #22	Uqcr11 (ENSDORG00000004744) #23	Mbd3 (ENSDORG00000004743) #24	Plk5 (ENSDORG00000029254) #26	Adamtsl5 (ENSDORG00000016445) #27	ENSDORG00000027460 #29	2310011J03Rik (ENSDORG00000026640) #30	Apc2 (ENSDORG00000029142) #31	ENSDORG00000029404 #32	Dazap1 (ENSDORG00000010038) #33	Gamt (ENSDORG00000010036) #34	Ndufs7 (ENSDORG00000030112) #35	Pwwp3a (ENSDORG00000010033) #36	Efna2 (ENSDORG00000006110) #37	Fam174c (ENSDORG00000029721)	Cirbp (ENSDORG00000023540)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Marmotini	ANCESTRAL SPECIES	24	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a.e #36	ENSGT00940000160040.B #37
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a.e #36	ENSGT00940000160040.B #37
Squirrel	MODERN SPECIES	188	SF3A2 (ENSSTOG00000007495)	PLEKHJ1 (ENSSTOG00000026258) #7	DOT1L (ENSSTOG00000011582) #8	AP3D1 (ENSSTOG00000014617) #9	IZUMO4 (ENSSTOG00000027805) #10	MOB3A (ENSSTOG00000024368) #11	MKNK2 (ENSSTOG00000012438) #12	BTBD2 (ENSSTOG00000024537) #13	CSNK1G2 (ENSSTOG00000022495) #14	SCAMP4 (ENSSTOG00000028842) #15	ABHD17A (ENSSTOG00000004712) #17	ENSSTOG00000033169 #18	REXO1 (ENSSTOG00000003257) #19	ATP8B3 (ENSSTOG00000021249) #20	ONECUT3 (ENSSTOG00000027380) ##21	TCF3 (ENSSTOG00000010293) #22	UQCR11 (ENSSTOG00000021241) #23	MBD3 (ENSSTOG00000015870) #24	MEX3D (ENSSTOG00000025299) #25	ENSSTOG00000028771 #26	ADAMTSL5 (ENSSTOG00000009230) #27	REEP6 (ENSSTOG00000033173) #28	PCSK4 (ENSSTOG00000021951) #29	ENSSTOG00000027373 #30	APC2 (ENSSTOG00000024833) #31	RPS15 (ENSSTOG00000006423) #32	DAZAP1 (ENSSTOG00000006401) #33	GAMT (ENSSTOG00000022698) #34	NDUFS7 (ENSSTOG00000020105) #35	PWWP3A (ENSSTOG00000000148) #36	EFNA2 (ENSSTOG00000026755) #37
Arctic ground squirrel	MODERN SPECIES	603																TCF3 (ENSUPAG00010013147) #22	UQCR11 (ENSUPAG00010013177) #23	MBD3 (ENSUPAG00010013180) #24	MEX3D (ENSUPAG00010013193) #25	ENSUPAG00010013203 #26	ADAMTSL5 (ENSUPAG00010013226) #27	PCSK4 (ENSUPAG00010013254) #29	REEP6 (ENSUPAG00010013266) #28	C19orf25 (ENSUPAG00010013296) #30	APC2 (ENSUPAG00010013306) #31	RPS15 (ENSUPAG00010013359) #32	DAZAP1 (ENSUPAG00010013372) #33	NDUFS7 (ENSUPAG00010013413) #35	GAMT (ENSUPAG00010013430) #34	PWWP3A (ENSUPAG00010013442) #36	EFNA2 (ENSUPAG00010013457) #37
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005020712 #9	AP3D1 (ENSSVLG00005020646) #9	IZUMO4 (ENSSVLG00005020559) #10	MOB3A (ENSSVLG00005020512) #11	MKNK2 (ENSSVLG00005020381) #12	BTBD2 (ENSSVLG00005020278) #13	CSNK1G2 (ENSSVLG00005020222) #14	SCAMP4 (ENSSVLG00005020123) #15	ABHD17A (ENSSVLG00005020039) #17	KLF16 (ENSSVLG00005019996) #18	ENSSVLG00005019938	ENSSVLG00005019814 #19	ENSSVLG00005019753 #20	ENSSVLG00005019621 #20	ONECUT3 (ENSSVLG00005019576) ##21	TCF3 (ENSSVLG00005019501) #22	UQCR11 (ENSSVLG00005019254) #23	MBD3 (ENSSVLG00005019133) #24	MEX3D (ENSSVLG00005019086) #25	PLK5 (ENSSVLG00005018817) #26	ADAMTSL5 (ENSSVLG00005018762) #27	REEP6 (ENSSVLG00005018721) #28	PCSK4 (ENSSVLG00005018300) #29	C19orf25 (ENSSVLG00005018258) #30	APC2 (ENSSVLG00005017604) #31	RPS15 (ENSSVLG00005017411) #32	DAZAP1 (ENSSVLG00005017301) #33	GAMT (ENSSVLG00005017199) #34	NDUFS7 (ENSSVLG00005016984) #35	ENSSVLG00005016943 #36	EFNA2 (ENSSVLG00005016887) #37
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Naked mole-rat female	MODERN SPECIES	21	DOT1L (ENSHGLG00000013977) #8	AP3D1 (ENSHGLG00000018179) #9	IZUMO4 (ENSHGLG00000045153) #10	MOB3A (ENSHGLG00000033345) #11	ENSHGLG00000040780	MKNK2 (ENSHGLG00000045644) #12	BTBD2 (ENSHGLG00000013706) #13	ENSHGLG00000040593	CSNK1G2 (ENSHGLG00000013947) #14	SCAMP4 (ENSHGLG00000017794) #15	ABHD17A (ENSHGLG00000047885) #17	KLF16 (ENSHGLG00000032359) #18	REXO1 (ENSHGLG00000009363) #19	ATP8B3 (ENSHGLG00000012356) #20	ONECUT3 (ENSHGLG00000006096) ##21	TCF3 (ENSHGLG00000006992) #22	UQCR11 (ENSHGLG00000042586) #23	MBD3 (ENSHGLG00000018023) #24	MEX3D (ENSHGLG00000043689) #25	ENSHGLG00000032262	ENSHGLG00000015198 #26	ADAMTSL5 (ENSHGLG00000005884) #27	REEP6 (ENSHGLG00000008175) #28	PCSK4 (ENSHGLG00000047722) #29	C19orf25 (ENSHGLG00000010653) #30	APC2 (ENSHGLG00000018187) #31	RPS15 (ENSHGLG00000046613) #32	DAZAP1 (ENSHGLG00000017518) #33	GAMT (ENSHGLG00000017891) #34	NDUFS7 (ENSHGLG00000035555) #35	PWWP3A (ENSHGLG00000007232) #36
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.ec #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.ec #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Long-tailed chinchilla	MODERN SPECIES	202	SF3A2 (ENSCLAG00000008987)	PLEKHJ1 (ENSCLAG00000009663) #7	DOT1L (ENSCLAG00000014227) #8	AP3D1 (ENSCLAG00000011465) #9	IZUMO4 (ENSCLAG00000014821) #10	MOB3A (ENSCLAG00000014306) #11	MKNK2 (ENSCLAG00000011365) #12	BTBD2 (ENSCLAG00000011757) #13	CSNK1G2 (ENSCLAG00000013855) #14	SCAMP4 (ENSCLAG00000006742) #15	ABHD17A (ENSCLAG00000007148) #17	ENSCLAG00000007739 #18	REXO1 (ENSCLAG00000013515) #19	ATP8B3 (ENSCLAG00000010582) #20	MBD3 (ENSCLAG00000008294) #24	TCF3 (ENSCLAG00000012013) #22	UQCR11 (ENSCLAG00000015392) #23	ENSCLAG00000017344 #26	PCSK4 (ENSCLAG00000008632) #29	C19orf25 (ENSCLAG00000007022) #30	APC2 (ENSCLAG00000009831) #31	ENSCLAG00000007248 #32	DAZAP1 (ENSCLAG00000009221) #33	GAMT (ENSCLAG00000007529) #34	NDUFS7 (ENSCLAG00000006766) #35	PWWP3A (ENSCLAG00000007894) #36	EFNA2 (ENSCLAG00000010919) #37	FAM174C (ENSCLAG00000015738)	CIRBP (ENSCLAG00000016087)	ENSCLAG00000006930	ATP5F1D (ENSCLAG00000008150)
Degu	MODERN SPECIES	91	ENSODEG00000020086	AP3D1 (ENSODEG00000013899) #9	IZUMO4 (ENSODEG00000013972) #10	MOB3A (ENSODEG00000013513) #11	MKNK2 (ENSODEG00000013380) #12	BTBD2 (ENSODEG00000012981) #13	CSNK1G2 (ENSODEG00000012762) #14	SCAMP4 (ENSODEG00000015959) #15	ADAT3 (ENSODEG00000013157) #16	ABHD17A (ENSODEG00000014511) #17	ENSODEG00000013602 #18	REXO1 (ENSODEG00000013331) #19	ATP8B3 (ENSODEG00000013054) #20	ENSODEG00000014280 ##21	ENSODEG00000012942	TCF3 (ENSODEG00000014758) #22	UQCR11 (ENSODEG00000013639) #23	MBD3 (ENSODEG00000012920) #24	MEX3D (ENSODEG00000012631) #25	ENSODEG00000013655 #26	ADAMTSL5 (ENSODEG00000013936) #27	REEP6 (ENSODEG00000014025) #28	PCSK4 (ENSODEG00000013088) #29	C19orf25 (ENSODEG00000012919) #30	APC2 (ENSODEG00000014479) #31	ENSODEG00000013650 #32	DAZAP1 (ENSODEG00000013797) #33	GAMT (ENSODEG00000012437) #34	NDUFS7 (ENSODEG00000012622) #35	PWWP3A (ENSODEG00000012451) #36	ENSODEG00000020201
Guinea pig	MODERN SPECIES	260																TCF3 (ENSCPOG00000023586) #22	UQCR11 (ENSCPOG00000010438) #23	MBD3 (ENSCPOG00000026210) #24	ENSCPOG00000009268 #26	ADAMTSL5 (ENSCPOG00000035531) #27	REEP6 (ENSCPOG00000006605) #28	PCSK4 (ENSCPOG00000009029) #29	C19orf25 (ENSCPOG00000036334) #30	APC2 (ENSCPOG00000021628) #31	ENSCPOG00000003968 #32	DAZAP1 (ENSCPOG00000020185) #33	GAMT (ENSCPOG00000036361) #34	NDUFS7 (ENSCPOG00000036781) #35	PWWP3A (ENSCPOG00000034775) #36	EFNA2 (ENSCPOG00000019291) #37	FAM174C (ENSCPOG00000038035)
Lagomorpha	ANCESTRAL SPECIES	395																ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25
Pika	MODERN SPECIES	3857																ENSOPRG00000008737 #22	UQCR11 (ENSOPRG00000008731) #23	MBD3 (ENSOPRG00000008719) #24	ENSOPRG00000008708 #25
Rabbit	MODERN SPECIES	773														ENSOCUG00000036144	ENSOCUG00000029562	ENSOCUG00000024177 #22
Primates	ANCESTRAL SPECIES	18	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Strepsirrhini	ANCESTRAL SPECIES	26	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT01030000235617	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565.e #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT01030000235617	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565.e #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Mouse lemur	MODERN SPECIES	16	SF3A2 (ENSMICG00000015443)	PLEKHJ1 (ENSMICG00000015433) #7	DOT1L (ENSMICG00000015405) #8	AP3D1 (ENSMICG00000015375) #9	IZUMO4 (ENSMICG00000015347) #10	MOB3A (ENSMICG00000033261) #11	MKNK2 (ENSMICG00000033378) #12	BTBD2 (ENSMICG00000011570) #13	CSNK1G2 (ENSMICG00000004391) #14	SCAMP4 (ENSMICG00000047295) #15	ABHD17A (ENSMICG00000013508) #17	KLF16 (ENSMICG00000044271) #18	REXO1 (ENSMICG00000013476) #19	ATP8B3 (ENSMICG00000013417) #20	ONECUT3 (ENSMICG00000031491) ##21	TCF3 (ENSMICG00000008921) #22	UQCR11 (ENSMICG00000047280) #23	MBD3 (ENSMICG00000000808) #24	MEX3D (ENSMICG00000036648) #25	ENSMICG00000034085 #26	ADAMTSL5 (ENSMICG00000031338) #27	REEP6 (ENSMICG00000032194) #28	PCSK4 (ENSMICG00000038124) #29	ENSMICG00000016127	APC2 (ENSMICG00000029619) #31	ENSMICG00000003586 #32	DAZAP1 (ENSMICG00000003579) #33	GAMT (ENSMICG00000044941) #34	NDUFS7 (ENSMICG00000032987) #35	PWWP3A (ENSMICG00000003892) #36	EFNA2 (ENSMICG00000027470) #37
Lemuriformes_a	ANCESTRAL SPECIES	17	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT01030000235617	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565.e #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Greater bamboo lemur	MODERN SPECIES	235							ENSPSMG00000009200 #14	SCAMP4 (ENSPSMG00000009192) #15	ADAT3 (ENSPSMG00000009175) #16	ABHD17A (ENSPSMG00000009170) #17	ENSPSMG00000009166 #18	REXO1 (ENSPSMG00000009153) #19	ENSPSMG00000009131	ENSPSMG00000009127 #20	ONECUT3 (ENSPSMG00000009114) ##21	TCF3 (ENSPSMG00000008945) #22	UQCR11 (ENSPSMG00000008817) #23	MBD3 (ENSPSMG00000008812) #24	MEX3D (ENSPSMG00000008800) #25	ENSPSMG00000008787 #26	ENSPSMG00000008744 #26	ADAMTSL5 (ENSPSMG00000008733) #27	REEP6 (ENSPSMG00000008710) #28	PCSK4 (ENSPSMG00000008688) #29	ENSPSMG00000008671	APC2 (ENSPSMG00000008665) #31	RPS15 (ENSPSMG00000008637) #32	DAZAP1 (ENSPSMG00000008439) #33	ENSPSMG00000008216 #34	ENSPSMG00000008197 #35
Coquerels sifaka	MODERN SPECIES	334	JSRP1 (ENSPCOG00000022471)	AMH (ENSPCOG00000026957)	SF3A2 (ENSPCOG00000020295)	PLEKHJ1 (ENSPCOG00000025927) #7	DOT1L (ENSPCOG00000021587) #8	AP3D1 (ENSPCOG00000024123) #9	IZUMO4 (ENSPCOG00000024028) #10	MOB3A (ENSPCOG00000010544) #11	MKNK2 (ENSPCOG00000022360) #12	BTBD2 (ENSPCOG00000025411) #13	CSNK1G2 (ENSPCOG00000015810) #14	SCAMP4 (ENSPCOG00000018936) #15	ABHD17A (ENSPCOG00000023714) #17	REXO1 (ENSPCOG00000019892) #19	ATP8B3 (ENSPCOG00000025605) #20	TCF3 (ENSPCOG00000027425) #22	UQCR11 (ENSPCOG00000026328) #23	MBD3 (ENSPCOG00000021647) #24	MEX3D (ENSPCOG00000021111) #25	PLK5 (ENSPCOG00000005454) #26	ADAMTSL5 (ENSPCOG00000020535) #27	REEP6 (ENSPCOG00000000661) #28	PCSK4 (ENSPCOG00000024565) #29	ENSPCOG00000016037	APC2 (ENSPCOG00000023694) #31	ENSPCOG00000026500 #32	DAZAP1 (ENSPCOG00000028522) #33	GAMT (ENSPCOG00000027611) #34	NDUFS7 (ENSPCOG00000016946) #35	PWWP3A (ENSPCOG00000015144) #36	EFNA2 (ENSPCOG00000018875) #37
Bushbaby	MODERN SPECIES	144	PLEKHJ1 (ENSOGAG00000016478) #7	DOT1L (ENSOGAG00000003711) #8	AP3D1 (ENSOGAG00000014366) #9	IZUMO4 (ENSOGAG00000014364) #10	MOB3A (ENSOGAG00000014362) #11	MKNK2 (ENSOGAG00000008046) #12	BTBD2 (ENSOGAG00000005659) #13	ENSOGAG00000013248 #14	SCAMP4 (ENSOGAG00000028724) #15	ADAT3 (ENSOGAG00000013214) #16	ABHD17A (ENSOGAG00000013209) #17	KLF16 (ENSOGAG00000034621) #18	REXO1 (ENSOGAG00000027475) #19	ATP8B3 (ENSOGAG00000015639) #20	ONECUT3 (ENSOGAG00000030667) ##21	TCF3 (ENSOGAG00000003587) #22	UQCR11 (ENSOGAG00000003586) #23	MBD3 (ENSOGAG00000024563) #24	MEX3D (ENSOGAG00000032843) #25	ENSOGAG00000027767 #26	ADAMTSL5 (ENSOGAG00000000237) #27	REEP6 (ENSOGAG00000000236) #28	PCSK4 (ENSOGAG00000029851) #29	APC2 (ENSOGAG00000031543) #31	ENSOGAG00000015776 #32	DAZAP1 (ENSOGAG00000000232) #33	GAMT (ENSOGAG00000032687) #34	NDUFS7 (ENSOGAG00000034777) #35	PWWP3A (ENSOGAG00000003403) #36	EFNA2 (ENSOGAG00000003380) #37	CIRBP (ENSOGAG00000029550)
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Rhinopithecus	ANCESTRAL SPECIES	87	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00910000146348	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Black snub-nosed monkey	MODERN SPECIES	439												ABHD17A (ENSRBIG00000025506) #17	ENSRBIG00000037970 #18	REXO1 (ENSRBIG00000002136) #19	ATP8B3 (ENSRBIG00000042350) #20	TCF3 (ENSRBIG00000029950) #22	UQCR11 (ENSRBIG00000044179) #23	MBD3 (ENSRBIG00000033012) #24	ENSRBIG00000035383 #25	ADAMTSL5 (ENSRBIG00000034521) #27	REEP6 (ENSRBIG00000036585) #28	PCSK4 (ENSRBIG00000035920) #29	C19orf25 (ENSRBIG00000030704) #30	APC2 (ENSRBIG00000035694) #31	ENSRBIG00000041908 #32	DAZAP1 (ENSRBIG00000032485) #33	GAMT (ENSRBIG00000033371) #34	NDUFS7 (ENSRBIG00000038827) #35	PWWP3A (ENSRBIG00000036575) #36	ENSRBIG00000028328 #37	FAM174C (ENSRBIG00000042672)
Golden snub-nosed monkey	MODERN SPECIES	1817	DOT1L (ENSRROG00000045004) #8	AP3D1 (ENSRROG00000031773) #9	ENSRROG00000041314	IZUMO4 (ENSRROG00000042338) #10	MOB3A (ENSRROG00000039364) #11	MKNK2 (ENSRROG00000030837) #12	BTBD2 (ENSRROG00000029615) #13	ENSRROG00000045271 #14	SCAMP4 (ENSRROG00000043168) #15	ENSRROG00000036651	ABHD17A (ENSRROG00000045474) #17	ENSRROG00000044138 #18	REXO1 (ENSRROG00000022002) #19	ATP8B3 (ENSRROG00000039383) #20	ENSRROG00000031907 ##21	TCF3 (ENSRROG00000033174) #22	ENSRROG00000042612	MBD3 (ENSRROG00000043725) #24	PLK5 (ENSRROG00000016360) #26	ADAMTSL5 (ENSRROG00000032945) #27	REEP6 (ENSRROG00000032802) #28	PCSK4 (ENSRROG00000035340) #29	C19orf25 (ENSRROG00000044642) #30	APC2 (ENSRROG00000034571) #31	ENSRROG00000038546 #32	DAZAP1 (ENSRROG00000037347) #33	GAMT (ENSRROG00000031478) #34	NDUFS7 (ENSRROG00000027740) #35	PWWP3A (ENSRROG00000033246) #36	EFNA2 (ENSRROG00000037148) #37	FAM174C (ENSRROG00000043456)
Cercopithecinae	DUPLICATION
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.c.a #22	ENSGT00910000146348	ENSGT00940000157036.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.c.a #22	ENSGT00940000157036.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.c.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Cercopithecinae_d	ANCESTRAL SPECIES	22	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.c.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Sooty mangabey	MODERN SPECIES	177	ENSCATG00000010390 #7	DOT1L (ENSCATG00000038916) #8	ENSCATG00000043416	AP3D1 (ENSCATG00000033383) #9	IZUMO4 (ENSCATG00000037484) #10	MOB3A (ENSCATG00000009409) #11	MKNK2 (ENSCATG00000042358) #12	BTBD2 (ENSCATG00000008762) #13	CSNK1G2 (ENSCATG00000033382) #14	SCAMP4 (ENSCATG00000031098) #15	ABHD17A (ENSCATG00000002146) #17	KLF16 (ENSCATG00000037745) #18	REXO1 (ENSCATG00000030746) #19	ATP8B3 (ENSCATG00000031064) #20	ONECUT3 (ENSCATG00000041421) ##21	ENSCATG00000012828 #22	UQCR11 (ENSCATG00000044468) #23	MBD3 (ENSCATG00000044174) #24	MEX3D (ENSCATG00000029350) #25	PLK5 (ENSCATG00000031596) #26	ADAMTSL5 (ENSCATG00000014430) #27	REEP6 (ENSCATG00000043506) #28	PCSK4 (ENSCATG00000045251) #29	C19orf25 (ENSCATG00000044531) #30	APC2 (ENSCATG00000042966) #31	ENSCATG00000042597 #32	DAZAP1 (ENSCATG00000029559) #33	GAMT (ENSCATG00000040885) #34	NDUFS7 (ENSCATG00000038305) #35	PWWP3A (ENSCATG00000031659) #36	EFNA2 (ENSCATG00000034129) #37
Macaca	ANCESTRAL SPECIES	24	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.d #22	ENSGT00910000146348	ENSGT00940000157036.c.a #22	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37	ENSGT00530000064649
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.d #22	ENSGT00910000146348	ENSGT00940000157036.c.a #22	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00530000063749.c.a #31	ENSGT00390000007991 #30	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37	ENSGT00530000064649
Rhesus	MODERN SPECIES	10	DOT1L (ENSMMUG00000010107) #8	AP3D1 (ENSMMUG00000015663) #9	IZUMO4 (ENSMMUG00000015660) #10	MOB3A (ENSMMUG00000010984) #11	MKNK2 (ENSMMUG00000011265) #12	ENSMMUG00000059725 #13	CSNK1G2 (ENSMMUG00000006620) #14	ADAT3 (ENSMMUG00000049496) #16	SCAMP4 (ENSMMUG00000013747) #15	ABHD17A (ENSMMUG00000016539) #17	KLF16 (ENSMMUG00000047855) #18	REXO1 (ENSMMUG00000002847) #19	ATP8B3 (ENSMMUG00000002846) #20	ONECUT3 (ENSMMUG00000058741) ##21	ENSMMUG00000062449	TCF3 (ENSMMUG00000009017) #22	MBD3 (ENSMMUG00000009014) #24	MEX3D (ENSMMUG00000053206) #25	ENSMMUG00000048694 #26	ADAMTSL5 (ENSMMUG00000003815) #27	REEP6 (ENSMMUG00000003060) #28	PCSK4 (ENSMMUG00000003056) #29	APC2 (ENSMMUG00000003053) #31	RPS15 (ENSMMUG00000061470) #32	GAMT (ENSMMUG00000003046) #34	NDUFS7 (ENSMMUG00000003045) #35	PWWP3A (ENSMMUG00000003043) #36	EFNA2 (ENSMMUG00000051284) #37	FAM174C (ENSMMUG00000022104)	DAZAP1 (ENSMMUG00000003047) #33	MIDN (ENSMMUG00000022100)
Vervet Monkey	MODERN SPECIES	25	SF3A2 (ENSCSAG00000011717)	PLEKHJ1 (ENSCSAG00000011738) #7	DOT1L (ENSCSAG00000011808) #8	AP3D1 (ENSCSAG00000011851) #9	IZUMO4 (ENSCSAG00000011863) #10	MOB3A (ENSCSAG00000011866) #11	MKNK2 (ENSCSAG00000011875) #12	BTBD2 (ENSCSAG00000011880) #13	CSNK1G2 (ENSCSAG00000011891) #14	SCAMP4 (ENSCSAG00000011900) #15	ABHD17A (ENSCSAG00000011907) #17	KLF16 (ENSCSAG00000011915) #18	REXO1 (ENSCSAG00000011926) #19	ATP8B3 (ENSCSAG00000011946) #20	ONECUT3 (ENSCSAG00000011954) ##21	TCF3 (ENSCSAG00000011964) #22	ENSCSAG00000011969	MBD3 (ENSCSAG00000011976) #24	MEX3D (ENSCSAG00000011984) #25	PLK5 (ENSCSAG00000011990) #26	ADAMTSL5 (ENSCSAG00000012011) #27	ENSCSAG00000012019	PCSK4 (ENSCSAG00000012070) #29	C19orf25 (ENSCSAG00000012103) #30	APC2 (ENSCSAG00000018458) #31	RPS15 (ENSCSAG00000012113) #32	DAZAP1 (ENSCSAG00000012126) #33	GAMT (ENSCSAG00000012137) #34	NDUFS7 (ENSCSAG00000012149) #35	PWWP3A (ENSCSAG00000012203) #36	EFNA2 (ENSCSAG00000012229) #37
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000157036.c.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000157036.c.b #22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000157036.c.b #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000157036.c.b #22
Drill	MODERN SPECIES	376																ENSMLEG00000029168 #22
Sooty mangabey	MODERN SPECIES	533																ENSCATG00000014725 #22
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.c.a #22	ENSGT00910000146348	ENSGT00940000157036.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.c.a #22	ENSGT00940000157036.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Macaca	ANCESTRAL SPECIES	24	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.d #22	ENSGT00910000146348	ENSGT00940000157036.c.a #22	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36
Pig-tailed macaque	MODERN SPECIES	76	ENSMNEG00000031778 #7	DOT1L (ENSMNEG00000029107) #8	AP3D1 (ENSMNEG00000031993) #9	IZUMO4 (ENSMNEG00000039524) #10	MOB3A (ENSMNEG00000020359) #11	MKNK2 (ENSMNEG00000005449) #12	BTBD2 (ENSMNEG00000044787) #13	CSNK1G2 (ENSMNEG00000037071) #14	SCAMP4 (ENSMNEG00000038725) #15	ADAT3 (ENSMNEG00000014696) #16	ABHD17A (ENSMNEG00000018607) #17	KLF16 (ENSMNEG00000044693) #18	REXO1 (ENSMNEG00000028828) #19	ATP8B3 (ENSMNEG00000033361) #20	ONECUT3 (ENSMNEG00000032588) ##21	TCF3 (ENSMNEG00000030490) #22	ENSMNEG00000031435	MBD3 (ENSMNEG00000034026) #24	MEX3D (ENSMNEG00000043766) #25	PLK5 (ENSMNEG00000032883) #26	ADAMTSL5 (ENSMNEG00000026449) #27	REEP6 (ENSMNEG00000035742) #28	PCSK4 (ENSMNEG00000027452) #29	C19orf25 (ENSMNEG00000041395) #30	APC2 (ENSMNEG00000032973) #31	ENSMNEG00000028419 #32	DAZAP1 (ENSMNEG00000040014) #33	GAMT (ENSMNEG00000043692) #34	NDUFS7 (ENSMNEG00000038929) #35	PWWP3A (ENSMNEG00000018556) #36	EFNA2 (ENSMNEG00000039786) #37
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.d #22	ENSGT00910000146348	ENSGT00940000157036.c.a #22	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00530000063749.c.a #31	ENSGT00390000007991 #30	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36
Crab-eating macaque	MODERN SPECIES	10	SF3A2 (ENSMFAG00000002638)	PLEKHJ1 (ENSMFAG00000034618) #7	ENSMFAG00000049331 #8	AP3D1 (ENSMFAG00000033202) #9	IZUMO4 (ENSMFAG00000044044) #10	ENSMFAG00000003334 #11	MKNK2 (ENSMFAG00000037079) #12	BTBD2 (ENSMFAG00000003638) #13	ENSMFAG00000060215	ENSMFAG00000062602	SCAMP4 (ENSMFAG00000047177) #15	ENSMFAG00000051795 #18	ENSMFAG00000000498 #19	ATP8B3 (ENSMFAG00000030115) #20	ENSMFAG00000052194	TCF3 (ENSMFAG00000032612) #22	ENSMFAG00000057699	MBD3 (ENSMFAG00000044264) #24	PLK5 (ENSMFAG00000002051) #26	ENSMFAG00000036443 #27	REEP6 (ENSMFAG00000046016) #28	ENSMFAG00000027143 #30	ENSMFAG00000031749 #32	DAZAP1 (ENSMFAG00000000789) #33	GAMT (ENSMFAG00000041341) #34	ENSMFAG00000002461 #35	PWWP3A (ENSMFAG00000039690) #36	EFNA2 (ENSMFAG00000036658) #37	FAM174C (ENSMFAG00000043438)	CIRBP (ENSMFAG00000034048)	MIDN (ENSMFAG00000043242)
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000157036.d #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000157036.d #22
Drill	MODERN SPECIES	1236	OAZ1 (ENSMLEG00000031485)	JSRP1 (ENSMLEG00000043114)	ENSMLEG00000016225	PLEKHJ1 (ENSMLEG00000025106) #7	DOT1L (ENSMLEG00000039660) #8	AP3D1 (ENSMLEG00000029244) #9	ENSMLEG00000034447	IZUMO4 (ENSMLEG00000032686) #10	MKNK2 (ENSMLEG00000034344) #12	BTBD2 (ENSMLEG00000000820) #13	CSNK1G2 (ENSMLEG00000028648) #14	SCAMP4 (ENSMLEG00000034450) #15	ABHD17A (ENSMLEG00000042961) #17	REXO1 (ENSMLEG00000040971) #19	ATP8B3 (ENSMLEG00000030996) #20	ENSMLEG00000027602 #22	UQCR11 (ENSMLEG00000032134) #23	MBD3 (ENSMLEG00000038720) #24	ENSMLEG00000026857 #26	ADAMTSL5 (ENSMLEG00000039148) #27	PCSK4 (ENSMLEG00000019265) #29	C19orf25 (ENSMLEG00000042233) #30	APC2 (ENSMLEG00000036443) #31	ENSMLEG00000016828 #32	DAZAP1 (ENSMLEG00000035079) #33	GAMT (ENSMLEG00000036015) #34	NDUFS7 (ENSMLEG00000022660) #35	PWWP3A (ENSMLEG00000034210) #36	CIRBP (ENSMLEG00000038347)	MIDN (ENSMLEG00000043732)	ATP5F1D (ENSMLEG00000003687)
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.t.b #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00910000148644	ENSGT00390000001700.a.a #36
Gibbon	MODERN SPECIES	7	PEAK3 (ENSNLEG00000002255)	OAZ1 (ENSNLEG00000002179)	JSRP1 (ENSNLEG00000002155)	ENSNLEG00000028884	ENSNLEG00000033384	ENSNLEG00000002134 #7	ENSNLEG00000002122 #8	AP3D1 (ENSNLEG00000002065) #9	ENSNLEG00000031927	IZUMO4 (ENSNLEG00000002023) #10	MOB3A (ENSNLEG00000002016) #11	ENSNLEG00000002013 #12	ADAT3 (ENSNLEG00000001999) #16	REXO1 (ENSNLEG00000001908) #19	ENSNLEG00000001905 #20	TCF3 (ENSNLEG00000001742) #22	UQCR11 (ENSNLEG00000032464) #23	MBD3 (ENSNLEG00000001734) #24	ENSNLEG00000001719 #25	PLK5 (ENSNLEG00000001698) #26	ADAMTSL5 (ENSNLEG00000001690) #27	ENSNLEG00000030458 #28	ENSNLEG00000001682 #29	ENSNLEG00000001680 #30	APC2 (ENSNLEG00000001665) #31	ENSNLEG00000034934 #32	DAZAP1 (ENSNLEG00000001563) #33	ENSNLEG00000028017 #35	PWWP3A (ENSNLEG00000028938) #36	ENSNLEG00000001551	ENSNLEG00000036106 #37
Hominidae	ANCESTRAL SPECIES		ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.t.b #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00910000148644	ENSGT00390000001700.a.a #36
Orangutan	MODERN SPECIES	10	ENSPPYG00000009341 #7	DOT1L (ENSPPYG00000009340) #8	AP3D1 (ENSPPYG00000009339) #9	IZUMO4 (ENSPPYG00000009338) #10	MOB3A (ENSPPYG00000009337) #11	MKNK2 (ENSPPYG00000009336) #12	BTBD2 (ENSPPYG00000009335) #13	CSNK1G2 (ENSPPYG00000009334) #14	ENSPPYG00000009333	SCAMP4 (ENSPPYG00000009332) #15	ABHD17A (ENSPPYG00000009331) #17	ENSPPYG00000035888 #18	REXO1 (ENSPPYG00000009330) #19	ATP8B3 (ENSPPYG00000009329) #20	ONECUT3 (ENSPPYG00000040175) ##21	TCF3 (ENSPPYG00000009327) #22	UQCR (ENSPPYG00000009326)	MBD3 (ENSPPYG00000034186) #24	MEX3D (ENSPPYG00000009324) #25	PLK5 (ENSPPYG00000009323) #26	ADAMTSL5 (ENSPPYG00000009322) #27	REEP6 (ENSPPYG00000009321) #28	PCSK4 (ENSPPYG00000009320) #29	C19orf25 (ENSPPYG00000030407) #30	APC2 (ENSPPYG00000009318) #31	RPS15 (ENSPPYG00000040762) #32	DAZAP1 (ENSPPYG00000009316) #33	GAMT (ENSPPYG00000009315) #34	NDUFS7 (ENSPPYG00000009314) #35	ENSPPYG00000031336	PWWP3A (ENSPPYG00000029807) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p.b.b #17	ENSGT00940000155854.p.b.a.a #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.t.b #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Gorilla	MODERN SPECIES	10	DOT1L (ENSGGOG00000006592) #8	ENSGGOG00000037964	AP3D1 (ENSGGOG00000006580) #9	IZUMO4 (ENSGGOG00000006577) #10	MOB3A (ENSGGOG00000011201) #11	MKNK2 (ENSGGOG00000027137) #12	ENSGGOG00000007717 #13	ENSGGOG00000006155	ENSGGOG00000039429	SCAMP4 (ENSGGOG00000024198) #15	ENSGGOG00000037562 #17	ENSGGOG00000038452 #18	REXO1 (ENSGGOG00000009009) #19	ATP8B3 (ENSGGOG00000008991) #20	ENSGGOG00000008983 ##21	TCF3 (ENSGGOG00000003667) #22	ENSGGOG00000002757	ENSGGOG00000012396 #24	ENSGGOG00000001083 #25	PLK5 (ENSGGOG00000012910) #26	ADAMTSL5 (ENSGGOG00000011619) #27	REEP6 (ENSGGOG00000007316) #28	ENSGGOG00000007307 #29	ENSGGOG00000002832 #30	APC2 (ENSGGOG00000002822) #31	ENSGGOG00000002818 #32	DAZAP1 (ENSGGOG00000002814) #33	ENSGGOG00000002809 #34	ENSGGOG00000002804 #35	PWWP3A (ENSGGOG00000002798) #36	ENSGGOG00000002341 #37
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p.b.b #17	ENSGT00940000155854.p.b.a.a #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.u.e #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Human	MODERN SPECIES	10	PLEKHJ1 (ENSG00000104886) #7	DOT1L (ENSG00000104885) #8	AP3D1 (ENSG00000065000) #9	IZUMO4 (ENSG00000099840) #10	MOB3A (ENSG00000172081) #11	MKNK2 (ENSG00000099875) #12	BTBD2 (ENSG00000133243) #13	CSNK1G2 (ENSG00000133275) #14	ADAT3 (ENSG00000213638) #16	SCAMP4 (ENSG00000227500) #15	ABHD17A (ENSG00000129968) #17	KLF16 (ENSG00000129911) #18	REXO1 (ENSG00000079313) #19	ATP8B3 (ENSG00000130270) #20	ONECUT3 (ENSG00000205922) ##21	TCF3 (ENSG00000071564) #22	UQCR11 (ENSG00000127540) #23	MBD3 (ENSG00000071655) #24	MEX3D (ENSG00000181588) #25	PLK5 (ENSG00000185988) #26	ADAMTSL5 (ENSG00000185761) #27	REEP6 (ENSG00000115255) #28	PCSK4 (ENSG00000115257) #29	C19orf25 (ENSG00000119559) #30	APC2 (ENSG00000115266) #31	RPS15 (ENSG00000115268) #32	DAZAP1 (ENSG00000071626) #33	GAMT (ENSG00000130005) #34	NDUFS7 (ENSG00000115286) #35	PWWP3A (ENSG00000160953) #36	EFNA2 (ENSG00000099617) #37
Pan	ANCESTRAL SPECIES	14	ENSGT00550000075067 #9	ENSGT00910000147114	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00910000146653	ENSGT01050000245447	ENSGT00940000162150 #15	ENSGT00940000155854.p.b.a.a #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00910000146348	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb.t.b #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Chimpanzee	MODERN SPECIES	10	AP3D1 (ENSPTRG00000010223) #9	IZUMO4 (ENSPTRG00000010222) #10	MOB3A (ENSPTRG00000010221) #11	MKNK2 (ENSPTRG00000010220) #12	BTBD2 (ENSPTRG00000010219) #13	ENSPTRG00000010217	CSNK1G2 (ENSPTRG00000010218) #14	ENSPTRG00000049845	SCAMP4 (ENSPTRG00000042465) #15	ABHD17A (ENSPTRG00000010215) #17	ENSPTRG00000049033 #18	REXO1 (ENSPTRG00000010213) #19	ATP8B3 (ENSPTRG00000047280) #20	ONECUT3 (ENSPTRG00000045423) ##21	ENSPTRG00000050650	TCF3 (ENSPTRG00000010211) #22	ENSPTRG00000010210	MBD3 (ENSPTRG00000010209) #24	MEX3D (ENSPTRG00000010208) #25	PLK5 (ENSPTRG00000052226) #26	ADAMTSL5 (ENSPTRG00000023147) #27	PCSK4 (ENSPTRG00000010204) #29	ENSPTRG00000010203	APC2 (ENSPTRG00000051842) #31	ENSPTRG00000010200 #32	DAZAP1 (ENSPTRG00000010199) #33	GAMT (ENSPTRG00000010198) #34	NDUFS7 (ENSPTRG00000010196) #35	PWWP3A (ENSPTRG00000010195) #36	EFNA2 (ENSPTRG00000029192) #37	FAM174C (ENSPTRG00000010194)
Bonobo	MODERN SPECIES	10	DOT1L (ENSPPAG00000033986) #8	AP3D1 (ENSPPAG00000037152) #9	ENSPPAG00000029806	IZUMO4 (ENSPPAG00000042151) #10	MOB3A (ENSPPAG00000040771) #11	MKNK2 (ENSPPAG00000041658) #12	ENSPPAG00000034042 #13	ENSPPAG00000026831 #14	ENSPPAG00000034367	ENSPPAG00000030727	SCAMP4 (ENSPPAG00000030995) #15	ADAT3 (ENSPPAG00000041771) #16	ENSPPAG00000034069 #17	REXO1 (ENSPPAG00000035735) #19	ENSPPAG00000043448 #20	TCF3 (ENSPPAG00000040276) #22	ENSPPAG00000030284	MBD3 (ENSPPAG00000031282) #24	PLK5 (ENSPPAG00000025685) #26	ENSPPAG00000042942 #27	REEP6 (ENSPPAG00000030448) #28	PCSK4 (ENSPPAG00000034233) #29	ENSPPAG00000027336 #30	ENSPPAG00000013749 #31	ENSPPAG00000015902 #32	DAZAP1 (ENSPPAG00000033205) #33	ENSPPAG00000039491 #34	NDUFS7 (ENSPPAG00000005538) #35	PWWP3A (ENSPPAG00000025003) #36	ENSPPAG00000044080	ENSPPAG00000044065
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00720000108823.g	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067.z #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470.i #14	ENSGT00940000162150 #15	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613.b #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565.g #35	ENSGT00390000001700.a.a.i #36	ENSGT00940000160040.B #37
Mas night monkey	MODERN SPECIES	937	AMH (ENSANAG00000031784)	ENSANAG00000029477	PLEKHJ1 (ENSANAG00000038348) #7	DOT1L (ENSANAG00000026868) #8	AP3D1 (ENSANAG00000028148) #9	IZUMO4 (ENSANAG00000030921) #10	MOB3A (ENSANAG00000038176) #11	MKNK2 (ENSANAG00000037709) #12	BTBD2 (ENSANAG00000026816) #13	CSNK1G2 (ENSANAG00000034726) #14	SCAMP4 (ENSANAG00000031779) #15	ABHD17A (ENSANAG00000028521) #17	KLF16 (ENSANAG00000030532) #18	REXO1 (ENSANAG00000036896) #19	ENSANAG00000031845 #20	TCF3 (ENSANAG00000021796) #22	UQCR11 (ENSANAG00000026019) #23	MBD3 (ENSANAG00000026084) #24	ENSANAG00000029352 #25	ADAMTSL5 (ENSANAG00000024837) #27	REEP6 (ENSANAG00000028787) #28	PCSK4 (ENSANAG00000024353) #29	C19orf25 (ENSANAG00000032897) #30	APC2 (ENSANAG00000037775) #31	ENSANAG00000034317 #32	DAZAP1 (ENSANAG00000036160) #33	GAMT (ENSANAG00000035363) #34	ENSANAG00000029757 #35	PWWP3A (ENSANAG00000026888) #36	EFNA2 (ENSANAG00000022997) #37	FAM174C (ENSANAG00000020672)
Cebidae	ANCESTRAL SPECIES	20	ENSGT00720000108823.g	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067.z #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470.i #14	ENSGT00940000162150 #15	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613.b #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565.g #35	ENSGT00390000001700.a.a.j #36	ENSGT00390000001700.a.a.i #36
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067.z #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470.i #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854.p #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613.a #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.sb #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565.g #35	ENSGT00390000001700.a.a.j #36	ENSGT00940000160040.B #37
Capuchin	MODERN SPECIES	523			AP3D1 (ENSCCAG00000029351) #9	IZUMO4 (ENSCCAG00000020629) #10	MOB3A (ENSCCAG00000033887) #11	MKNK2 (ENSCCAG00000024690) #12	BTBD2 (ENSCCAG00000034374) #13	ENSCCAG00000037256 #14	SCAMP4 (ENSCCAG00000022838) #15	ENSCCAG00000037251	ABHD17A (ENSCCAG00000015020) #17	KLF16 (ENSCCAG00000032470) #18	REXO1 (ENSCCAG00000023485) #19	ATP8B3 (ENSCCAG00000035977) #20	ONECUT3 (ENSCCAG00000021408) ##21	TCF3 (ENSCCAG00000034519) #22	UQCR11 (ENSCCAG00000035945) #23	MBD3 (ENSCCAG00000026526) #24	MEX3D (ENSCCAG00000028942) #25	PLK5 (ENSCCAG00000027893) #26	ADAMTSL5 (ENSCCAG00000030768) #27	ENSCCAG00000027022	PCSK4 (ENSCCAG00000034282) #29	C19orf25 (ENSCCAG00000030708) #30	APC2 (ENSCCAG00000032921) #31	ENSCCAG00000037411 #32	DAZAP1 (ENSCCAG00000023519) #33	GAMT (ENSCCAG00000015858) #34	NDUFS7 (ENSCCAG00000022281) #35	PWWP3A (ENSCCAG00000033218) #36	FAM174C (ENSCCAG00000013971)
