Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000158313 #22
Sarcopterygii	ANCESTRAL SPECIES	770																ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24
Tetrapoda	ANCESTRAL SPECIES	26																ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000154610.e.b #28	ENSGT00390000008169	ENSGT00940000160612.c.a ##31	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00940000161279	ENSGT00940000163886.B.a	ENSGT00940000158675	ENSGT00940000160528	ENSGT00940000158240
Amniota	ANCESTRAL SPECIES	30	ENSGT00390000010523.d	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000161446	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00960000186993	ENSGT00940000156263	ENSGT00940000154786 #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00390000008169	ENSGT00940000160612.c.a ##31
Mammalia	ANCESTRAL SPECIES	31	ENSGT01030000234528.B.b.a.a.a #7	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00940000161279	ENSGT00940000161838	ENSGT00940000154026	ENSGT00940000162337
Theria	ANCESTRAL SPECIES	2	ENSGT01030000234528.B.b.a.a.a #7	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Eutheria	ANCESTRAL SPECIES	1	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Primates	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT01080000258859	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000148021	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT01080000258859	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000148021	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT01080000258859	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.r.a #35
Vervet Monkey	MODERN SPECIES	2	CELA1 (ENSCSAG00000005892) #7	ENSCSAG00000005895 #8	SMAGP (ENSCSAG00000005898) #9	DAZAP2 (ENSCSAG00000005901) #10	ENSCSAG00000005904 #11	TFCP2 (ENSCSAG00000005909) #12	CSRNP2 (ENSCSAG00000005912) #13	LETMD1 (ENSCSAG00000005918) #14	SLC11A2 (ENSCSAG00000005939) #15	HIGD1C (ENSCSAG00000005946) #16	METTL7A (ENSCSAG00000005949) #17	ATF1 (ENSCSAG00000005951) #18	DIP2B (ENSCSAG00000005956) #19	LARP4 (ENSCSAG00000005967) #20	ENSCSAG00000005971 #21	LIMA1 (ENSCSAG00000005975) #22	CERS5 (ENSCSAG00000005979) #23	COX14 (ENSCSAG00000019254) #24	GPD1 (ENSCSAG00000005984) #25	SMARCD1 (ENSCSAG00000005990) #26	ASIC1 (ENSCSAG00000005996) #27	RACGAP1 (ENSCSAG00000006020) #28	AQP6 (ENSCSAG00000006032) #29	AQP5 (ENSCSAG00000006036) #30	AQP2 (ENSCSAG00000006042) #31	FAIM2 (ENSCSAG00000006046) #32	BCDIN3D (ENSCSAG00000006048) #33	NCKAP5L (ENSCSAG00000006051) #34	TMBIM6 (ENSCSAG00000006054) #35	ENSCSAG00000019253 #36	FMNL3 (ENSCSAG00000006061) #37
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT01080000258859	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00910000147121	ENSGT00940000154610.e.b #28	ENSGT00910000147836	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT01080000258859	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00910000147121	ENSGT00940000154610.e.b #28	ENSGT00910000147836	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT01080000258859	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00910000147121	ENSGT00940000154610.e.b #28	ENSGT00910000147836	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT00940000154978.i.a
Sooty mangabey	MODERN SPECIES	571	BIN2 (ENSCATG00000037877)	DAZAP2 (ENSCATG00000013180) #10	SMAGP (ENSCATG00000038432) #9	POU6F1 (ENSCATG00000036476) #11	TFCP2 (ENSCATG00000035625) #12	CSRNP2 (ENSCATG00000041885) #13	LETMD1 (ENSCATG00000029210) #14	SLC11A2 (ENSCATG00000031317) #15	HIGD1C (ENSCATG00000036630) #16	METTL7A (ENSCATG00000038652) #17	TMPRSS12 (ENSCATG00000008857)	ATF1 (ENSCATG00000034998) #18	DIP2B (ENSCATG00000031892) #19	LARP4 (ENSCATG00000044528) #20	FAM186A (ENSCATG00000015807) #21	LIMA1 (ENSCATG00000038898) #22	CERS5 (ENSCATG00000035482) #23	GPD1 (ENSCATG00000023693) #25	SMARCD1 (ENSCATG00000011963) #26	ASIC1 (ENSCATG00000030053) #27	ENSCATG00000031613	RACGAP1 (ENSCATG00000023977) #28	AQP6 (ENSCATG00000031304) #29	ENSCATG00000036515	AQP5 (ENSCATG00000029951) #30	AQP2 (ENSCATG00000035395) #31	FAIM2 (ENSCATG00000035599) #32	ENSCATG00000044213	BCDIN3D (ENSCATG00000044648) #33	NCKAP5L (ENSCATG00000035514) #34	ENSCATG00000038799
Drill	MODERN SPECIES	235	DAZAP2 (ENSMLEG00000038258) #10	SMAGP (ENSMLEG00000031395) #9	POU6F1 (ENSMLEG00000043184) #11	TFCP2 (ENSMLEG00000030638) #12	CSRNP2 (ENSMLEG00000041452) #13	LETMD1 (ENSMLEG00000039305) #14	SLC11A2 (ENSMLEG00000008420) #15	ENSMLEG00000043041	HIGD1C (ENSMLEG00000028703) #16	METTL7A (ENSMLEG00000032507) #17	TMPRSS12 (ENSMLEG00000038354)	ATF1 (ENSMLEG00000029861) #18	DIP2B (ENSMLEG00000032298) #19	LARP4 (ENSMLEG00000039661) #20	FAM186A (ENSMLEG00000038156) #21	LIMA1 (ENSMLEG00000040850) #22	CERS5 (ENSMLEG00000044318) #23	GPD1 (ENSMLEG00000040740) #25	SMARCD1 (ENSMLEG00000030186) #26	ASIC1 (ENSMLEG00000028142) #27	ENSMLEG00000028141	RACGAP1 (ENSMLEG00000040110) #28	AQP6 (ENSMLEG00000035173) #29	ENSMLEG00000037821	AQP5 (ENSMLEG00000041250) #30	AQP2 (ENSMLEG00000039967) #31	FAIM2 (ENSMLEG00000028759) #32	ENSMLEG00000026463	ENSMLEG00000039842	BCDIN3D (ENSMLEG00000008159) #33	NCKAP5L (ENSMLEG00000010405) #34
Olive baboon	MODERN SPECIES	19	BIN2 (ENSPANG00000010380)	SMAGP (ENSPANG00000046055) #9	DAZAP2 (ENSPANG00000017307) #10	POU6F1 (ENSPANG00000023758) #11	TFCP2 (ENSPANG00000019744) #12	CSRNP2 (ENSPANG00000026023) #13	LETMD1 (ENSPANG00000015332) #14	SLC11A2 (ENSPANG00000010381) #15	HIGD1C (ENSPANG00000019745) #16	METTL7A (ENSPANG00000012631) #17	TMPRSS12 (ENSPANG00000015830)	ATF1 (ENSPANG00000033486) #18	DIP2B (ENSPANG00000025343) #19	LARP4 (ENSPANG00000022964) #20	ENSPANG00000045646	LIMA1 (ENSPANG00000013989) #22	CERS5 (ENSPANG00000015566) #23	COX14 (ENSPANG00000039764) #24	GPD1 (ENSPANG00000000381) #25	SMARCD1 (ENSPANG00000004051) #26	ASIC1 (ENSPANG00000019747) #27	RACGAP1 (ENSPANG00000018322) #28	AQP6 (ENSPANG00000047509) #29	AQP5 (ENSPANG00000005854) #30	AQP2 (ENSPANG00000013990) #31	FAIM2 (ENSPANG00000034066) #32	BCDIN3D (ENSPANG00000045726) #33	NCKAP5L (ENSPANG00000008378) #34	TMBIM6 (ENSPANG00000007284) #35	ENSPANG00000033501 ##36	FMNL3 (ENSPANG00000015333) #37
Macaca	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a.e.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00910000147836	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.q ##35	ENSGT00940000154978.i.a
Pig-tailed macaque	MODERN SPECIES	196														ENSMNEG00000025092	FAM186A (ENSMNEG00000004456) #21	LIMA1 (ENSMNEG00000045489) #22	CERS5 (ENSMNEG00000006332) #23	GPD1 (ENSMNEG00000017038) #25	SMARCD1 (ENSMNEG00000044865) #26	ASIC1 (ENSMNEG00000040991) #27	RACGAP1 (ENSMNEG00000044161) #28	AQP6 (ENSMNEG00000044454) #29	ENSMNEG00000034059	AQP5 (ENSMNEG00000032433) #30	AQP2 (ENSMNEG00000038948) #31	FAIM2 (ENSMNEG00000029516) #32	ENSMNEG00000031574	BCDIN3D (ENSMNEG00000029191) #33	NCKAP5L (ENSMNEG00000030526) #34	ENSMNEG00000040412	ENSMNEG00000044447 #35
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a.e.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00910000146814	ENSGT00800000124303.g	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.q ##35
Rhesus	MODERN SPECIES	2	SMAGP (ENSMMUG00000064406) #9	DAZAP2 (ENSMMUG00000001884) #10	POU6F1 (ENSMMUG00000044229) #11	TFCP2 (ENSMMUG00000000152) #12	CSRNP2 (ENSMMUG00000012457) #13	LETMD1 (ENSMMUG00000012453) #14	SLC11A2 (ENSMMUG00000022961) #15	HIGD1C (ENSMMUG00000037566) #16	METTL7A (ENSMMUG00000018485) #17	TMPRSS12 (ENSMMUG00000018484)	ATF1 (ENSMMUG00000054294) #18	DIP2B (ENSMMUG00000010565) #19	LARP4 (ENSMMUG00000008172) #20	ENSMMUG00000051371	ENSMMUG00000004895	CERS5 (ENSMMUG00000016471) #22	ENSMMUG00000065304	GPD1 (ENSMMUG00000006532) #25	SMARCD1 (ENSMMUG00000006531) #26	ASIC1 (ENSMMUG00000006529) #27	RACGAP1 (ENSMMUG00000021689) #28	AQP6 (ENSMMUG00000021688) #29	AQP5 (ENSMMUG00000058855) #30	AQP2 (ENSMMUG00000038256) #31	FAIM2 (ENSMMUG00000022913) #32	NCKAP5L (ENSMMUG00000006255) #34	TMBIM6 (ENSMMUG00000005960) ##35	FMNL3 (ENSMMUG00000022498) #37	PRPF40B (ENSMMUG00000022495)	FAM186B (ENSMMUG00000022493)	MCRS1 (ENSMMUG00000011098)
Crab-eating macaque	MODERN SPECIES	2	TFCP2 (ENSMFAG00000002003) #12	CSRNP2 (ENSMFAG00000061964) #13	ENSMFAG00000059803	LETMD1 (ENSMFAG00000035824) #14	SLC11A2 (ENSMFAG00000003818) #15	HIGD1C (ENSMFAG00000004051) #16	METTL7A (ENSMFAG00000031547) #17	TMPRSS12 (ENSMFAG00000015375)	ATF1 (ENSMFAG00000000109) #18	DIP2B (ENSMFAG00000031797) #19	ENSMFAG00000064106	LARP4 (ENSMFAG00000043681) #20	ENSMFAG00000052368	ENSMFAG00000064666	FAM186A (ENSMFAG00000031313) #21	LIMA1 (ENSMFAG00000002376) #22	CERS5 (ENSMFAG00000043342) #23	ENSMFAG00000063331	ENSMFAG00000061354	GPD1 (ENSMFAG00000031489) #25	SMARCD1 (ENSMFAG00000000413) #26	ASIC1 (ENSMFAG00000035165) #27	RACGAP1 (ENSMFAG00000022656) #28	AQP6 (ENSMFAG00000003316) #29	ENSMFAG00000064589	AQP5 (ENSMFAG00000032827) #30	AQP2 (ENSMFAG00000042087) #31	ENSMFAG00000050869	FAIM2 (ENSMFAG00000043955) #32	BCDIN3D (ENSMFAG00000038249) #33	NCKAP5L (ENSMFAG00000031813) #34
Rhinopithecus	ANCESTRAL SPECIES	4	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c.b #20	ENSGT00940000163376 #21	ENSGT00940000154409.c.a.b #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00910000147121	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000148021	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.r.a #35
Black snub-nosed monkey	MODERN SPECIES	751																LIMA1 (ENSRBIG00000026725) #22	ENSRBIG00000038015	ASXL1 (ENSRBIG00000032135)	NOL4L (ENSRBIG00000040392)	ENSRBIG00000037083	COMMD7 (ENSRBIG00000029627)	ENSRBIG00000040209	MAPRE1 (ENSRBIG00000042693)	EFCAB8 (ENSRBIG00000043449)	SUN5 (ENSRBIG00000030532)	BPIFB2 (ENSRBIG00000034361)	BPIFB6 (ENSRBIG00000024079)	BPIFB3 (ENSRBIG00000036953)	BPIFB4 (ENSRBIG00000032341)	BPIFA2 (ENSRBIG00000015461)	ENSRBIG00000028643
Golden snub-nosed monkey	MODERN SPECIES	2523	DAZAP2 (ENSRROG00000036730) #10	SMAGP (ENSRROG00000043228) #9	POU6F1 (ENSRROG00000039640) #11	TFCP2 (ENSRROG00000037242) #12	CSRNP2 (ENSRROG00000040690) #13	LETMD1 (ENSRROG00000042683) #14	SLC11A2 (ENSRROG00000041968) #15	HIGD1C (ENSRROG00000029420) #16	METTL7A (ENSRROG00000031885) #17	TMPRSS12 (ENSRROG00000039539)	ATF1 (ENSRROG00000031939) #18	DIP2B (ENSRROG00000039026) #19	ENSRROG00000042764 #20	ENSRROG00000044481	ENSRROG00000028380	LIMA1 (ENSRROG00000031617) #22	CERS5 (ENSRROG00000011401) #23	GPD1 (ENSRROG00000045156) #25	SMARCD1 (ENSRROG00000020699) #26	ASIC1 (ENSRROG00000034828) #27	ENSRROG00000041449	RACGAP1 (ENSRROG00000007543) #28	AQP6 (ENSRROG00000006046) #29	AQP5 (ENSRROG00000031086) #30	AQP2 (ENSRROG00000004857) #31	FAIM2 (ENSRROG00000030595) #32	ENSRROG00000000081	ENSRROG00000027078	ENSRROG00000035778	BCDIN3D (ENSRROG00000024941) #33	NCKAP5L (ENSRROG00000040594) #34
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT01080000258859	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000148021	ENSGT00910000146932	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Hominidae	ANCESTRAL SPECIES	4	ENSGT00950000182882.A.a.e.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00950000182882.A.a.e.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Gorilla	MODERN SPECIES	3	BIN2 (ENSGGOG00000009423)	DAZAP2 (ENSGGOG00000026861) #10	SMAGP (ENSGGOG00000006815) #9	POU6F1 (ENSGGOG00000000227) #11	ENSGGOG00000023546 #12	CSRNP2 (ENSGGOG00000010425) #13	LETMD1 (ENSGGOG00000012094) #14	SLC11A2 (ENSGGOG00000008973) #15	HIGD1C (ENSGGOG00000012313) #16	METTL7A (ENSGGOG00000037230) #17	TMPRSS12 (ENSGGOG00000004170)	ATF1 (ENSGGOG00000038474) #18	DIP2B (ENSGGOG00000004319) #19	LARP4 (ENSGGOG00000015230) #20	FAM186A (ENSGGOG00000016543) #21	LIMA1 (ENSGGOG00000007975) #22	CERS5 (ENSGGOG00000009137) #23	ENSGGOG00000004317	GPD1 (ENSGGOG00000011860) #25	SMARCD1 (ENSGGOG00000013355) #26	ASIC1 (ENSGGOG00000004133) #27	RACGAP1 (ENSGGOG00000002573) #28	AQP6 (ENSGGOG00000005905) #29	AQP5 (ENSGGOG00000005898) #30	AQP2 (ENSGGOG00000005897) #31	FAIM2 (ENSGGOG00000006671) #32	ENSGGOG00000040523	ENSGGOG00000043961	NCKAP5L (ENSGGOG00000016321) #34	TMBIM6 (ENSGGOG00000008786) #35	FMNL3 (ENSGGOG00000001582) #37
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a.e.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Pan	ANCESTRAL SPECIES	4	ENSGT00950000182882.A.a.e.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.b #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00910000146814	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00910000146932	ENSGT00390000016972.a.a.b.b.b.a.b.c	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35
Bonobo	MODERN SPECIES	3	BIN2 (ENSPPAG00000024686)	DAZAP2 (ENSPPAG00000041139) #10	SMAGP (ENSPPAG00000042183) #9	POU6F1 (ENSPPAG00000029916) #11	TFCP2 (ENSPPAG00000008309) #12	CSRNP2 (ENSPPAG00000043252) #13	LETMD1 (ENSPPAG00000038763) #14	SLC11A2 (ENSPPAG00000038498) #15	HIGD1C (ENSPPAG00000035023) #16	METTL7A (ENSPPAG00000038196) #17	TMPRSS12 (ENSPPAG00000039011)	ATF1 (ENSPPAG00000038540) #18	DIP2B (ENSPPAG00000027672) #19	LARP4 (ENSPPAG00000035100) #20	ENSPPAG00000038991 #21	LIMA1 (ENSPPAG00000038984) #22	CERS5 (ENSPPAG00000035094) #23	ENSPPAG00000026220	GPD1 (ENSPPAG00000035089) #25	SMARCD1 (ENSPPAG00000032789) #26	ENSPPAG00000037367 #27	RACGAP1 (ENSPPAG00000043091) #28	AQP6 (ENSPPAG00000043622) #29	AQP5 (ENSPPAG00000038003) #30	AQP2 (ENSPPAG00000042981) #31	FAIM2 (ENSPPAG00000043254) #32	ENSPPAG00000035640	ENSPPAG00000038852	BCDIN3D (ENSPPAG00000019278) #33	NCKAP5L (ENSPPAG00000018344) #34	TMBIM6 (ENSPPAG00000033561) #35
Chimpanzee	MODERN SPECIES	3	BIN2 (ENSPTRG00000004954)	DAZAP2 (ENSPTRG00000004952) #10	SMAGP (ENSPTRG00000049002) #9	POU6F1 (ENSPTRG00000004950) #11	TFCP2 (ENSPTRG00000004949) #12	CSRNP2 (ENSPTRG00000004948) #13	LETMD1 (ENSPTRG00000004947) #14	SLC11A2 (ENSPTRG00000004946) #15	HIGD1C (ENSPTRG00000043137) #16	METTL7A (ENSPTRG00000004944) #17	TMPRSS12 (ENSPTRG00000004942)	ATF1 (ENSPTRG00000004941) #18	DIP2B (ENSPTRG00000004938) #19	LARP4 (ENSPTRG00000004935) #20	ENSPTRG00000052700	LIMA1 (ENSPTRG00000004928) #22	CERS5 (ENSPTRG00000004927) #23	GPD1 (ENSPTRG00000004925) #25	SMARCD1 (ENSPTRG00000004924) #26	ASIC1 (ENSPTRG00000004923) #27	RACGAP1 (ENSPTRG00000004921) #28	AQP6 (ENSPTRG00000004920) #29	AQP5 (ENSPTRG00000004919) #30	AQP2 (ENSPTRG00000050440) #31	FAIM2 (ENSPTRG00000004917) #32	ENSPTRG00000052323	ENSPTRG00000046927	BCDIN3D (ENSPTRG00000004916) #33	NCKAP5L (ENSPTRG00000023249) #34	TMBIM6 (ENSPTRG00000004914) #35	FMNL3 (ENSPTRG00000004913) #37
Human	MODERN SPECIES	3	BIN2 (ENSG00000110934)	SMAGP (ENSG00000170545) #9	DAZAP2 (ENSG00000183283) #10	POU6F1 (ENSG00000184271) #11	TFCP2 (ENSG00000135457) #12	CSRNP2 (ENSG00000110925) #13	LETMD1 (ENSG00000050426) #14	SLC11A2 (ENSG00000110911) #15	HIGD1C (ENSG00000214511) #16	METTL7A (ENSG00000185432) #17	TMPRSS12 (ENSG00000186452)	ATF1 (ENSG00000123268) #18	DIP2B (ENSG00000066084) #19	LARP4 (ENSG00000161813) #20	FAM186A (ENSG00000185958) #21	LIMA1 (ENSG00000050405) #22	CERS5 (ENSG00000139624) #23	COX14 (ENSG00000178449) #24	GPD1 (ENSG00000167588) #25	SMARCD1 (ENSG00000066117) #26	ASIC1 (ENSG00000110881) #27	RACGAP1 (ENSG00000161800) #28	AQP6 (ENSG00000086159) #29	AQP5 (ENSG00000161798) #30	AQP2 (ENSG00000167580) #31	FAIM2 (ENSG00000135472) #32	BCDIN3D (ENSG00000186666) #33	NCKAP5L (ENSG00000167566) #34	TMBIM6 (ENSG00000139644) #35	FMNL3 (ENSG00000161791) #37	FAM186B (ENSG00000135436)
Orangutan	MODERN SPECIES	3	BIN2 (ENSPPYG00000004526)	ENSPPYG00000004525 #9	DAZAP2 (ENSPPYG00000004524) #10	POU6F1 (ENSPPYG00000004523) #11	ENSPPYG00000032849	TFCP2 (ENSPPYG00000004522) #12	CSRNP2 (ENSPPYG00000004521) #13	LETMD1 (ENSPPYG00000004520) #14	SLC11A2 (ENSPPYG00000004519) #15	ENSPPYG00000038364 #17	TMPRSS12 (ENSPPYG00000004516)	ATF1 (ENSPPYG00000004515) #18	DIP2B (ENSPPYG00000004514) #19	LARP4 (ENSPPYG00000004512) #20	ENSPPYG00000033639	LIMA1 (ENSPPYG00000004510) #22	CERS5 (ENSPPYG00000004509) #23	COX14 (ENSPPYG00000004508) #24	GPD1 (ENSPPYG00000004507) #25	SMARCD1 (ENSPPYG00000004505) #26	ASIC1 (ENSPPYG00000004504) #27	RACGAP1 (ENSPPYG00000004503) #28	ENSPPYG00000004501 #30	AQP2 (ENSPPYG00000038280) #31	FAIM2 (ENSPPYG00000004499) #32	BCDIN3D (ENSPPYG00000004498) #33	NCKAP5L (ENSPPYG00000004496) #34	TMBIM6 (ENSPPYG00000004495) #35	FMNL3 (ENSPPYG00000004493) #37	PRPF40B (ENSPPYG00000004492)	FAM186B (ENSPPYG00000004491)
Gibbon	MODERN SPECIES	23	DAZAP2 (ENSNLEG00000031850) #10	SMAGP (ENSNLEG00000017775) #9	POU6F1 (ENSNLEG00000017777) #11	TFCP2 (ENSNLEG00000017779) #12	CSRNP2 (ENSNLEG00000029302) #13	LETMD1 (ENSNLEG00000035257) #14	SLC11A2 (ENSNLEG00000017784) #15	ENSNLEG00000034534	HIGD1C (ENSNLEG00000017789) #16	METTL7A (ENSNLEG00000017790) #17	TMPRSS12 (ENSNLEG00000017792)	ATF1 (ENSNLEG00000017793) #18	DIP2B (ENSNLEG00000017794) #19	LARP4 (ENSNLEG00000017798) #20	ENSNLEG00000017800	LIMA1 (ENSNLEG00000017802) #22	ENSNLEG00000017804 #23	GPD1 (ENSNLEG00000017806) #25	SMARCD1 (ENSNLEG00000017808) #26	ENSNLEG00000031706	ASIC1 (ENSNLEG00000029021) #27	RACGAP1 (ENSNLEG00000017810) #28	AQP6 (ENSNLEG00000017814) #29	AQP2 (ENSNLEG00000017815) #31	ENSNLEG00000017817 #32	ENSNLEG00000029168	ENSNLEG00000029950	BCDIN3D (ENSNLEG00000017818) #33	NCKAP5L (ENSNLEG00000017819) #34	ENSNLEG00000017820 #35	FMNL3 (ENSNLEG00000017822) #37
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.a.a ##10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629.r #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Cebidae	ANCESTRAL SPECIES	2	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685.o.a.a ##10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629.r #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00390000010077 #9	ENSGT00390000000685.o.a.a.a ##10	ENSGT00390000000685.o.a.a.b ##10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.c #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00940000156629.r #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b	ENSGT00940000162031
Capuchin	MODERN SPECIES	181	SMAGP (ENSCCAG00000002693) #9	ENSCCAG00000034722 ##10	POU6F1 (ENSCCAG00000023239) #11	TFCP2 (ENSCCAG00000035842) #12	CSRNP2 (ENSCCAG00000032771) #13	LETMD1 (ENSCCAG00000001496) #14	SLC11A2 (ENSCCAG00000021047) #15	HIGD1C (ENSCCAG00000030818) #16	METTL7A (ENSCCAG00000033453) #17	ENSCCAG00000025709	TMPRSS12 (ENSCCAG00000031125)	ATF1 (ENSCCAG00000026329) #18	DIP2B (ENSCCAG00000033298) #19	LARP4 (ENSCCAG00000024439) #20	FAM186A (ENSCCAG00000030948) #21	LIMA1 (ENSCCAG00000020365) #22	CERS5 (ENSCCAG00000033001) #23	GPD1 (ENSCCAG00000029995) #25	SMARCD1 (ENSCCAG00000033779) #26	ASIC1 (ENSCCAG00000030999) #27	RACGAP1 (ENSCCAG00000036642) #28	AQP6 (ENSCCAG00000035363) #29	AQP5 (ENSCCAG00000028095) #30	AQP2 (ENSCCAG00000021499) #31	FAIM2 (ENSCCAG00000035820) #32	BCDIN3D (ENSCCAG00000029244) #33	NCKAP5L (ENSCCAG00000031139) #34	TMBIM6 (ENSCCAG00000035742) #35	FMNL3 (ENSCCAG00000016612) #37	PRPF40B (ENSCCAG00000030147)	ENSCCAG00000005419
Bolivian squirrel monkey	MODERN SPECIES	153	ENSSBOG00000029344 ##10	POU6F1 (ENSSBOG00000022176) #11	TFCP2 (ENSSBOG00000012958) #12	CSRNP2 (ENSSBOG00000020225) #13	LETMD1 (ENSSBOG00000020472) #14	ENSSBOG00000025805	SLC11A2 (ENSSBOG00000029524) #15	ENSSBOG00000026501	METTL7A (ENSSBOG00000023898) #17	TMPRSS12 (ENSSBOG00000031130)	ATF1 (ENSSBOG00000021700) #18	DIP2B (ENSSBOG00000021026) #19	LARP4 (ENSSBOG00000026650) #20	FAM186A (ENSSBOG00000020587) #21	ENSSBOG00000021850	LIMA1 (ENSSBOG00000004806) #22	CERS5 (ENSSBOG00000034177) #23	GPD1 (ENSSBOG00000001677) #25	SMARCD1 (ENSSBOG00000014040) #26	ASIC1 (ENSSBOG00000034628) #27	RACGAP1 (ENSSBOG00000026138) #28	AQP6 (ENSSBOG00000035612) #29	AQP5 (ENSSBOG00000030707) #30	AQP2 (ENSSBOG00000026086) #31	FAIM2 (ENSSBOG00000020121) #32	BCDIN3D (ENSSBOG00000035511) #33	NCKAP5L (ENSSBOG00000028145) #34	TMBIM6 (ENSSBOG00000024527) #35	FMNL3 (ENSSBOG00000026511) #37	PRPF40B (ENSSBOG00000025670)	ENSSBOG00000027018
Marmoset	MODERN SPECIES	21	CSRNP2 (ENSCJAG00000086711) #13	LETMD1 (ENSCJAG00000017564) #14	ENSCJAG00000083028 #15	ENSCJAG00000068487	ENSCJAG00000021689 #15	ENSCJAG00000058293 #16	ENSCJAG00000076104	ENSCJAG00000044461 #17	TMPRSS12 (ENSCJAG00000086687)	ENSCJAG00000071793 #16	ENSCJAG00000076455 #17	ATF1 (ENSCJAG00000043330) #18	DIP2B (ENSCJAG00000021142) #19	LARP4 (ENSCJAG00000021131) #20	ENSCJAG00000021122	LIMA1 (ENSCJAG00000021115) #22	ENSCJAG00000038932	CERS5 (ENSCJAG00000039684) #23	COX14 (ENSCJAG00000072013) #24	GPD1 (ENSCJAG00000021089) #25	SMARCD1 (ENSCJAG00000021079) #26	ASIC1 (ENSCJAG00000021071) #27	RACGAP1 (ENSCJAG00000021058) #28	AQP6 (ENSCJAG00000021055) #29	AQP5 (ENSCJAG00000070257) #30	AQP2 (ENSCJAG00000021049) #31	FAIM2 (ENSCJAG00000021045) #32	NCKAP5L (ENSCJAG00000046299) #34	ENSCJAG00000021032 #35	FMNL3 (ENSCJAG00000021023) #37	PRPF40B (ENSCJAG00000020982)
Mas night monkey	MODERN SPECIES	1029					ENSANAG00000024169	SLC11A2 (ENSANAG00000033449) #15	HIGD1C (ENSANAG00000030406) #16	ENSANAG00000023970	METTL7A (ENSANAG00000035861) #17	TMPRSS12 (ENSANAG00000026837)	ATF1 (ENSANAG00000033502) #18	DIP2B (ENSANAG00000032064) #19	LARP4 (ENSANAG00000029342) #20	ENSANAG00000020925	ENSANAG00000036201	LIMA1 (ENSANAG00000034316) #22	CERS5 (ENSANAG00000034838) #23	GPD1 (ENSANAG00000024396) #25	ENSANAG00000026495 #26	ASIC1 (ENSANAG00000027378) #27	RACGAP1 (ENSANAG00000036327) #28	AQP6 (ENSANAG00000022283) #29	AQP5 (ENSANAG00000034159) #30	AQP2 (ENSANAG00000027846) #31	FAIM2 (ENSANAG00000027329) #32	BCDIN3D (ENSANAG00000038086) #33	NCKAP5L (ENSANAG00000024395) #34	TMBIM6 (ENSANAG00000025342) #35	FMNL3 (ENSANAG00000034262) #37	PRPF40B (ENSANAG00000029854)	ENSANAG00000035924
Tarsier	MODERN SPECIES	5151																LIMA1 (ENSTSYG00000001948) #22	CERS5 (ENSTSYG00000007489) #23	GPD1 (ENSTSYG00000026461) #25	SMARCD1 (ENSTSYG00000001906) #26	ASIC1 (ENSTSYG00000027151) #27	RACGAP1 (ENSTSYG00000007197) #28	AQP6 (ENSTSYG00000031893) #29	AQP5 (ENSTSYG00000029641) #30	AQP2 (ENSTSYG00000026687) #31	FAIM2 (ENSTSYG00000014045) #32	BCDIN3D (ENSTSYG00000001190) #33	NCKAP5L (ENSTSYG00000027065) #34	TMBIM6 (ENSTSYG00000030688) #35
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Lemuriformes_a	ANCESTRAL SPECIES	8	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Greater bamboo lemur	MODERN SPECIES	250																LIMA1 (ENSPSMG00000004328) #22	CERS5 (ENSPSMG00000004255) #23	COX14 (ENSPSMG00000004213) #24	GPD1 (ENSPSMG00000004190) #25	SMARCD1 (ENSPSMG00000004148) #26	ASIC1 (ENSPSMG00000004049) #27	RACGAP1 (ENSPSMG00000003943) #28	AQP6 (ENSPSMG00000003838) #29	AQP5 (ENSPSMG00000003829) #30	AQP2 (ENSPSMG00000003807) #31	ENSPSMG00000003797
Coquerels sifaka	MODERN SPECIES	91	POU6F1 (ENSPCOG00000020545) #11	TFCP2 (ENSPCOG00000026562) #12	CSRNP2 (ENSPCOG00000014145) #13	LETMD1 (ENSPCOG00000014754) #14	ENSPCOG00000021473 #15	ENSPCOG00000018158 #15	HIGD1C (ENSPCOG00000025367) #16	METTL7A (ENSPCOG00000024184) #17	ENSPCOG00000020301	TMPRSS12 (ENSPCOG00000014801)	ATF1 (ENSPCOG00000025429) #18	DIP2B (ENSPCOG00000019428) #19	LARP4 (ENSPCOG00000026291) #20	ENSPCOG00000014557	FAM186A (ENSPCOG00000019884) #21	LIMA1 (ENSPCOG00000025292) #22	CERS5 (ENSPCOG00000005534) #23	GPD1 (ENSPCOG00000028459) #25	SMARCD1 (ENSPCOG00000026807) #26	ASIC1 (ENSPCOG00000021809) #27	RACGAP1 (ENSPCOG00000017940) #28	AQP6 (ENSPCOG00000001175) #29	AQP5 (ENSPCOG00000000865) #30	AQP2 (ENSPCOG00000019564) #31	FAIM2 (ENSPCOG00000013476) #32	BCDIN3D (ENSPCOG00000025127) #33	NCKAP5L (ENSPCOG00000001081) #34	TMBIM6 (ENSPCOG00000023018) #35	FMNL3 (ENSPCOG00000017512) #37	PRPF40B (ENSPCOG00000027705)	FAM186B (ENSPCOG00000024952)
Mouse lemur	MODERN SPECIES	29	ENSMICG00000012880	ENSMICG00000017243 #15	ENSMICG00000017248 #15	HIGD1C (ENSMICG00000044696) #16	METTL7A (ENSMICG00000033526) #17	ENSMICG00000043558	TMPRSS12 (ENSMICG00000014455)	ATF1 (ENSMICG00000003301) #18	ENSMICG00000043979	DIP2B (ENSMICG00000005057) #19	ENSMICG00000046094	ENSMICG00000012388 #20	FAM186A (ENSMICG00000035471) #21	ENSMICG00000017886	ENSMICG00000034794	LIMA1 (ENSMICG00000015696) #22	CERS5 (ENSMICG00000015675) #23	GPD1 (ENSMICG00000015665) #25	SMARCD1 (ENSMICG00000015651) #26	ASIC1 (ENSMICG00000015635) #27	RACGAP1 (ENSMICG00000015618) #28	AQP6 (ENSMICG00000038503) #29	AQP5 (ENSMICG00000015604) #30	AQP2 (ENSMICG00000036745) #31	FAIM2 (ENSMICG00000015588) #32	BCDIN3D (ENSMICG00000031908) #33	NCKAP5L (ENSMICG00000005160) #34	ENSMICG00000026577 #35	FMNL3 (ENSMICG00000005219) #37	PRPF40B (ENSMICG00000005196)	FAM186B (ENSMICG00000027100)
Bushbaby	MODERN SPECIES	158	DAZAP2 (ENSOGAG00000007977) #10	POU6F1 (ENSOGAG00000007973) #11	TFCP2 (ENSOGAG00000007969) #12	CSRNP2 (ENSOGAG00000007966) #13	LETMD1 (ENSOGAG00000007963) #14	SLC11A2 (ENSOGAG00000000214) #15	ENSOGAG00000000213 #17	ENSOGAG00000009474 #17	TMPRSS12 (ENSOGAG00000034766)	ENSOGAG00000000212	ATF1 (ENSOGAG00000026029) #18	DIP2B (ENSOGAG00000005189) #19	LARP4 (ENSOGAG00000001415) #20	ENSOGAG00000029433 #21	ENSOGAG00000007391	LIMA1 (ENSOGAG00000004671) #22	CERS5 (ENSOGAG00000004668) #23	COX14 (ENSOGAG00000004667) #24	GPD1 (ENSOGAG00000004665) #25	ENSOGAG00000004662 #26	ASIC1 (ENSOGAG00000004661) #27	ENSOGAG00000015732	LCP1 (ENSOGAG00000012043)	CPB2 (ENSOGAG00000012039)	ZC3H13 (ENSOGAG00000012032)	SIAH3 (ENSOGAG00000033062)	CBY2 (ENSOGAG00000029836)	ENSOGAG00000016040	COG3 (ENSOGAG00000016033)	SLC25A30 (ENSOGAG00000011571)	ENSOGAG00000031453
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35
Tree shrew	MODERN SPECIES	5527															ENSTBEG00000006774	LIMA1 (ENSTBEG00000006211) #22	CERS5 (ENSTBEG00000005683) #23	COX14 (ENSTBEG00000005088) #24	SMARCD1 (ENSTBEG00000004795) #26	ENSTBEG00000003778 #27
Glires	ANCESTRAL SPECIES	4	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35
Lagomorpha	ANCESTRAL SPECIES	81															ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Pika	MODERN SPECIES	213															ENSOPRG00000003541	LIMA1 (ENSOPRG00000003509) #22	CERS5 (ENSOPRG00000003483) #23	GPD1 (ENSOPRG00000003460) #25	SMARCD1 (ENSOPRG00000003426) #26	ASIC1 (ENSOPRG00000003393) #27
Rabbit	MODERN SPECIES	15	POU6F1 (ENSOCUG00000013207) #11	ENSOCUG00000021265	TFCP2 (ENSOCUG00000009026) #12	CSRNP2 (ENSOCUG00000009020) #13	LETMD1 (ENSOCUG00000009014) #14	SLC11A2 (ENSOCUG00000007767) #15	HIGD1C (ENSOCUG00000037967) #16	METTL7A (ENSOCUG00000015622) #17	TMPRSS12 (ENSOCUG00000012144)	ENSOCUG00000026872 #20	ENSOCUG00000038596	DIP2B (ENSOCUG00000012013) #19	ATF1 (ENSOCUG00000017023) #18	ENSOCUG00000035833	ENSOCUG00000035149 #21	LIMA1 (ENSOCUG00000012851) #22	CERS5 (ENSOCUG00000012843) #23	COX14 (ENSOCUG00000034485) #24	SMARCD1 (ENSOCUG00000015715) #26	ASIC1 (ENSOCUG00000015699) #27	RACGAP1 (ENSOCUG00000015681) #28	AQP6 (ENSOCUG00000004641) #29	AQP2 (ENSOCUG00000004635) #31	FAIM2 (ENSOCUG00000011476) #32	BCDIN3D (ENSOCUG00000001545) #33	NCKAP5L (ENSOCUG00000001851) #34	TMBIM6 (ENSOCUG00000001847) #35	FMNL3 (ENSOCUG00000001754) #37	PRPF40B (ENSOCUG00000001750)	ENSOCUG00000003332	MCRS1 (ENSOCUG00000016821)
Rodentia	ANCESTRAL SPECIES	5	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Muroidea	ANCESTRAL SPECIES	31	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT01100000263763	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT01100000263763	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Golden Hamster	MODERN SPECIES	626	Smagp (ENSMAUG00000013509) #9	Dazap2 (ENSMAUG00000019659) #10	Pou6f1 (ENSMAUG00000019512) #11	Tfcp2 (ENSMAUG00000015118) #12	Csrnp2 (ENSMAUG00000013590) #13	Letmd1 (ENSMAUG00000012925) #14	Slc11a2 (ENSMAUG00000015999) #15	Higd1c (ENSMAUG00000015723) #16	ENSMAUG00000010677	ENSMAUG00000021530 #17	Tmprss12 (ENSMAUG00000021386)	Atf1 (ENSMAUG00000019644) #18	Dip2b (ENSMAUG00000016394) #19	Larp4 (ENSMAUG00000012844) #20	ENSMAUG00000011781	Lima1 (ENSMAUG00000011493) #22	Cox14 (ENSMAUG00000011751) #24	Gpd1 (ENSMAUG00000011436) #25	Smarcd1 (ENSMAUG00000019411) #26	Asic1 (ENSMAUG00000018938) #27	ENSMAUG00000013978 #28	Aqp6 (ENSMAUG00000013102) #29	Aqp5 (ENSMAUG00000012352) #30	Aqp2 (ENSMAUG00000012268) #31	Faim2 (ENSMAUG00000011863) #32	Bcdin3d (ENSMAUG00000011271) #33	Nckap5l (ENSMAUG00000012576) #34	Tmbim6 (ENSMAUG00000016188) #35	Fmnl3 (ENSMAUG00000015480) #37	Prpf40b (ENSMAUG00000012461)	Fam186b (ENSMAUG00000013956)
Chinese hamster chok1gshd	MODERN SPECIES	1	Bin2 (ENSCGRG00001011293)	Smagp (ENSCGRG00001008288) #9	Dazap2 (ENSCGRG00001011800) #10	Pou6f1 (ENSCGRG00001007665) #11	Tfcp2 (ENSCGRG00001011720) #12	Csrnp2 (ENSCGRG00001010089) #13	Letmd1 (ENSCGRG00001009795) #14	Slc11a2 (ENSCGRG00001010015) #15	Higd1c (ENSCGRG00001015030) #16	ENSCGRG00001007240 #17	Tmprss12 (ENSCGRG00001011685)	Atf1 (ENSCGRG00001010893) #18	Dip2b (ENSCGRG00001013289) #19	ENSCGRG00001010818 #20	ENSCGRG00001007279	Lima1 (ENSCGRG00001011635) #22	Cers5 (ENSCGRG00001010347) #23	Cox14 (ENSCGRG00001009193) #24	Gpd1 (ENSCGRG00001009756) #25	Smarcd1 (ENSCGRG00001007364) #26	ENSCGRG00001010607	Asic1 (ENSCGRG00001006030) #27	Racgap1 (ENSCGRG00001006150) #28	Aqp6 (ENSCGRG00001012509) #29	Aqp5 (ENSCGRG00001009707) #30	Aqp2 (ENSCGRG00001011575) #31	Faim2 (ENSCGRG00001006587) #32	ENSCGRG00001013010	Bcdin3d (ENSCGRG00001007320) #33	Nckap5l (ENSCGRG00001013558) #34	Tmbim6 (ENSCGRG00001006733) #35
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT01100000263763	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Northern American deer mouse	MODERN SPECIES	12	Bin2 (ENSPEMG00000012754)	Smagp (ENSPEMG00000016473) #9	Dazap2 (ENSPEMG00000025018) #10	Pou6f1 (ENSPEMG00000015011) #11	Tfcp2 (ENSPEMG00000014408) #12	Csrnp2 (ENSPEMG00000011851) #13	Letmd1 (ENSPEMG00000012384) #14	Slc11a2 (ENSPEMG00000014236) #15	Higd1c (ENSPEMG00000018206) #16	ENSPEMG00000013499 #17	Tmprss12 (ENSPEMG00000016972)	Atf1 (ENSPEMG00000030876) #18	Dip2b (ENSPEMG00000000780) #19	Larp4 (ENSPEMG00000018433) #20	ENSPEMG00000011861	Lima1 (ENSPEMG00000003334) #22	Cers5 (ENSPEMG00000012852) #23	Cox14 (ENSPEMG00000027539) #24	Gpd1 (ENSPEMG00000026722) #25	Smarcd1 (ENSPEMG00000017159) #26	Asic1 (ENSPEMG00000018402) #27	Racgap1 (ENSPEMG00000020606) #28	Aqp6 (ENSPEMG00000020561) #29	Aqp5 (ENSPEMG00000025856) #30	ENSPEMG00000003246 #31	Faim2 (ENSPEMG00000011638) #32	Bcdin3d (ENSPEMG00000011046) #33	Nckap5l (ENSPEMG00000015341) #34	Tmbim6 (ENSPEMG00000000013) #35	Fmnl3 (ENSPEMG00000022670) #37	Prpf40b (ENSPEMG00000016051)
Prairie vole	MODERN SPECIES	2	Bin2 (ENSMOCG00000013377)	Smagp (ENSMOCG00000016769) #9	Dazap2 (ENSMOCG00000018356) #10	Pou6f1 (ENSMOCG00000015772) #11	Tfcp2 (ENSMOCG00000019400) #12	Csrnp2 (ENSMOCG00000019553) #13	Letmd1 (ENSMOCG00000004211) #14	Slc11a2 (ENSMOCG00000018372) #15	ENSMOCG00000000643 #16	ENSMOCG00000015365 #17	Tmprss12 (ENSMOCG00000020665)	Atf1 (ENSMOCG00000004493) #18	Dip2b (ENSMOCG00000016325) #19	Larp4 (ENSMOCG00000020635) #20	ENSMOCG00000018505	Lima1 (ENSMOCG00000003899) #22	Cers5 (ENSMOCG00000019581) #23	ENSMOCG00000009853	Cox14 (ENSMOCG00000009917) #24	Gpd1 (ENSMOCG00000012228) #25	Smarcd1 (ENSMOCG00000010596) #26	Asic1 (ENSMOCG00000015709) #27	ENSMOCG00000001422 #28	Aqp6 (ENSMOCG00000005522) #29	Aqp5 (ENSMOCG00000015063) #30	Aqp2 (ENSMOCG00000020076) #31	Faim2 (ENSMOCG00000005201) #32	Bcdin3d (ENSMOCG00000019038) #33	Nckap5l (ENSMOCG00000006203) #34	Tmbim6 (ENSMOCG00000012246) #35	Fmnl3 (ENSMOCG00000007174) #37
Murinae	ANCESTRAL SPECIES	10	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00860000136312	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Mus	ANCESTRAL SPECIES	11	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00860000136312	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Mus_A	ANCESTRAL SPECIES	13	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00860000136312	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.q.b #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Mus_B	ANCESTRAL SPECIES	12	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00860000136312	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.q.b #17	ENSGT00940000154786.q.a #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.o #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Mouse	MODERN SPECIES	6	Pou6f1 (ENSMUSG00000009739) #11	Tfcp2 (ENSMUSG00000009733) #12	Csrnp2 (ENSMUSG00000044636) #13	Letmd1 (ENSMUSG00000037353) #14	Slc11a2 (ENSMUSG00000023030) #15	Higd1c (ENSMUSG00000093550) #16	Mettl7a2 (ENSMUSG00000056487) #17	Methig1 (ENSMUSG00000093789)	Mettl7a3 (ENSMUSG00000058057) #17	Mettl7a1 (ENSMUSG00000054619) #17	Tmprss12 (ENSMUSG00000045631)	Atf1 (ENSMUSG00000023027) #18	Dip2b (ENSMUSG00000023026) #19	Larp4 (ENSMUSG00000023025) #20	Fam186a (ENSMUSG00000045350) #21	Lima1 (ENSMUSG00000023022) #22	Cers5 (ENSMUSG00000023021) #23	Cox14 (ENSMUSG00000023020) #24	Gpd1 (ENSMUSG00000023019) #25	Smarcd1 (ENSMUSG00000023018) #26	Asic1 (ENSMUSG00000023017) #27	Racgap1 (ENSMUSG00000023015) #28	Aqp6 (ENSMUSG00000043144) #29	Aqp5 (ENSMUSG00000044217) #30	Aqp2 (ENSMUSG00000023013) #31	Faim2 (ENSMUSG00000023011) #32	Bcdin3d (ENSMUSG00000037525) #33	Nckap5l (ENSMUSG00000023009) #34	Tmbim6 (ENSMUSG00000023010) #35	Fmnl3 (ENSMUSG00000023008) #37	Prpf40b (ENSMUSG00000023007)
Mus_C	ANCESTRAL SPECIES	17	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00860000136312	ENSGT00940000155330 #15	ENSGT00940000154786.r #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.o #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00860000135898	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Steppe mouse	MODERN SPECIES	2239													ENSMSIG00000006714	ENSMSIG00000006718	ENSMSIG00000006734	Lima1 (ENSMSIG00000006756) #22	ENSMSIG00000006828	Cers5 (ENSMSIG00000006848) #23	Cox14 (ENSMSIG00000006927) #24	Gpd1 (ENSMSIG00000006935) #25	Smarcd1 (ENSMSIG00000006988) #26	Asic1 (ENSMSIG00000007108) #27
