Pecora ANCESTRAL SPECIES ENSGT00390000013467 #9 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00950000183003.a.a.a.a.b ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00940000162150 #17 ENSGT00390000010706 #16 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00950000185823 ENSGT00940000158590 ENSGT00940000160463 #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299 #13 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475 #31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 Percora_a ANCESTRAL SPECIES ENSGT00390000013467 #9 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00950000183003.a.a.a.a.b ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00940000162150 #17 ENSGT00390000010706 #16 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00950000185823 ENSGT00940000158590 ENSGT00940000160463 #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299.bb #23 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475 #31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 Bovidae ANCESTRAL SPECIES ENSGT00390000013467 #9 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00950000183003.a.a.a.a.b ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00940000162150 #17 ENSGT00390000010706 #16 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00950000185823 ENSGT00940000158590 ENSGT00940000160463 #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299.bb #23 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475.ac ##31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 Caprinae ANCESTRAL SPECIES 3 ENSGT00950000182974.a.a.b #8 ENSGT00390000013467 #9 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00390000018299.cb #13 ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00390000010706 #16 ENSGT00940000162150 #17 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00940000158590 ENSGT00940000160463 #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299.bb #23 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475.ac ##31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 Rambouillet Sheep MODERN SPECIES 21 ZCCHC10 (ENSOARG00020021393) #7 AFF4 (ENSOARG00020021183) #8 LEAP2 (ENSOARG00020021152) #9 UQCRQ (ENSOARG00020021124) #10 GDF9 (ENSOARG00020021050) #11 SHROOM1 (ENSOARG00020020980) #12 ENSOARG00020020953 #13 BTBD2 (ENSOARG00020020888) #14 CSNK1G2 (ENSOARG00020020862) #15 ADAT3 (ENSOARG00020020822) #16 SCAMP4 (ENSOARG00020020721) #17 ABHD17A (ENSOARG00020020656) #18 ENSOARG00020020598 #19 ATP8B3 (ENSOARG00020019584) #20 ONECUT3 (ENSOARG00020019503) #21 TCF3 (ENSOARG00020018273) #22 ENSOARG00020018193 #23 MBD3 (ENSOARG00020018029) #24 MEX3D (ENSOARG00020017996) #25 ADAMTSL5 (ENSOARG00020017613) #26 REEP6 (ENSOARG00020017523) #27 PCSK4 (ENSOARG00020016665) #28 C19orf25 (ENSOARG00020016595) #29 APC2 (ENSOARG00020016161) #30 ENSOARG00020016079 #31 DAZAP1 (ENSOARG00020015974) #32 GAMT (ENSOARG00020015902) #33 NDUFS7 (ENSOARG00020015840) #34 PWWP3A (ENSOARG00020015787) #35 EFNA2 (ENSOARG00020015712) #36 FAM174C (ENSOARG00020015682) #37 Goat MODERN SPECIES 26 ZCCHC10 (ENSCHIG00000021529) #7 AFF4 (ENSCHIG00000015153) #8 LEAP2 (ENSCHIG00000006437) #9 UQCRQ (ENSCHIG00000017488) #10 GDF9 (ENSCHIG00000008167) #11 SHROOM1 (ENSCHIG00000018420) #12 ENSCHIG00000023876 ENSCHIG00000010758 BTBD2 (ENSCHIG00000025498) #14 CSNK1G2 (ENSCHIG00000012053) #15 SCAMP4 (ENSCHIG00000026658) #17 ABHD17A (ENSCHIG00000017282) #18 KLF16 (ENSCHIG00000010020) #19 REXO1 (ENSCHIG00000021165) ATP8B3 (ENSCHIG00000016005) #20 TCF3 (ENSCHIG00000012431) #22 UQCR11 (ENSCHIG00000008372) #23 MBD3 (ENSCHIG00000024579) #24 MEX3D (ENSCHIG00000012929) #25 ENSCHIG00000023770 ENSCHIG00000017961 #26 ENSCHIG00000010385 #26 REEP6 (ENSCHIG00000025412) #27 PCSK4 (ENSCHIG00000017924) #28 C19orf25 (ENSCHIG00000015419) #29 APC2 (ENSCHIG00000017061) #30 ENSCHIG00000023211 ##31 DAZAP1 (ENSCHIG00000024694) #32 GAMT (ENSCHIG00000009917) #33 NDUFS7 (ENSCHIG00000008587) #34 PWWP3A (ENSCHIG00000021735) #35 Bovinae ANCESTRAL SPECIES 2 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00950000183003.a.a.a.a.b ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00940000162150 #17 ENSGT00390000010706 #16 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00950000185823 ENSGT00940000158590 ENSGT00940000160463.r #20 ENSGT00940000160463.q #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299.bb #23 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475.ac ##31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 American bison MODERN SPECIES 3121 AFF4 (ENSBBBG00000007509) #8 LEAP2 (ENSBBBG00000018954) #9 UQCRQ (ENSBBBG00000004808) #10 GDF9 (ENSBBBG00000018948) #11 SHROOM1 (ENSBBBG00000004801) #12 BTBD2 (ENSBBBG00000004795) #14 CSNK1G2 (ENSBBBG00000018897) #15 SCAMP4 (ENSBBBG00000018882) #17 ADAT3 (ENSBBBG00000018851) #16 ABHD17A (ENSBBBG00000018838) #18 ENSBBBG00000004740 #19 ENSBBBG00000018815 ENSBBBG00000018805 ENSBBBG00000009151 #20 ENSBBBG00000004709 #20 TCF3 (ENSBBBG00000004690) #22 UQCR11 (ENSBBBG00000018581) #23 MBD3 (ENSBBBG00000004588) #24 ENSBBBG00000004581 ADAMTSL5 (ENSBBBG00000004574) #26 REEP6 (ENSBBBG00000018528) #27 PCSK4 (ENSBBBG00000004562) #28 C19orf25 (ENSBBBG00000018509) #29 APC2 (ENSBBBG00000018500) #30 ENSBBBG00000018471 ##31 DAZAP1 (ENSBBBG00000004531) #32 GAMT (ENSBBBG00000018451) #33 NDUFS7 (ENSBBBG00000004517) #34 PWWP3A (ENSBBBG00000004507) #35 EFNA2 (ENSBBBG00000018411) #36 FAM174C (ENSBBBG00000008938) #37 Bos ANCESTRAL SPECIES 3 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00950000183003.a.a.a.a.b ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00940000162150 #17 ENSGT00390000010706 #16 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00950000185823 ENSGT00940000158590 ENSGT00940000160463.r #20 ENSGT00940000160463.q #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299.bb #23 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475.ac ##31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 Bos_b ANCESTRAL SPECIES 2 ENSGT00730000111200 #7 ENSGT00950000182974.a.a.b #8 ENSGT00390000013467 #9 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00940000162150 #17 ENSGT00390000010706 #16 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00940000158590 