Bolivian squirrel monkey	MODERN SPECIES	257																TCF3 (ENSSBOG00000030851) #22	UQCR11 (ENSSBOG00000032342) #23	MBD3 (ENSSBOG00000031286) #24	ADAMTSL5 (ENSSBOG00000021903) #27	REEP6 (ENSSBOG00000020437) #28	PCSK4 (ENSSBOG00000024249) #29	C19orf25 (ENSSBOG00000010299) #30	APC2 (ENSSBOG00000021621) #31	ENSSBOG00000024826 #32	DAZAP1 (ENSSBOG00000021919) #33	GAMT (ENSSBOG00000027810) #34	NDUFS7 (ENSSBOG00000019157) #35	ENSSBOG00000021211 #36	EFNA2 (ENSSBOG00000022012) #37	CIRBP (ENSSBOG00000021043)	MIDN (ENSSBOG00000029421)
Marmoset	MODERN SPECIES	14	JSRP1 (ENSCJAG00000013217)	AMH (ENSCJAG00000013212)	SF3A2 (ENSCJAG00000013206)	PLEKHJ1 (ENSCJAG00000041206) #7	DOT1L (ENSCJAG00000013182) #8	AP3D1 (ENSCJAG00000013091) #9	IZUMO4 (ENSCJAG00000013059) #10	MOB3A (ENSCJAG00000013051) #11	MKNK2 (ENSCJAG00000000539) #12	BTBD2 (ENSCJAG00000021486) #13	SCAMP4 (ENSCJAG00000021478) #15	ABHD17A (ENSCJAG00000036983) #17	KLF16 (ENSCJAG00000042076) #18	REXO1 (ENSCJAG00000021468) #19	ATP8B3 (ENSCJAG00000082985) #20	TCF3 (ENSCJAG00000004642) #22	UQCR11 (ENSCJAG00000075823) #23	MBD3 (ENSCJAG00000073603) #24	MEX3D (ENSCJAG00000084941) #25	ENSCJAG00000084898 #26	ADAMTSL5 (ENSCJAG00000038452) #27	REEP6 (ENSCJAG00000005705) #28	C19orf25 (ENSCJAG00000038129) #30	APC2 (ENSCJAG00000075116) #31	RPS15 (ENSCJAG00000005632) #32	GAMT (ENSCJAG00000005596) #34	NDUFS7 (ENSCJAG00000005587) #35	PWWP3A (ENSCJAG00000005556) #36	EFNA2 (ENSCJAG00000086835) #37	FAM174C (ENSCJAG00000005541)	ENSCJAG00000005609
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Suina	ANCESTRAL SPECIES	16	ENSGT00390000006337	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Chacoan peccary	MODERN SPECIES	770	SF3A2 (ENSCWAG00000016402)	AMH (ENSCWAG00000016349)	JSRP1 (ENSCWAG00000016309)	AP3D1 (ENSCWAG00000016236) #9	IZUMO4 (ENSCWAG00000015925) #10	MOB3A (ENSCWAG00000015887) #11	MKNK2 (ENSCWAG00000015852) #12	BTBD2 (ENSCWAG00000015791) #13	CSNK1G2 (ENSCWAG00000015761) #14	SCAMP4 (ENSCWAG00000015682) #15	ABHD17A (ENSCWAG00000015617) #17	KLF16 (ENSCWAG00000015558) #18	REXO1 (ENSCWAG00000015439) #19	ENSCWAG00000014928 #20	ONECUT3 (ENSCWAG00000014770) ##21	TCF3 (ENSCWAG00000014525) #22	UQCR11 (ENSCWAG00000014466) #23	MBD3 (ENSCWAG00000014384) #24	MEX3D (ENSCWAG00000014340) #25	PLK5 (ENSCWAG00000014192) #26	ADAMTSL5 (ENSCWAG00000014096) #27	REEP6 (ENSCWAG00000014026) #28	PCSK4 (ENSCWAG00000013794) #29	C19orf25 (ENSCWAG00000013761) #30	ENSCWAG00000013722	APC2 (ENSCWAG00000013268) #31	RPS15 (ENSCWAG00000013141) #32	DAZAP1 (ENSCWAG00000013027) #33	GAMT (ENSCWAG00000012935) #34	NDUFS7 (ENSCWAG00000012869) #35	PWWP3A (ENSCWAG00000012809) #36
Pig	MODERN SPECIES	10	AMH (ENSSSCG00000035812)	JSRP1 (ENSSSCG00000031899)	AP3D1 (ENSSSCG00000040157) #9	IZUMO4 (ENSSSCG00000013455) #10	MOB3A (ENSSSCG00000032366) #11	MKNK2 (ENSSSCG00000013448) #12	BTBD2 (ENSSSCG00000013444) #13	CSNK1G2 (ENSSSCG00000013445) #14	SCAMP4 (ENSSSCG00000013446) #15	ADAT3 (ENSSSCG00000038810) #16	ABHD17A (ENSSSCG00000013442) #17	KLF16 (ENSSSCG00000024672) #18	REXO1 (ENSSSCG00000040624) #19	ATP8B3 (ENSSSCG00000013440) #20	ONECUT3 (ENSSSCG00000013439) ##21	TCF3 (ENSSSCG00000013437) #22	UQCR11 (ENSSSCG00000013436) #23	MBD3 (ENSSSCG00000013435) #24	MEX3D (ENSSSCG00000021750) #25	ENSSSCG00000013434 #26	ADAMTSL5 (ENSSSCG00000013433) #27	ENSSSCG00000026387	PCSK4 (ENSSSCG00000024379) #29	C19orf25 (ENSSSCG00000022265) #30	APC2 (ENSSSCG00000023329) #31	RPS15 (ENSSSCG00000033169) #32	DAZAP1 (ENSSSCG00000013427) #33	GAMT (ENSSSCG00000023142) #34	ENSSSCG00000024144 #35	PWWP3A (ENSSSCG00000013426) #36	EFNA2 (ENSSSCG00000038701) #37
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.db #23	ENSGT00950000183005.b.d #24	ENSGT00390000001201	ENSGT00940000160384	ENSGT00940000160036	ENSGT00940000159258	ENSGT00950000183102.A.a	ENSGT01030000234559.a.a.a	ENSGT00730000111899	ENSGT00390000003420.b	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282	ENSGT00950000183104.B.a.a	ENSGT00500000044957
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.db #23	ENSGT00950000183005.b.d #24	ENSGT00390000001201	ENSGT00940000160384	ENSGT00940000160036	ENSGT00940000159258	ENSGT00950000183102.A.a	ENSGT01030000234559.a.a.a	ENSGT00730000111899	ENSGT00390000003420.b	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282	ENSGT00950000183104.B.a.a	ENSGT00500000044957
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000006337	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.db #23	ENSGT00950000183005.b.d #24	ENSGT00390000001201	ENSGT00940000160384	ENSGT00940000160036	ENSGT00940000159258	ENSGT00950000183102.A.a	ENSGT01030000234559.a.a.a	ENSGT00730000111899	ENSGT00390000003420.b	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282.d	ENSGT00950000183104.B.a.a	ENSGT00500000044957
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000006337	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.db #23	ENSGT00950000183005.b.d #24	ENSGT00390000001201	ENSGT00940000160384	ENSGT00940000160036	ENSGT00940000159258	ENSGT00950000183102.A.a	ENSGT01030000234559.a.a.a	ENSGT00730000111899	ENSGT00390000003420.b	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282.d	ENSGT00950000183104.B.a.a	ENSGT00500000044957
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00720000108823	ENSGT00390000006337	ENSGT01000000221461	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.db #23	ENSGT00950000183005.b.d #24	ENSGT00390000001201	ENSGT00940000160384	ENSGT00940000160036	ENSGT00940000159258	ENSGT00950000183102.A.a	ENSGT01030000234559.a.a.a	ENSGT00730000111899	ENSGT00390000003420.b	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282.d	ENSGT00950000183104.B.a.a	ENSGT00500000044957
Narwhal	MODERN SPECIES	298	PLEKHJ1 (ENSMMNG00015003331) #7	SF3A2 (ENSMMNG00015003365)	AMH (ENSMMNG00015003387)	ENSMMNG00015003406	AP3D1 (ENSMMNG00015003439) #9	IZUMO4 (ENSMMNG00015003549) #10	MOB3A (ENSMMNG00015003604) #11	MKNK2 (ENSMMNG00015003637) #12	BTBD2 (ENSMMNG00015003741) #13	CSNK1G2 (ENSMMNG00015003886) #14	SCAMP4 (ENSMMNG00015000070) #15	ENSMMNG00015000114 #17	ENSMMNG00015000140 #18	REXO1 (ENSMMNG00015000180) #19	ENSMMNG00015000241 #20	TCF3 (ENSMMNG00015000337) #22	ENSMMNG00015000426 #23	MBD3 (ENSMMNG00015000454) #24	MRPL54 (ENSMMNG00015000490)	APBA3 (ENSMMNG00015000514)	TJP3 (ENSMMNG00015000585)	PIP5K1C (ENSMMNG00015000718)	CACTIN (ENSMMNG00015000805)	TBXA2R (ENSMMNG00015000841)	ENSMMNG00015000865	GIPC3 (ENSMMNG00015000888)	HMG20B (ENSMMNG00015000925)	MFSD12 (ENSMMNG00015000990)	TEKTIP1 (ENSMMNG00015001041)	FZR1 (ENSMMNG00015001082)	DOHH (ENSMMNG00015001138)
Beluga whale	MODERN SPECIES	62	AMH (ENSDLEG00000015995)	ENSDLEG00000015965	ENSDLEG00000015955	AP3D1 (ENSDLEG00000015906) #9	IZUMO4 (ENSDLEG00000015890) #10	MOB3A (ENSDLEG00000015881) #11	MKNK2 (ENSDLEG00000015840) #12	BTBD2 (ENSDLEG00000015821) #13	CSNK1G2 (ENSDLEG00000015733) #14	SCAMP4 (ENSDLEG00000015708) #15	ABHD17A (ENSDLEG00000015692) #17	KLF16 (ENSDLEG00000015688) #18	REXO1 (ENSDLEG00000015623) #19	ENSDLEG00000015609 #20	ONECUT3 (ENSDLEG00000015601) ##21	TCF3 (ENSDLEG00000015541) #22	ENSDLEG00000015534 #23	MBD3 (ENSDLEG00000015523) #24	MRPL54 (ENSDLEG00000015510)	APBA3 (ENSDLEG00000015494)	TJP3 (ENSDLEG00000015460)	PIP5K1C (ENSDLEG00000015428)	CACTIN (ENSDLEG00000015406)	TBXA2R (ENSDLEG00000015397)	GIPC3 (ENSDLEG00000015384)	HMG20B (ENSDLEG00000015376)	MFSD12 (ENSDLEG00000015360)	ENSDLEG00000015356	FZR1 (ENSDLEG00000020434)	DOHH (ENSDLEG00000020431)	ENSDLEG00000020426
Vaquita	MODERN SPECIES	14	SF3A2 (ENSPSNG00000017010)	AMH (ENSPSNG00000017056)	JSRP1 (ENSPSNG00000017139)	AP3D1 (ENSPSNG00000017249) #9	ENSPSNG00000017407 #10	MOB3A (ENSPSNG00000017473) #11	MKNK2 (ENSPSNG00000017526) #12	BTBD2 (ENSPSNG00000017611) #13	CSNK1G2 (ENSPSNG00000017726) #14	SCAMP4 (ENSPSNG00000017791) #15	ADAT3 (ENSPSNG00000017868) #16	ENSPSNG00000017887 #17	KLF16 (ENSPSNG00000017960) #18	REXO1 (ENSPSNG00000018002) #19	ONECUT3 (ENSPSNG00000018126) ##21	TCF3 (ENSPSNG00000018208) #22	MBD3 (ENSPSNG00000018406) #24	MRPL54 (ENSPSNG00000018508)	APBA3 (ENSPSNG00000018571)	TJP3 (ENSPSNG00000018690)	PIP5K1C (ENSPSNG00000019044)	CACTIN (ENSPSNG00000019192)	TBXA2R (ENSPSNG00000019240)	ENSPSNG00000009640	GIPC3 (ENSPSNG00000009792)	HMG20B (ENSPSNG00000009908)	MFSD12 (ENSPSNG00000009980)	TEKTIP1 (ENSPSNG00000010156)	FZR1 (ENSPSNG00000010251)	DOHH (ENSPSNG00000010352)	NFIC (ENSPSNG00000010514)
Dolphin	MODERN SPECIES	3261																TCF3 (ENSTTRG00000004417) #22	ENSTTRG00000004414	MBD3 (ENSTTRG00000004412) #24	MRPL54 (ENSTTRG00000004410)	APBA3 (ENSTTRG00000004405)	TJP3 (ENSTTRG00000004394)
Sperm whale	MODERN SPECIES	11	LMNB2 (ENSPCTG00005020173)	OAZ1 (ENSPCTG00005020113)	DOT1L (ENSPCTG00005020060) #8	PLEKHJ1 (ENSPCTG00005019976) #7	ENSPCTG00005019945	AMH (ENSPCTG00005019873)	JSRP1 (ENSPCTG00005019813)	CSNK1G2 (ENSPCTG00005019775) #14	BTBD2 (ENSPCTG00005019674) #13	MOB3A (ENSPCTG00005019638) #11	ENSPCTG00005019585 #15	ADAT3 (ENSPCTG00005019576) #16	ABHD17A (ENSPCTG00005019527) #17	KLF16 (ENSPCTG00005019503) #18	ONECUT3 (ENSPCTG00005019483) ##21	TCF3 (ENSPCTG00005019427) #22	ENSPCTG00005019396 #23	MBD3 (ENSPCTG00005019289) #24	MRPL54 (ENSPCTG00005019236)	APBA3 (ENSPCTG00005019206)	ENSPCTG00005019177	ENSPCTG00005019154 #15	PIP5K1C (ENSPCTG00005019009)	TLE2 (ENSPCTG00005018210)	TLE5 (ENSPCTG00005018020)	ENSPCTG00005017955	DOHH (ENSPCTG00005017916)	SMIM24 (ENSPCTG00005017813)	NFIC (ENSPCTG00005017610)	ENSPCTG00005017573	ENSPCTG00005017562
Blue whale	MODERN SPECIES	14	PLEKHJ1 (ENSBMSG00010009086) #7	SF3A2 (ENSBMSG00010009060)	AMH (ENSBMSG00010009045)	JSRP1 (ENSBMSG00010009029)	AP3D1 (ENSBMSG00010008996) #9	IZUMO4 (ENSBMSG00010008921) #10	MOB3A (ENSBMSG00010008890) #11	MKNK2 (ENSBMSG00010008792) #12	BTBD2 (ENSBMSG00010008773) #13	CSNK1G2 (ENSBMSG00010008746) #14	SCAMP4 (ENSBMSG00010008730) #15	ENSBMSG00010008713 #17	REXO1 (ENSBMSG00010008687) #19	ATP8B3 (ENSBMSG00010008534) #20	ONECUT3 (ENSBMSG00010008489) ##21	TCF3 (ENSBMSG00010008426) #22	MBD3 (ENSBMSG00010008380) #24	MRPL54 (ENSBMSG00010008367)	APBA3 (ENSBMSG00010008350)	TJP3 (ENSBMSG00010008320)	PIP5K1C (ENSBMSG00010008234)	CACTIN (ENSBMSG00010008209)	TBXA2R (ENSBMSG00010008203)	GIPC3 (ENSBMSG00010008191)	HMG20B (ENSBMSG00010008175)	MFSD12 (ENSBMSG00010008150)	FZR1 (ENSBMSG00010008072)	DOHH (ENSBMSG00010008048)	ENSBMSG00010007983	NFIC (ENSBMSG00010007764)	CELF5 (ENSBMSG00010007695)
Pecora	ANCESTRAL SPECIES		ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Yarkand deer	MODERN SPECIES	32	HSPA4 (ENSCHYG00000013342)	ENSCHYG00000013195	AFF4 (ENSCHYG00000012961)	LEAP2 (ENSCHYG00000012912)	UQCRQ (ENSCHYG00000012886)	GDF9 (ENSCHYG00000012848)	SHROOM1 (ENSCHYG00000012543)	SOWAHA (ENSCHYG00000012503)	BTBD2 (ENSCHYG00000012402) #13	CSNK1G2 (ENSCHYG00000012240) #14	SCAMP4 (ENSCHYG00000012163) #15	ABHD17A (ENSCHYG00000012056) #17	ENSCHYG00000012027 #18	REXO1 (ENSCHYG00000011774) #19	ATP8B3 (ENSCHYG00000011251) #20	TCF3 (ENSCHYG00000010747) #22	MBD3 (ENSCHYG00000010565) #24	MEX3D (ENSCHYG00000010512) #25	ENSCHYG00000010460 #26	ADAMTSL5 (ENSCHYG00000010336) #27	REEP6 (ENSCHYG00000010281) #28	PCSK4 (ENSCHYG00000010186) #29	ENSCHYG00000010126 #30	APC2 (ENSCHYG00000009962) #31	ENSCHYG00000009799 #32	DAZAP1 (ENSCHYG00000009522) #33	GAMT (ENSCHYG00000009404) #34	NDUFS7 (ENSCHYG00000009337) #35	PWWP3A (ENSCHYG00000009248) #36	EFNA2 (ENSCHYG00000009190) #37	FAM174C (ENSCHYG00000009148)
Percora_a	ANCESTRAL SPECIES		ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.bb #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Siberian musk deer	MODERN SPECIES	49	ZCCHC10 (ENSMMSG00000015618)	AFF4 (ENSMMSG00000015669)	LEAP2 (ENSMMSG00000015759)	UQCRQ (ENSMMSG00000015786)	GDF9 (ENSMMSG00000015798)	SHROOM1 (ENSMMSG00000015817)	ENSMMSG00000015926 #23	BTBD2 (ENSMMSG00000015949) #13	CSNK1G2 (ENSMMSG00000015996) #14	SCAMP4 (ENSMMSG00000016040) #15	ABHD17A (ENSMMSG00000016084) #17	KLF16 (ENSMMSG00000016148) #18	REXO1 (ENSMMSG00000016192) #19	ATP8B3 (ENSMMSG00000016278) #20	ONECUT3 (ENSMMSG00000016423) ##21	TCF3 (ENSMMSG00000016463) #22	ENSMMSG00000016694 #23	MBD3 (ENSMMSG00000016718) #24	MEX3D (ENSMMSG00000016790) #25	ENSMMSG00000016838 #26	ADAMTSL5 (ENSMMSG00000016856) #27	REEP6 (ENSMMSG00000016902) #28	PCSK4 (ENSMMSG00000016961) #29	C19orf25 (ENSMMSG00000017161) #30	APC2 (ENSMMSG00000017190) #31	ENSMMSG00000017271 #32	DAZAP1 (ENSMMSG00000017306) #33	GAMT (ENSMMSG00000017365) #34	NDUFS7 (ENSMMSG00000017433) #35	PWWP3A (ENSMMSG00000017461) #36	EFNA2 (ENSMMSG00000017476) #37
Bovidae	ANCESTRAL SPECIES		ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.bb #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.ac #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Caprinae	ANCESTRAL SPECIES	3	ENSGT00950000182974.a.a.b	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00390000018299.cb #23	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00390000010706 #16	ENSGT00940000162150 #15	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.bb #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.ac #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Rambouillet Sheep	MODERN SPECIES	21	ZCCHC10 (ENSOARG00020021393)	AFF4 (ENSOARG00020021183)	LEAP2 (ENSOARG00020021152)	UQCRQ (ENSOARG00020021124)	GDF9 (ENSOARG00020021050)	SHROOM1 (ENSOARG00020020980)	ENSOARG00020020953 #23	BTBD2 (ENSOARG00020020888) #13	CSNK1G2 (ENSOARG00020020862) #14	ADAT3 (ENSOARG00020020822) #16	SCAMP4 (ENSOARG00020020721) #15	ABHD17A (ENSOARG00020020656) #17	ENSOARG00020020598 #18	ATP8B3 (ENSOARG00020019584) #20	ONECUT3 (ENSOARG00020019503) ##21	TCF3 (ENSOARG00020018273) #22	ENSOARG00020018193 #23	MBD3 (ENSOARG00020018029) #24	MEX3D (ENSOARG00020017996) #25	ADAMTSL5 (ENSOARG00020017613) #27	REEP6 (ENSOARG00020017523) #28	PCSK4 (ENSOARG00020016665) #29	C19orf25 (ENSOARG00020016595) #30	APC2 (ENSOARG00020016161) #31	ENSOARG00020016079 #32	DAZAP1 (ENSOARG00020015974) #33	GAMT (ENSOARG00020015902) #34	NDUFS7 (ENSOARG00020015840) #35	PWWP3A (ENSOARG00020015787) #36	EFNA2 (ENSOARG00020015712) #37	FAM174C (ENSOARG00020015682)
Goat	MODERN SPECIES	26	ZCCHC10 (ENSCHIG00000021529)	AFF4 (ENSCHIG00000015153)	LEAP2 (ENSCHIG00000006437)	UQCRQ (ENSCHIG00000017488)	GDF9 (ENSCHIG00000008167)	SHROOM1 (ENSCHIG00000018420)	ENSCHIG00000023876	ENSCHIG00000010758	BTBD2 (ENSCHIG00000025498) #13	CSNK1G2 (ENSCHIG00000012053) #14	SCAMP4 (ENSCHIG00000026658) #15	ABHD17A (ENSCHIG00000017282) #17	KLF16 (ENSCHIG00000010020) #18	REXO1 (ENSCHIG00000021165) #19	ATP8B3 (ENSCHIG00000016005) #20	TCF3 (ENSCHIG00000012431) #22	UQCR11 (ENSCHIG00000008372) #23	MBD3 (ENSCHIG00000024579) #24	MEX3D (ENSCHIG00000012929) #25	ENSCHIG00000023770 #26	ENSCHIG00000017961 #27	ENSCHIG00000010385 #27	REEP6 (ENSCHIG00000025412) #28	PCSK4 (ENSCHIG00000017924) #29	C19orf25 (ENSCHIG00000015419) #30	APC2 (ENSCHIG00000017061) #31	ENSCHIG00000023211 #32	DAZAP1 (ENSCHIG00000024694) #33	GAMT (ENSCHIG00000009917) #34	NDUFS7 (ENSCHIG00000008587) #35	PWWP3A (ENSCHIG00000021735) #36
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.r #20	ENSGT00940000160463.q #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.bb #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.ac #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
American bison	MODERN SPECIES	3121	AFF4 (ENSBBBG00000007509)	LEAP2 (ENSBBBG00000018954)	UQCRQ (ENSBBBG00000004808)	GDF9 (ENSBBBG00000018948)	SHROOM1 (ENSBBBG00000004801)	BTBD2 (ENSBBBG00000004795) #13	CSNK1G2 (ENSBBBG00000018897) #14	SCAMP4 (ENSBBBG00000018882) #15	ADAT3 (ENSBBBG00000018851) #16	ABHD17A (ENSBBBG00000018838) #17	ENSBBBG00000004740 #18	ENSBBBG00000018815	ENSBBBG00000018805 #19	ENSBBBG00000009151 #20	ENSBBBG00000004709 #20	TCF3 (ENSBBBG00000004690) #22	UQCR11 (ENSBBBG00000018581) #23	MBD3 (ENSBBBG00000004588) #24	ENSBBBG00000004581 #26	ADAMTSL5 (ENSBBBG00000004574) #27	REEP6 (ENSBBBG00000018528) #28	PCSK4 (ENSBBBG00000004562) #29	C19orf25 (ENSBBBG00000018509) #30	APC2 (ENSBBBG00000018500) #31	ENSBBBG00000018471 #32	DAZAP1 (ENSBBBG00000004531) #33	GAMT (ENSBBBG00000018451) #34	NDUFS7 (ENSBBBG00000004517) #35	PWWP3A (ENSBBBG00000004507) #36	EFNA2 (ENSBBBG00000018411) #37	FAM174C (ENSBBBG00000008938)
Bos	ANCESTRAL SPECIES	3	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.r #20	ENSGT00940000160463.q #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.bb #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.ac #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Bos_b	ANCESTRAL SPECIES	2	ENSGT00730000111200	ENSGT00950000182974.a.a.b	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.q #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.bb #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.ac #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Cow	MODERN SPECIES	26	HSPA4 (ENSBTAG00000015683)	ZCCHC10 (ENSBTAG00000030616)	AFF4 (ENSBTAG00000009482)	LEAP2 (ENSBTAG00000018926)	UQCRQ (ENSBTAG00000009479)	GDF9 (ENSBTAG00000009478)	SHROOM1 (ENSBTAG00000014676)	BTBD2 (ENSBTAG00000016108) #13	CSNK1G2 (ENSBTAG00000016797) #14	SCAMP4 (ENSBTAG00000045762) #15	ABHD17A (ENSBTAG00000025277) #17	KLF16 (ENSBTAG00000038055) #18	REXO1 (ENSBTAG00000020232) #19	ATP8B3 (ENSBTAG00000020229) #20	ONECUT3 (ENSBTAG00000047578) ##21	TCF3 (ENSBTAG00000008695) #22	UQCR11 (ENSBTAG00000008692) #23	MBD3 (ENSBTAG00000038409) #24	MEX3D (ENSBTAG00000040334) #25	ENSBTAG00000012150 #26	ADAMTSL5 (ENSBTAG00000046263) #27	REEP6 (ENSBTAG00000002311) #28	PCSK4 (ENSBTAG00000002305) #29	C7H19orf25 (ENSBTAG00000051357) #30	APC2 (ENSBTAG00000015433) #31	RPS15 (ENSBTAG00000019718) #32	DAZAP1 (ENSBTAG00000019714) #33	GAMT (ENSBTAG00000004112) #34	NDUFS7 (ENSBTAG00000019419) #35	PWWP3A (ENSBTAG00000030839) #36	EFNA2 (ENSBTAG00000038221) #37
Hybrid Bos Indicus	MODERN SPECIES	26	ZCCHC10 (ENSBIXG00005009861)	AFF4 (ENSBIXG00005009834)	LEAP2 (ENSBIXG00005000606)	UQCRQ (ENSBIXG00005000603)	ENSBIXG00005009763	SHROOM1 (ENSBIXG00005009751)	BTBD2 (ENSBIXG00005006410) #13	CSNK1G2 (ENSBIXG00005009637) #14	SCAMP4 (ENSBIXG00005009612) #15	ADAT3 (ENSBIXG00005009585) #16	ABHD17A (ENSBIXG00005000539) #17	KLF16 (ENSBIXG00005009542) #18	REXO1 (ENSBIXG00005009514) #19	ATP8B3 (ENSBIXG00005009458) #20	ONECUT3 (ENSBIXG00005009373) ##21	TCF3 (ENSBIXG00005009347) #22	UQCR11 (ENSBIXG00005000460) #23	MBD3 (ENSBIXG00005000445) #24	MEX3D (ENSBIXG00005009245) #25	ENSBIXG00005000436 #26	ADAMTSL5 (ENSBIXG00005000429) #27	REEP6 (ENSBIXG00005000422) #28	PCSK4 (ENSBIXG00005009196) #29	C19orf25 (ENSBIXG00005009184) #30	APC2 (ENSBIXG00005009161) #31	RPS15 (ENSBIXG00005009132) #32	DAZAP1 (ENSBIXG00005009054) #33	GAMT (ENSBIXG00005009015) #34	ENSBIXG00005008985 #35	PWWP3A (ENSBIXG00005000323) #36	ENSBIXG00005000319 #37
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.r #20	ENSGT00940000160463.q #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.bb #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475.ac #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Domestic yak	MODERN SPECIES	27	GDF9 (ENSBGRG00000000431)	SHROOM1 (ENSBGRG00000000396)	SOWAHA (ENSBGRG00000018725)	ENSBGRG00000018649 #13	ENSBGRG00000018562 #13	CSNK1G2 (ENSBGRG00000018491) #14	ENSBGRG00000018385 #15	ENSBGRG00000018347	ABHD17A (ENSBGRG00000018270) #17	ENSBGRG00000018212 #18	ENSBGRG00000018133	ENSBGRG00000017850 #19	ENSBGRG00000017775 #20	ENSBGRG00000017718 #20	ONECUT3 (ENSBGRG00000017622) ##21	TCF3 (ENSBGRG00000017293) #22	UQCR11 (ENSBGRG00000017215) #23	MBD3 (ENSBGRG00000016990) #24	MEX3D (ENSBGRG00000016912) #25	ENSBGRG00000016857 #26	ADAMTSL5 (ENSBGRG00000016801) #27	REEP6 (ENSBGRG00000016730) #28	PCSK4 (ENSBGRG00000016652) #29	ENSBGRG00000016616 #30	APC2 (ENSBGRG00000016072) #31	RPS15 (ENSBGRG00000015856) #32	DAZAP1 (ENSBGRG00000015677) #33	GAMT (ENSBGRG00000015533) #34	NDUFS7 (ENSBGRG00000015309) #35	PWWP3A (ENSBGRG00000015207) #36	ENSBGRG00000015098 #37
Wild yak	MODERN SPECIES	321				LEAP2 (ENSBMUG00000002519)	ENSBMUG00000002537	GDF9 (ENSBMUG00000002563)	SHROOM1 (ENSBMUG00000002597)	BTBD2 (ENSBMUG00000002669) #13	CSNK1G2 (ENSBMUG00000002714) #14	SCAMP4 (ENSBMUG00000002748) #15	ABHD17A (ENSBMUG00000002786) #17	ENSBMUG00000002805 #18	ENSBMUG00000002816 #19	ENSBMUG00000002836 #19	ATP8B3 (ENSBMUG00000002908) #20	TCF3 (ENSBMUG00000003152) #22	UQCR11 (ENSBMUG00000003220) #23	MBD3 (ENSBMUG00000003285) #24
Camelidae	ANCESTRAL SPECIES	36	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00390000012911	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT00940000180698	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37	ENSGT00940000153524.a
Arabian camel	MODERN SPECIES	14	JSRP1 (ENSCDRG00005010818)	ENSCDRG00005010886 #9	ENSCDRG00005010908 #9	IZUMO4 (ENSCDRG00005010985) #10	ENSCDRG00005011219	MKNK2 (ENSCDRG00005011258) #12	BTBD2 (ENSCDRG00005011331) #13	CSNK1G2 (ENSCDRG00005011384) #14	SCAMP4 (ENSCDRG00005011441) #15	ADAT3 (ENSCDRG00005011651) #16	ENSCDRG00005011681 #17	ENSCDRG00005011721 #18	ENSCDRG00005009175 #20	ENSCDRG00005009229 #20	ONECUT3 (ENSCDRG00005009294) ##21	TCF3 (ENSCDRG00005009370) #22	UQCR11 (ENSCDRG00005009563) #23	MBD3 (ENSCDRG00005009596) #24	PLK5 (ENSCDRG00005010335) #26	ADAMTSL5 (ENSCDRG00005010436) #27	REEP6 (ENSCDRG00005010646) #28	PCSK4 (ENSCDRG00005010737) #29	C19orf25 (ENSCDRG00005011088) #30	APC2 (ENSCDRG00005011138) #31	ENSCDRG00005011488 #32	ENSCDRG00005011748 #33	GAMT (ENSCDRG00005011779) #34	NDUFS7 (ENSCDRG00005011846) #35	PWWP3A (ENSCDRG00005011921) #36	EFNA2 (ENSCDRG00005012098) #37	ENSCDRG00005012160
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000012911	ENSGT00390000006337	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Felidae	ANCESTRAL SPECIES	21	ENSGT00390000012911	ENSGT00390000006337	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Panthera	ANCESTRAL SPECIES	15	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Panthera_a	ANCESTRAL SPECIES	41	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
leopard	MODERN SPECIES	160	SF3A2 (ENSPPRG00000007798)	PLEKHJ1 (ENSPPRG00000007711) #7	DOT1L (ENSPPRG00000007334) #8	AP3D1 (ENSPPRG00000006942) #9	IZUMO4 (ENSPPRG00000005640) #10	MOB3A (ENSPPRG00000004839) #11	ENSPPRG00000004730 #12	ENSPPRG00000004193 #12	ENSPPRG00000004148 #13	SCAMP4 (ENSPPRG00000003391) #15	ABHD17A (ENSPPRG00000002596) #17	ENSPPRG00000002397 #18	REXO1 (ENSPPRG00000001819) #19	ATP8B3 (ENSPPRG00000001146) #20	ONECUT3 (ENSPPRG00000023224) ##21	TCF3 (ENSPPRG00000023512) #22	UQCR11 (ENSPPRG00000023799) #23	MBD3 (ENSPPRG00000023894) #24	MEX3D (ENSPPRG00000024256) #25	PLK5 (ENSPPRG00000024463) #26	ADAMTSL5 (ENSPPRG00000020291) #27	REEP6 (ENSPPRG00000019745) #28	C19orf25 (ENSPPRG00000017306) #30	APC2 (ENSPPRG00000014741) #31	ENSPPRG00000013868 #32	DAZAP1 (ENSPPRG00000012584) #33	GAMT (ENSPPRG00000010816) #34	NDUFS7 (ENSPPRG00000010776) #35	PWWP3A (ENSPPRG00000010398) #36	EFNA2 (ENSPPRG00000009178) #37	FAM174C (ENSPPRG00000009094)
lion	MODERN SPECIES	2	SF3A2 (ENSPLOG00000005300)	PLEKHJ1 (ENSPLOG00000005236) #7	DOT1L (ENSPLOG00000005203) #8	AP3D1 (ENSPLOG00000005164) #9	IZUMO4 (ENSPLOG00000005008) #10	MOB3A (ENSPLOG00000004961) #11	MKNK2 (ENSPLOG00000004931) #12	CSNK1G2 (ENSPLOG00000004910) #14	SCAMP4 (ENSPLOG00000004893) #15	ADAT3 (ENSPLOG00000004891) #16	ABHD17A (ENSPLOG00000004876) #17	ENSPLOG00000004863 #18	ENSPLOG00000004852	ENSPLOG00000004835 #19	ATP8B3 (ENSPLOG00000004775) #20	TCF3 (ENSPLOG00000004719) #22	UQCR11 (ENSPLOG00000004693) #23	MBD3 (ENSPLOG00000004686) #24	MEX3D (ENSPLOG00000004682) #25	PLK5 (ENSPLOG00000004671) #26	ADAMTSL5 (ENSPLOG00000004655) #27	REEP6 (ENSPLOG00000004645) #28	PCSK4 (ENSPLOG00000004631) #29	C19orf25 (ENSPLOG00000004623) #30	APC2 (ENSPLOG00000004610) #31	ENSPLOG00000004578 #32	DAZAP1 (ENSPLOG00000004550) #33	GAMT (ENSPLOG00000004531) #34	NDUFS7 (ENSPLOG00000004518) #35	PWWP3A (ENSPLOG00000004495) #36	FAM174C (ENSPLOG00000007983)
Cat	MODERN SPECIES	1	PLEKHJ1 (ENSFCAG00000045112) #7	DOT1L (ENSFCAG00000008606) #8	AP3D1 (ENSFCAG00000033810) #9	IZUMO4 (ENSFCAG00000012090) #10	MOB3A (ENSFCAG00000006047) #11	MKNK2 (ENSFCAG00000012087) #12	BTBD2 (ENSFCAG00000031271) #13	CSNK1G2 (ENSFCAG00000027920) #14	SCAMP4 (ENSFCAG00000038494) #15	ABHD17A (ENSFCAG00000002443) #17	KLF16 (ENSFCAG00000046707) #18	ENSFCAG00000047008	ENSFCAG00000035720 #19	ATP8B3 (ENSFCAG00000002436) #20	ONECUT3 (ENSFCAG00000043452) ##21	TCF3 (ENSFCAG00000023514) #22	UQCR11 (ENSFCAG00000002620) #23	MBD3 (ENSFCAG00000000763) #24	MEX3D (ENSFCAG00000043755) #25	ENSFCAG00000001784 #26	ADAMTSL5 (ENSFCAG00000001783) #27	REEP6 (ENSFCAG00000023492) #28	PCSK4 (ENSFCAG00000042231) #29	CA2H19orf25 (ENSFCAG00000001782) #30	APC2 (ENSFCAG00000040625) #31	ENSFCAG00000038889 #32	DAZAP1 (ENSFCAG00000010767) #33	NDUFS7 (ENSFCAG00000032042) #35	GAMT (ENSFCAG00000010765) #34	PWWP3A (ENSFCAG00000009428) #36	EFNA2 (ENSFCAG00000042105) #37
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES		ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.a #22	ENSGT00940000160463.m.b #20	ENSGT00940000157036.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Dingo	MODERN SPECIES	112	AMH (ENSCAFG00020018157)	SF3A2 (ENSCAFG00020018153)	PLEKHJ1 (ENSCAFG00020018140) #7	DOT1L (ENSCAFG00020017984) #8	AP3D1 (ENSCAFG00020017366) #9	IZUMO4 (ENSCAFG00020017320) #10	MOB3A (ENSCAFG00020017318) #11	MKNK2 (ENSCAFG00020017316) #12	BTBD2 (ENSCAFG00020017301) #13	CSNK1G2 (ENSCAFG00020017292) #14	ENSCAFG00020017287 #15	ABHD17A (ENSCAFG00020017284) #17	KLF16 (ENSCAFG00020017282) #18	REXO1 (ENSCAFG00020017276) #19	ENSCAFG00020017270 #20	TCF3 (ENSCAFG00020017249) #22	UQCR11 (ENSCAFG00020017248) #23	MBD3 (ENSCAFG00020017247) #24	MEX3D (ENSCAFG00020017245) #25	ENSCAFG00020017233 #26	ADAMTSL5 (ENSCAFG00020017226) #27	ENSCAFG00020017223 #28	PCSK4 (ENSCAFG00020017206) #29	C19orf25 (ENSCAFG00020017204) #30	APC2 (ENSCAFG00020017201) #31	ENSCAFG00020017177 #32	DAZAP1 (ENSCAFG00020017166) #33	GAMT (ENSCAFG00020017160) #34	NDUFS7 (ENSCAFG00020017154) #35	ENSCAFG00020017148 #36	EFNA2 (ENSCAFG00020017145) #37
Dog	MODERN SPECIES	12	SF3A2 (ENSCAFG00845012454)	PLEKHJ1 (ENSCAFG00845012497) #7	DOT1L (ENSCAFG00845012642) #8	AP3D1 (ENSCAFG00845013005) #9	IZUMO4 (ENSCAFG00845013212) #10	MOB3A (ENSCAFG00845013271) #11	MKNK2 (ENSCAFG00845013328) #12	BTBD2 (ENSCAFG00845013407) #13	CSNK1G2 (ENSCAFG00845013481) #14	ENSCAFG00845013591 #15	ABHD17A (ENSCAFG00845013636) #17	ENSCAFG00845013662 #18	REXO1 (ENSCAFG00845013697) #19	ENSCAFG00845013801 #20	ONECUT3 (ENSCAFG00845013993) ##21	TCF3 (ENSCAFG00845014070) #22	UQCR11 (ENSCAFG00845014167) #23	MBD3 (ENSCAFG00845014226) #24	MEX3D (ENSCAFG00845014280) #25	PLK5 (ENSCAFG00845014316) #26	ENSCAFG00845011859 #27	REEP6 (ENSCAFG00845011929) #28	PCSK4 (ENSCAFG00845012009) #29	C20H19orf25 (ENSCAFG00845012299) #30	APC2 (ENSCAFG00845012329) #31	ENSCAFG00845012383 #32	DAZAP1 (ENSCAFG00845012456) #33	GAMT (ENSCAFG00845012536) #34	NDUFS7 (ENSCAFG00845012618) #35	PWWP3A (ENSCAFG00845012692) #36	EFNA2 (ENSCAFG00845012831) #37
Red fox	MODERN SPECIES	488																ENSVVUG00000003022 #22
Canidae	ANCESTRAL SPECIES		ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036.a #22	ENSGT00940000160463.m.b #20	ENSGT00940000157036.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Red fox	MODERN SPECIES	163	PLEKHJ1 (ENSVVUG00000002554) #7	DOT1L (ENSVVUG00000002530) #8	AP3D1 (ENSVVUG00000002492) #9	IZUMO4 (ENSVVUG00000002473) #10	MOB3A (ENSVVUG00000002458) #11	MKNK2 (ENSVVUG00000002443) #12	ENSVVUG00000002430 #13	CSNK1G2 (ENSVVUG00000002295) #14	SCAMP4 (ENSVVUG00000002257) #15	ADAT3 (ENSVVUG00000002254) #16	ABHD17A (ENSVVUG00000002249) #17	ENSVVUG00000002241 #18	REXO1 (ENSVVUG00000001385) #19	ENSVVUG00000023553 #20	ENSVVUG00000023546 #20	ENSVVUG00000022985 #22	UQCR11 (ENSVVUG00000022949) #23	MBD3 (ENSVVUG00000022947) #24	ENSVVUG00000022924 #26	ADAMTSL5 (ENSVVUG00000022913) #27	REEP6 (ENSVVUG00000022911) #28	PCSK4 (ENSVVUG00000022904) #29	ENSVVUG00000022901	APC2 (ENSVVUG00000022884) #31	ENSVVUG00000022875 #32	DAZAP1 (ENSVVUG00000022865) #33	GAMT (ENSVVUG00000022859) #34	ENSVVUG00000022856 #35	PWWP3A (ENSVVUG00000022851) #36	EFNA2 (ENSVVUG00000022847) #37	FAM174C (ENSVVUG00000022846)
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493.n #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00530000064649	ENSGT00940000153524.a
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493.n #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000153524.a	ENSGT00510000049027.c	ENSGT00390000017576
American mink	MODERN SPECIES	175	AMH (ENSNVIG00000005195)	SF3A2 (ENSNVIG00000005193)	ENSNVIG00000005138 #7	DOT1L (ENSNVIG00000005125) #8	AP3D1 (ENSNVIG00000005089) #9	IZUMO4 (ENSNVIG00000005013) #10	ENSNVIG00000005005 #11	MKNK2 (ENSNVIG00000004977) #12	ENSNVIG00000004964	CSNK1G2 (ENSNVIG00000004949) #14	SCAMP4 (ENSNVIG00000004947) #15	ABHD17A (ENSNVIG00000004930) #17	ENSNVIG00000004925 #18	REXO1 (ENSNVIG00000004894) #19	ATP8B3 (ENSNVIG00000004776) #20	TCF3 (ENSNVIG00000004526) #22	UQCR11 (ENSNVIG00000004502) #23	MBD3 (ENSNVIG00000004491) #24	PLK5 (ENSNVIG00000004473) #26	ADAMTSL5 (ENSNVIG00000004460) #27	ENSNVIG00000004400 #28	C19orf25 (ENSNVIG00000004386) #30	PCSK4 (ENSNVIG00000004231) #29	APC2 (ENSNVIG00000004214) #31	DAZAP1 (ENSNVIG00000004159) #33	GAMT (ENSNVIG00000004135) #34	NDUFS7 (ENSNVIG00000004129) #35	PWWP3A (ENSNVIG00000004076) #36	ENSNVIG00000004065	MIDN (ENSNVIG00000004052)	ATP5F1D (ENSNVIG00000004033)
Ferret	MODERN SPECIES	427	DOT1L (ENSMPUG00000006962) #8	ENSMPUG00000006983	AP3D1 (ENSMPUG00000006989) #9	IZUMO4 (ENSMPUG00000007007) #10	MOB3A (ENSMPUG00000007042) #11	MKNK2 (ENSMPUG00000007049) #12	ENSMPUG00000007157 #13	CSNK1G2 (ENSMPUG00000007278) #14	ENSMPUG00000019982	SCAMP4 (ENSMPUG00000007438) #15	ADAT3 (ENSMPUG00000019983) #16	ABHD17A (ENSMPUG00000007482) #17	ENSMPUG00000007504	REXO1 (ENSMPUG00000007507) #19	ATP8B3 (ENSMPUG00000007522) #20	TCF3 (ENSMPUG00000008024) #22	ENSMPUG00000019985	ENSMPUG00000008040	MBD3 (ENSMPUG00000008045) #24	ENSMPUG00000008059	ENSMPUG00000008064 #26	ADAMTSL5 (ENSMPUG00000008077) #27	REEP6 (ENSMPUG00000008119) #28	PCSK4 (ENSMPUG00000008172) #29	C19orf25 (ENSMPUG00000008182) #30	APC2 (ENSMPUG00000008189) #31	DAZAP1 (ENSMPUG00000008203) #33	GAMT (ENSMPUG00000008211) #34	NDUFS7 (ENSMPUG00000008260) #35	PWWP3A (ENSMPUG00000008330) #36	ENSMPUG00000008455
Ursidae	ANCESTRAL SPECIES	20	ENSGT00960000190456	ENSGT01040000242195	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00950000185514	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00390000010706 #16	ENSGT00940000162150 #15	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493.n #28	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565.d #35	ENSGT00390000001700.a.a #36	ENSGT00530000064649	ENSGT00940000153524.a	ENSGT00510000049027.c
Ursus	ANCESTRAL SPECIES	16	ENSGT00390000012911	ENSGT00720000108823	ENSGT00960000190456	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00950000185514	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000155854 #17	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493.n #28	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000164065.b	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00390000000217	ENSGT00940000153259.a.b	ENSGT00940000160405.b	ENSGT00940000155238