spretus	MODERN SPECIES	6	Smagp (MGP_SPRETEiJ_G0021189) #9	Dazap2 (MGP_SPRETEiJ_G0021188) #10	Pou6f1 (MGP_SPRETEiJ_G0021187) #11	Tfcp2 (MGP_SPRETEiJ_G0021186) #12	Csrnp2 (MGP_SPRETEiJ_G0021185) #13	Letmd1 (MGP_SPRETEiJ_G0021184) #14	MGP_SPRETEiJ_G0021183	Slc11a2 (MGP_SPRETEiJ_G0021182) #15	MGP_SPRETEiJ_G0021181 #17	MGP_SPRETEiJ_G0021180	Tmprss12 (MGP_SPRETEiJ_G0021179)	Atf1 (MGP_SPRETEiJ_G0021178) #18	Dip2b (MGP_SPRETEiJ_G0021177) #19	MGP_SPRETEiJ_G0021176 #20	MGP_SPRETEiJ_G0021175 #21	Lima1 (MGP_SPRETEiJ_G0021174) #22	Cers5 (MGP_SPRETEiJ_G0021173) #23	Cox14 (MGP_SPRETEiJ_G0021172) #24	Gpd1 (MGP_SPRETEiJ_G0021171) #25	Smarcd1 (MGP_SPRETEiJ_G0021170) #26	MGP_SPRETEiJ_G0021169	MGP_SPRETEiJ_G0021168 #27	Racgap1 (MGP_SPRETEiJ_G0021167) #28	Aqp6 (MGP_SPRETEiJ_G0021166) #29	Aqp5 (MGP_SPRETEiJ_G0021165) #30	Aqp2 (MGP_SPRETEiJ_G0021164) #31	Faim2 (MGP_SPRETEiJ_G0021163) #32	Bcdin3d (MGP_SPRETEiJ_G0021162) #33	Nckap5l (MGP_SPRETEiJ_G0021161) #34	Tmbim6 (MGP_SPRETEiJ_G0021160) #35	Fmnl3 (MGP_SPRETEiJ_G0021159) #37
Ryukyu mouse	MODERN SPECIES	6	Pou6f1 (MGP_CAROLIEiJ_G0020294) #11	Tfcp2 (MGP_CAROLIEiJ_G0020293) #12	Csrnp2 (MGP_CAROLIEiJ_G0020292) #13	Letmd1 (MGP_CAROLIEiJ_G0020291) #14	MGP_CAROLIEiJ_G0020290	Slc11a2 (MGP_CAROLIEiJ_G0020289) #15	MGP_CAROLIEiJ_G0020288 #17	MGP_CAROLIEiJ_G0020287 #17	MGP_CAROLIEiJ_G0020286 #17	MGP_CAROLIEiJ_G0020285 #17	MGP_CAROLIEiJ_G0020284	Atf1 (MGP_CAROLIEiJ_G0020283) #18	Dip2b (MGP_CAROLIEiJ_G0020282) #19	Larp4 (MGP_CAROLIEiJ_G0020281) #20	MGP_CAROLIEiJ_G0020280	Lima1 (MGP_CAROLIEiJ_G0020279) #22	Cers5 (MGP_CAROLIEiJ_G0020278) #23	Cox14 (MGP_CAROLIEiJ_G0020277) #24	Gpd1 (MGP_CAROLIEiJ_G0020276) #25	Smarcd1 (MGP_CAROLIEiJ_G0020275) #26	MGP_CAROLIEiJ_G0020274	MGP_CAROLIEiJ_G0020273 #27	Racgap1 (MGP_CAROLIEiJ_G0020272) #28	Aqp6 (MGP_CAROLIEiJ_G0020271) #29	Aqp5 (MGP_CAROLIEiJ_G0020270) #30	Aqp2 (MGP_CAROLIEiJ_G0020269) #31	Faim2 (MGP_CAROLIEiJ_G0020268) #32	Bcdin3d (MGP_CAROLIEiJ_G0020267) #33	Nckap5l (MGP_CAROLIEiJ_G0020266) #34	Tmbim6 (MGP_CAROLIEiJ_G0020265) #35	Fmnl3 (MGP_CAROLIEiJ_G0020264) #37
Shrew mouse	MODERN SPECIES	8	Smagp (MGP_PahariEiJ_G0020297) #9	Dazap2 (MGP_PahariEiJ_G0020296) #10	Pou6f1 (MGP_PahariEiJ_G0020295) #11	Tfcp2 (MGP_PahariEiJ_G0020294) #12	Csrnp2 (MGP_PahariEiJ_G0020293) #13	Letmd1 (MGP_PahariEiJ_G0020292) #14	Slc11a2 (MGP_PahariEiJ_G0020291) #15	MGP_PahariEiJ_G0020290 #17	MGP_PahariEiJ_G0020289 #17	MGP_PahariEiJ_G0020288 #17	Tmprss12 (MGP_PahariEiJ_G0020287)	Atf1 (MGP_PahariEiJ_G0020286) #18	Dip2b (MGP_PahariEiJ_G0020285) #19	Larp4 (MGP_PahariEiJ_G0020284) #20	MGP_PahariEiJ_G0020283 #21	Lima1 (MGP_PahariEiJ_G0020282) #22	Cers5 (MGP_PahariEiJ_G0020281) #23	Cox14 (MGP_PahariEiJ_G0020280) #24	Gpd1 (MGP_PahariEiJ_G0020279) #25	Smarcd1 (MGP_PahariEiJ_G0020278) #26	MGP_PahariEiJ_G0020277	MGP_PahariEiJ_G0020276 #27	Racgap1 (MGP_PahariEiJ_G0020275) #28	Aqp6 (MGP_PahariEiJ_G0020274) #29	Aqp5 (MGP_PahariEiJ_G0020273) #30	Aqp2 (MGP_PahariEiJ_G0020272) #31	Faim2 (MGP_PahariEiJ_G0020271) #32	Bcdin3d (MGP_PahariEiJ_G0020270) #33	Nckap5l (MGP_PahariEiJ_G0020269) #34	Tmbim6 (MGP_PahariEiJ_G0020268) #35	Fmnl3 (MGP_PahariEiJ_G0020267) #37
Rat	MODERN SPECIES	17	Pou6f1 (ENSRNOG00000004595) #11	Pou6f1 (ENSRNOG00000070769) #11	Tfcp2 (ENSRNOG00000032395) #12	Csrnp2 (ENSRNOG00000019653) #13	Letmd1 (ENSRNOG00000029855) #14	AABR07058899.1 (ENSRNOG00000053802)	Slc11a2 (ENSRNOG00000019550) #15	Higd1c (ENSRNOG00000046069) #16	Mettl7a (ENSRNOG00000001376) #17	Tmprss12 (ENSRNOG00000031099)	Atf1 (ENSRNOG00000061088) #18	Dip2b (ENSRNOG00000056106) #19	Larp4 (ENSRNOG00000068079) #20	ENSRNOG00000065389 #21	ENSRNOG00000065833	Lima1 (ENSRNOG00000059801) #22	Cers5 (ENSRNOG00000052990) #23	Gpd1 (ENSRNOG00000056457) #25	Smarcd1 (ENSRNOG00000061572) #26	Gm17349 (ENSRNOG00000070544)	Asic1 (ENSRNOG00000059765) #27	Racgap1 (ENSRNOG00000049033) #28	Aqp5 (ENSRNOG00000051970) #30	Aqp2 (ENSRNOG00000054378) #31	Aqp6 (ENSRNOG00000053181) #29	Aqp6 (ENSRNOG00000063448) #29	Faim2 (ENSRNOG00000045554) #32	Bcdin3d (ENSRNOG00000058430) #33	Nckap5l (ENSRNOG00000056678) #34	Tmbim6 (ENSRNOG00000055579) #35	Fmnl3 (ENSRNOG00000056297) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1453																Lima1 (ENSNGAG00000020939) #22	Cers5 (ENSNGAG00000008489) #23	Cox14 (ENSNGAG00000010870) #24	Gpd1 (ENSNGAG00000008342) #25	Smarcd1 (ENSNGAG00000002751) #26	Asic1 (ENSNGAG00000000530) #27	ENSNGAG00000014765	Racgap1 (ENSNGAG00000008592) #28	Aqp6 (ENSNGAG00000000487) #29	Aqp5 (ENSNGAG00000000343) #30	Aqp2 (ENSNGAG00000020740) #31	Faim2 (ENSNGAG00000015711) #32	Bcdin3d (ENSNGAG00000014829) #33	Nckap5l (ENSNGAG00000001434) #34	ENSNGAG00000000369 #35	Fmnl3 (ENSNGAG00000004258) #37
Lesser Egyptian jerboa	MODERN SPECIES	42	Scn8a (ENSJJAG00000018047)	Slc4a8 (ENSJJAG00000016335)	Galnt6 (ENSJJAG00000017457)	Cela1 (ENSJJAG00000000473) #7	ENSJJAG00000021830	ENSJJAG00000021573 #9	Dazap2 (ENSJJAG00000019705) #10	ENSJJAG00000012793 #11	Tfcp2 (ENSJJAG00000019094) #12	Csrnp2 (ENSJJAG00000017839) #13	Letmd1 (ENSJJAG00000022897) #14	Slc11a2 (ENSJJAG00000024107) #15	Dip2b (ENSJJAG00000010269) #19	ENSJJAG00000014649 #20	ENSJJAG00000001889	Lima1 (ENSJJAG00000012969) #22	Cers5 (ENSJJAG00000023418) #23	Gpd1 (ENSJJAG00000021922) #25	Smarcd1 (ENSJJAG00000015550) #26	Asic1 (ENSJJAG00000021289) #27	Racgap1 (ENSJJAG00000020476) #28	Aqp6 (ENSJJAG00000021101) #29	Aqp5 (ENSJJAG00000007758) #30	Aqp2 (ENSJJAG00000021696) #31	Faim2 (ENSJJAG00000012628) #32	Bcdin3d (ENSJJAG00000013981) #33	Nckap5l (ENSJJAG00000023097) #34	Tmbim6 (ENSJJAG00000023466) #35	Fmnl3 (ENSJJAG00000015497) #37	Prpf40b (ENSJJAG00000014805)	Fam186b (ENSJJAG00000021028)
Kangaroo rat	MODERN SPECIES	361	ENSDORG00000025542	Smagp (ENSDORG00000027416) #9	Dazap2 (ENSDORG00000028740) #10	ENSDORG00000014216 #11	Tfcp2 (ENSDORG00000014214) #12	Csrnp2 (ENSDORG00000026384) #13	Letmd1 (ENSDORG00000010376) #14	Slc11a2 (ENSDORG00000008507) #15	Higd1c (ENSDORG00000015929) #16	ENSDORG00000026920 #17	Tmprss12 (ENSDORG00000004652)	Atf1 (ENSDORG00000007920) #18	Dip2b (ENSDORG00000007913) #19	Larp4 (ENSDORG00000004013) #20	ENSDORG00000028650	Lima1 (ENSDORG00000000176) #22	ENSDORG00000023619 #23	Cox14 (ENSDORG00000009110) #24	Gpd1 (ENSDORG00000027518) #25	Smarcd1 (ENSDORG00000003677) #26	ENSDORG00000028990	Asic1 (ENSDORG00000003675) #27	ENSDORG00000023270 #28	Aqp6 (ENSDORG00000014446) #29	Aqp5 (ENSDORG00000014449) #30	Aqp2 (ENSDORG00000023803) #31	Faim2 (ENSDORG00000005952) #32	Bcdin3d (ENSDORG00000025460) #33	Nckap5l (ENSDORG00000004822) #34	ENSDORG00000001282	Fmnl3 (ENSDORG00000000273) #37
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.i.a #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Marmotini	ANCESTRAL SPECIES	19	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.x #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.i.a #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b.j #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Marmotini_b	ANCESTRAL SPECIES	11	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.x #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409.i.a #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629.u #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b.j #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Arctic ground squirrel	MODERN SPECIES	348									ENSUPAG00010010515 #17	TMPRSS12 (ENSUPAG00010010508)	ATF1 (ENSUPAG00010010499) #18	DIP2B (ENSUPAG00010010318) #19	ENSUPAG00010010315	LARP4 (ENSUPAG00010010256) #20	FAM186A (ENSUPAG00010010227) #21	LIMA1 (ENSUPAG00010010198) #22	CERS5 (ENSUPAG00010010155) #23	GPD1 (ENSUPAG00010010135) #25	ENSUPAG00010010097 #26	ASIC1 (ENSUPAG00010010041) #27	ENSUPAG00010010033	RACGAP1 (ENSUPAG00010009990) #28	AQP6 (ENSUPAG00010009981) #29	AQP5 (ENSUPAG00010009963) #30	AQP2 (ENSUPAG00010009953) #31	FAIM2 (ENSUPAG00010009920) #32	BCDIN3D (ENSUPAG00010009912) #33	NCKAP5L (ENSUPAG00010009897) #34	TMBIM6 (ENSUPAG00010009879) #35	FMNL3 (ENSUPAG00010009805) #37	PRPF40B (ENSUPAG00010009744)
Squirrel	MODERN SPECIES	112	ENSSTOG00000009185	SMAGP (ENSSTOG00000026431) #9	DAZAP2 (ENSSTOG00000027739) #10	POU6F1 (ENSSTOG00000009140) #11	TFCP2 (ENSSTOG00000009123) #12	CSRNP2 (ENSSTOG00000009118) #13	LETMD1 (ENSSTOG00000009107) #14	SLC11A2 (ENSSTOG00000013293) #15	HIGD1C (ENSSTOG00000022352) #16	METTL7A (ENSSTOG00000021095) #17	TMPRSS12 (ENSSTOG00000000180)	ATF1 (ENSSTOG00000010742) #18	DIP2B (ENSSTOG00000003833) #19	LARP4 (ENSSTOG00000003553) #20	ENSSTOG00000032900	LIMA1 (ENSSTOG00000004992) #22	CERS5 (ENSSTOG00000004980) #23	COX14 (ENSSTOG00000004975) #24	GPD1 (ENSSTOG00000004948) #25	SMARCD1 (ENSSTOG00000032441) #26	ASIC1 (ENSSTOG00000004908) #27	ENSSTOG00000011264 #28	AQP6 (ENSSTOG00000025554) #29	AQP5 (ENSSTOG00000011261) #30	AQP2 (ENSSTOG00000011259) #31	FAIM2 (ENSSTOG00000027904) #32	BCDIN3D (ENSSTOG00000021275) #33	NCKAP5L (ENSSTOG00000022659) #34	TMBIM6 (ENSSTOG00000001165) #35	FMNL3 (ENSSTOG00000001149) #37	PRPF40B (ENSSTOG00000001132)
Alpin marmot	MODERN SPECIES	34	ENSMMMG00000023332 #12	CSRNP2 (ENSMMMG00000023325) #13	LETMD1 (ENSMMMG00000023321) #14	ENSMMMG00000023319	SLC11A2 (ENSMMMG00000023309) #15	HIGD1C (ENSMMMG00000023308) #16	ENSMMMG00000023306 #17	ENSMMMG00000023303 #17	ENSMMMG00000023301	ENSMMMG00000023296 #17	TMPRSS12 (ENSMMMG00000023294)	ATF1 (ENSMMMG00000023289) #18	DIP2B (ENSMMMG00000023271) #19	ENSMMMG00000023269	ENSMMMG00000023263 #20	LIMA1 (ENSMMMG00000023257) #22	CERS5 (ENSMMMG00000023250) #23	COX14 (ENSMMMG00000023249) #24	GPD1 (ENSMMMG00000023246) #25	SMARCD1 (ENSMMMG00000023232) #26	ASIC1 (ENSMMMG00000023219) #27	ENSMMMG00000023206 #28	AQP6 (ENSMMMG00000023204) #29	AQP5 (ENSMMMG00000023197) #30	AQP2 (ENSMMMG00000023195) #31	FAIM2 (ENSMMMG00000023188) #32	BCDIN3D (ENSMMMG00000023186) #33	NCKAP5L (ENSMMMG00000023183) #34	TMBIM6 (ENSMMMG00000023160) #35	FMNL3 (ENSMMMG00000023122) #37	PRPF40B (ENSMMMG00000023101)
Eurasian red squirrel	MODERN SPECIES	14	POU6F1 (ENSSVLG00005014412) #11	TFCP2 (ENSSVLG00005013960) #12	CSRNP2 (ENSSVLG00005013396) #13	LETMD1 (ENSSVLG00005013359) #14	SLC11A2 (ENSSVLG00005012984) #15	HIGD1C (ENSSVLG00005012890) #16	ENSSVLG00005012847 #17	ENSSVLG00005012785 #17	TMPRSS12 (ENSSVLG00005012718)	ATF1 (ENSSVLG00005012633) #18	DIP2B (ENSSVLG00005012220) #19	ENSSVLG00005012155	ENSSVLG00005010983 #20	ENSSVLG00005017764	ENSSVLG00005017589 #21	LIMA1 (ENSSVLG00005017526) #22	CERS5 (ENSSVLG00005017441) #23	COX14 (ENSSVLG00005017409) #24	GPD1 (ENSSVLG00005017224) #25	SMARCD1 (ENSSVLG00005017007) #26	ASIC1 (ENSSVLG00005016755) #27	RACGAP1 (ENSSVLG00005016710) #28	AQP6 (ENSSVLG00005016621) #29	AQP5 (ENSSVLG00005016577) #30	AQP2 (ENSSVLG00005016529) #31	FAIM2 (ENSSVLG00005016322) #32	ENSSVLG00005016310	BCDIN3D (ENSSVLG00005016270) #33	NCKAP5L (ENSSVLG00005016159) #34	ENSSVLG00005016133	TMBIM6 (ENSSVLG00005016085) #35
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000162804 #16	ENSGT00940000155330 #15	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00860000135898	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	8	POU6F1 (ENSHGLG00000006104) #11	TFCP2 (ENSHGLG00000006837) #12	CSRNP2 (ENSHGLG00000038318) #13	LETMD1 (ENSHGLG00000035309) #14	HIGD1C (ENSHGLG00000010374) #16	SLC11A2 (ENSHGLG00000015898) #15	ENSHGLG00000015984	METTL7A (ENSHGLG00000007624) #17	ENSHGLG00000033537	ENSHGLG00000003982	ATF1 (ENSHGLG00000044800) #18	ENSHGLG00000035234	DIP2B (ENSHGLG00000006842) #19	ENSHGLG00000005513 #20	ENSHGLG00000041442 #21	ENSHGLG00000048426 #22	CERS5 (ENSHGLG00000003946) #23	ENSHGLG00000005048 #24	GPD1 (ENSHGLG00000006106) #25	ENSHGLG00000003935	SMARCD1 (ENSHGLG00000003601) #26	Asic1 (ENSHGLG00000004300) #27	RACGAP1 (ENSHGLG00000005812) #28	AQP6 (ENSHGLG00000003440) #29	ENSHGLG00000044398	AQP5 (ENSHGLG00000004009) #30	ENSHGLG00000048362	AQP2 (ENSHGLG00000004210) #31	FAIM2 (ENSHGLG00000033168) #32	BCDIN3D (ENSHGLG00000048029) #33	NCKAP5L (ENSHGLG00000007784) #34
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000040885	ENSHGLG00000041181	ENSHGLG00000049940	SMIM31 (ENSHGLG00000004408)	ENSHGLG00000010125	ENSHGLG00000020521	TRIM60 (ENSHGLG00000044107)	ENSHGLG00000042682	TMEM192 (ENSHGLG00000042804)	KLHL2 (ENSHGLG00000006484)	ENSHGLG00000005109	CPE (ENSHGLG00000044272)	ENSHGLG00000050964	ENSHGLG00000038708	ENSHGLG00000041799	ENSHGLG00000043287 #22	ENSHGLG00000006655	ENSHGLG00000049226	ENSHGLG00000034446	ENSHGLG00000047271	ENSHGLG00000039306	ENSHGLG00000035113	ANXA10 (ENSHGLG00000001262)	ENSHGLG00000050525	ENSHGLG00000013790	ENSHGLG00000034493	PALLD (ENSHGLG00000015506)	ENSHGLG00000032370	SH3RF1 (ENSHGLG00000016975)	NEK1 (ENSHGLG00000012517)	CLCN3 (ENSHGLG00000007901)
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000162804 #16	ENSGT00940000155330 #15	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT01100000263763	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00860000135898	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Hystricomorpha_b	ANCESTRAL SPECIES	53	ENSGT01030000234528.B.b.a.a.a #7	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT01100000263763	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00860000135898	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Long-tailed chinchilla	MODERN SPECIES	254	CELA1 (ENSCLAG00000001229) #7	ENSCLAG00000000915	SMAGP (ENSCLAG00000000875) #9	DAZAP2 (ENSCLAG00000000857) #10	POU6F1 (ENSCLAG00000000753) #11	TFCP2 (ENSCLAG00000000852) #12	CSRNP2 (ENSCLAG00000000767) #13	LETMD1 (ENSCLAG00000000694) #14	ENSCLAG00000001253 #15	METTL7A (ENSCLAG00000001191) #17	TMPRSS12 (ENSCLAG00000000986)	ATF1 (ENSCLAG00000000957) #18	DIP2B (ENSCLAG00000002317) #19	LARP4 (ENSCLAG00000001829) #20	ENSCLAG00000001798	LIMA1 (ENSCLAG00000000738) #22	CERS5 (ENSCLAG00000001516) #23	GPD1 (ENSCLAG00000001367) #25	ENSCLAG00000001015	SMARCD1 (ENSCLAG00000000946) #26	ASIC1 (ENSCLAG00000000832) #27	RACGAP1 (ENSCLAG00000001084) #28	AQP6 (ENSCLAG00000001011) #29	AQP5 (ENSCLAG00000000883) #30	AQP2 (ENSCLAG00000000834) #31	ENSCLAG00000017426	FAIM2 (ENSCLAG00000000961) #32	BCDIN3D (ENSCLAG00000000912) #33	NCKAP5L (ENSCLAG00000000530) #34	TMBIM6 (ENSCLAG00000001272) #35	ENSCLAG00000001174
Degu	MODERN SPECIES	134	ENSODEG00000011859	ENSODEG00000012543	ENSODEG00000012166	SLC11A2 (ENSODEG00000011252) #15	ENSODEG00000019844	ENSODEG00000011220	METTL7A (ENSODEG00000012146) #17	ENSODEG00000015022	ENSODEG00000011824 #18	ENSODEG00000019859	ENSODEG00000010935	DIP2B (ENSODEG00000011416) #19	LARP4 (ENSODEG00000009770) #20	ENSODEG00000010866	ENSODEG00000019860	LIMA1 (ENSODEG00000010787) #22	ENSODEG00000019715	ENSODEG00000019772	CERS5 (ENSODEG00000010040) #23	GPD1 (ENSODEG00000011334) #25	ENSODEG00000010634	SMARCD1 (ENSODEG00000010234) #26	ASIC1 (ENSODEG00000009913) #27	RACGAP1 (ENSODEG00000010159) #28	AQP6 (ENSODEG00000009870) #29	AQP5 (ENSODEG00000011095) #30	AQP2 (ENSODEG00000010450) #31	ENSODEG00000012970	FAIM2 (ENSODEG00000009571) #32	ENSODEG00000011097	ENSODEG00000010974
Guinea pig	MODERN SPECIES	9	SMAGP (ENSCPOG00000033211) #9	DAZAP2 (ENSCPOG00000037749) #10	ENSCPOG00000019712 #11	TFCP2 (ENSCPOG00000007923) #12	CSRNP2 (ENSCPOG00000035299) #13	LETMD1 (ENSCPOG00000007913) #14	HIGD1C (ENSCPOG00000020309) #16	SLC11A2 (ENSCPOG00000039292) #15	METTL7A (ENSCPOG00000031803) #17	TMPRSS12 (ENSCPOG00000023853)	ATF1 (ENSCPOG00000033391) #18	DIP2B (ENSCPOG00000012185) #19	LARP4 (ENSCPOG00000020519) #20	ENSCPOG00000039626	ENSCPOG00000024814	LIMA1 (ENSCPOG00000000521) #22	CERS5 (ENSCPOG00000000418) #23	GPD1 (ENSCPOG00000000417) #25	SMARCD1 (ENSCPOG00000038875) #26	ASIC1 (ENSCPOG00000000413) #27	RACGAP1 (ENSCPOG00000004383) #28	AQP6 (ENSCPOG00000004378) #29	AQP5 (ENSCPOG00000027598) #30	AQP2 (ENSCPOG00000022039) #31	FAIM2 (ENSCPOG00000037651) #32	BCDIN3D (ENSCPOG00000039774) #33	NCKAP5L (ENSCPOG00000013063) #34	TMBIM6 (ENSCPOG00000002195) #35	FMNL3 (ENSCPOG00000001888) #37	PRPF40B (ENSCPOG00000001883)	FAM186B (ENSCPOG00000033003)
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158313 #22
Common shrew	MODERN SPECIES	2568																LIMA1 (ENSSARG00000007927) #22
Hedgehog	MODERN SPECIES	6609																LIMA1 (ENSEEUG00000004967) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Carnivora	ANCESTRAL SPECIES	3	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Caniformia	ANCESTRAL SPECIES	19	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Ursidae	ANCESTRAL SPECIES	36	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685.d #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b.f #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b.h #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.ab #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Ursus	ANCESTRAL SPECIES	39	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685.d #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b.f #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b.h #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.ab #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
American black bear	MODERN SPECIES	2902																LIMA1 (ENSUAMG00000021327) #22	CERS5 (ENSUAMG00000021330) #23	ENSUAMG00000021332 #24
Polar bear	MODERN SPECIES	262	BIN2 (ENSUMAG00000008591)	SMAGP (ENSUMAG00000008588) #9	DAZAP2 (ENSUMAG00000008583) #10	ENSUMAG00000008578 #11	TFCP2 (ENSUMAG00000008566) #12	CSRNP2 (ENSUMAG00000008561) #13	LETMD1 (ENSUMAG00000008550) #14	SLC11A2 (ENSUMAG00000008526) #15	HIGD1C (ENSUMAG00000008515) #16	METTL7A (ENSUMAG00000008512) #17	TMPRSS12 (ENSUMAG00000008499)	ATF1 (ENSUMAG00000008491) #18	DIP2B (ENSUMAG00000008478) #19	LARP4 (ENSUMAG00000008473) #20	ENSUMAG00000008467 #21	LIMA1 (ENSUMAG00000008459) #22	CERS5 (ENSUMAG00000008442) #23	COX14 (ENSUMAG00000008436) #24	GPD1 (ENSUMAG00000008431) #25	SMARCD1 (ENSUMAG00000007909) #26	RACGAP1 (ENSUMAG00000007836) #28	ENSUMAG00000007825 #29	AQP5 (ENSUMAG00000007811) #30	FAIM2 (ENSUMAG00000007805) #32	BCDIN3D (ENSUMAG00000007798) #33	NCKAP5L (ENSUMAG00000007780) #34	TMBIM6 (ENSUMAG00000007734) #35	FMNL3 (ENSUMAG00000006945) #37	PRPF40B (ENSUMAG00000006690)	FAM186B (ENSUMAG00000006667)	MCRS1 (ENSUMAG00000006663)
Giant Panda	MODERN SPECIES	7	SMAGP (ENSAMEG00000023842) #9	ENSAMEG00000002070 #10	POU6F1 (ENSAMEG00000002092) #11	TFCP2 (ENSAMEG00000002108) #12	CSRNP2 (ENSAMEG00000002168) #13	LETMD1 (ENSAMEG00000002175) #14	SLC11A2 (ENSAMEG00000002188) #15	HIGD1C (ENSAMEG00000024559) #16	ENSAMEG00000029510 #17	ENSAMEG00000029335	ATF1 (ENSAMEG00000002278) #18	DIP2B (ENSAMEG00000002293) #19	LARP4 (ENSAMEG00000001275) #20	ENSAMEG00000001271 #21	ENSAMEG00000030556	LIMA1 (ENSAMEG00000001243) #22	CERS5 (ENSAMEG00000001228) #23	COX14 (ENSAMEG00000018818) #24	GPD1 (ENSAMEG00000001211) #25	SMARCD1 (ENSAMEG00000001180) #26	ASIC1 (ENSAMEG00000001129) #27	RACGAP1 (ENSAMEG00000001093) #28	AQP6 (ENSAMEG00000001087) #29	AQP5 (ENSAMEG00000024235) #30	AQP2 (ENSAMEG00000001065) #31	FAIM2 (ENSAMEG00000028783) #32	BCDIN3D (ENSAMEG00000001025) #33	NCKAP5L (ENSAMEG00000025987) #34	TMBIM6 (ENSAMEG00000001004) #35	FMNL3 (ENSAMEG00000000987) #37	PRPF40B (ENSAMEG00000000956)
Mustelinae	ANCESTRAL SPECIES	33	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Ferret	MODERN SPECIES	450																LIMA1 (ENSMPUG00000014253) #22	CERS5 (ENSMPUG00000014284) #23	GPD1 (ENSMPUG00000014346) #25	SMARCD1 (ENSMPUG00000014386) #26	ASIC1 (ENSMPUG00000014390) #27	RACGAP1 (ENSMPUG00000014468) #28	AQP6 (ENSMPUG00000014513) #29	AQP5 (ENSMPUG00000014522) #30	AQP2 (ENSMPUG00000014526) #31	FAIM2 (ENSMPUG00000014553) #32	BCDIN3D (ENSMPUG00000014557) #33	NCKAP5L (ENSMPUG00000014558) #34	TMBIM6 (ENSMPUG00000014563) #35	FMNL3 (ENSMPUG00000014569) #37	PRPF40B (ENSMPUG00000014578)	FAM186B (ENSMPUG00000014580)
American mink	MODERN SPECIES	196	POU6F1 (ENSNVIG00000005046) #11	TFCP2 (ENSNVIG00000005073) #12	CSRN2 (ENSNVIG00000005140) #13	LETMD1 (ENSNVIG00000005163) #14	SLC11A2 (ENSNVIG00000005227) #15	HIGD1C (ENSNVIG00000005269) #16	ENSNVIG00000005276 #17	TMPRSS12 (ENSNVIG00000005288)	ATF1 (ENSNVIG00000005297) #18	ENSNVIG00000005323	DIP2B (ENSNVIG00000005336) #19	ENSNVIG00000005378	ENSNVIG00000005385	LARP4 (ENSNVIG00000005403) #20	FAM186A (ENSNVIG00000005649) #21	LIMA1 (ENSNVIG00000005697) #22	CERS5 (ENSNVIG00000005793) #23	COX14 (ENSNVIG00000005810) #24	GPD1 (ENSNVIG00000005816) #25	SMARCD1 (ENSNVIG00000005856) #26	ASIC1 (ENSNVIG00000005917) #27	RGAP1 (ENSNVIG00000005967) #28	ENSNVIG00000006001 #29	ENSNVIG00000006008 #29	AQP5 (ENSNVIG00000006016) #30	AQP2 (ENSNVIG00000006033) #31	FAIM2 (ENSNVIG00000006046) #32	BCDIN3D (ENSNVIG00000006112) #33	NCKAP5L (ENSNVIG00000006126) #34	TMBIM6 (ENSNVIG00000006177) #35	FMNL3 (ENSNVIG00000006209) #37
Canidae	ANCESTRAL SPECIES	8	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b	ENSGT00940000162031
Dingo	MODERN SPECIES	329					TFCP2 (ENSCAFG00020014807) #12	CSRNP2 (ENSCAFG00020014797) #13	LETMD1 (ENSCAFG00020014792) #14	SLC11A2 (ENSCAFG00020014788) #15	HIGD1C (ENSCAFG00020014787) #16	METTL7A (ENSCAFG00020014786) #17	TMPRSS12 (ENSCAFG00020014785)	ATF1 (ENSCAFG00020014783) #18	DIP2B (ENSCAFG00020014761) #19	LARP4 (ENSCAFG00020014554) #20	ENSCAFG00020014540	LIMA1 (ENSCAFG00020014537) #22	CERS5 (ENSCAFG00020014536) #23	GPD1 (ENSCAFG00020014534) #25	SMARCD1 (ENSCAFG00020014530) #26	ASIC1 (ENSCAFG00020014523) #27	RACGAP1 (ENSCAFG00020014493) #28	AQP6 (ENSCAFG00020014490) #29	AQP5 (ENSCAFG00020014488) #30	AQP2 (ENSCAFG00020014482) #31	FAIM2 (ENSCAFG00020014479) #32	BCDIN3D (ENSCAFG00020014478) #33	NCKAP5L (ENSCAFG00020014476) #34	ENSCAFG00020014464 #35	FMNL3 (ENSCAFG00020013736) #37	PRPF40B (ENSCAFG00020013555)	FAM186B (ENSCAFG00020013533)
Dog	MODERN SPECIES	19	BIN2 (ENSCAFG00845015029)	ENSCAFG00845015122 #9	DAZAP2 (ENSCAFG00845015241) #10	POU6F1 (ENSCAFG00845015362) #11	TFCP2 (ENSCAFG00845015460) #12	CSRNP2 (ENSCAFG00845015572) #13	LETMD1 (ENSCAFG00845015645) #14	SLC11A2 (ENSCAFG00845015776) #15	HIGD1C (ENSCAFG00845015926) #16	METTL7A (ENSCAFG00845015966) #17	TMPRSS12 (ENSCAFG00845016120)	ATF1 (ENSCAFG00845016253) #18	DIP2B (ENSCAFG00845016416) #19	LARP4 (ENSCAFG00845016911) #20	ENSCAFG00845017048	LIMA1 (ENSCAFG00845017111) #22	CERS5 (ENSCAFG00845017240) #23	GPD1 (ENSCAFG00845017395) #25	SMARCD1 (ENSCAFG00845017536) #26	ASIC1 (ENSCAFG00845017786) #27	RACGAP1 (ENSCAFG00845017966) #28	AQP2 (ENSCAFG00845018235) #30	ENSCAFG00845018358 #29	AQP2 (ENSCAFG00845018399) #31	FAIM2 (ENSCAFG00845018479) #32	BCDIN3D (ENSCAFG00845018667) #33	NCKAP5L (ENSCAFG00845018746) #34	TMBIM6 (ENSCAFG00845018887) #35	FMNL3 (ENSCAFG00845019002) #37	PRPF40B (ENSCAFG00845019354)	FAM186B (ENSCAFG00845019610)
Red fox	MODERN SPECIES	32	SMAGP (ENSVVUG00000027700) #9	DAZAP2 (ENSVVUG00000027699) #10	ENSVVUG00000027698 #11	ENSVVUG00000027696 #11	TFCP2 (ENSVVUG00000027694) #12	CSRNP2 (ENSVVUG00000027692) #13	LETMD1 (ENSVVUG00000027690) #14	SLC11A2 (ENSVVUG00000026028) #15	HIGD1C (ENSVVUG00000025929) #16	METTL7A (ENSVVUG00000025922) #17	TMPRSS12 (ENSVVUG00000025918)	ATF1 (ENSVVUG00000025915) #18	DIP2B (ENSVVUG00000025511) #19	LARP4 (ENSVVUG00000024717) #20	FAM186A (ENSVVUG00000024679) #21	LIMA1 (ENSVVUG00000024665) #22	CERS5 (ENSVVUG00000024561) #23	COX14 (ENSVVUG00000024554) #24	GPD1 (ENSVVUG00000024551) #25	SMARCD1 (ENSVVUG00000023774) #26	ASIC1 (ENSVVUG00000023704) #27	RACGAP1 (ENSVVUG00000023514) #28	AQP6 (ENSVVUG00000023503) #29	AQP5 (ENSVVUG00000023496) #30	AQP2 (ENSVVUG00000023493) #31	FAIM2 (ENSVVUG00000023489) #32	BCDIN3D (ENSVVUG00000023486) #33	NCKAP5L (ENSVVUG00000023483) #34	TMBIM6 (ENSVVUG00000023288) #35	FMNL3 (ENSVVUG00000021863) #37	PRPF40B (ENSVVUG00000021078)
Felidae	ANCESTRAL SPECIES	2	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Panthera	ANCESTRAL SPECIES		ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Tiger	MODERN SPECIES	14	SMAGP (ENSPTIG00000020940) #9	DAZAP2 (ENSPTIG00000019325) #10	POU6F1 (ENSPTIG00000018169) #11	TFCP2 (ENSPTIG00000015396) #12	CSRNP2 (ENSPTIG00000015106) #13	LETMD1 (ENSPTIG00000013794) #14	SLC11A2 (ENSPTIG00000009112) #15	HIGD1C (ENSPTIG00000008216) #16	METTL7A (ENSPTIG00000007802) #17	TMPRSS12 (ENSPTIG00000007159)	ATF1 (ENSPTIG00000006770) #18	ENSPTIG00000004844	DIP2B (ENSPTIG00000021861) #19	LARP4 (ENSPTIG00000015617) #20	ENSPTIG00000012364	LIMA1 (ENSPTIG00000010537) #22	CERS5 (ENSPTIG00000009121) #23	COX14 (ENSPTIG00000004070) #24	GPD1 (ENSPTIG00000006962) #25	SMARCD1 (ENSPTIG00000020602) #26	ASIC1 (ENSPTIG00000018928) #27	RACGAP1 (ENSPTIG00000017779) #28	AQP6 (ENSPTIG00000016718) #29	AQP5 (ENSPTIG00000015805) #30	AQP2 (ENSPTIG00000014960) #31	FAIM2 (ENSPTIG00000013680) #32	BCDIN3D (ENSPTIG00000013513) #33	NCKAP5L (ENSPTIG00000011996) #34	TMBIM6 (ENSPTIG00000009490) #35	FMNL3 (ENSPTIG00000020836) #37	PRPF40B (ENSPTIG00000014307)
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00950000183123.g.b.b	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
lion	MODERN SPECIES	7	DAZAP2 (ENSPLOG00000001193) #10	POU6F1 (ENSPLOG00000001146) #11	TFCP2 (ENSPLOG00000001041) #12	CSRNP2 (ENSPLOG00000000947) #13	LETMD1 (ENSPLOG00000000904) #14	SLC11A2 (ENSPLOG00000000737) #15	HIGD1C (ENSPLOG00000000654) #16	ENSPLOG00000000627	ENSPLOG00000000616 #17	TMPRSS12 (ENSPLOG00000000593)	ATF1 (ENSPLOG00000016034) #18	ENSPLOG00000016005	DIP2B (ENSPLOG00000015877) #19	LARP4 (ENSPLOG00000015506) #20	ENSPLOG00000015378	LIMA1 (ENSPLOG00000014948) #22	CERS5 (ENSPLOG00000014870) #23	COX14 (ENSPLOG00000014840) #24	GPD1 (ENSPLOG00000014692) #25	SMARCD1 (ENSPLOG00000014513) #26	ASIC1 (ENSPLOG00000014271) #27	RACGAP1 (ENSPLOG00000014124) #28	AQP6 (ENSPLOG00000014002) #29	AQP5 (ENSPLOG00000013935) #30	AQP2 (ENSPLOG00000013874) #31	FAIM2 (ENSPLOG00000013662) #32	BCDIN3D (ENSPLOG00000013629) #33	NCKAP5L (ENSPLOG00000013579) #34	TMBIM6 (ENSPLOG00000013481) #35	FMNL3 (ENSPLOG00000013298) #37	PRPF40B (ENSPLOG00000012564)
leopard	MODERN SPECIES	77	DAZAP2 (ENSPPRG00000001865) #10	POU6F1 (ENSPPRG00000003357) #11	TFCP2 (ENSPPRG00000005938) #12	CSRNP2 (ENSPPRG00000006285) #13	LETMD1 (ENSPPRG00000007835) #14	SLC11A2 (ENSPPRG00000012070) #15	HIGD1C (ENSPPRG00000012636) #16	ENSPPRG00000012824	ENSPPRG00000013022 #17	TMPRSS12 (ENSPPRG00000013377)	ATF1 (ENSPPRG00000014095) #18	ENSPPRG00000015331	DIP2B (ENSPPRG00000020933) #19	LARP4 (ENSPPRG00000004522) #20	FAM186A (ENSPPRG00000007323) #21	LIMA1 (ENSPPRG00000009365) #22	CERS5 (ENSPPRG00000010100) #23	COX14 (ENSPPRG00000019209) #24	GPD1 (ENSPPRG00000011319) #25	SMARCD1 (ENSPPRG00000012669) #26	ASIC1 (ENSPPRG00000015855) #27	RACGAP1 (ENSPPRG00000017428) #28	AQP6 (ENSPPRG00000021250) #29	AQP5 (ENSPPRG00000021657) #30	AQP2 (ENSPPRG00000023562) #31	FAIM2 (ENSPPRG00000000833) #32	BCDIN3D (ENSPPRG00000001284) #33	NCKAP5L (ENSPPRG00000001427) #34	TMBIM6 (ENSPPRG00000002717) #35	FMNL3 (ENSPPRG00000008008) #37	PRPF40B (ENSPPRG00000009015)
Cat	MODERN SPECIES	238	DAZAP2 (ENSFCAG00000037900) #10	POU6F1 (ENSFCAG00000004408) #11	TFCP2 (ENSFCAG00000030292) #12	CSRNP2 (ENSFCAG00000004406) #13	LETMD1 (ENSFCAG00000007253) #14	SLC11A2 (ENSFCAG00000004405) #15	HIGD1C (ENSFCAG00000048526) #16	METTL7A (ENSFCAG00000013893) #17	TMPRSS12 (ENSFCAG00000018533)	ATF1 (ENSFCAG00000013892) #18	ENSFCAG00000031604	ENSFCAG00000035517	DIP2B (ENSFCAG00000023484) #19	LARP4 (ENSFCAG00000031897) #20	FAM186A (ENSFCAG00000030176)	LIMA1 (ENSFCAG00000009465) #22	CERS5 (ENSFCAG00000009464) #23	ENSFCAG00000040163 #24	GPD1 (ENSFCAG00000009462) #25	SMARCD1 (ENSFCAG00000009461) #26	ASIC1 (ENSFCAG00000009460) #27	RACGAP1 (ENSFCAG00000009459) #28	AQP6 (ENSFCAG00000009458) #29	AQP5 (ENSFCAG00000009457) #30	AQP2 (ENSFCAG00000033645) #31	FAIM2 (ENSFCAG00000009456) #32	BCDIN3D (ENSFCAG00000009453) #33	NCKAP5L (ENSFCAG00000009455) #34	TMBIM6 (ENSFCAG00000009454) #35	FMNL3 (ENSFCAG00000009452) #37	PRPF40B (ENSFCAG00000009451)
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Equus	ANCESTRAL SPECIES	16	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000168617	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Horse	MODERN SPECIES	27	DAZAP2 (ENSECAG00000007313) #10	POU6F1 (ENSECAG00000024200) #11	TFCP2 (ENSECAG00000020650) #12	CSRNP2 (ENSECAG00000020403) #13	LETMD1 (ENSECAG00000014209) #14	SLC11A2 (ENSECAG00000020056) #15	HIGD1C (ENSECAG00000013371) #16	ENSECAG00000027812	TMPRSS12 (ENSECAG00000009548)	METTL7A (ENSECAG00000020202) #17	ENSECAG00000048892	ATF1 (ENSECAG00000016445) #18	DIP2B (ENSECAG00000017791) #19	LARP4 (ENSECAG00000012479) #20	FAM186A (ENSECAG00000028479) #21	LIMA1 (ENSECAG00000011991) #22	CERS5 (ENSECAG00000007356) #23	ENSECAG00000039282 #24	GPD1 (ENSECAG00000001568) #25	SMARCD1 (ENSECAG00000021885) #26	ASIC1 (ENSECAG00000016366) #27	RACGAP1 (ENSECAG00000010821) #28	AQP6 (ENSECAG00000043211) #29	AQP5 (ENSECAG00000008500) #30	AQP2 (ENSECAG00000023681) #31	FAIM2 (ENSECAG00000021544) #32	BCDIN3D (ENSECAG00000020861) #33	NCKAP5L (ENSECAG00000019044) #34	TMBIM6 (ENSECAG00000013149) #35	FMNL3 (ENSECAG00000005957) #37	FAM186B (ENSECAG00000020606)
Donkey	MODERN SPECIES	14	ENSEASG00005030464 #9	DAZAP2 (ENSEASG00005023725) #10	POU6F1 (ENSEASG00005005986) #11	TFCP2 (ENSEASG00005005976) #12	CSRNP2 (ENSEASG00005005970) #13	LETMD1 (ENSEASG00005005963) #14	SLC11A2 (ENSEASG00005005951) #15	HIGD1C (ENSEASG00005024715) #16	ENSEASG00005005942 #17	ENSEASG00005005941	TMPRSS12 (ENSEASG00005005935)	ATF1 (ENSEASG00005005929) #18	DIP2B (ENSEASG00005005081) #19	LARP4 (ENSEASG00005004356) #20	FAM186A (ENSEASG00005028951) #21	LIMA1 (ENSEASG00005004304) #22	CERS5 (ENSEASG00005004290) #23	ENSEASG00005030344 #24	GPD1 (ENSEASG00005004275) #25	SMARCD1 (ENSEASG00005004268) #26	ASIC1 (ENSEASG00005004253) #27	RACGAP1 (ENSEASG00005004246) #28	ENSEASG00005004243 #29	AQP5 (ENSEASG00005004240) #30	AQP2 (ENSEASG00005004228) #31	ENSEASG00005032977	FAIM2 (ENSEASG00005004220) #32	BCDIN3D (ENSEASG00005028175) #33	NCKAP5L (ENSEASG00005004097) #34	TMBIM6 (ENSEASG00005003998) #35	FMNL3 (ENSEASG00005001551) #37
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Microbat	MODERN SPECIES	1028								SLC11A2 (ENSMLUG00000013893) #15	ENSMLUG00000008324 #17	ENSMLUG00000024351	ENSMLUG00000023181 #18	DIP2B (ENSMLUG00000005360) #19	ENSMLUG00000012513 #20	ENSMLUG00000015268 #21	ENSMLUG00000012446	LIMA1 (ENSMLUG00000005140) #22	CERS5 (ENSMLUG00000005134) #23	ENSMLUG00000005129 #24	GPD1 (ENSMLUG00000005119) #25	SMARCD1 (ENSMLUG00000005110) #26	ASIC1 (ENSMLUG00000005096) #27	RACGAP1 (ENSMLUG00000015945) #28	AQP6 (ENSMLUG00000023963) #29	AQP2 (ENSMLUG00000015943) #31	FAIM2 (ENSMLUG00000009870) #32	BCDIN3D (ENSMLUG00000009857) #33	NCKAP5L (ENSMLUG00000009825) #34	TMBIM6 (ENSMLUG00000006379) #35	FMNL3 (ENSMLUG00000030360) #37	PRPF40B (ENSMLUG00000006364)	ENSMLUG00000029933
Greater horseshoe bat	MODERN SPECIES	1	POU6F1 (ENSRFEG00010016067) #11	ENSRFEG00010016033	TFCP2 (ENSRFEG00010015869) #12	CSRNP2 (ENSRFEG00010015798) #13	LETMD1 (ENSRFEG00010015608) #14	SLC11A2 (ENSRFEG00010015532) #15	HIGD1C (ENSRFEG00010015467) #16	ENSRFEG00010015409	ENSRFEG00010015370 #17	TMPRSS12 (ENSRFEG00010015273)	ATF1 (ENSRFEG00010015182) #18	DIP2B (ENSRFEG00010015063) #19	LARP4 (ENSRFEG00010014609) #20	ENSRFEG00010014588	ENSRFEG00010014508 #21	LIMA1 (ENSRFEG00010014283) #22	CERS5 (ENSRFEG00010014190) #23	COX14 (ENSRFEG00010014161) #24	GPD1 (ENSRFEG00010014097) #25	SMARCD1 (ENSRFEG00010013850) #26	ASIC1 (ENSRFEG00010013621) #27	RACGAP1 (ENSRFEG00010013522) #28	AQP6 (ENSRFEG00010013397) #29	AQP5 (ENSRFEG00010013365) #30	AQP2 (ENSRFEG00010013297) #31	ENSRFEG00010013273	FAIM2 (ENSRFEG00010013224) #32	BCDIN3D (ENSRFEG00010013189) #33	NCKAP5L (ENSRFEG00010013134) #34	TMBIM6 (ENSRFEG00010013031) #35	FMNL3 (ENSRFEG00010012912) #37
Megabat	MODERN SPECIES	2064															ENSPVAG00000006718	LIMA1 (ENSPVAG00000006717) #22	CERS5 (ENSPVAG00000006713) #23	COX14 (ENSPVAG00000006711) #24	GPD1 (ENSPVAG00000006710) #25	SMARCD1 (ENSPVAG00000006702) #26	ASIC1 (ENSPVAG00000006699) #27	RACGAP1 (ENSPVAG00000006697) #28	AQP6 (ENSPVAG00000006696) #29	AQP5 (ENSPVAG00000006695) #30	AQP2 (ENSPVAG00000006693) #31
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34
Suina	ANCESTRAL SPECIES	21	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT01070000257243	ENSGT00940000161557.b #30	ENSGT01090000263345	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35
Pig	MODERN SPECIES	13	SMIM41 (ENSSSCG00000052770)	ATG101 (ENSSSCG00000033687)	NR4A1 (ENSSSCG00000031321)	TAMALIN (ENSSSCG00000000234)	ACVR1B (ENSSSCG00000000233)	ACVRL1 (ENSSSCG00000000232)	ENSSSCG00000000231	FIGNL2 (ENSSSCG00000062762)	SCN8A (ENSSSCG00000000228)	SLC4A8 (ENSSSCG00000028060)	TMPRSS12 (ENSSSCG00000034783)	ATF1 (ENSSSCG00000016138) #18	DIP2B (ENSSSCG00000029196) #19	ENSSSCG00000026061 #21	LARP4 (ENSSSCG00000028516) #20	LIMA1 (ENSSSCG00000032269) #22	CERS5 (ENSSSCG00000024932) #23	COX14 (ENSSSCG00000056361) #24	GPD1 (ENSSSCG00000000214) #25	SMARCD1 (ENSSSCG00000000215) #26	ASIC1 (ENSSSCG00000000216) #27	RACGAP1 (ENSSSCG00000000217) #28	ENSSSCG00000054254	AQP6 (ENSSSCG00000000212) #29	ENSSSCG00000062534	AQP5 (ENSSSCG00000000211) #30	ENSSSCG00000058738	AQP2 (ENSSSCG00000021193) #31	FAIM2 (ENSSSCG00000000206) #32	ENSSSCG00000000207	BCDIN3D (ENSSSCG00000040144) #33