ENSGT00940000160463.q #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299.bb #23 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475.ac ##31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 Cow MODERN SPECIES 26 HSPA4 (ENSBTAG00000015683) ZCCHC10 (ENSBTAG00000030616) #7 AFF4 (ENSBTAG00000009482) #8 LEAP2 (ENSBTAG00000018926) #9 UQCRQ (ENSBTAG00000009479) #10 GDF9 (ENSBTAG00000009478) #11 SHROOM1 (ENSBTAG00000014676) #12 BTBD2 (ENSBTAG00000016108) #14 CSNK1G2 (ENSBTAG00000016797) #15 SCAMP4 (ENSBTAG00000045762) #17 ABHD17A (ENSBTAG00000025277) #18 KLF16 (ENSBTAG00000038055) #19 REXO1 (ENSBTAG00000020232) ATP8B3 (ENSBTAG00000020229) #20 ONECUT3 (ENSBTAG00000047578) #21 TCF3 (ENSBTAG00000008695) #22 UQCR11 (ENSBTAG00000008692) #23 MBD3 (ENSBTAG00000038409) #24 MEX3D (ENSBTAG00000040334) #25 ENSBTAG00000012150 ADAMTSL5 (ENSBTAG00000046263) #26 REEP6 (ENSBTAG00000002311) #27 PCSK4 (ENSBTAG00000002305) #28 C7H19orf25 (ENSBTAG00000051357) #29 APC2 (ENSBTAG00000015433) #30 RPS15 (ENSBTAG00000019718) #31 DAZAP1 (ENSBTAG00000019714) #32 GAMT (ENSBTAG00000004112) #33 NDUFS7 (ENSBTAG00000019419) #34 PWWP3A (ENSBTAG00000030839) #35 EFNA2 (ENSBTAG00000038221) #36 Hybrid Bos Indicus MODERN SPECIES 26 ZCCHC10 (ENSBIXG00005009861) #7 AFF4 (ENSBIXG00005009834) #8 LEAP2 (ENSBIXG00005000606) #9 UQCRQ (ENSBIXG00005000603) #10 ENSBIXG00005009763 SHROOM1 (ENSBIXG00005009751) #12 BTBD2 (ENSBIXG00005006410) #14 CSNK1G2 (ENSBIXG00005009637) #15 SCAMP4 (ENSBIXG00005009612) #17 ADAT3 (ENSBIXG00005009585) #16 ABHD17A (ENSBIXG00005000539) #18 KLF16 (ENSBIXG00005009542) #19 REXO1 (ENSBIXG00005009514) ATP8B3 (ENSBIXG00005009458) #20 ONECUT3 (ENSBIXG00005009373) #21 TCF3 (ENSBIXG00005009347) #22 UQCR11 (ENSBIXG00005000460) #23 MBD3 (ENSBIXG00005000445) #24 MEX3D (ENSBIXG00005009245) #25 ENSBIXG00005000436 ADAMTSL5 (ENSBIXG00005000429) #26 REEP6 (ENSBIXG00005000422) #27 PCSK4 (ENSBIXG00005009196) #28 C19orf25 (ENSBIXG00005009184) #29 APC2 (ENSBIXG00005009161) #30 RPS15 (ENSBIXG00005009132) ##31 DAZAP1 (ENSBIXG00005009054) #32 GAMT (ENSBIXG00005009015) #33 ENSBIXG00005008985 #34 PWWP3A (ENSBIXG00005000323) #35 ENSBIXG00005000319 #36 Bos_a ANCESTRAL SPECIES 2 ENSGT00390000013467 #9 ENSGT00390000004029 #10 ENSGT00940000159784 #11 ENSGT00940000160656 #12 ENSGT00950000183003.a.a.a.a.b ENSGT00940000159179 #14 ENSGT00940000156470 #15 ENSGT00940000162150 #17 ENSGT00940000155854 #18 ENSGT00940000163280 #19 ENSGT00950000185823 ENSGT00940000158590 ENSGT00940000160463.r #20 ENSGT00940000160463.q #20 ENSGT00950000183103.d.b #21 ENSGT00940000157036 #22 ENSGT00390000018299.bb #23 ENSGT00950000183005.b.d #24 ENSGT00940000162613 #25 ENSGT00940000162321 ENSGT00940000160456 #26 ENSGT00940000161493 #27 ENSGT00940000161989 #28 ENSGT00390000007991 #29 ENSGT00530000063749.c.a #30 ENSGT00390000000475.ac ##31 ENSGT00940000156757 #32 ENSGT00390000018061 #33 ENSGT00390000006565 #34 ENSGT00390000001700.a.a #35 ENSGT00940000160040.B #36 Domestic yak MODERN SPECIES 27 GDF9 (ENSBGRG00000000431) #11 SHROOM1 (ENSBGRG00000000396) #12 SOWAHA (ENSBGRG00000018725) ENSBGRG00000018649 #14 ENSBGRG00000018562 #14 CSNK1G2 (ENSBGRG00000018491) #15 ENSBGRG00000018385 #17 ENSBGRG00000018347 ABHD17A (ENSBGRG00000018270) #18 ENSBGRG00000018212 #19 ENSBGRG00000018133 ENSBGRG00000017850 ENSBGRG00000017775 #20 ENSBGRG00000017718 #20 ONECUT3 (ENSBGRG00000017622) #21 TCF3 (ENSBGRG00000017293) #22 UQCR11 (ENSBGRG00000017215) #23 MBD3 (ENSBGRG00000016990) #24 MEX3D (ENSBGRG00000016912) #25 ENSBGRG00000016857 ADAMTSL5 (ENSBGRG00000016801) #26 REEP6 (ENSBGRG00000016730) #27 PCSK4 (ENSBGRG00000016652) #28 ENSBGRG00000016616 #29 APC2 (ENSBGRG00000016072) #30 RPS15 (ENSBGRG00000015856) ##31 DAZAP1 (ENSBGRG00000015677) #32 GAMT (ENSBGRG00000015533) #33 NDUFS7 (ENSBGRG00000015309) #34 PWWP3A (ENSBGRG00000015207) #35 ENSBGRG00000015098 #36 Wild yak MODERN SPECIES 321 LEAP2 (ENSBMUG00000002519) #9 ENSBMUG00000002537 #10 GDF9 (ENSBMUG00000002563) #11 SHROOM1 (ENSBMUG00000002597) #12 BTBD2 (ENSBMUG00000002669) #14 CSNK1G2 (ENSBMUG00000002714) #15 SCAMP4 (ENSBMUG00000002748) #17 ABHD17A (ENSBMUG00000002786) #18 ENSBMUG00000002805 #19 ENSBMUG00000002816 ENSBMUG00000002836 ATP8B3 (ENSBMUG00000002908) #20 TCF3 (ENSBMUG00000003152) #22 UQCR11 (ENSBMUG00000003220) #23 MBD3 (ENSBMUG00000003285) #24 Siberian musk deer MODERN SPECIES 49 ZCCHC10 (ENSMMSG00000015618) #7 AFF4 (ENSMMSG00000015669) #8 LEAP2 (ENSMMSG00000015759) #9 UQCRQ (ENSMMSG00000015786) #10 GDF9 (ENSMMSG00000015798) #11 SHROOM1 (ENSMMSG00000015817) #12 ENSMMSG00000015926 #13 BTBD2 (ENSMMSG00000015949) #14 CSNK1G2 (ENSMMSG00000015996) #15 SCAMP4 (ENSMMSG00000016040) #17 ABHD17A (ENSMMSG00000016084) #18 KLF16 (ENSMMSG00000016148) #19 REXO1 (ENSMMSG00000016192) ATP8B3 (ENSMMSG00000016278) #20 ONECUT3 (ENSMMSG00000016423) #21 TCF3 (ENSMMSG00000016463) #22 ENSMMSG00000016694 #23 MBD3 (ENSMMSG00000016718) #24 MEX3D (ENSMMSG00000016790) #25 ENSMMSG00000016838 ADAMTSL5 (ENSMMSG00000016856) #26 REEP6 (ENSMMSG00000016902) #27 PCSK4 (ENSMMSG00000016961) #28 C19orf25 (ENSMMSG00000017161) #29 APC2 (ENSMMSG00000017190) #30 ENSMMSG00000017271 #31 DAZAP1 (ENSMMSG00000017306) #32 GAMT (ENSMMSG00000017365) #33 NDUFS7 (ENSMMSG00000017433) #34 PWWP3A (ENSMMSG00000017461) #35 EFNA2 (ENSMMSG00000017476) #36 Yarkand deer MODERN SPECIES 32 HSPA4 (ENSCHYG00000013342) ENSCHYG00000013195 #7 AFF4 (ENSCHYG00000012961) #8 LEAP2 (ENSCHYG00000012912) #9 UQCRQ (ENSCHYG00000012886) #10 GDF9 (ENSCHYG00000012848) #11 SHROOM1 (ENSCHYG00000012543) #12 SOWAHA (ENSCHYG00000012503) BTBD2 (ENSCHYG00000012402) #14 CSNK1G2 (ENSCHYG00000012240) #15 SCAMP4 (ENSCHYG00000012163) #17 ABHD17A (ENSCHYG00000012056) #18 ENSCHYG00000012027 #19 REXO1 (ENSCHYG00000011774) ATP8B3 (ENSCHYG00000011251) #20 TCF3 (ENSCHYG00000010747) #22 MBD3 (ENSCHYG00000010565) #24 MEX3D (ENSCHYG00000010512) #25 ENSCHYG00000010460 ADAMTSL5 (ENSCHYG00000010336) #26 REEP6 (ENSCHYG00000010281) #27 PCSK4 (ENSCHYG00000010186) #28 ENSCHYG00000010126 #29 APC2 (ENSCHYG00000009962) #30 ENSCHYG00000009799 #31 DAZAP1 (ENSCHYG00000009522) #32 GAMT (ENSCHYG00000009404) #33 NDUFS7 (ENSCHYG00000009337) #34 PWWP3A (ENSCHYG00000009248) #35 EFNA2 (ENSCHYG00000009190) #36 FAM174C (ENSCHYG00000009148) #37