American black bear	MODERN SPECIES	195																TCF3 (ENSUAMG00000014722) #22	UQCR11 (ENSUAMG00000014717) #23	MBD3 (ENSUAMG00000014715) #24
Polar bear	MODERN SPECIES	455	GADD45B (ENSUMAG00000006840)	ENSUMAG00000006827	ENSUMAG00000006808	SPPL2B (ENSUMAG00000006607)	LSM7 (ENSUMAG00000006556)	SF3A2 (ENSUMAG00000006547)	AP3D1 (ENSUMAG00000006248) #9	ENSUMAG00000006190	MOB3A (ENSUMAG00000006173) #11	MKNK2 (ENSUMAG00000006047) #12	SCAMP4 (ENSUMAG00000006028) #15	ABHD17A (ENSUMAG00000006008) #17	ENSUMAG00000005999	ENSUMAG00000005985 #19	ENSUMAG00000005937 #20	TCF3 (ENSUMAG00000005911) #22	ENSUMAG00000005903	MBD3 (ENSUMAG00000005895) #24	ENSUMAG00000005885 #27	ENSUMAG00000005882	C19orf25 (ENSUMAG00000005875) #30	DAZAP1 (ENSUMAG00000005845) #33	GAMT (ENSUMAG00000005814) #34	ENSUMAG00000005808 #35	ENSUMAG00000005803 #36	ENSUMAG00000005800 #36	ENSUMAG00000005798	CIRBP (ENSUMAG00000005794)	ATP5F1D (ENSUMAG00000005780)	STK11 (ENSUMAG00000005728)	SBNO2 (ENSUMAG00000005695)
Giant Panda	MODERN SPECIES	14	ENSAMEG00000030008	AMH (ENSAMEG00000005474)	SF3A2 (ENSAMEG00000005469)	ENSAMEG00000031083	DOT1L (ENSAMEG00000005436) #8	IZUMO4 (ENSAMEG00000005317) #10	AP3D1 (ENSAMEG00000005331) #9	MKNK2 (ENSAMEG00000005272) #12	ENSAMEG00000029694 #13	CSNK1G2 (ENSAMEG00000005228) #14	ADAT3 (ENSAMEG00000005218) #16	ABHD17A (ENSAMEG00000005209) #17	ENSAMEG00000025986 #18	REXO1 (ENSAMEG00000005178) #19	ATP8B3 (ENSAMEG00000005122) #20	TCF3 (ENSAMEG00000003503) #22	UQCR11 (ENSAMEG00000003502) #23	MBD3 (ENSAMEG00000003491) #24	PLK5 (ENSAMEG00000026228) #26	ADAMTSL5 (ENSAMEG00000003454) #27	REEP6 (ENSAMEG00000003018) #28	C19orf25 (ENSAMEG00000003409) #30	APC2 (ENSAMEG00000024057) #31	RPS15 (ENSAMEG00000026624) #32	DAZAP1 (ENSAMEG00000003364) #33	GAMT (ENSAMEG00000003350) #34	NDUFS7 (ENSAMEG00000003326) #35	PWWP3A (ENSAMEG00000003299) #36	CIRBP (ENSAMEG00000003278)	MIDN (ENSAMEG00000029090)	ATP5F1D (ENSAMEG00000003263)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Equus	ANCESTRAL SPECIES	34	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000160463.n #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00940000160040.B #37
Horse	MODERN SPECIES	28	ENSECAG00000054366 #7	DOT1L (ENSECAG00000013711) #8	AP3D1 (ENSECAG00000014724) #9	IZUMO4 (ENSECAG00000009516) #10	MOB3A (ENSECAG00000007444) #11	MKNK2 (ENSECAG00000025008) #12	BTBD2 (ENSECAG00000020996) #13	CSNK1G2 (ENSECAG00000014371) #14	SCAMP4 (ENSECAG00000008326) #15	ADAT3 (ENSECAG00000054522) #16	ABHD17A (ENSECAG00000038761) #17	KLF16 (ENSECAG00000034102) #18	REXO1 (ENSECAG00000012976) #19	ATP8B3 (ENSECAG00000022680) #20	ONECUT3 (ENSECAG00000037649) ##21	TCF3 (ENSECAG00000000623) #22	ENSECAG00000029020	MEX3D (ENSECAG00000030546) #25	ENSECAG00000045516	ENSECAG00000011955 #26	ADAMTSL5 (ENSECAG00000009642) #27	REEP6 (ENSECAG00000033446) #28	PCSK4 (ENSECAG00000036064) #29	APC2 (ENSECAG00000032416) #31	RPS15 (ENSECAG00000040878) #32	DAZAP1 (ENSECAG00000011805) #33	GAMT (ENSECAG00000009689) #34	NDUFS7 (ENSECAG00000000402) #35	PWWP3A (ENSECAG00000022936) #36	EFNA2 (ENSECAG00000036611) #37	FAM174C (ENSECAG00000039910)
Donkey	MODERN SPECIES	12	DOT1L (ENSEASG00005021961) #8	AP3D1 (ENSEASG00005021906) #9	IZUMO4 (ENSEASG00005021873) #10	MOB3A (ENSEASG00005021870) #11	MKNK2 (ENSEASG00005021865) #12	BTBD2 (ENSEASG00005021861) #13	CSNK1G2 (ENSEASG00005030231) #14	SCAMP4 (ENSEASG00005021857) #15	ADAT3 (ENSEASG00005023754) #16	ABHD17A (ENSEASG00005021853) #17	KLF16 (ENSEASG00005029124) #18	ENSEASG00005029806	ENSEASG00005035652 #19	ATP8B3 (ENSEASG00005021801) #20	ONECUT3 (ENSEASG00005037648) ##21	TCF3 (ENSEASG00005023833) #22	UQCR11 (ENSEASG00005021754) #23	ENSEASG00005031649	MBD3 (ENSEASG00005021748) #24	MEX3D (ENSEASG00005033167) #25	ENSEASG00005021738 #26	ENSEASG00005021735 #27	ENSEASG00005021732 #28	PCSK4 (ENSEASG00005028118) #29	C19orf25 (ENSEASG00005033060) #30	APC2 (ENSEASG00005031862) #31	ENSEASG00005035902	ENSEASG00005034668 #32	DAZAP1 (ENSEASG00005021718) #33	GAMT (ENSEASG00005021717) #34	NDUFS7 (ENSEASG00005021708) #35
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.m.a #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.m.a #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00940000161493 #28	ENSGT00940000161989 #29	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00940000156757 #33	ENSGT00390000000475 #32	ENSGT00940000158050	ENSGT00390000009230	ENSGT00390000017576	ENSGT00510000049027.c
Greater horseshoe bat	MODERN SPECIES	9	SF3A2 (ENSRFEG00010009670)	PLEKHJ1 (ENSRFEG00010009727) #7	DOT1L (ENSRFEG00010009913) #8	AP3D1 (ENSRFEG00010009987) #9	IZUMO4 (ENSRFEG00010010079) #10	MOB3A (ENSRFEG00010010154) #11	MKNK2 (ENSRFEG00010010204) #12	BTBD2 (ENSRFEG00010010280) #13	CSNK1G2 (ENSRFEG00010010373) #14	SCAMP4 (ENSRFEG00010010459) #15	ABHD17A (ENSRFEG00010010571) #17	KLF16 (ENSRFEG00010010682) #18	REXO1 (ENSRFEG00010010744) #19	ATP8B3 (ENSRFEG00010010956) #20	ONECUT3 (ENSRFEG00010011366) ##21	TCF3 (ENSRFEG00010011422) #22	UQCR11 (ENSRFEG00010011530) #23	MBD3 (ENSRFEG00010011620) #24	MEX3D (ENSRFEG00010011693) #25	ENSRFEG00010011755	PLK5 (ENSRFEG00010011783) #26	ADAMTSL5 (ENSRFEG00010012057) #27	REEP6 (ENSRFEG00010012076) #28	PCSK4 (ENSRFEG00010012138) #29	C19orf25 (ENSRFEG00010012169) #30	APC2 (ENSRFEG00010012212) #31	DAZAP1 (ENSRFEG00010012277) #33	RPS15 (ENSRFEG00010012434) #32	STK11 (ENSRFEG00010012568)	CBARP (ENSRFEG00010012839)	ENSRFEG00010012895
Microbat	MODERN SPECIES	1320																TCF3 (ENSMLUG00000011221) #22	ENSMLUG00000006169 #23	MBD3 (ENSMLUG00000016725) #24	MEX3D (ENSMLUG00000017018) #25	ENSMLUG00000003768 #26	ADAMTSL5 (ENSMLUG00000003755) #27	REEP6 (ENSMLUG00000003752) #28	PCSK4 (ENSMLUG00000003738) #29	C19orf25 (ENSMLUG00000003735) #30	APC2 (ENSMLUG00000003726) #31	DAZAP1 (ENSMLUG00000014975) #33	STK11 (ENSMLUG00000014986)	CBARP (ENSMLUG00000014991)	ATP5F1D (ENSMLUG00000015004)	ENSMLUG00000023248	CIRBP (ENSMLUG00000015007)
Megabat	MODERN SPECIES	2421																TCF3 (ENSPVAG00000014587) #22
Atlantogenata	ANCESTRAL SPECIES	75								ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00470000042565	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000018061 #34	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00530000064649	ENSGT00940000153524.a
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000157036 #22
Armadillo	MODERN SPECIES	1180																ENSDNOG00000042880 #22
Afrotheria	ANCESTRAL SPECIES	90								ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00470000042565	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00530000064649	ENSGT00940000153524.a	ENSGT00510000049027.c	ENSGT00390000017576
Tenrec	MODERN SPECIES	6045																TCF3 (ENSETEG00000015388) #22
Afrotheria_a	ANCESTRAL SPECIES	91								ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00390000010706 #16	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.d #24	ENSGT00940000162321 #26	ENSGT00940000160456 #27	ENSGT00470000042565	ENSGT00390000007991 #30	ENSGT00530000063749.c.a #31	ENSGT00390000000475 #32	ENSGT00940000156757 #33	ENSGT00390000006565 #35	ENSGT00390000001700.a.a #36	ENSGT00530000064649	ENSGT00940000153524.a	ENSGT00510000049027.c	ENSGT00390000017576
Elephant	MODERN SPECIES	115															ENSLAFG00000030572 #20	TCF3 (ENSLAFG00000026277) #22	UQCR11 (ENSLAFG00000005758) #23	MBD3 (ENSLAFG00000005756) #24	ENSLAFG00000027173 #26	ENSLAFG00000026414 #27	ENSLAFG00000022208 #27	C19orf25 (ENSLAFG00000027904) #30	APC2 (ENSLAFG00000006602) #31	ENSLAFG00000008738 #32	DAZAP1 (ENSLAFG00000018103) #33	ENSLAFG00000028915	ENSLAFG00000032671	NDUFS7 (ENSLAFG00000027030) #35	PWWP3A (ENSLAFG00000013451) #36	FAM174C (ENSLAFG00000005697)	ENSLAFG00000032156
Hyrax	MODERN SPECIES	5865																TCF3 (ENSPCAG00000000152) #22
Marsupialia	ANCESTRAL SPECIES	25	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854.d #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926
Marsupialia_b	ANCESTRAL SPECIES	24	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854.d #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926
Diprotodontia	ANCESTRAL SPECIES	54											ENSGT00940000155854.d #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926
Diprotodontia_a	ANCESTRAL SPECIES	53											ENSGT00940000155854.d #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926
Common wonbat	MODERN SPECIES	626	PLEKHJ1 (ENSVURG00010015697) #7	DOT1L (ENSVURG00010015667) #8	AP3D1 (ENSVURG00010015641) #9	MOB3A (ENSVURG00010015634) #11	MKNK2 (ENSVURG00010015612) #12	BTBD2 (ENSVURG00010015605) #13	ENSVURG00010015600 #14	SCAMP4 (ENSVURG00010015592) #15	ENSVURG00010015582	ENSVURG00010015577	ABHD17A (ENSVURG00010015569) #17	KLF16 (ENSVURG00010015560) #18	REXO1 (ENSVURG00010015541) #19	ATP8B3 (ENSVURG00010015529) #20	ONECUT3 (ENSVURG00010015518) ##21	TCF3 (ENSVURG00010015477) #22	ENSVURG00010015467 #23	ENSVURG00010015463 ##24	MEX3D (ENSVURG00010015379) #25	ENSVURG00010015363	MEF2B (ENSVURG00010015357)	TMEM161A (ENSVURG00010015346)	SLC25A42 (ENSVURG00010015339)	ARMC6 (ENSVURG00010015325)	SUGP2 (ENSVURG00010015311)	HOMER3 (ENSVURG00010015278)	DDX49 (ENSVURG00010015248)	COPE (ENSVURG00010015238)	CERS1 (ENSVURG00010015235)	ENSVURG00010015230	UPF1 (ENSVURG00010015221)
koala	MODERN SPECIES	133	PLEKHJ1 (ENSPCIG00000030461) #7	DOT1L (ENSPCIG00000030462) #8	AP3D1 (ENSPCIG00000030490) #9	MOB3A (ENSPCIG00000001533) #11	MKNK2 (ENSPCIG00000013141) #12	BTBD2 (ENSPCIG00000035693) #13	CSNK1G2 (ENSPCIG00000030508) #14	SCAMP4 (ENSPCIG00000030510) #15	ENSPCIG00000030514	ENSPCIG00000031601	ENSPCIG00000021249 #17	KLF16 (ENSPCIG00000005422) #18	REXO1 (ENSPCIG00000013942) #19	ATP8B3 (ENSPCIG00000000575) #20	ONECUT3 (ENSPCIG00000000607) ##21	TCF3 (ENSPCIG00000000701) #22	ENSPCIG00000000759	ENSPCIG00000000769	ENSPCIG00000000783 ##24	MEX3D (ENSPCIG00000000826) #25	ENSPCIG00000000833	MEF2B (ENSPCIG00000000841)	TMEM161A (ENSPCIG00000000862)	SLC25A42 (ENSPCIG00000033976)	ARMC6 (ENSPCIG00000000957)	SUGP2 (ENSPCIG00000000974)	ENSPCIG00000000990	HOMER3 (ENSPCIG00000001019)	DDX49 (ENSPCIG00000001050)	COPE (ENSPCIG00000001137)	CERS1 (ENSPCIG00000006153)
Wallaby	MODERN SPECIES	8369																TCF3 (ENSMEUG00000014058) #22
Tasmanian devil	MODERN SPECIES		DOT1L (ENSSHAG00000010977) #8	AP3D1 (ENSSHAG00000009537) #9	ENSSHAG00000026403	MOB3A (ENSSHAG00000008911) #11	MKNK2 (ENSSHAG00000028602) #12	BTBD2 (ENSSHAG00000020860) #13	CSNK1G2 (ENSSHAG00000006727) #14	SCAMP4 (ENSSHAG00000028703) #15	ENSSHAG00000024353	ENSSHAG00000031510	ABHD17A (ENSSHAG00000025789) #17	KLF16 (ENSSHAG00000028587) #18	REXO1 (ENSSHAG00000026227) #19	ENSSHAG00000014873 #20	ONECUT3 (ENSSHAG00000031650) ##21	TCF3 (ENSSHAG00000013735) #22	ENSSHAG00000013346 ##24	ENSSHAG00000024607 #25	ENSSHAG00000030655	ENSSHAG00000012631	TMEM161A (ENSSHAG00000012380)	SLC25A42 (ENSSHAG00000021004)	SUGP2 (ENSSHAG00000011705)	ARMC6 (ENSSHAG00000011840)	ENSSHAG00000011270	HOMER3 (ENSSHAG00000011091)	DDX49 (ENSSHAG00000010982)	COPE (ENSSHAG00000010821)	ENSSHAG00000030192	CERS1 (ENSSHAG00000010705)	UPF1 (ENSSHAG00000010499)
Opossum	MODERN SPECIES	2	PLEKHJ1 (ENSMODG00000004671) #7	DOT1L (ENSMODG00000004662) #8	AP3D1 (ENSMODG00000004631) #9	MOB3A (ENSMODG00000004569) #11	MKNK2 (ENSMODG00000004561) #12	BTBD2 (ENSMODG00000004538) #13	CSNK1G2 (ENSMODG00000004527) #14	SCAMP4 (ENSMODG00000043612) #15	ENSMODG00000004462	ENSMODG00000004426	ENSMODG00000004421 #17	ENSMODG00000038677 #18	REXO1 (ENSMODG00000004395) #19	ATP8B3 (ENSMODG00000004209) #20	ONECUT3 (ENSMODG00000004149) ##21	TCF3 (ENSMODG00000004143) #22	UQCR11 (ENSMODG00000004132) #23	ENSMODG00000004125 ##24	MEX3D (ENSMODG00000004116) #25	MEF2B (ENSMODG00000004105)	TMEM161A (ENSMODG00000004083)	SLC25A42 (ENSMODG00000045593)	ARMC6 (ENSMODG00000004028)	SUGP2 (ENSMODG00000003992)	ENSMODG00000043314	HOMER3 (ENSMODG00000003771)	DDX49 (ENSMODG00000003745)	COPE (ENSMODG00000003729)	CERS1 (ENSMODG00000023939)	GDF1 (ENSMODG00000049198)	UPF1 (ENSMODG00000003689)
Platypus	MODERN SPECIES	85	CLEC3A (ENSOANG00000045685)	MAF (ENSOANG00000004812)	ENSOANG00000004813	ENSOANG00000046017	ENSOANG00000050850	SCAMP4 (ENSOANG00000042246) #15	CSNK1G2 (ENSOANG00000009333) #14	BTBD2 (ENSOANG00000041316) #13	ENSOANG00000042189	ENSOANG00000039838	ABHD17A (ENSOANG00000036622) #17	ENSOANG00000042009	REXO1 (ENSOANG00000036110) #19	ENSOANG00000014921 #20	ONECUT3 (ENSOANG00000004576) ##21	TCF3 (ENSOANG00000014335) #22	UQCR11 (ENSOANG00000003834) #23	ENSOANG00000003672 ##24	MEX3D (ENSOANG00000011764) #25	ENSOANG00000037185	ENSOANG00000046986	NFIC (ENSOANG00000042636)	ENSOANG00000043849	DOHH (ENSOANG00000041341)	FZR1 (ENSOANG00000007656)	ENSOANG00000015682	ENSOANG00000014325	HMG20B (ENSOANG00000013515)	TBXA2R (ENSOANG00000037569)	PIP5K1C (ENSOANG00000006295)	TJP3 (ENSOANG00000006294)
Sauria	ANCESTRAL SPECIES	20	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Archosauria	ANCESTRAL SPECIES	16	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Aves	ANCESTRAL SPECIES	20	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Neognathae	ANCESTRAL SPECIES	21	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01010000224514	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Passeriformes	ANCESTRAL SPECIES	27	ENSGT00720000108823.a.a	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01010000224514	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Passeriformes_d	ANCESTRAL SPECIES	28	ENSGT00720000108823.a.a	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01010000224514	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Passeriformes_g	ANCESTRAL SPECIES	29	ENSGT00720000108823.b	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT01100000264330	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01010000224514	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Passeroidea	ANCESTRAL SPECIES	29	ENSGT00720000108823.b	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT01100000264330	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01010000224514	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Zebra finch	MODERN SPECIES	21	SF3A2 (ENSTGUG00000000305)	PLEKHJ1 (ENSTGUG00000021961) #7	DOT1L (ENSTGUG00000000295) #8	AP3D1 (ENSTGUG00000000284) #9	MOB3A (ENSTGUG00000000281) #11	MKNK2 (ENSTGUG00000000278) #12	BTBD2 (ENSTGUG00000000274) #13	CSNK1G2 (ENSTGUG00000014183) #14	SCAMP4 (ENSTGUG00000027166) #15	ENSTGUG00000000264	ABHD17A (ENSTGUG00000029122) #17	REXO1 (ENSTGUG00000000250) #19	ATP8B3 (ENSTGUG00000000215) #20	ONECUT3 (ENSTGUG00000000213) ##21	ENSTGUG00000024129	TCF3 (ENSTGUG00000000208) #22	ENSTGUG00000028830	ENSTGUG00000027738	ENSTGUG00000000202 ##24	MEX3D (ENSTGUG00000000201) #25	ENSTGUG00000000189	NFIC (ENSTGUG00000000182)	FZR1 (ENSTGUG00000000181)	DOHH (ENSTGUG00000022298)	ENSTGUG00000021145	ENSTGUG00000023440	MFSD12 (ENSTGUG00000000177)	HMG20B (ENSTGUG00000000169)	ENSTGUG00000000168	TBXA2R (ENSTGUG00000000167)	ENSTGUG00000000163
Common canary	MODERN SPECIES	44	OAZ1 (ENSSCAG00000002364)	SF3A2 (ENSSCAG00000002348)	PLEKHJ1 (ENSSCAG00000002343) #7	DOT1L (ENSSCAG00000002326) #8	AP3D1 (ENSSCAG00000002302) #9	MOB3A (ENSSCAG00000002296) #11	MKNK2 (ENSSCAG00000002284) #12	BTBD2 (ENSSCAG00000002272) #13	CSNK1G2 (ENSSCAG00000002257) #14	SCAMP4 (ENSSCAG00000002247) #15	ENSSCAG00000002241	ENSSCAG00000002237	ENSSCAG00000002235	ABHD17A (ENSSCAG00000002228) #17	REXO1 (ENSSCAG00000002218) #19	TCF3 (ENSSCAG00000002157) #22	ENSSCAG00000002149	ENSSCAG00000002147 ##24	MEX3D (ENSSCAG00000002143) #25	UNC13A (ENSSCAG00000001566)	NFIC (ENSSCAG00000001320)	ENSSCAG00000001314	DOHH (ENSSCAG00000001308)	ENSSCAG00000001302	FZR1 (ENSSCAG00000001289)	ENSSCAG00000001281	MFSD12 (ENSSCAG00000001269)	HMG20B (ENSSCAG00000001244)	ENSSCAG00000001232	TBXA2R (ENSSCAG00000001225)	ENSSCAG00000001185
Medium ground finch	MODERN SPECIES	144	AMH (ENSGFOG00000011380)	SF3A2 (ENSGFOG00000011388)	PLEKHJ1 (ENSGFOG00000011393) #7	DOT1L (ENSGFOG00000011399) #8	AP3D1 (ENSGFOG00000011448) #9	MOB3A (ENSGFOG00000011581) #11	MKNK2 (ENSGFOG00000011586) #12	BTBD2 (ENSGFOG00000011590) #13	CSNK1G2 (ENSGFOG00000011595) #14	SCAMP4 (ENSGFOG00000011599) #15	ENSGFOG00000011608	ENSGFOG00000011616	ABHD17A (ENSGFOG00000011621) #17	REXO1 (ENSGFOG00000011627) #19	ATP8B3 (ENSGFOG00000011643) #20	TCF3 (ENSGFOG00000011869) #22	ENSGFOG00000011894	ENSGFOG00000011901 ##24	ENSGFOG00000011913	NFIC (ENSGFOG00000011961)	DOHH (ENSGFOG00000011973)	ENSGFOG00000011976	FZR1 (ENSGFOG00000011979)	MFSD12 (ENSGFOG00000011989)	HMG20B (ENSGFOG00000011992)	GIPC3 (ENSGFOG00000011999)	TBXA2R (ENSGFOG00000012003)	ENSGFOG00000012009	PIP5K1C (ENSGFOG00000012030)	TJP3 (ENSGFOG00000012394)	APBA3 (ENSGFOG00000012404)
Flycatcher	MODERN SPECIES	20	ENSFALG00000025653	ENSFALG00000013780 #7	DOT1L (ENSFALG00000013775) #8	AP3D1 (ENSFALG00000013760) #9	MOB3A (ENSFALG00000013754) #11	MKNK2 (ENSFALG00000013750) #12	BTBD2 (ENSFALG00000013747) #13	CSNK1G2 (ENSFALG00000013745) #14	SCAMP4 (ENSFALG00000024926) #15	ENSFALG00000013742	ENSFALG00000024952	ABHD17A (ENSFALG00000013738) #17	REXO1 (ENSFALG00000013737) #19	ATP8B3 (ENSFALG00000013734) #20	ONECUT3 (ENSFALG00000011399) ##21	TCF3 (ENSFALG00000011409) #22	UQCR11 (ENSFALG00000011419) #23	ENSFALG00000011424 ##24	MEX3D (ENSFALG00000026265) #25	ENSFALG00000011460	NFIC (ENSFALG00000011533)	ENSFALG00000022936	DOHH (ENSFALG00000011564)	ENSFALG00000011571	FZR1 (ENSFALG00000024069)	ENSFALG00000011585	MFSD12 (ENSFALG00000011597)	HMG20B (ENSFALG00000025880)	ENSFALG00000023251	TBXA2R (ENSFALG00000011627)	ENSFALG00000011629
Great tit	MODERN SPECIES	21	ENSPMJG00000010595 #9	ENSPMJG00000010588 #9	MOB3A (ENSPMJG00000010587) #11	MKNK2 (ENSPMJG00000010190) #12	BTBD2 (ENSPMJG00000010186) #13	CSNK1G2 (ENSPMJG00000010185) #14	SCAMP4 (ENSPMJG00000010183) #15	ENSPMJG00000010181	ENSPMJG00000010180	ENSPMJG00000010179	ABHD17A (ENSPMJG00000010178) #17	REXO1 (ENSPMJG00000010174) #19	ENSPMJG00000010168	ENSPMJG00000010161 #20	ONECUT3 (ENSPMJG00000010159) ##21	TCF3 (ENSPMJG00000010156) #22	ENSPMJG00000010155	ENSPMJG00000010147 ##24	MEX3D (ENSPMJG00000010140) #25	ENSPMJG00000004858	NFIC (ENSPMJG00000004825)	DOHH (ENSPMJG00000004816)	ENSPMJG00000004812	FZR1 (ENSPMJG00000004796)	ENSPMJG00000004792	MFSD12 (ENSPMJG00000004783)	HMG20B (ENSPMJG00000004780)	GIPC3 (ENSPMJG00000004693)	TBXA2R (ENSPMJG00000004691)	ENSPMJG00000004684	PIP5K1C (ENSPMJG00000004656)
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000164939	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000155347.b	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01010000224514	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Kakapo	MODERN SPECIES	13	SF3A2 (ENSSHBG00005014304)	PLEKHJ1 (ENSSHBG00005014296) #7	DOT1L (ENSSHBG00005014169) #8	AP3D1 (ENSSHBG00005013969) #9	MOB3A (ENSSHBG00005001083) #11	MKNK2 (ENSSHBG00005001077) #12	BTBD2 (ENSSHBG00005001073) #13	CSNK1G2 (ENSSHBG00005001071) #14	SCAMP4 (ENSSHBG00005001069) #15	ENSSHBG00005001068	ABHD17A (ENSSHBG00005009093) #17	ENSSHBG00005009078	REXO1 (ENSSHBG00005009060) #19	ATP8B3 (ENSSHBG00005008890) #20	ONECUT3 (ENSSHBG00005008818) ##21	TCF3 (ENSSHBG00005008806) #22	UQCR11 (ENSSHBG00005008754) #23	ENSSHBG00005008744 ##24	MEX3D (ENSSHBG00005008736) #25	GADD45B (ENSSHBG00005008726)	DIRAS1 (ENSSHBG00005008709)	SLC39A3 (ENSSHBG00005008700)	SGTA (ENSSHBG00005008687)	THOP1 (ENSSHBG00005008671)	ENSSHBG00005008663 #27	PCSK4 (ENSSHBG00005008646) #29	REEP6 (ENSSHBG00005008629) #28	ENSSHBG00005008614	APC2 (ENSSHBG00005008593) #31	RPS15 (ENSSHBG00005008580) #32	DAZAP1 (ENSSHBG00005008570) #33
Golden eagle	MODERN SPECIES	3	MOB3A (ENSACCG00020016233) #11	ENSACCG00020016236	MKNK2 (ENSACCG00020016246) #12	BTBD2 (ENSACCG00020016258) #13	ENSACCG00020016262	CSNK1G2 (ENSACCG00020016271) #14	SCAMP4 (ENSACCG00020016283) #15	ENSACCG00020016296	ENSACCG00020016302	ENSACCG00020016307	ENSACCG00020016314	ABHD17A (ENSACCG00020016322) #17	REXO1 (ENSACCG00020016333) #19	ATP8B3 (ENSACCG00020016385) #20	ONECUT3 (ENSACCG00020016434) ##21	TCF3 (ENSACCG00020011467) #22	UQCR11 (ENSACCG00020011517) #23	ENSACCG00020011539 ##24	MEX3D (ENSACCG00020011577) #25	ENSACCG00020011648	ENSACCG00020011705	ENSACCG00020011729	ENSACCG00020011918	NFIC (ENSACCG00020012082)	DOHH (ENSACCG00020012109)	ENSACCG00020012129	FZR1 (ENSACCG00020012157)	TEKTIP1 (ENSACCG00020012261)	MFSD12 (ENSACCG00020012306)	HMG20B (ENSACCG00020012330)	ENSACCG00020012353
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000155347.b	ENSGT01030000234573.A.b.b.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Anatidae	ANCESTRAL SPECIES	65	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000155347.b.a
Pink-footed goose	MODERN SPECIES	266	SF3A2 (ENSABRG00000001698)	PLEKHJ1 (ENSABRG00000001737) #7	DOT1L (ENSABRG00000001775) #8	AP3D1 (ENSABRG00000001998) #9	MOB3A (ENSABRG00000002891) #11	MKNK2 (ENSABRG00000002901) #12	BTBD2 (ENSABRG00000002927) #13	CSNK1G2 (ENSABRG00000002942) #14	SCAMP4 (ENSABRG00000002974) #15	ENSABRG00000002992	ENSABRG00000003012	ABHD17A (ENSABRG00000003029) #17	REXO1 (ENSABRG00000003050) #19	ATP8B3 (ENSABRG00000003124) #20	ONECUT3 (ENSABRG00000003327) ##21	TCF3 (ENSABRG00000003373) #22	ENSABRG00000003529	ENSABRG00000003555 ##24	MEX3D (ENSABRG00000003575) #25	ENSABRG00000003602	UNC13A (ENSABRG00000004174)
Duck	MODERN SPECIES	20	OAZ1 (ENSAPLG00000021664)	ENSAPLG00000016512	SF3A2 (ENSAPLG00000030775)	PLEKHJ1 (ENSAPLG00000010955) #7	DOT1L (ENSAPLG00000009414) #8	AP3D1 (ENSAPLG00000009684) #9	BTBD2 (ENSAPLG00000010930) #13	ENSAPLG00000010987 #14	SCAMP4 (ENSAPLG00000011434) #15	ENSAPLG00000011493	ENSAPLG00000026952	ABHD17A (ENSAPLG00000011903) #17	REXO1 (ENSAPLG00000011954) #19	ATP8B3 (ENSAPLG00000012087) #20	PIP5K1C (ENSAPLG00000005085)	TCF3 (ENSAPLG00000001939) #22	UQCR11 (ENSAPLG00000000981) #23	ENSAPLG00000003384 ##24	FZR1 (ENSAPLG00000005845)	ENSAPLG00000005461	ENSAPLG00000026833	ENSAPLG00000017442	MATK (ENSAPLG00000003263)	ENSAPLG00000025013	ELAVL1 (ENSAPLG00000003139)	ENSAPLG00000002793	ENSAPLG00000027829	POLE4 (ENSAPLG00000028021)	ENSAPLG00000011711	ENSAPLG00000017048	ENSAPLG00000011387
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT01030000234573.A.b.b.a	ENSGT00940000154737.c	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153942.a.f	ENSGT00950000182920.b.a.a.d.d.a	ENSGT00950000182920.b.a.a.d.d.b	ENSGT00940000165355	ENSGT00940000159170	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000159261
Japanese quail	MODERN SPECIES	20	SF3A2 (ENSCJPG00005009860)	PLEKHJ1 (ENSCJPG00005009861) #7	DOT1L (ENSCJPG00005009863) #8	AP3D1 (ENSCJPG00005009864) #9	MOB3A (ENSCJPG00005010279) #11	MKNK2 (ENSCJPG00005010280) #12	BTBD2 (ENSCJPG00005010281) #13	CSNK1G2 (ENSCJPG00005010282) #14	SCAMP4 (ENSCJPG00005010283) #15	ENSCJPG00005010284	ENSCJPG00005010285	ABHD17A (ENSCJPG00005010286) #17	REXO1 (ENSCJPG00005010287) #19	ATP8B3 (ENSCJPG00005010293) #20	ONECUT3 (ENSCJPG00005010311) ##21	TCF3 (ENSCJPG00005010314) #22	UQCR11 (ENSCJPG00005010315) #23	ENSCJPG00005010316 ##24	MEX3D (ENSCJPG00005010317) #25	MIER2 (ENSCJPG00005010318)	SH3GL1 (ENSCJPG00005010319)	CHAF1A (ENSCJPG00005010320)	UBXN6 (ENSCJPG00005010321)	HDGFL2 (ENSCJPG00005010322)	ENSCJPG00005010323	ENSCJPG00005010324	ENSCJPG00005010325	SEMA6B (ENSCJPG00005010326)	SIRT6 (ENSCJPG00005010328)	CREB3L3 (ENSCJPG00005010329)	MAP2K2 (ENSCJPG00005010330)
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT01030000234573.A.b.b.a	ENSGT00940000154737.c	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153942.a.f	ENSGT00950000182920.b.a.a.d.d.a	ENSGT00950000182920.b.a.a.d.d.b	ENSGT00940000165355	ENSGT00940000159170	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000159261
Chicken	MODERN SPECIES	20	SF3A2 (ENSGALG00010027884)	PLEKHJ1 (ENSGALG00010027885) #7	DOT1L (ENSGALG00010027893) #8	AP3D1 (ENSGALG00010027897) #9	MOB3A (ENSGALG00010027901) #11	MKNK2 (ENSGALG00010027907) #12	BTBD2 (ENSGALG00010027914) #13	CSNK1G2 (ENSGALG00010027918) #14	SCAMP4 (ENSGALG00010027920) #15	ENSGALG00010027924	ENSGALG00010027927	ABHD17A (ENSGALG00010027931) #17	REXO1 (ENSGALG00010028429) #19	ATP8B3 (ENSGALG00010028435) #20	ONECUT3 (ENSGALG00010028441) ##21	TCF3 (ENSGALG00010027700) #22	UQCR11 (ENSGALG00010027746) #23	MBD3 (ENSGALG00010027801) ##24	MEX3D (ENSGALG00010027811) #25	MIER2 (ENSGALG00010027100)	SH3GL1 (ENSGALG00010027192)	CHAF1A (ENSGALG00010027202)	UBXN6 (ENSGALG00010027208)	HDGFRP2 (ENSGALG00010027211)	PLIN4 (ENSGALG00010027214)	ENSGALG00010028734	ENSGALG00010027216	SEMA6B (ENSGALG00010027217)	ANKRD24 (ENSGALG00010027220)	SIRT6 (ENSGALG00010027223)	CREB3L3 (ENSGALG00010027225)
Turkey	MODERN SPECIES	23	ENSMGAG00000002932	CREB3L3 (ENSMGAG00000002752)	ENSMGAG00000002886	ENSMGAG00000020137	ENSMGAG00000019508	ENSMGAG00000021893	ENSMGAG00000002817	ENSMGAG00000002850	ENSMGAG00000002708	ENSMGAG00000002775	SH3GL1 (ENSMGAG00000002570)	ENSMGAG00000002532	ENSMGAG00000002325 #25	ENSMGAG00000002493 ##24	ENSMGAG00000002489 #23	ENSMGAG00000002388 #22	ENSMGAG00000018914	ENSMGAG00000019234	USHBP1 (ENSMGAG00000019092)	ANKLE1 (ENSMGAG00000021903)	ABHD8 (ENSMGAG00000001860)	DDA1 (ENSMGAG00000003919)	ANO8 (ENSMGAG00000003374)	GTPBP3 (ENSMGAG00000020218)	ENSMGAG00000021153	YJEFN3 (ENSMGAG00000018230)	GATAD2A (ENSMGAG00000004036)	MAU2 (ENSMGAG00000004012)	SUGP1 (ENSMGAG00000003967)	TM6SF2 (ENSMGAG00000003934)	ENSMGAG00000020085
African ostrich	MODERN SPECIES	208	OAZ1 (ENSSCUG00000002805)	AMH (ENSSCUG00000002809)	SF3A2 (ENSSCUG00000002810)	PLEKHJ1 (ENSSCUG00000002811) #7	DOT1L (ENSSCUG00000002813) #8	AP3D1 (ENSSCUG00000002817) #9	MOB3A (ENSSCUG00000002821) #11	BTBD2 (ENSSCUG00000002823) #13	CSNK1G2 (ENSSCUG00000002824) #14	SCAMP4 (ENSSCUG00000002826) #15	ENSSCUG00000002828	ENSSCUG00000002830	ABHD17A (ENSSCUG00000002832) #17	REXO1 (ENSSCUG00000002833) #19	ATP8B3 (ENSSCUG00000002846) #20	TCF3 (ENSSCUG00000002857) #22	UQCR11 (ENSSCUG00000002863) #23
Australian saltwater crocodile	MODERN SPECIES	26	MOB3A (ENSCPRG00005009141) #11	MKNK2 (ENSCPRG00005009133) #12	BTBD2 (ENSCPRG00005009092) #13	CSNK1G2 (ENSCPRG00005009075) #14	SCAMP4 (ENSCPRG00005009068) #15	ENSCPRG00005009063	ENSCPRG00005009061	ABHD17A (ENSCPRG00005009059) #17	KLF16 (ENSCPRG00005009055) #18	ENSCPRG00005009053	REXO1 (ENSCPRG00005009036) #19	ENSCPRG00005009034	ATP8B3 (ENSCPRG00005009010) #20	ONECUT3 (ENSCPRG00005008994) ##21	ENSCPRG00005008986	TCF3 (ENSCPRG00005008946) #22	ENSCPRG00005008936	ENSCPRG00005008927 ##24	MEX3D (ENSCPRG00005008924) #25	ENSCPRG00005008885	ENSCPRG00005008868	MIER2 (ENSCPRG00005008866)	ENSCPRG00005008865	FSD1 (ENSCPRG00005008856)	ENSCPRG00005008853	STAP2 (ENSCPRG00005008852)	MPND (ENSCPRG00005008834)	SH3GL1 (ENSCPRG00005008819)	CHAF1A (ENSCPRG00005008804)	UBXN6 (ENSCPRG00005008794)	ENSCPRG00005008792
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Testudinoidea	ANCESTRAL SPECIES	39	ENSGT00940000159808	ENSGT00730000114280	ENSGT00390000006337	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Testudinidae	ANCESTRAL SPECIES	49	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00960000190793	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299.u.b #23	ENSGT00390000018299.u.a #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
Goode s thornscrub tortoise	MODERN SPECIES	14	ENSGEVG00005011115	ENSGEVG00005011142	MOB3A (ENSGEVG00005011182) #11	MKNK2 (ENSGEVG00005011216) #12	BTBD2 (ENSGEVG00005011547) #13	CSNK1G2 (ENSGEVG00005011586) #14	SCAMP4 (ENSGEVG00005011640) #15	ENSGEVG00005011683	ENSGEVG00005012056	ABHD17A (ENSGEVG00005012082) #17	KLF16 (ENSGEVG00005012101) #18	REXO1 (ENSGEVG00005012141) #19	ENSGEVG00005012261 #20	ENSGEVG00005012366 #20	ONECUT3 (ENSGEVG00005012425) ##21	TCF3 (ENSGEVG00005012471) #22	ENSGEVG00005012591 #23	ENSGEVG00005012619 ##24	MEX3D (ENSGEVG00005012665) #25	ENSGEVG00005012690	ENSGEVG00005013038	NFIC (ENSGEVG00005014577)	ENSGEVG00005014641	DOHH (ENSGEVG00005014695)	ENSGEVG00005014711	FZR1 (ENSGEVG00005014726)	TEKTIP1 (ENSGEVG00005014767)	MFSD12 (ENSGEVG00005014847)	HMG20B (ENSGEVG00005014871)	GIPC3 (ENSGEVG00005014894)	TBXA2R (ENSGEVG00005014923)
Abingdon island giant tortoise	MODERN SPECIES	2070												REXO1 (ENSCABG00000002446) #19	ENSCABG00000002443	ENSCABG00000002440 #20	ONECUT3 (ENSCABG00000002438) ##21	TCF3 (ENSCABG00000002433) #22	ENSCABG00000002420 #23	ENSCABG00000002416 ##24	MEX3D (ENSCABG00000002414) #25	ENSCABG00000002407	ENSCABG00000002184	NFIC (ENSCABG00000002165)
Emydidae	ANCESTRAL SPECIES	14	ENSGT00940000159808	ENSGT00390000006337	ENSGT00720000108823	ENSGT00390000005235 #7	ENSGT00390000013515 #8	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000158590 #19	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a
painted turtle	MODERN SPECIES	763	DOT1L (ENSCPBG00000018560) #8	AP3D1 (ENSCPBG00000018531) #9	IZUMO4 (ENSCPBG00000018518) #10	MOB3A (ENSCPBG00000018517) #11	MKNK2 (ENSCPBG00000018511) #12	BTBD2 (ENSCPBG00000018507) #13	CSNK1G2 (ENSCPBG00000018498) #14	SCAMP4 (ENSCPBG00000018495) #15	ATP8B3 (ENSCPBG00000018487) #20	ONECUT3 (ENSCPBG00000018480) ##21	ENSCPBG00000018475	ENSCPBG00000018471	ABHD17A (ENSCPBG00000018468) #17	ENSCPBG00000018462	REXO1 (ENSCPBG00000018456) #19	TCF3 (ENSCPBG00000018451) #22	UQCR11 (ENSCPBG00000018448) #23	ENSCPBG00000018443 ##24	MEX3D (ENSCPBG00000018438) #25	ENSCPBG00000018431	ENSCPBG00000018422	ENSCPBG00000018419	ENSCPBG00000017241	NFIC (ENSCPBG00000017128)	DOHH (ENSCPBG00000017126)	ENSCPBG00000017125	FZR1 (ENSCPBG00000017124)	ENSCPBG00000017123	ENSCPBG00000017122	ENSCPBG00000017121	ENSCPBG00000017119
Three-toed box turtle	MODERN SPECIES	92	DOT1L (ENSTMTG00000022633) #8	AP3D1 (ENSTMTG00000022649) #9	MOB3A (ENSTMTG00000022663) #11	MKNK2 (ENSTMTG00000022669) #12	ENSTMTG00000022685 #13	CSNK1G2 (ENSTMTG00000022686) #14	SCAMP4 (ENSTMTG00000022689) #15	ENSTMTG00000022694	ENSTMTG00000022701	ABHD17A (ENSTMTG00000022703) #17	ENSTMTG00000022708	ENSTMTG00000022709	REXO1 (ENSTMTG00000022711) #19	ENSTMTG00000022713 #20	ONECUT3 (ENSTMTG00000022716) ##21	TCF3 (ENSTMTG00000022717) #22	ENSTMTG00000022724	ENSTMTG00000022725 ##24	MEX3D (ENSTMTG00000022729) #25	ENSTMTG00000022734	ENSTMTG00000022764	ENSTMTG00000022786	NFIC (ENSTMTG00000022787)	DOHH (ENSTMTG00000022789)	ENSTMTG00000022790	FZR1 (ENSTMTG00000022792)	TEKTIP1 (ENSTMTG00000022799)	ENSTMTG00000008062	MFSD12 (ENSTMTG00000008079)	HMG20B (ENSTMTG00000008113)	ENSTMTG00000008123
Chinese turtle	MODERN SPECIES	1522	AMH (ENSPSIG00000010181)	SF3A2 (ENSPSIG00000010839)	PLEKHJ1 (ENSPSIG00000011719) #7	DOT1L (ENSPSIG00000011747) #8	AP3D1 (ENSPSIG00000011804) #9	MOB3A (ENSPSIG00000015264) #11	MKNK2 (ENSPSIG00000015269) #12	BTBD2 (ENSPSIG00000015526) #13	SCAMP4 (ENSPSIG00000015532) #15	ENSPSIG00000016262	ENSPSIG00000016540	ABHD17A (ENSPSIG00000016558) #17	REXO1 (ENSPSIG00000016611) #19	ATP8B3 (ENSPSIG00000016944) #20	ENSPSIG00000000518	TCF3 (ENSPSIG00000004202) #22	ENSPSIG00000004326 ##24	MEX3D (ENSPSIG00000004353) #25	ENSPSIG00000004377