Chacoan peccary	MODERN SPECIES	899	BIN2 (ENSCWAG00000014884)	DAZAP2 (ENSCWAG00000015123) #10	SMAGP (ENSCWAG00000015312) #9	POU6F1 (ENSCWAG00000015369) #11	TFCP2 (ENSCWAG00000015429) #12	CSRNP2 (ENSCWAG00000015547) #13	LETMD1 (ENSCWAG00000015606) #14	SLC11A2 (ENSCWAG00000015833) #15	HIGD1C (ENSCWAG00000016169) #16	METTL7A (ENSCWAG00000016196) #17	TMPRSS12 (ENSCWAG00000016224)	ATF1 (ENSCWAG00000016274) #18	DIP2B (ENSCWAG00000016327) #19	LARP4 (ENSCWAG00000016605) #20	ENSCWAG00000016983 #21	LIMA1 (ENSCWAG00000017030) #22	CERS5 (ENSCWAG00000017116) #23	COX14 (ENSCWAG00000017195) #24	GPD1 (ENSCWAG00000017202) #25	SMARCD1 (ENSCWAG00000017243) #26	ASIC1 (ENSCWAG00000017429) #27	RACGAP1 (ENSCWAG00000017741) #28	AQP6 (ENSCWAG00000017761) #29	AQP5 (ENSCWAG00000017789) #30	AQP2 (ENSCWAG00000017838) #31	FAIM2 (ENSCWAG00000017875) #32	BCDIN3D (ENSCWAG00000018011) #33	NCKAP5L (ENSCWAG00000018044) #34	TMBIM6 (ENSCWAG00000018104) #35	FMNL3 (ENSCWAG00000018187) #37	PRPF40B (ENSCWAG00000018262)
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Camelidae	ANCESTRAL SPECIES	27	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Alpaca	MODERN SPECIES	2218										METTL7A (ENSVPAG00000010140) #17	ENSVPAG00000010139	ATF1 (ENSVPAG00000010138) #18	DIP2B (ENSVPAG00000010137) #19	LARP4 (ENSVPAG00000010136) #20	ENSVPAG00000010135	LIMA1 (ENSVPAG00000010134) #22	COX14 (ENSVPAG00000010132) #24
Arabian camel	MODERN SPECIES	3	BIN2 (ENSCDRG00005013528)	SMAGP (ENSCDRG00005013680) #9	DAZAP2 (ENSCDRG00005013743) #10	POU6F1 (ENSCDRG00005014094) #11	TFCP2 (ENSCDRG00005003336) #12	CSRNP2 (ENSCDRG00005003407) #13	LETMD1 (ENSCDRG00005003475) #14	SLC11A2 (ENSCDRG00005003638) #15	HIGD1C (ENSCDRG00005003927) #16	METTL7A (ENSCDRG00005003947) #17	TMPRSS12 (ENSCDRG00005003974)	ATF1 (ENSCDRG00005004036) #18	DIP2B (ENSCDRG00005004098) #19	LARP4 (ENSCDRG00005004368) #20	ENSCDRG00005004665	LIMA1 (ENSCDRG00005004688) #22	ENSCDRG00005004744 #23	ENSCDRG00005004769 #23	ENSCDRG00005004803 #24	GPD1 (ENSCDRG00005004815) #25	SMARCD1 (ENSCDRG00005004856) #26	ASIC1 (ENSCDRG00005005067) #27	RACGAP1 (ENSCDRG00005005150) #28	AQP6 (ENSCDRG00005005193) #29	AQP5 (ENSCDRG00005005200) #30	AQP2 (ENSCDRG00005005216) #31	FAIM2 (ENSCDRG00005005232) #32	BCDIN3D (ENSCDRG00005005337) #33	NCKAP5L (ENSCDRG00005005281) #34	TMBIM6 (ENSCDRG00005005361) #35	FMNL3 (ENSCDRG00005005419) #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l #15	ENSGT00940000154786.f.a.b #17	ENSGT00940000155330.m.b #15	ENSGT00940000154786.f.a.a #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Yarkand deer	MODERN SPECIES	22	LETMD1 (ENSCHYG00000002080) #14	ENSCHYG00000002213 #15	ENSCHYG00000002382 #15	ENSCHYG00000002413 #17	ENSCHYG00000002428	HIGD1C (ENSCHYG00000002436) #16	ENSCHYG00000002448 #17	ENSCHYG00000002462	TMPRSS12 (ENSCHYG00000002468)	ATF1 (ENSCHYG00000002492) #18	DIP2B (ENSCHYG00000002542) #19	ENSCHYG00000002667	ENSCHYG00000002677	LARP4 (ENSCHYG00000002689) #20	ENSCHYG00000002739	LIMA1 (ENSCHYG00000002754) #22	CERS5 (ENSCHYG00000002775) #23	ENSCHYG00000002799 #24	GPD1 (ENSCHYG00000002811) #25	SMARCD1 (ENSCHYG00000002846) #26	ASIC1 (ENSCHYG00000002925) #27	RACGAP1 (ENSCHYG00000002976) #28	AQP6 (ENSCHYG00000003038) #29	AQP5 (ENSCHYG00000003046) #30	AQP2 (ENSCHYG00000003063) #31	FAIM2 (ENSCHYG00000003080) #32	BCDIN3D (ENSCHYG00000003105) #33	NCKAP5L (ENSCHYG00000003118) #34	TMBIM6 (ENSCHYG00000003153) #35	FMNL3 (ENSCHYG00000003210) #37	ENSCHYG00000003405
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l #15	ENSGT00940000154786.f.a.b #17	ENSGT00940000155330.m.b #15	ENSGT00940000154786.f.a.a #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37
Siberian musk deer	MODERN SPECIES	320	POU6F1 (ENSMMSG00000018438) #11	TFCP2 (ENSMMSG00000018349) #12	CSRNP2 (ENSMMSG00000018302) #13	LETMD1 (ENSMMSG00000018148) #14	ENSMMSG00000018041 #15	ENSMMSG00000017883 #15	METTL7A (ENSMMSG00000017841) #17	ENSMMSG00000017001 #15	HIGD1C (ENSMMSG00000016946) #16	ENSMMSG00000016928 #17	TMPRSS12 (ENSMMSG00000016871)	ENSMMSG00000016835 #18	DIP2B (ENSMMSG00000016350) #19	ENSMMSG00000016204 #20	ENSMMSG00000016161	LIMA1 (ENSMMSG00000016083) #22	CERS5 (ENSMMSG00000016047) #23	ENSMMSG00000016024 #24	GPD1 (ENSMMSG00000015936) #25	SMARCD1 (ENSMMSG00000015795) #26	ASIC1 (ENSMMSG00000015664) #27	RACGAP1 (ENSMMSG00000015616) #28	AQP6 (ENSMMSG00000015598) #29	AQP5 (ENSMMSG00000015578) #30	AQP2 (ENSMMSG00000015558) #31	FAIM2 (ENSMMSG00000015530) #32	BCDIN3D (ENSMMSG00000015515) #33	NCKAP5L (ENSMMSG00000015482) #34	TMBIM6 (ENSMMSG00000015448) #35	FMNL3 (ENSMMSG00000015295) #37	PRPF40B (ENSMMSG00000015184)
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l #15	ENSGT00940000154786.f.a.b #17	ENSGT00940000155330.m.b #15	ENSGT00940000154786.f.a.a #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.bb.b #35	ENSGT00940000159962 #37
Caprinae	ANCESTRAL SPECIES		ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l #15	ENSGT00940000155330.m.b #15	ENSGT00940000154786.f.a.a #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a.c #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00910000147121	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.bb.b #35	ENSGT00940000159962 #37
Rambouillet Sheep	MODERN SPECIES	19	TFCP2 (ENSOARG00020019795) #12	CSRNP2 (ENSOARG00020020021) #13	LETMD1 (ENSOARG00020020065) #14	ENSOARG00020020191 #15	ENSOARG00020020745 #17	ENSOARG00020020771 #15	HIGD1C (ENSOARG00020020906) #16	ENSOARG00020020942 #17	TMPRSS12 (ENSOARG00020020971)	ATF1 (ENSOARG00020021026) #18	DIP2B (ENSOARG00020021074) #19	ENSOARG00020021473	ENSOARG00020021538 #20	ENSOARG00020023257	ENSOARG00020023263	LIMA1 (ENSOARG00020023296) #22	ENSOARG00020023406 #23	COX14 (ENSOARG00020023432) #24	GPD1 (ENSOARG00020023447) #25	SMARCD1 (ENSOARG00020023519) #26	ASIC1 (ENSOARG00020023731) #27	RACGAP1 (ENSOARG00020023860) #28	AQP6 (ENSOARG00020023881) #29	AQP5 (ENSOARG00020023923) #30	AQP2 (ENSOARG00020023932) #31	FAIM2 (ENSOARG00020023956) #32	BCDIN3D (ENSOARG00020023998) #33	NCKAP5L (ENSOARG00020000181) #34	ENSOARG00020000307 #35	FMNL3 (ENSOARG00020000387) #37	PRPF40B (ENSOARG00020000603)
Goat	MODERN SPECIES	24	ENSCHIG00000026367 #11	TFCP2 (ENSCHIG00000022175) #12	CSRNP2 (ENSCHIG00000017177) #13	LETMD1 (ENSCHIG00000008272) #14	ENSCHIG00000026028 #15	ENSCHIG00000023871 #15	ENSCHIG00000018958 #17	ENSCHIG00000012991 #15	HIGD1C (ENSCHIG00000026601) #16	ENSCHIG00000021113 #17	TMPRSS12 (ENSCHIG00000023016)	ATF1 (ENSCHIG00000016898) #18	DIP2B (ENSCHIG00000009546) #19	LARP4 (ENSCHIG00000025965) #20	ENSCHIG00000020047	LIMA1 (ENSCHIG00000026369) #22	ENSCHIG00000010672 #23	COX14 (ENSCHIG00000007195) #24	GPD1 (ENSCHIG00000020256) #25	SMARCD1 (ENSCHIG00000016287) #26	ENSCHIG00000008241	ASIC1 (ENSCHIG00000026006) #27	RACGAP1 (ENSCHIG00000009875) #28	AQP6 (ENSCHIG00000013540) #29	AQP5 (ENSCHIG00000009412) #30	AQP2 (ENSCHIG00000024043) #31	FAIM2 (ENSCHIG00000019021) #32	BCDIN3D (ENSCHIG00000014358) #33	NCKAP5L (ENSCHIG00000027024) #34	TMBIM6 (ENSCHIG00000001154) #35	FMNL3 (ENSCHIG00000015654) #37
Bovinae	ANCESTRAL SPECIES	17	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l.b.a #15	ENSGT00940000154786.f.a.b #17	ENSGT00940000155330.m.b #15	ENSGT00940000154786.f.a.a #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00390000017639.c	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.bb.b #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Bos	ANCESTRAL SPECIES	2	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l.b.a #15	ENSGT00940000154786.f.a.b #17	ENSGT00940000155330.m.b #15	ENSGT00940000154786.f.a.a #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00390000017639.c	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.bb.b #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l.b.a #15	ENSGT00940000154786.f.a.b #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00390000017639.c	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.bb.b #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Domestic yak	MODERN SPECIES	24	POU6F1 (ENSBGRG00000004365) #11	TFCP2 (ENSBGRG00000004241) #12	CSRNP2 (ENSBGRG00000004209) #13	LETMD1 (ENSBGRG00000004075) #14	SLC11A2 (ENSBGRG00000004038) #15	HIGD1C (ENSBGRG00000004019) #16	ENSBGRG00000004006 #17	ENSBGRG00000003989 #17	ENSBGRG00000003970	TMPRSS12 (ENSBGRG00000003922)	ATF1 (ENSBGRG00000003877) #18	ENSBGRG00000003849	DIP2B (ENSBGRG00000003661) #19	LARP4 (ENSBGRG00000003121) #20	ENSBGRG00000003038	LIMA1 (ENSBGRG00000002970) #22	CERS5 (ENSBGRG00000002954) #23	COX14 (ENSBGRG00000002947) #24	GPD1 (ENSBGRG00000002916) #25	SMARCD1 (ENSBGRG00000002849) #26	ASIC1 (ENSBGRG00000002768) #27	RACGAP1 (ENSBGRG00000002692) #28	AQP6 (ENSBGRG00000002662) #29	AQP5 (ENSBGRG00000002644) #30	AQP2 (ENSBGRG00000002620) #31	FAIM2 (ENSBGRG00000002579) #32	BCDIN3D (ENSBGRG00000002571) #33	NCKAP5L (ENSBGRG00000002464) #34	TMBIM6 (ENSBGRG00000002428) #35	FMNL3 (ENSBGRG00000002044) #37	PRPF40B (ENSBGRG00000001878)
Wild yak	MODERN SPECIES	454					ENSBMUG00000016106 #15	ENSBMUG00000015149 #17	ENSBMUG00000015085 #15	HIGD1C (ENSBMUG00000015010) #16	ENSBMUG00000014994 #17	ENSBMUG00000014969	TMPRSS12 (ENSBMUG00000014956)	ATF1 (ENSBMUG00000014944) #18	DIP2B (ENSBMUG00000014928) #19	LARP4 (ENSBMUG00000014861) #20	ENSBMUG00000014751	LIMA1 (ENSBMUG00000014740) #22	CERS5 (ENSBMUG00000014718) #23	ENSBMUG00000014692 #24	GPD1 (ENSBMUG00000014660) #25	SMARCD1 (ENSBMUG00000013916) #26	ENSBMUG00000013453 #27
Bos_b	ANCESTRAL SPECIES	4	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330.l.a #15	ENSGT00940000154786.f.a.b #17	ENSGT00940000155330.m.b #15	ENSGT00940000154786.f.a.a #17	ENSGT00940000155330.m.a #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00390000017639.c	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.bb.b #35	ENSGT00940000159962 #37	ENSGT00930000150980.b	ENSGT00940000162031
Hybrid Bos Indicus	MODERN SPECIES	24	CSRNP2 (ENSBIXG00005002832) #13	LETMD1 (ENSBIXG00005002848) #14	ENSBIXG00005005653 #17	ENSBIXG00005017599 #17	ENSBIXG00005002878 #15	ENSBIXG00005017973 #15	ENSBIXG00005018023	ENSBIXG00005018045 #17	ENSBIXG00005018062	TMPRSS12 (ENSBIXG00005007807)	ATF1 (ENSBIXG00005018105) #18	ENSBIXG00005018114	DIP2B (ENSBIXG00005018135) #19	LARP4 (ENSBIXG00005018243) #20	ENSBIXG00005018258	LIMA1 (ENSBIXG00005018314) #22	CERS5 (ENSBIXG00005018345) #23	ENSBIXG00005018391 #24	GPD1 (ENSBIXG00005018431) #25	SMARCD1 (ENSBIXG00005002988) #26	ASIC1 (ENSBIXG00005018518) #27	RACGAP1 (ENSBIXG00005006244) #28	ENSBIXG00005003033 #29	AQP2 (ENSBIXG00005003048) #31	FAIM2 (ENSBIXG00005018825) #32	BCDIN3D (ENSBIXG00005003070) #33	NCKAP5L (ENSBIXG00005018903) #34	TMBIM6 (ENSBIXG00005003088) #35	FMNL3 (ENSBIXG00005019046) #37	PRPF40B (ENSBIXG00005019251)	FAM186B (ENSBIXG00005006144)
Cow	MODERN SPECIES	24	LETMD1 (ENSBTAG00000010924) #14	SLC11A2 (ENSBTAG00000032914) #15	ENSBTAG00000049198 #17	ENSBTAG00000032902 #15	ENSBTAG00000032899 #17	ENSBTAG00000002355 #15	HIGD1C (ENSBTAG00000047358) #16	METTL7A (ENSBTAG00000025005) #17	ENSBTAG00000038893	TMPRSS12 (ENSBTAG00000050872)	ATF1 (ENSBTAG00000018131) #18	DIP2B (ENSBTAG00000005246) #19	ENSBTAG00000032790	LARP4 (ENSBTAG00000017164) #20	FAM186A (ENSBTAG00000023546)	LIMA1 (ENSBTAG00000012342) #22	CERS5 (ENSBTAG00000017395) #23	COX14 (ENSBTAG00000000808) #24	GPD1 (ENSBTAG00000016296) #25	SMARCD1 (ENSBTAG00000037935) #26	ASIC1 (ENSBTAG00000000970) #27	RACGAP1 (ENSBTAG00000012784) #28	AQP5 (ENSBTAG00000026813) #29	AQP2 (ENSBTAG00000008374) #31	FAIM2 (ENSBTAG00000017504) #32	BCDIN3D (ENSBTAG00000017781) #33	NCKAP5L (ENSBTAG00000004851) #34	TMBIM6 (ENSBTAG00000018588) #35	FMNL3 (ENSBTAG00000016593) #37	PRPF40B (ENSBTAG00000016589)	FAM186B (ENSBTAG00000019283)
American bison	MODERN SPECIES	3297	ENSBBBG00000021846 #15	ENSBBBG00000021855 #17	ENSBBBG00000005816 #15	ENSBBBG00000022123 #15	HIGD1C (ENSBBBG00000022141) #16	ENSBBBG00000022162	ENSBBBG00000005851	ENSBBBG00000022196 #17	ENSBBBG00000022201	TMPRSS12 (ENSBBBG00000005856)	ATF1 (ENSBBBG00000022224) #18	ENSBBBG00000005861	DIP2B (ENSBBBG00000005867) #19	LARP4 (ENSBBBG00000022641) #20	ENSBBBG00000005973	LIMA1 (ENSBBBG00000022743) #22	CERS5 (ENSBBBG00000022759) #23	ENSBBBG00000022762 #24	GPD1 (ENSBBBG00000005992) #25	SMARCD1 (ENSBBBG00000022825) #26	ASIC1 (ENSBBBG00000022870) #27	RACGAP1 (ENSBBBG00000022976) #28	AQP6 (ENSBBBG00000022994) #29	AQP5 (ENSBBBG00000007531) #30	AQP2 (ENSBBBG00000023008) #31	FAIM2 (ENSBBBG00000006042) #32	BCDIN3D (ENSBBBG00000023040) #33	NCKAP5L (ENSBBBG00000023063) #34	ENSBBBG00000023098 #35	FMNL3 (ENSBBBG00000000454) #37	PRPF40B (ENSBBBG00000000351)
Cetacea	ANCESTRAL SPECIES	8	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Blue whale	MODERN SPECIES	1	ENSBMSG00010020051	SMAGP (ENSBMSG00010020028) #9	ENSBMSG00010019971 #10	POU6F1 (ENSBMSG00010019939) #11	TFCP2 (ENSBMSG00010019886) #12	LETMD1 (ENSBMSG00010019748) #14	SLC11A2 (ENSBMSG00010019594) #15	HIGD1C (ENSBMSG00010019525) #16	ENSBMSG00010019512	ENSBMSG00010019492 #17	TMPRSS12 (ENSBMSG00010019470)	ATF1 (ENSBMSG00010019447) #18	DIP2B (ENSBMSG00010019377) #19	LARP4 (ENSBMSG00010019257) #20	ENSBMSG00010019191 #21	ENSBMSG00010019154 #22	ENSBMSG00010019117 #23	ENSBMSG00010019082 #23	ENSBMSG00010019052 #24	GPD1 (ENSBMSG00010019000) #25	ENSBMSG00010018920 #26	ASIC1 (ENSBMSG00010018805) #27	RACGAP1 (ENSBMSG00010018749) #28	AQP6 (ENSBMSG00010018692) #29	AQP5 (ENSBMSG00010018670) #30	AQP2 (ENSBMSG00010018640) #31	FAIM2 (ENSBMSG00010018618) #32	BCDIN3D (ENSBMSG00010018604) #33	NCKAP5L (ENSBMSG00010018586) #34	TMBIM6 (ENSBMSG00010018550) #35	FMNL3 (ENSBMSG00010018480) #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629.f #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786.e #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000203730	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190.a.b #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Beluga whale	MODERN SPECIES	39	SMAGP (ENSDLEG00000006720) #9	DAZAP2 (ENSDLEG00000006724) #10	POU6F1 (ENSDLEG00000006732) #11	ENSDLEG00000006802 #12	ENSDLEG00000006804 #12	CSRNP2 (ENSDLEG00000006811) #13	LETMD1 (ENSDLEG00000006817) #14	SLC11A2 (ENSDLEG00000006858) #15	HIGD1C (ENSDLEG00000006958) #16	METTL7A (ENSDLEG00000006970) #17	TMPRSS12 (ENSDLEG00000006974)	ATF1 (ENSDLEG00000006983) #18	DIP2B (ENSDLEG00000007315) #19	LARP4 (ENSDLEG00000015261) #20	ENSDLEG00000015550	LIMA1 (ENSDLEG00000015569) #22	CERS5 (ENSDLEG00000015590) #23	ENSDLEG00000015620 #24	GPD1 (ENSDLEG00000015629) #25	SMARCD1 (ENSDLEG00000015671) #26	ASIC1 (ENSDLEG00000015917) #27	RACGAP1 (ENSDLEG00000016029) #28	AQP6 (ENSDLEG00000016053) #29	AQP5 (ENSDLEG00000016064) #30	AQP2 (ENSDLEG00000016070) #31	FAIM2 (ENSDLEG00000016092) #32	BCDIN3D (ENSDLEG00000016113) #33	NCKAP5L (ENSDLEG00000016120) #34	TMBIM6 (ENSDLEG00000016148) #35	FMNL3 (ENSDLEG00000016175) #37	PRPF40B (ENSDLEG00000016312)
Narwhal	MODERN SPECIES	313	BIN2 (ENSMMNG00015014676)	SMAGP (ENSMMNG00015014658) #9	DAZAP2 (ENSMMNG00015014628) #10	POU6F1 (ENSMMNG00015014586) #11	TFCP2 (ENSMMNG00015014558) #12	CSRNP2 (ENSMMNG00015014531) #13	LETMD1 (ENSMMNG00015014491) #14	SLC11A2 (ENSMMNG00015014416) #15	HIGD1C (ENSMMNG00015014381) #16	METTL7A (ENSMMNG00015014365) #17	TMPRSS12 (ENSMMNG00015014350)	ATF1 (ENSMMNG00015014323) #18	DIP2B (ENSMMNG00015014299) #19	LARP4 (ENSMMNG00015014255) #20	ENSMMNG00015014228	LIMA1 (ENSMMNG00015014204) #22	CERS5 (ENSMMNG00015014184) #23	ENSMMNG00015014177 #24	GPD1 (ENSMMNG00015014170) #25	ENSMMNG00015014146 #26	ASIC1 (ENSMMNG00015014101) #27	RACGAP1 (ENSMMNG00015014069) #28	AQP6 (ENSMMNG00015014051) #29	AQP5 (ENSMMNG00015014040) #30	AQP2 (ENSMMNG00015014027) #31	FAIM2 (ENSMMNG00015014009) #32	BCDIN3D (ENSMMNG00015013997) #33	NCKAP5L (ENSMMNG00015013977) #34	TMBIM6 (ENSMMNG00015013952) #35	FMNL3 (ENSMMNG00015013853) #37	PRPF40B (ENSMMNG00015013762)
Vaquita	MODERN SPECIES	1	CELA1 (ENSPSNG00000008108) #7	BIN2 (ENSPSNG00000008169)	DAZAP2 (ENSPSNG00000008293) #10	SMAGP (ENSPSNG00000008431) #9	POU6F1 (ENSPSNG00000008493) #11	TFCP2 (ENSPSNG00000008560) #12	CSRNP2 (ENSPSNG00000008630) #13	LETMD1 (ENSPSNG00000008679) #14	SLC11A2 (ENSPSNG00000008801) #15	HIGD1C (ENSPSNG00000008962) #16	ENSPSNG00000008989 #17	TMPRSS12 (ENSPSNG00000009020)	ATF1 (ENSPSNG00000009073) #18	DIP2B (ENSPSNG00000009123) #19	LARP4 (ENSPSNG00000009414) #20	LIMA1 (ENSPSNG00000009785) #22	CERS5 (ENSPSNG00000009960) #23	GPD1 (ENSPSNG00000010118) #25	SMARCD1 (ENSPSNG00000010298) #26	ASIC1 (ENSPSNG00000010445) #27	RACGAP1 (ENSPSNG00000010669) #28	ENSPSNG00000010688	AQP6 (ENSPSNG00000010729) #29	AQP5 (ENSPSNG00000010789) #30	AQP2 (ENSPSNG00000010847) #31	FAIM2 (ENSPSNG00000010923) #32	BCDIN3D (ENSPSNG00000011042) #33	NCKAP5L (ENSPSNG00000011101) #34	ENSPSNG00000011171	TMBIM6 (ENSPSNG00000009712) #35	FMNL3 (ENSPSNG00000009775) #37
Dolphin	MODERN SPECIES	635																LIMA1 (ENSTTRG00000001015) #22	CERS5 (ENSTTRG00000001014) #23	GPD1 (ENSTTRG00000001012) #25	SMARCD1 (ENSTTRG00000001010) #26	ASIC1 (ENSTTRG00000001008) #27	RACGAP1 (ENSTTRG00000001006) #28	AQP6 (ENSTTRG00000001005) #29	AQP5 (ENSTTRG00000001004) #30	AQP2 (ENSTTRG00000001003) #31	FAIM2 (ENSTTRG00000001002) #32	BCDIN3D (ENSTTRG00000001001) #33	ENSTTRG00000021406 #34	NCKAP5L (ENSTTRG00000001000) #34	TMBIM6 (ENSTTRG00000000999) #35
Sperm whale	MODERN SPECIES	17	GALNT6 (ENSPCTG00005017417)	CELA1 (ENSPCTG00005017477) #7	BIN2 (ENSPCTG00005017577)	SMAGP (ENSPCTG00005017693) #9	TFCP2 (ENSPCTG00005017758) #12	CSRNP2 (ENSPCTG00005017851) #13	LETMD1 (ENSPCTG00005017894) #14	SLC11A2 (ENSPCTG00005018048) #15	HIGD1C (ENSPCTG00005018312) #16	ENSPCTG00005006742 #17	TMPRSS12 (ENSPCTG00005006754)	ENSPCTG00005006806 #18	DIP2B (ENSPCTG00005006865) #19	LARP4 (ENSPCTG00005007174) #20	ENSPCTG00005007353	LIMA1 (ENSPCTG00005007407) #22	BCDIN3D (ENSPCTG00005007543) #33	FAIM2 (ENSPCTG00005007571) #32	AQP2 (ENSPCTG00005007639) #31	AQP5 (ENSPCTG00005007658) #30	AQP6 (ENSPCTG00005007667) #29	RACGAP1 (ENSPCTG00005007703) #28	ENSPCTG00005007783 #27	TMBIM6 (ENSPCTG00005007808) #35	ENSPCTG00005007869 #37	PRPF40B (ENSPCTG00005007929)	ENSPCTG00005008137	MCRS1 (ENSPCTG00005008165)	KCNH3 (ENSPCTG00005008212)	SPATS2 (ENSPCTG00005008268)	ENSPCTG00005008318
Atlantogenata	ANCESTRAL SPECIES	33	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Xenarthra	ANCESTRAL SPECIES	170	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22
Armadillo	MODERN SPECIES	1062	DAZAP2 (ENSDNOG00000040311) #10	POU6F1 (ENSDNOG00000009291) #11	TFCP2 (ENSDNOG00000017309) #12	CSRNP2 (ENSDNOG00000023591) #13	LETMD1 (ENSDNOG00000047600) #14	SLC11A2 (ENSDNOG00000000724) #15	HIGD1C (ENSDNOG00000033730) #16	ENSDNOG00000036666 #17	ENSDNOG00000031675 #17	ENSDNOG00000042206	TMPRSS12 (ENSDNOG00000009890)	ATF1 (ENSDNOG00000006951) #18	DIP2B (ENSDNOG00000004136) #19	LARP4 (ENSDNOG00000038525) #20	FAM186A (ENSDNOG00000031578) #21	LIMA1 (ENSDNOG00000031237) #22
Sloth	MODERN SPECIES	3189																LIMA1 (ENSCHOG00000007913) #22
Afrotheria	ANCESTRAL SPECIES	40	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Tenrec	MODERN SPECIES	3595																LIMA1 (ENSETEG00000003254) #22	CERS5 (ENSETEG00000003248) #23
Afrotheria_a	ANCESTRAL SPECIES	40	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000162804 #16	ENSGT00940000154786 #17	ENSGT00940000161878	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Hyrax	MODERN SPECIES	2946																LIMA1 (ENSPCAG00000006159) #22	CERS5 (ENSPCAG00000006092) #23
Elephant	MODERN SPECIES	196	BIN2 (ENSLAFG00000002387)	SMAGP (ENSLAFG00000020700) #9	DAZAP2 (ENSLAFG00000009982) #10	POU6F1 (ENSLAFG00000020901) #11	TFCP2 (ENSLAFG00000009123) #12	CSRNP2 (ENSLAFG00000016619) #13	LETMD1 (ENSLAFG00000016614) #14	SLC11A2 (ENSLAFG00000016606) #15	HIGD1C (ENSLAFG00000020550) #16	METTL7A (ENSLAFG00000011247) #17	TMPRSS12 (ENSLAFG00000011246)	ENSLAFG00000000441 #18	DIP2B (ENSLAFG00000005165) #19	LARP4 (ENSLAFG00000005160) #20	ENSLAFG00000026252 #21	LIMA1 (ENSLAFG00000000645) #22	CERS5 (ENSLAFG00000000642) #23	COX14 (ENSLAFG00000000641) #24	GPD1 (ENSLAFG00000000639) #25	SMARCD1 (ENSLAFG00000000638) #26	ASIC1 (ENSLAFG00000000634) #27	RACGAP1 (ENSLAFG00000011547) #28	AQP6 (ENSLAFG00000011544) #29	AQP2 (ENSLAFG00000022222) #31	FAIM2 (ENSLAFG00000016014) #32	BCDIN3D (ENSLAFG00000018388) #33	NCKAP5L (ENSLAFG00000014723) #34	ENSLAFG00000014722	TMBIM6 (ENSLAFG00000014715) #35	FMNL3 (ENSLAFG00000014702) #37	PRPF40B (ENSLAFG00000014700)
Marsupialia	ANCESTRAL SPECIES	24	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000154786 #17	ENSGT00940000161878.a.b	ENSGT00940000161878.b	ENSGT00940000161878.a.a	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000163376 #21	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a #34	ENSGT01050000244940.a.a.i #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000154786 #17	ENSGT00940000161878.a.b	ENSGT00940000161878.b	ENSGT00940000161878.a.a	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a.g #34	ENSGT01050000244940.a.a.i #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Diprotodontia	ANCESTRAL SPECIES	29	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000154786 #17	ENSGT00940000161878.a.b	ENSGT00940000161878.b	ENSGT00940000161878.a.a	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a.g #34	ENSGT01050000244940.a.a.i #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Diprotodontia_a	ANCESTRAL SPECIES	29	ENSGT00950000182882.A.a	ENSGT00390000010077 #9	ENSGT00390000000685 #10	ENSGT00940000160106 #11	ENSGT00940000157629 #12	ENSGT00950000183072.b.a #13	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000155330 #15	ENSGT00940000154786 #17	ENSGT00940000161878.a.b	ENSGT00940000161878.b	ENSGT00940000161878.a.a	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161557.b #30	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00530000063607.a.g #34	ENSGT01050000244940.a.a.i #35	ENSGT00940000159962 #37	ENSGT00930000150980.b
Common wonbat	MODERN SPECIES	1128	ENSVURG00010007496	ENSVURG00010007477 #9	ENSVURG00010007459 #10	POU6F1 (ENSVURG00010007440) #11	TFCP2 (ENSVURG00010007416) #12	CSRNP2 (ENSVURG00010007407) #13	LETMD1 (ENSVURG00010007360) #14	SLC11A2 (ENSVURG00010007263) #15	METTL7A (ENSVURG00010007245) #17	ENSVURG00010007237	ENSVURG00010007229	ENSVURG00010007214 #18	ENSVURG00010007206	DIP2B (ENSVURG00010007105) #19	LARP4 (ENSVURG00010006998) #20	LIMA1 (ENSVURG00010006976) #22	CERS5 (ENSVURG00010006958) #23	COX14 (ENSVURG00010006953) #24	GPD1 (ENSVURG00010006934) #25	ENSVURG00010006919 #26	ASIC1 (ENSVURG00010006904) #27	RACGAP1 (ENSVURG00010006889) #28	AQP6 (ENSVURG00010006877) #29	AQP5 (ENSVURG00010006872) #30	AQP2 (ENSVURG00010006868) #31	FAIM2 (ENSVURG00010006852) #32	BCDIN3D (ENSVURG00010006846) #33	NCKAP5L (ENSVURG00010006833) #34	ENSVURG00010006816 #35	FMNL3 (ENSVURG00010006771) #37	PRPF40B (ENSVURG00010006733)
koala	MODERN SPECIES	165	POU6F1 (ENSPCIG00000016117) #11	TFCP2 (ENSPCIG00000016118) #12	CSRNP2 (ENSPCIG00000016119) #13	LETMD1 (ENSPCIG00000016120) #14	SLC11A2 (ENSPCIG00000016121) #15	METTL7A (ENSPCIG00000031107) #17	ENSPCIG00000016123	ENSPCIG00000000211	ENSPCIG00000000230	ATF1 (ENSPCIG00000000249) #18	DIP2B (ENSPCIG00000000312) #19	LARP4 (ENSPCIG00000000384) #20	ENSPCIG00000000431 #21	ENSPCIG00000000470	ENSPCIG00000031307	LIMA1 (ENSPCIG00000009715) #22	CERS5 (ENSPCIG00000009711) #23	ENSPCIG00000034696 #24	GPD1 (ENSPCIG00000009706) #25	SMARCD1 (ENSPCIG00000007804) #26	ASIC1 (ENSPCIG00000007766) #27	RACGAP1 (ENSPCIG00000007764) #28	AQP6 (ENSPCIG00000007761) #29	ENSPCIG00000007737 #30	AQP2 (ENSPCIG00000007734) #31	ENSPCIG00000007733	FAIM2 (ENSPCIG00000026819) #32	BCDIN3D (ENSPCIG00000026825) #33	NCKAP5L (ENSPCIG00000026823) #34	ENSPCIG00000026826 #35	FMNL3 (ENSPCIG00000026832) #37
Tasmanian devil	MODERN SPECIES	4	POU6F1 (ENSSHAG00000003829) #11	TFCP2 (ENSSHAG00000025031) #12	CSRNP2 (ENSSHAG00000026283) #13	LETMD1 (ENSSHAG00000002620) #14	ENSSHAG00000026379 #15	ENSSHAG00000004038 #15	METTL7A (ENSSHAG00000021209) #17	ENSSHAG00000001705	ENSSHAG00000000245	ENSSHAG00000001466	ATF1 (ENSSHAG00000004637) #18	DIP2B (ENSSHAG00000005854) #19	LARP4 (ENSSHAG00000024454) #20	ENSSHAG00000001354	ENSSHAG00000021294	LIMA1 (ENSSHAG00000007318) #22	CERS5 (ENSSHAG00000025994) #23	ENSSHAG00000026976 #24	SMARCD1 (ENSSHAG00000025174) #26	ASIC1 (ENSSHAG00000006030) #27	RACGAP1 (ENSSHAG00000004789) #28	AQP6 (ENSSHAG00000023787) #29	AQP5 (ENSSHAG00000003796) #30	AQP2 (ENSSHAG00000026739) #31	FAIM2 (ENSSHAG00000031408) #32	BCDIN3D (ENSSHAG00000011007) #33	NCKAP5L (ENSSHAG00000010610) #34	ENSSHAG00000023527 #35	FMNL3 (ENSSHAG00000009503) #37	PRPF40B (ENSSHAG00000009400)	MCRS1 (ENSSHAG00000008687)
Opossum	MODERN SPECIES	7	ENSMODG00000049220	ENSMODG00000044790	ENSMODG00000046295	ENSMODG00000021150	ENSMODG00000050385	ZNF641 (ENSMODG00000037217)	ENSMODG00000038372	CCDC184 (ENSMODG00000047381)	ENSMODG00000040839	LRIG3 (ENSMODG00000004837)	ENSMODG00000004844 #20	ENSMODG00000004923 #19	ENSMODG00000004933	ENSMODG00000005093	SLC11A2 (ENSMODG00000005131) #15	ENSMODG00000040534 #22	RACGAP1 (ENSMODG00000004340) #28	FAIM2 (ENSMODG00000004300) #32	BCDIN3D (ENSMODG00000038337) #33	ENSMODG00000004277 #35	MCRS1 (ENSMODG00000004248)	ENSMODG00000004216	DNAJC22 (ENSMODG00000004199)	C1QL4 (ENSMODG00000004190)	ENSMODG00000028637	PRPH (ENSMODG00000004126)	ENSMODG00000039161	ENSMODG00000007387	CLEC4E (ENSMODG00000007337)	RAP1B (ENSMODG00000007323)	ENSMODG00000007267
Platypus	MODERN SPECIES	1	SLC4A8 (ENSOANG00000004862)	ENSOANG00000046483	ENSOANG00000042307 #9	DAZAP2 (ENSOANG00000036184) #10	POU6F1 (ENSOANG00000043815) #11	TFCP2 (ENSOANG00000005721) #12	CSRNP2 (ENSOANG00000037112) #13	ENSOANG00000046893 #14	SLC11A2 (ENSOANG00000002889) #15	ENSOANG00000040788 #16	METTL7A (ENSOANG00000047572) #17	ENSOANG00000002558	ATF1 (ENSOANG00000043541) #18	DIP2B (ENSOANG00000005438) #19	LARP4 (ENSOANG00000004373) #20	ENSOANG00000048077 #22	CERS5 (ENSOANG00000039960) #23	COX14 (ENSOANG00000050209) #24	SMARCD1 (ENSOANG00000038365) #26	ASIC1 (ENSOANG00000036088) #27	RACGAP1 (ENSOANG00000011736) #28	ENSOANG00000040259 #29	ENSOANG00000037216 #29	AQP5 (ENSOANG00000042744) #30	AQP2 (ENSOANG00000000427) #31	FAIM2 (ENSOANG00000046480) #32	BCDIN3D (ENSOANG00000050477) #33	ENSOANG00000012629	KRT80 (ENSOANG00000036218)	ENSOANG00000012632	ENSOANG00000012607
Sauria	ANCESTRAL SPECIES	25	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00960000186993	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000165535	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00390000008169	ENSGT00940000160612.c.a ##31
Archelosauria	ANCESTRAL SPECIES	26	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00960000186993	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000165535	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29
Cryptodira	ANCESTRAL SPECIES	25	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b.f	ENSGT00500000044852.b.e	ENSGT00940000161971	ENSGT00960000186993	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29
Testudinoidea	ANCESTRAL SPECIES	21	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b.f	ENSGT00500000044852.b.e	ENSGT00940000161971	ENSGT00960000186993	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29
Emydidae	ANCESTRAL SPECIES	49	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b.f	ENSGT00500000044852.b.e	ENSGT00940000161971	ENSGT00960000186993	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29
painted turtle	DUPLICATION
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	871	ENSCPBG00000019466	ENSCPBG00000019463	ENSCPBG00000019460	FIGNL2 (ENSCPBG00000019458)	ENSCPBG00000019456	ENSCPBG00000019454	ENSCPBG00000019452 #17	ENSCPBG00000019450 #17	SCN8A (ENSCPBG00000019431)	ENSCPBG00000019421	ATF1 (ENSCPBG00000019418) #18	DIP2B (ENSCPBG00000019413) #19	LARP4 (ENSCPBG00000019407) #20	ENSCPBG00000019405	ENSCPBG00000019402	ENSCPBG00000019395 #22	ENSCPBG00000019392 #22	CERS5 (ENSCPBG00000019389) #23	GPD1 (ENSCPBG00000019386) #25	SMARCD1 (ENSCPBG00000019381) #26	ASIC1 (ENSCPBG00000019376) #27	RACGAP1 (ENSCPBG00000019372) #28	AQP6 (ENSCPBG00000019271) #29
painted turtle	MODERN SPECIES	871	ENSCPBG00000019463	ENSCPBG00000019460	FIGNL2 (ENSCPBG00000019458)	ENSCPBG00000019456	ENSCPBG00000019454	ENSCPBG00000019452 #17	ENSCPBG00000019450 #17	SCN8A (ENSCPBG00000019431)	ENSCPBG00000019421	ATF1 (ENSCPBG00000019418) #18	DIP2B (ENSCPBG00000019413) #19	LARP4 (ENSCPBG00000019407) #20	ENSCPBG00000019405	ENSCPBG00000019402	ENSCPBG00000019395 #22	ENSCPBG00000019392 #22	CERS5 (ENSCPBG00000019389) #23	GPD1 (ENSCPBG00000019386) #25	SMARCD1 (ENSCPBG00000019381) #26	ASIC1 (ENSCPBG00000019376) #27	RACGAP1 (ENSCPBG00000019372) #28	AQP6 (ENSCPBG00000019271) #29
painted turtle	MODERN SPECIES	13	ENSCPBG00000026185	ENSCPBG00000026183	AKAP6 (ENSCPBG00000026181)	ARHGAP5 (ENSCPBG00000026180)	NUBPL (ENSCPBG00000026179)	DTD2 (ENSCPBG00000026177)	HEATR5A (ENSCPBG00000026015)	HECTD1 (ENSCPBG00000025954)	AP4S1 (ENSCPBG00000025936)	STRN3 (ENSCPBG00000025355)	COCH (ENSCPBG00000025281)	SCFD1 (ENSCPBG00000025264)	G2E3 (ENSCPBG00000025254)	PRKD1 (ENSCPBG00000025145)	FOXG1 (ENSCPBG00000025135)	ENSCPBG00000025134 #22	DLC1 (ENSCPBG00000025130)	TRMT9B (ENSCPBG00000025129)	LONRF1 (ENSCPBG00000025127)	PAICS (ENSCPBG00000025123)	ENSCPBG00000025122	PPAT (ENSCPBG00000025119)	AASDH (ENSCPBG00000025116)	CRACD (ENSCPBG00000025111)	CEP135 (ENSCPBG00000025094)	EXOC1 (ENSCPBG00000025085)	EXOC1L (ENSCPBG00000025084)	NMU (ENSCPBG00000025079)	PDCL2 (ENSCPBG00000025075)	CLOCK (ENSCPBG00000025068)	TMEM165 (ENSCPBG00000025063)
Three-toed box turtle	MODERN SPECIES	311	NR4A1 (ENSTMTG00000022023)	TAMALIN (ENSTMTG00000022032)	ACVR1B (ENSTMTG00000022039)	ENSTMTG00000022048	ENSTMTG00000022055	ENSTMTG00000016971	FIGNL2 (ENSTMTG00000016986)	SCN8A (ENSTMTG00000017016)	ENSTMTG00000017137 #17	ENSTMTG00000017144 #17	ENSTMTG00000017172	ATF1 (ENSTMTG00000017310) #18	DIP2B (ENSTMTG00000017331) #19	LARP4 (ENSTMTG00000017396) #20	ENSTMTG00000017428	LIMA1 (ENSTMTG00000017439) #22	CERS5 (ENSTMTG00000017456) #23	COX14 (ENSTMTG00000017469) #24	GPD1 (ENSTMTG00000017474) #25	SMARCD1 (ENSTMTG00000017490) #26	ASIC1 (ENSTMTG00000017514) #27	ENSTMTG00000017548	RACGAP1 (ENSTMTG00000017565) #28	AQP6 (ENSTMTG00000017616) #29
Testudinidae	ANCESTRAL SPECIES	25	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b.f	ENSGT00500000044852.b.e	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29
Goode s thornscrub tortoise	MODERN SPECIES	17	NR4A1 (ENSGEVG00005000057)	TAMALIN (ENSGEVG00005000070)	ACVR1B (ENSGEVG00005000089)	ENSGEVG00005000122	ENSGEVG00005000139	ENSGEVG00005000159	FIGNL2 (ENSGEVG00005000172)	SCN8A (ENSGEVG00005000242)	ENSGEVG00005000332 #17	ENSGEVG00005000340 #17	ENSGEVG00005000409	ATF1 (ENSGEVG00005000474) #18	DIP2B (ENSGEVG00005001834) #19	LARP4 (ENSGEVG00005003791) #20	ENSGEVG00005003812	LIMA1 (ENSGEVG00005003828) #22	CERS5 (ENSGEVG00005003858) #23	COX14 (ENSGEVG00005003870) #24	GPD1 (ENSGEVG00005003885) #25	SMARCD1 (ENSGEVG00005003899) #26	ASIC1 (ENSGEVG00005003923) #27	RACGAP1 (ENSGEVG00005003957) #28	AQP6 (ENSGEVG00005004013) #29	ENSGEVG00005004051	ENSGEVG00005004067	GPN1 (ENSGEVG00005004082)	ZNF512 (ENSGEVG00005004114)	ENSGEVG00005004138	ENSGEVG00005004154	GCKR (ENSGEVG00005004185)	ENSGEVG00005004211
Abingdon island giant tortoise	MODERN SPECIES	859														LARP4 (ENSCABG00000010976) #20	ENSCABG00000011161	LIMA1 (ENSCABG00000011163) #22	CERS5 (ENSCABG00000011168) #23	COX14 (ENSCABG00000011194) #24	GPD1 (ENSCABG00000011196) #25	SMARCD1 (ENSCABG00000011252) #26	ASIC1 (ENSCABG00000011258) #27	RACGAP1 (ENSCABG00000011263) #28	AQP6 (ENSCABG00000011272) #29
Chinese turtle	MODERN SPECIES	1705	ENSPSIG00000002673	ATG101 (ENSPSIG00000002653)	NR4A1 (ENSPSIG00000018018)	TAMALIN (ENSPSIG00000018003)	ACVR1B (ENSPSIG00000017901)	ENSPSIG00000017730	ANKRD33 (ENSPSIG00000017698)	FIGNL2 (ENSPSIG00000017691)	SCN8A (ENSPSIG00000016907)	ENSPSIG00000016849 #17	ENSPSIG00000016847 #17	ENSPSIG00000016842	ATF1 (ENSPSIG00000016772) #18	DIP2B (ENSPSIG00000016502) #19	LARP4 (ENSPSIG00000015867) #20	LIMA1 (ENSPSIG00000015768) #22	CERS5 (ENSPSIG00000014728) #23	GPD1 (ENSPSIG00000014596) #25	SMARCD1 (ENSPSIG00000014525) #26	ASIC1 (ENSPSIG00000012853) #27	RACGAP1 (ENSPSIG00000012088) #28	AQP6 (ENSPSIG00000011550) #29	ITGA5 (ENSPSIG00000010098)	GTSF1 (ENSPSIG00000009968)	ENSPSIG00000009839	NCKAP1L (ENSPSIG00000007682)	PDE1B (ENSPSIG00000011681)	PPP1R1A (ENSPSIG00000011665)
Archosauria	ANCESTRAL SPECIES	32	ENSGT00950000185385	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000165535	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28
Australian saltwater crocodile	MODERN SPECIES	7	NR4A1 (ENSCPRG00005001958)	ACVR1B (ENSCPRG00005001974)	ENSCPRG00005001977	ENSCPRG00005001981	ENSCPRG00005001986	ENSCPRG00005001996	FIGNL2 (ENSCPRG00005002002)	SCN8A (ENSCPRG00005002009)	ENSCPRG00005002023	ENSCPRG00005002027 #17	ENSCPRG00005002032 #17	ENSCPRG00005002037	ATF1 (ENSCPRG00005002046) #18	DIP2B (ENSCPRG00005002292) #19	LARP4 (ENSCPRG00005003596) #20	LIMA1 (ENSCPRG00005003602) #22	CERS5 (ENSCPRG00005003606) #23	ENSCPRG00005003610	GPD1 (ENSCPRG00005003613) #25	SMARCD1 (ENSCPRG00005003631) #26	ENSCPRG00005003759	ASIC1 (ENSCPRG00005003809) #27	RACGAP1 (ENSCPRG00005003815) #28	ENSCPRG00005003825	ENSCPRG00005003835	ENSCPRG00005003840	ENSCPRG00005003843	ENSCPRG00005003846	ENSCPRG00005003850	ENSCPRG00005003856	NAALADL1 (ENSCPRG00005003868)
Aves	ANCESTRAL SPECIES	37	ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28
Neognathae	ANCESTRAL SPECIES	31	ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b
Neognathae_b	ANCESTRAL SPECIES	30	ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT01090000260194	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712
Neognathae_c	ANCESTRAL SPECIES	34	ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200.bb #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b