Lepidosauria	ANCESTRAL SPECIES	33	ENSGT00550000075067 #9	ENSGT00390000015418 #10	ENSGT01050000244898.a.a.a.a #11	ENSGT00940000154587.a.b #12	ENSGT00940000159179 #13	ENSGT00940000156470 #14	ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00950000183102.B
Episquamata	ANCESTRAL SPECIES	18	ENSGT00940000161213	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00950000183005.b.c ##24	ENSGT01000000214836	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000165800	ENSGT00940000162150 #15	ENSGT00940000156470 #14	ENSGT00940000159179 #13	ENSGT00940000154587.a.b #12	ENSGT01050000244898.a.a.a.a #11	ENSGT00390000015418 #10	ENSGT00550000075067 #9	ENSGT00390000013515 #8	ENSGT00390000005235 #7	ENSGT00720000108823
Laterata	ANCESTRAL SPECIES	37	ENSGT01030000234559.a.a.a	ENSGT00390000003420.b	ENSGT00940000161213	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00940000165115	ENSGT00390000005318.a	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00940000158590 #19	ENSGT00940000160463.e #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT01000000214836	ENSGT00950000183005.b.d #24	ENSGT00940000162613 #25	ENSGT00940000165800	ENSGT00940000162150 #15	ENSGT00940000156470 #14	ENSGT00940000159179 #13	ENSGT00940000154587.a.b #12	ENSGT01050000244898.a.a.a.a #11	ENSGT00390000015418 #10	ENSGT00550000075067 #9	ENSGT00390000013515 #8	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00390000006337
Common wall lizard	MODERN SPECIES	9	CILP2 (ENSPMRG00000021078)	ENSPMRG00000021092	TBXA2R (ENSPMRG00000021117)	ENSPMRG00000021124	HMG20B (ENSPMRG00000021128)	FZR1 (ENSPMRG00000021144)	ENSPMRG00000021159	DOHH (ENSPMRG00000021166)	ENSPMRG00000021682	NFIC (ENSPMRG00000023298)	ABHD17A (ENSPMRG00000023302) #17	ENSPMRG00000023304	REXO1 (ENSPMRG00000023316) #19	ATP8B3 (ENSPMRG00000023348) #20	ONECUT3 (ENSPMRG00000023379) ##21	TCF3 (ENSPMRG00000023382) #22	ENSPMRG00000023385	MBD3 (ENSPMRG00000023387) #24	MEX3D (ENSPMRG00000023388) #25	ENSPMRG00000023392	RNF224 (ENSPMRG00000023403)	ENSPMRG00000023405	R3HDM4 (ENSPMRG00000023408)	MED16 (ENSPMRG00000023414)	CFD (ENSPMRG00000023415)	PLPPR3 (ENSPMRG00000023417)	PTBP1 (ENSPMRG00000023419)	ENSPMRG00000023423	ENSPMRG00000023426	ENSPMRG00000023427	SIRT6 (ENSPMRG00000023429)
Argentine black and white tegu	MODERN SPECIES	106	FZR1 (ENSSMRG00000010558)	TEKTIP1 (ENSSMRG00000010556)	ENSSMRG00000010554	MFSD12 (ENSSMRG00000010553)	ENSSMRG00000010551	ENSSMRG00000010549	ENSSMRG00000004021	NFIC (ENSSMRG00000004004)	ABHD17A (ENSSMRG00000004000) #17	KLF16 (ENSSMRG00000003993) #18	REXO1 (ENSSMRG00000003986) #19	ENSSMRG00000003975	ENSSMRG00000003970 #20	ENSSMRG00000003958 #20	ONECUT3 (ENSSMRG00000003944) ##21	TCF3 (ENSSMRG00000003939) #22	MBD3 (ENSSMRG00000003933) #24	MEX3D (ENSSMRG00000003931) #25	ENSSMRG00000003845	SCAMP4 (ENSSMRG00000003842) #15	CSNK1G2 (ENSSMRG00000003837) #14	BTBD2 (ENSSMRG00000003816) #13	MKNK2 (ENSSMRG00000003805) #12	MOB3A (ENSSMRG00000003799) #11	AP3D1 (ENSSMRG00000002687) #9	ENSSMRG00000002684	DOT1L (ENSSMRG00000002660) #8	PLEKHJ1 (ENSSMRG00000002647) #7	SF3A2 (ENSSMRG00000002642)	AMH (ENSSMRG00000002623)	OAZ1 (ENSSMRG00000002617)
Toxicofera	ANCESTRAL SPECIES	31	ENSGT00390000003420.b	ENSGT00940000161213	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000165800	ENSGT00940000162150 #15	ENSGT00940000156470 #14	ENSGT00940000159179 #13	ENSGT00940000154587.a.b #12	ENSGT01050000244898.a.a.a.a #11	ENSGT00960000190793	ENSGT00550000075067 #9	ENSGT00390000013515 #8	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000161213	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00960000190694	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00990000211571	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000165800	ENSGT00940000162150 #15	ENSGT00940000156470 #14	ENSGT00940000159179 #13	ENSGT00940000154587.a.b.b #12	ENSGT01050000244898.a.a.a.a #11	ENSGT00960000190793	ENSGT00550000075067 #9	ENSGT00390000013515 #8	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00390000006337
Indian cobra	MODERN SPECIES		TBXA2R (ENSNNAG00000012629)	ENSNNAG00000012654	HMG20B (ENSNNAG00000012669)	FZR1 (ENSNNAG00000012729)	TEKTIP1 (ENSNNAG00000012744)	MFSD12 (ENSNNAG00000012793)	ENSNNAG00000012815	ENSNNAG00000012846	ENSNNAG00000013151	NFIC (ENSNNAG00000000272)	ABHD17A (ENSNNAG00000000284) #17	ENSNNAG00000000301	REXO1 (ENSNNAG00000000312) #19	ATP8B3 (ENSNNAG00000000342) #20	ONECUT3 (ENSNNAG00000000374) ##21	TCF3 (ENSNNAG00000000394) #22	ENSNNAG00000000420	ENSNNAG00000000432 ##24	MEX3D (ENSNNAG00000000446) #25	ENSNNAG00000000480	SCAMP4 (ENSNNAG00000000575) #15	CSNK1G2 (ENSNNAG00000000601) #14	BTBD2 (ENSNNAG00000000618) #13	MKNK2 (ENSNNAG00000000630) #12	MOB3A (ENSNNAG00000000647) #11	ENSNNAG00000000652	ENSNNAG00000000664 #9	DOT1L (ENSNNAG00000000692) #8	PLEKHJ1 (ENSNNAG00000000771) #7	SF3A2 (ENSNNAG00000000788)	AMH (ENSNNAG00000000801)
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00940000161213	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00960000190694	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00990000211571.b	ENSGT00950000183005.b.c ##24	ENSGT00990000211571.a	ENSGT00940000162613 #25	ENSGT00940000165800	ENSGT00940000162150 #15	ENSGT00940000156470 #14	ENSGT00940000159179 #13	ENSGT00940000154587.a.b.b #12	ENSGT01050000244898.a.a.a.a #11	ENSGT00960000190793	ENSGT00550000075067 #9	ENSGT00390000013515 #8	ENSGT00390000005235 #7	ENSGT00720000108823
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00940000161213	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00960000190694	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT00940000155854 #17	ENSGT00940000163280 #18	ENSGT00950000185823	ENSGT00940000158590 #19	ENSGT00940000155505.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00990000211571.b	ENSGT00990000211571.a	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25	ENSGT00940000165800	ENSGT00940000162150 #15	ENSGT00940000156470 #14	ENSGT00940000159179 #13	ENSGT00940000154587.a.b.b #12	ENSGT01050000244898.a.a.a.a #11	ENSGT00960000190793	ENSGT00550000075067 #9	ENSGT00390000013515 #8	ENSGT00390000005235 #7	ENSGT00720000108823
Eastern brown snake	MODERN SPECIES	10	HMG20B (ENSPTXG00000000053)	FZR1 (ENSPTXG00000000074)	TEKTIP1 (ENSPTXG00000000109)	MFSD12 (ENSPTXG00000000131)	ENSPTXG00000000152	ENSPTXG00000000414	NFIC (ENSPTXG00000001935)	ABHD17A (ENSPTXG00000001937) #17	KLF16 (ENSPTXG00000001939) #18	ENSPTXG00000001941	REXO1 (ENSPTXG00000001945) #19	ENSPTXG00000001948 #20	ENSPTXG00000001950 #20	ONECUT3 (ENSPTXG00000001952) ##21	ENSPTXG00000001953	TCF3 (ENSPTXG00000001955) #22	ENSPTXG00000001956	ENSPTXG00000001957 ##24	MEX3D (ENSPTXG00000001961) #25	ENSPTXG00000001963	SCAMP4 (ENSPTXG00000001984) #15	CSNK1G2 (ENSPTXG00000001986) #14	BTBD2 (ENSPTXG00000001991) #13	MKNK2 (ENSPTXG00000001992) #12	MOB3A (ENSPTXG00000001997) #11	ENSPTXG00000002003	AP3D1 (ENSPTXG00000002010) #9	DOT1L (ENSPTXG00000002062) #8	PLEKHJ1 (ENSPTXG00000002073) #7	SF3A2 (ENSPTXG00000002075)	AMH (ENSPTXG00000002079)
Mainland tiger snake	MODERN SPECIES	144					MFSD12 (ENSNSUG00000007078)	ENSNSUG00000007079	ENSNSUG00000007080	ENSNSUG00000007081	NFIC (ENSNSUG00000007496)	ABHD17A (ENSNSUG00000007499) #17	KLF16 (ENSNSUG00000007500) #18	REXO1 (ENSNSUG00000007501) #19	ENSNSUG00000007515	ATP8B3 (ENSNSUG00000007516) #20	ONECUT3 (ENSNSUG00000007538) ##21	TCF3 (ENSNSUG00000007539) #22	ENSNSUG00000007545	ENSNSUG00000007549 ##24	MEX3D (ENSNSUG00000007550) #25	ENSNSUG00000007551	SCAMP4 (ENSNSUG00000008077) #15	CSNK1G2 (ENSNSUG00000008078) #14	BTBD2 (ENSNSUG00000008079) #13	MKNK2 (ENSNSUG00000008080) #12	MOB3A (ENSNSUG00000008096) #11	ENSNSUG00000008097	AP3D1 (ENSNSUG00000008099) #9	DOT1L (ENSNSUG00000008303) #8	PLEKHJ1 (ENSNSUG00000008324) #7	SF3A2 (ENSNSUG00000008325)	AMH (ENSNSUG00000008326)
Blue-lipped sea krait	MODERN SPECIES	3247																TCF3 (ENSLLTG00000017633) #22	ENSLLTG00000017631	ENSLLTG00000017628 ##24
tuatara	MODERN SPECIES	632						CSNK1G2 (ENSSPUG00000016074) #14	SCAMP4 (ENSSPUG00000016062) #15	ENSSPUG00000015977	ENSSPUG00000015961	ABHD17A (ENSSPUG00000015953) #17	KLF16 (ENSSPUG00000015949) #18	REXO1 (ENSSPUG00000015936) #19	ENSSPUG00000015927	ATP8B3 (ENSSPUG00000015886) #20	ONECUT3 (ENSSPUG00000015874) ##21	TCF3 (ENSSPUG00000015862) #22	UQCR11 (ENSSPUG00000015857) #23	ENSSPUG00000015853 ##24	MEX3D (ENSSPUG00000015849) #25	UNC13A (ENSSPUG00000015816)	NFIC (ENSSPUG00000015778)	DOHH (ENSSPUG00000015767)	FZR1 (ENSSPUG00000015746)	TEKTIP1 (ENSSPUG00000015730)	MFSD12 (ENSSPUG00000015627)	HMG20B (ENSSPUG00000015595)	ENSSPUG00000015524	PIP5K1C (ENSSPUG00000015473)	TJP3 (ENSSPUG00000015413)	APBA3 (ENSSPUG00000015379)	MRPL54 (ENSSPUG00000015361)
Anura	ANCESTRAL SPECIES	273										ENSGT00940000162150 #15	ENSGT00940000165800	ENSGT00940000155854 #17	ENSGT00940000158590 #19	ENSGT00940000160463.a #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.c ##24	ENSGT00940000162613 #25
Frog	MODERN SPECIES		ENSXETG00000042019	tex15 (ENSXETG00000045239)	ENSXETG00000049028	dusp4 (ENSXETG00000008156)	tnks (ENSXETG00000008155)	ppp1r3b (ENSXETG00000008154)	eri1 (ENSXETG00000008153)	dohh (ENSXETG00000040489)	ENSXETG00000046115	nfic (ENSXETG00000008149)	rorb.2 (ENSXETG00000008148)	abhd17a (ENSXETG00000008147) #17	rexo1 (ENSXETG00000008146) #19	atp8b3 (ENSXETG00000008135) #20	onecut3 (ENSXETG00000040565) ##21	tcf3 (ENSXETG00000013589) #22	uqcr11 (ENSXETG00000037652) #23	mbd3 (ENSXETG00000013593) ##24	mex3d (ENSXETG00000040904) #25	unc13a (ENSXETG00000013597)	ap1m1 (ENSXETG00000013600)	upf1 (ENSXETG00000013602)	ENSXETG00000039633	ENSXETG00000013605	arrdc2 (ENSXETG00000013606)	pigg (ENSXETG00000003720)	atp5me (ENSXETG00000036008)	cwf19l1 (ENSXETG00000003719)	gak (ENSXETG00000003718)	gadd45b (ENSXETG00000003717)	gng7 (ENSXETG00000046876)
Leishan spiny toad	MODERN SPECIES		BTBD2 (ENSLLEG00000000483) #13	SCAMP4 (ENSLLEG00000000600) #15	ENSLLEG00000000617	ENSLLEG00000000653	ENSLLEG00000000661	ENSLLEG00000000671	ENSLLEG00000000685 #17	REXO1 (ENSLLEG00000000743) #19	ENSLLEG00000000773	ENSLLEG00000000786 #20	ENSLLEG00000000872	ENSLLEG00000000905 #20	ENSLLEG00000001099 #20	ONECUT3 (ENSLLEG00000001236) ##21	ENSLLEG00000001257	TCF3 (ENSLLEG00000001305) #22	ENSLLEG00000001474	ENSLLEG00000001487	MFSD12 (ENSLLEG00000001517)	ENSLLEG00000001578	ENSLLEG00000001616	FZR1 (ENSLLEG00000001634)	ENSLLEG00000001670	ENSLLEG00000001680	ENSLLEG00000001696	ENSLLEG00000001764	ENSLLEG00000001905	ENSLLEG00000001907	ENSLLEG00000001913	ENSLLEG00000001921	ENSLLEG00000001965
Coelacanth	MODERN SPECIES	334							TNFAIP8L1 (ENSLACG00000017862)	MYDGF (ENSLACG00000017834)	ENSLACG00000017821	DPP9 (ENSLACG00000017779)	FEM1A (ENSLACG00000017622)	ENSLACG00000017601	REXO1 (ENSLACG00000017555) #19	ATP8B3 (ENSLACG00000017414) #20	ONECUT3 (ENSLACG00000017269) ##21	TCF3 (ENSLACG00000016589) #22	UQCR11 (ENSLACG00000016539) #23	mbd3a (ENSLACG00000016498) #24	MEX3D (ENSLACG00000016407) #25	mbd3b (ENSLACG00000016232)	ENSLACG00000015658	ENSLACG00000014913	ENSLACG00000013978	HCN2 (ENSLACG00000012418)	POLRMT (ENSLACG00000011518)	FGF22 (ENSLACG00000010370)	RNF126 (ENSLACG00000009793)	FSTL3 (ENSLACG00000009422)	ENSLACG00000008682	ENSLACG00000008512	ENSLACG00000022351
Actinopterygii	ANCESTRAL SPECIES	139														ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179 #13	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b	ENSGT00940000154662.d	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088	ENSGT00940000159237
Reedfish	MODERN SPECIES	3	ENSECRG00000017530	ENSECRG00000017545	ENSECRG00000017584	ENSECRG00000017657	ENSECRG00000017679	ENSECRG00000017696	ENSECRG00000017716	ENSECRG00000017749	ENSECRG00000017874 #20	ONECUT3 (ENSECRG00000018237) ##21	foxq2 (ENSECRG00000018258)	ENSECRG00000018276	pias4a (ENSECRG00000018290)	map2k2a (ENSECRG00000018359)	ZBTB7A (ENSECRG00000018510)	tcf3b (ENSECRG00000018537) #22	UQCR11 (ENSECRG00000018568) #23	MBD3 (ENSECRG00000018591) #24	MEX3D (ENSECRG00000018631) #25	mbd3b (ENSECRG00000018689)	ENSECRG00000018977	hmg20b (ENSECRG00000019498)	btbd2a (ENSECRG00000019539) #13	ENSECRG00000019632	creb3l3a (ENSECRG00000019697)	ENSECRG00000019730	sirt6 (ENSECRG00000019747)	ENSECRG00000019776	ENSECRG00000019805	EBI3 (ENSECRG00000019823)	yju2 (ENSECRG00000019845)
Neopterygii	ANCESTRAL SPECIES	172				ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500	ENSGT00940000160463 #20	ENSGT00950000183103.d.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a	ENSGT00940000153487.b.a	ENSGT00940000166752	ENSGT00940000157036 #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905	ENSGT01100000264330	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179 #13	ENSGT00940000159261	ENSGT00940000160088	ENSGT01030000234534.B.a.a.a.a
Spotted gar	MODERN SPECIES	657	cks2 (ENSLOCG00000005754)	shc2 (ENSLOCG00000005770)	ENSLOCG00000005794	DOT1L (ENSLOCG00000005809) #8	sf3a2 (ENSLOCG00000005835)	ENSLOCG00000005854	oaz1a (ENSLOCG00000005874)	org (ENSLOCG00000005893)	lingo3a (ENSLOCG00000017635)	ENSLOCG00000005917 #20	ONECUT3 (ENSLOCG00000005935) ##21	foxq2 (ENSLOCG00000005947)	pias4a (ENSLOCG00000005962)	map2k2a (ENSLOCG00000005968)	ENSLOCG00000005993	tcf3a (ENSLOCG00000006013) #22	MBD3 (ENSLOCG00000006043) #24	mbd3b (ENSLOCG00000006065)	ENSLOCG00000006087	hmg20b (ENSLOCG00000006147)	btbd2a (ENSLOCG00000006170) #13	eef2b (ENSLOCG00000006185)	creb3l3a (ENSLOCG00000006221)	rxfp3.2b (ENSLOCG00000017636)	ANKRD24 (ENSLOCG00000006239)	ENSLOCG00000006256	shda (ENSLOCG00000006271)	s1pr3a (ENSLOCG00000017637)	ENSLOCG00000006291	mier2 (ENSLOCG00000006300)	ENSLOCG00000006325
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	199		ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT01100000264330	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000159179.g #13	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a
Clupeocephala	ANCESTRAL SPECIES	125	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000157036.e.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a	ENSGT00940000158050	ENSGT00390000009230.b
Otomorpha	ANCESTRAL SPECIES	5	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT01100000264042	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Otophysi	ANCESTRAL SPECIES	52	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT01100000264042	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Characiphysae	ANCESTRAL SPECIES	28	ENSGT01030000234519.e.a.a.b.b.a.b.h	ENSGT01030000234519.e.a.a.b.a.a.b.b.b.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.f	ENSGT00940000162569.b.k.a	ENSGT00940000165296	ENSGT00940000161259.B.a	ENSGT00940000164811.a.a	ENSGT00550000075067 #9	ENSGT00940000153942.a.f	ENSGT00940000157273	ENSGT00440000034888	ENSGT00940000166572	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT01100000264042	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00910000144271.A.b
Channel catfish	MODERN SPECIES	1	tle2a (ENSIPUG00000001748)	ENSIPUG00000001716	ENSIPUG00000001703	tle5 (ENSIPUG00000001688)	gna11a (ENSIPUG00000001673)	gna15.4 (ENSIPUG00000001668)	C2CD4C (ENSIPUG00000001665)	ap3d1 (ENSIPUG00000001409) #9	hdgfl2 (ENSIPUG00000001382)	UBXN6 (ENSIPUG00000001356)	chaf1a (ENSIPUG00000001333)	scamp4 (ENSIPUG00000001316)	pias4 (ENSIPUG00000001271)	map2k2a (ENSIPUG00000001241)	ENSIPUG00000001238	tcf3b (ENSIPUG00000001114) #22	MBD3 (ENSIPUG00000001096) #24	mbd3b (ENSIPUG00000001063)	unc13a (ENSIPUG00000001021)	hmg20b (ENSIPUG00000000999)	btbd2a (ENSIPUG00000000969) #13	ENSIPUG00000000950	creb3l3a (ENSIPUG00000000934)	rxfp3.2b (ENSIPUG00000000930)	celf5 (ENSIPUG00000000913)	rgmd (ENSIPUG00000000897)	hsd11b1l (ENSIPUG00000000890)	c10h19orf70 (ENSIPUG00000000885)	ENSIPUG00000000873	ENSIPUG00000000870	ENSIPUG00000000863
Characiphysae_b	ANCESTRAL SPECIES	25	ENSGT01030000234519.e.a.a.b.b.a.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.b.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.f	ENSGT00940000162569.b.k.a	ENSGT00940000165296	ENSGT00940000161259.B.a	ENSGT00940000164811.a.a	ENSGT00550000075067 #9	ENSGT00940000153942.a.f	ENSGT00940000157273	ENSGT00440000034888	ENSGT00940000166572	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00390000018299.a #23	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00910000144271.A.b
Characoidei	ANCESTRAL SPECIES	223	ENSGT01030000234519.e.a.a.b.b.a.b.h	ENSGT01030000234519.e.a.a.b.b.a.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.f	ENSGT00940000162569.b.k.a	ENSGT00940000165296	ENSGT00940000161259.B.a	ENSGT00940000164811.a.a	ENSGT00550000075067 #9	ENSGT00940000153942.a.f	ENSGT00940000157273	ENSGT00440000034888	ENSGT00940000166572	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT01100000264042	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B
Red-bellied piranha	MODERN SPECIES	82	ENSPNAG00000018379	tle5 (ENSPNAG00000018350)	gna11a (ENSPNAG00000018340)	gna15.4 (ENSPNAG00000018305)	ENSPNAG00000018296	C2CD4C (ENSPNAG00000018287)	cdc34a (ENSPNAG00000018281)	ap3d1 (ENSPNAG00000003512) #9	hdgfl2 (ENSPNAG00000017800)	ubxn6 (ENSPNAG00000017694)	chaf1a (ENSPNAG00000017687)	scamp4 (ENSPNAG00000017680)	pias4a (ENSPNAG00000017645)	map2k2a (ENSPNAG00000017601)	ENSPNAG00000017546	tcf3b (ENSPNAG00000017522) #22	ENSPNAG00000017417	ENSPNAG00000017398 #24	mbd3b (ENSPNAG00000017371)	ENSPNAG00000003473	smim7 (ENSPNAG00000016898)	tmem38a (ENSPNAG00000016881)	comp (ENSPNAG00000016853)	CRTC1 (ENSPNAG00000016779)	klhl26 (ENSPNAG00000016708)	ddx49 (ENSPNAG00000003429)	lsm4 (ENSPNAG00000016598)	rab3ab (ENSPNAG00000016566)	ENSPNAG00000016529	mpv17l2 (ENSPNAG00000005362)	ENSPNAG00000016481
Electric eel	MODERN SPECIES	685							cdc34a (ENSEEEG00000013928)	ap3d1 (ENSEEEG00000013917) #9	hdgfl2 (ENSEEEG00000013905)	ubxn6 (ENSEEEG00000013903)	chaf1a (ENSEEEG00000013900)	scamp4 (ENSEEEG00000013899)	pias4a (ENSEEEG00000013886)	map2k2a (ENSEEEG00000013748)	ENSEEEG00000013728	tcf3b (ENSEEEG00000013710) #22	UQCR11 (ENSEEEG00000013707) #23	ENSEEEG00000013677 #24	ENSEEEG00000013674
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00940000155914.c.a.c	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000159808.c	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT01100000264042	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00910000144271.A.b
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	321	ENSGT00940000155914.c.a.c.b	ENSGT00390000013515.f #8	ENSGT00390000006337.a	ENSGT00990000206265	ENSGT00940000159808.c	ENSGT00390000006809.b	ENSGT00940000164500.b.b	ENSGT00940000164108.b.a.b	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b.c ##21	ENSGT00940000166634.b	ENSGT01030000234539.a.a.a.f.f	ENSGT00940000153487.b.a.s.a.b	ENSGT00940000166752.c	ENSGT00940000157036.e.a.a.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b.b #24	ENSGT00940000155402.a.a.c	ENSGT00940000154929.B	ENSGT00940000161213.b	ENSGT00940000161905.a.b	ENSGT00940000166909	ENSGT00940000161213.a	ENSGT00940000159179.h.b #13
Cyprininae_a	ANCESTRAL SPECIES	40	ENSGT00940000155914.c.a.c.a	ENSGT00390000013515.e #8	ENSGT00390000006337.b	ENSGT00990000206265	ENSGT00940000159808.c	ENSGT00390000006809.b	ENSGT00940000164500.b.b	ENSGT00940000164108.b.a.b	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b.c ##21	ENSGT00940000166634.b	ENSGT01030000234539.a.a.a.f.f	ENSGT00940000153487.b.a.s.a.b	ENSGT00940000166752.c	ENSGT00940000157036.e.a.a.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b.b #24	ENSGT00940000155402.a.a.c	ENSGT00940000154929.B	ENSGT00940000161213.b	ENSGT00940000161905.a.b	ENSGT00940000161213.a	ENSGT00940000159179.h.b #13	ENSGT00940000159261.d.a.a	ENSGT01030000234534.B.a.a.a.a.a.a.c	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d.n.a	ENSGT00950000183112.b.a.a.a.a	ENSGT00940000162487.u.a	ENSGT00390000002629.ab
Golden-line barbel	MODERN SPECIES	223						lingo3a (ENSSGRG00000048426)	lingo3a (ENSSGRG00000048425)	nfil3-4 (ENSSGRG00000048424)	nfil3-4 (ENSSGRG00000048423)	ENSSGRG00000048421	ENSSGRG00000048420 ##21	foxq2 (ENSSGRG00000048419)	pias4a (ENSSGRG00000048371)	map2k2a (ENSSGRG00000047841)	ENSSGRG00000047814	tcf3b (ENSSGRG00000047803) #22	UQCR11 (ENSSGRG00000047795) #23	ENSSGRG00000047793 #24	unc13a (ENSSGRG00000047771)	hmg20b (ENSSGRG00000047767)	btbd2a (ENSSGRG00000047765) #13	ENSSGRG00000047764	ENSSGRG00000047762	creb3l3a (ENSSGRG00000047761)	rxfp3.2b (ENSSGRG00000047760)	ENSSGRG00000047758	celf5a (ENSSGRG00000047757)	ENSSGRG00000047756	rgmd (ENSSGRG00000047755)	hsd11b1la (ENSSGRG00000047754)	micos13 (ENSSGRG00000047753)
Common carp reference	MODERN SPECIES	5	fkbp8 (ENSCCRG00000006820)	ell (ENSCCRG00000059038)	ENSCCRG00000012505 #8	amh (ENSCCRG00000072618)	ENSCCRG00000078544	org (ENSCCRG00000012537)	lingo3a (ENSCCRG00000060670)	nfil3-4 (ENSCCRG00000059003)	ENSCCRG00000077658	ENSCCRG00000074375 #20	ENSCCRG00000064529 ##21	foxq2 (ENSCCRG00000013528)	pias4a (ENSCCRG00000012580)	map2k2a (ENSCCRG00000074928)	ENSCCRG00000013144	tcf3b (ENSCCRG00000057954) #22	mbd3b (ENSCCRG00000013540)	unc13a (ENSCCRG00000000378)	hmg20b (ENSCCRG00000075760)	btbd2a (ENSCCRG00000001875) #13	ENSCCRG00000057993	creb3l3a (ENSCCRG00000071938)	rxfp3.2b (ENSCCRG00000074916)	celf5a (ENSCCRG00000008023)	rgmd (ENSCCRG00000072729)	hsd11b1la (ENSCCRG00000012407)	micos13 (ENSCCRG00000012405)	ENSCCRG00000038663	ENSCCRG00000038649	ENSCCRG00000009003	ENSCCRG00000065890
Goldfish	MODERN SPECIES	14	NTRK2 (ENSCARG00000015645)	agtpbp1 (ENSCARG00000015543)	naa35 (ENSCARG00000015405)	gfpt1 (ENSCARG00000015053)	ENSCARG00000015021	ANTXR1 (ENSCARG00000014788)	ENSCARG00000014767	GPR153 (ENSCARG00000014757)	acot7 (ENSCARG00000014563)	lmcd1 (ENSCARG00000014531)	IP6K1 (ENSCARG00000014523)	ENSCARG00000014520	ENSCARG00000014515	pias4a (ENSCARG00000014501)	ENSCARG00000014399	tcf3b (ENSCARG00000014281) #22	UQCR11 (ENSCARG00000014267) #23	ENSCARG00000014246 #24	ENSCARG00000014235	frem1b (ENSCARG00000014102)	ENSCARG00000014083	ENSCARG00000014079	ENSCARG00000014069	nrd1b (ENSCARG00000010174)	axdnd1 (ENSCARG00000010026)	nphs2 (ENSCARG00000010001)	tdrd5 (ENSCARG00000009990)	ENSCARG00000008654	ENSCARG00000008596	ENSCARG00000008556	ENSCARG00000008532
Cyprininae	ANCESTRAL SPECIES	113	ENSGT00950000183049.C.a.a.g.a	ENSGT00940000156705.d	ENSGT00940000155914.c.a.c.a	ENSGT00390000013515.e #8	ENSGT00390000006337.b	ENSGT00940000159808.d	ENSGT00390000006809.a	ENSGT00940000164500.b.a	ENSGT00940000164108.b.a.a	ENSGT00950000183103.d.b.a.b.d ##21	ENSGT00940000166634.a	ENSGT01030000234539.a.a.a.f.e	ENSGT00940000153487.b.a.s.a.a	ENSGT00940000166752.d	ENSGT00940000157036.e.a.b #22	ENSGT00940000157036.e.a.a.b #22	ENSGT01100000264042	ENSGT00950000183005.b.b.a #24	ENSGT00940000155402.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	543							ENSGT00940000159808.d	ENSGT00390000006809.a	ENSGT00940000164500.b.a	ENSGT00940000164108.b.a.a	ENSGT00950000183103.d.b.a.b.d ##21	ENSGT00940000166634.a	ENSGT01030000234539.a.a.a.f.e	ENSGT00940000153487.b.a.s.a.a	ENSGT00940000166752.d	ENSGT00940000157036.e.a.a.b #22	ENSGT01100000264042	ENSGT00950000183005.b.b.a #24	ENSGT00940000155402.a.a.d
Common carp reference	MODERN SPECIES	43	tmem59l (ENSCCRG00000043131)	ssbp4 (ENSCCRG00000074172)	fkbp8 (ENSCCRG00000066292)	ell (ENSCCRG00000006843)	ENSCCRG00000013709 #8	oaz1a (ENSCCRG00000075310)	org (ENSCCRG00000012483)	lingo3a (ENSCCRG00000059109)	nfil3-4 (ENSCCRG00000081096)	ENSCCRG00000075061	ENSCCRG00000037829 ##21	ENSCCRG00000060562	pias4a (ENSCCRG00000074259)	map2k2a (ENSCCRG00000012624)	ENSCCRG00000013530	tcf3b (ENSCCRG00000013163) #22	ENSCCRG00000013220 #24	unc13a (ENSCCRG00000017112)	btbd2a (ENSCCRG00000020922) #13	creb3l3a (ENSCCRG00000076475)	rxfp3.2b (ENSCCRG00000063036)	celf5a (ENSCCRG00000038101)	rgmd (ENSCCRG00000038208)	hsd11b1la (ENSCCRG00000008075)	micos13 (ENSCCRG00000008137)	ENSCCRG00000013739	ENSCCRG00000008081	ENSCCRG00000008087	ENSCCRG00000008141	ENSCCRG00000013292	ENSCCRG00000080006
Golden-line barbel	MODERN SPECIES	80	ENSSGRG00000031231	fkbp8 (ENSSGRG00000031230)	ENSSGRG00000031229	ell (ENSSGRG00000031228)	DOT1L (ENSSGRG00000030620) #8	amh (ENSSGRG00000030600)	ENSSGRG00000030599	OAZ1 (ENSSGRG00000030597)	org (ENSSGRG00000030593)	lingo3a (ENSSGRG00000030591)	nfil3-4 (ENSSGRG00000030590)	ENSSGRG00000030585 ##21	foxq2 (ENSSGRG00000030584)	pias4a (ENSSGRG00000030505)	map2k2a (ENSSGRG00000030424)	tcf3b (ENSSGRG00000030421) #22	ENSSGRG00000030420	ENSSGRG00000030356 #24	mbd3b (ENSSGRG00000030352)	ENSSGRG00000030350	ENSSGRG00000027989	hmg20b (ENSSGRG00000027974)	btbd2a (ENSSGRG00000027933) #13	ENSSGRG00000027922	creb3l3a (ENSSGRG00000027920)	rxfp3.2b (ENSSGRG00000027917)	celf5a (ENSSGRG00000027814)	hsd11b1la (ENSSGRG00000027808)	micos13 (ENSSGRG00000027807)	ENSSGRG00000027803	ENSSGRG00000027801
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	605																tcf3b (ENSCARG00000024948) #22
Goldfish	MODERN SPECIES	41	wwtr1 (ENSCARG00000023173)	ANKUB1 (ENSCARG00000023181)	ENSCARG00000023202	ENSCARG00000023322	ENSCARG00000023342	ENSCARG00000023352	ENSCARG00000023358	senp5 (ENSCARG00000023380)	ncbp2 (ENSCARG00000023398)	rbbp9 (ENSCARG00000023428)	arhgef3 (ENSCARG00000023498)	ENSCARG00000025455	ENSCARG00000025466	IP6K1 (ENSCARG00000025471)	ENSCARG00000025479	tcf3b (ENSCARG00000025491) #22	ENSCARG00000025744 #24	unc13a (ENSCARG00000025847)	s100b (ENSCARG00000026740)	lrrc39 (ENSCARG00000026766)	trmt13 (ENSCARG00000026808)	OSBPL1A (ENSCARG00000026982)
Cyprininae	ANCESTRAL SPECIES	113	ENSGT00390000008279.b.j	ENSGT00950000183049.C.a.a.g.a	ENSGT00940000156705.d	ENSGT00940000155914.c.a.c.a	ENSGT00390000013515.e #8	ENSGT00390000006337.b	ENSGT00940000159808.d	ENSGT00390000006809.a	ENSGT00940000164500.b.a	ENSGT00940000164108.b.a.a	ENSGT00950000183103.d.b.a.b.d ##21	ENSGT00940000166634.a	ENSGT01030000234539.a.a.a.f.e	ENSGT00940000153487.b.a.s.a.a	ENSGT00940000166752.d	ENSGT00940000157036.e.a.b #22	ENSGT00940000157036.e.a.a.b #22	ENSGT01100000264042	ENSGT00950000183005.b.b.a #24	ENSGT00940000155402.a.a.d
Goldfish	MODERN SPECIES	41	hmg20b (ENSCARG00000048390)	ENSCARG00000047047 #24	ssbp4 (ENSCARG00000038496)	fkbp8 (ENSCARG00000038126)	ell (ENSCARG00000037628)	DOT1L (ENSCARG00000034904) #8	oaz1a (ENSCARG00000034806)	org (ENSCARG00000034797)	lingo3a (ENSCARG00000034795)	nfil3-4 (ENSCARG00000034791)	ENSCARG00000034787 ##21	foxq2 (ENSCARG00000034784)	pias4a (ENSCARG00000034726)	map2k2a (ENSCARG00000034521)	ENSCARG00000034500	ENSCARG00000034489 #22	ENSCARG00000034482	ENSCARG00000034471	fgf22 (ENSCARG00000034453)	POLRMT (ENSCARG00000034214)	HCN2 (ENSCARG00000034062)	bsg (ENSCARG00000034046)	fstl3 (ENSCARG00000034005)	CBARP (ENSCARG00000033977)	atp5f1d (ENSCARG00000033950)	midn (ENSCARG00000033931)	cirbpb (ENSCARG00000033908)	ENSCARG00000044991	ENSCARG00000044919	ENSCARG00000044889	ENSCARG00000044837
Zebrafish	MODERN SPECIES	14	amh (ENSDARG00000014357)	ENSDARG00000092274	ENSDARG00000101128	oaz1a (ENSDARG00000071403)	ENSDARG00000094273	org (ENSDARG00000076474)	lingo3a (ENSDARG00000061970)	nfil3-4 (ENSDARG00000092346)	ENSDARG00000071398	ENSDARG00000042285 #20	ENSDARG00000056395 ##21	foxq2 (ENSDARG00000071394)	pias4a (ENSDARG00000007081)	map2k2a (ENSDARG00000006609)	ENSDARG00000039899	tcf3b (ENSDARG00000099999) #22	mbd3b (ENSDARG00000061810)	unc13a (ENSDARG00000061829)	hmg20b (ENSDARG00000042045)	btbd2a (ENSDARG00000042091) #13	eef2a.2 (ENSDARG00000042065)	eef2a.1 (ENSDARG00000042094)	creb3l3a (ENSDARG00000056226)	rxfp3.2b (ENSDARG00000061846)	celf5a (ENSDARG00000071375)	rgmd (ENSDARG00000034013)	hsd11b1la (ENSDARG00000071377)	micos13 (ENSDARG00000071378)	ENSDARG00000116690	ENSDARG00000117135	si:dkey-78l4.12 (ENSDARG00000095175)
Clupeiformes	ANCESTRAL SPECIES	9	ENSGT00440000033811	ENSGT00980000199199	ENSGT00390000003428	ENSGT00390000010172	ENSGT00940000157990.a.b	ENSGT00940000166379	ENSGT00940000160062.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00950000183103.d.b.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000157036.e.a #22	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00910000144271.A	ENSGT00910000144271.B.b	ENSGT00940000161721	ENSGT00390000008060
Denticle herring	MODERN SPECIES	4	cracd (ENSDCDG00000023487)	AASDH (ENSDCDG00000023475)	ENSDCDG00000023467	ppat (ENSDCDG00000023425)	paics (ENSDCDG00000023101)	ENSDCDG00000023086	nrl (ENSDCDG00000023077)	REM2 (ENSDCDG00000023076)	nfil3-4 (ENSDCDG00000023074)	ENSDCDG00000023072	ENSDCDG00000022714 #20	ENSDCDG00000022679 ##21	foxq2 (ENSDCDG00000022678)	pias4a (ENSDCDG00000022674)	map2k2a (ENSDCDG00000022451)	tcf3b (ENSDCDG00000022089) #22	ENSDCDG00000021970 #24	mbd3b (ENSDCDG00000021719)	ENSDCDG00000020439	hmg20b (ENSDCDG00000020396)	btbd2a (ENSDCDG00000020007) #13	rxfp3.2b (ENSDCDG00000019989)	celf5a (ENSDCDG00000019814)	rgmd (ENSDCDG00000019797)	hsd11b1la (ENSDCDG00000019795)	micos13 (ENSDCDG00000019793)	si:dkey-10o6.2 (ENSDCDG00000019790)	ENSDCDG00000019789	ENSDCDG00000019755	fgf22 (ENSDCDG00000019751)	POLRMT (ENSDCDG00000019428)
Euteleosteomorpha	ANCESTRAL SPECIES	64	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000157036.e.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Protacanthopterygii	ANCESTRAL SPECIES	13	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h #13	ENSGT00940000154662.d.l.a	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	55	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h #8	ENSGT00940000179866	ENSGT00940000159808.f.b	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b.b ##21	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b	ENSGT00940000153487.b.a.s.a.d	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c #22	ENSGT00970000193487	ENSGT00950000183005.b.b.d #24	ENSGT00940000161905.a
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h #8	ENSGT00940000179866.a	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a.d	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b.b ##21	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b	ENSGT00940000153487.b.a.s.a.d	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c #22	ENSGT00970000193487	ENSGT00950000183005.b.b.d #24	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b	ENSGT00940000159261.d.a.c	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000162487.t.b	ENSGT00390000002629.v	ENSGT00950000182925.C.a.b.f	ENSGT00940000162161.A.w
Oncorhynchus	ANCESTRAL SPECIES	51	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h #8	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a.d	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b.b ##21	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b	ENSGT00940000153487.b.a.s.a.d	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c #22	ENSGT00970000193487	ENSGT00950000183005.b.b.d #24	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b	ENSGT00940000159261.d.a.c	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc.f	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000162487.t.b	ENSGT00390000002629.v	ENSGT00950000182925.C.a.b.f	ENSGT00940000162161.A.w
Oncorhynchus_a	ANCESTRAL SPECIES	36	ENSGT00390000008279.b.d	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h #8	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b.b ##21	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b	ENSGT00940000153487.b.a.s.a.d	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c #22	ENSGT00950000183005.b.b.d #24	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b	ENSGT00940000159261.d.a.c	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc.f	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000162487.t.b	ENSGT00390000002629.v.a	ENSGT00950000182925.C.a.b.f	ENSGT00940000162161.A.w	ENSGT00910000144271.A
Coho salmon	MODERN SPECIES	1	ssbp4 (ENSOKIG00005022029)	fkbp8 (ENSOKIG00005022008)	ell (ENSOKIG00005021839)	DOT1L (ENSOKIG00005021608) #8	oaz1a (ENSOKIG00005021515)	ENSOKIG00005021501	lingo3a (ENSOKIG00005021495)	ENSOKIG00005021466	ENSOKIG00005021462	ENSOKIG00005021436 #20	ENSOKIG00005021427 ##21	foxq2 (ENSOKIG00005021422)	pias4a (ENSOKIG00005021351)	map2k2a (ENSOKIG00005021116)	ENSOKIG00005021093	tcf3b (ENSOKIG00005020656) #22	ENSOKIG00005020581 #24	ENSOKIG00005011326	hmg20b (ENSOKIG00005010920)	ENSOKIG00005010454	creb3l3a (ENSOKIG00005010435)	rxfp3.2b (ENSOKIG00005010430)	ENSOKIG00005010427	ENSOKIG00005010423	celf5a (ENSOKIG00005010397)	ENSOKIG00005010381	rgmd (ENSOKIG00005010373)	hsd11b1la (ENSOKIG00005010368)	micos13 (ENSOKIG00005010356)	ENSOKIG00005010349	ENSOKIG00005010339
Chinook salmon	MODERN SPECIES		FRMPD3 (ENSOTSG00005004588)	prps1b (ENSOTSG00005004571)	SLC25A53 (ENSOTSG00005004570)	tmsb1 (ENSOTSG00005004569)	zgc:66447 (ENSOTSG00005004567)	znf711 (ENSOTSG00005004563)	kctd12b (ENSOTSG00005004559)	lingo3a (ENSOTSG00005004558)	ENSOTSG00005004552 #20	ONECUT3 (ENSOTSG00005004550) ##21	foxq2 (ENSOTSG00005004549)	pias4a (ENSOTSG00005004547)	ENSOTSG00005004545	map2k2a (ENSOTSG00005004423)	ENSOTSG00005004422	tcf3b (ENSOTSG00005004420) #22	ENSOTSG00005004367 #24	ENSOTSG00005000404	hmg20b (ENSOTSG00005000355)	ENSOTSG00005000252	creb3l3a (ENSOTSG00005000251)	rxfp3.2b (ENSOTSG00005000250)	ENSOTSG00005000249	ENSOTSG00005000248	celf5a (ENSOTSG00005000247)	ENSOTSG00005000246	rgmd (ENSOTSG00005000245)	hsd11b1la (ENSOTSG00005000244)	micos13 (ENSOTSG00005000242)	ENSOTSG00005000241	ENSOTSG00005000240
Rainbow trout	MODERN SPECIES	22	oaz1a (ENSOMYG00000024421)	ENSOMYG00000064019	lingo3a (ENSOMYG00000024403)	nfil3-4 (ENSOMYG00000024396)	ENSOMYG00000049165	ENSOMYG00000024393	ENSOMYG00000073292	ENSOMYG00000052507	ENSOMYG00000024373 #20	ENSOMYG00000024360 ##21	foxq2 (ENSOMYG00000024358)	pias4a (ENSOMYG00000024328)	ENSOMYG00000024289	tmek (ENSOMYG00000024021)	ENSOMYG00000023916	tcf3b (ENSOMYG00000023660) #22	ENSOMYG00000023451	ENSOMYG00000023322 #24	ENSOMYG00000017997	hmg20b (ENSOMYG00000017672)	ENSOMYG00000016922	creb3l3a (ENSOMYG00000016863)	rxfp3.2b (ENSOMYG00000066614)	ENSOMYG00000076062	celf5a (ENSOMYG00000057546)	ENSOMYG00000016771	rgmd (ENSOMYG00000016763)	hsd11b1la (ENSOMYG00000016728)	micos13 (ENSOMYG00000016755)	ENSOMYG00000060310	ENSOMYG00000058826
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h #8	ENSGT00940000179866.a	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a.d	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b.b ##21	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b	ENSGT00940000153487.b.a.s.a.d	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c #22	ENSGT01100000264042	ENSGT00950000183005.b.b.d #24	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b	ENSGT00940000159261.d.a.c	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000177291	ENSGT00940000162487.t.b	ENSGT00390000002629.v	ENSGT00950000182925.C.a.b.f	ENSGT00940000162161.A.w
Atlantic salmon	MODERN SPECIES	15	ssbp4 (ENSSSAG00000009016)	ENSSSAG00000108322	ell (ENSSSAG00000009143)	ENSSSAG00000009382 #8	oaz1s (ENSSSAG00000009700)	ENSSSAG00000009718	ENSSSAG00000009764 #20	lingo3a (ENSSSAG00000110799)	ENSSSAG00000082536	ENSSSAG00000112330	ENSSSAG00000101819	ENSSSAG00000009895 ##21	ENSSSAG00000009906	foxq2 (ENSSSAG00000009926)	mp2k2 (ENSSSAG00000009933)	tcf3b (ENSSSAG00000010042) #22	ENSSSAG00000094304	ENSSSAG00000105808 #24	ENSSSAG00000010477	hmg20b (ENSSSAG00000017779)	ef2 (ENSSSAG00000017975)	creb3l3a (ENSSSAG00000018991)	celf5a (ENSSSAG00000019628)	rgmd (ENSSSAG00000020190)	ENSSSAG00000020311	hsd11b1la (ENSSSAG00000020651)	micos13 (ENSSSAG00000105399)	ENSSSAG00000025124	ENSSSAG00000025343	ENSSSAG00000025551	fgf22 (ENSSSAG00000117038)
River trout	MODERN SPECIES	33	ssbp4 (ENSSTUG00000005138)	fkbp8 (ENSSTUG00000005192)	ell (ENSSTUG00000005235)	ENSSTUG00000005243	DOT1L (ENSSTUG00000005256) #8	ENSSTUG00000005384	oaz1a (ENSSTUG00000005404)	lingo3a (ENSSTUG00000005411)	nfil3-4 (ENSSTUG00000005418)	ENSSTUG00000005431 #20	ENSSTUG00000005496 ##21	foxq2 (ENSSTUG00000005501)	pias4a (ENSSTUG00000005509)	map2k2a (ENSSTUG00000005571)	ENSSTUG00000005792	tcf3b (ENSSTUG00000005813) #22	ENSSTUG00000005992	ENSSTUG00000006003 #24	ENSSTUG00000006148	hmg20b (ENSSTUG00000008986)	ENSSTUG00000009034	creb3l3a (ENSSTUG00000009397)	rxfp3.2b (ENSSTUG00000009419)	ENSSTUG00000009422	celf5a (ENSSTUG00000009429)	rgmd (ENSSTUG00000009445)	ENSSTUG00000009450	hsd11b1la (ENSSTUG00000009458)	micos13 (ENSSTUG00000009464)	ENSSTUG00000009467	ENSSTUG00000009474
Huchen	MODERN SPECIES	2056										ENSHHUG00000002729 ##21	ENSHHUG00000002757	foxq2 (ENSHHUG00000002763)	pias4a (ENSHHUG00000002772)	map2k2a (ENSHHUG00000002801)	ENSHHUG00000003181	tcf3b (ENSHHUG00000003206) #22	ENSHHUG00000003358	ENSHHUG00000003376 #24	ENSHHUG00000003458	ENSHHUG00000003479	unc13a (ENSHHUG00000003518)
Salmoninae	ANCESTRAL SPECIES	11	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g #8	ENSGT00390000006337	ENSGT00940000159808.e	ENSGT00940000159808.f.a	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00950000183103.d.b.a.b.a ##21	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a	ENSGT00940000153487.b.a.s.a.c	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b.c #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h #13	ENSGT00940000154662.d.l.a.a	ENSGT00940000159261.d.a.d	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u	ENSGT00950000182925.C.a.b.e	ENSGT00940000162161.A.x
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g #8	ENSGT00390000006337	ENSGT00940000159808.f.a	ENSGT00610000087460	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.b.a ##21	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a	ENSGT00940000153487.b.a.s.a.c	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b.c #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h #13	ENSGT00940000154662.d.l.a.a	ENSGT00940000159261.d.a.d	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u	ENSGT00950000182925.C.a.b.e	ENSGT00940000162161.A.x
Salmo	ANCESTRAL SPECIES	14	ENSGT00390000008279.b.c	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g #8	ENSGT00390000006337	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.b.a ##21	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a	ENSGT00940000153487.b.a.s.a.c	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b.c #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h #13	ENSGT00940000154662.d.l.a.a	ENSGT00940000159261.d.a.d	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00990000213636	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u	ENSGT00950000182925.C.a.b.e
Atlantic salmon	MODERN SPECIES	1	tmem59l (ENSSSAG00000094749)	ssbp4 (ENSSSAG00000115956)	fkbp8 (ENSSSAG00000062933)	ell (ENSSSAG00000062878)	dot1l (ENSSSAG00000061712) #8	amh (ENSSSAG00000061537)	oaz1 (ENSSSAG00000061483)	org (ENSSSAG00000061454)	lingo3a (ENSSSAG00000120773)	nfil3-4 (ENSSSAG00000061418)	ENSSSAG00000061384 ##21	foxq2 (ENSSSAG00000061378)	pias4a (ENSSSAG00000060551)	map2k2a (ENSSSAG00000102037)	ENSSSAG00000105293	tcf3b (ENSSSAG00000060154) #22	ENSSSAG00000010231 #24	mbd3b (ENSSSAG00000034932)	ENSSSAG00000003488	ENSSSAG00000090012	hmg20b (ENSSSAG00000003006)	btbd2a (ENSSSAG00000002767) #13	ENSSSAG00000002699	creb3l3a (ENSSSAG00000002670)	rxfp3.2b (ENSSSAG00000019275)	ENSSSAG00000002655	celf5a (ENSSSAG00000002383)	rgmd (ENSSSAG00000064525)	hsd11b1la (ENSSSAG00000121503)	QIL1 (ENSSSAG00000064506)	ENSSSAG00000082290
River trout	MODERN SPECIES	14	ssbp4 (ENSSTUG00000031717)	fkbp8 (ENSSTUG00000031560)	ell (ENSSTUG00000031460)	DOT1L (ENSSTUG00000031330) #8	ENSSTUG00000031279	oaz1a (ENSSTUG00000031277)	ENSSTUG00000031273	org (ENSSTUG00000031263)	lingo3a (ENSSTUG00000031260)	ONECUT3 (ENSSTUG00000048688) ##21	foxq2 (ENSSTUG00000048684)	pias4a (ENSSTUG00000048663)	map2k2a (ENSSTUG00000048587)	ENSSTUG00000048578	ENSSTUG00000048574	tcf3b (ENSSTUG00000048478) #22	UQCR11 (ENSSTUG00000048458) #23	ENSSTUG00000048402 #24	mbd3b (ENSSTUG00000048309)	ENSSTUG00000045917	hmg20b (ENSSTUG00000045734)	btbd2a (ENSSTUG00000045648) #13	eef2b (ENSSTUG00000045526)	creb3l3a (ENSSTUG00000045505)	rxfp3.2b (ENSSTUG00000045500)	ENSSTUG00000045486	celf5a (ENSSTUG00000045372)	rgmd (ENSSTUG00000045354)	hsd11b1la (ENSSTUG00000045349)	micos13 (ENSSTUG00000045331)	ENSSTUG00000045323
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00390000008279.b.c	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g #8	ENSGT00390000006337	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.b.a ##21	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a	ENSGT00940000153487.b.a.s.a.c	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b.c #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h #13	ENSGT00940000154662.d.l.a.a	ENSGT00940000159261.d.a.d	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u	ENSGT00950000182925.C.a.b.e	ENSGT00940000162161.A.x
Rainbow trout	MODERN SPECIES	26	ssbp4 (ENSOMYG00000028010)	fkbp8 (ENSOMYG00000027698)	ell (ENSOMYG00000027667)	ENSOMYG00000027287 #8	amh (ENSOMYG00000027120)	oaz1a (ENSOMYG00000027112)	org (ENSOMYG00000027097)	lingo3a (ENSOMYG00000027063)	nfil3-4 (ENSOMYG00000027055)	ENSOMYG00000027045 ##21	foxq2 (ENSOMYG00000027035)	ENSOMYG00000069495	pias4a (ENSOMYG00000026996)	map2k2a (ENSOMYG00000026830)	ENSOMYG00000026747	tcf3b (ENSOMYG00000026566) #22	ENSOMYG00000026379 #23	ENSOMYG00000026298 #24	mbd3b (ENSOMYG00000025002)	ENSOMYG00000067858	ENSOMYG00000018017	hmg20b (ENSOMYG00000017483)	btbd2a (ENSOMYG00000017261) #13	ENSOMYG00000016947	ENSOMYG00000067523	creb3l3a (ENSOMYG00000016901)	rxfp3.2b (ENSOMYG00000016896)	celf5a (ENSOMYG00000016886)	ENSOMYG00000014600	rgmd (ENSOMYG00000016869)	hsd11b1la (ENSOMYG00000016844)
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g #8	ENSGT00390000006337	ENSGT00940000159808.f.a	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.a.b ##21	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a	ENSGT00940000153487.b.a.s.a.c	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b.c #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h #13	ENSGT00940000154662.d.l.a.a	ENSGT00940000159261.d.a.d	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u	ENSGT00950000182925.C.a.b.e	ENSGT00940000162161.A.x
Coho salmon	MODERN SPECIES	4	fkbp8 (ENSOKIG00005040657)	ell (ENSOKIG00005040869)	DOT1L (ENSOKIG00005041013) #8	amh (ENSOKIG00005041367)	ENSOKIG00005041381	oaz1a (ENSOKIG00005041388)	org (ENSOKIG00005041463)	lingo3a (ENSOKIG00005041488)	nfil3-4 (ENSOKIG00005041496)	ONECUT3 (ENSOKIG00005041534) ##21	foxq2 (ENSOKIG00005041552)	pias4a (ENSOKIG00005041570)	map2k2a (ENSOKIG00005041689)	ENSOKIG00005041909	ENSOKIG00005041921	tcf3b (ENSOKIG00005041972) #22	UQCR11 (ENSOKIG00005042395) #23	ENSOKIG00005042430 #24	mbd3b (ENSOKIG00005042554)	eef2b (ENSOKIG00005042682)	ENSOKIG00005043088	hmg20b (ENSOKIG00005045048)	btbd2a (ENSOKIG00005045078) #13	creb3l3a (ENSOKIG00005045180)	rxfp3.2b (ENSOKIG00005003851)	celf5a (ENSOKIG00005003859)	ENSOKIG00005003868	rgmd (ENSOKIG00005003870)	hsd11b1la (ENSOKIG00005003875)	micos13 (ENSOKIG00005003878)	ENSOKIG00005003891
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005041890	ENSOTSG00005041889	shc2 (ENSOTSG00005041888)	cks2 (ENSOTSG00005041887)	ENSOTSG00005041886	ENSOTSG00005041884	ENSOTSG00005041883	crlf1b (ENSOTSG00005041882)	tmem59l (ENSOTSG00005041881)	ENSOTSG00005041880	ENSOTSG00005041878 ##21	foxq2 (ENSOTSG00005041877)	pias4a (ENSOTSG00005041876)	map2k2a (ENSOTSG00005041842)	ENSOTSG00005041839	tcf3b (ENSOTSG00005041813) #22	UQCR11 (ENSOTSG00005041812) #23	ENSOTSG00005041801 #24	mbd3b (ENSOTSG00005032354)	ENSOTSG00005028127	hmg20b (ENSOTSG00005028095)	btbd2a (ENSOTSG00005027995) #13	eef2b (ENSOTSG00005027841)	creb3l3a (ENSOTSG00005027839)	rxfp3.2b (ENSOTSG00005027837)	ENSOTSG00005027836	celf5a (ENSOTSG00005027834)	rgmd (ENSOTSG00005027833)	hsd11b1la (ENSOTSG00005027832)	micos13 (ENSOTSG00005027831)	ENSOTSG00005027830
Huchen	MODERN SPECIES	64	ssbp4 (ENSHHUG00000042772)	fkbp8 (ENSHHUG00000042751)	ell (ENSHHUG00000042721)	DOT1L (ENSHHUG00000042663) #8	amh (ENSHHUG00000042652)	oaz1a (ENSHHUG00000042642)	ENSHHUG00000042639	org (ENSHHUG00000042630)	lingo3a (ENSHHUG00000042627)	ENSHHUG00000042624 #20	ONECUT3 (ENSHHUG00000042617) ##21	foxq2 (ENSHHUG00000042609)	pias4a (ENSHHUG00000042579)	map2k2a (ENSHHUG00000042167)	ENSHHUG00000042158	tcf3b (ENSHHUG00000042110) #22	UQCR11 (ENSHHUG00000042104) #23	ENSHHUG00000042074 #24	mbd3b (ENSHHUG00000041665)	ENSHHUG00000041423	hmg20b (ENSHHUG00000041407)	btbd2a (ENSHHUG00000041383) #13	eef2b (ENSHHUG00000041336)	creb3l3a (ENSHHUG00000041330)	rxfp3.2b (ENSHHUG00000041329)	celf5a (ENSHHUG00000041316)	rgmd (ENSHHUG00000041314)	hsd11b1la (ENSHHUG00000041313)	micos13 (ENSHHUG00000041311)	ENSHHUG00000041307	ENSHHUG00000041304
Northern pike	MODERN SPECIES	7	ssbp4 (ENSELUG00000017751)	fkbp8 (ENSELUG00000017800)	ell (ENSELUG00000017856)	DOT1L (ENSELUG00000017947) #8	amh (ENSELUG00000001523)	oaz1a (ENSELUG00000018009)	org (ENSELUG00000018048)	lingo3a (ENSELUG00000031632)	nfil3-4 (ENSELUG00000018073)	ENSELUG00000018163 #20	ONECUT3 (ENSELUG00000018173) ##21	foxq2 (ENSELUG00000000758)	pias4a (ENSELUG00000018209)	map2k2a (ENSELUG00000018291)	ENSELUG00000018331	tcf3b (ENSELUG00000000785) #22	UQCR11 (ENSELUG00000018436) #23	ENSELUG00000018490 #24	mbd3b (ENSELUG00000018581)	unc13a (ENSELUG00000018664)	hmg20b (ENSELUG00000018708)	btbd2a (ENSELUG00000018789) #13	eef2b (ENSELUG00000018859)	creb3l3a (ENSELUG00000018885)	rxfp3.2b (ENSELUG00000018897)	celf5a (ENSELUG00000018986)	rgmd (ENSELUG00000019027)	hsd11b1la (ENSELUG00000019096)	micos13 (ENSELUG00000025803)	SPIN1 (ENSELUG00000028391)	ENSELUG00000032063
Acanthomorphata	ANCESTRAL SPECIES	11	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000164119	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Tiger tail seahorse	MODERN SPECIES	469	ssbp4 (ENSHCOG00000001058)	fkbp8 (ENSHCOG00000001065)	ell (ENSHCOG00000001070)	DOT1L (ENSHCOG00000001086) #8	amh (ENSHCOG00000001199)	oaz1a (ENSHCOG00000001278)	org (ENSHCOG00000001285)	lingo3a (ENSHCOG00000001286)	ENSHCOG00000000737	ENSHCOG00000001314 #20	ONECUT3 (ENSHCOG00000001323) ##21	foxq2 (ENSHCOG00000001331)	pias4a (ENSHCOG00000001356)	map2k2a (ENSHCOG00000001372)	ENSHCOG00000001375	tcf3b (ENSHCOG00000001392) #22	ENSHCOG00000001404	ENSHCOG00000001410 #24	mbd3b (ENSHCOG00000001424)	ENSHCOG00000001450	hmg20b (ENSHCOG00000001458)	ENSHCOG00000001471	rxfp3.2b (ENSHCOG00000001481)	creb3l3a (ENSHCOG00000001490)	celf5a (ENSHCOG00000000056)	ENSHCOG00000001497	ENSHCOG00000001500	rgmd (ENSHCOG00000001504)	hsd11b1la (ENSHCOG00000001515)	micos13 (ENSHCOG00000001524)	ENSHCOG00000001533
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Seriola	ANCESTRAL SPECIES	21	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Yellowtail amberjack	MODERN SPECIES	2779	fkbp8 (ENSSLDG00000018302)	ell (ENSSLDG00000018316)	DOT1L (ENSSLDG00000018347) #8	amh (ENSSLDG00000018418)	oaz1a (ENSSLDG00000018586)	org (ENSSLDG00000018605)	lingo3a (ENSSLDG00000018623)	nfil3-4 (ENSSLDG00000018631)	ENSSLDG00000018644	ENSSLDG00000018664 #20	ONECUT3 (ENSSLDG00000018750) ##21	foxq2 (ENSSLDG00000018770)	pias4a (ENSSLDG00000018787)	map2k2a (ENSSLDG00000018873)	ENSSLDG00000018915	tcf3b (ENSSLDG00000018938) #22	ENSSLDG00000018966	ENSSLDG00000018975 #24	mbd3b (ENSSLDG00000019005)	unc13a (ENSSLDG00000019054)
Greater amberjack	MODERN SPECIES	111	ell (ENSSDUG00000005638)	DOT1L (ENSSDUG00000005561) #8	amh (ENSSDUG00000005520)	oaz1a (ENSSDUG00000005506)	ENSSDUG00000005495	org (ENSSDUG00000005482)	lingo3a (ENSSDUG00000005473)	nfil3-4 (ENSSDUG00000005467)	ENSSDUG00000005462	ENSSDUG00000005422 #20	ONECUT3 (ENSSDUG00000005407) ##21	foxq2 (ENSSDUG00000005395)	pias4a (ENSSDUG00000005380)	map2k2a (ENSSDUG00000005343)	ENSSDUG00000005329	tcf3b (ENSSDUG00000005302) #22	ENSSDUG00000005295	ENSSDUG00000005274 #24	ENSSDUG00000005249	unc13a (ENSSDUG00000005177)	hmg20b (ENSSDUG00000005156)	ENSSDUG00000005084	rxfp3.2b (ENSSDUG00000005071)	creb3l3a (ENSSDUG00000005006)	celf5a (ENSSDUG00000004977)	ENSSDUG00000004961	rgmd (ENSSDUG00000004947)	hsd11b1la (ENSSDUG00000004933)	micos13 (ENSSDUG00000004915)	ENSSDUG00000004904	ENSSDUG00000004875
Barramundi perch	MODERN SPECIES	221													pias4a (ENSLCAG00010006281)	map2k2a (ENSLCAG00010006202)	ENSLCAG00010006176	tcf3b (ENSLCAG00010006151) #22	ENSLCAG00010006142	ENSLCAG00010006101 #24	mbd3b (ENSLCAG00010004508)	unc13a (ENSLCAG00010003912)	hmg20b (ENSLCAG00010003798)	ENSLCAG00010003297	rxfp3.2b (ENSLCAG00010003191)	celf5a (ENSLCAG00010003144)	ENSLCAG00010003132	rgmd (ENSLCAG00010003131)	hsd11b1la (ENSLCAG00010003124)	micos13 (ENSLCAG00010003121)	ENSLCAG00010003119	ENSLCAG00010003058	ENSLCAG00010003052
Pleuronectoidei	ANCESTRAL SPECIES	29	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Tongue sole	MODERN SPECIES	11	tmem59l (ENSCSEG00000005608)	ssbp4 (ENSCSEG00000005625)	fkbp8 (ENSCSEG00000005642)	ell (ENSCSEG00000005649)	DOT1L (ENSCSEG00000005666) #8	amh (ENSCSEG00000005692)	oaz1a (ENSCSEG00000005700)	org (ENSCSEG00000005703)	lingo3a (ENSCSEG00000005708)	ENSCSEG00000005713 #20	nfil3-4 (ENSCSEG00000005727)	ENSCSEG00000005733 ##21	pias4a (ENSCSEG00000005736)	map2k2a (ENSCSEG00000005743)	ENSCSEG00000005752	tcf3b (ENSCSEG00000005762) #22	ENSCSEG00000005775 #24	ENSCSEG00000005781	yjefn3 (ENSCSEG00000005787)	gatad2ab (ENSCSEG00000005801)	MAU2 (ENSCSEG00000005813)	slc25a42 (ENSCSEG00000005845)	tmem161a (ENSCSEG00000005851)	ENSCSEG00000005870	borcs8 (ENSCSEG00000006744)	ENSCSEG00000006752	rfxank (ENSCSEG00000006758)	nr2c2ap (ENSCSEG00000006765)	NCAN (ENSCSEG00000006782)	hapln4 (ENSCSEG00000006835)	SBNO2 (ENSCSEG00000006856)
Turbot	MODERN SPECIES	3	ssbp4 (ENSSMAG00000010536)	fkbp8 (ENSSMAG00000010583)	ENSSMAG00000010716 #8	ENSSMAG00000010865	oaz1a (ENSSMAG00000036339)	ENSSMAG00000010955	org (ENSSMAG00000010979)	lingo3a (ENSSMAG00000010996)	nfil3-4 (ENSSMAG00000023493)	ENSSMAG00000011008 #20	ENSSMAG00000011032 ##21	foxq2 (ENSSMAG00000027229)	pias4a (ENSSMAG00000011051)	map2k2a (ENSSMAG00000011095)	ENSSMAG00000011133	tcf3b (ENSSMAG00000011141) #22	ENSSMAG00000011289	ENSSMAG00000011344 #24	mbd3b (ENSSMAG00000011414)	ENSSMAG00000011477	ENSSMAG00000011593	hmg20b (ENSSMAG00000011561)	ENSSMAG00000011623	ENSSMAG00000011634	celf5a (ENSSMAG00000011707)	rgmd (ENSSMAG00000011765)	hsd11b1la (ENSSMAG00000011781)	micos13 (ENSSMAG00000035702)	ENSSMAG00000033349	ENSSMAG00000011824	ENSSMAG00000011829
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808.g	ENSGT00990000206265	ENSGT00940000159808.h	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Zig-zag eel	MODERN SPECIES	18	ssbp4 (ENSMAMG00000019813)	fkbp8 (ENSMAMG00000019806)	ell (ENSMAMG00000019802)	DOT1L (ENSMAMG00000019781) #8	amh (ENSMAMG00000019772)	oaz1a (ENSMAMG00000019754)	org (ENSMAMG00000019749)	lingo3a (ENSMAMG00000019745)	ENSMAMG00000019742	ENSMAMG00000019708 #20	ENSMAMG00000019702 ##21	foxq2 (ENSMAMG00000019697)	pias4a (ENSMAMG00000019688)	map2k2a (ENSMAMG00000019669)	ENSMAMG00000019663	tcf3b (ENSMAMG00000019629) #22	ENSMAMG00000019605	ENSMAMG00000019593 #24	mbd3b (ENSMAMG00000019580)	ENSMAMG00000019532	hmg20b (ENSMAMG00000019523)	ENSMAMG00000019483	ENSMAMG00000019478	ENSMAMG00000019472	celf5a (ENSMAMG00000019440)	rgmd (ENSMAMG00000019430)	hsd11b1la (ENSMAMG00000019411)	micos13 (ENSMAMG00000019404)	ENSMAMG00000019384	ENSMAMG00000019379	ENSMAMG00000019373
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808.g	ENSGT00990000206265	ENSGT00940000159808.h	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Climbing perch	MODERN SPECIES	17	amh (ENSATEG00000025688)	ENSATEG00000000020	ENSATEG00000000602 #8	amh (ENSATEG00000027298)	ENSATEG00000025489	oaz1a (ENSATEG00000029408)	org (ENSATEG00000024225)	lingo3a (ENSATEG00000024223)	ENSATEG00000024219	ENSATEG00000024214 #20	ENSATEG00000024210 ##21	foxq2 (ENSATEG00000024209)	pias4a (ENSATEG00000024205)	map2k2a (ENSATEG00000024201)	ENSATEG00000024198	tcf3b (ENSATEG00000024190) #22	ENSATEG00000015593	ENSATEG00000024182 #24	mbd3b (ENSATEG00000024170)	unc13a (ENSATEG00000024156)	hmg20b (ENSATEG00000024149)	ENSATEG00000024140	ENSATEG00000024139	ENSATEG00000024136	celf5a (ENSATEG00000024133)	ENSATEG00000024132	rgmd (ENSATEG00000025956)	hsd11b1la (ENSATEG00000024125)	micos13 (ENSATEG00000024121)	ENSATEG00000027023	ENSATEG00000028698
Siamese fighting fish	MODERN SPECIES	15	fkbp8 (ENSBSLG00000020358)	ell (ENSBSLG00000020371)	DOT1L (ENSBSLG00000020487) #8	amh (ENSBSLG00000020545)	oaz1a (ENSBSLG00000000482)	org (ENSBSLG00000000508)	lingo3a (ENSBSLG00000000528)	nfil3-4 (ENSBSLG00000000543)	ENSBSLG00000000554	ENSBSLG00000000564 #20	ONECUT3 (ENSBSLG00000000585) ##21	foxq2 (ENSBSLG00000000594)	pias4a (ENSBSLG00000000614)	map2k2a (ENSBSLG00000000681)	ENSBSLG00000000752	tcf3b (ENSBSLG00000000772) #22	ENSBSLG00000000795 #24	mbd3b (ENSBSLG00000000820)	ENSBSLG00000000972	hmg20b (ENSBSLG00000001058)	ENSBSLG00000001069	rxfp3.2b (ENSBSLG00000001074)	creb3l3a (ENSBSLG00000001077)	celf5a (ENSBSLG00000001385)	rgmd (ENSBSLG00000001602)	ENSBSLG00000001604	hsd11b1la (ENSBSLG00000001619)	hsd11b1la (ENSBSLG00000001666)	hsd11b1la (ENSBSLG00000001798)	micos13 (ENSBSLG00000001847)	ENSBSLG00000001850
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Fugu	MODERN SPECIES	12	ssbp4 (ENSTRUG00000017822)	fkbp8 (ENSTRUG00000017825)	ell (ENSTRUG00000017827)	DOT1L (ENSTRUG00000017836) #8	amh (ENSTRUG00000017845)	oaz1 (ENSTRUG00000017848)	org (ENSTRUG00000021694)	lingo3a (ENSTRUG00000029689)	nfil3-4 (ENSTRUG00000024024)	ENSTRUG00000017852 #20	ONECUT3 (ENSTRUG00000017862) ##21	foxq2 (ENSTRUG00000019696)	pias4 (ENSTRUG00000017867)	map2k2a (ENSTRUG00000017876)	ENSTRUG00000017896	tcf3b (ENSTRUG00000017901) #22	ENSTRUG00000024626	ENSTRUG00000019805 #24	hmg20b (ENSTRUG00000023188)	eef2b (ENSTRUG00000017921)	rxfp3.2b (ENSTRUG00000017932)	creb3l3a (ENSTRUG00000017933)	ENSTRUG00000024401	celf5a (ENSTRUG00000017937)	ENSTRUG00000028383	rgmd (ENSTRUG00000017971)	hsd11b1la (ENSTRUG00000017980)	micos13 (ENSTRUG00000024935)	ENSTRUG00000030441	ENSTRUG00000017995	ENSTRUG00000025513
Tetraodon	MODERN SPECIES		tmem59l (ENSTNIG00000019440)	ssbp4 (ENSTNIG00000004007)	fkbp8 (ENSTNIG00000005610)	ell (ENSTNIG00000004352)	DOT1L (ENSTNIG00000004351) #8	ENSTNIG00000000746	oaz1a (ENSTNIG00000005649)	org (ENSTNIG00000005650)	lingo3a (ENSTNIG00000004974)	ENSTNIG00000004975	ENSTNIG00000004976 #20	ENSTNIG00000004331 ##21	pias4a (ENSTNIG00000003243)	map2k2a (ENSTNIG00000003242)	ENSTNIG00000004415	tcf3b (ENSTNIG00000004414) #22	ENSTNIG00000010626	ENSTNIG00000010627 #24	mbd3b (ENSTNIG00000010628)	ENSTNIG00000010629	hmg20b (ENSTNIG00000010630)	eef2b (ENSTNIG00000010631)	RXFP3 (ENSTNIG00000010632)	creb3l3a (ENSTNIG00000010633)	celf5a (ENSTNIG00000010634)	rgmd (ENSTNIG00000010635)	hsd11b1la (ENSTNIG00000010636)	micos13 (ENSTNIG00000010637)	ENSTNIG00000010638	ENSTNIG00000010639	ENSTNIG00000001557
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Ballan wrasse	MODERN SPECIES	45	ENSLBEG00000018587	DOT1L (ENSLBEG00000018459) #8	amh (ENSLBEG00000018391)	oaz1a (ENSLBEG00000018367)	ENSLBEG00000018346	org (ENSLBEG00000018328)	lingo3a (ENSLBEG00000018319)	nfil3-4 (ENSLBEG00000018305)	ENSLBEG00000018297	ENSLBEG00000018270 #20	ONECUT3 (ENSLBEG00000018257) ##21	foxq2 (ENSLBEG00000018243)	pias4a (ENSLBEG00000018229)	map2k2a (ENSLBEG00000018179)	ENSLBEG00000018148	tcf3b (ENSLBEG00000018121) #22	ENSLBEG00000018105	ENSLBEG00000018071 #24	ENSLBEG00000018021	ENSLBEG00000017985	unc13a (ENSLBEG00000017253)	hmg20b (ENSLBEG00000016997)	ENSLBEG00000016853	rxfp3.2b (ENSLBEG00000016833)	creb3l3a (ENSLBEG00000016806)	celf5a (ENSLBEG00000016733)	ENSLBEG00000016696	rgmd (ENSLBEG00000016677)	hsd11b1la (ENSLBEG00000016655)	micos13 (ENSLBEG00000016628)	ENSLBEG00000016606
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Large yellow croaker	MODERN SPECIES	489	fkbp8 (ENSLCRG00005000803)	ell (ENSLCRG00005020613)	DOT1L (ENSLCRG00005020600) #8	amh (ENSLCRG00005020594)	oaz1a (ENSLCRG00005020593)	org (ENSLCRG00005020591)	lingo3a (ENSLCRG00005020590)	nfil3-4 (ENSLCRG00005020589)	ENSLCRG00005020588	ENSLCRG00005020585 #20	ONECUT3 (ENSLCRG00005020583) ##21	foxq2 (ENSLCRG00005020582)	pias4a (ENSLCRG00005020574)	map2k2a (ENSLCRG00005020546)	ENSLCRG00005020543	tcf3b (ENSLCRG00005020537) #22	ENSLCRG00005020535	ENSLCRG00005020531 #24	mbd3b (ENSLCRG00005019959)	unc13a (ENSLCRG00005014451)	hmg20b (ENSLCRG00005014394)	hmg20b (ENSLCRG00005014392)	ENSLCRG00005014391	ENSLCRG00005014318	rxfp3.2b (ENSLCRG00005014316)	creb3l3a (ENSLCRG00005014315)	celf5a (ENSLCRG00005013906)	rgmd (ENSLCRG00005013898)	hsd11b1la (ENSLCRG00005013897)	micos13 (ENSLCRG00005013896)	ENSLCRG00005013895
European seabass	MODERN SPECIES	17	fkbp8 (ENSDLAG00005006935)	ell (ENSDLAG00005006945)	ENSDLAG00005007009 #8	ENSDLAG00005007127	oaz1a (ENSDLAG00005007152)	org (ENSDLAG00005032582)	lingo3a (ENSDLAG00005029798)	nfil3-4 (ENSDLAG00005034126)	ENSDLAG00005032586	ENSDLAG00005007203 #20	ENSDLAG00005007246 ##21	foxq2 (ENSDLAG00005007454)	pias4a (ENSDLAG00005007467)	map2k2a (ENSDLAG00005007532)	ENSDLAG00005027950	tcf3b (ENSDLAG00005007641) #22	ENSDLAG00005007902 #24	mbd3b (ENSDLAG00005008038)	ENSDLAG00005010545	hmg20b (ENSDLAG00005012176)	ENSDLAG00005007255	ENSDLAG00005012187	ENSDLAG00005012189	celf5a (ENSDLAG00005012223)	rgmd (ENSDLAG00005034969)	ENSDLAG00005013250	hsd11b1la (ENSDLAG00005033494)	micos13 (ENSDLAG00005030603)	ENSDLAG00005013319	fgf22 (ENSDLAG00005013336)	POLRMT (ENSDLAG00005013349)
Gilthead seabream	MODERN SPECIES	2	fkbp8 (ENSSAUG00010017158)	ell (ENSSAUG00010016910)	DOT1L (ENSSAUG00010016896) #8	amh (ENSSAUG00010016872)	oaz1a (ENSSAUG00010016869)	org (ENSSAUG00010016866)	lingo3a (ENSSAUG00010016865)	ENSSAUG00010016864	ENSSAUG00010016863	ENSSAUG00010016859 #20	ONECUT3 (ENSSAUG00010016857) ##21	foxq2 (ENSSAUG00010016856)	pias4a (ENSSAUG00010016853)	map2k2a (ENSSAUG00010016794)	ENSSAUG00010016791	tcf3b (ENSSAUG00010016777) #22	UQCR11-A (ENSSAUG00010016776)	ENSSAUG00010016761 #24	mbd3b (ENSSAUG00010014453)	ENSSAUG00010006800	hmg20b (ENSSAUG00010006681)	ENSSAUG00010006609	rxfp3.2b (ENSSAUG00010006596)	creb3l3a (ENSSAUG00010006590)	celf5a (ENSSAUG00010006236)	ENSSAUG00010006223	rgmd (ENSSAUG00010006219)	hsd11b1la (ENSSAUG00010006216)	micos13 (ENSSAUG00010006210)	ENSSAUG00010006206	ENSSAUG00010006198
Perciformes	ANCESTRAL SPECIES	8	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Lumpfish	MODERN SPECIES	19	ssbp4 (ENSCLMG00005016764)	fkbp8 (ENSCLMG00005016767)	ell (ENSCLMG00005016774)	DOT1L (ENSCLMG00005016800) #8	amh (ENSCLMG00005016820)	oaz1a (ENSCLMG00005016821)	org (ENSCLMG00005016822)	lingo3a (ENSCLMG00005016825)	ENSCLMG00005016826	ENSCLMG00005016827 #20	ONECUT3 (ENSCLMG00005016830) ##21	foxq2 (ENSCLMG00005016831)	pias4a (ENSCLMG00005016833)	map2k2a (ENSCLMG00005016837)	ENSCLMG00005016924	tcf3b (ENSCLMG00005016927) #22	ENSCLMG00005016989	ENSCLMG00005016993 #24	ENSCLMG00005017013	ENSCLMG00005017014	ENSCLMG00005017025	hmg20b (ENSCLMG00005000069)	ENSCLMG00005000167	rxfp3.2b (ENSCLMG00005000364)	creb3l3a (ENSCLMG00005000369)	ENSCLMG00005000371	rgmd (ENSCLMG00005000373)	ENSCLMG00005000374	hsd11b1la (ENSCLMG00005000375)	micos13 (ENSCLMG00005000377)	ENSCLMG00005000380
Stickleback	MODERN SPECIES	8	fkbp8 (ENSGACG00000012561)	ell (ENSGACG00000012588)	DOT1L (ENSGACG00000012616) #8	amh (ENSGACG00000012629)	ENSGACG00000012639	oaz1a (ENSGACG00000012643)	ENSGACG00000012649	org (ENSGACG00000012651)	lingo3a (ENSGACG00000012652)	ENSGACG00000012656	ENSGACG00000012658 #20	ONECUT3 (ENSGACG00000012671) ##21	pias4a (ENSGACG00000012681)	map2k2a (ENSGACG00000012686)	ENSGACG00000012730	tcf3b (ENSGACG00000012737) #22	ENSGACG00000012755 #24	mbd3b (ENSGACG00000012760)	hmg20b (ENSGACG00000012785)	ENSGACG00000012793	rxfp3.2b (ENSGACG00000012856)	creb3l3a (ENSGACG00000012860)	celf5a (ENSGACG00000012870)	rgmd (ENSGACG00000012876)	hsd11b1la (ENSGACG00000012884)	ENSGACG00000012902	ENSGACG00000012927	ENSGACG00000012935	ENSGACG00000012948	ENSGACG00000012951	POLRMT (ENSGACG00000012957)
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Pike perch	MODERN SPECIES	34	ssbp4 (ENSSLUG00000012627)	fkbp8 (ENSSLUG00000012664)	ell (ENSSLUG00000012675)	DOT1L (ENSSLUG00000012762) #8	amh (ENSSLUG00000012781)	oaz1a (ENSSLUG00000012785)	org (ENSSLUG00000012790)	lingo3a (ENSSLUG00000012793)	ENSSLUG00000012796	ENSSLUG00000012797 #20	ONECUT3 (ENSSLUG00000012802) ##21	foxq2 (ENSSLUG00000012804)	pias4a (ENSSLUG00000012813)	map2k2a (ENSSLUG00000012846)	ENSSLUG00000013000	tcf3b (ENSSLUG00000013013) #22	ENSSLUG00000013074	ENSSLUG00000013084 #24	mbd3b (ENSSLUG00000013102)	ENSSLUG00000013172	hmg20b (ENSSLUG00000013466)	ENSSLUG00000013485	rxfp3.2b (ENSSLUG00000013548)	creb3l3a (ENSSLUG00000013552)	celf5a (ENSSLUG00000013580)	rgmd (ENSSLUG00000014319)	hsd11b1la (ENSSLUG00000014330)	micos13 (ENSSLUG00000014338)	ENSSLUG00000014341	ENSSLUG00000014348	ENSSLUG00000014352
Channel bull blenny	MODERN SPECIES	18	ell (ENSCGOG00000009470)	DOT1L (ENSCGOG00000008368) #8	amh (ENSCGOG00000008344)	oaz1a (ENSCGOG00000008337)	ENSCGOG00000008332	org (ENSCGOG00000008327)	lingo3a (ENSCGOG00000008324)	nfil3-4 (ENSCGOG00000008321)	ENSCGOG00000008319	ENSCGOG00000008285	ONECUT3 (ENSCGOG00000008282) ##21	foxq2 (ENSCGOG00000008279)	pias4a (ENSCGOG00000008268)	map2k2a (ENSCGOG00000007606)	ENSCGOG00000007572	tcf3b (ENSCGOG00000007482) #22	ENSCGOG00000007477	ENSCGOG00000007471 #24	mbd3b (ENSCGOG00000007465)	ENSCGOG00000004133	hmg20b (ENSCGOG00000004009)	ENSCGOG00000003282	rxfp3.2b (ENSCGOG00000003232)	creb3l3a (ENSCGOG00000003219)	celf5a (ENSCGOG00000003127)	ENSCGOG00000003124	rgmd (ENSCGOG00000003121)	hsd11b1la (ENSCGOG00000003118)	micos13 (ENSCGOG00000003115)	ENSCGOG00000003110	ENSCGOG00000003073
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Pomacentridae	ANCESTRAL SPECIES	14	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A	ENSGT00910000144271.A.c.b.a.a
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629.z	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A	ENSGT00910000144271.A.c.b.a.a
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629.z	ENSGT00950000182925.C.a.b.c	ENSGT00940000162161.A.r	ENSGT00940000162161.A.q