Kakapo	MODERN SPECIES	15	B4GALNT1 (ENSSHBG00005020247)	PIP4K2C (ENSSHBG00005020243)	KIF5A (ENSSHBG00005020238)	DCTN2 (ENSSHBG00005020229)	MARS1 (ENSSHBG00005020180)	DDIT3 (ENSSHBG00005020168)	DTX3 (ENSSHBG00005020166)	ENSSHBG00005020162	ENSSHBG00005020123	ENSSHBG00005020106 #18	ENSSHBG00005020097 #17	ENSSHBG00005020089	ENSSHBG00005020080 #18	DIP2B (ENSSHBG00005012919) #19	LARP4 (ENSSHBG00005010760) #20	LIMA1 (ENSSHBG00005010576) #22	CERS5 (ENSSHBG00005010483) #23	ENSSHBG00005010452	GPD1 (ENSSHBG00005010424) #25	SMARCD1 (ENSSHBG00005010382) #26	ASIC1 (ENSSHBG00005010353) #27	RACGAP1 (ENSSHBG00005010312) #28	ENSSHBG00005010281	HDAC7 (ENSSHBG00005010242)	SLC48A1 (ENSSHBG00005010209)	RAPGEF3 (ENSSHBG00005010173)	ENDOU (ENSSHBG00005010133)	NEUROD4 (ENSSHBG00005010116)	ENSSHBG00005010094	HOXC4 (ENSSHBG00005000743)	HOXC5 (ENSSHBG00005000733)
Golden eagle	MODERN SPECIES	6	FMNL3 (ENSACCG00020008061) #37	ATG101 (ENSACCG00020008162)	NR4A1 (ENSACCG00020008170)	TAMALIN (ENSACCG00020008179)	ACVR1B (ENSACCG00020008193)	ENSACCG00020008217	ANKRD33 (ENSACCG00020008239)	FIGNL2 (ENSACCG00020008253)	SCN8A (ENSACCG00020008274)	ENSACCG00020008299 #17	ENSACCG00020008310 #17	ENSACCG00020008323	ATF1 (ENSACCG00020008338) #18	DIP2B (ENSACCG00020008383) #19	LARP4 (ENSACCG00020008467) #20	LIMA1 (ENSACCG00020008527) #22	CERS5 (ENSACCG00020008557) #23	COX14 (ENSACCG00020008574) #24	GPD1 (ENSACCG00020008582) #25	SMARCD1 (ENSACCG00020008601) #26	ASIC1 (ENSACCG00020008616) #27	RACGAP1 (ENSACCG00020008650) #28	ENSACCG00020008673	HDAC7 (ENSACCG00020008715)	ENSACCG00020008747	SLC48A1 (ENSACCG00020008764)	RAPGEF3 (ENSACCG00020008791)	ENDOU (ENSACCG00020008828)	NEUROD4 (ENSACCG00020008843)	ENSACCG00020008874	PPP1R1A (ENSACCG00020008898)
Passeriformes	ANCESTRAL SPECIES	32	ENSGT00940000159962 #37	ENSGT00390000016511.i.a	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000161446	ENSGT00500000044852.b	ENSGT01070000255642	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT01090000260194	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b
Passeriformes_d	ANCESTRAL SPECIES	33	ENSGT00940000159962 #37	ENSGT00390000016511.i.a	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000161446	ENSGT00500000044852.b	ENSGT01070000255642	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT01090000260194	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00940000162831	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712
Passeriformes_g	ANCESTRAL SPECIES	32	ENSGT00940000159962 #37	ENSGT00390000016511.i.b	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000161446	ENSGT00500000044852.b	ENSGT01070000255642	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT01090000260194	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00940000162831	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712.h
Medium ground finch	MODERN SPECIES	297										SCN8A (ENSGFOG00000005310)	METTL7A (ENSGFOG00000005832) #17	ENSGFOG00000005837	ATF1 (ENSGFOG00000005845) #18	DIP2B (ENSGFOG00000005859) #19	LARP4 (ENSGFOG00000005885) #20	LIMA1 (ENSGFOG00000005899) #22	CERS5 (ENSGFOG00000005922) #23	ENSGFOG00000005929	GPD1 (ENSGFOG00000005934) #25	SMARCD1 (ENSGFOG00000005941) #26	ASIC1 (ENSGFOG00000005961) #27	ENSGFOG00000005973	RACGAP1 (ENSGFOG00000005992) #28	ENSGFOG00000006030	HDAC7 (ENSGFOG00000006049)	ENSGFOG00000006241	SLC48A1 (ENSGFOG00000006245)	ENSGFOG00000006249	ENDOU (ENSGFOG00000006260)	PDE1B (ENSGFOG00000006300)
Passeroidea	ANCESTRAL SPECIES	35	ENSGT00940000159962 #37	ENSGT00390000016511.i.b	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT01070000255642	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT01090000260194	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00940000160307.q.b	ENSGT00940000162831	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	22	ENSTGUG00000025143	SARNP (ENSTGUG00000026175)	ENSTGUG00000016156	ENSTGUG00000027018	ENSTGUG00000011570	ENSTGUG00000029428	ENSTGUG00000021250	ENSTGUG00000027483	ENSTGUG00000003307	ENSTGUG00000022001	ENSTGUG00000024594 #17	ENSTGUG00000025020	ENSTGUG00000022305 #19	ENSTGUG00000019082	ENSTGUG00000025052 #20	ENSTGUG00000025968 #22	ENSTGUG00000026704	ENSTGUG00000027694	ENSTGUG00000029291	ENSTGUG00000003546	ENSTGUG00000020432	ENSTGUG00000003284	COL1A1 (ENSTGUG00000024335)	ENSTGUG00000029458	ENSTGUG00000017093	ENSTGUG00000028340	ENSTGUG00000027678	ENSTGUG00000022073	ENSTGUG00000022474	ENSTGUG00000028344	ENSTGUG00000029660
Zebra finch	MODERN SPECIES	22	SARNP (ENSTGUG00000016126)	ENSTGUG00000026668	ENSTGUG00000027223	ENSTGUG00000027180	ENSTGUG00000024913	ENSTGUG00000026279	ENSTGUG00000025779	ENSTGUG00000028758	ENSTGUG00000018826	ENSTGUG00000029556	ENSTGUG00000003382 #17	ATF1 (ENSTGUG00000027804) #18	ENSTGUG00000003391	ENSTGUG00000003412 #19	ENSTGUG00000003479 #20	ENSTGUG00000021283 #22	ENSTGUG00000019886	ENSTGUG00000021259	ENSTGUG00000029058	ENSTGUG00000024525	ENSTGUG00000029376	ENSTGUG00000028804	ENSTGUG00000027589	ENSTGUG00000029269	ENSTGUG00000025076	ENSTGUG00000023338	ENSTGUG00000028639	ENSTGUG00000020153	ENSTGUG00000021232	ENSTGUG00000016232	ENSTGUG00000023166
Common canary	MODERN SPECIES	79			DCTN2 (ENSSCAG00000001465)	MARS1 (ENSSCAG00000001514)	CSRNP2 (ENSSCAG00000001532) #13	TFCP2 (ENSSCAG00000001540) #12	ENSSCAG00000001559	ENSSCAG00000001565	FIGNL2 (ENSSCAG00000001571)	SCN8A (ENSSCAG00000002740)	METTL7A (ENSSCAG00000007669) #17	ENSSCAG00000007677	ATF1 (ENSSCAG00000007702) #18	DIP2B (ENSSCAG00000007797) #19	LARP4 (ENSSCAG00000008251) #20	LIMA1 (ENSSCAG00000008268) #22	CERS5 (ENSSCAG00000008296) #23	ENSSCAG00000008313	GPD1 (ENSSCAG00000008318) #25	SMARCD1 (ENSSCAG00000008328) #26	ASIC1 (ENSSCAG00000008342) #27	RACGAP1 (ENSSCAG00000008348) #28	ENSSCAG00000008356	ENSSCAG00000008363	ENSSCAG00000008371	ENSSCAG00000008376	ENSSCAG00000008385	ENSSCAG00000008396	CSAD (ENSSCAG00000008398)	ENSSCAG00000008407	RARG (ENSSCAG00000008415)
Flycatcher	MODERN SPECIES	278										ENSFALG00000026008	METTL7A (ENSFALG00000024707) #17	ENSFALG00000002099	ATF1 (ENSFALG00000002102) #18	DIP2B (ENSFALG00000002109) #19	LARP4 (ENSFALG00000002114) #20	LIMA1 (ENSFALG00000002118) #22	CERS5 (ENSFALG00000002123) #23	ENSFALG00000014955	GPD1 (ENSFALG00000002136) #25	SMARCD1 (ENSFALG00000002141) #26	ASIC1 (ENSFALG00000002144) #27	RACGAP1 (ENSFALG00000002153) #28	ASB8 (ENSFALG00000023684)	ENSFALG00000002167	ENSFALG00000023111	ENSFALG00000024525
Great tit	DUPLICATION
Great tit	MODERN SPECIES	640	BCDIN3D (ENSPMJG00000016005) #33	FAIM2 (ENSPMJG00000016004) #32	AQP2 (ENSPMJG00000016003) #31	AQP5 (ENSPMJG00000016002) #30	ENSPMJG00000016001	SLC4A8 (ENSPMJG00000014774)	GALNT6 (ENSPMJG00000014771)	ENSPMJG00000014770 #7	SCN8A (ENSPMJG00000014704)	METTL7A (ENSPMJG00000014702) #17	ENSPMJG00000014701	ATF1 (ENSPMJG00000014700) #18	DIP2B (ENSPMJG00000013259) #19	LARP4 (ENSPMJG00000013255) #20	ENSPMJG00000013254 #22	ENSPMJG00000013253 #22	CERS5 (ENSPMJG00000013252) #23	ENSPMJG00000013251	GPD1 (ENSPMJG00000013076) #25	SMARCD1 (ENSPMJG00000012966) #26	ASIC1 (ENSPMJG00000012925) #27	ENSPMJG00000012924	RACGAP1 (ENSPMJG00000012923) #28
Great tit	MODERN SPECIES	640	KRT80 (ENSPMJG00000016007)	BCDIN3D (ENSPMJG00000016005) #33	FAIM2 (ENSPMJG00000016004) #32	AQP2 (ENSPMJG00000016003) #31	AQP5 (ENSPMJG00000016002) #30	ENSPMJG00000016001	SLC4A8 (ENSPMJG00000014774)	GALNT6 (ENSPMJG00000014771)	ENSPMJG00000014770 #7	SCN8A (ENSPMJG00000014704)	METTL7A (ENSPMJG00000014702) #17	ENSPMJG00000014701	ATF1 (ENSPMJG00000014700) #18	DIP2B (ENSPMJG00000013259) #19	LARP4 (ENSPMJG00000013255) #20	ENSPMJG00000013254 #22	ENSPMJG00000013253 #22	CERS5 (ENSPMJG00000013252) #23	ENSPMJG00000013251	GPD1 (ENSPMJG00000013076) #25	SMARCD1 (ENSPMJG00000012966) #26	ASIC1 (ENSPMJG00000012925) #27	ENSPMJG00000012924	RACGAP1 (ENSPMJG00000012923) #28
Galloanserae	ANCESTRAL SPECIES	37	ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b
Phasianidae	ANCESTRAL SPECIES	25	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT01000000221715	ENSGT00940000160712
Phasianidae_b	ANCESTRAL SPECIES	37	ENSGT00940000155808	ENSGT01050000244940.a.a #35	ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b
Chicken	MODERN SPECIES	27	ENSGALG00010025449 #37	ATG101 (ENSGALG00010025496)	NR4A1 (ENSGALG00010025421)	TAMALIN (ENSGALG00010025405)	ACVR1B (ENSGALG00010022190)	ENSGALG00010022215	FIGNL2 (ENSGALG00010022248)	SCN8A (ENSGALG00010022264)	ENSGALG00010022277	ENSGALG00010025735	METTL7A (ENSGALG00010022282) #17	ENSGALG00010022287	ATF1 (ENSGALG00010022397) #18	DIP2B (ENSGALG00010022415) #19	LARP4 (ENSGALG00010022431) #20	LIMA1 (ENSGALG00010023110) #22	CERS5 (ENSGALG00010023127) #23	COX14 (ENSGALG00010025745) #24	GPD1 (ENSGALG00010023167) #25	SMARCD1 (ENSGALG00010023184) #26	ASIC1 (ENSGALG00010023231) #27	RACGAP1 (ENSGALG00010023264) #28	HDAC7 (ENSGALG00010023273)	TWIST3 (ENSGALG00010023275)	SLC48A1 (ENSGALG00010023285)	RAPGEF3 (ENSGALG00010023317)	ENDOU (ENSGALG00010023333)	NEUROD4 (ENSGALG00010023386)	ENSGALG00010025416	PPP1R1A (ENSGALG00010025650)	PDE1B (ENSGALG00010025658)
Turkey	MODERN SPECIES	8	ENSMGAG00000022883	ENSMGAG00000019123	ENSMGAG00000008666	ENSMGAG00000005511	ENSMGAG00000005560	ENSMGAG00000005402	ENSMGAG00000005352	ENSMGAG00000022175	ENSMGAG00000005282	ENSMGAG00000016054	ENSMGAG00000010667	ENSMGAG00000010659	ATF1 (ENSMGAG00000010646) #18	DIP2B (ENSMGAG00000010609) #19	LARP4 (ENSMGAG00000010598) #20	LIMA1 (ENSMGAG00000010583) #22	CERS5 (ENSMGAG00000022719) #23	GPD1 (ENSMGAG00000017534) #25	SMARCD1 (ENSMGAG00000010566) #26	ASIC1 (ENSMGAG00000010535) #27	ENSMGAG00000010511 #28	ENSMGAG00000010494	ENSMGAG00000010087	ENSMGAG00000010075	ENSMGAG00000022682	ENSMGAG00000010084	ENSMGAG00000010026	ENSMGAG00000010021	ENSMGAG00000010007	ENSMGAG00000009977	ENSMGAG00000009993
Japanese quail	MODERN SPECIES	497		ENSCJPG00005017858 #37	ENSCJPG00005017859	NR4A1 (ENSCJPG00005017860)	ACVR1B (ENSCJPG00005017869)	ENSCJPG00005017870	ENSCJPG00005017871	ANKRD33 (ENSCJPG00005017872)	FIGNL2 (ENSCJPG00005017873)	SCN8A (ENSCJPG00005017876)	METTL7A (ENSCJPG00005019743) #17	ENSCJPG00005019744	ATF1 (ENSCJPG00005019745) #18	DIP2B (ENSCJPG00005019747) #19	LARP4 (ENSCJPG00005019749) #20	LIMA1 (ENSCJPG00005019779) #22	CERS5 (ENSCJPG00005019780) #23	COX14 (ENSCJPG00005019782) #24	GPD1 (ENSCJPG00005019785) #25	SMARCD1 (ENSCJPG00005019824) #26	ASIC1 (ENSCJPG00005019958) #27	RACGAP1 (ENSCJPG00005019959) #28	HDAC7 (ENSCJPG00005019960)	ENSCJPG00005019961	SLC48A1 (ENSCJPG00005019962)	RAPGEF3 (ENSCJPG00005019963)	ENDOU (ENSCJPG00005020081)	NEUROD4 (ENSCJPG00005020082)	ENSCJPG00005020085	ENSCJPG00005020086	PDE1B (ENSCJPG00005020088)
Anatidae	ANCESTRAL SPECIES	86		ENSGT00940000159962 #37	ENSGT00390000016511	ENSGT00950000183038.a.b.a	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000154786.c #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000159065	ENSGT00940000162831	ENSGT00390000002307	ENSGT00940000159931	ENSGT00530000063825.B	ENSGT00940000160217
Duck	MODERN SPECIES	30	AQP5 (ENSAPLG00000015507) #30	ENSAPLG00000019104	SLC4A8 (ENSAPLG00000013942)	GALNT6 (ENSAPLG00000013611)	CELA1 (ENSAPLG00000013234) #7	BIN2 (ENSAPLG00000028612)	DAZAP2 (ENSAPLG00000024725) #10	FIGNL2 (ENSAPLG00000030252)	SCN8A (ENSAPLG00000010964)	ENSAPLG00000012504 #17	ENSAPLG00000017116 #17	ENSAPLG00000012509	ATF1 (ENSAPLG00000012521) #18	DIP2B (ENSAPLG00000012628) #19	LARP4 (ENSAPLG00000013661) #20	LIMA1 (ENSAPLG00000006766) #22	CERS5 (ENSAPLG00000006809) #23	SMARCD1 (ENSAPLG00000006874) #26	ASIC1 (ENSAPLG00000006928) #27	RACGAP1 (ENSAPLG00000006988) #28	HDAC7 (ENSAPLG00000007048)	ENSAPLG00000025246	SLC48A1 (ENSAPLG00000031044)	RAPGEF3 (ENSAPLG00000007186)
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	304			FMNL3 (ENSABRG00000016925) #37	ATG101 (ENSABRG00000016938)	NR4A1 (ENSABRG00000016943)	ACVR1B (ENSABRG00000016951)	ENSABRG00000016958	ANKRD33 (ENSABRG00000016969)	FIGNL2 (ENSABRG00000016973)	SCN8A (ENSABRG00000017292)	ENSABRG00000020426	ENSABRG00000020449	ATF1 (ENSABRG00000020453) #18	DIP2B (ENSABRG00000020580) #19	LARP4 (ENSABRG00000021206) #20	ENSABRG00000021217 #22	ENSABRG00000021232 #22	CERS5 (ENSABRG00000021238) #23	GPD1 (ENSABRG00000021255) #25	SMARCD1 (ENSABRG00000021298) #26	ASIC1 (ENSABRG00000021374) #27	RACGAP1 (ENSABRG00000021379) #28	HDAC7 (ENSABRG00000021420)	ENSABRG00000021431	SLC48A1 (ENSABRG00000021437)	RAPGEF3 (ENSABRG00000021445)	ENDOU (ENSABRG00000021460)	NEUROD4 (ENSABRG00000021464)
Pink-footed goose	MODERN SPECIES	304		FMNL3 (ENSABRG00000016925) #37	ATG101 (ENSABRG00000016938)	NR4A1 (ENSABRG00000016943)	ACVR1B (ENSABRG00000016951)	ENSABRG00000016958	ANKRD33 (ENSABRG00000016969)	FIGNL2 (ENSABRG00000016973)	SCN8A (ENSABRG00000017292)	ENSABRG00000020426	ENSABRG00000020449	ATF1 (ENSABRG00000020453) #18	DIP2B (ENSABRG00000020580) #19	LARP4 (ENSABRG00000021206) #20	ENSABRG00000021217 #22	ENSABRG00000021232 #22	CERS5 (ENSABRG00000021238) #23	GPD1 (ENSABRG00000021255) #25	SMARCD1 (ENSABRG00000021298) #26	ASIC1 (ENSABRG00000021374) #27	RACGAP1 (ENSABRG00000021379) #28	HDAC7 (ENSABRG00000021420)	ENSABRG00000021431	SLC48A1 (ENSABRG00000021437)	RAPGEF3 (ENSABRG00000021445)	ENDOU (ENSABRG00000021460)	NEUROD4 (ENSABRG00000021464)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	603					ACVR1B (ENSSCUG00000009169)	ENSSCUG00000009174	ENSSCUG00000009176	SCN8A (ENSSCUG00000009202)	ENSSCUG00000009238 #17	ENSSCUG00000009239 #17	ENSSCUG00000009241	ATF1 (ENSSCUG00000009244) #18	DIP2B (ENSSCUG00000009249) #19	LARP4 (ENSSCUG00000009254) #20	ENSSCUG00000009258 #22	ENSSCUG00000009257 #22	CERS5 (ENSSCUG00000009259) #23	GPD1 (ENSSCUG00000009260) #25	SMARCD1 (ENSSCUG00000009263) #26	ASIC1 (ENSSCUG00000009271) #27
African ostrich	MODERN SPECIES	603						ACVR1B (ENSSCUG00000009169)	ENSSCUG00000009174	ENSSCUG00000009176	SCN8A (ENSSCUG00000009202)	ENSSCUG00000009238 #17	ENSSCUG00000009239 #17	ENSSCUG00000009241	ATF1 (ENSSCUG00000009244) #18	DIP2B (ENSSCUG00000009249) #19	LARP4 (ENSSCUG00000009254) #20	ENSSCUG00000009258 #22	ENSSCUG00000009257 #22	CERS5 (ENSSCUG00000009259) #23	GPD1 (ENSSCUG00000009260) #25	SMARCD1 (ENSSCUG00000009263) #26	ASIC1 (ENSSCUG00000009271) #27
Lepidosauria	ANCESTRAL SPECIES	66	ENSGT00950000183038.a.b.a	ENSGT00530000063734.b	ENSGT00940000157032	ENSGT00940000164733	ENSGT00500000044852.b	ENSGT00940000161971	ENSGT00940000156263	ENSGT00960000186993	ENSGT00940000154786.c.b #17	ENSGT00940000154786.d #17	ENSGT00940000165418	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00390000008169	ENSGT00940000160612.c.a ##31	ENSGT00940000161557.a.a.a ##30	ENSGT00940000161949 #29
tuatara	MODERN SPECIES	1096	PRPF40B (ENSSPUG00000016351)	ENSSPUG00000016373	NR4A1 (ENSSPUG00000016379)	TAMALIN (ENSSPUG00000016387)	ACVR1B (ENSSPUG00000016402)	ENSSPUG00000016412	SCN8A (ENSSPUG00000016429)	ENSSPUG00000016475	ENSSPUG00000016476 #17	ENSSPUG00000016480 #17	ENSSPUG00000016483 #17	ENSSPUG00000016488	ATF1 (ENSSPUG00000016492) #18	DIP2B (ENSSPUG00000016515) #19	LARP4 (ENSSPUG00000016552) #20	LIMA1 (ENSSPUG00000016565) #22	CERS5 (ENSSPUG00000016583) #23	ENSSPUG00000016593	GPD1 (ENSSPUG00000016598) #25	SMARCD1 (ENSSPUG00000016616) #26	ENSSPUG00000016647 #27	ENSSPUG00000016654 #27	RACGAP1 (ENSSPUG00000016669) #28	ENSSPUG00000016720	ENSSPUG00000016735 ##30	AQP6 (ENSSPUG00000016757) #29	TRPC4 (ENSSPUG00000016771)	POSTN (ENSSPUG00000016779)	SUPT20H (ENSSPUG00000016802)	EXOSC8 (ENSSPUG00000016825)	ALG5 (ENSSPUG00000016834)
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000156555	ENSGT00390000002226	ENSGT00390000007512	ENSGT00940000160240	ENSGT00940000165325.b	ENSGT00940000155223.b	ENSGT00940000156263	ENSGT00940000154786.c.a #17	ENSGT00940000165418.c.b.b	ENSGT00940000165418.c.a.a.a	ENSGT00940000165418.c.a.a.b	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00390000008169	ENSGT00940000161557.a.a.a ##30	ENSGT00940000161949 #29	ENSGT00940000161971	ENSGT00500000044852.b	ENSGT00940000164733	ENSGT00940000157032	ENSGT00530000063734.b
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000165325.b	ENSGT00940000155223.b	ENSGT00940000156263	ENSGT00940000154786.c.a #17	ENSGT00940000154786.c.b #17	ENSGT00940000154786.d #17	ENSGT00940000165418.c.b.a.a	ENSGT00940000165418.c.b.b	ENSGT00940000165418.c.a.a.a.b	ENSGT00940000165418.c.a.a.b	ENSGT00940000165418.c.a.b	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00390000008169	ENSGT00940000160612.c.a ##31	ENSGT00940000161557.a.a.a ##30	ENSGT00940000161949 #29	ENSGT00940000161971	ENSGT00500000044852.b.g	ENSGT00940000164733	ENSGT00940000157032
Argentine black and white tegu	MODERN SPECIES	18	ENSSMRG00000012479 #17	ENSSMRG00000012477 #17	ENSSMRG00000012476 #17	ENSSMRG00000012473	ENSSMRG00000012469	ENSSMRG00000012468	ENSSMRG00000012467	ENSSMRG00000012466	ENSSMRG00000012440	ENSSMRG00000012438	ENSSMRG00000012437	ATF1 (ENSSMRG00000012436) #18	DIP2B (ENSSMRG00000012434) #19	LARP4 (ENSSMRG00000012433) #20	ENSSMRG00000012432	LIMA1 (ENSSMRG00000012429) #22	ENSSMRG00000012427	ENSSMRG00000012426 #23	COX14 (ENSSMRG00000012421) #24	GPD1 (ENSSMRG00000012419) #25	SMARCD1 (ENSSMRG00000012410) #26	ASIC1 (ENSSMRG00000012406) #27	RACGAP1 (ENSSMRG00000012389) #28	ENSSMRG00000012360	ENSSMRG00000012316 ##30	AQP6 (ENSSMRG00000012303) #29	FIGNL2 (ENSSMRG00000012302)	ANKRD33 (ENSSMRG00000012245)	ENSSMRG00000012243	ACVR1B (ENSSMRG00000012240)	TAMALIN (ENSSMRG00000012217)
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000005863 #17	ENSPMRG00000005855 #17	ENSPMRG00000005851 #17	ENSPMRG00000005849 #17	ENSPMRG00000005836	ENSPMRG00000005825	ENSPMRG00000005800	ENSPMRG00000005787	ENSPMRG00000005777	ATF1 (ENSPMRG00000005761) #18	DIP2B (ENSPMRG00000003728) #19	ENSPMRG00000003478	LARP4 (ENSPMRG00000003440) #20	ENSPMRG00000003433	ENSPMRG00000003426	LIMA1 (ENSPMRG00000003420) #22	CERS5 (ENSPMRG00000003412) #23	COX14 (ENSPMRG00000003408) #24	GPD1 (ENSPMRG00000003400) #25	SMARCD1 (ENSPMRG00000003238) #26	ENSPMRG00000003181	ASIC1 (ENSPMRG00000003169) #27	RACGAP1 (ENSPMRG00000003154) #28	ENSPMRG00000003139	ENSPMRG00000003132 ##31	ENSPMRG00000003125 ##30	AQP6 (ENSPMRG00000003102) #29	ENSPMRG00000003090	FIGNL2 (ENSPMRG00000003086)	ENSPMRG00000003083	ENSPMRG00000003074
Toxicofera	ANCESTRAL SPECIES	19				ENSGT00940000154786.c.b #17	ENSGT00940000165418.c.b.a.b.a	ENSGT00940000165418.c.b.b	ENSGT00940000165418.d	ENSGT00940000165418.c.a.a.a	ENSGT00940000165418.c.a.a.b	ENSGT00940000165418.c.b.a.a	ENSGT00940000165418.c.a.b	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000002190 #24	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00390000008169	ENSGT00940000161557.a.a.a ##30	ENSGT00940000161949 #29	ENSGT00940000161971	ENSGT00500000044852.b	ENSGT00940000164733	ENSGT00940000157032	ENSGT00530000063734.b
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1	ENSACAG00000017243	ENSACAG00000017241 #17	ENSACAG00000017238 #17	ENSACAG00000042903	ENSACAG00000017231	ENSACAG00000041333	ENSACAG00000039730	ENSACAG00000039731	ENSACAG00000034772	ENSACAG00000035160	ENSACAG00000017225	ATF1 (ENSACAG00000017202) #18	DIP2B (ENSACAG00000017156) #19	LARP4 (ENSACAG00000017133) #20	ENSACAG00000024685	ENSACAG00000040429 #22	CERS5 (ENSACAG00000017080) #23	COX14 (ENSACAG00000017079) #24	GPD1 (ENSACAG00000017063) #25	SMARCD1 (ENSACAG00000017038) #26	ENSACAG00000016987 #27	ASIC1 (ENSACAG00000040257) #27	ENSACAG00000016971 #28	ENSACAG00000029419	ENSACAG00000016956 ##30	AQP6 (ENSACAG00000045453) #29	FIGNL2 (ENSACAG00000016922)	ANKRD33 (ENSACAG00000016915)	ENSACAG00000016876	ACVR1B (ENSACAG00000016836)	TAMALIN (ENSACAG00000016817)
Lizard	MODERN SPECIES	828	FIGN (ENSACAG00000000706)	GRB14 (ENSACAG00000000714)	ENSACAG00000000923	ENSACAG00000044062	SLC38A11 (ENSACAG00000000966)	ENSACAG00000038020	SCN3A (ENSACAG00000001038)	ENSACAG00000002063	TTC21B (ENSACAG00000002696)	ENSACAG00000037391	ENSACAG00000002844	ENSACAG00000041077	ENSACAG00000043878	ENSACAG00000000353	XIRP2 (ENSACAG00000000350)	ENSACAG00000036390 #22
Elapidae	ANCESTRAL SPECIES	2	ENSGT00960000186993	ENSGT00940000154786.c.a.a.a #17	ENSGT00940000165418.c.b.b	ENSGT00940000165418.d	ENSGT00940000165418.c.a.a.a	ENSGT00940000165418.c.a.a.b	ENSGT00940000165418.c.b.a.a	ENSGT00940000165418.c.a.b	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT01090000260228.c.a	ENSGT00940000157130.jb	ENSGT00530000063779.A	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00960000192431	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161971	ENSGT00500000044852.b	ENSGT00940000164733	ENSGT00940000157032	ENSGT00530000063734.b	ENSGT00950000183038.a.b.a	ENSGT00390000016511
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	1	SCN8A (ENSNNAG00000004074)	ENSNNAG00000004378 #17	ENSNNAG00000004392 #17	ENSNNAG00000004460 #17	ENSNNAG00000004493 #17	ENSNNAG00000004523 #17	ENSNNAG00000004547	ENSNNAG00000004606	ENSNNAG00000004657	ENSNNAG00000004679	ENSNNAG00000004698	ATF1 (ENSNNAG00000004740) #18	DIP2B (ENSNNAG00000004783) #19	LARP4 (ENSNNAG00000005084) #20	ENSNNAG00000005303	ENSNNAG00000005343 #22	ENSNNAG00000005359 #22	CERS5 (ENSNNAG00000005370) #23	ENSNNAG00000005383	GPD1 (ENSNNAG00000005393) #25	SMARCD1 (ENSNNAG00000005438) #26	ENSNNAG00000005550 #27	ASIC1 (ENSNNAG00000005574) #27	RACGAP1 (ENSNNAG00000005611) #28	AQP6 (ENSNNAG00000000392) #29	FIGNL2 (ENSNNAG00000000433)	ENSNNAG00000000448	ENSNNAG00000000462	ACVR1B (ENSNNAG00000000477)	TAMALIN (ENSNNAG00000000493)	NR4A1 (ENSNNAG00000000506)
Indian cobra	MODERN SPECIES	1	ENSNNAG00000004378 #17	ENSNNAG00000004392 #17	ENSNNAG00000004460 #17	ENSNNAG00000004493 #17	ENSNNAG00000004523 #17	ENSNNAG00000004547	ENSNNAG00000004606	ENSNNAG00000004657	ENSNNAG00000004679	ENSNNAG00000004698	ATF1 (ENSNNAG00000004740) #18	DIP2B (ENSNNAG00000004783) #19	LARP4 (ENSNNAG00000005084) #20	ENSNNAG00000005303	ENSNNAG00000005343 #22	ENSNNAG00000005359 #22	CERS5 (ENSNNAG00000005370) #23	ENSNNAG00000005383	GPD1 (ENSNNAG00000005393) #25	SMARCD1 (ENSNNAG00000005438) #26	ENSNNAG00000005550 #27	ASIC1 (ENSNNAG00000005574) #27	RACGAP1 (ENSNNAG00000005611) #28	AQP6 (ENSNNAG00000000392) #29	FIGNL2 (ENSNNAG00000000433)	ENSNNAG00000000448	ENSNNAG00000000462	ACVR1B (ENSNNAG00000000477)	TAMALIN (ENSNNAG00000000493)	NR4A1 (ENSNNAG00000000506)	ATG101 (ENSNNAG00000000527)
Elapidae_a	ANCESTRAL SPECIES	68							ENSGT00940000165418.c.b.b	ENSGT00940000165418.d	ENSGT00940000165418.c.a.a.b	ENSGT00940000165418.c.b.a.a	ENSGT00940000165418.c.a.b	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00960000192431	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000164727	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161971	ENSGT00500000044852.b	ENSGT00940000164733	ENSGT00940000157032	ENSGT00530000063734.b	ENSGT00950000183038.a.b.a	ENSGT00390000016511
Acanthophiinae	ANCESTRAL SPECIES	64							ENSGT00940000165418.c.b.b	ENSGT00940000165418.d	ENSGT00940000165418.c.a.a.b	ENSGT00940000165418.c.b.a.a	ENSGT00940000165418.c.a.b	ENSGT00940000158200 #18	ENSGT00950000182997.a.b.b.b #19	ENSGT00940000154409 #20	ENSGT00990000205047	ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00960000192431	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00940000161949 #29	ENSGT00940000161971	ENSGT00500000044852.b	ENSGT00940000164733	ENSGT00940000157032	ENSGT00530000063734.b	ENSGT00950000183038.a.b.a	ENSGT00390000016511	ENSGT00550000074800
Eastern brown snake	MODERN SPECIES	94								ENSPTXG00000018129	ENSPTXG00000018130	ENSPTXG00000018132	ENSPTXG00000018134	ATF1 (ENSPTXG00000018136) #18	DIP2B (ENSPTXG00000018138) #19	LARP4 (ENSPTXG00000018140) #20	ENSPTXG00000018143	LIMA1 (ENSPTXG00000018144) #22	ENSPTXG00000018145	ENSPTXG00000018146	GPD1 (ENSPTXG00000018147) #25	SMARCD1 (ENSPTXG00000018148) #26	ENSPTXG00000018150 #27	ASIC1 (ENSPTXG00000018151) #27	RACGAP1 (ENSPTXG00000007145) #28	AQP6 (ENSPTXG00000007165) #29	ENSPTXG00000007185	ENSPTXG00000007187	ENSPTXG00000007188	ACVR1B (ENSPTXG00000007190)	TAMALIN (ENSPTXG00000007192)	NR4A1 (ENSPTXG00000007194)	ATG101 (ENSPTXG00000007197)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	123								ENSNSUG00000001185	ENSNSUG00000001186	ENSNSUG00000001194	ATF1 (ENSNSUG00000001198) #18	DIP2B (ENSNSUG00000001205) #19	ENSNSUG00000001324 #20	ENSNSUG00000001328 #20	ENSNSUG00000001330	LIMA1 (ENSNSUG00000001337) #22	CERS5 (ENSNSUG00000001379) #23	ENSNSUG00000001387	GPD1 (ENSNSUG00000001389) #25	SMARCD1 (ENSNSUG00000001398) #26	ENSNSUG00000001428 #27	ENSNSUG00000001429	ASIC1 (ENSNSUG00000001430) #27	RACGAP1 (ENSNSUG00000001434) #28	AQP6 (ENSNSUG00000001437) #29	FIGNL2 (ENSNSUG00000001454)	ENSNSUG00000001455	ENSNSUG00000001457	ACVR1B (ENSNSUG00000001464)	TAMALIN (ENSNSUG00000001532)	NR4A1 (ENSNSUG00000001534)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	63	ENSNSUG00000020555	ENSNSUG00000020554	ENSNSUG00000020553	ENSNSUG00000020552	ENSNSUG00000020550	ENSNSUG00000020549	ENSNSUG00000020548	ENSNSUG00000020547	ENSNSUG00000020546 ##13	ENSNSUG00000020545	ENSNSUG00000020544	ENSNSUG00000020543	ENSNSUG00000020542	ENSNSUG00000020541	ENSNSUG00000020539	ENSNSUG00000020538 #22
Mainland tiger snake	MODERN SPECIES	62	ENSNSUG00000020487	ENSNSUG00000020486	ENSNSUG00000020485	ENSNSUG00000020483	ENSNSUG00000020482	ENSNSUG00000020481	ENSNSUG00000020480	ENSNSUG00000020479 ##13	ENSNSUG00000020478	ENSNSUG00000020477	ENSNSUG00000020476	ENSNSUG00000020470	ENSNSUG00000020469	ENSNSUG00000020468	ENSNSUG00000020467	ENSNSUG00000020466 #22
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	10340																ENSLLTG00000011818 #22
Blue-lipped sea krait	MODERN SPECIES	5202																ENSLLTG00000013423 #22
Anura	ANCESTRAL SPECIES	3																ENSGT00940000158313 #22	ENSGT01030000234515.a.a.a #23	ENSGT00390000003114.e.a #25	ENSGT00940000156629 #26	ENSGT00940000158414 #27	ENSGT00940000154610.e.b #28	ENSGT00390000008169	ENSGT00940000160612.c.a.b ##31	ENSGT00940000160612.c.b ##31	ENSGT00940000161557.a.a ##30	ENSGT00940000160612.c.a.a.a ##31	ENSGT00940000160612.d #31	ENSGT01050000244890.a.b.b #32	ENSGT00940000153993.B #33	ENSGT00940000161279	ENSGT00940000162738.b
Frog	MODERN SPECIES	2	kcnrg (ENSXETG00000034495)	trim13 (ENSXETG00000015691)	spryd7 (ENSXETG00000015683)	pamr1 (ENSXETG00000015677)	ebpl (ENSXETG00000015682)	arl11 (ENSXETG00000015673)	rcbtb1 (ENSXETG00000015675)	ENSXETG00000047192	ENSXETG00000032387	setdb2 (ENSXETG00000015666)	cab39l (ENSXETG00000015659)	cdadc1 (ENSXETG00000013314)	ENSXETG00000013318	ENSXETG00000047778	fndc3a (ENSXETG00000013335)	lima1 (ENSXETG00000013342) #22	cers5 (ENSXETG00000013344) #23	gpd1 (ENSXETG00000013352) #25	smarcd1 (ENSXETG00000013366) #26	racgap1 (ENSXETG00000013383) #28	XB5780651 [provisional] (ENSXETG00000013385)	ENSXETG00000013389 ##31	aqp2 (ENSXETG00000020388) ##31	aqp5 (ENSXETG00000024580) ##30	ENSXETG00000024581 ##31	faim2 (ENSXETG00000020393) #32	bcdin3d (ENSXETG00000040078) #33	krt80 (ENSXETG00000018025)	krt7 (ENSXETG00000020417)	krt59 (ENSXETG00000020412)	krt6b (ENSXETG00000048037)
Leishan spiny toad	MODERN SPECIES	5	FAM124A (ENSLLEG00000002844)	SERPINE3 (ENSLLEG00000002816)	INTS6 (ENSLLEG00000002682)	WDFY2 (ENSLLEG00000002493)	ENSLLEG00000002440	ATP7B (ENSLLEG00000002348)	ALG11 (ENSLLEG00000002320)	NEK5 (ENSLLEG00000002207)	ENSLLEG00000002179	ENSLLEG00000002167	VPS36 (ENSLLEG00000002128)	THSD1 (ENSLLEG00000002086)	ENSLLEG00000002055	ENSLLEG00000002030	ENSLLEG00000002011	ENSLLEG00000001972 #22	CERS5 (ENSLLEG00000001920) #23	GPD1 (ENSLLEG00000001881) #25	SMARCD1 (ENSLLEG00000001840) #26	ENSLLEG00000001823	ASIC1 (ENSLLEG00000001712) #27	RACGAP1 (ENSLLEG00000001580) #28	ENSLLEG00000001537	ENSLLEG00000001514 ##31	ENSLLEG00000001498	ENSLLEG00000001486 ##31	ENSLLEG00000001478	ENSLLEG00000001455 ##31	AQP5 (ENSLLEG00000001439) ##30	ENSLLEG00000001415 ##31	AQP2 (ENSLLEG00000001397) #31
Coelacanth	MODERN SPECIES	734												ENSLACG00000014507	ENDOU (ENSLACG00000013450)	NEUROD4 (ENSLACG00000013009)	ENSLACG00000011531	LIMA1 (ENSLACG00000008490) #22	CERS5 (ENSLACG00000005671) #23	SMARCD1 (ENSLACG00000004072) #26	GPD1 (ENSLACG00000002433) #25
Actinopterygii	ANCESTRAL SPECIES	265				ENSGT01000000215164	ENSGT00390000006679.a	ENSGT01070000253775.a.d.b	ENSGT00940000166618	ENSGT00940000160422	ENSGT00940000154766.a.b	ENSGT00500000044852.b	ENSGT00940000157032	ENSGT00530000063734.b	ENSGT00950000183038.a.b.a	ENSGT00390000010523.d	ENSGT00540000073797	ENSGT00940000158313 #22	ENSGT00940000158675	ENSGT00940000160528
Reedfish	MODERN SPECIES	11	mfsd5 (ENSECRG00000008312)	ENSECRG00000008300	ENSECRG00000008277	ENSECRG00000008252	pfdn5 (ENSECRG00000008226)	ITGB7 (ENSECRG00000008194)	ENSECRG00000008154	dip2ba (ENSECRG00000008119) #19	atf1 (ENSECRG00000007774)	atf1 (ENSECRG00000007249)	GTSF1 (ENSECRG00000007189)	znf740b (ENSECRG00000006491)	ENSECRG00000006479	ENSECRG00000006457	zgc:174906 (ENSECRG00000006440)	lima1a (ENSECRG00000006422) #22	spryd3 (ENSECRG00000006354)	igfbp6b (ENSECRG00000006332)	ENSECRG00000006269	ENSECRG00000006156	ENSECRG00000006141	ENSECRG00000006125	ENSECRG00000005785	gpd1b (ENSECRG00000005730) #25	smarcd1 (ENSECRG00000005702) #26	ENSECRG00000005509	racgap1 (ENSECRG00000005411) #28	ENSECRG00000005395	bin2a (ENSECRG00000005386)	ENSECRG00000005376	dazap2 (ENSECRG00000005367) #10
Neopterygii	DUPLICATION
Neopterygii	DUPLICATION
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000158313.a.a #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000158313.a.a #22
Clupeocephala	ANCESTRAL SPECIES	39	ENSGT00940000160794	ENSGT00940000159522	ENSGT00940000155029.c.a.f	ENSGT00940000157315	ENSGT00940000158801	ENSGT00950000183123	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000161297	ENSGT00940000155330.c #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT01050000245365	ENSGT00940000178340	ENSGT00940000159517
Otomorpha	ANCESTRAL SPECIES	114			ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.j	ENSGT00390000004897	ENSGT00940000171486.A	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000161297	ENSGT00940000155330.c #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT01050000244940.a.a #35	ENSGT00390000002215.j	ENSGT00530000063607.a #34	ENSGT00940000154971.v
Otophysi	ANCESTRAL SPECIES	392												ENSGT00940000171486.A	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b.e #22	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t
Characiphysae	ANCESTRAL SPECIES	123	ENSGT00390000009168	ENSGT01030000234610.a.b	ENSGT00940000157179	ENSGT00390000011769	ENSGT00940000164385.b	ENSGT00940000162208.`c.a	ENSGT00940000155184	ENSGT00950000182919.A.p.h	ENSGT00390000007284	ENSGT00730000111138	ENSGT01060000248664	ENSGT01050000244841.A.b.a.b.a.a.j	ENSGT00940000171486.A	ENSGT00940000156787	ENSGT00940000157046.E	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00940000160839	ENSGT00950000183051.a.a.b	ENSGT00920000149172	ENSGT00940000156446
Characiphysae_b	ANCESTRAL SPECIES	107	ENSGT00390000009168	ENSGT01030000234610.a.b	ENSGT00940000157179	ENSGT00390000011769	ENSGT00940000164385.b	ENSGT00940000162208.`c.a	ENSGT00940000155184	ENSGT00950000182919.A.p.h	ENSGT00390000007284	ENSGT00730000111138	ENSGT01060000248664	ENSGT01050000244841.A.b.a.b.a.a.j	ENSGT00940000171486.A	ENSGT00940000156787	ENSGT00940000157046.E	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00940000160839	ENSGT00950000183051.a.a.b	ENSGT00920000149172	ENSGT00940000156446
Characoidei	ANCESTRAL SPECIES	441															ENSGT00940000157046.E	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t
Red-bellied piranha	MODERN SPECIES	24	FAIM2 (ENSPNAG00000000411) #32	nr1d4b (ENSPNAG00000000414)	rargb (ENSPNAG00000007705)	calcoco1b (ENSPNAG00000007712)	hoxc13b (ENSPNAG00000007715)	hoxc12b (ENSPNAG00000000419)	HOXC11 (ENSPNAG00000007721)	HOXC9 (ENSPNAG00000007725)	HOXC8 (ENSPNAG00000000427)	hoxc6b (ENSPNAG00000007733)	HOXC5 (ENSPNAG00000007735)	ENSPNAG00000007742	SMUG1 (ENSPNAG00000007746)	hnrnpa1a (ENSPNAG00000007752)	ENSPNAG00000007791	ENSPNAG00000000479 #22	igfbp6a (ENSPNAG00000000484)	PIP4K2C (ENSPNAG00000006506)	GPR182 (ENSPNAG00000000495)	SRC (ENSPNAG00000007840)	ube2v1 (ENSPNAG00000007848)	ENSPNAG00000000519	slc2a10 (ENSPNAG00000007863)	tp53rk (ENSPNAG00000007871)	ENSPNAG00000007874	SERINC3 (ENSPNAG00000000529)	ENSPNAG00000000532	ENSPNAG00000004750	FNDC11 (ENSPNAG00000000535)	NR4A1 (ENSPNAG00000000537)	DGKA (ENSPNAG00000007936)
Electric eel	MODERN SPECIES	56	arfgap1 (ENSEEEG00000015522)	ELMO2 (ENSEEEG00000015523)	ITGA7 (ENSEEEG00000015524)	rargb (ENSEEEG00000015528)	calcoco1b (ENSEEEG00000015545)	hoxc13b (ENSEEEG00000015546)	hoxc12b (ENSEEEG00000015547)	HOXC11 (ENSEEEG00000015548)	HOXC9 (ENSEEEG00000015551)	HOXC8 (ENSEEEG00000015553)	hoxc6b (ENSEEEG00000015554)	ENSEEEG00000015555	SMUG1 (ENSEEEG00000015557)	hnrnpa1a (ENSEEEG00000015563)	ENSEEEG00000015579	LIMA1 (ENSEEEG00000015580) #22	igfbp6a (ENSEEEG00000015581)	gpr182 (ENSEEEG00000015586)	SRC (ENSEEEG00000015588)	ube2v1 (ENSEEEG00000015591)	ENSEEEG00000015646	slc2a10 (ENSEEEG00000015764)	ENSEEEG00000015765
Channel catfish	MODERN SPECIES	13	ENSIPUG00000001757	ENSIPUG00000001842 #32	nr1d4b (ENSIPUG00000001852)	rarg (ENSIPUG00000001875)	calcoco1b (ENSIPUG00000001901)	hoxc13b (ENSIPUG00000001930)	hoxc12 (ENSIPUG00000001950)	hoxc11 (ENSIPUG00000001956)	HOXC9 (ENSIPUG00000001959)	hoxc6b (ENSIPUG00000001964)	HOXC5 (ENSIPUG00000001975)	ENSIPUG00000001981	SMUG1 (ENSIPUG00000002001)	hnrnpa1a (ENSIPUG00000002023)	ENSIPUG00000002205	ENSIPUG00000002363 #22	igfbp6a (ENSIPUG00000002369)	pip4k2c (ENSIPUG00000002376)	ENSIPUG00000002399	SRC (ENSIPUG00000002409)	ube2v1 (ENSIPUG00000002441)	ENSIPUG00000002473	slc2a10 (ENSIPUG00000002496)	tp53rk (ENSIPUG00000002500)	ENSIPUG00000002506	ENSIPUG00000002549	ENSIPUG00000002765	nr4a1 (ENSIPUG00000002771)	NABP2 (ENSIPUG00000002786)	ANKRD52 (ENSIPUG00000002812)	COQ10A (ENSIPUG00000002887)
Clupeiformes	ANCESTRAL SPECIES	2	ENSGT00940000156458.f	ENSGT00950000183025.b.b.e.a	ENSGT00940000161087.i.b	ENSGT00940000161087.i.a	ENSGT00940000161307	ENSGT00940000160009	ENSGT00940000160855	ENSGT00940000160866	ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.a	ENSGT00940000160794	ENSGT00390000004897	ENSGT00390000004405.a	ENSGT00940000157046.E	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000161297	ENSGT00940000155330.c #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT01050000244940.a.a #35	ENSGT00390000000980	ENSGT00390000002215.j	ENSGT00530000063607.a #34
Denticle herring	MODERN SPECIES	3	rargb (ENSDCDG00000015574)	calcoco1b (ENSDCDG00000015538)	hoxc13b (ENSDCDG00000034613)	hoxc12b (ENSDCDG00000034611)	hoxc11a (ENSDCDG00000034607)	ENSDCDG00000034606	hoxc9a (ENSDCDG00000034603)	HOXC8 (ENSDCDG00000034602)	hoxc6b (ENSDCDG00000034599)	hoxc5a (ENSDCDG00000034596)	HOXC4 (ENSDCDG00000034592)	SMUG1 (ENSDCDG00000034591)	hnrnpa1a (ENSDCDG00000034575)	copz1 (ENSDCDG00000034556)	ENSDCDG00000034545	LIMA1 (ENSDCDG00000034538) #22	igfbp6a (ENSDCDG00000034536)	PIP4K2C (ENSDCDG00000034518)	AGAP2 (ENSDCDG00000034427)	TSPAN31 (ENSDCDG00000034417)	cdk4 (ENSDCDG00000034415)	MARCHF9 (ENSDCDG00000034413)	mettl1 (ENSDCDG00000034412)	cyp27b1 (ENSDCDG00000034410)	EEF1AKMT3 (ENSDCDG00000034404)	slc11a2 (ENSDCDG00000033633) #15	ENSDCDG00000033584	ctdsp2 (ENSDCDG00000033582)	avil (ENSDCDG00000033259)	TMBIM6 (ENSDCDG00000033246) #35	NAA80 (ENSDCDG00000033245)
Euteleosteomorpha	ANCESTRAL SPECIES	43	ENSGT00940000155071.D	ENSGT00390000008983.a	ENSGT00940000157154.c	ENSGT00940000165984	ENSGT00940000156246.d	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183165.b.b.a.a
Acanthomorphata	ANCESTRAL SPECIES	6	ENSGT00940000156246.d	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00940000156458.f	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000157154.c	ENSGT00940000165984	ENSGT00940000156246.d	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000156246.d	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT01090000260051.b.a.a.a.b	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000158313.a.a #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000158313.a.a #22
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000176938	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT01090000260051.b.a.a.a.b	ENSGT00940000166355.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000176938	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT01090000260051.b.a.a.a.b	ENSGT00940000166355.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT00940000165559	ENSGT00940000164512.d	ENSGT01090000260051.b.a.a.a.b	ENSGT00940000166355.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Turbot	MODERN SPECIES	18	ENSSMAG00000003349	ENSSMAG00000003353	ENSSMAG00000003382	ENSSMAG00000003388	ENSSMAG00000003413	ENSSMAG00000003493	ENSSMAG00000003670	ENSSMAG00000003683	ENSSMAG00000003713 #32	nr1d4b (ENSSMAG00000003727)	rargb (ENSSMAG00000003735)	calcoco1b (ENSSMAG00000031294)	ENSSMAG00000003776	ENSSMAG00000003787	ENSSMAG00000003846	ENSSMAG00000003855 #22	ENSSMAG00000003865	igfbp6a (ENSSMAG00000037327)	ENSSMAG00000003897	AGAP2 (ENSSMAG00000003939)	CDK4 (ENSSMAG00000003969)	MARCHF9 (ENSSMAG00000003991)	ENSSMAG00000004006	ENSSMAG00000004023	ENSSMAG00000004056	ENSSMAG00000004077	ENSSMAG00000004091	ENSSMAG00000004102	ENSSMAG00000004113	ENSSMAG00000004197	ENSSMAG00000004209
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000165984	ENSGT00940000176938	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT01090000260051.b.a.a.a.b	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124.b	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Barramundi perch	MODERN SPECIES	493													SMUG1 (ENSLCAG00010021009)	ENSLCAG00010020970	ENSLCAG00010020952	ENSLCAG00010020948 #22	SPRYD3 (ENSLCAG00010020867)	ENSLCAG00010020850	PIP4K2C (ENSLCAG00010020844)	AGAP2 (ENSLCAG00010020829)	cdk4 (ENSLCAG00010020824)	MARCHF9 (ENSLCAG00010020821)	mettl1 (ENSLCAG00010020820)	cyp27b1 (ENSLCAG00010020817)	mcrs1 (ENSLCAG00010020749)	suox (ENSLCAG00010020728)	MMP19 (ENSLCAG00010020725)	ENSLCAG00010020721	ENSLCAG00010020717	timeless (ENSLCAG00010020669)	prph (ENSLCAG00010020653)
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000176938	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT01090000260051.b.a.a.a.b	ENSGT00940000159286.b	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000003264	ENSMAMG00000003284	ENSMAMG00000003308	ENSMAMG00000003483	ENSMAMG00000003426	ENSMAMG00000003798	ENSMAMG00000003523	ENSMAMG00000003821	ENSMAMG00000003884 #32	nr1d4b (ENSMAMG00000003916)	rargb (ENSMAMG00000003975)	calcoco1b (ENSMAMG00000024425)	ENSMAMG00000004064	ENSMAMG00000004107	ENSMAMG00000025341	ENSMAMG00000004275 #22	ENSMAMG00000004290	ENSMAMG00000004331	ENSMAMG00000004342	ENSMAMG00000004376	ENSMAMG00000004433	ENSMAMG00000004454	ENSMAMG00000004476	ENSMAMG00000004543	ENSMAMG00000004647	ENSMAMG00000004712	ENSMAMG00000004739	ENSMAMG00000004759	ENSMAMG00000004785	ENSMAMG00000004863	ENSMAMG00000005537
Pinecone sodierfish	MODERN SPECIES	19	ENSMMDG00005022236	ENSMMDG00005022239	zc3h10 (ENSMMDG00005022242)	ESYT1 (ENSMMDG00005022245)	ENSMMDG00005022251	ENSMMDG00005022252	LRP1 (ENSMMDG00005022266)	ENSMMDG00005022318	ENSMMDG00005022324	FAIM2 (ENSMMDG00005022329) #32	nr1d4b (ENSMMDG00005022340)	rargb (ENSMMDG00005022343)	ENSMMDG00005022345	SMUG1 (ENSMMDG00005022346)	ENSMMDG00005022350	LIMA1 (ENSMMDG00005022359) #22	SPRYD3 (ENSMMDG00005022362)	ENSMMDG00005022364	PIP4K2C (ENSMMDG00005022369)	AGAP2 (ENSMMDG00005022371)	cdk4 (ENSMMDG00005022373)	MARCHF9 (ENSMMDG00005022375)	mettl1 (ENSMMDG00005022378)	cyp27b1 (ENSMMDG00005022379)	mcrs1 (ENSMMDG00005022387)	suox (ENSMMDG00005022402)	MMP19 (ENSMMDG00005022403)	ENSMMDG00005022405	timeless (ENSMMDG00005022418)	prph (ENSMMDG00005022482)	ENSMMDG00005022615
Cod	MODERN SPECIES	4	ENSGMOG00000004340	ENSGMOG00000004305	ENSGMOG00000004246	ENSGMOG00000031565	ENSGMOG00000004194	ENSGMOG00000026220	ENSGMOG00000003994	ENSGMOG00000010099 #32	ENSGMOG00000027046	ENSGMOG00000017824	ENSGMOG00000002291	ENSGMOG00000029595	ENSGMOG00000026196	ENSGMOG00000022649	ENSGMOG00000002247	ENSGMOG00000026175 #22	ENSGMOG00000002182	ENSGMOG00000036458	ENSGMOG00000002129	ENSGMOG00000002094	ENSGMOG00000002079	ENSGMOG00000002066	ENSGMOG00000002044	ENSGMOG00000002018	ENSGMOG00000033752	ENSGMOG00000001993	ENSGMOG00000001982	ENSGMOG00000001928	ENSGMOG00000001632	ENSGMOG00000001598	ENSGMOG00000001579
Protacanthopterygii	ANCESTRAL SPECIES	19	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00920000149123.d	ENSGT00940000156736.d	ENSGT00390000013163	ENSGT00940000153700	ENSGT01030000234957	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00940000154808.a.b	ENSGT00950000183123	ENSGT00390000004405.a.c	ENSGT00940000157046.E	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000158956.d	ENSGT00940000153147.a.a	ENSGT00940000165646.B	ENSGT00940000157891	ENSGT00950000183033.a.b.b	ENSGT00390000000618	ENSGT00940000159322	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000157139.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	335				ENSGT00940000156458.e.a.a.a.a.a	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.f.b	ENSGT00940000161307.r.b	ENSGT00940000160009.i.b	ENSGT00940000160866.hb.b.a	ENSGT00940000161194.o.b	ENSGT00940000159254.b.a.a	ENSGT00940000161023.b.a.a	ENSGT00940000160794.d.b	ENSGT00390000004897	ENSGT00940000157046.E.pb.a	ENSGT00940000158313.a.a.a #22	ENSGT00940000158675.b.a	ENSGT00940000160528.a.c	ENSGT00940000158956.d.b	ENSGT00940000160351.f	ENSGT00940000154770.vb	ENSGT00940000158208.a.b.b	ENSGT00390000017840.g	ENSGT00950000182905.a.a.b.c	ENSGT00390000005536.n	ENSGT00390000003749	ENSGT00940000158593.a.d	ENSGT00390000016940.c.a.b.d	ENSGT00940000160203.a	ENSGT00940000154457.a.b.i	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	15	ENSGT00940000164283.b.b.e	ENSGT00940000156458.e.a.a.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.f.b	ENSGT00940000161307.r.b	ENSGT00940000160009.i.b	ENSGT00940000160866.hb.b.a	ENSGT00940000161194.o.b	ENSGT00940000159254.b.a.a	ENSGT00940000161023.b.a.a	ENSGT00940000160794.d.b	ENSGT01010000228119.a	ENSGT00390000004897	ENSGT00950000185603	ENSGT00940000157046.E.pb.a	ENSGT00940000158313.a.a.a #22	ENSGT00940000158675.b.a	ENSGT00940000160528.a.c	ENSGT00990000211052	ENSGT00940000158956.d.b	ENSGT00940000160351.f	ENSGT00940000154770.vb	ENSGT00940000158208.a.b.b	ENSGT00390000017840.g	ENSGT00950000182905.a.a.b.c	ENSGT00390000005536.n	ENSGT00390000003749	ENSGT00940000158593.a.d	ENSGT00390000016940.c.a.b.d	ENSGT00940000160203.a	ENSGT00940000154457.a.b.i
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT01050000244890.a.b.b.c.a.a.b #32	ENSGT00940000164283.b.b.e	ENSGT00940000156458.e.a.a.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.f.b	ENSGT00940000161307.r.b	ENSGT00940000160009.i.b	ENSGT01000000222015	ENSGT00940000160866.hb.b.a	ENSGT00940000159254.b.a.a	ENSGT00940000161023.b.a.a	ENSGT00940000160794.d.b	ENSGT01010000228119.a	ENSGT00390000004897.u.b	ENSGT00940000162287.G.l	ENSGT00940000158313.a.a.a #22	ENSGT00940000158675.b.a	ENSGT00940000160528.a.c	ENSGT00990000211052	ENSGT00940000158956.d.b	ENSGT00940000160351.f	ENSGT00940000154770.vb	ENSGT00940000158208.a.b.b	ENSGT00390000017840.g	ENSGT00950000182905.a.a.b.c	ENSGT00390000005536.n	ENSGT00390000003749.h	ENSGT00940000158593.a.d	ENSGT00390000016940.c.a.b.d	ENSGT00940000160203.a	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT01050000244890.a.b.b.c.a.a.b #32	ENSGT00940000164283.b.b.e	ENSGT00940000156458.e.a.a.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.f.b	ENSGT00940000161307.r.b	ENSGT00940000160009.i.b	ENSGT01000000222015	ENSGT00940000160866.hb.b.a	ENSGT00940000159254.b.a.a	ENSGT00940000161023.b.a.a	ENSGT00940000160794.d.b	ENSGT01010000228119.a	ENSGT00390000004897.u.b	ENSGT00940000162287.G.l	ENSGT00940000158313.a.a.a #22	ENSGT00940000158675.b.a	ENSGT00940000160528.a.c	ENSGT00990000211052	ENSGT00940000158956.d.b	ENSGT00940000160351.f	ENSGT00940000154770.vb	ENSGT00940000158208.a.b.b	ENSGT00390000017840.g	ENSGT00950000182905.a.a.b.c	ENSGT00390000005536.n	ENSGT00390000003749.h	ENSGT00940000158593.a.d	ENSGT00390000016940.c.a.b.c.a	ENSGT00390000016940.c.a.b.d	ENSGT00940000160203.a
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005040182 #32	nr1d4b (ENSOTSG00005040183)	RARG (ENSOTSG00005029782)	calcoco1b (ENSOTSG00005029783)	HOXC13 (ENSOTSG00005029785)	hoxc12b (ENSOTSG00005029786)	HOXC11 (ENSOTSG00005029788)	ENSOTSG00005029789	HOXC9 (ENSOTSG00005029792)	hoxc6b (ENSOTSG00005029793)	HOXC5 (ENSOTSG00005029794)	HOXC4 (ENSOTSG00005029796)	SMUG1 (ENSOTSG00005029797)	ENSOTSG00005029798	ENSOTSG00005029801	ENSOTSG00005029813 #22	SPRYD3 (ENSOTSG00005029819)	ENSOTSG00005029845	ENSOTSG00005029846	AGAP2 (ENSOTSG00005029850)	TSPAN31 (ENSOTSG00005029899)	cdk4 (ENSOTSG00005029900)	ENSOTSG00005029901	mettl1 (ENSOTSG00005029902)	cyp27b1 (ENSOTSG00005029907)	mcrs1 (ENSOTSG00005030187)	suox (ENSOTSG00005030192)	viml (ENSOTSG00005030194)	MMP19 (ENSOTSG00005030195)	ENSOTSG00005030198	ENSOTSG00005030199
Coho salmon	MODERN SPECIES	25	nr1d4b (ENSOKIG00005029392)	ENSOKIG00005029409	calcoco1b (ENSOKIG00005029519)	HOXC13 (ENSOKIG00005029541)	hoxc12b (ENSOKIG00005029549)	HOXC11 (ENSOKIG00005029562)	ENSOKIG00005029577	HOXC9 (ENSOKIG00005029595)	hoxc6b (ENSOKIG00005029603)	HOXC5 (ENSOKIG00005029631)	HOXC4 (ENSOKIG00005029643)	ENSOKIG00005029654	SMUG1 (ENSOKIG00005029667)	ENSOKIG00005029676	ENSOKIG00005029697	ENSOKIG00005029858 #22	SPRYD3 (ENSOKIG00005029871)	ENSOKIG00005029979	ENSOKIG00005030006	ENSOKIG00005030020	AGAP2 (ENSOKIG00005030140)	TSPAN31 (ENSOKIG00005030501)	CDK4 (ENSOKIG00005030553)	MARCHF9 (ENSOKIG00005030579)	mettl1 (ENSOKIG00005030597)	cyp27b1 (ENSOKIG00005030670)	suox (ENSOKIG00005030755)	MMP19 (ENSOKIG00005030747)	ENSOKIG00005030774	PRPH (ENSOKIG00005030805)	ENSOKIG00005030876
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000047235 #32	nr1d4b (ENSOMYG00000047239)	ENSOMYG00000047242	calcoco1b (ENSOMYG00000047246)	HOXC13 (ENSOMYG00000063208)	hoxc12b (ENSOMYG00000047250)	HOXC11 (ENSOMYG00000047253)	ENSOMYG00000047259	HOXC9 (ENSOMYG00000047265)	hoxc6b (ENSOMYG00000047269)	HOXC5 (ENSOMYG00000047273)	HOXC4 (ENSOMYG00000047279)	ENSOMYG00000077510	ENSOMYG00000073545	ENSOMYG00000047315	ENSOMYG00000047339 #22	ENSOMYG00000047345	ENSOMYG00000047349	ENSOMYG00000055579	ENSOMYG00000057750	ENSOMYG00000047352	AGAP2 (ENSOMYG00000047366)	TSPAN31 (ENSOMYG00000047383)	CDK4 (ENSOMYG00000047397)	MARCHF9 (ENSOMYG00000047409)	ENSOMYG00000049565	ENSOMYG00000047410	ENSOMYG00000047434	ENSOMYG00000047452	ENSOMYG00000047454	ENSOMYG00000047457
Salmo	ANCESTRAL SPECIES	42	ENSGT00940000156458.e.a.a.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.f.b	ENSGT00940000161307.r.b	ENSGT00940000160009.i.b	ENSGT00940000160866.hb.b.a	ENSGT00940000161194.o.b	ENSGT00940000159254.b.a.a	ENSGT00940000161023.b.a.a	ENSGT00940000160794.d.b	ENSGT01010000228119.a	ENSGT00390000004897	ENSGT00950000185603	ENSGT00390000004405.a.c.a	ENSGT00940000157046.E.pb.a	ENSGT00940000158313.a.a.a #22	ENSGT00940000158675.b.a	ENSGT00940000160528.a.c	ENSGT00990000211052	ENSGT00940000158956.d.b	ENSGT00940000160351.f	ENSGT00940000154770.vb	ENSGT00940000158208.a.b.b	ENSGT00390000017840.g	ENSGT00950000182905.a.a.b.c	ENSGT00390000005536.n	ENSGT00390000003749	ENSGT00940000158593.a.d	ENSGT00390000016940.c.a.b.d	ENSGT00940000160203.a	ENSGT00940000154457.a.b.i
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000081123	nr1d4b (ENSSSAG00000081117)	calcoco1 (ENSSSAG00000081131)	hoxc13 (ENSSSAG00000066797)	hoxc12b (ENSSSAG00000100264)	hoxc11 (ENSSSAG00000081138)	hoxc9 (ENSSSAG00000087969)	hoxc8 (ENSSSAG00000094585)	hoxc6b (ENSSSAG00000121322)	hoxc5 (ENSSSAG00000119352)	hoxc4bb (ENSSSAG00000081151)	ENSSSAG00000087500	ENSSSAG00000081164	ENSSSAG00000081167	ENSSSAG00000066590	ENSSSAG00000081193 #22	ENSSSAG00000066545	ENSSSAG00000083495	ENSSSAG00000113917	AGAP2 (ENSSSAG00000081214)	TSPAN31 (ENSSSAG00000114003)	CDK4 (ENSSSAG00000081232)	MARCHF9 (ENSSSAG00000106845)	mettl1 (ENSSSAG00000081237)	ENSSSAG00000109811	ENSSSAG00000065105	ENSSSAG00000081252	ENSSSAG00000081255	ENSSSAG00000081259	ENSSSAG00000081262	prph (ENSSSAG00000081265)
River trout	MODERN SPECIES	7	RARG (ENSSTUG00000003589)	calcoco1b (ENSSTUG00000003530)	HOXC13 (ENSSTUG00000003518)	hoxc12b (ENSSTUG00000003512)	HOXC11 (ENSSTUG00000003486)	HOXC9 (ENSSTUG00000003461)	HOXC8 (ENSSTUG00000003436)	hoxc6b (ENSSTUG00000003424)	HOXC5 (ENSSTUG00000003415)	HOXC4 (ENSSTUG00000003404)	ENSSTUG00000003399	SMUG1 (ENSSTUG00000003395)	ENSSTUG00000003378	ENSSTUG00000003370	ENSSTUG00000003129	ENSSTUG00000003065 #22	SPRYD3 (ENSSTUG00000003039)	ENSSTUG00000003024	ENSSTUG00000003009	AGAP2 (ENSSTUG00000002929)	TSPAN31 (ENSSTUG00000002246)	cdk4 (ENSSTUG00000020137)	MARCHF9 (ENSSTUG00000020124)	mettl1 (ENSSTUG00000020097)	cyp27b1 (ENSSTUG00000019763)	mcrs1 (ENSSTUG00000019739)	ENSSTUG00000019728	ENSSTUG00000019716	suox (ENSSTUG00000019706)	MMP19 (ENSSTUG00000019690)	ENSSTUG00000019680
Huchen	MODERN SPECIES	1022														ENSHHUG00000033631	ENSHHUG00000033640	ENSHHUG00000033781 #22	SPRYD3 (ENSHHUG00000033791)	ENSHHUG00000033797	AGAP2 (ENSHHUG00000033839)	TSPAN31 (ENSHHUG00000033881)	cdk4 (ENSHHUG00000033885)	MARCHF9 (ENSHHUG00000033893)	mettl1 (ENSHHUG00000033905)	ENSHHUG00000033916	cyp27b1 (ENSHHUG00000033922)	mcrs1 (ENSHHUG00000033936)	suox (ENSHHUG00000033949)	MMP19 (ENSHHUG00000033957)	ENSHHUG00000033974	ENSHHUG00000033982
Salmoninae	ANCESTRAL SPECIES	3	ENSGT00940000157899.a.a.a	ENSGT00940000155250.q.b.d	ENSGT01050000244890.a.b.b.c.a.a.a #32	ENSGT00940000164283.b.b.f	ENSGT00940000156458.e.a.a.a.b	ENSGT00940000161087.f.a	ENSGT00940000161307.r.a	ENSGT00940000160009.i.a	ENSGT00940000160855.h	ENSGT00940000160866.hb.b.b	ENSGT00940000161194.o.a	ENSGT00940000159254.b.a.b	ENSGT00940000161023.b.a.b	ENSGT00940000160794.d.a	ENSGT00940000157046.E.pb.b	ENSGT00940000158313.a.a.b #22	ENSGT00940000158675.b.b	ENSGT00940000160528.a.d	ENSGT00940000156890.a.a	ENSGT00940000154307.D.j	ENSGT00940000158956.d.a	ENSGT00940000154770.wb	ENSGT00940000158208.a.b.a	ENSGT00390000017840.h	ENSGT00950000182905.a.a.b.d	ENSGT00390000005536.m	ENSGT00940000158593.a.c	ENSGT00390000016940.c.a.b.c	ENSGT00390000015124	ENSGT00940000160203.b	ENSGT00940000154457.a.b.j
Salmoninae_a	ANCESTRAL SPECIES	21	ENSGT00940000164283.b.b.f	ENSGT00940000156458.e.a.a.a.b	ENSGT00940000161087.f.a	ENSGT00940000161307.r.a	ENSGT00940000160009.i.a	ENSGT00940000160855.h	ENSGT00940000160866.hb.b.b	ENSGT00940000161194.o.a	ENSGT00940000159254.b.a.b	ENSGT00940000161023.b.a.b	ENSGT00940000160794.d.a	ENSGT01050000247491	ENSGT00390000004405.a.c	ENSGT00940000159609.m	ENSGT00940000157046.E.pb.b	ENSGT00940000158313.a.a.b #22	ENSGT00940000158675.b.b	ENSGT00940000160528.a.d	ENSGT00940000156890.a.a	ENSGT00940000154307.D.j	ENSGT00940000158956.d.a	ENSGT00940000154770.wb	ENSGT00940000158208.a.b.a	ENSGT00390000017840.h	ENSGT00950000182905.a.a.b.d	ENSGT00390000005536.m	ENSGT00940000158593.a.c	ENSGT00390000016940.c.a.b.c.a	ENSGT00390000015124	ENSGT00940000160203.b	ENSGT00940000154457.a.b.j
Salmo	ANCESTRAL SPECIES	6	ENSGT01050000244890.a.b.b.c.a.a.a #32	ENSGT00940000164283.b.b.f	ENSGT00940000156458.e.a.a.a.b	ENSGT00940000161087.f.a	ENSGT00940000161307.r.a	ENSGT00940000160009.i.a	ENSGT00940000160855.h	ENSGT00940000160866.hb.b.b	ENSGT00940000161194.o.a	ENSGT00940000159254.a.a	ENSGT00940000161023.b.a.b	ENSGT00940000160794.d.a	ENSGT01050000247491	ENSGT00390000004405.a.c.b	ENSGT00940000157046.E.pb.b	ENSGT00940000158313.a.a.b #22	ENSGT00940000158675.b.b	ENSGT00940000160528.a.d	ENSGT00940000156890.a.a	ENSGT00940000154307.D.j	ENSGT00940000158956.d.a	ENSGT00940000154770.wb	ENSGT00940000158208.a.b.a	ENSGT00390000017840.h	ENSGT00950000182905.a.a.b.d	ENSGT00390000005536.m	ENSGT00940000158593.a.c	ENSGT00390000016940.c.a.b.c.a	ENSGT00390000015124	ENSGT00940000160203.b	ENSGT00940000154457.a.b.j
River trout	MODERN SPECIES	5	FAIM2 (ENSSTUG00000029227) #32	nr1d4b (ENSSTUG00000029258)	RARG (ENSSTUG00000029287)	HOXC13 (ENSSTUG00000029469)	hoxc12b (ENSSTUG00000029478)	HOXC11 (ENSSTUG00000029481)	HOXC10 (ENSSTUG00000029490)	HOXC9 (ENSSTUG00000029501)	HOXC8 (ENSSTUG00000029504)	HOXC6 (ENSSTUG00000029507)	HOXC5 (ENSSTUG00000029521)	HOXC4 (ENSSTUG00000029540)	hnrnpa1b (ENSSTUG00000029567)	ENSSTUG00000029611	ENSSTUG00000029791	ENSSTUG00000029958 #22	SPRYD3 (ENSSTUG00000029972)	ENSSTUG00000030009	ENSSTUG00000030016	PIP4K2C (ENSSTUG00000030040)	AGAP2 (ENSSTUG00000030435)	cdk4 (ENSSTUG00000030494)	MARCHF9 (ENSSTUG00000030513)	mettl1 (ENSSTUG00000030520)	cyp27b1 (ENSSTUG00000030531)	mcrs1 (ENSSTUG00000030592)	MMP19 (ENSSTUG00000030640)	ENSSTUG00000030724	timeless (ENSSTUG00000030744)	prph (ENSSTUG00000030868)	ENSSTUG00000030882
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000066824	hoxc12ba (ENSSSAG00000066791)	HOXC11 (ENSSSAG00000066786)	HOXC10 (ENSSSAG00000066783)	HOXC9 (ENSSSAG00000066780)	hoxc8ba (ENSSSAG00000066778)	hoxc6ba (ENSSSAG00000066773)	HOXC5 (ENSSSAG00000121048)	ENSSSAG00000066765	ENSSSAG00000081910	ENSSSAG00000086920	ENSSSAG00000066751	ENSSSAG00000066669	ENSSSAG00000081177	ENSSSAG00000083183	ENSSSAG00000066559 #22	ENSSSAG00000113311	ENSSSAG00000095933	ENSSSAG00000066258	ENSSSAG00000066219	AGAP2 (ENSSSAG00000066082)	ENSSSAG00000114855	CDK4 (ENSSSAG00000066064)	MARCHF9 (ENSSSAG00000120192)	ENSSSAG00000066042	ENSSSAG00000081242	ENSSSAG00000065034	ENSSSAG00000064977	timeless (ENSSSAG00000063060)	ENSSSAG00000064959	ENSSSAG00000095268
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000164283.b.b.f	ENSGT00940000156458.e.a.a.a.b	ENSGT00940000161087.f.a	ENSGT00940000161307.r.a	ENSGT00940000160009.i.a	ENSGT00940000160855.h	ENSGT00940000160866.hb.b.b	ENSGT00940000161194.o.a	ENSGT00940000159254.b.a.b	ENSGT00940000161023.b.a.b	ENSGT00940000160794.d.a	ENSGT01050000247491	ENSGT00390000004405.a.c	ENSGT00940000159609.m	ENSGT00940000157046.E.pb.b	ENSGT00940000158313.a.a.b #22	ENSGT00940000158675.b.b	ENSGT00940000160528.a.d	ENSGT00940000156890.a.a	ENSGT00940000154307.D.j	ENSGT00940000158956.d.a	ENSGT00940000154770.wb	ENSGT00940000158208.a.b.a	ENSGT00390000017840.h	ENSGT00950000182905.a.a.b.d	ENSGT00390000005536.m	ENSGT00940000158593.a.c	ENSGT00390000016940.c.a.b.c.b	ENSGT00390000015124	ENSGT00940000160203.b	ENSGT00940000154457.a.b.j
Rainbow trout	MODERN SPECIES	8	HOXC13 (ENSOMYG00000047249)	hoxc12b (ENSOMYG00000034861)	HOXC11 (ENSOMYG00000034848)	HOXC10 (ENSOMYG00000065214)	HOXC9 (ENSOMYG00000034842)	HOXC8 (ENSOMYG00000060152)	hoxc6b (ENSOMYG00000034830)	HOXC5 (ENSOMYG00000034816)	ENSOMYG00000034809	ENSOMYG00000034800	ENSOMYG00000034783	ENSOMYG00000034728	ENSOMYG00000053068	ENSOMYG00000034633	ENSOMYG00000034565	ENSOMYG00000034548 #22	ENSOMYG00000034484	IGFBP-6A2 (ENSOMYG00000034410)	ENSOMYG00000062479	ENSOMYG00000034294	AGAP2 (ENSOMYG00000034215)	CDK4 (ENSOMYG00000034166)	MARCHF9 (ENSOMYG00000034152)	ENSOMYG00000034078	ENSOMYG00000034027	ENSOMYG00000033987	ENSOMYG00000064376	ENSOMYG00000022941	ENSOMYG00000022779	ENSOMYG00000022743	ENSOMYG00000022658
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT01050000244890.a.b.b.c.a.b #32	ENSGT00940000164283.b.b.f	ENSGT00940000156458.e.a.a.a.b	ENSGT00940000161087.f.a	ENSGT00940000161307.r.a	ENSGT00940000160009.i.a	ENSGT00940000160855.h	ENSGT00940000160866.hb.b.b	ENSGT00940000161194.o.a	ENSGT00940000159254.b.a.b	ENSGT00940000161023.b.a.b	ENSGT00940000160794.d.a	ENSGT01050000247491	ENSGT00390000004405.a.c	ENSGT00940000157046.E.pb.b	ENSGT00940000158313.a.a.b #22	ENSGT00940000158675.b.b	ENSGT00940000160528.a.d	ENSGT00940000156890.a.a	ENSGT00940000154307.D.j	ENSGT00940000158956.d.a	ENSGT00940000154770.wb	ENSGT00940000158208.a.b.a	ENSGT00390000017840.h	ENSGT00950000182905.a.a.b.d	ENSGT00390000005536.m	ENSGT00940000158593.a.c	ENSGT00390000016940.c.a.b.c.b	ENSGT00390000015124	ENSGT00940000160203.b	ENSGT00940000154457.a.b.j
Coho salmon	MODERN SPECIES		nr1d4b (ENSOKIG00005003164)	RARG (ENSOKIG00005003174)	HOXC13 (ENSOKIG00005003185)	hoxc12b (ENSOKIG00005003188)	HOXC11 (ENSOKIG00005003196)	HOXC10 (ENSOKIG00005003203)	HOXC9 (ENSOKIG00005003215)	HOXC8 (ENSOKIG00005003220)	hoxc6b (ENSOKIG00005003225)	HOXC5 (ENSOKIG00005003229)	HOXC4 (ENSOKIG00005003234)	SMUG1 (ENSOKIG00005003238)	ENSOKIG00005003248	ENSOKIG00005003261	ENSOKIG00005003324	ENSOKIG00005003410 #22	SPRYD3 (ENSOKIG00005003429)	ENSOKIG00005003443	PIP4K2C (ENSOKIG00005003471)	GPR182 (ENSOKIG00005003575)	AGAP2 (ENSOKIG00005003591)	ENSOKIG00005003607	cdk4 (ENSOKIG00005003611)	MARCHF9 (ENSOKIG00005003617)	ENSOKIG00005003622	CYP27B1 (ENSOKIG00005003640)	mcrs1 (ENSOKIG00005003686)	MMP19 (ENSOKIG00005003697)	ENSOKIG00005003704	timeless (ENSOKIG00005003732)	prph (ENSOKIG00005003787)
Chinook salmon	MODERN SPECIES	11	nr1d4b (ENSOTSG00005004076)	RARG (ENSOTSG00005003820)	HOXC13 (ENSOTSG00005003811)	hoxc12b (ENSOTSG00005003808)	HOXC11 (ENSOTSG00005003806)	HOXC10 (ENSOTSG00005003803)	HOXC9 (ENSOTSG00005003799)	HOXC8 (ENSOTSG00005003795)	hoxc6b (ENSOTSG00005003791)	HOXC5 (ENSOTSG00005003788)	ENSOTSG00005003785	ENSOTSG00005003781	ENSOTSG00005003778	ENSOTSG00005003768	ENSOTSG00005003724	ENSOTSG00005003707 #22	SPRYD3 (ENSOTSG00005003701)	ENSOTSG00005003697	PIP4K2C (ENSOTSG00005002861)	GPR182 (ENSOTSG00005002818)	AGAP2 (ENSOTSG00005002775)	cdk4 (ENSOTSG00005002760)	ENSOTSG00005002756	mettl1 (ENSOTSG00005002749)	cyp27b1 (ENSOTSG00005002747)	mcrs1 (ENSOTSG00005002651)	MMP19 (ENSOTSG00005002642)	ENSOTSG00005002640	timeless (ENSOTSG00005002616)	prph (ENSOTSG00005002594)	ENSOTSG00005002585
Huchen	MODERN SPECIES	43	ENSHHUG00000010031 #32	nr1d4b (ENSHHUG00000010042)	RARG (ENSHHUG00000010056)	HOXC13 (ENSHHUG00000010233)	hoxc12b (ENSHHUG00000010270)	HOXC11 (ENSHHUG00000010282)	HOXC10 (ENSHHUG00000010298)	HOXC9 (ENSHHUG00000010319)	HOXC8 (ENSHHUG00000010327)	hoxc6b (ENSHHUG00000010348)	HOXC5 (ENSHHUG00000010375)	HOXC4 (ENSHHUG00000010380)	ENSHHUG00000010391	ENSHHUG00000010422	ENSHHUG00000010463	ENSHHUG00000010623 #22	SPRYD3 (ENSHHUG00000010644)	ENSHHUG00000010657	PIP4K2C (ENSHHUG00000010676)	ENSHHUG00000010777	AGAP2 (ENSHHUG00000010783)	cdk4 (ENSHHUG00000010796)	MARCHF9 (ENSHHUG00000010811)
Northern pike	MODERN SPECIES	16	nr1d4b (ENSELUG00000019859)	RARG (ENSELUG00000019908)	calcoco1b (ENSELUG00000019949)	HOXC13 (ENSELUG00000001535)	hoxc12b (ENSELUG00000019981)	hoxc11a (ENSELUG00000019989)	HOXC9 (ENSELUG00000019994)	HOXC8 (ENSELUG00000020022)	hoxc6b (ENSELUG00000020031)	HOXC5 (ENSELUG00000020039)	HOXC4 (ENSELUG00000020044)	SMUG1 (ENSELUG00000001240)	ENSELUG00000020089	ENSELUG00000020116	ENSELUG00000020300	ENSELUG00000020379 #22	SPRYD3 (ENSELUG00000020465)	igfbp6a (ENSELUG00000020481)	PIP4K2C (ENSELUG00000020497)	AGAP2 (ENSELUG00000020527)	TSPAN31 (ENSELUG00000020546)	cdk4 (ENSELUG00000020584)	ENSELUG00000020606	mettl1 (ENSELUG00000020660)	cyp27b1 (ENSELUG00000020673)	mcrs1 (ENSELUG00000020704)	suox (ENSELUG00000020717)	MMP19 (ENSELUG00000020724)	ENSELUG00000020750	timeless (ENSELUG00000020811)	prph (ENSELUG00000020863)
Osteoglossiformes	ANCESTRAL SPECIES	17	ENSGT00940000154578.A.c.a	ENSGT00940000159962.f #37	ENSGT01090000260051.b.a.a.a	ENSGT00940000155250.r	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b.b	ENSGT00940000156458.d	ENSGT00950000183025.b.b.e.b	ENSGT00940000159254.a.a	ENSGT00940000161023.b.b	ENSGT00940000159503	ENSGT00390000004897	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240.f	ENSGT00940000158313.a.a #22	ENSGT00940000158675	ENSGT00940000160528.a	ENSGT00940000158956.c.b	ENSGT00940000160351	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b.a	ENSGT00940000161297	ENSGT00940000155330.c #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT01050000244940.a.a.b #35	ENSGT00940000160756	ENSGT00940000166043
P. kingsleyae	MODERN SPECIES	106	hoxc12b (ENSPKIG00000006458)	HOXC11 (ENSPKIG00000006444)	HOXC10 (ENSPKIG00000006431)	HOXC9 (ENSPKIG00000006420)	HOXC8 (ENSPKIG00000006392)	hoxc6b (ENSPKIG00000006360)	hoxc5a (ENSPKIG00000006374)	HOXC4 (ENSPKIG00000006349)	ENSPKIG00000006338	SMUG1 (ENSPKIG00000006327)	cbx5 (ENSPKIG00000006288)	hnrnpa1b (ENSPKIG00000006240)	copz1 (ENSPKIG00000006185)	ENSPKIG00000006041	csad (ENSPKIG00000005916)	ENSPKIG00000005837 #22	spryd3 (ENSPKIG00000005793)	ENSPKIG00000005772	ENSPKIG00000005760	agap2 (ENSPKIG00000005670)	TSPAN31 (ENSPKIG00000005616)	cdk4 (ENSPKIG00000005571)	MARCHF9 (ENSPKIG00000005551)	mettl1 (ENSPKIG00000005523)	cyp27b1 (ENSPKIG00000005491)	EEF1AKMT3 (ENSPKIG00000005473)	slc11a2 (ENSPKIG00000005345) #15	ENSPKIG00000005270	ctdsp2 (ENSPKIG00000005236)	avil (ENSPKIG00000005162)	TMBIM6 (ENSPKIG00000005090) #35
Asian bonytongue	MODERN SPECIES	14	HOXC13 (ENSSFOG00015016006)	hoxc12b (ENSSFOG00015016049)	HOXC11 (ENSSFOG00015016066)	HOXC10 (ENSSFOG00015016087)	HOXC9 (ENSSFOG00015016094)	HOXC6 (ENSSFOG00015025872)	hoxc5a (ENSSFOG00015016224)	HOXC4 (ENSSFOG00015016239)	ENSSFOG00015016245	SMUG1 (ENSSFOG00015016264)	ENSSFOG00015016280	cbx5 (ENSSFOG00015032422)	copz1 (ENSSFOG00015016329)	ENSSFOG00015016361	csad (ENSSFOG00015016432)	ENSSFOG00015030375 #22	ENSSFOG00015016697 #22	spryd3 (ENSSFOG00015016713)	igfbp6a (ENSSFOG00015016738)	GPR182 (ENSSFOG00015016757)	agap2 (ENSSFOG00015016767)	TSPAN31 (ENSSFOG00015016811)	cdk4 (ENSSFOG00015016845)	MARCHF9 (ENSSFOG00015025463)	mettl1 (ENSSFOG00015016887)	cyp27b1 (ENSSFOG00015016916)	EEF1AKMT3 (ENSSFOG00015016973)	slc11a2 (ENSSFOG00015016986) #15	ENSSFOG00015017058	ctdsp2 (ENSSFOG00015017069)	avil (ENSSFOG00015017106)
Neopterygii	ANCESTRAL SPECIES	181								ENSGT00390000004897	ENSGT00940000158801	ENSGT00950000183123	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT00940000158313.a.b #22	ENSGT00940000158675	ENSGT00940000160528	ENSGT00940000156890.a.a	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956	ENSGT00940000160351	ENSGT00940000154770	ENSGT00940000158208	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000161297	ENSGT00940000155330 #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587
Osteoglossocephalai	ANCESTRAL SPECIES	45	ENSGT00940000160855	ENSGT00940000160866	ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.a	ENSGT00940000160794	ENSGT00940000159503	ENSGT00390000004897	ENSGT00940000158801	ENSGT00950000183123	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT00940000158313.a.b #22	ENSGT00940000158675	ENSGT00940000160528.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000154307.D	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000161297	ENSGT00940000155330.c #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587
Clupeocephala	ANCESTRAL SPECIES	39	ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.a	ENSGT00940000160794	ENSGT00940000159522	ENSGT00940000155029.c.a.f	ENSGT00940000157315	ENSGT00940000158801	ENSGT00950000183123	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000161297	ENSGT00940000155330.c #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587
Otomorpha	ANCESTRAL SPECIES	22	ENSGT00940000159254.b	ENSGT00940000161023.b.b	ENSGT00940000160794	ENSGT00940000159522	ENSGT00940000155029.c.a.e.b	ENSGT00940000157315.kc	ENSGT00940000157315.jc.b	ENSGT00940000158801	ENSGT00940000165646.A	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.a.s	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155356.c	ENSGT00940000156173	ENSGT00940000156199.a.b	ENSGT01100000263537.b.a.a.a.b	ENSGT00940000157644	ENSGT00940000165549	ENSGT00390000012939
Clupeiformes	ANCESTRAL SPECIES	81										ENSGT00940000158801	ENSGT00940000165646.A	ENSGT00950000182892.a.a.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.a.s	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155356.c	ENSGT00940000156173	ENSGT00940000156199.a.b	ENSGT01100000263537.b.a.a.a.b	ENSGT00940000157644	ENSGT00940000165549	ENSGT00390000012939
Atlantic herring	MODERN SPECIES	20	FAIM2 (ENSCHAG00000026778) #32	mfsd5 (ENSCHAG00000026783)	nr1d4a (ENSCHAG00000026786)	rarga (ENSCHAG00000026794)	calcoco1a (ENSCHAG00000026808)	hoxc13a (ENSCHAG00000026825)	hoxc12a (ENSCHAG00000026828)	hoxc6a (ENSCHAG00000026834)	hoxc8a (ENSCHAG00000026837)	hoxc9a (ENSCHAG00000026839)	ENSCHAG00000026842	ENSCHAG00000026843	znf740b (ENSCHAG00000027128)	csad (ENSCHAG00000026877)	zgc:174906 (ENSCHAG00000027131)	lima1a (ENSCHAG00000027133) #22	spryd3 (ENSCHAG00000027136)	igfbp6b (ENSCHAG00000027146)	pip4k2ca (ENSCHAG00000027154)	gpr182 (ENSCHAG00000027173)	ZBTB39 (ENSCHAG00000027174)	agap2 (ENSCHAG00000027181)	tspan31 (ENSCHAG00000027200)	MARCHF9 (ENSCHAG00000027201)	HIPK1 (ENSCHAG00000027223)	ube2j2 (ENSCHAG00000027342)	ACAP3 (ENSCHAG00000027379)	ENSCHAG00000027517	ints11 (ENSCHAG00000027520)	cptp (ENSCHAG00000027527)	cptp (ENSCHAG00000027528)
Denticle herring	MODERN SPECIES	1	rarga (ENSDCDG00000004066)	calcoco1a (ENSDCDG00000004166)	HOXC13 (ENSDCDG00000004169)	hoxc10a (ENSDCDG00000004170)	hoxc11a (ENSDCDG00000004171)	hoxc9a (ENSDCDG00000004174)	hoxc8a (ENSDCDG00000004176)	hoxc4a (ENSDCDG00000004178)	ENSDCDG00000004182	cbx5 (ENSDCDG00000004185)	ENSDCDG00000004186	nfe2 (ENSDCDG00000004189)	znf740b (ENSDCDG00000004192)	csad (ENSDCDG00000004195)	zgc:174906 (ENSDCDG00000004247)	ENSDCDG00000004252 #22	spryd3 (ENSDCDG00000004258)	igfbp6b (ENSDCDG00000004262)	erbb3b (ENSDCDG00000004294)	ENSDCDG00000004767	fam3a (ENSDCDG00000004787)	idh3g (ENSDCDG00000004857)	AVPR2 (ENSDCDG00000005367)	SSR4 (ENSDCDG00000005368)	arhgap4a (ENSDCDG00000005373)	galnt6 (ENSDCDG00000005384)	ADCY6 (ENSDCDG00000005446)	CACNB3 (ENSDCDG00000009942)	RND1 (ENSDCDG00000014759)	dtx3 (ENSDCDG00000014772)	ptges3a (ENSDCDG00000014784)
Otophysi	ANCESTRAL SPECIES	77	ENSGT00940000159254.b	ENSGT00940000161023.b.b	ENSGT00940000160794	ENSGT00940000159522	ENSGT00940000155029.c.a.e.b	ENSGT00940000157315.kc	ENSGT00940000157315.jc.b	ENSGT00940000158801	ENSGT00940000165646.A	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.a.s	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155356.c	ENSGT00940000156173.f	ENSGT00940000156199.a.b.c	ENSGT01100000263537.b.a.a.a.b	ENSGT00940000157644	ENSGT00940000165549	ENSGT00390000012939
Cyprinoidei	ANCESTRAL SPECIES		ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.b.b	ENSGT00940000160794	ENSGT00940000159522	ENSGT00940000155029.c.a.e.b	ENSGT00940000157315.kc	ENSGT00940000157315.jc.b	ENSGT00940000158801	ENSGT00940000165646.A.i	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a.g	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.a.s	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155356.c	ENSGT00940000156173.f	ENSGT00940000156199.a.b.c	ENSGT01100000263537.b.a.a.a.b	ENSGT00940000157644.m.a	ENSGT00940000165549	ENSGT00390000012939
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	417													ENSGT00940000159609.k.b	ENSGT00940000158240.h	ENSGT00540000073797.e	ENSGT00940000158313.a.b.a #22	ENSGT00940000158675.a.a	ENSGT00940000160528.b.a	ENSGT00940000156890.a.a.s.d	ENSGT00940000154307.D.a	ENSGT00940000160722.d	ENSGT00940000158956.c.e	ENSGT00940000160351.h	ENSGT00940000158208.a.a.a	ENSGT00940000155356.c.h	ENSGT00940000156173.f.b	ENSGT00940000156199.a.b.c.a	ENSGT01100000263537.b.a.a.a.b.c	ENSGT00940000157644.m.a.a	ENSGT00940000165549.d	ENSGT00390000012939
Cyprininae_a	ANCESTRAL SPECIES	17	ENSGT00940000160009.y	ENSGT00940000160855.i	ENSGT00940000161194.f	ENSGT00940000160866.t	ENSGT00940000159254.b.k.a	ENSGT00940000161023.b.b.b	ENSGT00940000160794.e.a	ENSGT00940000157315.jc.b.a.a	ENSGT00940000158801.d	ENSGT00940000165646.A.i.a.b	ENSGT00950000182892.a.a.a.a	ENSGT00390000004405.a.g	ENSGT00940000159609.k.b	ENSGT00940000158240.g.a	ENSGT00540000073797.e	ENSGT00940000158313.a.b.a #22	ENSGT00940000158675.a.a	ENSGT00940000160528.b.a	ENSGT00940000156890.a.a.s.d	ENSGT00940000154307.D.a	ENSGT00940000160722.d	ENSGT00940000158956.c.e	ENSGT00940000160351.h	ENSGT00940000158208.a.a.a	ENSGT00940000155356.c.h	ENSGT00940000156173.f.b	ENSGT00940000156199.a.b.c.a	ENSGT01100000263537.b.a.a.a.b.c	ENSGT00940000157644.m.a.a	ENSGT00940000165549.d	ENSGT00390000012939