Orange clownfish	MODERN SPECIES	11	fkbp8 (ENSAPEG00000006577)	ell (ENSAPEG00000006602)	DOT1L (ENSAPEG00000006653) #8	amh (ENSAPEG00000006669)	oaz1a (ENSAPEG00000006728)	ENSAPEG00000006750	org (ENSAPEG00000006781)	lingo3a (ENSAPEG00000006790)	nfil3-4 (ENSAPEG00000006796)	ENSAPEG00000006835 #20	ONECUT3 (ENSAPEG00000006901) ##21	foxq2 (ENSAPEG00000006924)	pias4a (ENSAPEG00000006954)	map2k2a (ENSAPEG00000006964)	ENSAPEG00000007009	tcf3b (ENSAPEG00000007026) #22	ENSAPEG00000007122	ENSAPEG00000007136 #24	mbd3b (ENSAPEG00000007189)	ENSAPEG00000007320	hmg20b (ENSAPEG00000007422)	ENSAPEG00000007459	rxfp3.2b (ENSAPEG00000007584)	creb3l3a (ENSAPEG00000007603)	celf5a (ENSAPEG00000007649)	rgmd (ENSAPEG00000007684)	hsd11b1la (ENSAPEG00000007702)	micos13 (ENSAPEG00000007730)	ENSAPEG00000007747	ENSAPEG00000007753	ENSAPEG00000007806
Clown anemonefish	MODERN SPECIES	117												foxq2 (ENSAOCG00000010063)	pias4a (ENSAOCG00000010044)	map2k2a (ENSAOCG00000009993)	ENSAOCG00000009965	tcf3b (ENSAOCG00000009939) #22	ENSAOCG00000009851	ENSAOCG00000009832 #24	ENSAOCG00000009812	ADAMTS14 (ENSAOCG00000009741)	pald1a (ENSAOCG00000002629)	ndr2 (ENSAOCG00000009389)	lrrc20 (ENSAOCG00000009373)	ppa1a (ENSAOCG00000009351)	ENSAOCG00000002627	SPOCK2 (ENSAOCG00000009062)	ascc1 (ENSAOCG00000009038)	anapc16 (ENSAOCG00000009025)	ddit4 (ENSAOCG00000009009)	dnajb12b (ENSAOCG00000008994)	scd (ENSAOCG00000008963)
Spiny chromis	MODERN SPECIES	7								lingo3a (ENSAPOG00000000130)	nfil3-4 (ENSAPOG00000005508)	ENSAPOG00000005485 #20	ONECUT3 (ENSAPOG00000005380) ##21	foxq2 (ENSAPOG00000005362)	pias4a (ENSAPOG00000005333)	map2k2a (ENSAPOG00000005281)	ENSAPOG00000005240	tcf3b (ENSAPOG00000005217) #22	ENSAPOG00000005082	ENSAPOG00000005056 #24	ENSAPOG00000004999	ENSAPOG00000004888	hmg20b (ENSAPOG00000004588)	ENSAPOG00000004529	rxfp3.2b (ENSAPOG00000000932)	creb3l3a (ENSAPOG00000004457)	celf5a (ENSAPOG00000004445)	rgmd (ENSAPOG00000000107)	hsd11b1la (ENSAPOG00000004387)	micos13 (ENSAPOG00000004377)	ENSAPOG00000004360	ENSAPOG00000004341	ENSAPOG00000004331
Bicolor damselfish	MODERN SPECIES	335	fkbp8 (ENSSPAG00000016420)	ell (ENSSPAG00000016395)	DOT1L (ENSSPAG00000016344) #8	amh (ENSSPAG00000016324)	oaz1a (ENSSPAG00000016278)	ENSSPAG00000016262	org (ENSSPAG00000016251)	lingo3a (ENSSPAG00000016247)	nfil3-4 (ENSSPAG00000016243)	ENSSPAG00000016013 #20	ENSSPAG00000015973 ##21	foxq2 (ENSSPAG00000015959)	pias4a (ENSSPAG00000015929)	map2k2a (ENSSPAG00000015879)	ENSSPAG00000015863	tcf3b (ENSSPAG00000015836) #22	ENSSPAG00000015799	ENSSPAG00000015752 #24	ENSSPAG00000015723
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487.d	ENSGT00940000162487.c
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.d	ENSGT00940000162487.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.d	ENSGT00940000162487.c
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160540.r	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.d	ENSGT00940000162487.c	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Burton s mouthbrooder	MODERN SPECIES	414	fkbp8 (ENSHBUG00000005368)	ell (ENSHBUG00000005404)	DOT1L (ENSHBUG00000005459) #8	amh (ENSHBUG00000005741)	oaz1a (ENSHBUG00000005775)	ENSHBUG00000005785	org (ENSHBUG00000005831)	lingo3a (ENSHBUG00000005836)	ENSHBUG00000005843	ENSHBUG00000005864 #20	ONECUT3 (ENSHBUG00000005882) ##21	foxq2 (ENSHBUG00000005900)	pias4a (ENSHBUG00000005916)	map2k2a (ENSHBUG00000005943)	ENSHBUG00000005975	tcf3b (ENSHBUG00000006086) #22	ENSHBUG00000006113	ENSHBUG00000006135 #24	mbd3b (ENSHBUG00000006202)	ENSHBUG00000006283	hmg20b (ENSHBUG00000006326)	ENSHBUG00000006381	rxfp3.2b (ENSHBUG00000006403)	creb3l3a (ENSHBUG00000006417)	celf5a (ENSHBUG00000006465)	ENSHBUG00000006483	rgmd (ENSHBUG00000006497)	hsd11b1la (ENSHBUG00000006510)	hsd11b1la (ENSHBUG00000006516)	micos13 (ENSHBUG00000006529)	ENSHBUG00000006547
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160540.r	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487.d	ENSGT00940000162487.c	ENSGT00390000002629	ENSGT00950000182925.C.a.b
P. nyererei	MODERN SPECIES	318	fkbp8 (ENSPNYG00000016388)	ell (ENSPNYG00000016397)	DOT1L (ENSPNYG00000016428) #8	amh (ENSPNYG00000016478)	oaz1a (ENSPNYG00000016687)	ENSPNYG00000016713	org (ENSPNYG00000016726)	lingo3a (ENSPNYG00000016742)	ENSPNYG00000016748	ENSPNYG00000016775	ONECUT3 (ENSPNYG00000016953) ##21	foxq2 (ENSPNYG00000016965)	pias4a (ENSPNYG00000016983)	map2k2a (ENSPNYG00000017002)	ENSPNYG00000017042	tcf3b (ENSPNYG00000017087) #22	ENSPNYG00000017184	ENSPNYG00000017202 #24	mbd3b (ENSPNYG00000017231)	ENSPNYG00000017302	hmg20b (ENSPNYG00000017379)	ENSPNYG00000017403	ENSPNYG00000017458	rxfp3.2b (ENSPNYG00000017467)	creb3l3a (ENSPNYG00000017473)	celf5a (ENSPNYG00000017486)	rgmd (ENSPNYG00000017517)	hsd11b1la (ENSPNYG00000017533)	hsd11b1la (ENSPNYG00000017539)	micos13 (ENSPNYG00000017550)	ENSPNYG00000017558
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160540.r	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487.d	ENSGT00940000162487.c	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Eastern happy	MODERN SPECIES	14	ENSACLG00000022926	amh (ENSACLG00000022957)	oaz1a (ENSACLG00000022979)	ENSACLG00000023004	org (ENSACLG00000023013)	lingo3a (ENSACLG00000023021)	ENSACLG00000023025	ENSACLG00000023029	ENSACLG00000023041 #20	ONECUT3 (ENSACLG00000023114) ##21	foxq2 (ENSACLG00000023125)	pias4a (ENSACLG00000023132)	map2k2a (ENSACLG00000023158)	ENSACLG00000023202	ENSACLG00000023207	tcf3b (ENSACLG00000023293) #22	ENSACLG00000023377	ENSACLG00000023390 #24	mbd3b (ENSACLG00000023424)	ENSACLG00000023469	hmg20b (ENSACLG00000023559)	ENSACLG00000023595	rxfp3.2b (ENSACLG00000023659)	creb3l3a (ENSACLG00000023666)	celf5a (ENSACLG00000023709)	rgmd (ENSACLG00000023733)	ENSACLG00000023746	hsd11b1la (ENSACLG00000023762)	hsd11b1la (ENSACLG00000023777)	micos13 (ENSACLG00000023787)	ENSACLG00000023799
Zebra mbuna	MODERN SPECIES	1105	ell (ENSMZEG00005006297)	DOT1L (ENSMZEG00005006342) #8	amh (ENSMZEG00005006452)	oaz1a (ENSMZEG00005006485)	ENSMZEG00005006499	org (ENSMZEG00005006509)	lingo3a (ENSMZEG00005006520)	ENSMZEG00005006529	ENSMZEG00005006536	ENSMZEG00005006546 #20	ONECUT3 (ENSMZEG00005006683) ##21	foxq2 (ENSMZEG00005006698)	pias4a (ENSMZEG00005006709)	map2k2a (ENSMZEG00005006735)	ENSMZEG00005006774	tcf3b (ENSMZEG00005006785) #22	ENSMZEG00005006851	ENSMZEG00005006883 #24	mbd3b (ENSMZEG00005006928)	unc13a (ENSMZEG00005007011)	hmg20b (ENSMZEG00005007077)	ENSMZEG00005007103	rxfp3.2b (ENSMZEG00005007174)	creb3l3a (ENSMZEG00005007188)	celf5a (ENSMZEG00005007211)	rgmd (ENSMZEG00005007252)	ENSMZEG00005007268	hsd11b1la (ENSMZEG00005007291)	hsd11b1la (ENSMZEG00005007301)	micos13 (ENSMZEG00005007321)	ENSMZEG00005007324
Lyretail cichlid	MODERN SPECIES	307	fkbp8 (ENSNBRG00000010580)	ell (ENSNBRG00000010592)	DOT1L (ENSNBRG00000010613) #8	ENSNBRG00000010673	oaz1a (ENSNBRG00000010696)	ENSNBRG00000010717	org (ENSNBRG00000010726)	ENSNBRG00000010747	ENSNBRG00000010781	ENSNBRG00000010791 #20	ONECUT3 (ENSNBRG00000010842) ##21	foxq2 (ENSNBRG00000010887)	pias4a (ENSNBRG00000010912)	map2k2a (ENSNBRG00000010940)	ENSNBRG00000010965	tcf3b (ENSNBRG00000010986) #22	ENSNBRG00000011046	ENSNBRG00000011072 #24	mbd3b (ENSNBRG00000011105)	ENSNBRG00000011180	ENSNBRG00000011229	hmg20b (ENSNBRG00000011281)	ENSNBRG00000011329	ENSNBRG00000011384	creb3l3a (ENSNBRG00000011400)	celf5a (ENSNBRG00000011418)	rgmd (ENSNBRG00000011449)	hsd11b1la (ENSNBRG00000011473)	hsd11b1la (ENSNBRG00000011488)	micos13 (ENSNBRG00000011498)	ENSNBRG00000011512
Nile tilapia	MODERN SPECIES	14	fkbp8 (ENSONIG00000004766)	ell (ENSONIG00000004771)	amh (ENSONIG00000004781)	DOT1L (ENSONIG00000004774) #8	ENSONIG00000004783	org (ENSONIG00000004784)	lingo3a (ENSONIG00000021358)	ENSONIG00000021359	ENSONIG00000039980	ENSONIG00000004785 #20	ONECUT3 (ENSONIG00000004792) ##21	foxq2 (ENSONIG00000004794)	pias4a (ENSONIG00000004799)	map2k2a (ENSONIG00000004812)	ENSONIG00000004814	tcf3b (ENSONIG00000004816) #22	ENSONIG00000031773	ENSONIG00000038561 #24	mbd3b (ENSONIG00000004825)	unc13a (ENSONIG00000004832)	hmg20b (ENSONIG00000004838)	ENSONIG00000004840	rxfp3.2b (ENSONIG00000021360)	creb3l3a (ENSONIG00000004846)	celf5a (ENSONIG00000004856)	rgmd (ENSONIG00000004867)	ENSONIG00000027594	hsd11b1la (ENSONIG00000004868)	hsd11b1la (ENSONIG00000004870)	micos13 (ENSONIG00000034308)	ENSONIG00000039748
Midas cichlid	MODERN SPECIES	551	fkbp8 (ENSACIG00000014150)	ell (ENSACIG00000014191)	DOT1L (ENSACIG00000014278) #8	amh (ENSACIG00000014349)	oaz1a (ENSACIG00000014543)	ENSACIG00000014555	org (ENSACIG00000014565)	lingo3a (ENSACIG00000014576)	nfil3-4 (ENSACIG00000014578)	ENSACIG00000014591 #20	ONECUT3 (ENSACIG00000014671) ##21	foxq2 (ENSACIG00000014682)	pias4a (ENSACIG00000014704)	map2k2a (ENSACIG00000014846)	ENSACIG00000014863	tcf3b (ENSACIG00000014872) #22	ENSACIG00000014920	ENSACIG00000014984 #24	ENSACIG00000015104	ENSACIG00000015136	hmg20b (ENSACIG00000015213)	ENSACIG00000015246	rxfp3.2b (ENSACIG00000015291)	creb3l3a (ENSACIG00000015303)	celf5a (ENSACIG00000015357)	rgmd (ENSACIG00000015383)	ENSACIG00000015404	hsd11b1la (ENSACIG00000015417)	hsd11b1la (ENSACIG00000015431)	micos13 (ENSACIG00000015450)	ENSACIG00000015517
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Oryzias	ANCESTRAL SPECIES	5	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A	ENSGT00910000144271.A.c.b.a.a.c.b
Oryzias_b	ANCESTRAL SPECIES	15			ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000157036.e.a #22	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162487	ENSGT00940000162161.A	ENSGT00910000144271.A.c.b.a.a.c.a.a
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES		slc4a11 (ENSOMEG00000004833)	ENSOMEG00000004858	ENSOMEG00000004869	ENSOMEG00000004883	ENSOMEG00000004893	ENSOMEG00000004897	ATRN (ENSOMEG00000004949)	gfra4a (ENSOMEG00000004974)	ap5s1 (ENSOMEG00000004985)	esr2b (ENSOMEG00000005049)	ENSOMEG00000005140	ENSOMEG00000005166	gphb5 (ENSOMEG00000005179)	KCNH5 (ENSOMEG00000005202)	ENSOMEG00000005215 #22	tcf3b (ENSOMEG00000005223) #22	ENSOMEG00000005272 #24	ENSOMEG00000000988	mbd3b (ENSOMEG00000005323)	ENSOMEG00000005337	ENSOMEG00000005356	nubpl (ENSOMEG00000005404)	ENSOMEG00000005417	ARHGAP5 (ENSOMEG00000005441)	AKAP6 (ENSOMEG00000005617)	ENSOMEG00000005671	NPAS3 (ENSOMEG00000005794)	egln3 (ENSOMEG00000005866)	dtd2 (ENSOMEG00000005881)	ENSOMEG00000005901	ENSOMEG00000005921
Indian medaka	MODERN SPECIES		rpia (ENSOMEG00000004773)	slc4a11 (ENSOMEG00000004833)	ENSOMEG00000004858	ENSOMEG00000004869	ENSOMEG00000004883	ENSOMEG00000004893	ENSOMEG00000004897	ATRN (ENSOMEG00000004949)	gfra4a (ENSOMEG00000004974)	ap5s1 (ENSOMEG00000004985)	esr2b (ENSOMEG00000005049)	ENSOMEG00000005140	ENSOMEG00000005166	gphb5 (ENSOMEG00000005179)	KCNH5 (ENSOMEG00000005202)	ENSOMEG00000005215 #22	tcf3b (ENSOMEG00000005223) #22	ENSOMEG00000005272 #24	ENSOMEG00000000988	mbd3b (ENSOMEG00000005323)	ENSOMEG00000005337	ENSOMEG00000005356	nubpl (ENSOMEG00000005404)	ENSOMEG00000005417	ARHGAP5 (ENSOMEG00000005441)	AKAP6 (ENSOMEG00000005617)	ENSOMEG00000005671	NPAS3 (ENSOMEG00000005794)	egln3 (ENSOMEG00000005866)	dtd2 (ENSOMEG00000005881)	ENSOMEG00000005901
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.j	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162487.i	ENSGT00940000162161.A
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	704					ENSOSIG00000007367	DOT1L (ENSOSIG00000007376) #8	amh (ENSOSIG00000008970)	lingo3a (ENSOSIG00000009340)	ENSOSIG00000009341	ENSOSIG00000009342 #20	ONECUT3 (ENSOSIG00000009343) ##21	pias4a (ENSOSIG00000009344)	map2k2a (ENSOSIG00000009348)	ENSOSIG00000009601	ENSOSIG00000009602 #22	tcf3b (ENSOSIG00000009603) #22	UQCR11 (ENSOSIG00000009604) #23	ENSOSIG00000009605 #24	mbd3b (ENSOSIG00000009626)	hmg20b (ENSOSIG00000009948)	ENSOSIG00000009949
Chinese medaka	MODERN SPECIES	704						ENSOSIG00000007367	DOT1L (ENSOSIG00000007376) #8	amh (ENSOSIG00000008970)	lingo3a (ENSOSIG00000009340)	ENSOSIG00000009341	ENSOSIG00000009342 #20	ONECUT3 (ENSOSIG00000009343) ##21	pias4a (ENSOSIG00000009344)	map2k2a (ENSOSIG00000009348)	ENSOSIG00000009601	ENSOSIG00000009602 #22	tcf3b (ENSOSIG00000009603) #22	UQCR11 (ENSOSIG00000009604) #23	ENSOSIG00000009605 #24	mbd3b (ENSOSIG00000009626)	hmg20b (ENSOSIG00000009948)	ENSOSIG00000009949
Japanese Medaka HdrR	MODERN SPECIES	18	ssbp4 (ENSORLG00000005123)	fkbp8 (ENSORLG00000005099)	ell (ENSORLG00000005084)	DOT1L (ENSORLG00000005068) #8	amh (ENSORLG00000005044)	oaz1a (ENSORLG00000005036)	org (ENSORLG00000025930)	lingo3a (ENSORLG00000005032)	ENSORLG00000030341	ENSORLG00000005022 #20	ONECUT3 (ENSORLG00000004983) ##21	foxq2 (ENSORLG00000004973)	pias4a (ENSORLG00000004970)	map2k2a (ENSORLG00000004940)	ENSORLG00000028662	tcf3b (ENSORLG00000004923) #22	ENSORLG00000027720 #23	ENSORLG00000026605	ENSORLG00000004850 #24	ENSORLG00000030395	mbd3b (ENSORLG00000004814)	ENSORLG00000004741	hmg20b (ENSORLG00000004640)	ENSORLG00000004622	rxfp3.2b (ENSORLG00000028731)	creb3l3a (ENSORLG00000004610)	celf5a (ENSORLG00000004600)	ENSORLG00000028796	rgmd (ENSORLG00000004588)	hsd11b1la (ENSORLG00000004562)	micos13 (ENSORLG00000027818)
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A	ENSGT00910000144271.A.c.b.a.a.a
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT01100000264042	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A	ENSGT00910000144271.A.c.b.a.a.b.a
Mangrove rivulus	MODERN SPECIES	8	fkbp8 (ENSKMAG00000002964)	ell (ENSKMAG00000002974)	DOT1L (ENSKMAG00000002991) #8	amh (ENSKMAG00000003028)	oaz1a (ENSKMAG00000003091)	ENSKMAG00000003113	org (ENSKMAG00000003127)	lingo3a (ENSKMAG00000003141)	nfil3-4 (ENSKMAG00000003148)	ENSKMAG00000003171	ONECUT3 (ENSKMAG00000003238) ##21	foxq2 (ENSKMAG00000003247)	pias4a (ENSKMAG00000003261)	map2k2a (ENSKMAG00000003286)	ENSKMAG00000003340	tcf3b (ENSKMAG00000003368) #22	ENSKMAG00000003388 #24	mbd3b (ENSKMAG00000003439)	unc13a (ENSKMAG00000003541)	hmg20b (ENSKMAG00000003630)	ENSKMAG00000003647	rxfp3.2b (ENSKMAG00000003712)	creb3l3a (ENSKMAG00000003719)	celf5a (ENSKMAG00000003744)	rgmd (ENSKMAG00000003809)	hsd11b1la (ENSKMAG00000003827)	hsd11b1la (ENSKMAG00000003841)	micos13 (ENSKMAG00000003874)	ENSKMAG00000003857	ENSKMAG00000003901	ENSKMAG00000003926
Turquoise killifish	MODERN SPECIES	1626	FAM78B (ENSNFUG00015019110)	ENSNFUG00015019112	C22H19ORF60 (ENSNFUG00015019118)	crlf1b (ENSNFUG00015019127)	TMEM59L (ENSNFUG00015019145)	ENSNFUG00015019152	ssbp4 (ENSNFUG00015019157)	FKBP8 (ENSNFUG00015019178)	ELL (ENSNFUG00015019193)	ATP8B3 (ENSNFUG00015019212) #20	ONECUT3 (ENSNFUG00015019230) ##21	foxq2 (ENSNFUG00015019237)	PIAS4A (ENSNFUG00015019242)	map2k2a (ENSNFUG00015019263)	ENSNFUG00015019585	tcf3b (ENSNFUG00015019599) #22	Nfu_g_1_016071 (ENSNFUG00015019731)	ENSNFUG00015019742 #24	mbd3b (ENSNFUG00015019783)	ENSNFUG00015020116	HMG20B (ENSNFUG00015023480)	EEF2 (ENSNFUG00015023495)	celf5a (ENSNFUG00015023550)	rgmd (ENSNFUG00015023556)	HSD11B1L (ENSNFUG00015023562)	C22H19ORF70 (ENSNFUG00015023564)	SPINB (ENSNFUG00015023568)	ENSNFUG00015023573	ENSNFUG00015023576	ENSNFUG00015023581	fgf22 (ENSNFUG00015023589)
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Poecilia	ANCESTRAL SPECIES	1	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
NAME_6	ANCESTRAL SPECIES	97								ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00970000193487	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A
Amazon molly	MODERN SPECIES	487								lingo3a (ENSPFOG00000020083)	ENSPFOG00000020084	ENSPFOG00000000787 #20	ONECUT3 (ENSPFOG00000001415) ##21	foxq2 (ENSPFOG00000001440)	pias4a (ENSPFOG00000001507)	map2k2a (ENSPFOG00000001671)	ENSPFOG00000001889	tcf3b (ENSPFOG00000001904) #22	ENSPFOG00000001910 #24	mbd3b (ENSPFOG00000001993)	ENSPFOG00000002262	hmg20b (ENSPFOG00000003017)	ENSPFOG00000003083	rxfp3.2b (ENSPFOG00000020085)	creb3l3a (ENSPFOG00000003238)	celf5a (ENSPFOG00000003329)	rgmd (ENSPFOG00000003463)	hsd11b1la (ENSPFOG00000003482)	hsd11b1la (ENSPFOG00000022752)	hsd11b1la (ENSPFOG00000003516)	micos13 (ENSPFOG00000003587)	ENSPFOG00000003597	ENSPFOG00000003675
Sailfin molly	MODERN SPECIES	52								ENSPLAG00000010209	ENSPLAG00000010180	ENSPLAG00000010172 #20	ONECUT3 (ENSPLAG00000010117) ##21	foxq2 (ENSPLAG00000010072)	pias4a (ENSPLAG00000010061)	map2k2a (ENSPLAG00000010038)	ENSPLAG00000010005	tcf3b (ENSPLAG00000009999) #22	ENSPLAG00000009907	ENSPLAG00000009897 #24	ENSPLAG00000009874	ENSPLAG00000009845	hmg20b (ENSPLAG00000000702)	ENSPLAG00000009753	rxfp3.2b (ENSPLAG00000009691)	creb3l3a (ENSPLAG00000009679)	ENSPLAG00000009650
Guppy	MODERN SPECIES	456	ell (ENSPREG00000009061)	DOT1L (ENSPREG00000008971) #8	amh (ENSPREG00000008895)	oaz1a (ENSPREG00000008867)	ENSPREG00000008855	org (ENSPREG00000008841)	lingo3a (ENSPREG00000008825)	nfil3-4 (ENSPREG00000008822)	ENSPREG00000008799	ENSPREG00000008766 #20	ONECUT3 (ENSPREG00000008755) ##21	foxq2 (ENSPREG00000008748)	pias4a (ENSPREG00000008712)	map2k2a (ENSPREG00000008664)	ENSPREG00000008649	tcf3b (ENSPREG00000008581) #22	UQCR11 (ENSPREG00000008563) #23	ENSPREG00000008542 #24	mbd3b (ENSPREG00000008488)	unc13a (ENSPREG00000008408)	hmg20b (ENSPREG00000008390)	ENSPREG00000008298	rxfp3.2b (ENSPREG00000008268)	creb3l3a (ENSPREG00000008253)	celf5a (ENSPREG00000008235)	rgmd (ENSPREG00000008220)	ENSPREG00000008205	hsd11b1la (ENSPREG00000008194)	hsd11b1la (ENSPREG00000008181)	micos13 (ENSPREG00000008162)	ENSPREG00000008153
Platyfish	MODERN SPECIES	23	ell (ENSXMAG00000012869)	DOT1L (ENSXMAG00000012854) #8	amh (ENSXMAG00000012844)	oaz1a (ENSXMAG00000012841)	ENSXMAG00000020927	org (ENSXMAG00000030019)	lingo3a (ENSXMAG00000019590)	nfil3-4 (ENSXMAG00000019944)	ENSXMAG00000022500	ENSXMAG00000012771 #20	ONECUT3 (ENSXMAG00000012769) ##21	foxq2 (ENSXMAG00000021529)	pias4a (ENSXMAG00000021264)	map2k2a (ENSXMAG00000021375)	ENSXMAG00000012740	tcf3b (ENSXMAG00000012718) #22	UQCR11 (ENSXMAG00000026408) #23	ENSXMAG00000012716 #24	ENSXMAG00000021430	ENSXMAG00000029443	unc13a (ENSXMAG00000012664)	hmg20b (ENSXMAG00000012647)	ENSXMAG00000012630	rxfp3.2b (ENSXMAG00000012627)	creb3l3a (ENSXMAG00000012615)	celf5a (ENSXMAG00000026192)	rgmd (ENSXMAG00000012585)	hsd11b1la (ENSXMAG00000012575)	hsd11b1la (ENSXMAG00000024190)	micos13 (ENSXMAG00000027033)	ENSXMAG00000027774
NAME_4	ANCESTRAL SPECIES	17	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752	ENSGT00940000157036.e.a #22	ENSGT00950000183005.b.b #24	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A	ENSGT00910000144271.A.c.b.a.a.a
Mummichog	MODERN SPECIES	2455											ONECUT3 (ENSFHEG00000012254) ##21	foxq2 (ENSFHEG00000012274)	pias4a (ENSFHEG00000012325)	map2k2a (ENSFHEG00000000276)	ENSFHEG00000012353	tcf3b (ENSFHEG00000012518) #22	ENSFHEG00000012553 #24	mbd3b (ENSFHEG00000012565)	unc13a (ENSFHEG00000012669)	hmg20b (ENSFHEG00000012684)	ENSFHEG00000012721	rxfp3.2b (ENSFHEG00000012734)	creb3l3a (ENSFHEG00000012771)	celf5a (ENSFHEG00000012816)	rgmd (ENSFHEG00000012836)	hsd11b1la (ENSFHEG00000012843)	hsd11b1la (ENSFHEG00000012868)	micos13 (ENSFHEG00000012877)	ENSFHEG00000012882	ENSFHEG00000000284	ENSFHEG00000012954
Sheepshead minnow	MODERN SPECIES	882																tcf3b (ENSCVAG00000005816) #22	UQCR11 (ENSCVAG00000005710) #23	ENSCVAG00000005691 #24	mbd3b (ENSCVAG00000005664)	unc13a (ENSCVAG00000005601)	hmg20b (ENSCVAG00000005520)	ENSCVAG00000005478	rxfp3.2b (ENSCVAG00000000156)	creb3l3a (ENSCVAG00000005405)	ENSCVAG00000005395
Pinecone sodierfish	MODERN SPECIES	18	ssbp4 (ENSMMDG00005006752)	fkbp8 (ENSMMDG00005006732)	ell (ENSMMDG00005006702)	DOT1L (ENSMMDG00005005213) #8	amh (ENSMMDG00005005169)	oaz1a (ENSMMDG00005005165)	org (ENSMMDG00005005160)	lingo3a (ENSMMDG00005005157)	nfil3-4 (ENSMMDG00005005154)	ENSMMDG00005005147 #20	ONECUT3 (ENSMMDG00005005143) ##21	foxq2 (ENSMMDG00005005140)	pias4a (ENSMMDG00005005133)	map2k2a (ENSMMDG00005004987)	ENSMMDG00005004983	tcf3b (ENSMMDG00005004729) #22	ENSMMDG00005004684	ENSMMDG00005004563 #24	mbd3b (ENSMMDG00005004502)	ENSMMDG00005004469	ENSMMDG00005004444	hmg20b (ENSMMDG00005004430)	btbd2a (ENSMMDG00005004383) #13	ENSMMDG00005003776	rxfp3.2b (ENSMMDG00005003742)	creb3l3a (ENSMMDG00005003726)	celf5a (ENSMMDG00005003668)	rgmd (ENSMMDG00005003652)	hsd11b1la (ENSMMDG00005003645)	micos13 (ENSMMDG00005003641)	ENSMMDG00005003633
Cod	MODERN SPECIES	3	ENSGMOG00000034096	fkbp8 (ENSGMOG00000008694)	ell (ENSGMOG00000008706)	ENSGMOG00000008728 #8	ENSGMOG00000008768	oaz1a (ENSGMOG00000008816)	org (ENSGMOG00000008826)	lingo3a (ENSGMOG00000028112)	ENSGMOG00000034546	ENSGMOG00000029496	ENSGMOG00000008846 #20	ENSGMOG00000008893 ##21	pias4a (ENSGMOG00000008897)	map2k2a (ENSGMOG00000008913)	ENSGMOG00000023336	tcf3b (ENSGMOG00000008934) #22	ENSGMOG00000036369	ENSGMOG00000008953 #24	mbd3b (ENSGMOG00000008969)	hmg20b (ENSGMOG00000011717)	ENSGMOG00000011722	ENSGMOG00000027279	ENSGMOG00000011735	ENSGMOG00000034420	ENSGMOG00000011747	ENSGMOG00000033465	rgmd (ENSGMOG00000025233)	hsd11b1la (ENSGMOG00000011762)	ENSGMOG00000011769	ENSGMOG00000011778	ENSGMOG00000028384
Osteoglossiformes	ANCESTRAL SPECIES	21	ENSGT00940000155914.c.a	ENSGT00390000013515 #8	ENSGT00390000006337	ENSGT00940000159808.i	ENSGT00940000157066.p	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463 #20	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000166752.a	ENSGT00940000157036.e.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.b #24	ENSGT00940000162613.c #25	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.g #13	ENSGT00940000154662.d.d.a	ENSGT00940000159261.d.a	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00390000002629	ENSGT00910000144271.A	ENSGT00910000144271.B	ENSGT00940000161721.g	ENSGT00390000008060
Asian bonytongue	MODERN SPECIES	24	ell (ENSSFOG00015003353)	ENSSFOG00015027631	DOT1L (ENSSFOG00015003432) #8	amh (ENSSFOG00015003441)	oaz1a (ENSSFOG00015003448)	ENSSFOG00015003472	org (ENSSFOG00015003484)	lingo3a (ENSSFOG00015026385)	nfil3-4 (ENSSFOG00015027003)	ENSSFOG00015003531 #20	ENSSFOG00015003587 ##21	foxq2 (ENSSFOG00015003608)	pias4a (ENSSFOG00015028592)	map2k2a (ENSSFOG00015032068)	ENSSFOG00015003716	tcf3b (ENSSFOG00015003739) #22	UQCR11 (ENSSFOG00015033314) #23	MBD3 (ENSSFOG00015003758) #24	MEX3D (ENSSFOG00015025386) #25	mbd3b (ENSSFOG00015003926)	ENSSFOG00015004025	hmg20b (ENSSFOG00015004195)	BTBD2 (ENSSFOG00015025422) #13	ENSSFOG00015004255	creb3l3a (ENSSFOG00015004320)	rxfp3.2b (ENSSFOG00015004360)	ENSSFOG00015004376	rgmd (ENSSFOG00015004418)	hsd11b1la (ENSSFOG00015004455)	micos13 (ENSSFOG00015025362)	ENSSFOG00015004563
P. kingsleyae	MODERN SPECIES	4	ISYNA1 (ENSPKIG00000017847)	DOT1L (ENSPKIG00000017910) #8	amh (ENSPKIG00000017996)	oaz1a (ENSPKIG00000018015)	ENSPKIG00000018026	org (ENSPKIG00000018053)	lingo3a (ENSPKIG00000018082)	nfil3-4 (ENSPKIG00000018095)	ENSPKIG00000018103	ATP8B3 (ENSPKIG00000018165) #20	ENSPKIG00000018283 ##21	foxq2 (ENSPKIG00000018304)	pias4a (ENSPKIG00000018329)	map2k2a (ENSPKIG00000018395)	ENSPKIG00000018457	tcf3b (ENSPKIG00000018482) #22	UQCR11 (ENSPKIG00000018517) #23	MBD3 (ENSPKIG00000018562) #24	MEX3D (ENSPKIG00000018608) #25	mbd3b (ENSPKIG00000018639)	unc13a (ENSPKIG00000018698)	hmg20b (ENSPKIG00000018784)	BTBD2 (ENSPKIG00000018844) #13	ENSPKIG00000018903	rxfp3.2b (ENSPKIG00000018949)	ENSPKIG00000018966
Osteoglossocephalai	ANCESTRAL SPECIES	531														ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT01000000214836
Clupeocephala	ANCESTRAL SPECIES	577														ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836
Euteleosteomorpha	ANCESTRAL SPECIES	427														ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836
Protacanthopterygii	ANCESTRAL SPECIES	43	ENSGT00940000163253.b.c.a.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d.l.b	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	182												ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a ##21	ENSGT00940000153487.b.a.s.b.c	ENSGT00940000157036.e.b.a #22	ENSGT00950000183005.b.a.e #24	ENSGT00940000162613.g #25	ENSGT00940000161905.b	ENSGT00940000159179.g.c #13	ENSGT00940000154662.d.l.b.a	ENSGT00940000159261.d.b	ENSGT00940000160088.c	ENSGT00940000164811.a.b.b.d	ENSGT00950000183102.B.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g.c	ENSGT00940000164939.a.b.c	ENSGT01040000240444.A.b.a.b.g.a	ENSGT00940000159170.d.c	ENSGT00940000155854.b.a.b.c #17
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000157246.a.e	ENSGT00940000160466.d	ENSGT00390000005847.e	ENSGT00390000009230.b.f	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a ##21	ENSGT00940000153487.b.a.s.b.c	ENSGT00940000157036.e.b.a #22	ENSGT00950000183005.b.a.e #24	ENSGT00940000162613.g #25	ENSGT00940000161905.b	ENSGT00940000159179.g.c #13	ENSGT00940000154662.d.l.b.a	ENSGT00940000159261.d.b	ENSGT00940000160088.c	ENSGT00940000164811.a.b.b.d	ENSGT00950000183102.B.e	ENSGT00940000159179.g.d #13	ENSGT00940000154662.d.l.b.b	ENSGT01030000234518.B.a.a.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088.d	ENSGT00940000164811.a.b.b.c
Salmo	ANCESTRAL SPECIES	5	ENSGT00950000182893.a.a.b.a.d	ENSGT00730000111114.f	ENSGT01070000253775.a.d.a.b.b.h.a.c	ENSGT00390000009230.b.f	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a ##21	ENSGT00940000153487.b.a.s.b.c	ENSGT00940000157036.e.b.a #22	ENSGT00950000183005.b.a.e #24	ENSGT00940000162613.g #25	ENSGT00940000161905.b	ENSGT00940000159179.g.c #13	ENSGT00940000154662.d.l.b.a	ENSGT00940000159261.d.b	ENSGT00940000160088.c	ENSGT00940000164811.a.b.b.d	ENSGT00950000183102.B.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g.c	ENSGT00940000164939.a.b.c	ENSGT01040000240444.A.b.a.b.g.a	ENSGT00940000159170.d.c	ENSGT00940000155854.b.a.b.c #17
River trout	MODERN SPECIES	24	ENSSTUG00000014803	mafba (ENSSTUG00000014810)	zhx3b (ENSSTUG00000014823)	ENSSTUG00000014850	ENSSTUG00000015186	stk11 (ENSSTUG00000015207)	SUGP1 (ENSSTUG00000015272)	rnf126 (ENSSTUG00000015294)	ENSSTUG00000015315	ENSSTUG00000015383	ENSSTUG00000015393	fzr1a (ENSSTUG00000015478)	sf3a2 (ENSSTUG00000016194)	ENSSTUG00000016203	map2k2b (ENSSTUG00000016240)	tcf3a (ENSSTUG00000016901) #22	mbd3a (ENSSTUG00000017305) #24	MEX3D (ENSSTUG00000017314) #25	UNC13A (ENSSTUG00000017341)	BTBD2 (ENSSTUG00000018179) #13	eef2b (ENSSTUG00000018799)	ENSSTUG00000019080	sirt6 (ENSSTUG00000019106)	ENSSTUG00000019210	cactin (ENSSTUG00000019247)	stap2a (ENSSTUG00000019274)	sh3gl1a (ENSSTUG00000019324)	rorcb (ENSSTUG00000019392)	ENSSTUG00000019414	SEMA6B (ENSSTUG00000019423)	ABHD17A (ENSSTUG00000019599) #17
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000081335	ENSSSAG00000101882	ENSSSAG00000081329	ENSSSAG00000081319	ENSSSAG00000085746	ENSSSAG00000081313	ENSSSAG00000090795	ENSSSAG00000093405	ENSSSAG00000081306	ENSSSAG00000090503	ENSSSAG00000080501	sf3a2 (ENSSSAG00000081251)	ENSSSAG00000081250	ENSSSAG00000081249 ##21	map2k2b (ENSSSAG00000081195)	tcf3a (ENSSSAG00000081096) #22	ENSSSAG00000102781	mbd3 (ENSSSAG00000081084) #24	MEX3D (ENSSSAG00000120967) #25	ENSSSAG00000080968	ENSSSAG00000080898 #13	eef2b (ENSSSAG00000080848)	ENSSSAG00000080834	ENSSSAG00000080789	ub2r1 (ENSSSAG00000080773)	cactin (ENSSSAG00000080761)	stap2a (ENSSSAG00000105995)	sh3gl1a (ENSSSAG00000080730)	rorcb (ENSSSAG00000080721)	ENSSSAG00000080711	ENSSSAG00000106657
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00950000182893.a.a.b.a.d	ENSGT00730000111114.f	ENSGT00730000111114.e.a.a	ENSGT01070000253775.a.d.a.b.b.h.a.c.a	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a ##21	ENSGT00940000153487.b.a.s.b.c	ENSGT00940000157036.e.b.a #22	ENSGT00950000183005.b.a.e #24	ENSGT00940000162613.g #25	ENSGT00940000161905.b	ENSGT00940000159179.g.d #13	ENSGT00940000154662.d.l.b.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000164811.a.b.b.c	ENSGT00950000183102.B.f	ENSGT00940000165656	ENSGT00940000154737.c.g.d	ENSGT00940000164939.a.b.d	ENSGT01040000240444.A.b.a.b.g.b	ENSGT00940000159170.d.d	ENSGT00940000155854.b.a.b.d #17	ENSGT00940000165115.b.b
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000019220	ENSOMYG00000075714	ENSOMYG00000019510	ENSOMYG00000019570	ENSOMYG00000019626	ENSOMYG00000019684	ENSOMYG00000066967	ENSOMYG00000019727	ENSOMYG00000019806	sf3a2 (ENSOMYG00000020220)	ENSOMYG00000020229	ENSOMYG00000067324	ENSOMYG00000020232 ##21	ENSOMYG00000020234	map2k2b (ENSOMYG00000020235)	tcf3a (ENSOMYG00000020336) #22	mbd3a (ENSOMYG00000020713) #24	MEX3D (ENSOMYG00000020732) #25	ENSOMYG00000012382	ENSOMYG00000021835 #13	eef2b (ENSOMYG00000027146)	ENSOMYG00000027393	ENSOMYG00000062249	ENSOMYG00000027418	cactin (ENSOMYG00000027464)	stap2a (ENSOMYG00000027527)	sh3gl1a (ENSOMYG00000061237)	rorcb (ENSOMYG00000027604)	ENSOMYG00000027625	ENSOMYG00000027655	ENSOMYG00000027737 #17
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00940000160466.d	ENSGT00390000005847.e	ENSGT00950000183067.a.b.b.vb.b	ENSGT00940000158588.d.b.a	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a ##21	ENSGT00940000153487.b.a.s.b.c	ENSGT00940000157036.e.b.a #22	ENSGT00950000183005.b.a.e #24	ENSGT00940000162613.g #25	ENSGT00940000161905.b	ENSGT00940000159179.g.d #13	ENSGT00940000154662.d.l.b.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000164811.a.b.b.c	ENSGT00950000183102.B.f	ENSGT00940000165656	ENSGT00940000154737.c.g.d	ENSGT00940000164939.a.b.d	ENSGT01040000240444.A.b.a.b.g.b	ENSGT00940000156565.t	ENSGT00940000155854.b.a.b.d #17	ENSGT00940000165115.b.b
Chinook salmon	MODERN SPECIES	20	ENSOTSG00005013371	ENSOTSG00005013380	loxl5b (ENSOTSG00005016013)	klf2b (ENSOTSG00005016015)	stk11 (ENSOTSG00005016016)	ENSOTSG00005016017	rnf126 (ENSOTSG00005016028)	ENSOTSG00005016037	ENSOTSG00005016048	ENSOTSG00005016051	fzr1a (ENSOTSG00005016057)	sf3a2 (ENSOTSG00005016319)	ENSOTSG00005016320	ENSOTSG00005016321 ##21	map2k2b (ENSOTSG00005016323)	tcf3a (ENSOTSG00005016324) #22	mbd3a (ENSOTSG00005016345) #24	MEX3D (ENSOTSG00005016346) #25	ENSOTSG00005016347	ENSOTSG00005016348	BTBD2 (ENSOTSG00005016354) #13	eef2b (ENSOTSG00005016745)	ENSOTSG00005016747	sirt6 (ENSOTSG00005035921)	ENSOTSG00005035923	cactin (ENSOTSG00005035926)	stap2a (ENSOTSG00005035930)	sh3gl1a (ENSOTSG00005035932)	rorcb (ENSOTSG00005035934)	ENSOTSG00005035936	SEMA6B (ENSOTSG00005035938)
Coho salmon	MODERN SPECIES	19	ENSOKIG00005047964	CIB3 (ENSOKIG00005047974)	pnhd (ENSOKIG00005048003)	ENSOKIG00005048011	RANBP3 (ENSOKIG00005048041)	STK11 (ENSOKIG00005048064)	ENSOKIG00005048082	RNF126 (ENSOKIG00005037713)	ENSOKIG00005037817	ENSOKIG00005037877	ENSOKIG00005037904	ENSOKIG00005037950	sf3a2 (ENSOKIG00005038153)	ENSOKIG00005038182	map2k2b (ENSOKIG00005038237)	tcf3a (ENSOKIG00005038925) #22	mbd3a (ENSOKIG00005039227) #24	MEX3D (ENSOKIG00005039248) #25	eef2b (ENSOKIG00005040779)	BTBD2 (ENSOKIG00005041142) #13	ENSOKIG00005041410	ENSOKIG00005041426	sirt6 (ENSOKIG00005041455)	cdc34b (ENSOKIG00005041582)	cactin (ENSOKIG00005041624)	stap2a (ENSOKIG00005041672)	sh3gl1a (ENSOKIG00005041721)	rorcb (ENSOKIG00005041778)	ENSOKIG00005041807	SEMA6B (ENSOKIG00005041814)	ABHD17A (ENSOKIG00005041821) #17
Huchen	MODERN SPECIES	1253												sf3a2 (ENSHHUG00000024585)	ENSHHUG00000024582	ENSHHUG00000024579 ##21	map2k2b (ENSHHUG00000024185)	tcf3a (ENSHHUG00000024103) #22	mbd3a (ENSHHUG00000024096) #24	MEX3D (ENSHHUG00000024092) #25	ENSHHUG00000023501	cbln10 (ENSHHUG00000023478)	BTBD2 (ENSHHUG00000023424) #13	eef2b (ENSHHUG00000023418)
Salmoninae	ANCESTRAL SPECIES	239	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000182925.C.a.a.d	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235 #7	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b.d	ENSGT00940000157036.e.b.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a.f #24	ENSGT00940000162613.h #25	ENSGT00940000154929.B.h
Salmoninae_a	ANCESTRAL SPECIES	51	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235 #7	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b.d	ENSGT00940000157036.e.b.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a.f #24	ENSGT00940000162613.h #25	ENSGT00940000154929.B.h
Salmo	ANCESTRAL SPECIES	21	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235 #7	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b.d	ENSGT00940000157036.e.b.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a.f #24	ENSGT00940000162613.h #25	ENSGT00940000154929.B.h	ENSGT00940000159179.g.d #13	ENSGT00940000154662.d.l.b.b	ENSGT01030000234518.B.a.a.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088.d	ENSGT00940000164811.a.b.b.c	ENSGT00950000183102.B.f	ENSGT00940000165656	ENSGT00940000154737.c.g.d	ENSGT00940000164939.a.b.d	ENSGT01040000240444.A.b.a.b.g.b
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000080551	ENSSSAG00000085793	stk11 (ENSSSAG00000094770)	ENSSSAG00000080535	ENSSSAG00000080530	ENSSSAG00000080520	ENSSSAG00000080517	ENSSSAG00000081269	plekhj1 (ENSSSAG00000087805) #7	sf3a2 (ENSSSAG00000080497)	ENSSSAG00000080494	ENSSSAG00000098495	onecut3 (ENSSSAG00000080491) ##21	pias4b (ENSSSAG00000080484)	map2k2b (ENSSSAG00000110636)	tcf3 (ENSSSAG00000080422) #22	ENSSSAG00000114488	QCR10 (ENSSSAG00000080419) #23	ENSSSAG00000080413	mbd3a (ENSSSAG00000080410) #24	MEX3D (ENSSSAG00000080408) #25	ENSSSAG00000085886	ENSSSAG00000113276	ENSSSAG00000102159 #13	EF2 (ENSSSAG00000079662)	ENSSSAG00000079652	ENSSSAG00000079649	ENSSSAG00000063987	cactin (ENSSSAG00000079631)	sema4e (ENSSSAG00000079614)	sh3gl1a (ENSSSAG00000079606)
River trout	MODERN SPECIES	13	ENSSTUG00000042472	ENSSTUG00000042453	stk11 (ENSSTUG00000042429)	ENSSTUG00000042288	rnf126 (ENSSTUG00000042229)	ENSSTUG00000042201	ENSSTUG00000042172	ENSSTUG00000042146	fzr1a (ENSSTUG00000041577)	plekhj1 (ENSSTUG00000041529) #7	sf3a2 (ENSSTUG00000041509)	ENSSTUG00000041459	ENSSTUG00000041450 ##21	pias4b (ENSSTUG00000041412)	map2k2b (ENSSTUG00000040895)	tcf3a (ENSSTUG00000040504) #22	ENSSTUG00000040487	mbd3a (ENSSTUG00000040441) #24	MEX3D (ENSSTUG00000040434) #25	BTBD2 (ENSSTUG00000040152) #13	eef2b (ENSSTUG00000040026)	ENSSTUG00000040011	sirt6 (ENSSTUG00000039934)	ENSSTUG00000039921	cactin (ENSSTUG00000039909)	ENSSTUG00000039902	sema4e (ENSSTUG00000039817)	sh3gl1a (ENSSTUG00000039762)	rorcb (ENSSTUG00000039738)	ENSSTUG00000039730	SEMA6B (ENSSTUG00000039723)
Oncorhynchus	ANCESTRAL SPECIES	46	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235 #7	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b.d	ENSGT00940000157036.e.b.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a.f #24	ENSGT00940000162613.h #25	ENSGT00940000154929.B.h
Oncorhynchus_a	ANCESTRAL SPECIES	56	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235 #7	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b.d	ENSGT00940000157036.e.b.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a.f #24	ENSGT00940000162613.h #25
Coho salmon	MODERN SPECIES	23	ENSOKIG00005024199	ENSOKIG00005024194	stk11 (ENSOKIG00005050234)	SUGP1 (ENSOKIG00005050228)	RNF126 (ENSOKIG00005050226)	ENSOKIG00005050223	ENSOKIG00005050221	ENSOKIG00005050216	ENSOKIG00005050205	plekhj1 (ENSOKIG00005050200) #7	sf3a2 (ENSOKIG00005050196)	ENSOKIG00005050194	ENSOKIG00005050191 ##21	pias4b (ENSOKIG00005050185)	map2k2b (ENSOKIG00005050173)	tcf3a (ENSOKIG00005050153) #22	ENSOKIG00005050138	mbd3a (ENSOKIG00005050135) #24	MEX3D (ENSOKIG00005050133) #25	UNC13A (ENSOKIG00005050044)	BTBD2 (ENSOKIG00005050006) #13	eef2b (ENSOKIG00005049981)	RXFP3 (ENSOKIG00005049961)	ENSOKIG00005049958	cactin (ENSOKIG00005049952)	sema4e (ENSOKIG00005049934)	sh3gl1a (ENSOKIG00005049928)	ENSOKIG00005049922	ENSOKIG00005049920	ENSOKIG00005049919	ENSOKIG00005049917
Chinook salmon	MODERN SPECIES	492															map2k2b (ENSOTSG00005046079)	tcf3a (ENSOTSG00005046078) #22	UQCR11 (ENSOTSG00005046077) #23	mbd3a (ENSOTSG00005046046) #24	MEX3D (ENSOTSG00005046042) #25
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000025525	stk11 (ENSOMYG00000025490)	ENSOMYG00000025369	ENSOMYG00000025305	ENSOMYG00000054246	ENSOMYG00000019717	ENSOMYG00000075756	ENSOMYG00000019145	plekhj1 (ENSOMYG00000019086) #7	sf3a2 (ENSOMYG00000019075)	ENSOMYG00000056264	ENSOMYG00000019056	ENSOMYG00000019049 ##21	pias4b (ENSOMYG00000019044)	map2k2b (ENSOMYG00000019038)	tcf3a (ENSOMYG00000019014) #22	UQCR11 (ENSOMYG00000019001) #23	ENSOMYG00000052459	mbd3a (ENSOMYG00000018993) #24	MEX3D (ENSOMYG00000018976) #25	ENSOMYG00000075676	ENSOMYG00000018794 #13	eef2b (ENSOMYG00000018631)	ENSOMYG00000072890	ENSOMYG00000018556	cactin (ENSOMYG00000018504)	sema4e (ENSOMYG00000018449)	sh3gl1a (ENSOMYG00000027559)	ENSOMYG00000077132	ENSOMYG00000060880	ENSOMYG00000018336
Huchen	MODERN SPECIES	1889												ENSHHUG00000022988	ENSHHUG00000022992 ##21	pias4b (ENSHHUG00000023007)	map2k2b (ENSHHUG00000023032)	tcf3a (ENSHHUG00000023302) #22	ENSHHUG00000023451	mbd3a (ENSHHUG00000023467) #24	MEX3D (ENSHHUG00000023474) #25	ENSHHUG00000023491
Northern pike	MODERN SPECIES	2	ENSELUG00000009593	ENSELUG00000008730	ENSELUG00000008714	stk11 (ENSELUG00000008700)	SUGP1 (ENSELUG00000001358)	rnf126 (ENSELUG00000008634)	ENSELUG00000008591	ENSELUG00000008562	fzr1a (ENSELUG00000008541)	plekhj1 (ENSELUG00000008500) #7	sf3a2 (ENSELUG00000008471)	ENSELUG00000000313	ENSELUG00000000310 ##21	ENSELUG00000008421	map2k2b (ENSELUG00000008388)	tcf3a (ENSELUG00000008346) #22	ENSELUG00000029955	ENSELUG00000008293	mbd3a (ENSELUG00000008232) #24	MEX3D (ENSELUG00000008214) #25	UNC13A (ENSELUG00000008193)	ENSELUG00000008151	BTBD2 (ENSELUG00000008136) #13	eef2b (ENSELUG00000008109)	ENSELUG00000008076	ENSELUG00000008052	sirt6 (ENSELUG00000008030)	cdc34b (ENSELUG00000008006)	cactin (ENSELUG00000007984)	sema4e (ENSELUG00000001612)	stap2a (ENSELUG00000007928)
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Cod	MODERN SPECIES	21	ENSGMOG00000012130	NDUFA13 (ENSGMOG00000012133)	ENSGMOG00000012137	ENSGMOG00000036457	ENSGMOG00000012155	ENSGMOG00000012159	ENSGMOG00000012165	ENSGMOG00000011849	ENSGMOG00000012177	ENSGMOG00000023161	plekhj1 (ENSGMOG00000012181) #7	sf3a2 (ENSGMOG00000012186)	ENSGMOG00000012197	ONECUT3 (ENSGMOG00000012200) ##21	map2k2b (ENSGMOG00000012201)	tcf3a (ENSGMOG00000012207) #22	mbd3a (ENSGMOG00000012214) #24	MEX3D (ENSGMOG00000023271) #25	ENSGMOG00000012220	ENSGMOG00000012238 #13	ENSGMOG00000032283	ENSGMOG00000012240	ENSGMOG00000012243	ENSGMOG00000012247	cactin (ENSGMOG00000012251)	sema4e (ENSGMOG00000012258)	stap2a (ENSGMOG00000012268)	sh3gl1a (ENSGMOG00000032798)	rorcb (ENSGMOG00000012277)	ENSGMOG00000020569	ENSGMOG00000002420
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	8	ENSMMDG00005002904	ENSMMDG00005002898	stk11 (ENSMMDG00005002884)	SUGP1 (ENSMMDG00005002857)	rnf126 (ENSMMDG00005002837)	ENSMMDG00005002824	ENSMMDG00005002807	fzr1a (ENSMMDG00005002253)	plekhj1 (ENSMMDG00005002240) #7	sf3a2 (ENSMMDG00005002233)	ENSMMDG00005002228	ENSMMDG00005002225 ##21	ENSMMDG00005002114	map2k2b (ENSMMDG00005002024)	ENSMMDG00005002010 #22	tcf3a (ENSMMDG00005002001) #22	ENSMMDG00005001997	mbd3a (ENSMMDG00005001994) #24	MEX3D (ENSMMDG00005001969) #25	UNC13A (ENSMMDG00005001615)	BTBD2 (ENSMMDG00005001492) #13	eef2b (ENSMMDG00005001466)	ENSMMDG00005001458	sirt6 (ENSMMDG00005001413)	cdc34b (ENSMMDG00005001373)	cactin (ENSMMDG00005001364)	sema4e (ENSMMDG00005001353)	stap2a (ENSMMDG00005001339)	sh3gl1a (ENSMMDG00005001323)	rorcb (ENSMMDG00005022140)	ENSMMDG00005022135
Pinecone sodierfish	MODERN SPECIES	8	ENSMMDG00005002926	ENSMMDG00005002904	ENSMMDG00005002898	stk11 (ENSMMDG00005002884)	SUGP1 (ENSMMDG00005002857)	rnf126 (ENSMMDG00005002837)	ENSMMDG00005002824	ENSMMDG00005002807	fzr1a (ENSMMDG00005002253)	plekhj1 (ENSMMDG00005002240) #7	sf3a2 (ENSMMDG00005002233)	ENSMMDG00005002228	ENSMMDG00005002225 ##21	ENSMMDG00005002114	map2k2b (ENSMMDG00005002024)	ENSMMDG00005002010 #22	tcf3a (ENSMMDG00005002001) #22	ENSMMDG00005001997	mbd3a (ENSMMDG00005001994) #24	MEX3D (ENSMMDG00005001969) #25	UNC13A (ENSMMDG00005001615)	BTBD2 (ENSMMDG00005001492) #13	eef2b (ENSMMDG00005001466)	ENSMMDG00005001458	sirt6 (ENSMMDG00005001413)	cdc34b (ENSMMDG00005001373)	cactin (ENSMMDG00005001364)	sema4e (ENSMMDG00005001353)	stap2a (ENSMMDG00005001339)	sh3gl1a (ENSMMDG00005001323)	rorcb (ENSMMDG00005022140)
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Tiger tail seahorse	MODERN SPECIES	488	NDUFA13 (ENSHCOG00000001161)	cirbpa (ENSHCOG00000001170)	ENSHCOG00000001174	ENSHCOG00000001177	stk11 (ENSHCOG00000001184)	ENSHCOG00000001186	SUGP1 (ENSHCOG00000001195)	ENSHCOG00000001200	ENSHCOG00000001205	fzr1a (ENSHCOG00000001211)	plekhj1 (ENSHCOG00000001220) #7	sf3a2 (ENSHCOG00000001223)	ENSHCOG00000001227	ONECUT3 (ENSHCOG00000001231) ##21	ENSHCOG00000001246	tcf3a (ENSHCOG00000001261) #22	ENSHCOG00000001266	mbd3a (ENSHCOG00000001269) #24	MEX3D (ENSHCOG00000001289) #25	ENSHCOG00000001302	ENSHCOG00000001325	ENSHCOG00000001336	BTBD2 (ENSHCOG00000001342) #13	eef2b (ENSHCOG00000001360)	ENSHCOG00000001364	sirt6 (ENSHCOG00000000050)	cdc34b (ENSHCOG00000001381)	cactin (ENSHCOG00000001390)	ENSHCOG00000001395	sema4e (ENSHCOG00000001415)	ENSHCOG00000001423
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Amphiprion	ANCESTRAL SPECIES	48	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT01030000234518.B.a.a.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Orange clownfish	MODERN SPECIES	1	cirbpa (ENSAPEG00000011989)	ENSAPEG00000012024	ENSAPEG00000012060	stk11 (ENSAPEG00000012073)	SUGP1 (ENSAPEG00000012114)	rnf126 (ENSAPEG00000012142)	ENSAPEG00000012186	ENSAPEG00000012230	fzr1a (ENSAPEG00000012263)	plekhj1 (ENSAPEG00000012320) #7	sf3a2 (ENSAPEG00000012336)	ENSAPEG00000012351	ENSAPEG00000012371 ##21	ENSAPEG00000012394	map2k2b (ENSAPEG00000012403)	tcf3a (ENSAPEG00000012450) #22	UQCR11 (ENSAPEG00000012488) #23	mbd3a (ENSAPEG00000012496) #24	MEX3D (ENSAPEG00000012520) #25	UNC13A (ENSAPEG00000012677)	BTBD2 (ENSAPEG00000012786) #13	eef2b (ENSAPEG00000012820)	ENSAPEG00000012872	sirt6 (ENSAPEG00000012889)	cdc34b (ENSAPEG00000012916)	cactin (ENSAPEG00000012929)	sema4e (ENSAPEG00000012955)	stap2a (ENSAPEG00000012974)	sh3gl1a (ENSAPEG00000013013)	rorcb (ENSAPEG00000013062)	ENSAPEG00000013108
Clown anemonefish	MODERN SPECIES	1295	cirbpa (ENSAOCG00000016212)	ENSAOCG00000016195	ENSAOCG00000016184	stk11 (ENSAOCG00000016166)	SUGP1 (ENSAOCG00000016128)	rnf126 (ENSAOCG00000016106)	ENSAOCG00000016074	ENSAOCG00000002542	fzr1a (ENSAOCG00000016035)	plekhj1 (ENSAOCG00000002709) #7	sf3a2 (ENSAOCG00000015960)	ENSAOCG00000015917	ENSAOCG00000015906 ##21	ENSAOCG00000015862	map2k2b (ENSAOCG00000015707)	tcf3a (ENSAOCG00000015648) #22	UQCR11 (ENSAOCG00000015556) #23	mbd3a (ENSAOCG00000001075) #24	MEX3D (ENSAOCG00000015529) #25	UNC13A (ENSAOCG00000015504)	BTBD2 (ENSAOCG00000015404) #13	eef2b (ENSAOCG00000015356)	MAPKAPK3 (ENSAOCG00000015275)	pfkfb4a (ENSAOCG00000015220)	arpc4 (ENSAOCG00000002269)	tada3l (ENSAOCG00000015148)	RBM38 (ENSAOCG00000015117)
Spiny chromis	MODERN SPECIES	1688												ENSAPOG00000004434	ENSAPOG00000004456 ##21	ENSAPOG00000004611	map2k2b (ENSAPOG00000004735)	tcf3a (ENSAPOG00000004805) #22	UQCR11 (ENSAPOG00000004826) #23	mbd3a (ENSAPOG00000004857) #24	MEX3D (ENSAPOG00000000124) #25
Bicolor damselfish	MODERN SPECIES	1195								ENSSPAG00000004874	fzr1a (ENSSPAG00000004888)	plekhj1 (ENSSPAG00000004938) #7	sf3a2 (ENSSPAG00000004960)	ENSSPAG00000004979	ENSSPAG00000004997 ##21	ENSSPAG00000005020	map2k2b (ENSSPAG00000005154)	tcf3a (ENSSPAG00000005180) #22	ENSSPAG00000005242	mbd3a (ENSSPAG00000005249) #24	MEX3D (ENSSPAG00000005264) #25
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Nile tilapia	MODERN SPECIES	9	cirbpa (ENSONIG00000010169)	ENSONIG00000010171	ENSONIG00000010173	stk11 (ENSONIG00000010176)	SUGP1 (ENSONIG00000010178)	rnf126 (ENSONIG00000010181)	ENSONIG00000010188	ENSONIG00000010190	fzr1a (ENSONIG00000010194)	plekhj1 (ENSONIG00000035519) #7	sf3a2 (ENSONIG00000027140)	ENSONIG00000010199	ENSONIG00000039080 ##21	ENSONIG00000010200	map2k2b (ENSONIG00000010201)	tcf3a (ENSONIG00000010206) #22	UQCR11 (ENSONIG00000041241) #23	mbd3a (ENSONIG00000010217) #24	MEX3D (ENSONIG00000028717) #25	UNC13A (ENSONIG00000010221)	BTBD2 (ENSONIG00000010224) #13	eef2b (ENSONIG00000010226)	ENSONIG00000010228	ENSONIG00000010229	sirt6 (ENSONIG00000010230)	ENSONIG00000002295	cactin (ENSONIG00000010237)	sema4e (ENSONIG00000010239)	stap2a (ENSONIG00000010244)	ENSONIG00000033280	sh3gl1a (ENSONIG00000010245)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b	ENSGT01040000240444.A.b.a.b
Lyretail cichlid	MODERN SPECIES	300	cirbpa (ENSNBRG00000019658)	ENSNBRG00000019693	ENSNBRG00000019709	stk11 (ENSNBRG00000019738)	ENSNBRG00000019759	ENSNBRG00000019774	rnf126 (ENSNBRG00000019784)	ENSNBRG00000019794	ENSNBRG00000019812	fzr1a (ENSNBRG00000019842)	plekhj1 (ENSNBRG00000019862) #7	sf3a2 (ENSNBRG00000019872)	ENSNBRG00000019904	ENSNBRG00000019917	map2k2b (ENSNBRG00000019941)	tcf3a (ENSNBRG00000019974) #22	UQCR11 (ENSNBRG00000020012) #23	mbd3a (ENSNBRG00000020027) #24	MEX3D (ENSNBRG00000020089) #25	UNC13A (ENSNBRG00000020104)	BTBD2 (ENSNBRG00000020180) #13	eef2b (ENSNBRG00000020205)	ENSNBRG00000020250	sirt6 (ENSNBRG00000020268)	ENSNBRG00000020291	cactin (ENSNBRG00000020310)	sema4e (ENSNBRG00000020335)	stap2a (ENSNBRG00000020352)	sh3gl1a (ENSNBRG00000020383)	rorcb (ENSNBRG00000020403)	ENSNBRG00000020425
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b	ENSGT01040000240444.A.b.a.b
Burton s mouthbrooder	MODERN SPECIES	306	cirbpa (ENSHBUG00000022060)	ENSHBUG00000022050	ENSHBUG00000022044	stk11 (ENSHBUG00000022038)	SUGP1 (ENSHBUG00000022000)	rnf126 (ENSHBUG00000021965)	ENSHBUG00000021923	ENSHBUG00000021888	fzr1a (ENSHBUG00000021847)	plekhj1 (ENSHBUG00000021808) #7	sf3a2 (ENSHBUG00000021796)	ENSHBUG00000021785	ENSHBUG00000021775 ##21	ENSHBUG00000021754	map2k2b (ENSHBUG00000021744)	tcf3a (ENSHBUG00000021717) #22	UQCR11 (ENSHBUG00000021625) #23	mbd3a (ENSHBUG00000021612) #24	MEX3D (ENSHBUG00000021600) #25	UNC13A (ENSHBUG00000021558)	BTBD2 (ENSHBUG00000021419) #13	eef2b (ENSHBUG00000021382)	ENSHBUG00000021305	sirt6 (ENSHBUG00000021297)	ENSHBUG00000021254	cactin (ENSHBUG00000021214)	sema4e (ENSHBUG00000021180)	stap2a (ENSHBUG00000021154)	sh3gl1a (ENSHBUG00000021136)	rorcb (ENSHBUG00000021110)	ENSHBUG00000021073
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b	ENSGT01040000240444.A.b.a.b
P. nyererei	MODERN SPECIES	299	ENSPNYG00000007184	ENSPNYG00000007161	stk11 (ENSPNYG00000007076)	ENSPNYG00000007066	ENSPNYG00000007047	rnf126 (ENSPNYG00000007041)	ENSPNYG00000007014	ENSPNYG00000007001	fzr1a (ENSPNYG00000006958)	plekhj1 (ENSPNYG00000006936) #7	sf3a2 (ENSPNYG00000006928)	ENSPNYG00000006911	ENSPNYG00000006893 ##21	ENSPNYG00000006841	map2k2b (ENSPNYG00000006796)	tcf3a (ENSPNYG00000006730) #22	UQCR11 (ENSPNYG00000006711) #23	mbd3a (ENSPNYG00000006645) #24	MEX3D (ENSPNYG00000006622) #25	UNC13A (ENSPNYG00000006554)	BTBD2 (ENSPNYG00000006514) #13	eef2b (ENSPNYG00000006476)	ENSPNYG00000006452	sirt6 (ENSPNYG00000006430)	ENSPNYG00000006413	cactin (ENSPNYG00000006390)	sema4e (ENSPNYG00000006379)	stap2a (ENSPNYG00000006342)	sh3gl1a (ENSPNYG00000006304)	rorcb (ENSPNYG00000006271)	ENSPNYG00000006262
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b	ENSGT01040000240444.A.b.a.b
Eastern happy	MODERN SPECIES	9	ENSACLG00000002094	ENSACLG00000002119	ENSACLG00000002139	stk11 (ENSACLG00000002194)	SUGP1 (ENSACLG00000002221)	rnf126 (ENSACLG00000002225)	ENSACLG00000002245	ENSACLG00000002268	fzr1a (ENSACLG00000002289)	plekhj1 (ENSACLG00000002336) #7	sf3a2 (ENSACLG00000002356)	ENSACLG00000002528	ENSACLG00000002533 ##21	ENSACLG00000002545	map2k2b (ENSACLG00000002553)	tcf3a (ENSACLG00000002577) #22	UQCR11 (ENSACLG00000002686) #23	mbd3a (ENSACLG00000002716) #24	MEX3D (ENSACLG00000002826) #25	UNC13A (ENSACLG00000002861)	BTBD2 (ENSACLG00000003010) #13	eef2b (ENSACLG00000003034)	ENSACLG00000003077	sirt6 (ENSACLG00000003087)	ENSACLG00000003102	cactin (ENSACLG00000003120)	sema4e (ENSACLG00000003140)	stap2a (ENSACLG00000003155)	sh3gl1a (ENSACLG00000003187)	rorcb (ENSACLG00000003222)	ENSACLG00000003252
Zebra mbuna	MODERN SPECIES	1100	ENSMZEG00005025577	ENSMZEG00005025580	ENSMZEG00005025583	stk11 (ENSMZEG00005025586)	SUGP1 (ENSMZEG00005025588)	rnf126 (ENSMZEG00005025594)	ENSMZEG00005025597	ENSMZEG00005025600	fzr1a (ENSMZEG00005025605)	plekhj1 (ENSMZEG00005025608) #7	sf3a2 (ENSMZEG00005025609)	ENSMZEG00005025610	ENSMZEG00005025611 ##21	ENSMZEG00005025613	map2k2b (ENSMZEG00005025620)	tcf3a (ENSMZEG00005025622) #22	UQCR11 (ENSMZEG00005025623) #23	mbd3a (ENSMZEG00005025624) #24	MEX3D (ENSMZEG00005025626) #25	UNC13A (ENSMZEG00005025629)	BTBD2 (ENSMZEG00005025631) #13	eef2b (ENSMZEG00005025634)	ENSMZEG00005025636	sirt6 (ENSMZEG00005025637)	ENSMZEG00005025638	cactin (ENSMZEG00005025639)	sema4e (ENSMZEG00005025640)	stap2a (ENSMZEG00005025641)	sh3gl1a (ENSMZEG00005025642)	rorcb (ENSMZEG00005025643)	ENSMZEG00005025644
Midas cichlid	MODERN SPECIES	1217			ENSACIG00000018437	stk11 (ENSACIG00000018328)	SUGP1 (ENSACIG00000018294)	rnf126 (ENSACIG00000018279)	ENSACIG00000018262	ENSACIG00000018222	FZR1 (ENSACIG00000018193)	plekhj1 (ENSACIG00000018173) #7	sf3a2 (ENSACIG00000018153)	ENSACIG00000018134	ENSACIG00000018119 ##21	ENSACIG00000017976	map2k2b (ENSACIG00000017944)	tcf3a (ENSACIG00000017917) #22	UQCR11 (ENSACIG00000017911) #23	mbd3a (ENSACIG00000017776) #24	MEX3D (ENSACIG00000017738) #25	UNC13A (ENSACIG00000017680)	BTBD2 (ENSACIG00000017658) #13	eef2b (ENSACIG00000017631)	ENSACIG00000017621	ENSACIG00000017614	RXFP3 (ENSACIG00000017604)	sirt6 (ENSACIG00000017596)	ENSACIG00000017466	cactin (ENSACIG00000017436)	sema4e (ENSACIG00000017360)	stap2a (ENSACIG00000017334)	sh3gl1a (ENSACIG00000017308)
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Mangrove rivulus	MODERN SPECIES	64	ENSKMAG00000005852	NDUFA13 (ENSKMAG00000005877)	cirbpa (ENSKMAG00000005905)	ENSKMAG00000005936	ENSKMAG00000005955	stk11 (ENSKMAG00000005988)	SUGP1 (ENSKMAG00000006042)	rnf126 (ENSKMAG00000006112)	ENSKMAG00000006148	ENSKMAG00000006176	fzr1a (ENSKMAG00000006208)	plekhj1 (ENSKMAG00000006265) #7	sf3a2 (ENSKMAG00000006295)	ENSKMAG00000006347	ONECUT3 (ENSKMAG00000006444) ##21	tcf3a (ENSKMAG00000006477) #22	ENSKMAG00000006582	mbd3a (ENSKMAG00000006620) #24	MEX3D (ENSKMAG00000006645) #25	UNC13A (ENSKMAG00000006712)	BTBD2 (ENSKMAG00000006816) #13	tmem175 (ENSKMAG00000006844)	eef2b (ENSKMAG00000006881)	ENSKMAG00000006942	ENSKMAG00000006964	sirt6 (ENSKMAG00000006986)	cdc34b (ENSKMAG00000007016)	cactin (ENSKMAG00000007051)	sema4e (ENSKMAG00000007090)	stap2a (ENSKMAG00000007115)	sh3gl1a (ENSKMAG00000007148)
Turquoise killifish	MODERN SPECIES	1618	CTXN1 (ENSNFUG00015020167)	TIMM44 (ENSNFUG00015020126)	Nfu_g_1_020481 (ENSNFUG00015020092)	MARCH2 (ENSNFUG00015020081)	slc25a36a (ENSNFUG00015020070)	SPSB4 (ENSNFUG00015020062)	clstn2a (ENSNFUG00015019721)	NMNAT3 (ENSNFUG00015019677)	NMNAT3 (ENSNFUG00015019671)	rbp2b (ENSNFUG00015019621)	COPB2 (ENSNFUG00015018238)	dvl3a (ENSNFUG00015017928)	ENSNFUG00015017891	LINGO3 (ENSNFUG00015017886)	ONECUT3 (ENSNFUG00015017880) ##21	tcf3a (ENSNFUG00015017863) #22	UQCR11 (ENSNFUG00015017854) #23	mbd3a (ENSNFUG00015017839) #24	MEX3D (ENSNFUG00015017831) #25	BTBD2 (ENSNFUG00015016901) #13	eef2b (ENSNFUG00015016853)	RXFP3.2A (ENSNFUG00015016841)	SIRT6 (ENSNFUG00015016584)	CDC34B (ENSNFUG00015016568)	CACTIN (ENSNFUG00015016550)	sema4e (ENSNFUG00015016494)	STAP2A (ENSNFUG00015016469)	sh3gl1a (ENSNFUG00015016454)	rorcb (ENSNFUG00015016449)	ENSNFUG00015016446	SEMA6B (ENSNFUG00015016251)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
NAME_4	ANCESTRAL SPECIES	9	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Sheepshead minnow	MODERN SPECIES	771										ENSCVAG00000021430	fzr1a (ENSCVAG00000021420)	plekhj1 (ENSCVAG00000021361) #7	sf3a2 (ENSCVAG00000021349)	ENSCVAG00000021344	ONECUT3 (ENSCVAG00000021337) ##21	tcf3a (ENSCVAG00000021300) #22	UQCR11 (ENSCVAG00000021271) #23	mbd3a (ENSCVAG00000021258) #24	MEX3D (ENSCVAG00000021251) #25	UNC13A (ENSCVAG00000021103)	BTBD2 (ENSCVAG00000018788) #13	eef2b (ENSCVAG00000018746)	ENSCVAG00000018701
Mummichog	MODERN SPECIES	2335	NDUFA13 (ENSFHEG00000002587)	cirbpa (ENSFHEG00000002580)	ENSFHEG00000002573	ENSFHEG00000002569	stk11 (ENSFHEG00000002568)	SUGP1 (ENSFHEG00000002556)	rnf126 (ENSFHEG00000002544)	ENSFHEG00000002533	ENSFHEG00000002513	ENSFHEG00000002436	fzr1a (ENSFHEG00000002431)	plekhj1 (ENSFHEG00000002406) #7	sf3a2 (ENSFHEG00000002392)	ENSFHEG00000002383	ONECUT3 (ENSFHEG00000002369) ##21	tcf3a (ENSFHEG00000002336) #22	UQCR11 (ENSFHEG00000002286) #23	mbd3a (ENSFHEG00000002278) #24	MEX3D (ENSFHEG00000002269) #25	ENSFHEG00000002261	ENSFHEG00000002251	ENSFHEG00000000071	ENSFHEG00000002201	BTBD2 (ENSFHEG00000002195) #13	eef2b (ENSFHEG00000002184)	ENSFHEG00000002170	ENSFHEG00000002150	sirt6 (ENSFHEG00000002142)	cdc34b (ENSFHEG00000002128)	cactin (ENSFHEG00000002121)	sema4e (ENSFHEG00000002108)
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Poecilia	ANCESTRAL SPECIES	16	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
NAME_6	ANCESTRAL SPECIES	250	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	604	ENSPFOG00000015671	ENSPFOG00000015675	ENSPFOG00000015701	stk11 (ENSPFOG00000015730)	ENSPFOG00000015739	SUGP1 (ENSPFOG00000015785)	rnf126 (ENSPFOG00000015821)	ENSPFOG00000015842	ENSPFOG00000015888	fzr1a (ENSPFOG00000015905)	plekhj1 (ENSPFOG00000015943) #7	sf3a2 (ENSPFOG00000015945)	ENSPFOG00000015956	ENSPFOG00000015965	ONECUT3 (ENSPFOG00000015971) ##21	tcf3a (ENSPFOG00000015977) #22	UQCR11 (ENSPFOG00000016025) #23	mbd3a (ENSPFOG00000016030) #24
Amazon molly	MODERN SPECIES	525																tcf3a (ENSPFOG00000013466) #22	UQCR11 (ENSPFOG00000013452) #23	mbd3a (ENSPFOG00000013427) #24	MEX3D (ENSPFOG00000013402) #25	UNC13A (ENSPFOG00000012994)	BTBD2 (ENSPFOG00000012896) #13	eef2b (ENSPFOG00000012825)	ENSPFOG00000023287	ENSPFOG00000012807	sirt6 (ENSPFOG00000012759)	ENSPFOG00000012745	cactin (ENSPFOG00000012712)	sema4e (ENSPFOG00000012590)	stap2a (ENSPFOG00000012582)	sh3gl1a (ENSPFOG00000012471)	rorcb (ENSPFOG00000012359)
Platyfish	MODERN SPECIES	20	ENSXMAG00000019339	NDUFA13 (ENSXMAG00000019337)	cirbpa (ENSXMAG00000019336)	ENSXMAG00000019334	ENSXMAG00000023845	stk11 (ENSXMAG00000019332)	SUGP1 (ENSXMAG00000019331)	rnf126 (ENSXMAG00000019329)	ENSXMAG00000019326	ENSXMAG00000027603	fzr1a (ENSXMAG00000019321)	plekhj1 (ENSXMAG00000019320) #7	sf3a2 (ENSXMAG00000029068)	ENSXMAG00000019316	ONECUT3 (ENSXMAG00000012192) ##21	tcf3a (ENSXMAG00000019314) #22	mbd3a (ENSXMAG00000019312) #24	MEX3D (ENSXMAG00000025266) #25	UNC13A (ENSXMAG00000019310)	BTBD2 (ENSXMAG00000019309) #13	eef2b (ENSXMAG00000019308)	ENSXMAG00000023280	ENSXMAG00000019307	sirt6 (ENSXMAG00000021658)	ENSXMAG00000019305	cactin (ENSXMAG00000025137)	sema4e (ENSXMAG00000019302)	stap2a (ENSXMAG00000019301)	sh3gl1a (ENSXMAG00000019300)	rorcb (ENSXMAG00000019296)	ENSXMAG00000019983
Oryzias	ANCESTRAL SPECIES	12	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Indian medaka	MODERN SPECIES	10	ENSOMEG00000021514	NDUFA13 (ENSOMEG00000021487)	cirbpa (ENSOMEG00000021469)	ENSOMEG00000021422	ENSOMEG00000021392	stk11 (ENSOMEG00000021335)	SUGP1 (ENSOMEG00000021298)	rnf126 (ENSOMEG00000021160)	ENSOMEG00000021114	ENSOMEG00000021065	fzr1a (ENSOMEG00000021007)	plekhj1 (ENSOMEG00000020934) #7	sf3a2 (ENSOMEG00000020860)	ENSOMEG00000020828	ENSOMEG00000020816 ##21	tcf3a (ENSOMEG00000020778) #22	MEX3D (ENSOMEG00000020682) #25	UNC13A (ENSOMEG00000020525)	BTBD2 (ENSOMEG00000020308) #13	eef2b (ENSOMEG00000020260)	ENSOMEG00000020172	ENSOMEG00000020106	sirt6 (ENSOMEG00000020085)	cdc34b (ENSOMEG00000020040)	cactin (ENSOMEG00000019996)	sema4e (ENSOMEG00000019968)	stap2a (ENSOMEG00000019934)	sh3gl1a (ENSOMEG00000019885)	rorcb (ENSOMEG00000019833)	ENSOMEG00000019782	SEMA6B (ENSOMEG00000019770)
Javanese ricefish	MODERN SPECIES	8	ENSOJAG00000023993	NDUFA13 (ENSOJAG00000023992)	cirbpa (ENSOJAG00000023991)	ENSOJAG00000023990	ENSOJAG00000023988	stk11 (ENSOJAG00000023987)	SUGP1 (ENSOJAG00000023984)	rnf126 (ENSOJAG00000023981)	ENSOJAG00000023976	ENSOJAG00000023962	fzr1a (ENSOJAG00000023957)	plekhj1 (ENSOJAG00000023953) #7	sf3a2 (ENSOJAG00000023948)	ENSOJAG00000023946	ONECUT3 (ENSOJAG00000023945) ##21	tcf3a (ENSOJAG00000023940) #22	UQCR11 (ENSOJAG00000023938) #23	mbd3a (ENSOJAG00000023937) #24	MEX3D (ENSOJAG00000023936) #25	UNC13A (ENSOJAG00000023917)	BTBD2 (ENSOJAG00000023906) #13	eef2b (ENSOJAG00000023898)	CREB3L3 (ENSOJAG00000023893)	ENSOJAG00000023892	sirt6 (ENSOJAG00000023891)	cdc34b (ENSOJAG00000023890)	cactin (ENSOJAG00000023888)	sema4e (ENSOJAG00000023885)	stap2a (ENSOJAG00000023880)	sh3gl1a (ENSOJAG00000023879)	rorcb (ENSOJAG00000023875)
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Japanese Medaka HdrR	MODERN SPECIES	8	NDUFA13 (ENSORLG00000015440)	cirbpa (ENSORLG00000015433)	ENSORLG00000021934	ENSORLG00000022795	stk11 (ENSORLG00000015419)	SUGP1 (ENSORLG00000015411)	rnf126 (ENSORLG00000015395)	ENSORLG00000015383	ENSORLG00000027131	spinc (ENSORLG00000015355)	fzr1a (ENSORLG00000015349)	plekhj1 (ENSORLG00000015314) #7	sf3a2 (ENSORLG00000015301)	ENSORLG00000015283	ONECUT3 (ENSORLG00000015269) ##21	tcf3a (ENSORLG00000015259) #22	UQCR11 (ENSORLG00000029127) #23	mbd3a (ENSORLG00000015235) #24	MEX3D (ENSORLG00000015223) #25	UNC13A (ENSORLG00000015199)	BTBD2 (ENSORLG00000015019) #13	eef2b (ENSORLG00000015009)	ENSORLG00000022166	ENSORLG00000014985	sirt6 (ENSORLG00000014983)	cdc34b (ENSORLG00000014979)	cactin (ENSORLG00000014970)	sema4e (ENSORLG00000014954)	stap2a (ENSORLG00000014941)	sh3gl1a (ENSORLG00000014924)	rorcb (ENSORLG00000014886)
Chinese medaka	MODERN SPECIES	1097	ARMC6 (ENSOSIG00000022208)	ENSOSIG00000022205	NDUFA13 (ENSOSIG00000022202)	cirbpa (ENSOSIG00000022200)	ENSOSIG00000022190	stk11 (ENSOSIG00000022185)	ENSOSIG00000022177	rnf126 (ENSOSIG00000022173)	ENSOSIG00000022148	ENSOSIG00000022142	fzr1a (ENSOSIG00000022089)	plekhj1 (ENSOSIG00000022081) #7	sf3a2 (ENSOSIG00000022078)	ENSOSIG00000022077	ONECUT3 (ENSOSIG00000022074) ##21	tcf3a (ENSOSIG00000022071) #22	UQCR11 (ENSOSIG00000022060) #23	mbd3a (ENSOSIG00000022058) #24	MEX3D (ENSOSIG00000022049) #25	UNC13A (ENSOSIG00000021103)	BTBD2 (ENSOSIG00000021006) #13	eef2b (ENSOSIG00000020949)
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Seriola	ANCESTRAL SPECIES		ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Yellowtail amberjack	MODERN SPECIES	2574	cirbpa (ENSSLDG00000011320)	ENSSLDG00000011306	ENSSLDG00000011275	stk11 (ENSSLDG00000011238)	SUGP1 (ENSSLDG00000011109)	rnf126 (ENSSLDG00000011057)	ENSSLDG00000011003	ENSSLDG00000010978	fzr1a (ENSSLDG00000010925)	plekhj1 (ENSSLDG00000010898) #7	sf3a2 (ENSSLDG00000010874)	ENSSLDG00000010855	ENSSLDG00000010824 ##21	ENSSLDG00000010623	map2k2b (ENSSLDG00000010536)	tcf3a (ENSSLDG00000010354) #22	ENSSLDG00000010298	mbd3a (ENSSLDG00000010277) #24	MEX3D (ENSSLDG00000010251) #25
Greater amberjack	MODERN SPECIES	83	cirbpa (ENSSDUG00000016099)	ENSSDUG00000016081	ENSSDUG00000016066	stk11 (ENSSDUG00000016044)	SUGP1 (ENSSDUG00000016002)	rnf126 (ENSSDUG00000015961)	ENSSDUG00000015921	ENSSDUG00000015903	fzr1a (ENSSDUG00000015856)	plekhj1 (ENSSDUG00000015836) #7	sf3a2 (ENSSDUG00000015810)	ENSSDUG00000015791	ENSSDUG00000015775 ##21	ENSSDUG00000015751	map2k2b (ENSSDUG00000015722)	tcf3a (ENSSDUG00000015626) #22	ENSSDUG00000015612	mbd3a (ENSSDUG00000015576) #24	MEX3D (ENSSDUG00000015559) #25	UNC13A (ENSSDUG00000015480)	BTBD2 (ENSSDUG00000015452) #13	eef2b (ENSSDUG00000015383)	ENSSDUG00000015370	sirt6 (ENSSDUG00000015343)	cdc34b (ENSSDUG00000015320)	cactin (ENSSDUG00000015266)	sema4e (ENSSDUG00000015240)	stap2a (ENSSDUG00000015219)	sh3gl1a (ENSSDUG00000015186)	rorcb (ENSSDUG00000015136)	ENSSDUG00000015128
Barramundi perch	MODERN SPECIES	69	cirbpa (ENSLCAG00010016235)	ENSLCAG00010016241	ENSLCAG00010016246	stk11 (ENSLCAG00010016248)	SUGP1 (ENSLCAG00010016250)	rnf126 (ENSLCAG00010016255)	ENSLCAG00010016259	ENSLCAG00010016262	fzr1a (ENSLCAG00010016290)	plekhj1 (ENSLCAG00010016474) #7	sf3a2 (ENSLCAG00010016478)	ENSLCAG00010016483	ENSLCAG00010016486 ##21	ENSLCAG00010016490	map2k2b (ENSLCAG00010016500)	tcf3a (ENSLCAG00010016519) #22	ENSLCAG00010016533	mbd3a (ENSLCAG00010016536) #24	MEX3D (ENSLCAG00010016541) #25	UNC13A (ENSLCAG00010016701)	BTBD2 (ENSLCAG00010017348) #13	eef2b (ENSLCAG00010017398)	ENSLCAG00010017809	ENSLCAG00010017819	sirt6 (ENSLCAG00010017822)	cdc34b (ENSLCAG00010017831)	cactin (ENSLCAG00010017844)	sema4e (ENSLCAG00010017856)	stap2a (ENSLCAG00010017883)	sh3gl1a (ENSLCAG00010017885)	rorcb (ENSLCAG00010017892)
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Turbot	MODERN SPECIES	19	ENSSMAG00000002373	ENSSMAG00000002412	ENSSMAG00000002439	ENSSMAG00000002450	ENSSMAG00000002464	ENSSMAG00000002495	ENSSMAG00000002519	ENSSMAG00000002539	ENSSMAG00000031477	ENSSMAG00000002573	sf3a2 (ENSSMAG00000027073)	ENSSMAG00000002644	ENSSMAG00000002648 ##21	ENSSMAG00000002680	map2k2b (ENSSMAG00000002878)	tcf3a (ENSSMAG00000002954) #22	UQCR11 (ENSSMAG00000003012) #23	mbd3a (ENSSMAG00000003031) #24	MEX3D (ENSSMAG00000003087) #25	ENSSMAG00000003126	ENSSMAG00000003277 #13	eef2b (ENSSMAG00000003334)	ENSSMAG00000003391	ENSSMAG00000003407	ENSSMAG00000003421	ENSSMAG00000003468	cactin (ENSSMAG00000003498)	sema4e (ENSSMAG00000003518)	stap2a (ENSSMAG00000003544)	ENSSMAG00000025205	rorcb (ENSSMAG00000003620)
Tongue sole	MODERN SPECIES	12	fzr1a (ENSCSEG00000014514)	ENSCSEG00000014494	ENSCSEG00000014456	rnf126 (ENSCSEG00000014439)	SUGP1 (ENSCSEG00000014421)	stk11 (ENSCSEG00000014404)	ENSCSEG00000014388	ENSCSEG00000014376	cirbpa (ENSCSEG00000014344)	NDUFA13 (ENSCSEG00000014328)	plekhj1 (ENSCSEG00000014322) #7	sf3a2 (ENSCSEG00000014308)	ENSCSEG00000014294	ONECUT3 (ENSCSEG00000014280) ##21	ENSCSEG00000014265	tcf3a (ENSCSEG00000014183) #22	UQCR11 (ENSCSEG00000014170) #23	mbd3a (ENSCSEG00000014164) #24	MEX3D (ENSCSEG00000014157) #25	ENSCSEG00000014126	BTBD2 (ENSCSEG00000014111) #13	eef2b (ENSCSEG00000014097)	RXFP3 (ENSCSEG00000014088)	sirt6 (ENSCSEG00000014078)	cdc34b (ENSCSEG00000014024)	cactin (ENSCSEG00000014010)	sema4e (ENSCSEG00000013974)	stap2a (ENSCSEG00000013955)	sh3gl1a (ENSCSEG00000013941)	rorcb (ENSCSEG00000013795)	ENSCSEG00000013763