Golden-line barbel	MODERN SPECIES	12	hoxc11a (ENSSGRG00000023881)	hoxc10a (ENSSGRG00000023883)	hoxc8a (ENSSGRG00000023884)	hoxc9a (ENSSGRG00000023889)	hoxc6a (ENSSGRG00000023897)	hoxc5a (ENSSGRG00000023898)	hoxc4a (ENSSGRG00000023900)	hoxc3a (ENSSGRG00000023906)	hoxc1a (ENSSGRG00000023907)	cbx5 (ENSSGRG00000023910)	ENSSGRG00000023914	nfe2 (ENSSGRG00000023917)	COPZ1 (ENSSGRG00000023922)	znf740b (ENSSGRG00000024052)	csad (ENSSGRG00000024063)	lima1a (ENSSGRG00000024522) #22	spryd3 (ENSSGRG00000024523)	igfbp6b (ENSSGRG00000024524)	pip4k2ca (ENSSGRG00000024535)	ZBTB39 (ENSSGRG00000024578)	gpr182 (ENSSGRG00000024579)	agap2 (ENSSGRG00000024581)	tspan31 (ENSSGRG00000024583)	ENSSGRG00000024585	HIPK1 (ENSSGRG00000024586)	ube2j2 (ENSSGRG00000024588)	ACAP3 (ENSSGRG00000024622)	ints11 (ENSSGRG00000026652)	cptp (ENSSGRG00000027308)	ubxn10 (ENSSGRG00000027310)	ddx19a (ENSSGRG00000027318)
Goldfish	MODERN SPECIES	42	g0s2 (ENSCARG00000060694)	camk1gb (ENSCARG00000060710)	ENSCARG00000060756	mical1 (ENSCARG00000060795)	src (ENSCARG00000060896)	ENSCARG00000060949	cbln4 (ENSCARG00000060973)	ENSCARG00000061011	PFDN4 (ENSCARG00000061021)	zgc:112994 (ENSCARG00000061049)	znf217 (ENSCARG00000061062)	TSHZ2 (ENSCARG00000061083)	znf740b (ENSCARG00000061097)	csad (ENSCARG00000061438)	zgc:174906 (ENSCARG00000063235)	lima1a (ENSCARG00000063248) #22	spryd3 (ENSCARG00000063287)	igfbp6b (ENSCARG00000063462)	pip4k2ca (ENSCARG00000063515)	gpr182 (ENSCARG00000063863)	ZBTB39 (ENSCARG00000063870)	agap2 (ENSCARG00000063898)	tspan31 (ENSCARG00000064096)	MARCHF9 (ENSCARG00000064140)	HIPK1 (ENSCARG00000064199)	ube2j2 (ENSCARG00000064456)	ACAP3 (ENSCARG00000064666)	INTS11 (ENSCARG00000066488)	cptp (ENSCARG00000066501)	ubxn10 (ENSCARG00000066508)	ddx19a (ENSCARG00000066542)
Cyprininae	ANCESTRAL SPECIES	3	ENSGT00940000160794.f	ENSGT00940000159522.j	ENSGT00940000157315.jc.b.b	ENSGT00940000158801.c	ENSGT00940000165646.A.i.b	ENSGT00950000182892.a.a.a.b	ENSGT00940000160794.e.a	ENSGT00940000157315.jc.b.a.a	ENSGT00940000158801.d	ENSGT00940000165646.A.i.a.b	ENSGT00950000182892.a.a.a.a	ENSGT00390000004405.a.h	ENSGT00940000159609.l	ENSGT00940000158240.g.b	ENSGT00540000073797.f	ENSGT00940000158313.a.b.b #22	ENSGT00940000158675.a.b	ENSGT00940000160528.b.b	ENSGT00940000156890.a.a.s.c	ENSGT00940000154307.D.b	ENSGT00940000160722.c	ENSGT00940000158956.c.f	ENSGT00940000160351.g	ENSGT00940000158208.a.a.b	ENSGT00940000155356.c.g	ENSGT00940000156173.f.a	ENSGT00940000156199.a.b.c.b	ENSGT01100000263537.b.a.a.a.b.d	ENSGT00940000157644.m.a.b	ENSGT00940000165549.c	ENSGT00990000208651.c.b
Goldfish	MODERN SPECIES	15	hoxc10a (ENSCARG00000017485)	hoxc9a (ENSCARG00000017494)	hoxc8a (ENSCARG00000017499)	hoxc6a (ENSCARG00000017507)	hoxc5a (ENSCARG00000017513)	hoxc4a (ENSCARG00000017516)	hoxc3a (ENSCARG00000017524)	ENSCARG00000017529	cbx5 (ENSCARG00000017539)	HNRNPA3 (ENSCARG00000017554)	nfe2 (ENSCARG00000017560)	copz1 (ENSCARG00000017576)	znf740b (ENSCARG00000017673)	csad (ENSCARG00000017734)	zgc:174906 (ENSCARG00000003825)	lima1a (ENSCARG00000003837) #22	spryd3 (ENSCARG00000003870)	igfbp6b (ENSCARG00000004051)	pip4k2ca (ENSCARG00000004132)	gpr182 (ENSCARG00000004623)	ZBTB39 (ENSCARG00000004627)	agap2 (ENSCARG00000004652)	tspan31 (ENSCARG00000004699)	MARCHF9 (ENSCARG00000004729)	HIPK1 (ENSCARG00000004742)	ube2j2 (ENSCARG00000004772)	ACAP3 (ENSCARG00000004868)	ENSCARG00000006201	ints11 (ENSCARG00000006294)	cptp (ENSCARG00000006744)	ENSCARG00000006752
Cyprininae_a	ANCESTRAL SPECIES	5	ENSGT00940000160855.j	ENSGT00940000160866.s	ENSGT00940000161194.e	ENSGT00940000159254.b.k.b	ENSGT00940000161023.b.b.a	ENSGT00940000160794.f	ENSGT00940000159522.j	ENSGT00940000157315.jc.b.b	ENSGT00940000158801.c	ENSGT00940000165646.A.i.b	ENSGT00950000182892.a.a.a.b	ENSGT00390000004405.a.h	ENSGT00940000159609.l	ENSGT00940000158240.g.b	ENSGT00540000073797.f	ENSGT00940000158313.a.b.b #22	ENSGT00940000158675.a.b	ENSGT00940000160528.b.b	ENSGT00940000156890.a.a.s.c	ENSGT00940000154307.D.b	ENSGT00940000160722.c	ENSGT00940000158956.c.f	ENSGT00940000160351.g	ENSGT00940000158208.a.a.b	ENSGT00940000155356.c.g	ENSGT00940000156173.f.a	ENSGT00940000156199.a.b.c.b	ENSGT01100000263537.b.a.a.a.b.d	ENSGT00940000157644.m.a.b	ENSGT00940000165549.c	ENSGT00990000208651.c.b
Common carp reference	MODERN SPECIES	49	hoxc11a (ENSCCRG00000077655)	HOXC10 (ENSCCRG00000054036)	hoxc9a (ENSCCRG00000059937)	hoxc8a (ENSCCRG00000061401)	hoxc6a (ENSCCRG00000081405)	hoxc5a (ENSCCRG00000078343)	ENSCCRG00000016735	hoxc1a (ENSCCRG00000077208)	cbx5 (ENSCCRG00000050088)	ENSCCRG00000050096	nfe2 (ENSCCRG00000075971)	COPZ1 (ENSCCRG00000050142)	znf740b (ENSCCRG00000056856)	csad (ENSCCRG00000050160)	zgc:174906 (ENSCCRG00000075690)	lima1a (ENSCCRG00000006587) #22	igfbp6b (ENSCCRG00000044886)	spryd3 (ENSCCRG00000044897)	pip4k2ca (ENSCCRG00000042958)	gpr182 (ENSCCRG00000074891)	ENSCCRG00000081997	agap2 (ENSCCRG00000034027)	tspan31 (ENSCCRG00000072687)	MARCHF9 (ENSCCRG00000068017)	ENSCCRG00000041778	ube2j2 (ENSCCRG00000041783)	ACAP3 (ENSCCRG00000024019)	ENSCCRG00000069861	ints11 (ENSCCRG00000023890)	cptp (ENSCCRG00000077753)	ENSCCRG00000082213
Golden-line barbel	MODERN SPECIES	177	hoxc11a (ENSSGRG00000018344)	hoxc10a (ENSSGRG00000018343)	hoxc9a (ENSSGRG00000018342)	hoxc8a (ENSSGRG00000018340)	hoxc6a (ENSSGRG00000018339)	hoxc5a (ENSSGRG00000018338)	hoxc4a (ENSSGRG00000018335)	hoxc3a (ENSSGRG00000018334)	ENSSGRG00000018332	cbx5 (ENSSGRG00000018330)	ENSSGRG00000018194	nfe2 (ENSSGRG00000018192)	znf740b (ENSSGRG00000018190)	csad (ENSSGRG00000018188)	zgc:174906 (ENSSGRG00000018187)	lima1a (ENSSGRG00000018185) #22	igfbp6b (ENSSGRG00000018182)	spryd3 (ENSSGRG00000018068)	pip4k2ca (ENSSGRG00000017922)	gpr182 (ENSSGRG00000017915)	agap2 (ENSSGRG00000017905)	tspan31 (ENSSGRG00000017903)	ENSSGRG00000017902	ENSSGRG00000017901	ube2j2 (ENSSGRG00000017900)	ACAP3 (ENSSGRG00000015757)	ENSSGRG00000015700	ENSSGRG00000015698	cptp (ENSSGRG00000015697)	ENSSGRG00000015692
Zebrafish	MODERN SPECIES	15	hoxc11a (ENSDARG00000070351)	hoxc3a (ENSDARG00000070339)	hoxc9a (ENSDARG00000092809)	hoxc8a (ENSDARG00000070346)	hoxc6a (ENSDARG00000070343)	hoxc5a (ENSDARG00000070340)	hoxc4a (ENSDARG00000070338)	hoxc1a (ENSDARG00000070337)	cbx5 (ENSDARG00000061187)	hnrnpa1b (ENSDARG00000036675)	nfe2 (ENSDARG00000020606)	copz1 (ENSDARG00000017844)	znf740b (ENSDARG00000061174)	csad (ENSDARG00000026348)	zgc:174906 (ENSDARG00000075314)	lima1a (ENSDARG00000101441) #22	spryd3 (ENSDARG00000101982)	igfbp6b (ENSDARG00000090833)	pip4k2ca (ENSDARG00000031020)	gpr182 (ENSDARG00000036616)	ENSDARG00000019265	agap2 (ENSDARG00000099874)	ENSDARG00000114281	tspan31 (ENSDARG00000074554)	MARCHF9 (ENSDARG00000055740)	ENSDARG00000063594	ube2j2 (ENSDARG00000061161)	ACAP3 (ENSDARG00000075990)	ints11 (ENSDARG00000025212)	cptp (ENSDARG00000052537)	ubxn10 (ENSDARG00000052535)
Characiphysae	ANCESTRAL SPECIES	16	ENSGT00940000160855	ENSGT00940000160866	ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.b.b	ENSGT00940000160794	ENSGT00940000161892	ENSGT00940000158801	ENSGT00940000165646.A	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.a.s	ENSGT00940000154307.D.d	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000158208.a.a	ENSGT00940000156199.a.b.c	ENSGT01100000263537.b.a.a.a.b	ENSGT00940000157644.k	ENSGT00940000165549	ENSGT00390000012939	ENSGT01060000249781	ENSGT00940000154417.c	ENSGT00940000176954
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00940000160009	ENSGT00940000160855	ENSGT00940000160866	ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.b.b	ENSGT00940000160794	ENSGT00940000161892	ENSGT00940000158801	ENSGT00940000165646.A	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.a.s	ENSGT00940000154307.D.d	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000158208.a.a	ENSGT00940000156199.a.b.c	ENSGT01100000263537.b.a.a.a.b	ENSGT00940000157644.k	ENSGT00940000165549	ENSGT00390000012939	ENSGT01060000249781	ENSGT00940000154417.c	ENSGT00940000176954
Characoidei	ANCESTRAL SPECIES	8	ENSGT00940000160855	ENSGT00940000160866	ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.b.b	ENSGT00940000160794	ENSGT00940000159522	ENSGT00940000157315.jc.b	ENSGT00940000158801	ENSGT00940000165646.A	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.a.s	ENSGT00940000154307.D.d	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000158208.a.a	ENSGT00940000155356.c	ENSGT00940000156199.a.b.c	ENSGT01100000263537.b.a.a.a.b	ENSGT00940000157644.k	ENSGT00940000165549	ENSGT00390000012939	ENSGT01060000249781	ENSGT00940000154417.c
Red-bellied piranha	MODERN SPECIES	134	hoxc10a (ENSPNAG00000021203)	hoxc9a (ENSPNAG00000021209)	hoxc8a (ENSPNAG00000021232)	hoxc6a (ENSPNAG00000021260)	hoxc5a (ENSPNAG00000021269)	hoxc4a (ENSPNAG00000021502)	hoxc3a (ENSPNAG00000021526)	ENSPNAG00000021533	cbx5 (ENSPNAG00000021545)	ENSPNAG00000021630	nfe2 (ENSPNAG00000021647)	copz1 (ENSPNAG00000021681)	znf740b (ENSPNAG00000021708)	csad (ENSPNAG00000021775)	zgc:174906 (ENSPNAG00000021784)	lima1a (ENSPNAG00000021800) #22	spryd3 (ENSPNAG00000021834)	igfbp6b (ENSPNAG00000021849)	pip4k2ca (ENSPNAG00000021892)	gpr182 (ENSPNAG00000021896)	ENSPNAG00000021903	agap2 (ENSPNAG00000021981)	tspan31 (ENSPNAG00000022011)	MARCHF9 (ENSPNAG00000022027)	HIPK1 (ENSPNAG00000022109)	ENSPNAG00000022136	ints11 (ENSPNAG00000022204)	cptp (ENSPNAG00000022219)	ubxn10 (ENSPNAG00000022225)	ENSPNAG00000022242	ddx19a (ENSPNAG00000022254)
Mexicana tetra	MODERN SPECIES	6	hoxc11a (ENSAMXG00000035730)	hoxc10a (ENSAMXG00000029557)	hoxc9a (ENSAMXG00000043087)	hoxc8a (ENSAMXG00000036336)	hoxc6a (ENSAMXG00000035053)	hoxc5a (ENSAMXG00000009401)	hoxc3a (ENSAMXG00000009415)	ENSAMXG00000039479	cbx5 (ENSAMXG00000006302)	hnrnpa1a (ENSAMXG00000006296)	nfe2 (ENSAMXG00000031227)	copz1 (ENSAMXG00000035457)	znf740b (ENSAMXG00000041199)	csad (ENSAMXG00000004864)	zgc:174906 (ENSAMXG00000030434)	lima1a (ENSAMXG00000004876) #22	spryd3 (ENSAMXG00000004885)	igfbp6b (ENSAMXG00000042326)	pip4k2ca (ENSAMXG00000042578)	gpr182 (ENSAMXG00000025983)	ZBTB39 (ENSAMXG00000004898)	agap2 (ENSAMXG00000004903)	tspan31 (ENSAMXG00000029239)	ENSAMXG00000004912	HIPK1 (ENSAMXG00000004916)	ube2j2 (ENSAMXG00000004921)	ACAP3 (ENSAMXG00000004927)	ENSAMXG00000041584	ints11 (ENSAMXG00000038758)	cptp (ENSAMXG00000004933)	ENSAMXG00000043047
Electric eel	MODERN SPECIES	30	hoxc10a (ENSEEEG00000020354)	hoxc9a (ENSEEEG00000020358)	hoxc8a (ENSEEEG00000020360)	hoxc6a (ENSEEEG00000020364)	hoxc5a (ENSEEEG00000020367)	hoxc4a (ENSEEEG00000020368)	hoxc3a (ENSEEEG00000020371)	ENSEEEG00000020372	cbx5 (ENSEEEG00000020373)	ENSEEEG00000020377	nfe2 (ENSEEEG00000020380)	copz1 (ENSEEEG00000020386)	znf740b (ENSEEEG00000020393)	csad (ENSEEEG00000020397)	zgc:174906 (ENSEEEG00000020400)	lima1a (ENSEEEG00000020401) #22	spryd3 (ENSEEEG00000020407)	igfbp6b (ENSEEEG00000000036)	pip4k2ca (ENSEEEG00000000379)	ENSEEEG00000001003	ZBTB39 (ENSEEEG00000001004)	agap2 (ENSEEEG00000001068)	tspan31 (ENSEEEG00000001753)	MARCHF9 (ENSEEEG00000001755)	ENSEEEG00000001756	ube2j2 (ENSEEEG00000001758)	ACAP3 (ENSEEEG00000001768)	ints11 (ENSEEEG00000001818)	cptp (ENSEEEG00000001847)	ubxn10 (ENSEEEG00000001848)	ddx19a (ENSEEEG00000001851)
Channel catfish	MODERN SPECIES	6	hoxc9 (ENSIPUG00000022389)	hoxc6a (ENSIPUG00000022391)	hoxc5 (ENSIPUG00000022397)	hoxc4 (ENSIPUG00000022399)	ENSIPUG00000022407	ENSIPUG00000022416	Cbx5 (ENSIPUG00000022419)	hnrnpa1b (ENSIPUG00000022432)	ENSIPUG00000022440	nfe2 (ENSIPUG00000022455)	copz1 (ENSIPUG00000022458)	ZNF740 (ENSIPUG00000022516)	CSAD (ENSIPUG00000022545)	zgc:174906 (ENSIPUG00000022564)	ENSIPUG00000022565	ENSIPUG00000022571 #22	spryd3 (ENSIPUG00000022577)	IGFBP6 (ENSIPUG00000022586)	pip4k2c (ENSIPUG00000022593)	ENSIPUG00000022621	gpr182 (ENSIPUG00000022623)	gpr182 (ENSIPUG00000022625)	zbtb39 (ENSIPUG00000022627)	Agap1 (ENSIPUG00000022628)	tspan31 (ENSIPUG00000022638)	March9 (ENSIPUG00000022666)	HIPK1 (ENSIPUG00000022675)	ube2j2 (ENSIPUG00000022702)	ACAP3 (ENSIPUG00000022719)	cpsf3l (ENSIPUG00000022761)	ENSIPUG00000022782
Euteleosteomorpha	ANCESTRAL SPECIES	2	ENSGT00940000168241	ENSGT00940000159254.b	ENSGT00940000161023.a	ENSGT00940000161023.b.b	ENSGT00940000159522	ENSGT00940000155029.c.a.f	ENSGT00940000157315	ENSGT00940000158801	ENSGT00950000183123	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159609	ENSGT00940000158240	ENSGT00540000073797	ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000160722	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01050000244940.a.a #35	ENSGT00390000002215.j	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00940000154971.v
Protacanthopterygii	ANCESTRAL SPECIES	6	ENSGT00940000160794.c.a	ENSGT00940000168241	ENSGT00940000159254.b	ENSGT00940000161023.b.b	ENSGT00940000160794.c.b	ENSGT00940000159522	ENSGT00940000155029.c.a.f	ENSGT00940000157315	ENSGT00940000158801	ENSGT00940000165646.A	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a.d	ENSGT00940000159609	ENSGT00540000073797	ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351.e	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a.b.b	ENSGT01050000244940.a.a.g.b #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544.j	ENSGT00940000159544.i
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	427	ENSGT00940000161307.q.b	ENSGT00940000160009.j.a	ENSGT00940000160855.g.b	ENSGT00940000160866.hb.a.b	ENSGT00940000159254.b.b.b	ENSGT00940000161023.b.b.d	ENSGT00940000160794.c.a.a	ENSGT00940000160794.c.b	ENSGT00940000157315.ic.b	ENSGT00940000158801.f.a	ENSGT00940000165646.A.k.a	ENSGT00950000182892.a.a.a.d	ENSGT00390000004405.a.d.b	ENSGT00940000159609.n.b	ENSGT00940000167488	ENSGT00940000158313.a.b.c #22
Salmoninae_a	ANCESTRAL SPECIES	27	ENSGT00940000161087.e.a	ENSGT00940000161307.q.b	ENSGT00940000160009.j.a	ENSGT00940000160855.g.b	ENSGT00940000160866.hb.a.b	ENSGT00940000159254.b.b.b	ENSGT00940000161023.b.b.d	ENSGT00940000160794.c.a.a	ENSGT00940000160794.c.b	ENSGT00940000157315.ic.b	ENSGT00940000158801.f.a	ENSGT00940000165646.A.k.a	ENSGT00950000182892.a.a.a.d	ENSGT00390000004405.a.d.b	ENSGT00940000159609.n.b	ENSGT00940000158313.a.b.c #22	ENSGT00940000160528.b.d	ENSGT00940000156890.a.b.g	ENSGT00940000154307.D.i.b	ENSGT00940000160722.e	ENSGT00940000158956.c.h	ENSGT00940000158208.a.a.e	ENSGT01040000240451.a.b.a.b.b.b	ENSGT01050000244940.a.a.g.b.a #35	ENSGT00530000063607.a.m.a #34	ENSGT00940000159544.i	ENSGT00390000002944.d.b	ENSGT00950000183188.A.a.b.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.a.b	ENSGT00940000154457.a.a.a.b.a.a.b	ENSGT00940000159411.b.`c.a
Oncorhynchus	ANCESTRAL SPECIES	20	ENSGT00950000183025.b.b.e.a.a	ENSGT00940000161087.e.a	ENSGT00940000161307.q.b	ENSGT00940000160009.j.a	ENSGT00940000160855.g.b	ENSGT00940000160866.hb.a.b	ENSGT00940000159254.b.b.b	ENSGT00940000161023.b.b.d	ENSGT00940000160794.c.a.a	ENSGT00940000157315.ic.b	ENSGT00940000158801.f.a	ENSGT00940000165646.A.k.a	ENSGT00950000182892.a.a.a.d	ENSGT00390000004405.a.d.b	ENSGT00940000159609.n.b	ENSGT00940000158313.a.b.c #22	ENSGT00940000160528.b.d	ENSGT00940000156890.a.b.g	ENSGT00940000154307.D.i.b	ENSGT00940000160722.e	ENSGT00940000158956.c.h	ENSGT00940000158208.a.a.e	ENSGT01040000240451.a.b.a.b.b.b	ENSGT01050000244940.a.a.g.b.a #35	ENSGT00530000063607.a.m.a #34	ENSGT00940000159544.i	ENSGT00390000002944.d.b	ENSGT00950000183188.A.a.b.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.b	ENSGT00940000154457.a.a.a.b.a.a.b	ENSGT00940000159411.b.`c.a
Rainbow trout	MODERN SPECIES	30	hoxc11a (ENSOMYG00000009970)	HOXC10 (ENSOMYG00000009956)	hoxc9a (ENSOMYG00000065775)	hoxc6a (ENSOMYG00000022752)	hoxc5a (ENSOMYG00000050107)	ENSOMYG00000022740	hoxc4a (ENSOMYG00000022725)	ENSOMYG00000075605	ENSOMYG00000076580	cbx5 (ENSOMYG00000022704)	ENSOMYG00000022666	nfe2 (ENSOMYG00000060671)	copz1 (ENSOMYG00000022566)	ENSOMYG00000058648	znf740b (ENSOMYG00000063586)	lima1a (ENSOMYG00000022505) #22	igfbp6 (ENSOMYG00000022473)	ENSOMYG00000022206	gpr182 (ENSOMYG00000022143)	ENSOMYG00000022137	agap2 (ENSOMYG00000021966)	ENSOMYG00000021829	ENSOMYG00000021820	ENSOMYG00000021811 #35	ENSOMYG00000021801 #34	ENSOMYG00000053283	ENSOMYG00000021784	ENSOMYG00000021741	ENSOMYG00000076239	ENSOMYG00000021709	tuba1b (ENSOMYG00000021718)
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00950000183025.b.b.e.a.a	ENSGT00940000161087.e.a	ENSGT00940000161307.q.b	ENSGT00940000160009.j.a	ENSGT00940000160855.g.b	ENSGT00940000160866.hb.a.b	ENSGT00940000159254.b.b.b	ENSGT00940000161023.b.b.d	ENSGT00940000160794.c.a.a	ENSGT00940000157315.ic.b	ENSGT00940000158801.f.a	ENSGT00940000165646.A.k.a	ENSGT00950000182892.a.a.a.d	ENSGT00390000004405.a.d.b	ENSGT00940000159609.n.b	ENSGT00940000158313.a.b.c #22	ENSGT00940000160528.b.d	ENSGT00940000156890.a.b.g	ENSGT00940000154307.D.i.b	ENSGT00940000160722.e	ENSGT00940000158956.c.h	ENSGT00940000158208.a.a.e	ENSGT01040000240451.a.b.a.b.b.b	ENSGT01050000244940.a.a.g.b.a #35	ENSGT00530000063607.a.m.a #34	ENSGT00940000159544.i	ENSGT00390000002944.d.b	ENSGT00950000183188.A.a.b.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.b	ENSGT00940000154457.a.a.a.b.a.a.b	ENSGT00940000159411.b.`c.a
Coho salmon	MODERN SPECIES	8	calcoco1a (ENSOKIG00005031783)	hoxc13a (ENSOKIG00005031774)	hoxc12a (ENSOKIG00005031758)	hoxc11a (ENSOKIG00005031738)	HOXC10 (ENSOKIG00005031727)	hoxc9a (ENSOKIG00005031699)	hoxc6a (ENSOKIG00005031680)	hoxc5a (ENSOKIG00005031672)	hoxc4a (ENSOKIG00005031667)	ENSOKIG00005031653	cbx5 (ENSOKIG00005031647)	ENSOKIG00005031639	nfe2 (ENSOKIG00005031636)	COPZ1 (ENSOKIG00005031606)	znf740b (ENSOKIG00005031596)	ENSOKIG00005031581 #22	ENSOKIG00005031575	ENSOKIG00005043023	gpr182 (ENSOKIG00005042975)	ENSOKIG00005042968	agap2 (ENSOKIG00005041804)	MARCHF9 (ENSOKIG00005041712)	ctdsp2 (ENSOKIG00005041686)	TMBIM6 (ENSOKIG00005041653) #35	ENSOKIG00005041627 #34	CCNT1 (ENSOKIG00005041583)	ENSOKIG00005041445	pmelb (ENSOKIG00005041373)	ENSOKIG00005041338	TUBA4B (ENSOKIG00005041249)	tuba1b (ENSOKIG00005041233)
Chinook salmon	MODERN SPECIES	7	tac3a (ENSOTSG00005010018)	ZNF385A (ENSOTSG00005010016)	fmnl3 (ENSOTSG00005009947) #37	ENSOTSG00005009942	ENSOTSG00005009940	rbms2b (ENSOTSG00005009939)	ENSOTSG00005009937	FAIM2 (ENSOTSG00005009928) #32	mfsd5 (ENSOTSG00005009925)	nr1d4a (ENSOTSG00005009924)	cbx5 (ENSOTSG00005009922)	ENSOTSG00005009921	nfe2 (ENSOTSG00005009920)	copz1 (ENSOTSG00005009918)	znf740b (ENSOTSG00005009917)	lima1a (ENSOTSG00005009916) #22	igfbp6b (ENSOTSG00005009915)	ENSOTSG00005009828	gpr182 (ENSOTSG00005009827)	ENSOTSG00005009826	agap2 (ENSOTSG00005005733)	ENSOTSG00005005721	ctdsp2 (ENSOTSG00005005719)	TMBIM6 (ENSOTSG00005005718) #35	ENSOTSG00005005717 #34	ccnt1 (ENSOTSG00005005716)	ccnt1 (ENSOTSG00005005714)	ENSOTSG00005005705	pmelb (ENSOTSG00005005702)	ENSOTSG00005005701	TUBA4B (ENSOTSG00005005700)
Salmo	ANCESTRAL SPECIES	16	ENSGT00940000161307.q.b	ENSGT00940000160009.j.a	ENSGT00940000160855.g.b	ENSGT00940000160866.hb.a.b	ENSGT00940000161194.p.a	ENSGT00940000159254.b.b.b	ENSGT00940000161023.b.b.d	ENSGT00940000160794.c.a.a	ENSGT00940000160794.c.b	ENSGT00940000157315.ic.b	ENSGT00940000158801.f.a	ENSGT00940000165646.A.k.a	ENSGT00950000182892.a.a.a.d	ENSGT00390000004405.a.d.b	ENSGT00940000159609.n.b	ENSGT00940000158313.a.b.c #22	ENSGT00940000160528.b.d	ENSGT00940000156890.a.b.g	ENSGT00940000154307.D.i.b	ENSGT00940000160722.e	ENSGT00940000158956.c.h	ENSGT00940000158208.a.a.e	ENSGT01040000240451.a.b.a.b.b.b	ENSGT01050000244940.a.a.g.b.a #35	ENSGT00530000063607.a.m.a #34	ENSGT00940000159544.i	ENSGT00390000002944.d.b	ENSGT00950000183188.A.a.b.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.a.b	ENSGT00950000183165.b.b.a.b	ENSGT00940000159411.b.`c.a
River trout	MODERN SPECIES	20	RARG (ENSSTUG00000033686)	calcoco1a (ENSSTUG00000033704)	hoxc13a (ENSSTUG00000033745)	hoxc12a (ENSSTUG00000033754)	hoxc11a (ENSSTUG00000033766)	hoxc10a (ENSSTUG00000033784)	hoxc6a (ENSSTUG00000033825)	hoxc5a (ENSSTUG00000033833)	hoxc4a (ENSSTUG00000033852)	ENSSTUG00000033878	cbx5 (ENSSTUG00000033900)	ENSSTUG00000033933	nfe2 (ENSSTUG00000033978)	copz1 (ENSSTUG00000023542)	znf740b (ENSSTUG00000023846)	lima1a (ENSSTUG00000023859) #22	igfbp6b (ENSSTUG00000023898)	ENSSTUG00000023931	gpr182 (ENSSTUG00000024266)	ENSSTUG00000024272	agap2 (ENSSTUG00000024314)	ENSSTUG00000025894	MARCHF9 (ENSSTUG00000025898)	ctdsp2 (ENSSTUG00000025911)	TMBIM6 (ENSSTUG00000025989) #35	ENSSTUG00000026015 #34	ENSSTUG00000026086	ccnt1 (ENSSTUG00000026107)	ENSSTUG00000026131	pmelb (ENSSTUG00000026225)	ENSSTUG00000026252
Atlantic salmon	MODERN SPECIES	6	calcoco1a (ENSSSAG00000085457)	hoxc13ab (ENSSSAG00000065802)	hoxc12a (ENSSSAG00000065800)	hoxc11a (ENSSSAG00000065795)	hoxc10ab (ENSSSAG00000065789)	hoxc9ab (ENSSSAG00000116370)	hoxc8a (ENSSSAG00000065782)	hoxc6ab (ENSSSAG00000065777)	hoxc5ab (ENSSSAG00000065769)	ENSSSAG00000081830	cbx5 (ENSSSAG00000110153)	ENSSSAG00000065715	nfe2 (ENSSSAG00000065710)	COPZ1 (ENSSSAG00000065658)	znf740b (ENSSSAG00000106694)	lima1a (ENSSSAG00000065643) #22	igfbp6 (ENSSSAG00000117627)	ENSSSAG00000064307	ENSSSAG00000094583	gp182 (ENSSSAG00000088534)	ENSSSAG00000099370	agap2 (ENSSSAG00000054532)	ENSSSAG00000087664	CTDS2 (ENSSSAG00000054381)	bi1 (ENSSSAG00000054369) #35	ENSSSAG00000113551	ENSSSAG00000054350 #34	ENSSSAG00000054343	HCC1 (ENSSSAG00000054310)	ENSSSAG00000054302	ENSSSAG00000082542
Huchen	MODERN SPECIES	2911										cbx5 (ENSHHUG00000039792)	ENSHHUG00000039771	nfe2 (ENSHHUG00000039765)	copz1 (ENSHHUG00000039580)	znf740b (ENSHHUG00000039567)	ENSHHUG00000039563	lima1a (ENSHHUG00000039560) #22
Salmoninae	ANCESTRAL SPECIES	195	ENSGT00940000161194.p	ENSGT00940000159254.b.b.a	ENSGT00940000161023.b.b.c	ENSGT00940000160794.c.a.b	ENSGT00940000168241	ENSGT00940000157315.ic.a	ENSGT00940000158801.e	ENSGT00940000165646.A.k.b	ENSGT00990000208196	ENSGT00940000158801.f.b	ENSGT00950000182892.a.a.a.c	ENSGT00390000004405.a.d.a	ENSGT00940000159609.n.a	ENSGT00940000158240.o.a.b	ENSGT00540000073797	ENSGT00940000158313.a.b.d #22	ENSGT00940000158675.a	ENSGT00940000160528.b.c	ENSGT00940000156890.a.b.h	ENSGT00940000154307.D.i.a	ENSGT00940000160722.f	ENSGT00940000158956.c.g	ENSGT00940000160351.e	ENSGT00940000158208.a.a.f	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a.b.b.a	ENSGT01050000244940.a.a.g.b.b #35	ENSGT00530000063607.a.m.b #34	ENSGT00940000155808	ENSGT00940000159544.j	ENSGT00390000002944.d.a
Salmoninae_a	ANCESTRAL SPECIES	14	ENSGT00940000160855.g.a	ENSGT00940000160866.hb.a.a	ENSGT00940000161194.p	ENSGT00940000168241	ENSGT00940000159254.b.b.a	ENSGT00940000161023.b.b.c	ENSGT00940000160794.c.a.b	ENSGT00940000157315.ic.a	ENSGT00940000158801.f.b	ENSGT00940000165646.A.k.b	ENSGT00950000182892.a.a.a.c	ENSGT00390000004405.a.d.a	ENSGT00940000159609.n.a	ENSGT00940000158240.o.a.b	ENSGT00540000073797	ENSGT00940000158313.a.b.d #22	ENSGT00940000158675.a	ENSGT00940000160528.b.c	ENSGT00940000156890.a.b.h	ENSGT00940000154307.D.i.a	ENSGT00940000160722.f	ENSGT00940000158956.c.g	ENSGT00940000160351.e	ENSGT00940000158208.a.a.f	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a.b.b.a	ENSGT01050000244940.a.a.g.b.b #35	ENSGT00530000063607.a.m.b #34	ENSGT00940000155808	ENSGT00940000159544.j	ENSGT00390000002944.d.a
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00940000160009.j.b	ENSGT00940000160855.g.a	ENSGT00940000160866.hb.a.a	ENSGT00940000161194.p	ENSGT00940000159254.b.b.a	ENSGT00940000161023.b.b.c	ENSGT00940000159522.v	ENSGT00940000160794.c.a.b	ENSGT00940000157315.ic.a	ENSGT00940000158801.f.b	ENSGT00940000165646.A.k.b	ENSGT00950000182892.a.a.a.c	ENSGT00390000004405.a.d.a	ENSGT00940000159609.n.a	ENSGT00540000073797	ENSGT00940000158313.a.b.d #22	ENSGT00940000158675.a	ENSGT00940000160528.b.c	ENSGT00940000156890.a.b.h	ENSGT00940000154307.D.i.a	ENSGT00940000160722.f	ENSGT00940000158956.c.g	ENSGT00940000160351.e	ENSGT00940000158208.a.a.f	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a.b.b.a	ENSGT01050000244940.a.a.g.b.b #35	ENSGT00530000063607.a.m.b #34	ENSGT00940000155808	ENSGT00940000159544.j	ENSGT00390000002944.d.a
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00940000160009.j.b	ENSGT00940000160855.g.a	ENSGT00940000160866.hb.a.a	ENSGT00940000161194.p	ENSGT00940000159254.b.b.a	ENSGT00940000161023.b.b.c	ENSGT00940000159522.v	ENSGT00940000160794.c.a.b	ENSGT00990000208196	ENSGT00940000158801.f.b	ENSGT00940000165646.A.k.b	ENSGT00950000182892.a.a.a.c	ENSGT00390000004405.a.d.a	ENSGT00940000159609.n.a	ENSGT00540000073797	ENSGT00940000158313.a.b.d #22	ENSGT00940000158675.a	ENSGT00940000160528.b.c	ENSGT00940000156890.a.b.h	ENSGT00940000154307.D.i.a	ENSGT00940000160722.f	ENSGT00940000158956.c.g	ENSGT00940000160351.e	ENSGT00940000158208.a.a.f	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a.b.b.a	ENSGT01050000244940.a.a.g.b.b #35	ENSGT00530000063607.a.m.b #34	ENSGT00940000155808	ENSGT00940000159544.j	ENSGT00390000002944.d.a
Coho salmon	MODERN SPECIES	16	hoxc11a (ENSOKIG00005011982)	hoxc10a (ENSOKIG00005012000)	hoxc9a (ENSOKIG00005012016)	hoxc8a (ENSOKIG00005012027)	hoxc6a (ENSOKIG00005012041)	hoxc5a (ENSOKIG00005012061)	ENSOKIG00005012048	hoxc4a (ENSOKIG00005012069)	ENSOKIG00005012076	cbx5 (ENSOKIG00005012086)	ENSOKIG00005012091	nfe2 (ENSOKIG00005012105)	copz1 (ENSOKIG00005012114)	znf740b (ENSOKIG00005012133)	zgc:174906 (ENSOKIG00005012139)	lima1a (ENSOKIG00005012147) #22	spryd3 (ENSOKIG00005012158)	igfbp6b (ENSOKIG00005012239)	ENSOKIG00005012272	gpr182 (ENSOKIG00005012327)	ZBTB39 (ENSOKIG00005012335)	agap2 (ENSOKIG00005012353)	tspan31 (ENSOKIG00005012433)	MARCHF9 (ENSOKIG00005012450)	SLC11A2 (ENSOKIG00005012522) #15	ctdsp2 (ENSOKIG00005013608)	TMBIM6 (ENSOKIG00005013643) #35	ENSOKIG00005013673 #34	kansl2 (ENSOKIG00005013700)	ccnt1 (ENSOKIG00005013743)	ccnt1 (ENSOKIG00005013752)
Chinook salmon	MODERN SPECIES	14	hoxc12a (ENSOTSG00005041141)	hoxc11a (ENSOTSG00005041142)	hoxc10a (ENSOTSG00005041143)	hoxc9a (ENSOTSG00005041145)	hoxc8a (ENSOTSG00005041146)	hoxc6a (ENSOTSG00005041149)	hoxc5a (ENSOTSG00005041152)	ENSOTSG00005041151	hoxc4a (ENSOTSG00005041154)	hnrnpa1a (ENSOTSG00005041156)	cbx5 (ENSOTSG00005041157)	nfe2 (ENSOTSG00005041158)	copz1 (ENSOTSG00005041162)	znf740b (ENSOTSG00005041167)	zgc:174906 (ENSOTSG00005041169)	lima1a (ENSOTSG00005041171) #22	spryd3 (ENSOTSG00005041173)	igfbp6b (ENSOTSG00005041184)	ENSOTSG00005041189	gpr182 (ENSOTSG00005041209)	ZBTB39 (ENSOTSG00005041210)	agap2 (ENSOTSG00005041211)	tspan31 (ENSOTSG00005041212)	ENSOTSG00005041219	SLC11A2 (ENSOTSG00005041225) #15	ctdsp2 (ENSOTSG00005042817)	TMBIM6 (ENSOTSG00005042819) #35	ENSOTSG00005042820 #34	kansl2 (ENSOTSG00005042821)	ccnt1 (ENSOTSG00005042822)	ccnt1 (ENSOTSG00005042823)
Rainbow trout	MODERN SPECIES	7	HOXC10 (ENSOMYG00000026945)	hoxc9a (ENSOMYG00000022800)	hoxc8a (ENSOMYG00000063789)	hoxc6a (ENSOMYG00000027005)	hoxc5a (ENSOMYG00000027014)	ENSOMYG00000026972	hoxc4a (ENSOMYG00000027038)	ENSOMYG00000027047	cbx5 (ENSOMYG00000027071)	ENSOMYG00000027114	nfe2 (ENSOMYG00000027129)	ENSOMYG00000067248	copz1 (ENSOMYG00000027170)	znf740b (ENSOMYG00000027225)	zgc:174906 (ENSOMYG00000027237)	lima1a (ENSOMYG00000027258) #22	spryd3 (ENSOMYG00000027298)	igfbp6b (ENSOMYG00000027375)	ENSOMYG00000027613	gpr182 (ENSOMYG00000028600)	ENSOMYG00000028608	agap2 (ENSOMYG00000028725)	tspan31 (ENSOMYG00000028828)	MARCHF9 (ENSOMYG00000075892)	ENSOMYG00000028951 #15	ctdsp2 (ENSOMYG00000029051)	ENSOMYG00000029153 #35	ENSOMYG00000029234 #34	kansl2 (ENSOMYG00000029305)	ENSOMYG00000029319	ENSOMYG00000029334
Salmo	ANCESTRAL SPECIES	4	ENSGT00940000160855.g.a	ENSGT00940000160866.hb.a.a	ENSGT00940000161194.p.b	ENSGT00940000168241	ENSGT00940000159254.b.b.a	ENSGT00940000161023.b.b.c	ENSGT00940000160794.c.a.b	ENSGT00990000208196	ENSGT00940000158801.f.b	ENSGT00940000165646.A.k.b	ENSGT00950000182892.a.a.a.c	ENSGT00390000004405.a.d.a	ENSGT00940000159609.n.a	ENSGT00940000158240.o.a.b	ENSGT00540000073797	ENSGT00940000158313.a.b.d #22	ENSGT00940000158675.a	ENSGT00940000160528.b.c	ENSGT00940000156890.a.b.h	ENSGT00940000154307.D.i.a	ENSGT00940000160722.f	ENSGT00940000158956.c.g	ENSGT00940000160351.e	ENSGT00940000158208.a.a.f	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a.b.b.a	ENSGT01050000244940.a.a.g.b.b #35	ENSGT00530000063607.a.m.b #34	ENSGT00940000155808	ENSGT00940000159544.j	ENSGT00390000002944.d.a
Atlantic salmon	MODERN SPECIES	4	hoxc12aa (ENSSSAG00000077464)	hoxc11a (ENSSSAG00000077471)	hoxc10aa (ENSSSAG00000077476)	hoxc9aa (ENSSSAG00000077481)	hoxc8aa (ENSSSAG00000077484)	hoxc4aa (ENSSSAG00000077504)	ENSSSAG00000100048	ENSSSAG00000116092	cbx5 (ENSSSAG00000096644)	roa1 (ENSSSAG00000112459)	nfe2 (ENSSSAG00000106810)	copz1 (ENSSSAG00000077523)	znf740b (ENSSSAG00000107235)	csad (ENSSSAG00000077542)	zgc:174906 (ENSSSAG00000094777)	lima1a (ENSSSAG00000077585) #22	spryd3 (ENSSSAG00000077591)	igfbp6b (ENSSSAG00000077620)	ENSSSAG00000077647	GP182 (ENSSSAG00000077688)	ENSSSAG00000077691	agap2 (ENSSSAG00000077704)	tspan31 (ENSSSAG00000077771)	MARCHF9 (ENSSSAG00000113552)	ENSSSAG00000077818 #15	ctdsp2 (ENSSSAG00000078630)	ENSSSAG00000078643 #35	ENSSSAG00000078647 #34	kansl2 (ENSSSAG00000038942)	ENSSSAG00000039235	ENSSSAG00000039352
River trout	MODERN SPECIES	23	hoxc10a (ENSSTUG00000049005)	hoxc9a (ENSSTUG00000049014)	hoxc8a (ENSSTUG00000049016)	ENSSTUG00000049018	hoxc6a (ENSSTUG00000049021)	hoxc5a (ENSSTUG00000049023)	hoxc4a (ENSSTUG00000049025)	ENSSTUG00000049027	cbx5 (ENSSTUG00000049029)	hnrnpa1a (ENSSTUG00000049035)	nfe2 (ENSSTUG00000049046)	copz1 (ENSSTUG00000049050)	znf740b (ENSSTUG00000049073)	csad (ENSSTUG00000049081)	zgc:174906 (ENSSTUG00000049118)	lima1a (ENSSTUG00000049128) #22	spryd3 (ENSSTUG00000049139)	igfbp6b (ENSSTUG00000049149)	ENSSTUG00000049178	gpr182 (ENSSTUG00000049325)	ZBTB39 (ENSSTUG00000049329)	agap2 (ENSSTUG00000049338)	tspan31 (ENSSTUG00000049359)	MARCHF9 (ENSSTUG00000049369)	SLC11A2 (ENSSTUG00000003441) #15	ctdsp2 (ENSSTUG00000004233)	TMBIM6 (ENSSTUG00000004275) #35	ENSSTUG00000004316 #34	kansl2 (ENSSTUG00000004367)	ccnt1 (ENSSTUG00000004416)	ccnt1 (ENSSTUG00000004423)
Huchen	MODERN SPECIES	861	hoxc10a (ENSHHUG00000002948)	hoxc9a (ENSHHUG00000002921)	hoxc8a (ENSHHUG00000002876)	hoxc6a (ENSHHUG00000002845)	hoxc5a (ENSHHUG00000002828)	hoxc4a (ENSHHUG00000002789)	ENSHHUG00000002784	ENSHHUG00000002753	CBX5 (ENSHHUG00000002675)	hnrnpa1a (ENSHHUG00000002656)	nfe2 (ENSHHUG00000002648)	copz1 (ENSHHUG00000002479)	znf740b (ENSHHUG00000002475)	csad (ENSHHUG00000002407)	zgc:174906 (ENSHHUG00000002393)	lima1a (ENSHHUG00000002367) #22	spryd3 (ENSHHUG00000002360)	igfbp6b (ENSHHUG00000002345)	ENSHHUG00000002342
Northern pike	MODERN SPECIES	11	hoxc10a (ENSELUG00000007508)	hoxc9a (ENSELUG00000007497)	hoxc8a (ENSELUG00000007488)	hoxc4a (ENSELUG00000007470)	hoxc6a (ENSELUG00000000266)	hoxc5a (ENSELUG00000007442)	ENSELUG00000029411	ENSELUG00000007432	cbx5 (ENSELUG00000007406)	hnrnpa1a (ENSELUG00000007372)	nfe2 (ENSELUG00000007322)	copz1 (ENSELUG00000007301)	znf740b (ENSELUG00000007241)	zgc:174906 (ENSELUG00000007228)	ENSELUG00000027598	ENSELUG00000007219 #22	spryd3 (ENSELUG00000007201)	igfbp6b (ENSELUG00000007168)	ENSELUG00000007155	gpr182 (ENSELUG00000007136)	ZBTB39 (ENSELUG00000007121)	agap2 (ENSELUG00000007107)	tspan31 (ENSELUG00000007060)	ENSELUG00000007038	SLC11A2 (ENSELUG00000007018) #15	TMBIM6 (ENSELUG00000006973) #35	ENSELUG00000006909 #34	kansl2 (ENSELUG00000000222)	ccnt1 (ENSELUG00000006830)	ccnt1 (ENSELUG00000006814)	ENSELUG00000006786
Acanthomorphata	ANCESTRAL SPECIES	3	ENSGT00940000153588.b.f	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.b	ENSGT00940000156650.j	ENSGT00390000018621	ENSGT00940000167069	ENSGT00940000164454	ENSGT00950000182835.c.c.g.a	ENSGT00940000157506.f	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Cod	MODERN SPECIES		ENSGMOG00000034972	ENSGMOG00000006036	ENSGMOG00000032128	ENSGMOG00000035031	ENSGMOG00000018838	ENSGMOG00000018829	ENSGMOG00000018856	ENSGMOG00000018869	ENSGMOG00000018875	ENSGMOG00000018938	ENSGMOG00000035532	ENSGMOG00000010072	ENSGMOG00000010083	ENSGMOG00000004062	ENSGMOG00000017379	lima1a (ENSGMOG00000028037) #22	spryd3 (ENSGMOG00000031751)	igfbp6b (ENSGMOG00000018545)	ENSGMOG00000011567	gpr182 (ENSGMOG00000036755)	ENSGMOG00000033443	agap2 (ENSGMOG00000011545)	tspan31 (ENSGMOG00000022298)	MARCHF9 (ENSGMOG00000011529)	ENSGMOG00000030863	ENSGMOG00000036947	ENSGMOG00000011514 #15	ctdsp2 (ENSGMOG00000011507)	ENSGMOG00000011496 #35	ENSGMOG00000034634 #34	ENSGMOG00000030202
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.b	ENSGT00940000154285.a.a.c.b.b.b	ENSGT00940000156650.j	ENSGT00390000018621	ENSGT00940000167069	ENSGT00940000164454	ENSGT00950000182835.c.c.g.a	ENSGT00940000157506.f	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Pinecone sodierfish	MODERN SPECIES	21	DNASE1L1 (ENSMMDG00005014710)	ENSMMDG00005014603	atp6ap1a (ENSMMDG00005014585)	tafazzin (ENSMMDG00005014577)	ENSMMDG00005014556	ndnl2 (ENSMMDG00005014545)	ENSMMDG00005014540	ENSMMDG00005014240	ENSMMDG00005014222	ENSMMDG00005014109	hsd17b10 (ENSMMDG00005014103)	FAM120C (ENSMMDG00005013813)	IDH3G (ENSMMDG00005013805)	AVPR2 (ENSMMDG00005013804)	slc16a1b (ENSMMDG00005013787)	lima1a (ENSMMDG00005013784) #22	spryd3 (ENSMMDG00005013774)	igfbp6b (ENSMMDG00005013772)	ENSMMDG00005013602	gpr182 (ENSMMDG00005013593)	ZBTB39 (ENSMMDG00005013592)	agap2 (ENSMMDG00005013582)	tspan31 (ENSMMDG00005013579)	MARCHF9 (ENSMMDG00005013577)	SLC11A2 (ENSMMDG00005013514) #15	ctdsp2 (ENSMMDG00005013509)	TMBIM6 (ENSMMDG00005013505) #35	ENSMMDG00005013503 #34	kansl2 (ENSMMDG00005013500)	ccnt1 (ENSMMDG00005013497)	sarnp (ENSMMDG00005013493)
Percomorphaceae	ANCESTRAL SPECIES	7										ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT00990000208548	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Oryzias	ANCESTRAL SPECIES	39	ENSGT00940000160391	ENSGT00940000159974	ENSGT00390000016036	ENSGT00390000003365.a	ENSGT01050000245029.b	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01100000263788	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Oryzias_b	ANCESTRAL SPECIES	46	ENSGT00940000160391	ENSGT00940000159974	ENSGT00390000016036	ENSGT00390000003365.a	ENSGT01050000245029.b	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01100000263788	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Javanese ricefish	MODERN SPECIES	21	ENSOJAG00000013820	igfbp6b (ENSOJAG00000013754)	spryd3 (ENSOJAG00000013580)	ENSOJAG00000013563	ENSOJAG00000013558	xkr7b (ENSOJAG00000013539)	CCM2L (ENSOJAG00000013532)	ENSOJAG00000013524	ENSOJAG00000013508	ENSOJAG00000013494	hsd17b10 (ENSOJAG00000013445)	FAM120C (ENSOJAG00000013191)	IDH3G (ENSOJAG00000013117)	AVPR2 (ENSOJAG00000013097)	ENSOJAG00000013044	lima1a (ENSOJAG00000013030) #22	PM20D2 (ENSOJAG00000012966)	IQSEC2 (ENSOJAG00000012783)	zgc:86609 (ENSOJAG00000012758)	USP11 (ENSOJAG00000012415)	rfc2 (ENSOJAG00000012347)	ENSOJAG00000011723	ENSOJAG00000011689	RNF223 (ENSOJAG00000011663)	ENSOJAG00000011624	ENSOJAG00000011609	CLCN6 (ENSOJAG00000011581)	ENSOJAG00000011549	rps21 (ENSOJAG00000011535)	cry3a (ENSOJAG00000011418)	RAB29 (ENSOJAG00000011387)
Indian medaka	MODERN SPECIES	23	rgs19 (ENSOMEG00000013532)	tcea2 (ENSOMEG00000000868)	cfap206 (ENSOMEG00000013628)	PM20D2 (ENSOMEG00000013673)	ENSOMEG00000013686	xkr7b (ENSOMEG00000013697)	CCM2L (ENSOMEG00000013795)	CABLES2 (ENSOMEG00000013846)	ENSOMEG00000013866	ENSOMEG00000013886	hsd17b10 (ENSOMEG00000013918)	FAM120C (ENSOMEG00000013980)	IDH3G (ENSOMEG00000014007)	AVPR2 (ENSOMEG00000014043)	ENSOMEG00000014059	lima1a (ENSOMEG00000014102) #22	spryd3 (ENSOMEG00000014154)	igfbp6b (ENSOMEG00000014169)	ENSOMEG00000014212	gpr182 (ENSOMEG00000014220)	ZBTB39 (ENSOMEG00000014229)	agap2 (ENSOMEG00000014370)	tspan31 (ENSOMEG00000014426)	MARCHF9 (ENSOMEG00000014448)	ENSOMEG00000014487 #15	ctdsp2 (ENSOMEG00000014516)	TMBIM6 (ENSOMEG00000014530) #35	ENSOMEG00000014574 #34	kansl2 (ENSOMEG00000014635)	ccnt1 (ENSOMEG00000014665)	sarnp (ENSOMEG00000014699)
Oryzias_a	ANCESTRAL SPECIES		ENSGT00940000160391	ENSGT00940000159974	ENSGT00390000016036.c	ENSGT00390000003365.a	ENSGT01050000245029.b	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01100000263788	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Chinese medaka	MODERN SPECIES	338												FAM120C (ENSOSIG00000016352)	IDH3G (ENSOSIG00000016244)	AVPR2 (ENSOSIG00000016240)	SLC16A1 (ENSOSIG00000016239)	lima1a (ENSOSIG00000016238) #22	spryd3 (ENSOSIG00000016236)	igfbp6b (ENSOSIG00000016235)	ENSOSIG00000015595	gpr182 (ENSOSIG00000015591)	ZBTB39 (ENSOSIG00000015590)	agap2 (ENSOSIG00000015530)	tspan31 (ENSOSIG00000015471)	MARCHF9 (ENSOSIG00000015465)	SLC11A2 (ENSOSIG00000011938) #15	ctdsp2 (ENSOSIG00000011887)	TMBIM6 (ENSOSIG00000011886) #35	ENSOSIG00000011885 #34	kansl2 (ENSOSIG00000011881)	ENSOSIG00000011877	ENSOSIG00000011874
Japanese Medaka HdrR	DUPLICATION
Japanese Medaka HdrR	MODERN SPECIES	21	ENSORLG00000029924	ENSORLG00000022890	ENSORLG00000016726	ENSORLG00000026030	ENSORLG00000028253	ENSORLG00000025535	ENSORLG00000028539	ENSORLG00000024721	ENSORLG00000028641	ENSORLG00000024191	hsd17b10 (ENSORLG00000023179)	FAM120C (ENSORLG00000016706)	ENSORLG00000016697	AVPR2 (ENSORLG00000016671)	ENSORLG00000016667	lima1a (ENSORLG00000016655) #22	spryd3 (ENSORLG00000016645)	igfbp6b (ENSORLG00000025346)	ENSORLG00000016631	gpr182 (ENSORLG00000016607)	ZBTB39 (ENSORLG00000021882)	agap2 (ENSORLG00000022870)	tspan31 (ENSORLG00000016592)	ENSORLG00000024942	MARCHF9 (ENSORLG00000016582)	ENSORLG00000016579 #15	ctdsp2 (ENSORLG00000016558)	TMBIM6 (ENSORLG00000016540) #35	ENSORLG00000016534 #34	kansl2 (ENSORLG00000016524)	ccnt1 (ENSORLG00000016497)
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000003208	ENSORLG00000003225	ENSORLG00000003254	ENSORLG00000003276	ENSORLG00000022896	JAGN1 (ENSORLG00000003292)	gca (ENSORLG00000003319)	ENSORLG00000003353	ENSORLG00000003424	ENSORLG00000026351	scn1lab (ENSORLG00000003411)	ENSORLG00000023301	ENSORLG00000028702 ##13	ENSORLG00000024386	ENSORLG00000003433	ENSORLG00000026955 #22	ENSORLG00000003440	ENSORLG00000003454	ENSORLG00000003479	ENSORLG00000003489	atp5f1b (ENSORLG00000003517)	ENSORLG00000025630	ENSORLG00000003547	oxgr1a.2 (ENSORLG00000003552)	ENSORLG00000003563	dzip1 (ENSORLG00000003586)	ENSORLG00000003599	ENSORLG00000003608	abcc4 (ENSORLG00000021976)	ENSORLG00000003652	ENSORLG00000024538
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00940000161936	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT00990000208548	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Aplocheiloidei	ANCESTRAL SPECIES	229															ENSGT01000000222029	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a
Turquoise killifish	MODERN SPECIES	1624	bin2a (ENSNFUG00015014536)	OLA.5441 (ENSNFUG00015014587)	racgap1 (ENSNFUG00015014612) #28	Nfu_g_1_001902 (ENSNFUG00015014861)	CS (ENSNFUG00015015122)	COQ10A (ENSNFUG00015015530)	ANKRD52A (ENSNFUG00015015891)	RNF41 (ENSNFUG00015017333)	DGKAA (ENSNFUG00015017456)	tamalin (ENSNFUG00015019801)	NR4A1 (ENSNFUG00015019814)	GTSF1 (ENSNFUG00015019816)	LETMD1 (ENSNFUG00015019818) #14	CD63 (ENSNFUG00015019836)	ENSNFUG00015019843	lima1a (ENSNFUG00015019847) #22	spryd3 (ENSNFUG00015019856)	IGFBP6B (ENSNFUG00015019861)	ENSNFUG00015019874	ANKS1A (ENSNFUG00015019927)	SLC16A1 (ENSNFUG00015019993)	AVPR2 (ENSNFUG00015020000)	FAM120C (ENSNFUG00015020036)	hsd17b10 (ENSNFUG00015020276)	SARNP (ENSNFUG00015020286)	ENSNFUG00015020293	TUBA1C (ENSNFUG00015020301)	ENSNFUG00015020306	HNF4A (ENSNFUG00015020322)	TTPAL (ENSNFUG00015020575)	ENSNFUG00015020581
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00940000160207.b	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT00940000155407	ENSGT00940000157965.d	ENSGT00530000063693.b	ENSGT00940000160178	ENSGT00940000159411.b	ENSGT00400000022086.b.a.a	ENSGT00990000208548	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
NAME_4	ANCESTRAL SPECIES	196											ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Mummichog	MODERN SPECIES	299													hsd17b10 (ENSFHEG00000010893)	FAM120C (ENSFHEG00000010904)	ENSFHEG00000010943	lima1a (ENSFHEG00000010966) #22	igfbp6b (ENSFHEG00000010983)	spryd3 (ENSFHEG00000011003)	igfbp6b (ENSFHEG00000011034)	ENSFHEG00000011058	gpr182 (ENSFHEG00000011063)	ZBTB39 (ENSFHEG00000011080)	agap2 (ENSFHEG00000011241)	tspan31 (ENSFHEG00000011292)	MARCHF9 (ENSFHEG00000011312)	ENSFHEG00000012010 #15	ctdsp2 (ENSFHEG00000012043)	TMBIM6 (ENSFHEG00000012068) #35	ENSFHEG00000012110 #34	kansl2 (ENSFHEG00000012119)	ccnt1 (ENSFHEG00000012179)
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	340	nr4a1 (ENSCVAG00000009953)	zgc:56699 (ENSCVAG00000009972)	letmd1 (ENSCVAG00000009979) #14	cd63 (ENSCVAG00000009996)	nemp1 (ENSCVAG00000010008)	ormdl2 (ENSCVAG00000010022)	ENSCVAG00000010033	PAN2 (ENSCVAG00000010197)	ENSCVAG00000010208	ENSCVAG00000010209	hsd17b10 (ENSCVAG00000010226)	FAM120C (ENSCVAG00000010237)	AVPR2 (ENSCVAG00000010460)	slc16a1b (ENSCVAG00000010510)	ENSCVAG00000010525 #22	lima1a (ENSCVAG00000010527) #22	spryd3 (ENSCVAG00000010551)	igfbp6b (ENSCVAG00000010555)	ENSCVAG00000010587	gpr182 (ENSCVAG00000010592)	ENSCVAG00000010598	agap2 (ENSCVAG00000010659)	tspan31 (ENSCVAG00000010669)	ENSCVAG00000010689	SLC11A2 (ENSCVAG00000010730) #15	ctdsp2 (ENSCVAG00000010740)	TMBIM6 (ENSCVAG00000010770) #35	ENSCVAG00000010791 #34	kansl2 (ENSCVAG00000010812)	ccnt1 (ENSCVAG00000010905)	sarnp (ENSCVAG00000010924)
Sheepshead minnow	MODERN SPECIES	340	tamalin (ENSCVAG00000009941)	nr4a1 (ENSCVAG00000009953)	zgc:56699 (ENSCVAG00000009972)	letmd1 (ENSCVAG00000009979) #14	cd63 (ENSCVAG00000009996)	nemp1 (ENSCVAG00000010008)	ormdl2 (ENSCVAG00000010022)	ENSCVAG00000010033	PAN2 (ENSCVAG00000010197)	ENSCVAG00000010208	ENSCVAG00000010209	hsd17b10 (ENSCVAG00000010226)	FAM120C (ENSCVAG00000010237)	AVPR2 (ENSCVAG00000010460)	slc16a1b (ENSCVAG00000010510)	ENSCVAG00000010525 #22	lima1a (ENSCVAG00000010527) #22	spryd3 (ENSCVAG00000010551)	igfbp6b (ENSCVAG00000010555)	ENSCVAG00000010587	gpr182 (ENSCVAG00000010592)	ENSCVAG00000010598	agap2 (ENSCVAG00000010659)	tspan31 (ENSCVAG00000010669)	ENSCVAG00000010689	SLC11A2 (ENSCVAG00000010730) #15	ctdsp2 (ENSCVAG00000010740)	TMBIM6 (ENSCVAG00000010770) #35	ENSCVAG00000010791 #34	kansl2 (ENSCVAG00000010812)	ccnt1 (ENSCVAG00000010905)
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT00940000155407	ENSGT00940000157965.d	ENSGT00530000063693.b	ENSGT00940000160178	ENSGT00940000159411.b	ENSGT00400000022086.b.a.a	ENSGT01070000254036.b.b	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Platyfish	MODERN SPECIES		GDAP1L1 (ENSXMAG00000001199)	jph2 (ENSXMAG00000001194)	CABLES2 (ENSXMAG00000001180)	ENSXMAG00000023415	ENSXMAG00000025170	ENSXMAG00000023891	ENSXMAG00000026187	ENSXMAG00000009572	ENSXMAG00000021389	hsd17b10 (ENSXMAG00000022397)	ENSXMAG00000026631	hsd17b10 (ENSXMAG00000009565)	FAM120C (ENSXMAG00000009559)	AVPR2 (ENSXMAG00000009554)	slc16a1b (ENSXMAG00000009538)	lima1a (ENSXMAG00000009536) #22	spryd3 (ENSXMAG00000009531)	igfbp6b (ENSXMAG00000009527)	ENSXMAG00000009508	gpr182 (ENSXMAG00000019535)	ZBTB39 (ENSXMAG00000028483)	agap2 (ENSXMAG00000009472)	tspan31 (ENSXMAG00000009442)	ENSXMAG00000025464	ENSXMAG00000027019	ENSXMAG00000009434	SLC11A2 (ENSXMAG00000009400) #15	ctdsp2 (ENSXMAG00000023302)	TMBIM6 (ENSXMAG00000009377) #35	ENSXMAG00000009373 #34	kansl2 (ENSXMAG00000009365)
Poecilia	ANCESTRAL SPECIES	14	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT00940000155407	ENSGT00940000157965.d	ENSGT00530000063693.b	ENSGT00940000160178	ENSGT00940000159411.b	ENSGT00400000022086.b.a.a	ENSGT01070000254036.b.b	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
NAME_6	ANCESTRAL SPECIES	127																ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Amazon molly	MODERN SPECIES	885																lima1a (ENSPFOG00000019587) #22	spryd3 (ENSPFOG00000019588)	igfbp6b (ENSPFOG00000019589)	ENSPFOG00000019590	gpr182 (ENSPFOG00000020577)	ZBTB39 (ENSPFOG00000019591)	agap2 (ENSPFOG00000019592)	tspan31 (ENSPFOG00000019593)	ENSPFOG00000024828	ENSPFOG00000019594
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	1208										ENSPLAG00000021217	ENSPLAG00000021202	hsd17b10 (ENSPLAG00000021195)	FAM120C (ENSPLAG00000021162)	AVPR2 (ENSPLAG00000021150)	slc16a1b (ENSPLAG00000021009)	ENSPLAG00000020986 #22
Sailfin molly	MODERN SPECIES	2768																ENSPLAG00000010204 #22	SPRYD3 (ENSPLAG00000010251)	ENSPLAG00000010268	ENSPLAG00000010295	ENSPLAG00000010434
Sailfin molly	MODERN SPECIES	1572																ENSPLAG00000003756 #22	spryd3 (ENSPLAG00000000065)	igfbp6b (ENSPLAG00000003716)	ENSPLAG00000003681	gpr182 (ENSPLAG00000003660)	ZBTB39 (ENSPLAG00000003654)	agap2 (ENSPLAG00000003643)
Guppy	DUPLICATION
Guppy	MODERN SPECIES	459	ada (ENSPREG00000020675)	pkig (ENSPREG00000020666)	ttpal (ENSPREG00000020647)	hnf4a (ENSPREG00000020625)	fitm2 (ENSPREG00000020601)	GDAP1L1 (ENSPREG00000020587)	jph2 (ENSPREG00000020578)	CABLES2 (ENSPREG00000020554)	ENSPREG00000020535	ENSPREG00000020527	ENSPREG00000020517	hsd17b10 (ENSPREG00000020507)	FAM120C (ENSPREG00000020487)	AVPR2 (ENSPREG00000020474)	slc16a1b (ENSPREG00000020446)	lima1a (ENSPREG00000020431) #22	spryd3 (ENSPREG00000020419)	igfbp6b (ENSPREG00000020376)	ENSPREG00000020354	gpr182 (ENSPREG00000020348)	ZBTB39 (ENSPREG00000020310)	agap2 (ENSPREG00000020238)	tspan31 (ENSPREG00000020212)	ENSPREG00000020197	ENSPREG00000020188	SLC11A2 (ENSPREG00000019914) #15	ctdsp2 (ENSPREG00000019835)	TMBIM6 (ENSPREG00000019803) #35	ENSPREG00000019736 #34	kansl2 (ENSPREG00000019647)	ccnt1 (ENSPREG00000019617)
Guppy	MODERN SPECIES	457	ENSPREG00000015347	ENSPREG00000015328	zc3h10 (ENSPREG00000015323)	ESYT1 (ENSPREG00000015274)	ENSPREG00000015250	ENSPREG00000015237	ENSPREG00000015221	ENSPREG00000015217	LRP1 (ENSPREG00000015074)	RBMS2 (ENSPREG00000015038)	ENSPREG00000015003 #32	nr1d4b (ENSPREG00000014985)	rargb (ENSPREG00000014967)	ENSPREG00000014951	ENSPREG00000014858	ENSPREG00000014832 #22	SPRYD3 (ENSPREG00000014809)	igfbp6a (ENSPREG00000014795)	PIP4K2C (ENSPREG00000014765)	AGAP2 (ENSPREG00000014752)	cdk4 (ENSPREG00000014735)	ENSPREG00000014732	ENSPREG00000014649	mettl1 (ENSPREG00000014602)	cyp27b1 (ENSPREG00000014582)	mcrs1 (ENSPREG00000014555)	suox (ENSPREG00000014543)	MMP19 (ENSPREG00000014520)	ENSPREG00000014511	timeless (ENSPREG00000014444)	prph (ENSPREG00000014389)
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Pomacentridae	ANCESTRAL SPECIES	91																ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c.k.a	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Bicolor damselfish	MODERN SPECIES	1145																lima1a (ENSSPAG00000004879) #22	spryd3 (ENSSPAG00000004906)	igfbp6b (ENSSPAG00000004927)	ENSSPAG00000004940	gpr182 (ENSSPAG00000004995)	ENSSPAG00000005000	agap2 (ENSSPAG00000005012)	tspan31 (ENSSPAG00000005062)	MARCHF9 (ENSSPAG00000005090)	SLC11A2 (ENSSPAG00000005107) #15	ctdsp2 (ENSSPAG00000005137)	TMBIM6 (ENSSPAG00000005164) #35
Pomacentridae_A	ANCESTRAL SPECIES	90																ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c.k.a	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Amphiprion	ANCESTRAL SPECIES	75														ENSGT00950000183126.a.p.a.q.a	ENSGT00950000183126.a.p.a.q.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c.k.a	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Orange clownfish	MODERN SPECIES	22	arih2 (ENSAPEG00000015440)	ENSAPEG00000015494	xpc (ENSAPEG00000015503)	si:dkey-72l14.3 (ENSAPEG00000015532)	borcs6 (ENSAPEG00000015544)	ENSAPEG00000015560	sema3h (ENSAPEG00000015575)	ENSAPEG00000015619	tmem115 (ENSAPEG00000015629)	ENSAPEG00000015637	BSN (ENSAPEG00000015660)	osbpl2b (ENSAPEG00000015765)	ENSAPEG00000015819	ENSAPEG00000015918	ENSAPEG00000015936	lima1a (ENSAPEG00000015952) #22	spryd3 (ENSAPEG00000015977)	igfbp6b (ENSAPEG00000016029)	ENSAPEG00000016063	gpr182 (ENSAPEG00000016114)	ENSAPEG00000016120	agap2 (ENSAPEG00000016168)	tspan31 (ENSAPEG00000016316)	MARCHF9 (ENSAPEG00000016342)	SLC11A2 (ENSAPEG00000016358) #15	ctdsp2 (ENSAPEG00000016417)	TMBIM6 (ENSAPEG00000016442) #35	ENSAPEG00000016486 #34	kansl2 (ENSAPEG00000016543)	ccnt1 (ENSAPEG00000016595)	sarnp (ENSAPEG00000016710)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	1961															ENSAOCG00000007054	ENSAOCG00000006996 #22
Clown anemonefish	MODERN SPECIES	3451															slc8a2b (ENSAOCG00000005796)	ENSAOCG00000005745 #22	spryd3 (ENSAOCG00000005724)	igfbp6b (ENSAOCG00000005690)	ENSAOCG00000005682	gpr182 (ENSAOCG00000005664)
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	2354															ENSAPOG00000010826 #22	lima1a (ENSAPOG00000010800) #22
Spiny chromis	MODERN SPECIES	2354																ENSAPOG00000010826 #22	lima1a (ENSAPOG00000010800) #22
Cichlidae	ANCESTRAL SPECIES		ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	520		ENSACIG00000004337	tor1 (ENSACIG00000004353)	tor1 (ENSACIG00000004417)	ENSACIG00000004471	ENSACIG00000004478	ENSACIG00000004495	ENSACIG00000004502	ENSACIG00000004504	hsd17b10 (ENSACIG00000004513)	FAM120C (ENSACIG00000004531)	IDH3G (ENSACIG00000004594)	AVPR2 (ENSACIG00000004629)	slc16a1b (ENSACIG00000004707)	ENSACIG00000004791 #22	ENSACIG00000004806 #22	spryd3 (ENSACIG00000004816)	igfbp6b (ENSACIG00000004841)	ENSACIG00000004852	gpr182 (ENSACIG00000004879)	ZBTB39 (ENSACIG00000004886)	agap2 (ENSACIG00000004908)	tspan31 (ENSACIG00000004979)	MARCHF9 (ENSACIG00000004994)	SLC11A2 (ENSACIG00000005004) #15	ctdsp2 (ENSACIG00000005024)	TMBIM6 (ENSACIG00000005042) #35	ENSACIG00000005067 #34	kansl2 (ENSACIG00000005095)	ccnt1 (ENSACIG00000005132)	ENSACIG00000005191
Midas cichlid	MODERN SPECIES	520			ENSACIG00000004337	tor1 (ENSACIG00000004353)	tor1 (ENSACIG00000004417)	ENSACIG00000004471	ENSACIG00000004478	ENSACIG00000004495	ENSACIG00000004502	ENSACIG00000004504	hsd17b10 (ENSACIG00000004513)	FAM120C (ENSACIG00000004531)	IDH3G (ENSACIG00000004594)	AVPR2 (ENSACIG00000004629)	slc16a1b (ENSACIG00000004707)	ENSACIG00000004791 #22	ENSACIG00000004806 #22	spryd3 (ENSACIG00000004816)	igfbp6b (ENSACIG00000004841)	ENSACIG00000004852	gpr182 (ENSACIG00000004879)	ZBTB39 (ENSACIG00000004886)	agap2 (ENSACIG00000004908)	tspan31 (ENSACIG00000004979)	MARCHF9 (ENSACIG00000004994)	SLC11A2 (ENSACIG00000005004) #15	ctdsp2 (ENSACIG00000005024)	TMBIM6 (ENSACIG00000005042) #35	ENSACIG00000005067 #34	kansl2 (ENSACIG00000005095)	ccnt1 (ENSACIG00000005132)
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00940000154285.a.a.c.a.e.a	ENSGT01030000234941.d	ENSGT00950000182888.a.a.a.f	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a.f.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Nile tilapia	MODERN SPECIES	12	ENSONIG00000014581	ENSONIG00000004087	ENSONIG00000033251	ENSONIG00000034031	ENSONIG00000031199	ENSONIG00000027297	ENSONIG00000040127	ENSONIG00000016583	ENSONIG00000039737	ENSONIG00000038119	hsd17b10 (ENSONIG00000027180)	FAM120C (ENSONIG00000016575)	IDH3G (ENSONIG00000016573)	AVPR2 (ENSONIG00000016572)	slc16a1b (ENSONIG00000016569)	lima1a (ENSONIG00000016565) #22	spryd3 (ENSONIG00000016562)	igfbp6b (ENSONIG00000016561)	ENSONIG00000041197	gpr182 (ENSONIG00000021130)	ZBTB39 (ENSONIG00000035885)	agap2 (ENSONIG00000016553)	tspan31 (ENSONIG00000016549)	MARCHF9 (ENSONIG00000016548)	ENSONIG00000016538 #15	ctdsp2 (ENSONIG00000042480)	TMBIM6 (ENSONIG00000016532) #35	ENSONIG00000036864	kansl2 (ENSONIG00000016529)	ccnt1 (ENSONIG00000033395)	sarnp (ENSONIG00000016523)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT01030000234941.d.a	ENSGT00950000182888.a.a.a.f	ENSGT00600000085659.b.cb.a	ENSGT00600000085659.b.db	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a.f.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Haplochromini	ANCESTRAL SPECIES	20	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT01030000234941.d.a	ENSGT00950000182888.a.a.a.f	ENSGT00600000085659.b.cb.b	ENSGT00600000085659.b.db	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a.f.a.b #35	ENSGT01050000244940.a.a.f.a.a.a #35	ENSGT00530000063607.a.k #34	ENSGT00940000155808	ENSGT00940000159544
Burton s mouthbrooder	MODERN SPECIES	295				ENSHBUG00000009913	ENSHBUG00000009902	ENSHBUG00000009887	ENSHBUG00000009872	ENSHBUG00000009856	ENSHBUG00000009849	ENSHBUG00000009839	hsd17b10 (ENSHBUG00000009821)	FAM120C (ENSHBUG00000009772)	IDH3G (ENSHBUG00000009723)	AVPR2 (ENSHBUG00000009313)	slc16a1b (ENSHBUG00000009304)	lima1a (ENSHBUG00000009288) #22	spryd3 (ENSHBUG00000009269)	igfbp6b (ENSHBUG00000009215)	ENSHBUG00000009199	gpr182 (ENSHBUG00000009183)	ENSHBUG00000009175	agap2 (ENSHBUG00000009155)	tspan31 (ENSHBUG00000009087)	MARCHF9 (ENSHBUG00000009054)	SLC11A2 (ENSHBUG00000009034) #15	ctdsp2 (ENSHBUG00000009013)	TMBIM6 (ENSHBUG00000008997) #35	ENSHBUG00000008905 #34	kansl2 (ENSHBUG00000008846)	ccnt1 (ENSHBUG00000008778)	sarnp (ENSHBUG00000008761)
Haplochromini_A	ANCESTRAL SPECIES	17	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c.b	ENSGT01030000234941.c.a	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT00950000183145.B.a.a.b.f.e.b.a.b	ENSGT01030000234941.d.a	ENSGT00950000182888.a.a.a.f	ENSGT00600000085659.b.cb.a	ENSGT00600000085659.b.db.d	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a.f.a.b #35	ENSGT00530000063607.a.k #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Haplochromini_B	ANCESTRAL SPECIES	14	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c.b	ENSGT01030000234941.c.a	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT00950000183145.B.a.a.b.f.e.b.a.b	ENSGT00950000182888.a.a.a.f	ENSGT00600000085659.b.cb.b	ENSGT00600000085659.b.db.d	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a.f.a.b #35	ENSGT00530000063607.a.k #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Zebra mbuna	MODERN SPECIES	1103	ENSMZEG00005026737	ENSMZEG00005026736	ENSMZEG00005026734	ENSMZEG00005026733	ENSMZEG00005026721	ENSMZEG00005026718	ENSMZEG00005026717	ENSMZEG00005026716	ENSMZEG00005026715	ENSMZEG00005026713	hsd17b10 (ENSMZEG00005026712)	FAM120C (ENSMZEG00005026707)	IDH3G (ENSMZEG00005026700)	AVPR2 (ENSMZEG00005026693)	slc16a1b (ENSMZEG00005026686)	lima1a (ENSMZEG00005026681) #22	spryd3 (ENSMZEG00005026676)	igfbp6b (ENSMZEG00005026673)	ENSMZEG00005026669	gpr182 (ENSMZEG00005026668)	ZBTB39 (ENSMZEG00005026667)	agap2 (ENSMZEG00005026665)	tspan31 (ENSMZEG00005026663)	MARCHF9 (ENSMZEG00005026662)	SLC11A2 (ENSMZEG00005026660) #15	ctdsp2 (ENSMZEG00005026657)	TMBIM6 (ENSMZEG00005026655) #35	ENSMZEG00005026652	ENSMZEG00005026639	ENSMZEG00005026629	ENSMZEG00005026607
Eastern happy	MODERN SPECIES	12	ENSACLG00000014688	ENSACLG00000014701	ENSACLG00000015000	ENSACLG00000015011	ENSACLG00000015032	ENSACLG00000015048	ENSACLG00000015061	ENSACLG00000015095	hsd17b10 (ENSACLG00000015184)	ENSACLG00000015193	FAM120C (ENSACLG00000015204)	IDH3G (ENSACLG00000015285)	AVPR2 (ENSACLG00000015327)	ENSACLG00000015629	slc16a1b (ENSACLG00000015644)	lima1a (ENSACLG00000015680) #22	spryd3 (ENSACLG00000015730)	igfbp6b (ENSACLG00000015779)	ENSACLG00000015867	gpr182 (ENSACLG00000015897)	ZBTB39 (ENSACLG00000015907)	agap2 (ENSACLG00000015923)	tspan31 (ENSACLG00000016046)	MARCHF9 (ENSACLG00000016086)	SLC11A2 (ENSACLG00000016101) #15	ctdsp2 (ENSACLG00000016131)	TMBIM6 (ENSACLG00000016162) #35	ENSACLG00000016254 #34	kansl2 (ENSACLG00000016389)	ccnt1 (ENSACLG00000016462)	sarnp (ENSACLG00000016479)
P. nyererei	MODERN SPECIES	401						ENSPNYG00000022624	ENSPNYG00000022619	ENSPNYG00000022615	ENSPNYG00000022608	ENSPNYG00000022606	hsd17b10 (ENSPNYG00000022597)	FAM120C (ENSPNYG00000022579)	IDH3G (ENSPNYG00000022555)	AVPR2 (ENSPNYG00000022519)	slc16a1b (ENSPNYG00000022495)	ENSPNYG00000022485 #22	spryd3 (ENSPNYG00000022475)	igfbp6b (ENSPNYG00000022458)	ENSPNYG00000022443	gpr182 (ENSPNYG00000022437)	ENSPNYG00000022425	agap2 (ENSPNYG00000022408)	tspan31 (ENSPNYG00000022394)	MARCHF9 (ENSPNYG00000022383)	SLC11A2 (ENSPNYG00000022368) #15	ctdsp2 (ENSPNYG00000022349)	TMBIM6 (ENSPNYG00000022335) #35	ENSPNYG00000022323 #34	kansl2 (ENSPNYG00000022286)	ccnt1 (ENSPNYG00000022274)	sarnp (ENSPNYG00000022266)
Lyretail cichlid	MODERN SPECIES	321									ENSNBRG00000023964	ENSNBRG00000023975	ENSNBRG00000023983	FAM120C (ENSNBRG00000023990)	ENSNBRG00000023997	AVPR2 (ENSNBRG00000024000)	slc16a1b (ENSNBRG00000024006)	ENSNBRG00000024010 #22	spryd3 (ENSNBRG00000024017)	igfbp6b (ENSNBRG00000024023)	ENSNBRG00000024036	gpr182 (ENSNBRG00000024049)	ZBTB39 (ENSNBRG00000024053)	agap2 (ENSNBRG00000024062)	tspan31 (ENSNBRG00000024072)	MARCHF9 (ENSNBRG00000024076)	SLC11A2 (ENSNBRG00000024127) #15	ctdsp2 (ENSNBRG00000024183)	TMBIM6 (ENSNBRG00000024186) #35	ENSNBRG00000024191 #34	kansl2 (ENSNBRG00000000244)	ccnt1 (ENSNBRG00000000307)	ENSNBRG00000000341
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Tetraodontidae	ANCESTRAL SPECIES	65															ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000159544	ENSGT00400000022086.b.a.a	ENSGT00390000016168.b
Tetraodon	MODERN SPECIES	26	zgc:86609 (ENSTNIG00000014954)	IQSEC2 (ENSTNIG00000014953)	PDZD4 (ENSTNIG00000003491)	ENSTNIG00000003492	PFKFB1 (ENSTNIG00000006832)	ndnl2 (ENSTNIG00000006831)	ENSTNIG00000006830	tafazzin (ENSTNIG00000006829)	atp6ap1a (ENSTNIG00000006828)	acss2 (ENSTNIG00000006827)	mapre1b (ENSTNIG00000006826)	ENSTNIG00000006825	dnmt3bb.1 (ENSTNIG00000006824)	dnmt3bb.1 (ENSTNIG00000006823)	commd7 (ENSTNIG00000006822)	lima1a (ENSTNIG00000002916) #22	spryd3 (ENSTNIG00000002915)	igfbp6b (ENSTNIG00000002914)	ENSTNIG00000002913	ENSTNIG00000002912	ZBTB39 (ENSTNIG00000002910)	agap2 (ENSTNIG00000002909)	MARCHF9 (ENSTNIG00000002908)	ENSTNIG00000002907 #15	ENSTNIG00000005487	rabep1 (ENSTNIG00000004174)	kcnj1b (ENSTNIG00000003768)	foxred1 (ENSTNIG00000003767)	FCHSD2 (ENSTNIG00000003715)	ENSTNIG00000003714	MYO7A (ENSTNIG00000003713)
Fugu	MODERN SPECIES	15	ENSTRUG00000011439	tafazzin (ENSTRUG00000011612)	atp6ap1a (ENSTRUG00000026680)	acss2 (ENSTRUG00000011909)	ndnl2 (ENSTRUG00000024906)	atp6ap1a (ENSTRUG00000011744)	mapre1b (ENSTRUG00000022779)	ENSTRUG00000030439	dnmt3bb.1 (ENSTRUG00000012300)	commd7 (ENSTRUG00000012643)	nol4lb (ENSTRUG00000025524)	srms (ENSTRUG00000025115)	ENSTRUG00000029297	ptk6b (ENSTRUG00000027190)	SLC16A1 (ENSTRUG00000001072)	lima1a (ENSTRUG00000000912) #22	spryd3 (ENSTRUG00000000826)	igfbp6b (ENSTRUG00000000803)	ENSTRUG00000000666	gpr182 (ENSTRUG00000000652)	ZBTB39 (ENSTRUG00000031375)	ENSTRUG00000029575	ENSTRUG00000032233	ENSTRUG00000017374	ENSTRUG00000030841	ENSTRUG00000032051	ENSTRUG00000031600	agap2 (ENSTRUG00000000268)	tspan31 (ENSTRUG00000000293)	MARCHF9 (ENSTRUG00000032327)	slc11 alpha (ENSTRUG00000000316) #15
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Ballan wrasse	MODERN SPECIES	592										hsd17b10 (ENSLBEG00000002746)	ENSLBEG00000002721	FAM120C (ENSLBEG00000002623)	IDH3G (ENSLBEG00000002567)	AVPR2 (ENSLBEG00000002537)	slc16a1b (ENSLBEG00000002510)	lima1a (ENSLBEG00000002495) #22	spryd3 (ENSLBEG00000002452)	igfbp6b (ENSLBEG00000002443)	ENSLBEG00000002420
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Eupecaria_C	ANCESTRAL SPECIES	31											ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00990000208548
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	48	ENSGT00940000163127	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544
European seabass	MODERN SPECIES	14	ENSDLAG00005032616	ENSDLAG00005017515	ENSDLAG00005024046	ENSDLAG00005024211	ENSDLAG00005024272	ENSDLAG00005024279	ENSDLAG00005024292	ENSDLAG00005024330	ENSDLAG00005024335	ENSDLAG00005024337	ENSDLAG00005030189	ENSDLAG00005024360	ENSDLAG00005026944	ENSDLAG00005029390	ENSDLAG00005024367	lima1a (ENSDLAG00005024372) #22	spryd3 (ENSDLAG00005024384)	ENSDLAG00005024413	igfbp6b (ENSDLAG00005024414)	ENSDLAG00005032545	ENSDLAG00005024472	agap2 (ENSDLAG00005024475)	tspan31 (ENSDLAG00005031145)	MARCHF9 (ENSDLAG00005032208)	ENSDLAG00005024550 #15	ctdsp2 (ENSDLAG00005024763)	ENSDLAG00005024766 #35	ENSDLAG00005001244 #34	kansl2 (ENSDLAG00005001268)	ENSDLAG00005001291	ENSDLAG00005033184
Large yellow croaker	MODERN SPECIES	487	FAM187A (ENSLCRG00005010813)	rgs19 (ENSLCRG00005010811)	tcea2 (ENSLCRG00005010810)	SOX18 (ENSLCRG00005010808)	xkr7b (ENSLCRG00005010806)	CCM2L (ENSLCRG00005010805)	ENSLCRG00005010804	ENSLCRG00005010802	ENSLCRG00005010801	hsd17b10 (ENSLCRG00005010793)	FAM120C (ENSLCRG00005009934)	IDH3G (ENSLCRG00005009928)	AVPR2 (ENSLCRG00005009927)	slc16a1b (ENSLCRG00005009925)	ENSLCRG00005009924	lima1a (ENSLCRG00005009922) #22	spryd3 (ENSLCRG00005009850)	igfbp6b (ENSLCRG00005009843)	ENSLCRG00005009035	gpr182 (ENSLCRG00005009022)	ZBTB39 (ENSLCRG00005009021)	agap2 (ENSLCRG00005008954)	tspan31 (ENSLCRG00005008943)	MARCHF9 (ENSLCRG00005008940)	ENSLCRG00005008341 #15	SLC11A2 (ENSLCRG00005008308) #15	ctdsp2 (ENSLCRG00005008307)	TMBIM6 (ENSLCRG00005008305) #35	ENSLCRG00005008304 #34	kansl2 (ENSLCRG00005008290)	ccnt1 (ENSLCRG00005008283)
Gilthead seabream	MODERN SPECIES	21	TFCP2 (ENSSAUG00010010667) #12	pou6f1 (ENSSAUG00010010662) #11	dazap2 (ENSSAUG00010010660) #10	ENSSAUG00010010659	bin2a (ENSSAUG00010010658)	ENSSAUG00010010657	racgap1 (ENSSAUG00010010545) #28	ENSSAUG00010010537	CS (ENSSAUG00010010523)	COQ10A (ENSSAUG00010010520)	hsd17b10 (ENSSAUG00010010517)	FAM120C (ENSSAUG00010010504)	IDH3G (ENSSAUG00010010066)	AVPR2 (ENSSAUG00010010056)	SLC16A1 (ENSSAUG00010010049)	lima1a (ENSSAUG00010010042) #22	spryd3 (ENSSAUG00010010036)	igfbp6b (ENSSAUG00010010033)	ENSSAUG00010009120	gpr182 (ENSSAUG00010009086)	ENSSAUG00010009082	agap2 (ENSSAUG00010008972)	tspan31 (ENSSAUG00010008966)	MARCHF9 (ENSSAUG00010008965)	ENSSAUG00010004769 #15	ctdsp2 (ENSSAUG00010004687)	TMBIM6 (ENSSAUG00010004681) #35	ENSSAUG00010004677 #34	kansl2 (ENSSAUG00010004670)	ccnt1 (ENSSAUG00010004662)	slc5a6a (ENSSAUG00010004631)
Perciformes	ANCESTRAL SPECIES	4	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00390000006349	ENSGT00940000163127	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00390000016940.c.a.a	ENSGT00730000111107	ENSGT00390000001138.a	ENSGT00390000013978.d	ENSGT00940000176879	ENSGT00950000183178.a	ENSGT00390000002174.a	ENSGT00940000156832	ENSGT00950000183167.a.b.b.b #14	ENSGT00940000164745	ENSGT00950000183038.a.b.a.h	ENSGT00530000063734.b	ENSGT00940000157144.c.b
Lumpfish	MODERN SPECIES	22	oprl1 (ENSCLMG00005014558)	FAM187A (ENSCLMG00005014560)	rgs19 (ENSCLMG00005014561)	tcea2 (ENSCLMG00005014564)	SOX18 (ENSCLMG00005014635)	xkr7b (ENSCLMG00005014644)	CCM2L (ENSCLMG00005014645)	ENSCLMG00005014648	CABLES2 (ENSCLMG00005014649)	HSD17B10 (ENSCLMG00005014651)	hsd17b10 (ENSCLMG00005014654)	FAM120C (ENSCLMG00005014660)	IDH3G (ENSCLMG00005014663)	AVPR2 (ENSCLMG00005014665)	slc16a1b (ENSCLMG00005014667)	lima1a (ENSCLMG00005014669) #22	SPRYD3 (ENSCLMG00005014672)	igfbp6b (ENSCLMG00005014772)	ENSCLMG00005014773	pym1 (ENSCLMG00005014775)	ENSCLMG00005014776	PAN2 (ENSCLMG00005014783)	ENSCLMG00005014794	ormdl2 (ENSCLMG00005014795)	nemp1 (ENSCLMG00005014798)	cd63 (ENSCLMG00005014800)	letmd1 (ENSCLMG00005014801) #14	zgc:56699 (ENSCLMG00005014810)	nr4a1 (ENSCLMG00005014819)	tamalin (ENSCLMG00005014822)	dgkaa (ENSCLMG00005014856)
Stickleback	MODERN SPECIES	11	NPBWR1 (ENSGACG00000010477)	oprl1 (ENSGACG00000010479)	FAM187A (ENSGACG00000010484)	rgs19 (ENSGACG00000010490)	tcea2 (ENSGACG00000010495)	SOX18 (ENSGACG00000010505)	xkr7b (ENSGACG00000010506)	CCM2L (ENSGACG00000010511)	ENSGACG00000010520	ENSGACG00000010523	hsd17b10 (ENSGACG00000010525)	FAM120C (ENSGACG00000010554)	IDH3G (ENSGACG00000010564)	AVPR2 (ENSGACG00000010636)	slc16a1b (ENSGACG00000010644)	lima1a (ENSGACG00000010685) #22	spryd3 (ENSGACG00000010687)	igfbp6b (ENSGACG00000010694)	ENSGACG00000010696	pym1 (ENSGACG00000010703)	ENSGACG00000010714	PAN2 (ENSGACG00000010722)	ormdl2 (ENSGACG00000010743)	nemp1 (ENSGACG00000010747)	cd63 (ENSGACG00000010752)	letmd1 (ENSGACG00000010770) #14	ENSGACG00000010783	nr4a1 (ENSGACG00000010788)	tamalin (ENSGACG00000010800)	dgkaa (ENSGACG00000010810)	rnf41 (ENSGACG00000010838)
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Pike perch	MODERN SPECIES	103	rgs19 (ENSSLUG00000024530)	tcea2 (ENSSLUG00000024533)	SOX18 (ENSSLUG00000024540)	xkr7b (ENSSLUG00000024542)	CCM2L (ENSSLUG00000024547)	CABLES2 (ENSSLUG00000024551)	ENSSLUG00000024556	ENSSLUG00000024561	ENSSLUG00000024562	ENSSLUG00000024566	hsd17b10 (ENSSLUG00000024569)	FAM120C (ENSSLUG00000024576)	IDH3G (ENSSLUG00000024594)	AVPR2 (ENSSLUG00000024631)	slc16a1b (ENSSLUG00000024633)	lima1a (ENSSLUG00000024640) #22	ENSSLUG00000024644	spryd3 (ENSSLUG00000024652)	igfbp6b (ENSSLUG00000024663)	ENSSLUG00000024675	gpr182 (ENSSLUG00000024703)	ZBTB39 (ENSSLUG00000024706)	agap2 (ENSSLUG00000024722)	tspan31 (ENSSLUG00000024752)	MARCHF9 (ENSSLUG00000024754)	SLC11A2 (ENSSLUG00000001755) #15	ctdsp2 (ENSSLUG00000002138)	TMBIM6 (ENSSLUG00000002156) #35	ENSSLUG00000002179 #34	kansl2 (ENSSLUG00000002197)	ccnt1 (ENSSLUG00000002225)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	21	atp6ap1a (ENSCGOG00000008064)	acss2 (ENSCGOG00000008124)	mapre1b (ENSCGOG00000010141)	dnmt3bb.2 (ENSCGOG00000010159)	dnmt3bb.1 (ENSCGOG00000011027)	commd7 (ENSCGOG00000012451)	ENSCGOG00000012456	CABLES2 (ENSCGOG00000012459)	ENSCGOG00000012467	hsd17b10 (ENSCGOG00000012470)	FAM120C (ENSCGOG00000012481)	IDH3G (ENSCGOG00000012609)	AVPR2 (ENSCGOG00000012611)	slc16a1b (ENSCGOG00000012613)	ENSCGOG00000012615 #22	ENSCGOG00000012618 #22	spryd3 (ENSCGOG00000012627)	igfbp6b (ENSCGOG00000012674)	ENSCGOG00000012697	gpr182 (ENSCGOG00000013673)	ENSCGOG00000013677	agap2 (ENSCGOG00000013687)	tspan31 (ENSCGOG00000013833)	MARCHF9 (ENSCGOG00000013837)	SLC11A2 (ENSCGOG00000013880) #15	ENSCGOG00000016611	ctdsp2 (ENSCGOG00000016612)	TMBIM6 (ENSCGOG00000016617) #35	ENSCGOG00000016646 #34	kansl2 (ENSCGOG00000016654)	ccnt1 (ENSCGOG00000016683)
Channel bull blenny	MODERN SPECIES	21	tafazzin (ENSCGOG00000007643)	atp6ap1a (ENSCGOG00000008064)	acss2 (ENSCGOG00000008124)	mapre1b (ENSCGOG00000010141)	dnmt3bb.2 (ENSCGOG00000010159)	dnmt3bb.1 (ENSCGOG00000011027)	commd7 (ENSCGOG00000012451)	ENSCGOG00000012456	CABLES2 (ENSCGOG00000012459)	ENSCGOG00000012467	hsd17b10 (ENSCGOG00000012470)	FAM120C (ENSCGOG00000012481)	IDH3G (ENSCGOG00000012609)	AVPR2 (ENSCGOG00000012611)	slc16a1b (ENSCGOG00000012613)	ENSCGOG00000012615 #22	ENSCGOG00000012618 #22	spryd3 (ENSCGOG00000012627)	igfbp6b (ENSCGOG00000012674)	ENSCGOG00000012697	gpr182 (ENSCGOG00000013673)	ENSCGOG00000013677	agap2 (ENSCGOG00000013687)	tspan31 (ENSCGOG00000013833)	MARCHF9 (ENSCGOG00000013837)	SLC11A2 (ENSCGOG00000013880) #15	ENSCGOG00000016611	ctdsp2 (ENSCGOG00000016612)	TMBIM6 (ENSCGOG00000016617) #35	ENSCGOG00000016646 #34	kansl2 (ENSCGOG00000016654)
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00940000163127	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00940000163127	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Climbing perch	MODERN SPECIES	20	ENSATEG00000024724	ENSATEG00000024718	rgs19 (ENSATEG00000030092)	tcea2 (ENSATEG00000024711)	SOX18 (ENSATEG00000027709)	xkr7b (ENSATEG00000024706)	ENSATEG00000024699	ENSATEG00000024695	ENSATEG00000024692	ENSATEG00000024689	ENSATEG00000024686	ENSATEG00000024680	ENSATEG00000029178	ENSATEG00000024678	ENSATEG00000024674	lima1a (ENSATEG00000024671) #22	spryd3 (ENSATEG00000024670)	igfbp6b (ENSATEG00000024668)	ENSATEG00000024660	gpr182 (ENSATEG00000029584)	ENSATEG00000024653	agap2 (ENSATEG00000024642)	tspan31 (ENSATEG00000024634)	MARCHF9 (ENSATEG00000024630)	ENSATEG00000024626 #15	ctdsp2 (ENSATEG00000024623)	ENSATEG00000024618 #35	ENSATEG00000024610 #34	kansl2 (ENSATEG00000024603)	ENSATEG00000024597	ENSATEG00000024594