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000010196	NDUFA13 (ENSMAMG00000010191)	ENSMAMG00000010168	ENSMAMG00000010150	ENSMAMG00000010112	ENSMAMG00000010087	ENSMAMG00000010022	ENSMAMG00000009996	ENSMAMG00000009954	ENSMAMG00000009939	ENSMAMG00000009897	sf3a2 (ENSMAMG00000009881)	ENSMAMG00000009806	ONECUT3 (ENSMAMG00000009776) ##21	map2k2b (ENSMAMG00000009747)	tcf3a (ENSMAMG00000009676) #22	ENSMAMG00000009650	mbd3a (ENSMAMG00000009631) #24	MEX3D (ENSMAMG00000009575) #25	ENSMAMG00000009493	ENSMAMG00000009448 #13	eef2b (ENSMAMG00000009410)	ENSMAMG00000009384	ENSMAMG00000028658	ENSMAMG00000009339	cactin (ENSMAMG00000009327)	sema4e (ENSMAMG00000009285)	stap2a (ENSMAMG00000009267)	sh3gl1a (ENSMAMG00000009226)	rorcb (ENSMAMG00000009175)	ENSMAMG00000009159
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Siamese fighting fish	MODERN SPECIES	8	odr4 (ENSBSLG00000024872)	dpydb (ENSBSLG00000024910)	ENSBSLG00000025384	ENSBSLG00000025402	stk11 (ENSBSLG00000025416)	SUGP1 (ENSBSLG00000025481)	rnf126 (ENSBSLG00000025588)	ENSBSLG00000025594	ENSBSLG00000025614	fzr1a (ENSBSLG00000025629)	plekhj1 (ENSBSLG00000025663) #7	sf3a2 (ENSBSLG00000025671)	ENSBSLG00000025674	ONECUT3 (ENSBSLG00000025676) ##21	map2k2b (ENSBSLG00000004962)	tcf3a (ENSBSLG00000005655) #22	UQCR11 (ENSBSLG00000005816) #23	mbd3a (ENSBSLG00000005818) #24	MEX3D (ENSBSLG00000005827) #25	UNC13A (ENSBSLG00000007074)	BTBD2 (ENSBSLG00000011004) #13	eef2b (ENSBSLG00000011206)	ENSBSLG00000011288	ENSBSLG00000011298	sirt6 (ENSBSLG00000011309)	cdc34b (ENSBSLG00000011413)	cactin (ENSBSLG00000011429)	sema4e (ENSBSLG00000011432)	stap2a (ENSBSLG00000011436)	sh3gl1a (ENSBSLG00000011800)	rorcb (ENSBSLG00000012545)
Climbing perch	MODERN SPECIES	8	NDUFA13 (ENSATEG00000014957)	ENSATEG00000026515	ENSATEG00000015018	ENSATEG00000027548	ENSATEG00000015056	ENSATEG00000015089	ENSATEG00000015159	ENSATEG00000015205	ENSATEG00000015349	ENSATEG00000015362	plekhj1 (ENSATEG00000015419) #7	sf3a2 (ENSATEG00000015449)	ENSATEG00000015455	ONECUT3 (ENSATEG00000015466) ##21	map2k2b (ENSATEG00000015486)	tcf3a (ENSATEG00000015526) #22	UQCR11 (ENSATEG00000029685) #23	mbd3a (ENSATEG00000015604) #24	MEX3D (ENSATEG00000015620) #25	ENSATEG00000015705	ENSATEG00000015797 #13	eef2b (ENSATEG00000015820)	ENSATEG00000015848	ENSATEG00000015870	ENSATEG00000015911	cactin (ENSATEG00000015933)	sema4e (ENSATEG00000016033)	stap2a (ENSATEG00000016062)	sh3gl1a (ENSATEG00000016098)	rorcb (ENSATEG00000016141)	ENSATEG00000016202
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b.c	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b	ENSGT01040000240444.A.b.a.b
Fugu	MODERN SPECIES	14	ENSTRUG00000010069	ENSTRUG00000010019	stk11 (ENSTRUG00000009891)	SUGP1 (ENSTRUG00000009724)	rnf126 (ENSTRUG00000009560)	ENSTRUG00000009472	ENSTRUG00000025344	fzr1a (ENSTRUG00000009166)	plekhj1 (ENSTRUG00000024234) #7	sf3a2 (ENSTRUG00000009045)	ENSTRUG00000008968	ONECUT3 (ENSTRUG00000008911) ##21	ENSTRUG00000008600	ENSTRUG00000030348	ENSTRUG00000032499	tcf3a (ENSTRUG00000008147) #22	ENSTRUG00000025231	mbd3a (ENSTRUG00000008081) #24	MEX3D (ENSTRUG00000007986) #25	UNC13A (ENSTRUG00000007676)	BTBD2 (ENSTRUG00000007490) #13	ENSTRUG00000032024	ENSTRUG00000030303	sirt6 (ENSTRUG00000006954)	cdc34b (ENSTRUG00000027982)	cactin (ENSTRUG00000006742)	sema4e (ENSTRUG00000024948)	sh3gl1a (ENSTRUG00000006047)	rorcb (ENSTRUG00000005569)	ENSTRUG00000005512	SEMA6B (ENSTRUG00000005145)
Tetraodon	MODERN SPECIES	6	NDUFA13 (ENSTNIG00000015309)	cirbpa (ENSTNIG00000000450)	CBARP (ENSTNIG00000015310)	stk11 (ENSTNIG00000015311)	SUGP1 (ENSTNIG00000015312)	rnf126 (ENSTNIG00000015313)	ENSTNIG00000015314	ENSTNIG00000015315	fzr1a (ENSTNIG00000015316)	plekhj1 (ENSTNIG00000015317) #7	sf3a2 (ENSTNIG00000015318)	ENSTNIG00000000208	ENSTNIG00000015319	ONECUT3 (ENSTNIG00000015320) ##21	ENSTNIG00000015321	tcf3a (ENSTNIG00000015322) #22	ENSTNIG00000015323	mbd3a (ENSTNIG00000015324) #24	MEX3D (ENSTNIG00000015325) #25	UNC13A (ENSTNIG00000015326)	BTBD2 (ENSTNIG00000015327) #13	ENSTNIG00000015328	ENSTNIG00000015329	sirt6 (ENSTNIG00000015330)	cdc34b (ENSTNIG00000015463)	cactin (ENSTNIG00000015332)	sema4e (ENSTNIG00000015333)	sema4e (ENSTNIG00000015334)	stap2a (ENSTNIG00000015335)	sh3gl1a (ENSTNIG00000015336)	rorcb (ENSTNIG00000015337)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Ballan wrasse	MODERN SPECIES	63	ENSLBEG00000000316	ENSLBEG00000000323	stk11 (ENSLBEG00000000328)	SUGP1 (ENSLBEG00000000335)	rnf126 (ENSLBEG00000000394)	ENSLBEG00000000459	ENSLBEG00000000513	fzr1a (ENSLBEG00000000585)	plekhj1 (ENSLBEG00000000642) #7	sf3a2 (ENSLBEG00000000677)	ENSLBEG00000000719	ENSLBEG00000000734	ENSLBEG00000000750 ##21	ENSLBEG00000000761	map2k2b (ENSLBEG00000000771)	tcf3a (ENSLBEG00000000838) #22	ENSLBEG00000000943	mbd3a (ENSLBEG00000000961) #24	MEX3D (ENSLBEG00000000974) #25	UNC13A (ENSLBEG00000001037)	BTBD2 (ENSLBEG00000001142) #13	eef2b (ENSLBEG00000001176)	ENSLBEG00000001250	ENSLBEG00000001274	sirt6 (ENSLBEG00000001292)	cdc34b (ENSLBEG00000001317)	cactin (ENSLBEG00000001359)	sema4e (ENSLBEG00000001394)	stap2a (ENSLBEG00000001413)	sh3gl1a (ENSLBEG00000001422)	rorcb (ENSLBEG00000001500)
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000165622.e	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000165622.e.a.a	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00390000000719	ENSGT00940000165622.e.a.a	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Stickleback	MODERN SPECIES	2	cirbpa (ENSGACG00000015206)	ENSGACG00000015211	stk11 (ENSGACG00000015219)	SUGP1 (ENSGACG00000015222)	rnf126 (ENSGACG00000015225)	ENSGACG00000015230	ENSGACG00000015231	fzr1a (ENSGACG00000015236)	plekhj1 (ENSGACG00000015244) #7	sf3a2 (ENSGACG00000015255)	ENSGACG00000015265	zp3f.1 (ENSGACG00000015267)	ENSGACG00000015271	ONECUT3 (ENSGACG00000015272) ##21	map2k2b (ENSGACG00000015273)	tcf3a (ENSGACG00000015282) #22	mbd3a (ENSGACG00000015296) #24	MEX3D (ENSGACG00000015299) #25	UNC13A (ENSGACG00000015301)	BTBD2 (ENSGACG00000015306) #13	eef2b (ENSGACG00000015308)	ENSGACG00000015315	sirt6 (ENSGACG00000015316)	cdc34b (ENSGACG00000015317)	cactin (ENSGACG00000015324)	sema4e (ENSGACG00000015326)	stap2a (ENSGACG00000015332)	sh3gl1a (ENSGACG00000015335)	rorcb (ENSGACG00000015341)	ENSGACG00000015344	SEMA6B (ENSGACG00000015346)
Lumpfish	MODERN SPECIES	8	NDUFA13 (ENSCLMG00005006434)	ENSCLMG00005006435	ENSCLMG00005006436	CBARP (ENSCLMG00005006437)	stk11 (ENSCLMG00005006438)	SUGP1 (ENSCLMG00005006439)	RNF126 (ENSCLMG00005006440)	ENSCLMG00005006441	ENSCLMG00005006443	ENSCLMG00005006444	plekhj1 (ENSCLMG00005006721) #7	sf3a2 (ENSCLMG00005006722)	ENSCLMG00005006724	ONECUT3 (ENSCLMG00005006726) ##21	map2k2b (ENSCLMG00005006730)	tcf3a (ENSCLMG00005007129) #22	ENSCLMG00005007130	mbd3a (ENSCLMG00005007131) #24	MEX3D (ENSCLMG00005007132) #25	UNC13A (ENSCLMG00005007134)	ENSCLMG00005007135	BTBD2 (ENSCLMG00005007136) #13	eef2b (ENSCLMG00005007360)	ENSCLMG00005007362	sirt6 (ENSCLMG00005007368)	cdc34b (ENSCLMG00005007372)	cactin (ENSCLMG00005007374)	sema4e (ENSCLMG00005007375)	stap2a (ENSCLMG00005007377)	sh3gl1a (ENSCLMG00005007378)	rorcb (ENSCLMG00005007379)
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00940000165622.e.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Channel bull blenny	MODERN SPECIES	8	cirbpa (ENSCGOG00000011580)	ENSCGOG00000011585	ENSCGOG00000011587	stk11 (ENSCGOG00000011588)	SUGP1 (ENSCGOG00000011646)	rnf126 (ENSCGOG00000011710)	ENSCGOG00000011782	ENSCGOG00000011788	fzr1a (ENSCGOG00000011798)	plekhj1 (ENSCGOG00000012289) #7	sf3a2 (ENSCGOG00000012305)	ENSCGOG00000012340	ENSCGOG00000012345 ##21	ENSCGOG00000012348	map2k2b (ENSCGOG00000012380)	tcf3a (ENSCGOG00000013317) #22	ENSCGOG00000013325	mbd3a (ENSCGOG00000013327) #24	MEX3D (ENSCGOG00000013329) #25	UNC13A (ENSCGOG00000013383)	BTBD2 (ENSCGOG00000016013) #13	eef2b (ENSCGOG00000016161)	RXFP3 (ENSCGOG00000016486)	sirt6 (ENSCGOG00000016503)	cdc34b (ENSCGOG00000016747)	cactin (ENSCGOG00000016766)	sema4e (ENSCGOG00000016781)	stap2a (ENSCGOG00000016839)	sh3gl1a (ENSCGOG00000016844)	rorcb (ENSCGOG00000016857)	ENSCGOG00000016963
Pike perch	MODERN SPECIES	55	ENSSLUG00000002796	ENSSLUG00000002806	ENSSLUG00000002816	stk11 (ENSSLUG00000002824)	SUGP1 (ENSSLUG00000002833)	rnf126 (ENSSLUG00000002851)	ENSSLUG00000002863	ENSSLUG00000002883	fzr1a (ENSSLUG00000002951)	plekhj1 (ENSSLUG00000003469) #7	sf3a2 (ENSSLUG00000003480)	ENSSLUG00000003493	ENSSLUG00000003505 ##21	ENSSLUG00000003577	map2k2b (ENSSLUG00000003610)	tcf3a (ENSSLUG00000003689) #22	ENSSLUG00000003703	mbd3a (ENSSLUG00000003717) #24	MEX3D (ENSSLUG00000003737) #25	UNC13A (ENSSLUG00000004076)	BTBD2 (ENSSLUG00000009938) #13	eef2b (ENSSLUG00000009959)	ENSSLUG00000009985	sirt6 (ENSSLUG00000010006)	ENSSLUG00000010036	cdc34b (ENSSLUG00000010043)	cactin (ENSSLUG00000010052)	sema4e (ENSSLUG00000010059)	stap2a (ENSSLUG00000010072)	sh3gl1a (ENSSLUG00000010082)	rorcb (ENSSLUG00000010091)
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
Gilthead seabream	MODERN SPECIES	13	stk11 (ENSSAUG00010017794)	SUGP1 (ENSSAUG00010017796)	rnf126 (ENSSAUG00010017802)	ENSSAUG00010017804	ENSSAUG00010017855	fzr1a (ENSSAUG00010017865)	plekhj1 (ENSSAUG00010018092) #7	sf3a2 (ENSSAUG00010018096)	ENSSAUG00010018101	ENSSAUG00010018105 ##21	ENSSAUG00010018106	ENSSAUG00010018110	ENSSAUG00010018114	ENSSAUG00010018118	map2k2b (ENSSAUG00010018128)	tcf3a (ENSSAUG00010018157) #22	UQCR11-B (ENSSAUG00010018172) #23	mbd3a (ENSSAUG00010018178) #24	MEX3D (ENSSAUG00010018182) #25	UNC13A (ENSSAUG00010018200)	BTBD2 (ENSSAUG00010018336) #13	eef2b (ENSSAUG00010018444)	ENSSAUG00010018573	ENSSAUG00010018574	sirt6 (ENSSAUG00010018575)	cdc34b (ENSSAUG00010018577)	cactin (ENSSAUG00010018579)	sema4e (ENSSAUG00010018580)	stap2a (ENSSAUG00010018581)	sh3gl1a (ENSSAUG00010018582)	rorcb (ENSSAUG00010018584)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656	ENSGT00530000063841.b.b	ENSGT00940000154737.c.g	ENSGT00940000164939.a.b
European seabass	MODERN SPECIES		ENSDLAG00005024979	NDUFA13 (ENSDLAG00005026360)	ENSDLAG00005030125	ENSDLAG00005024964	ENSDLAG00005033484	ENSDLAG00005024937	ENSDLAG00005024934	ENSDLAG00005024908	ENSDLAG00005024905	ENSDLAG00005024891	sf3a2 (ENSDLAG00005024886)	ENSDLAG00005024881	ENSDLAG00005024879 ##21	ENSDLAG00005024878	map2k2b (ENSDLAG00005024852)	tcf3a (ENSDLAG00005027974) #22	ENSDLAG00005027551 #25	ENSDLAG00005023147	ENSDLAG00005022958 #13	eef2b (ENSDLAG00005022862)	ENSDLAG00005029144	ENSDLAG00005022844	ENSDLAG00005022768	ENSDLAG00005029825	cactin (ENSDLAG00005022749)	sema4e (ENSDLAG00005022714)	sh3gl1a (ENSDLAG00005035038)	rorcb (ENSDLAG00005022683)	ENSDLAG00005029894	ENSDLAG00005022592	ENSDLAG00005022542 #17
Large yellow croaker	MODERN SPECIES	483	NDUFA13 (ENSLCRG00005006023)	cirbpa (ENSLCRG00005006025)	ENSLCRG00005006026	ENSLCRG00005006032	stk11 (ENSLCRG00005006034)	SUGP1 (ENSLCRG00005006036)	ENSLCRG00005006038	ENSLCRG00005006049	ENSLCRG00005006138	fzr1a (ENSLCRG00005002589)	plekhj1 (ENSLCRG00005002930) #7	sf3a2 (ENSLCRG00005002933)	ENSLCRG00005002935	ONECUT3 (ENSLCRG00005002937) ##21	map2k2b (ENSLCRG00005002947)	tcf3a (ENSLCRG00005003208) #22	ENSLCRG00005003230	UQCR11 (ENSLCRG00005003231) #23	mbd3a (ENSLCRG00005003234) #24	MEX3D (ENSLCRG00005003238) #25	UNC13A (ENSLCRG00005003340)	BTBD2 (ENSLCRG00005010807) #13	eef2b (ENSLCRG00005010825)	sirt6 (ENSLCRG00005011049)	ENSLCRG00005011056	ENSLCRG00005011060	cdc34b (ENSLCRG00005011061)	cactin (ENSLCRG00005011063)	sema4e (ENSLCRG00005011066)	stap2a (ENSLCRG00005011068)	sh3gl1a (ENSLCRG00005011071)
Otomorpha	ANCESTRAL SPECIES	201					ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a	ENSGT00940000160088	ENSGT00940000154716.hc.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a	ENSGT00940000158050
Otophysi	ANCESTRAL SPECIES	3	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT00940000161411	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT01030000234576.D.a.a.b.a.a.b.a.a	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d
Characiphysae	ANCESTRAL SPECIES	34	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT00940000161411	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT01030000234576.D.a.a.b.a.a.b.a.a	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739
Channel catfish	MODERN SPECIES	12	si:ch211-155e24.3 (ENSIPUG00000018973)	ENSIPUG00000018980	ENSIPUG00000018985	ENSIPUG00000018996	ENSIPUG00000019007	ENSIPUG00000019011	isyna1 (ENSIPUG00000019018)	Tpgs1 (ENSIPUG00000019039)	plekhj1 (ENSIPUG00000019044) #7	sf3a2 (ENSIPUG00000019071)	ENSIPUG00000019085	ENSIPUG00000019097	ONECUT3 (ENSIPUG00000019104) ##21	pias4b (ENSIPUG00000019122)	map2k2b (ENSIPUG00000019152)	tcf3a (ENSIPUG00000019252) #22	ENSIPUG00000019406	MBD3 (ENSIPUG00000019419) #24	MEX3D (ENSIPUG00000019444) #25	UNC13A (ENSIPUG00000019460)	btbd2 (ENSIPUG00000019506) #13	Armc6 (ENSIPUG00000019528)	slc25a42 (ENSIPUG00000019552)	Ncan (ENSIPUG00000019592)	tm6sf2 (ENSIPUG00000019656)	sbno2 (ENSIPUG00000019672)	ARHGAP45 (ENSIPUG00000019753)	polr2ea (ENSIPUG00000019801)	gpx4b (ENSIPUG00000019856)	PIP5K1C (ENSIPUG00000019881)	rab11bb (ENSIPUG00000019927)
Characiphysae_b	ANCESTRAL SPECIES	57	ENSGT00980000199858	ENSGT00940000157535.m.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299.b #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739
Characoidei	ANCESTRAL SPECIES	45	ENSGT00980000199858	ENSGT00940000157535.m.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299.b #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000159258.c
Mexicana tetra	MODERN SPECIES	8	ENSAMXG00000038866	ENSAMXG00000030414	ENSAMXG00000042671	ENSAMXG00000030982	ENSAMXG00000041260	ENSAMXG00000036071	ENSAMXG00000041952	ISYNA1 (ENSAMXG00000031770)	tpgs1 (ENSAMXG00000029816)	plekhj1 (ENSAMXG00000041405) #7	sf3a2 (ENSAMXG00000032428)	ENSAMXG00000044021	ENSAMXG00000006507 ##21	pias4b (ENSAMXG00000040409)	map2k2b (ENSAMXG00000032535)	tcf3a (ENSAMXG00000035851) #22	UQCR11 (ENSAMXG00000035427) #23	mbd3a (ENSAMXG00000041394) #24	MEX3D (ENSAMXG00000042500) #25	UNC13A (ENSAMXG00000017978)	BTBD2 (ENSAMXG00000006626) #13	eef2b (ENSAMXG00000006645)	ARMC6 (ENSAMXG00000006664)	slc25a42 (ENSAMXG00000006680)	ENSAMXG00000038802	tm6sf2a (ENSAMXG00000040821)	sbno2a (ENSAMXG00000018868)	ARHGAP45 (ENSAMXG00000018912)	POLR2E (ENSAMXG00000018915)	gpx4b (ENSAMXG00000041988)	PIP5K1C (ENSAMXG00000041140)
Red-bellied piranha	MODERN SPECIES	48	ENSPNAG00000027788	ENSPNAG00000027768	ENSPNAG00000027738	ENSPNAG00000027701	ENSPNAG00000027685	ENSPNAG00000027672	ISYNA1 (ENSPNAG00000027668)	tpgs1 (ENSPNAG00000027617)	plekhj1 (ENSPNAG00000027612) #7	sf3a2 (ENSPNAG00000027582)	ENSPNAG00000027575	ENSPNAG00000027546	ENSPNAG00000027526 ##21	pias4b (ENSPNAG00000027507)	map2k2b (ENSPNAG00000027497)	tcf3a (ENSPNAG00000027437) #22	UQCR11 (ENSPNAG00000027292) #23	mbd3a (ENSPNAG00000027268) #24	MEX3D (ENSPNAG00000027243) #25	ENSPNAG00000027188	BTBD2 (ENSPNAG00000027052) #13	eef2b (ENSPNAG00000027010)	ARMC6 (ENSPNAG00000006370)	slc25a42 (ENSPNAG00000026892)	ENSPNAG00000026808	tm6sf2a (ENSPNAG00000026691)	sbno2a (ENSPNAG00000026609)	ARHGAP45 (ENSPNAG00000026372)	POLR2E (ENSPNAG00000026263)	gpx4b (ENSPNAG00000026183)	PIP5K1C (ENSPNAG00000006737)
Electric eel	MODERN SPECIES	399	NCSTN (ENSEEEG00000016695)	fcer1gl (ENSEEEG00000016681)	ENSEEEG00000016678	ENSEEEG00000016621	ENSEEEG00000016607	ENSEEEG00000016603	ISYNA1 (ENSEEEG00000016595)	tpgs1 (ENSEEEG00000016591)	plekhj1 (ENSEEEG00000016590) #7	sf3a2 (ENSEEEG00000016587)	ENSEEEG00000016584	ONECUT3 (ENSEEEG00000016582) ##21	pias4b (ENSEEEG00000016580)	map2k2b (ENSEEEG00000016135)	ENSEEEG00000016119	tcf3a (ENSEEEG00000016117) #22	UQCR11 (ENSEEEG00000016115) #23	mbd3a (ENSEEEG00000016069) #24	MEX3D (ENSEEEG00000016066) #25	ENSEEEG00000016064	BTBD2 (ENSEEEG00000016046) #13	ARMC6 (ENSEEEG00000016041)	slc25a42 (ENSEEEG00000016040)
Cyprinoidei	ANCESTRAL SPECIES	114	ENSGT01100000263491.a.b.a.b.a.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT01030000234576.D.a.a.b.a.a.b.a.a	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b.a	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	366	ENSGT01100000263491.a.b.a.b.a.b	ENSGT00940000165396.B.s	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B.t.a	ENSGT01100000263495.A.a.b.b.a.a.a.b.a.a	ENSGT00390000018395.a	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823.k.a	ENSGT00940000164500.a.a.a	ENSGT00720000108823.k.b	ENSGT00940000164500.a.a.b	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b.b	ENSGT00940000157036.e.b.g #22	ENSGT00950000183005.b.a.a #24	ENSGT00940000162613.e #25	ENSGT00940000161905.b.a	ENSGT00940000159179.g.a #13
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2628																tcf3a (ENSCARG00000063765) #22	UQCR11 (ENSCARG00000063836) #23	ENSCARG00000063857 #24	MEX3D (ENSCARG00000063908) #25	ENSCARG00000063920
Goldfish	MODERN SPECIES	11	ARHGAP45 (ENSCARG00000003562)	POLR2E (ENSCARG00000003414)	gpx4b (ENSCARG00000003379)	PIP5K1C (ENSCARG00000003343)	rab11bb (ENSCARG00000003333)	CTXN1 (ENSCARG00000003328)	ENSCARG00000003318	ENSCARG00000003312	ENSCARG00000003306	ISYNA1 (ENSCARG00000003281)	plekhj1 (ENSCARG00000003264) #7	sf3a2 (ENSCARG00000003259)	ENSCARG00000003257	ONECUT3 (ENSCARG00000003254) ##21	pias4b (ENSCARG00000003249)	tcf3a (ENSCARG00000003229) #22	UQCR11 (ENSCARG00000003217) #23	ENSCARG00000003211 #24	MEX3D (ENSCARG00000003200) #25	ENSCARG00000001476	BTBD2 (ENSCARG00000001324) #13	ENSCARG00000001319	UBA52 (ENSCARG00000001315)	ENSCARG00000001299	upf1 (ENSCARG00000001254)	pgpep1 (ENSCARG00000001246)	jund (ENSCARG00000001240)	loxl5b (ENSCARG00000001231)	nmrk2 (ENSCARG00000001230)	ATCAY (ENSCARG00000001223)	cplx4c (ENSCARG00000001220)
Cyprininae_a	ANCESTRAL SPECIES	347	ENSGT00980000199858.b	ENSGT00940000157535.m.b.c	ENSGT01100000263491.a.b.a.b.a.b	ENSGT00940000165396.B.s	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B.t.a	ENSGT01100000263495.A.a.b.b.a.a.a.b.a.a	ENSGT00390000018395.a	ENSGT00500000045074	ENSGT00390000005235.h #7	ENSGT00720000108823.k.a	ENSGT00940000164500.a.a.a	ENSGT00950000183103.d.b.a.a.i ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.s.b.b	ENSGT00940000157036.e.b.g #22	ENSGT00950000183005.b.a.a #24	ENSGT00940000162613.e #25	ENSGT00940000161905.b.a	ENSGT00940000159179.g.a #13
Common carp reference	MODERN SPECIES	21	ENSCCRG00000058515	ENSCCRG00000054097	ENSCCRG00000042353	si:ch211-155e24.3 (ENSCCRG00000066415)	ENSCCRG00000040566	ENSCCRG00000069822	ENSCCRG00000040609	tpgs1 (ENSCCRG00000062131)	plekhj1 (ENSCCRG00000040625) #7	sf3a2 (ENSCCRG00000070094)	ENSCCRG00000064800	ENSCCRG00000063966	ENSCCRG00000029100 ##21	pias4b (ENSCCRG00000020596)	map2k2b (ENSCCRG00000020612)	tcf3a (ENSCCRG00000035505) #22	ENSCCRG00000079293 #24	MEX3D (ENSCCRG00000058664) #25	ENSCCRG00000039392	ENSCCRG00000035403 #13	eef2b (ENSCCRG00000035228)	ENSCCRG00000011585	slc25a42 (ENSCCRG00000080212)	ENSCCRG00000065346	tm6sf2a (ENSCCRG00000073164)	sbno2a (ENSCCRG00000020152)	ARHGAP45 (ENSCCRG00000012460)	ENSCCRG00000012408	gpx4b (ENSCCRG00000071825)	ENSCCRG00000045930	rab11bb (ENSCCRG00000000721)
Cyprininae	ANCESTRAL SPECIES	487															ENSGT00940000153487.b.a.s.b.a	ENSGT00940000157036.e.b.h #22	ENSGT01000000214836	ENSGT00950000183005.b.a.b #24	ENSGT00940000162613.f #25	ENSGT00940000161905.b.b	ENSGT00940000159179.g.b #13	ENSGT00940000154662.d.u	ENSGT00940000159261.d.a.a	ENSGT01030000234534.B.a.a.a.a.a.a.c	ENSGT00940000154716.hc.b	ENSGT00950000183112.b.a.a.a.a	ENSGT00940000162487.u.a	ENSGT00390000002629.ab	ENSGT00910000144271.A.b.f	ENSGT00910000144271.B.a.b.b.a.b	ENSGT00910000144271.B.a.b.b.b.b.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	19	ENSCARG00000007840	ENSCARG00000007855	ENSCARG00000007868	ENSCARG00000007876	ENSCARG00000007884	ENSCARG00000007894	ENSCARG00000007901	ISYNA1 (ENSCARG00000007917)	plekhj1 (ENSCARG00000007964) #7	sf3a2 (ENSCARG00000007972)	ENSCARG00000007980	ONECUT3 (ENSCARG00000007986) ##21	ENSCARG00000007994	ENSCARG00000008001	map2k2b (ENSCARG00000008010)	tcf3a (ENSCARG00000008083) #22	UQCR11 (ENSCARG00000008133) #23	mbd3a (ENSCARG00000008142) #24	MEX3D (ENSCARG00000008158) #25	UNC13A (ENSCARG00000008314)	BTBD2 (ENSCARG00000009449) #13	gpx4b (ENSCARG00000009457)	ENSCARG00000009474	ENSCARG00000009536	rab11bb (ENSCARG00000009876)	CTXN1 (ENSCARG00000009924)	ENSCARG00000009932	jund (ENSCARG00000009940)	pgpep1 (ENSCARG00000009948)	upf1 (ENSCARG00000009967)	HOMER3 (ENSCARG00000009993)
Goldfish	MODERN SPECIES	19	SUGP1 (ENSCARG00000004806)	PTPRS (ENSCARG00000004135)	FEM1A (ENSCARG00000003965)	ENSCARG00000003954	ENSCARG00000003923	ENSCARG00000003904	ENSCARG00000003888	ISYNA1 (ENSCARG00000017641)	plekhj1 (ENSCARG00000017621) #7	sf3a2 (ENSCARG00000017613)	ENSCARG00000017605	ENSCARG00000017598	ENSCARG00000017590	ONECUT3 (ENSCARG00000017584) ##21	ENSCARG00000017577	tcf3a (ENSCARG00000017386) #22	UQCR11 (ENSCARG00000017355) #23	mbd3a (ENSCARG00000017288) #24	trim55a (ENSCARG00000017258)	VCPIP1 (ENSCARG00000017241)	ENSCARG00000017232	ENSCARG00000017222	gbp1 (ENSCARG00000017159)	gbp1 (ENSCARG00000017071)	ENSCARG00000017040	gbp1 (ENSCARG00000016699)	ENSCARG00000016599	ebi3 (ENSCARG00000016579)	odf3l2a (ENSCARG00000016565)	keap1a (ENSCARG00000016555)	crlf1a (ENSCARG00000016527)
Cyprininae_a	ANCESTRAL SPECIES	59	ENSGT00950000182991.A.b.a.b	ENSGT01100000263538.A.a.a.b.a.d.e.a	ENSGT00390000014633.a.b	ENSGT00980000199858.a	ENSGT00940000157535.m.b.d	ENSGT00940000165396.B.t.b	ENSGT01100000263495.A.a.b.b.a.a.a.b.a.b	ENSGT00390000012355.A.b	ENSGT00390000018395.b	ENSGT00390000005235.g #7	ENSGT00720000108823.l	ENSGT00940000164500.a.b	ENSGT00940000164500.a.a.b	ENSGT00950000183103.d.b.a.a.j ##21	ENSGT00940000153487.b.a.s.b.a	ENSGT00940000157036.e.b.h #22	ENSGT00950000183005.b.a.b #24	ENSGT00940000162613.f #25	ENSGT00940000161905.b.b	ENSGT00940000159179.g.b #13	ENSGT00940000154662.d.u	ENSGT00390000002913	ENSGT00940000158163.a.b	ENSGT00940000158649.a.b.a.a	ENSGT00390000012913.a.a.c	ENSGT00940000159946.h.a	ENSGT00950000183110.b.a.d.b	ENSGT00940000161913.d.a.b	ENSGT00940000159258.c.b	ENSGT00940000163126.a.a.a.a	ENSGT00940000154412.C.c.a.a
Common carp reference	MODERN SPECIES	29	fcer1gl (ENSCCRG00000040516)	ENSCCRG00000071475	ENSCCRG00000082820	ENSCCRG00000069403	ENSCCRG00000026464	ENSCCRG00000062737	sf3a2 (ENSCCRG00000040628)	plekhj1 (ENSCCRG00000064151) #7	ENSCCRG00000020966	ONECUT3 (ENSCCRG00000020970) ##21	ENSCCRG00000079964	ENSCCRG00000079287	ENSCCRG00000073979	ENSCCRG00000062410	map2k2b (ENSCCRG00000014252)	tcf3a (ENSCCRG00000035581) #22	mbd3a (ENSCCRG00000035518) #24	ENSCCRG00000055311	eef2b (ENSCCRG00000064570)	MEX3D (ENSCCRG00000055684) #25	ENSCCRG00000070880	ENSCCRG00000014462 #13	ENSCCRG00000035161	slc25a42 (ENSCCRG00000082753)	ENSCCRG00000001521	tm6sf2a (ENSCCRG00000061917)	sbno2a (ENSCCRG00000078397)	ENSCCRG00000022982	gpx4b (ENSCCRG00000058980)	ENSCCRG00000037725	rab11bb (ENSCCRG00000003636)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	455			ENSSGRG00000054296	ENSSGRG00000054336	ENSSGRG00000054337	ENSSGRG00000054338	ENSSGRG00000000121	ENSSGRG00000000124	ENSSGRG00000000126	ISYNA1 (ENSSGRG00000000134)	plekhj1 (ENSSGRG00000000148) #7	sf3a2 (ENSSGRG00000000165)	ENSSGRG00000000180	ENSSGRG00000000191 ##21	map2k2b (ENSSGRG00000000219)	tcf3a (ENSSGRG00000000322) #22	ENSSGRG00000000377 #24	MEX3D (ENSSGRG00000000455) #25	BTBD2 (ENSSGRG00000000457) #13	eef2b (ENSSGRG00000000497)	ARMC6 (ENSSGRG00000001841)	slc25a42 (ENSSGRG00000001842)	ENSSGRG00000001845	tm6sf2a (ENSSGRG00000001851)	sbno2a (ENSSGRG00000001866)	ARHGAP45 (ENSSGRG00000002091)	gpx4b (ENSSGRG00000002092)	ENSSGRG00000002108	rab11bb (ENSSGRG00000004582)	CTXN1 (ENSSGRG00000004684)	ENSSGRG00000004686
Golden-line barbel	MODERN SPECIES	2113															ENSSGRG00000016402	tcf3a (ENSSGRG00000016403) #22	mbd3a (ENSSGRG00000016406) #24
Zebrafish	MODERN SPECIES	11	fcer1gl (ENSDARG00000104077)	ENSDARG00000103148	si:ch211-155e24.3 (ENSDARG00000105127)	ENSDARG00000074846	ENSDARG00000079930	ENSDARG00000092766	ENSDARG00000038476	tpgs1 (ENSDARG00000027547)	plekhj1 (ENSDARG00000025593) #7	sf3a2 (ENSDARG00000021107)	ENSDARG00000095024	ENSDARG00000067815	ONECUT3 (ENSDARG00000091059) ##21	pias4b (ENSDARG00000042215)	map2k2b (ENSDARG00000068918)	tcf3a (ENSDARG00000005915) #22	mbd3a (ENSDARG00000061774) #24	BTBD2 (ENSDARG00000104653) #13	eef2b (ENSDARG00000100371)	ARMC6 (ENSDARG00000103770)	slc25a42 (ENSDARG00000099368)	ENSDARG00000115552	tm6sf2a (ENSDARG00000105208)	sbno2a (ENSDARG00000098801)	ARHGAP45 (ENSDARG00000052496)	POLR2E (ENSDARG00000074274)	gpx4b (ENSDARG00000076836)	PIP5K1C (ENSDARG00000100313)	rab11bb (ENSDARG00000090086)	ctxn1 (ENSDARG00000113270)	ENSDARG00000018619
Clupeiformes	ANCESTRAL SPECIES	177															ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT01000000214836	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a	ENSGT00940000160088	ENSGT00940000154716.hc.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a	ENSGT00940000158050	ENSGT00390000009230.b
Denticle herring	MODERN SPECIES	14	per2 (ENSDCDG00000030438)	hes6 (ENSDCDG00000030425)	itm2cb (ENSDCDG00000030421)	lpar5a (ENSDCDG00000030419)	GPR55 (ENSDCDG00000030418)	gigyf2 (ENSDCDG00000030413)	ENSDCDG00000030408	ENSDCDG00000030406	ENSDCDG00000030405	ENSDCDG00000030403	crygn1 (ENSDCDG00000030401)	ACVR2B (ENSDCDG00000029001)	ENSDCDG00000028958	scn12aa (ENSDCDG00000028915)	map2k2b (ENSDCDG00000028530)	tcf3a (ENSDCDG00000028515) #22	ENSDCDG00000028511	mbd3a (ENSDCDG00000028507) #24	MEX3D (ENSDCDG00000028502) #25	UNC13A (ENSDCDG00000023562)	BTBD2 (ENSDCDG00000023410) #13	eef2b (ENSDCDG00000023176)	ENSDCDG00000023174	ENSDCDG00000023172	RXFP3 (ENSDCDG00000023171)	sirt6 (ENSDCDG00000023165)	ENSDCDG00000022621	HSD11B1L (ENSDCDG00000022481)	ENSDCDG00000022463	ENSDCDG00000022346	rnf126 (ENSDCDG00000022336)
Atlantic herring	MODERN SPECIES	17	sirt6 (ENSCHAG00000006454)	ENSCHAG00000006579	ENSCHAG00000006656	ENSCHAG00000006677	ENSCHAG00000006695	ENSCHAG00000006726	ENSCHAG00000006732	ENSCHAG00000006753	ENSCHAG00000006781	ENSCHAG00000006809	ENSCHAG00000006844	ENSCHAG00000006973	ENSCHAG00000007102	ENSCHAG00000007248	ENSCHAG00000007271	ENSCHAG00000000842 #22	zpr1 (ENSCHAG00000001273)	ENSCHAG00000001282	mbd3a (ENSCHAG00000001357) #24	zpr1 (ENSCHAG00000002035)	ENSCHAG00000002047	MEX3D (ENSCHAG00000002074) #25	UNC13A (ENSCHAG00000002242)	ENSCHAG00000005433	ACVR2B (ENSCHAG00000005509)	scn12aa (ENSCHAG00000007432)	ENSCHAG00000007620	ENSCHAG00000007645	ENSCHAG00000007674	ENSCHAG00000007878	ENSCHAG00000007892
Osteoglossiformes	ANCESTRAL SPECIES	72	ENSGT00940000156569.a.b.a.b	ENSGT00390000008279.b.l	ENSGT00940000165458	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00940000159808.j	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT01030000234539.a.a.a.e	ENSGT00940000153487.b.a.t	ENSGT00940000166752.b	ENSGT00940000157036.e.b #22	ENSGT00940000162613.d #25	ENSGT00940000154662.d.d.b.a	ENSGT00940000159261.d.b	ENSGT00940000160088	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.b.a	ENSGT00950000183112.b.a.a.b.b	ENSGT00940000162487	ENSGT00950000182925.C.a.a	ENSGT00940000161721.h	ENSGT00940000156523.b.f	ENSGT00940000159142.t	ENSGT00940000157113.b	ENSGT00940000161332.e
Asian bonytongue	MODERN SPECIES	17	ENSSFOG00015011186	keap1a (ENSSFOG00015025073)	zgc:110158 (ENSSFOG00015011080)	ENSSFOG00015031291	ELL (ENSSFOG00015026649)	ISYNA1 (ENSSFOG00015010978)	plekhj1 (ENSSFOG00015025381) #7	sf3a2 (ENSSFOG00015033304)	oaz1a (ENSSFOG00015010906)	ENSSFOG00015025090	ENSSFOG00015030242	ONECUT3 (ENSSFOG00015024703) ##21	pias4b (ENSSFOG00015010810)	MAP2K2 (ENSSFOG00015028124)	ENSSFOG00015029384	tcf3a (ENSSFOG00015010645) #22	ENSSFOG00015010547	eef2b (ENSSFOG00015010432)	CREB3L3 (ENSSFOG00015010395)	sirt6 (ENSSFOG00015028025)	CELF5 (ENSSFOG00015010315)	HSD11B1L (ENSSFOG00015010301)	ENSSFOG00015010276	FGF22 (ENSSFOG00015010264)	HCN2 (ENSSFOG00015010200)	ENSSFOG00015010250	bsg (ENSSFOG00015028160)	rnf126 (ENSSFOG00015010159)	FSTL3 (ENSSFOG00015027716)	SUGP1 (ENSSFOG00015010075)	stk11 (ENSSFOG00015010043)
P. kingsleyae	MODERN SPECIES	57	ENSPKIG00000011925	ENSPKIG00000011903	ppp1r7 (ENSPKIG00000011862)	ubxn7 (ENSPKIG00000011801)	ENSPKIG00000011763	ENSPKIG00000011737	PSMD2 (ENSPKIG00000011651)	ENSPKIG00000011576	AP2M1 (ENSPKIG00000011484)	pcyt1ab (ENSPKIG00000011434)	zgc:92744 (ENSPKIG00000011400)	SUCNR1 (ENSPKIG00000011391)	PIAS4 (ENSPKIG00000011366)	MAP2K2 (ENSPKIG00000011327)	ENSPKIG00000011310	tcf3a (ENSPKIG00000011233) #22	MEX3D (ENSPKIG00000011176) #25	eef2b (ENSPKIG00000011101)	ENSPKIG00000011068	sirt6 (ENSPKIG00000011041)	ENSPKIG00000010998	rgmd (ENSPKIG00000010968)	HSD11B1L (ENSPKIG00000010947)	ENSPKIG00000010931	FGF22 (ENSPKIG00000010914)	HCN2 (ENSPKIG00000010869)	bsg (ENSPKIG00000010826)	ENSPKIG00000010809	ENSPKIG00000010799	SUGP1 (ENSPKIG00000010747)	stk11 (ENSPKIG00000010702)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Clupeocephala	ANCESTRAL SPECIES	125	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000157036.e.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00950000182925.C.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	64	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00950000183103.d.b.a.b ##21	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000157036.e.a #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Poecilia	ANCESTRAL SPECIES	16	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235 #7	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a ##21	ENSGT00940000157036.f #22	ENSGT00940000157036.e.b #22	ENSGT00390000018299 #23	ENSGT00950000183005.b.a #24	ENSGT00940000162613 #25	ENSGT00940000161905.b	ENSGT00940000159179.g #13	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B	ENSGT00940000165656.e	ENSGT00530000063841.b.b
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000157036.f #22
Sailfin molly	DUPLICATION
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	3856																ENSPLAG00000013660 #22
Sailfin molly	MODERN SPECIES	926										ENSPLAG00000010153	fzr1a (ENSPLAG00000010141)	plekhj1 (ENSPLAG00000010073) #7	sf3a2 (ENSPLAG00000010052)	ENSPLAG00000010033	ENSPLAG00000000617 ##21	ENSPLAG00000009991 #22
Sailfin molly	MODERN SPECIES	3906																ENSPLAG00000023369 #22
Guppy	MODERN SPECIES	447	ENSPREG00000018100	NDUFA13 (ENSPREG00000018070)	cirbpa (ENSPREG00000018042)	ENSPREG00000018014	stk11 (ENSPREG00000018001)	SUGP1 (ENSPREG00000017966)	rnf126 (ENSPREG00000017938)	ENSPREG00000017898	ENSPREG00000017889	ENSPREG00000017875	fzr1a (ENSPREG00000017856)	plekhj1 (ENSPREG00000017830) #7	sf3a2 (ENSPREG00000017808)	ENSPREG00000017796	ONECUT3 (ENSPREG00000017782) ##21	ENSPREG00000017774 #22	UQCR11 (ENSPREG00000017764) #23	mbd3a (ENSPREG00000017747) #24	MEX3D (ENSPREG00000017736) #25	UNC13A (ENSPREG00000017708)	BTBD2 (ENSPREG00000017668) #13	eef2b (ENSPREG00000017633)	ENSPREG00000017618	sirt6 (ENSPREG00000017600)	ENSPREG00000017592	cactin (ENSPREG00000017563)	otol1a (ENSPREG00000017545)	ENSPREG00000017535	tal1 (ENSPREG00000017524)	RC3H1 (ENSPREG00000017502)	zgc:110366 (ENSPREG00000017483)