Siamese fighting fish	MODERN SPECIES	18	hmga1a (ENSBSLG00000015172)	ENSBSLG00000015150	pacsin1a (ENSBSLG00000014934)	SPDEF (ENSBSLG00000014928)	ilrun (ENSBSLG00000014922)	BLTP3A (ENSBSLG00000014475)	taf11 (ENSBSLG00000014455)	ANKS1A (ENSBSLG00000013397)	ENSBSLG00000012415	scube3 (ENSBSLG00000010867)	ENSBSLG00000010501	ENSBSLG00000010215	hsd17b10 (ENSBSLG00000010206)	FAM120C (ENSBSLG00000009766)	ENSBSLG00000009461	lima1a (ENSBSLG00000009446) #22	spryd3 (ENSBSLG00000009424)	igfbp6b (ENSBSLG00000009412)	ENSBSLG00000009027	gpr182 (ENSBSLG00000008819)	ENSBSLG00000008813	ENSBSLG00000008810	agap2 (ENSBSLG00000008604)	tspan31 (ENSBSLG00000008518)	MARCHF9 (ENSBSLG00000008504)	ctdsp2 (ENSBSLG00000008464)	TMBIM6 (ENSBSLG00000008428) #35	ENSBSLG00000008402 #34	kansl2 (ENSBSLG00000008371)	ccnt1 (ENSBSLG00000008316)	sarnp (ENSBSLG00000008269)
Zig-zag eel	MODERN SPECIES	21	tcea2 (ENSMAMG00000006748)	SOX18 (ENSMAMG00000026377)	ENSMAMG00000006721	xkr7b (ENSMAMG00000006707)	ENSMAMG00000006698	ENSMAMG00000018762	ENSMAMG00000006647	ENSMAMG00000006632	ENSMAMG00000006616	ENSMAMG00000025346	ENSMAMG00000028530	ENSMAMG00000006548	ENSMAMG00000024881	ENSMAMG00000006448	ENSMAMG00000006421	lima1a (ENSMAMG00000006398) #22	spryd3 (ENSMAMG00000006361)	igfbp6b (ENSMAMG00000006338)	ENSMAMG00000006306	gpr182 (ENSMAMG00000006301)	ENSMAMG00000027099	agap2 (ENSMAMG00000006264)	tspan31 (ENSMAMG00000027660)	ENSMAMG00000006209	ENSMAMG00000006143 #15	ctdsp2 (ENSMAMG00000006126)	ENSMAMG00000026865 #35	ENSMAMG00000006025 #34	kansl2 (ENSMAMG00000005978)	ENSMAMG00000027040	ENSMAMG00000005942
Carangaria	ANCESTRAL SPECIES	2	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT01090000260499	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Pleuronectoidei	ANCESTRAL SPECIES	24	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01090000260499	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Turbot	MODERN SPECIES	2	ENSSMAG00000017892	ENSSMAG00000017927	rgs19 (ENSSMAG00000032571)	tcea2 (ENSSMAG00000017972)	SOX18 (ENSSMAG00000035569)	xkr7b (ENSSMAG00000027001)	ENSSMAG00000018010	ENSSMAG00000018018	ENSSMAG00000018042	ENSSMAG00000018059	ENSSMAG00000018078	ENSSMAG00000018119	ENSSMAG00000018135	ENSSMAG00000018152	ENSSMAG00000018200	lima1a (ENSSMAG00000018231) #22	spryd3 (ENSSMAG00000018288)	igfbp6b (ENSSMAG00000029360)	ENSSMAG00000018340	gpr182 (ENSSMAG00000018360)	ENSSMAG00000018361	agap2 (ENSSMAG00000018373)	tspan31 (ENSSMAG00000018427)	MARCHF9 (ENSSMAG00000018445)	ENSSMAG00000018450 #15	ctdsp2 (ENSSMAG00000029966)	ENSSMAG00000018507 #35	ENSSMAG00000018530 #34	kansl2 (ENSSMAG00000018536)	ENSSMAG00000018560	ENSSMAG00000018587
Tongue sole	MODERN SPECIES	1	trim101 (ENSCSEG00000008741)	tpd52l2b (ENSCSEG00000008764)	ppdpfb (ENSCSEG00000008812)	ptk6b (ENSCSEG00000008821)	ENSCSEG00000008832	nol4lb (ENSCSEG00000008843)	commd7 (ENSCSEG00000008901)	dnmt3bb.1 (ENSCSEG00000008919)	dnmt3bb.2 (ENSCSEG00000008968)	mapre1 (ENSCSEG00000008992)	hsd17b10 (ENSCSEG00000009023)	FAM120C (ENSCSEG00000009057)	IDH3G (ENSCSEG00000009125)	AVPR2 (ENSCSEG00000009165)	slc16a1b (ENSCSEG00000009249)	lima1a (ENSCSEG00000009263) #22	spryd3 (ENSCSEG00000009310)	igfbp6b (ENSCSEG00000009344)	ENSCSEG00000009357	ENSCSEG00000009369	gpr182 (ENSCSEG00000009374)	agap2 (ENSCSEG00000009387)	tspan31 (ENSCSEG00000009454)	MARCHF9 (ENSCSEG00000009463)	SLC11A2 (ENSCSEG00000009471) #15	ctdsp2 (ENSCSEG00000009526)	TMBIM6 (ENSCSEG00000009530) #35	ENSCSEG00000009548 #34	kansl2 (ENSCSEG00000009572)	ccnt1 (ENSCSEG00000009610)	pmelb (ENSCSEG00000009638)
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00940000163127	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	65																lima1a (ENSLCAG00010003262) #22	spryd3 (ENSLCAG00010003266)	igfbp6b (ENSLCAG00010003269)	ENSLCAG00010003278	gpr182 (ENSLCAG00010003282)	ZBTB39 (ENSLCAG00010003289)	agap2 (ENSLCAG00010003296)	tspan31 (ENSLCAG00010003306)	MARCHF9 (ENSLCAG00010003310)	SLC11A2 (ENSLCAG00010003336) #15	ctdsp2 (ENSLCAG00010003433)	TMBIM6 (ENSLCAG00010003441) #35	ENSLCAG00010003449	ENSLCAG00010003454	scamp2 (ENSLCAG00010003457)	mpi (ENSLCAG00010003465)
Barramundi perch	MODERN SPECIES	572					ENSLCAG00010022402	ENSLCAG00010022404	ENSLCAG00010022406	ENSLCAG00010022409	ENSLCAG00010022413	ENSLCAG00010022415	hsd17b10 (ENSLCAG00010022417)	FAM120C (ENSLCAG00010022421)	IDH3G (ENSLCAG00010022440)	AVPR2 (ENSLCAG00010022446)	SLC16A1 (ENSLCAG00010022449)	ENSLCAG00010022452 #22
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	1213																ENSLCAG00010000488 #22
Barramundi perch	MODERN SPECIES	1818																ENSLCAG00010023402 #22
Seriola	ANCESTRAL SPECIES	25	ENSGT01090000262478	ENSGT00940000160661	ENSGT00530000063991.a	ENSGT00940000160391	ENSGT00940000159974	ENSGT00940000162709	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b	ENSGT01050000244882.b.c.b.b	ENSGT00940000154955.b	ENSGT00940000158313.a.b #22	ENSGT00940000158675.a	ENSGT00940000160528.b	ENSGT00940000156890.a.b	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c	ENSGT00940000160351	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01040000240451.a.b.a	ENSGT01050000244940.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944
Greater amberjack	MODERN SPECIES	145	FAM187A (ENSSDUG00000006447)	rgs19 (ENSSDUG00000006424)	tcea2 (ENSSDUG00000006382)	SOX18 (ENSSDUG00000006366)	xkr7b (ENSSDUG00000006353)	ENSSDUG00000006342	CCM2L (ENSSDUG00000006315)	CABLES2 (ENSSDUG00000006289)	ENSSDUG00000006264	ENSSDUG00000006238	hsd17b10 (ENSSDUG00000006212)	FAM120C (ENSSDUG00000006064)	IDH3G (ENSSDUG00000006013)	AVPR2 (ENSSDUG00000005997)	SLC16A1 (ENSSDUG00000005972)	lima1a (ENSSDUG00000005937) #22	spryd3 (ENSSDUG00000005886)	igfbp6b (ENSSDUG00000005869)	ENSSDUG00000005838	gpr182 (ENSSDUG00000005831)	ZBTB39 (ENSSDUG00000005824)	agap2 (ENSSDUG00000005802)	tspan31 (ENSSDUG00000005782)	MARCHF9 (ENSSDUG00000005761)	SLC11A2 (ENSSDUG00000005711) #15	ctdsp2 (ENSSDUG00000005690)	TMBIM6 (ENSSDUG00000005626) #35	NCKAP5L (ENSSDUG00000005576) #34	kansl2 (ENSSDUG00000005521)	ccnt1 (ENSSDUG00000005498)	sarnp (ENSSDUG00000005484)
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	3215	ENSSLDG00000002052	oprl1 (ENSSLDG00000002070)	ENSSLDG00000002101	rgs19 (ENSSLDG00000002125)	tcea2 (ENSSLDG00000002149)	SOX18 (ENSSLDG00000002289)	xkr7b (ENSSLDG00000002300)	CCM2L (ENSSLDG00000002358)	CABLES2 (ENSSLDG00000002516)	ENSSLDG00000002558	hsd17b10 (ENSSLDG00000002588)	FAM120C (ENSSLDG00000002681)	IDH3G (ENSSLDG00000002768)	AVPR2 (ENSSLDG00000002827)	ENSSLDG00000002993	lima1a (ENSSLDG00000003024) #22	spryd3 (ENSSLDG00000003052)	igfbp6b (ENSSLDG00000003102)	ENSSLDG00000003116	gpr182 (ENSSLDG00000003160)	ZBTB39 (ENSSLDG00000003165)	agap2 (ENSSLDG00000003178)	tspan31 (ENSSLDG00000003223)	MARCHF9 (ENSSLDG00000003272)	ENSSLDG00000003309 #34	SLC11A2 (ENSSLDG00000003407) #15	ctdsp2 (ENSSLDG00000003468)	TMBIM6 (ENSSLDG00000003511) #35	kansl2 (ENSSLDG00000003598)	ccnt1 (ENSSLDG00000003675)	sarnp (ENSSLDG00000003775)
Yellowtail amberjack	MODERN SPECIES	1807																ENSSLDG00000008859 #22
Osteoglossiformes	ANCESTRAL SPECIES	58	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009	ENSGT00940000160855	ENSGT00940000160866	ENSGT00940000161194	ENSGT00940000159254.b	ENSGT00940000161023.b.a	ENSGT00940000160794	ENSGT00940000159522	ENSGT00940000158801.a	ENSGT00950000183123	ENSGT00950000182892.a.a.a	ENSGT00940000158240.e	ENSGT00540000073797	ENSGT00940000158313.a.b #22	ENSGT00940000160528.b	ENSGT00940000156890.a.a	ENSGT00940000154307.D	ENSGT00940000160722	ENSGT00940000158956.c.a	ENSGT00940000158208.a.a	ENSGT00940000155330.b #15	ENSGT01050000244940.a.a.a #35	ENSGT00530000063607.a #34	ENSGT00940000155808	ENSGT00940000159544	ENSGT00390000002944	ENSGT00950000182825.A.a.b.a.b.b	ENSGT00950000182825.A.a.b.a.b.a.b	ENSGT00940000159411.b
Asian bonytongue	MODERN SPECIES	10	hoxc12a (ENSSFOG00015007317)	hoxc11a (ENSSFOG00015007341)	hoxc10a (ENSSFOG00015007361)	hoxc9a (ENSSFOG00015007484)	hoxc8a (ENSSFOG00015016127)	HOXC6 (ENSSFOG00015007516)	HOXC5 (ENSSFOG00015007529)	hoxc4a (ENSSFOG00015007543)	ENSSFOG00015007511	CBX5 (ENSSFOG00015024435)	ENSSFOG00015007588	nfe2 (ENSSFOG00015007607)	znf740b (ENSSFOG00015007637)	csad (ENSSFOG00015007677)	zgc:174906 (ENSSFOG00015007733)	lima1a (ENSSFOG00015007763) #22	ENSSFOG00015030402	igfbp6b (ENSSFOG00015007780)	pip4k2ca (ENSSFOG00015007800)	gpr182 (ENSSFOG00015007835)	ZBTB39 (ENSSFOG00015007838)	agap2 (ENSSFOG00015007865)	tspan31 (ENSSFOG00015007945)	MARCHF9 (ENSSFOG00015027839)	cyp27b1 (ENSSFOG00015028740)	SLC11A2 (ENSSFOG00015008021) #15	TMBIM6 (ENSSFOG00015029364) #35	ENSSFOG00015008118	ENSSFOG00015008133 #34	kansl2 (ENSSFOG00015020671)	ENSSFOG00015027905
P. kingsleyae	MODERN SPECIES	59	hoxc12a (ENSPKIG00000003281)	hoxc11a (ENSPKIG00000003269)	hoxc10a (ENSPKIG00000003221)	hoxc9a (ENSPKIG00000003179)	hoxc8a (ENSPKIG00000003163)	hoxc6a (ENSPKIG00000003147)	HOXC5 (ENSPKIG00000003129)	hoxc4a (ENSPKIG00000003102)	ENSPKIG00000003082	cbx5 (ENSPKIG00000003062)	ENSPKIG00000003028	nfe2 (ENSPKIG00000002997)	znf740b (ENSPKIG00000002966)	csad (ENSPKIG00000002900)	zgc:174906 (ENSPKIG00000002862)	lima1a (ENSPKIG00000002812) #22	igfbp6b (ENSPKIG00000002747)	pip4k2ca (ENSPKIG00000002709)	gpr182 (ENSPKIG00000002695)	ZBTB39 (ENSPKIG00000002690)	agap2 (ENSPKIG00000002601)	tspan31 (ENSPKIG00000002548)	MARCHF9 (ENSPKIG00000002517)	SLC11A2 (ENSPKIG00000002469) #15	TMBIM6 (ENSPKIG00000002418) #35	ENSPKIG00000002369 #34	kansl2 (ENSPKIG00000002317)	ccnt1 (ENSPKIG00000002270)	sarnp (ENSPKIG00000002212)	PFKFB2 (ENSPKIG00000002071)	ENSPKIG00000001967
Spotted gar	MODERN SPECIES	670	med28 (ENSLOCG00000003244)	HASPIN (ENSLOCG00000003251)	fam184b (ENSLOCG00000003271)	ncapg (ENSLOCG00000003287)	ENSLOCG00000003324	slit2 (ENSLOCG00000003341)	PRSS12 (ENSLOCG00000003365)	mettl14 (ENSLOCG00000003385)	NDST4 (ENSLOCG00000003401)	ENSLOCG00000003421	ENSLOCG00000003426	ugt8 (ENSLOCG00000003443)	ANXA10 (ENSLOCG00000003457)	spock3 (ENSLOCG00000003489)	tll1 (ENSLOCG00000003509)	lima1a (ENSLOCG00000003551) #22	ENSLOCG00000003574	ENSLOCG00000003584 #34	kansl2 (ENSLOCG00000003604)	sarnp (ENSLOCG00000003621)	gdf11 (ENSLOCG00000003644)	ccnt1 (ENSLOCG00000003660)	erbb3b (ENSLOCG00000003677)	pa2g4a (ENSLOCG00000003714)	ESYT1 (ENSLOCG00000003733)	ENSLOCG00000003774	avil (ENSLOCG00000003788)	ENSLOCG00000003806	slc11a2 (ENSLOCG00000003816) #15	ENSLOCG00000003853	EEF1AKMT3 (ENSLOCG00000003869)
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Osteoglossocephalai	ANCESTRAL SPECIES	6	ENSGT00940000153173.b.a	ENSGT00940000153979.A	ENSGT00940000155518	ENSGT00940000157526.a	ENSGT00940000158609	ENSGT00530000063608.B.a	ENSGT00940000157782	ENSGT01030000235134	ENSGT01030000235214	ENSGT00530000063608.B.b	ENSGT00940000163423.C	ENSGT00390000005979.b	ENSGT00940000156609	ENSGT00950000183072.b.b ##13	ENSGT00530000063779.A.e.a	ENSGT00940000158313.b #22	ENSGT00530000063779.A.e.b	ENSGT00940000167474	ENSGT00940000156219	ENSGT00930000151775	ENSGT00940000154621.a.a	ENSGT01030000234515.a.a.b ##23	ENSGT00510000048120	ENSGT00390000002220	ENSGT00950000183150.a.b	ENSGT00940000157564	ENSGT00940000166545	ENSGT00940000158665	ENSGT00940000164857	ENSGT00940000157232	ENSGT00550000074800.a.a.b.a
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Asian bonytongue	MODERN SPECIES	14	hoxc12b (ENSSFOG00015016049)	HOXC11 (ENSSFOG00015016066)	HOXC10 (ENSSFOG00015016087)	HOXC9 (ENSSFOG00015016094)	HOXC6 (ENSSFOG00015025872)	hoxc5a (ENSSFOG00015016224)	HOXC4 (ENSSFOG00015016239)	ENSSFOG00015016245	SMUG1 (ENSSFOG00015016264)	ENSSFOG00015016280	cbx5 (ENSSFOG00015032422)	copz1 (ENSSFOG00015016329)	ENSSFOG00015016361	csad (ENSSFOG00015016432)	ENSSFOG00015030375 #22	ENSSFOG00015016697 #22	spryd3 (ENSSFOG00015016713)	igfbp6a (ENSSFOG00015016738)	GPR182 (ENSSFOG00015016757)	agap2 (ENSSFOG00015016767)	TSPAN31 (ENSSFOG00015016811)	cdk4 (ENSSFOG00015016845)	MARCHF9 (ENSSFOG00015025463)	mettl1 (ENSSFOG00015016887)	cyp27b1 (ENSSFOG00015016916)	EEF1AKMT3 (ENSSFOG00015016973)	slc11a2 (ENSSFOG00015016986) #15	ENSSFOG00015017058	ctdsp2 (ENSSFOG00015017069)	avil (ENSSFOG00015017106)	TMBIM6 (ENSSFOG00015017152) #35
Clupeocephala	ANCESTRAL SPECIES	594													ENSGT00940000171486.A	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22
Euteleosteomorpha	ANCESTRAL SPECIES	124	ENSGT01100000263555.a.a.a	ENSGT00940000156082.a.b	ENSGT00730000111116	ENSGT00940000156972.d	ENSGT00940000165310	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01030000235214	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT01090000260278	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000160898	ENSGT00940000158655.e	ENSGT00940000160749.b	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00390000013817
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Salmoninae	ANCESTRAL SPECIES	298		ENSGT00940000165310.h	ENSGT00390000005372.f.b	ENSGT00940000163944.f	ENSGT00940000153979.A.h	ENSGT00940000155518.n.c.a	ENSGT00940000157526.b.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.a.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b.f	ENSGT01030000235214.h	ENSGT00940000163423.C.g.b.e	ENSGT01030000235214.g	ENSGT00950000183072.b.b.b.b ##13	ENSGT00530000063779.A.e.b.h	ENSGT00940000158313.b #22	ENSGT00940000163911.b.c.a	ENSGT00940000156219.e.b.a	ENSGT00940000178412.a.b.a	ENSGT00940000157564.g.a	ENSGT00940000158665.d.g	ENSGT00550000074800.a.b.c	ENSGT00940000163195.B.a.d	ENSGT00940000158859.f.c	ENSGT01030000234621.F.c.e	ENSGT00950000183071.a.a.a.e.b.e	ENSGT00940000156862.w	ENSGT00940000155232.t.a.b.b.i	ENSGT00940000166422.b	ENSGT00940000155232.t.b.b.c	ENSGT00940000153931.b.b.e.b
Huchen	MODERN SPECIES	186						ENSHHUG00000014686	ENSHHUG00000014687	ENSHHUG00000014691	ENSHHUG00000014697	ENSHHUG00000014707	scn1lab (ENSHHUG00000014818)	ENSHHUG00000021796	CSRNP3 (ENSHHUG00000021801) ##13	ENSHHUG00000021805	ENSHHUG00000021812	ENSHHUG00000021825 #22	ENSHHUG00000021846	B3GALT1 (ENSHHUG00000021859)	ENSHHUG00000021865	ABCB11 (ENSHHUG00000021941)	ENSHHUG00000024252	atp5f1b (ENSHHUG00000024265)	ENSHHUG00000024406	klhl41b (ENSHHUG00000024420)	OXGR1 (ENSHHUG00000024425)	ENSHHUG00000024426	dzip1 (ENSHHUG00000024441)	ENSHHUG00000024454	ENSHHUG00000024461	ENSHHUG00000024468	abcc4 (ENSHHUG00000024486)
Acanthomorphata	ANCESTRAL SPECIES	6	ENSGT00940000165984	ENSGT00940000156246.d	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00940000156458.f	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203
Cod	MODERN SPECIES	17	ENSGMOG00000035439	BMPR2 (ENSGMOG00000003678)	ENSGMOG00000003723	ENSGMOG00000003831	stk24b (ENSGMOG00000003884)	ENSGMOG00000003912	GCG (ENSGMOG00000003985)	ENSGMOG00000003999	GCA (ENSGMOG00000004075)	ENSGMOG00000023119	ENSGMOG00000033419	ENSGMOG00000027545	scn1lab (ENSGMOG00000001923)	ENSGMOG00000031590 ##13	ENSGMOG00000001967	ENSGMOG00000022487 #22	ENSGMOG00000022738	ENSGMOG00000010088	DHRS9 (ENSGMOG00000010111)	ENSGMOG00000010121	ENSGMOG00000010132	ENSGMOG00000025999	ENSGMOG00000024621	ENSGMOG00000029101	dzip1 (ENSGMOG00000017199)	ENSGMOG00000017247	ENSGMOG00000026603	ENSGMOG00000002030	abcc4 (ENSGMOG00000029209)	ENSGMOG00000009773	ENSGMOG00000030719
Euacanthomorphacea	ANCESTRAL SPECIES	36	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000165984	ENSGT00940000156246.d	ENSGT00950000182897.A	ENSGT00940000156561.a.b.b	ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT01090000260051.b.a.a.a.b	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158313.a.a #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Perciformes	ANCESTRAL SPECIES	24	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Channel bull blenny	MODERN SPECIES	11	ENSCGOG00000006351	slc15a1b (ENSCGOG00000007513)	stk24b (ENSCGOG00000007524)	ENSCGOG00000007840	gcga (ENSCGOG00000017361)	dpp4 (ENSCGOG00000017381)	gca (ENSCGOG00000017727)	KCNH7 (ENSCGOG00000017748)	ENSCGOG00000017757	ENSCGOG00000017760	scn1lab (ENSCGOG00000017814)	ENSCGOG00000019679	ENSCGOG00000019681 ##13	ENSCGOG00000019683	ENSCGOG00000019684	ENSCGOG00000019686 #22	B3GALT1 (ENSCGOG00000019688)	ABCB11 (ENSCGOG00000019700)	ENSCGOG00000019822	atp5f1b (ENSCGOG00000019843)	ENSCGOG00000020240	klhl41b (ENSCGOG00000020244)	oxgr1a.2 (ENSCGOG00000020248)	ENSCGOG00000020249	dzip1 (ENSCGOG00000020251)	CLDN10 (ENSCGOG00000020256)	ENSCGOG00000020257	cldn10a (ENSCGOG00000020263)	abcc4 (ENSCGOG00000020410)	abcc4 (ENSCGOG00000022043)	timmdc1 (ENSCGOG00000022075)
Pike perch	MODERN SPECIES	9	bmpr2a (ENSSLUG00000025709)	ENSSLUG00000025068	slc15a1b (ENSSLUG00000024795)	stk24b (ENSSLUG00000024774)	ENSSLUG00000023255	gcga (ENSSLUG00000023076)	dpp4 (ENSSLUG00000020282)	gca (ENSSLUG00000020151)	ENSSLUG00000020150	ENSSLUG00000020149	ENSSLUG00000020144	ENSSLUG00000020143	scn1lab (ENSSLUG00000019268)	ENSSLUG00000019164 ##13	XIRP2 (ENSSLUG00000019155)	ENSSLUG00000019139 #22	B3GALT1 (ENSSLUG00000019135)	ABCB11 (ENSSLUG00000003360)	DHRS9 (ENSSLUG00000002416)	atp5f1b (ENSSLUG00000002324)	ENSSLUG00000002298	klhl41b (ENSSLUG00000002288)	oxgr1a.2 (ENSSLUG00000002282)	ENSSLUG00000002259	dzip1 (ENSSLUG00000002243)	ENSSLUG00000002237	ENSSLUG00000002232	cldn10a (ENSSLUG00000002227)	abcc4 (ENSSLUG00000025952)	ENSSLUG00000025944	ENSSLUG00000025943
Ballan wrasse	MODERN SPECIES	228			ENSLBEG00000007114	slc15a1b (ENSLBEG00000007780)	stk24b (ENSLBEG00000008835)	SLC4A10 (ENSLBEG00000008896)	gcga (ENSLBEG00000008978)	dpp4 (ENSLBEG00000009083)	gca (ENSLBEG00000009137)	KCNH7 (ENSLBEG00000009183)	ENSLBEG00000009287	ENSLBEG00000009404	scn1lab (ENSLBEG00000009472)	CSRNP3 (ENSLBEG00000009609) ##13	ENSLBEG00000009677	ENSLBEG00000009813 #22	B3GALT1 (ENSLBEG00000009834)	ABCB11 (ENSLBEG00000009863)	ENSLBEG00000009950	atp5f1b (ENSLBEG00000009989)	ENSLBEG00000010069	klhl41b (ENSLBEG00000010226)	oxgr1a.2 (ENSLBEG00000010237)	ENSLBEG00000010255	dzip1 (ENSLBEG00000010290)	CLDN10 (ENSLBEG00000010362)	ENSLBEG00000010399	cldn10a (ENSLBEG00000010418)	abcc4 (ENSLBEG00000010465)
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Seriola	ANCESTRAL SPECIES	37	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Greater amberjack	MODERN SPECIES	45	bmpr2a (ENSSDUG00000008188)	ENSSDUG00000008222	slc15a1b (ENSSDUG00000008291)	stk24b (ENSSDUG00000008319)	ENSSDUG00000008378	gcga (ENSSDUG00000008486)	dpp4 (ENSSDUG00000008588)	gca (ENSSDUG00000008611)	ENSSDUG00000008634	ENSSDUG00000008688	ENSSDUG00000008703	scn1lab (ENSSDUG00000008763)	ENSSDUG00000008931	ENSSDUG00000008944 ##13	ENSSDUG00000008950	ENSSDUG00000008966 #22	B3GALT1 (ENSSDUG00000008972)	ABCB11 (ENSSDUG00000008985)	ENSSDUG00000009035	atp5f1b (ENSSDUG00000009115)	ENSSDUG00000009149	klhl41b (ENSSDUG00000009260)	oxgr1a.2 (ENSSDUG00000009281)	ENSSDUG00000009287	dzip1 (ENSSDUG00000009319)	CLDN10 (ENSSDUG00000009377)	ENSSDUG00000009392	cldn10a (ENSSDUG00000009409)	abcc4 (ENSSDUG00000009429)	abcc4 (ENSSDUG00000009498)	timmdc1 (ENSSDUG00000009554)
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000176946.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT01090000260278	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Lyretail cichlid	MODERN SPECIES	296	ENSNBRG00000009427	ap1b1 (ENSNBRG00000009458)	rasl10a (ENSNBRG00000009522)	osbp2b (ENSNBRG00000009531)	ccdc117 (ENSNBRG00000009563)	tcn2 (ENSNBRG00000009574)	dguok (ENSNBRG00000009586)	ENSNBRG00000009600	ank1a (ENSNBRG00000009617)	ENSNBRG00000009635	ANK1 (ENSNBRG00000009668)	ebf2 (ENSNBRG00000009759)	EPX (ENSNBRG00000009796)	SMUG1 (ENSNBRG00000009836)	ENSNBRG00000009897	ENSNBRG00000010004 #22	SPRYD3 (ENSNBRG00000010027)	ENSNBRG00000010061	PIP4K2C (ENSNBRG00000010097)	ENSNBRG00000010131	cdk4 (ENSNBRG00000010216)	mettl1 (ENSNBRG00000010232)	cyp27b1 (ENSNBRG00000010272)	mcrs1 (ENSNBRG00000010328)	suox (ENSNBRG00000010397)	MMP19 (ENSNBRG00000010412)	ENSNBRG00000010447	timeless (ENSNBRG00000010495)	prph (ENSNBRG00000010732)	pmela (ENSNBRG00000010753)	cdk2 (ENSNBRG00000010772)
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Burton s mouthbrooder	MODERN SPECIES	336	sumf1 (ENSHBUG00000022655)	ENSHBUG00000022660	ENSHBUG00000022698	ENSHBUG00000022708	ESYT1 (ENSHBUG00000022844)	ENSHBUG00000022899	ENSHBUG00000022917	LRP1 (ENSHBUG00000023175)	ENSHBUG00000023230	FAIM2 (ENSHBUG00000000712) #32	nr1d4b (ENSHBUG00000023324)	rargb (ENSHBUG00000023416)	calcoco1b (ENSHBUG00000023483)	SMUG1 (ENSHBUG00000023504)	ENSHBUG00000023586	ENSHBUG00000023674 #22	SPRYD3 (ENSHBUG00000023746)	ENSHBUG00000023752	PIP4K2C (ENSHBUG00000023827)	AGAP2 (ENSHBUG00000023833)	cdk4 (ENSHBUG00000004309)	MARCHF9 (ENSHBUG00000004358)	cyp27b1 (ENSHBUG00000004374)	mcrs1 (ENSHBUG00000004439)	suox (ENSHBUG00000004452)	MMP19 (ENSHBUG00000004457)	ENSHBUG00000004464	timeless (ENSHBUG00000004541)	prph (ENSHBUG00000004593)	pmela (ENSHBUG00000004622)	cdk2 (ENSHBUG00000004649)
Midas cichlid	MODERN SPECIES	401									nr1d4b (ENSACIG00000001808)	rargb (ENSACIG00000001834)	ENSACIG00000001859	SMUG1 (ENSACIG00000001873)	ENSACIG00000001888	ENSACIG00000001908	ENSACIG00000001915	ENSACIG00000001949 #22	SPRYD3 (ENSACIG00000001968)	igfbp6a (ENSACIG00000001997)	PIP4K2C (ENSACIG00000002008)	AGAP2 (ENSACIG00000002031)	cdk4 (ENSACIG00000002072)	ENSACIG00000002092	MARCHF9 (ENSACIG00000002099)	mettl1 (ENSACIG00000002114)	cyp27b1 (ENSACIG00000002125)	mcrs1 (ENSACIG00000002144)	suox (ENSACIG00000002183)	MMP19 (ENSACIG00000002192)	ENSACIG00000002231	timeless (ENSACIG00000002244)	prph (ENSACIG00000002306)
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Spiny chromis	MODERN SPECIES	1237												scn1lab (ENSAPOG00000023470)	ENSAPOG00000023377	ENSAPOG00000023363 ##13	ENSAPOG00000023345	ENSAPOG00000023319 #22
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000176946.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00940000176946.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000153979.A	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01060000248672	ENSGT00950000183072.b.b.b ##13	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Mummichog	MODERN SPECIES	2459											nr1d4b (ENSFHEG00000008676)	rargb (ENSFHEG00000008664)	calcoco1b (ENSFHEG00000008633)	SMUG1 (ENSFHEG00000008612)	ENSFHEG00000008578	ENSFHEG00000008503 #22	SPRYD3 (ENSFHEG00000008425)	ENSFHEG00000008355	PIP4K2C (ENSFHEG00000008340)	AGAP2 (ENSFHEG00000008296)	cdk4 (ENSFHEG00000008283)	MARCHF9 (ENSFHEG00000008250)	mettl1 (ENSFHEG00000008220)	cyp27b1 (ENSFHEG00000008208)	mcrs1 (ENSFHEG00000008194)	suox (ENSFHEG00000008051)	MMP19 (ENSFHEG00000008046)	ENSFHEG00000008039	timeless (ENSFHEG00000008026)	prph (ENSFHEG00000007898)	pmela (ENSFHEG00000007875)
Aplocheiloidei	ANCESTRAL SPECIES	92															ENSGT00530000063779.A.e.b	ENSGT00940000158313.b #22	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT00940000153931.b.b.d	ENSGT00390000013817
Turquoise killifish	MODERN SPECIES	1615	ENSNFUG00015005696	STK24B (ENSNFUG00015005391)	SLC15A1 (ENSNFUG00015004676)	ENSNFUG00015004598	ENSNFUG00015004587	ENSNFUG00015004584	ENSNFUG00015004552	MYADML2 (ENSNFUG00015004529)	ENSNFUG00015004525	ENSNFUG00015004520	ENSNFUG00015004512	ENSNFUG00015004501	ENSNFUG00015004494	ENSNFUG00015004477	ENSNFUG00015004461	ENSNFUG00015004458 #22	B3GALT1 (ENSNFUG00015004455)	ENSNFUG00015004452	ABCB11 (ENSNFUG00015001572)	ENSNFUG00015000823	DHRS9 (ENSNFUG00015000820)	ATP5B (ENSNFUG00015000801)	ENSNFUG00015000767	KLHL41 (ENSNFUG00015000757)	oxgr1a.2 (ENSNFUG00015000753)	ENSNFUG00015000752	DZIP1 (ENSNFUG00015000738)	ABCC4 (ENSNFUG00015000602)	CLDN10 (ENSNFUG00015000564)	ENSNFUG00015000554	CLDN10 (ENSNFUG00015000543)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000157144.c.a	ENSGT01000000214440.B	ENSGT00940000161297	ENSGT00940000164642	ENSGT00940000155330.c #15	ENSGT00940000157899.b.i	ENSGT00940000155460.i.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000158313.b #22
Chinese medaka	MODERN SPECIES	1320			ENSOSIG00000023173	SLC15A1 (ENSOSIG00000023505)	stk24b (ENSOSIG00000023563)	ENSOSIG00000023648	gcga (ENSOSIG00000023785)	dpp4 (ENSOSIG00000023832)	gca (ENSOSIG00000023847)	ENSOSIG00000023850	ENSOSIG00000023855	ENSOSIG00000023856	scn1lab (ENSOSIG00000023979)	ENSOSIG00000023991	CSRNP3 (ENSOSIG00000023992) ##13	ENSOSIG00000023993 #22	ENSOSIG00000023994	B3GALT1 (ENSOSIG00000023996)	ABCB11 (ENSOSIG00000024000)	ENSOSIG00000024001	atp5f1b (ENSOSIG00000024002)	ENSOSIG00000024004	oxgr1a.2 (ENSOSIG00000024005)	HS6ST3 (ENSOSIG00000001261)	dzip1 (ENSOSIG00000001264)	ENSOSIG00000001266	ENSOSIG00000001268
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00950000183038.a.b.a.g	ENSGT00940000157144.c.a	ENSGT01000000214440.B	ENSGT00940000161297	ENSGT00940000164642	ENSGT00940000155330.c #15	ENSGT00940000159286.b	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00390000004897	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158675.b	ENSGT00940000160528.a	ENSGT00940000156890.a.a	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00390000005536	ENSGT00390000003749	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000160203	ENSGT00950000183188.A.a.a
Javanese ricefish	DUPLICATION
Javanese ricefish	MODERN SPECIES	19	ENSOJAG00000007290	ENSOJAG00000007319	ENSOJAG00000007352	ENSOJAG00000007366	ENSOJAG00000007417	ENSOJAG00000011869	ENSOJAG00000011896	ENSOJAG00000011946	ENSOJAG00000012671 #32	nr1d4b (ENSOJAG00000012723)	rargb (ENSOJAG00000012740)	calcoco1b (ENSOJAG00000012803)	SMUG1 (ENSOJAG00000012817)	ENSOJAG00000012853	ENSOJAG00000012929	ENSOJAG00000012939 #22	SPRYD3 (ENSOJAG00000012990)	PIP4K2C (ENSOJAG00000013040)	AGAP2 (ENSOJAG00000013531)	cdk4 (ENSOJAG00000013996)	MARCHF9 (ENSOJAG00000014030)	METTL1 (ENSOJAG00000014039)	cyp27b1 (ENSOJAG00000014062)	mcrs1 (ENSOJAG00000014218)	suox (ENSOJAG00000014424)	MMP19 (ENSOJAG00000014428)	ENSOJAG00000014453	timeless (ENSOJAG00000014474)	prph (ENSOJAG00000014632)	pmela (ENSOJAG00000014653)	cdk2 (ENSOJAG00000014740)
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000014651	slc15a1b (ENSOJAG00000017657)	stk24b (ENSOJAG00000018956)	ENSOJAG00000019122	gcga (ENSOJAG00000020168)	dpp4 (ENSOJAG00000020207)	gca (ENSOJAG00000021801)	KCNH7 (ENSOJAG00000021816)	ENSOJAG00000021866	ENSOJAG00000021868	scn1lab (ENSOJAG00000021897)	ENSOJAG00000022151	ENSOJAG00000022152 ##13	ENSOJAG00000022158	XIRP2 (ENSOJAG00000022170)	ENSOJAG00000022186 #22	ABCB11 (ENSOJAG00000022235)	ENSOJAG00000023147	atp5f1b (ENSOJAG00000023157)	ENSOJAG00000023182	klhl41b (ENSOJAG00000023207)	ENSOJAG00000023212	ENSOJAG00000023219	ENSOJAG00000023225	CLDN10 (ENSOJAG00000023239)	ENSOJAG00000023247	abcc4 (ENSOJAG00000023409)	timmdc1 (ENSOJAG00000023431)	poglut1 (ENSOJAG00000023436)	ENSOJAG00000023466	VANGL1 (ENSOJAG00000023520)
Otomorpha	ANCESTRAL SPECIES	114				ENSGT00940000154578.A.c.a	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.j	ENSGT00390000004897	ENSGT00940000171486.A	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b #22	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00940000158956.d	ENSGT00940000154770	ENSGT00940000158208.a.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000161297	ENSGT00940000155330.c #15	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT01050000244940.a.a #35	ENSGT00390000002215.j	ENSGT00530000063607.a #34
Clupeiformes	ANCESTRAL SPECIES	928															ENSGT00940000167488	ENSGT00940000158313.b #22
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	21	rargb (ENSCHAG00000016151)	calcoco1b (ENSCHAG00000016269)	HOXC13 (ENSCHAG00000016293)	hoxc12b (ENSCHAG00000016308)	hoxc11a (ENSCHAG00000016330)	hoxc10a (ENSCHAG00000016350)	HOXC9 (ENSCHAG00000016356)	HOXC8 (ENSCHAG00000016365)	ENSCHAG00000016415	hoxc4a (ENSCHAG00000016430)	SMUG1 (ENSCHAG00000016446)	hnrnpa1a (ENSCHAG00000016453)	copz1 (ENSCHAG00000016471)	ENSCHAG00000016783	ENSCHAG00000016913	ENSCHAG00000016927 #22	igfbp6a (ENSCHAG00000017015)	PIP4K2C (ENSCHAG00000017028)	GPR182 (ENSCHAG00000017320)	AGAP2 (ENSCHAG00000017332)	TSPAN31 (ENSCHAG00000017636)	cdk4 (ENSCHAG00000017641)	MARCHF9 (ENSCHAG00000017653)	mettl1 (ENSCHAG00000017674)	cyp27b1 (ENSCHAG00000017688)	ENSCHAG00000018097	eefsec (ENSCHAG00000018118)	ruvbl1 (ENSCHAG00000018143)	mustn1a (ENSCHAG00000018168)	RFT1 (ENSCHAG00000018175)	prkcda (ENSCHAG00000018303)
Atlantic herring	MODERN SPECIES	13	MPP4 (ENSCHAG00000008043)	ALS2 (ENSCHAG00000007884)	cdk15 (ENSCHAG00000007829)	fzd7b (ENSCHAG00000007812)	sumo1 (ENSCHAG00000007753)	nop58 (ENSCHAG00000007579)	SP3 (ENSCHAG00000007545)	ENSCHAG00000006018	ENSCHAG00000005919	ENSCHAG00000005850	ENSCHAG00000005781	ENSCHAG00000005759	scn1lab (ENSCHAG00000001804)	ENSCHAG00000001653 ##13	ENSCHAG00000001617	ENSCHAG00000001566 #22	ABCB11 (ENSCHAG00000001238)	ENSCHAG00000001027 ##23	B3GALT1 (ENSCHAG00000000981)	SLC25A30 (ENSCHAG00000000807)	ednrba (ENSCHAG00000023082)	ENSCHAG00000023073	sugt1 (ENSCHAG00000023067)	CNMD (ENSCHAG00000023062)	PCDH8 (ENSCHAG00000023059)	ENSCHAG00000023057	ENSCHAG00000023055	ENSCHAG00000023041	ENSCHAG00000023032	ENSCHAG00000023020	ENSCHAG00000023016
Otophysi	DUPLICATION
Otophysi	ANCESTRAL SPECIES	392													ENSGT00940000171486.A	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b.e #22	ENSGT00940000158313.a.a #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t
Cyprinoidei	ANCESTRAL SPECIES	111	ENSGT00390000011581	ENSGT00980000199174	ENSGT00940000156091.b	ENSGT00940000154578.A.c.b.c	ENSGT00940000157899.a.a	ENSGT00940000155250.q.b	ENSGT01050000244890.a.b.b.c.a #32	ENSGT00940000164283.b.b	ENSGT00940000156458.e.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000161087.i.b	ENSGT00390000004897	ENSGT00940000165646.A.j.a	ENSGT00940000157046.E	ENSGT00940000167488	ENSGT00940000158313.b.e #22	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00740000115534.a.a.fb.b	ENSGT00390000004215.a.b.a	ENSGT00940000159430	ENSGT00390000012914	ENSGT01030000234623.a.a.a.a.a.d.a	ENSGT00940000157144.c.a	ENSGT00940000161079	ENSGT00950000182908.B.c.a	ENSGT01020000230633	ENSGT00390000006330.a.b	ENSGT00940000155637	ENSGT00940000156785	ENSGT00390000005536
Cyprininae	ANCESTRAL SPECIES	342			ENSGT00940000155250.q.b.b	ENSGT01050000244890.a.b.b.c.a.c #32	ENSGT00940000164283.b.b.c	ENSGT00940000156458.e.b.b	ENSGT00940000156458.e.b.a	ENSGT00950000183025.b.b.e.b.a	ENSGT00940000161087.i.b	ENSGT00940000159254.b.l	ENSGT00390000004897	ENSGT00940000165646.A.j.a	ENSGT00940000157046.E.ub.a.b	ENSGT00940000167488.d	ENSGT00940000157046.E.ub.a.a.b	ENSGT00940000158313.b.e #22	ENSGT00940000160528.a.b	ENSGT00940000156890.a.a.t	ENSGT00740000115534.a.a.fb.b.a.a	ENSGT00390000004215.a.b.a	ENSGT00940000159430.a	ENSGT00940000159430.b	ENSGT00390000012914	ENSGT01030000234623.a.a.a.a.a.d.a	ENSGT00940000161079.a	ENSGT00950000182908.B.c.a	ENSGT00940000164642.j	ENSGT01020000230633	ENSGT00390000006330.a.b	ENSGT00940000155637.hb.a	ENSGT00940000156785.bb
Cyprininae_a	ANCESTRAL SPECIES	245	ENSGT00940000155448.c.a.b	ENSGT00390000011581	ENSGT00940000156091.b.e	ENSGT00940000154578.A.c.b.c.g	ENSGT00940000157899.a.a.l	ENSGT00940000155250.q.b.b	ENSGT01050000244890.a.b.b.c.a.c #32	ENSGT00940000164283.b.b.c	ENSGT00940000156458.e.b.a	ENSGT00950000183025.b.b.e.b.a	ENSGT00940000161087.i.b	ENSGT00940000159254.b.l	ENSGT00390000004897	ENSGT00940000165646.A.j.a.a	ENSGT00940000157046.E.ub.a.a.b	ENSGT00940000158313.b.e #22	ENSGT00940000160528.a.b	ENSGT00940000160528.a.a.b	ENSGT00940000156890.a.a.t	ENSGT00740000115534.a.a.fb.b.a.a	ENSGT00390000004215.a.b.a	ENSGT00940000159430.a	ENSGT00940000159430.b	ENSGT00390000012914	ENSGT01030000234623.a.a.a.a.a.d.a	ENSGT00940000161079.a	ENSGT00950000182908.B.c.a	ENSGT00940000164642.j	ENSGT01020000230633	ENSGT00390000006330.a.b.f	ENSGT00940000155637.hb.b
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	605									rargb (ENSSGRG00000054221)	calcoco1b (ENSSGRG00000001163)	hoxc6b (ENSSGRG00000001182)	SMUG1 (ENSSGRG00000001190)	hnrnpa1a (ENSSGRG00000001201)	ENSSGRG00000001269	ENSSGRG00000001315	ENSSGRG00000001320 #22	igfbp6a (ENSSGRG00000001344)	PIP4K2C (ENSSGRG00000001560)	ENSSGRG00000001629	ENSSGRG00000001636	slc2a10 (ENSSGRG00000001798)	tp53rk (ENSSGRG00000001801)	ENSSGRG00000001805	DGKA (ENSSGRG00000001869)	ENSSGRG00000002411	cnpy2 (ENSSGRG00000002412)	ENSSGRG00000002413	nab2 (ENSSGRG00000002414)	ENSSGRG00000002416	ENSSGRG00000002417	mcrs1 (ENSSGRG00000002421)
Golden-line barbel	MODERN SPECIES	419	ENSSGRG00000020894	phactr3b (ENSSGRG00000020896)	acot8 (ENSSGRG00000020897)	srsf6b (ENSSGRG00000020898)	ift52 (ENSSGRG00000020900)	mybl2b (ENSSGRG00000020913)	LRP1 (ENSSGRG00000020956)	ENSSGRG00000021142	FAIM2 (ENSSGRG00000021486) #32	nr1d4b (ENSSGRG00000021488)	calcoco1b (ENSSGRG00000021490)	hoxc6b (ENSSGRG00000021491)	SMUG1 (ENSSGRG00000021493)	hnrnpa1a (ENSSGRG00000021495)	ENSSGRG00000021498	ENSSGRG00000021505 #22
Otophysi	DUPLICATION
Otophysi	ANCESTRAL SPECIES	186	ENSGT00940000156994	ENSGT00940000156972.c	ENSGT00390000005372.e	ENSGT00940000165362	ENSGT00940000153173.b.a	ENSGT00940000155518.m	ENSGT00940000157526.a	ENSGT00940000158609	ENSGT00530000063608.B.a	ENSGT00940000157782	ENSGT00940000163423.C.g.a	ENSGT00390000005979.b	ENSGT00940000156609	ENSGT00950000183072.b.b.a ##13	ENSGT00530000063779.A.e.a	ENSGT00940000158313.b.f.a #22	ENSGT00940000156219.f	ENSGT00930000151775	ENSGT00940000154621.a.a	ENSGT01030000234515.a.a.b ##23	ENSGT00510000048120	ENSGT00390000002220	ENSGT00940000166545	ENSGT00940000158665.c	ENSGT00940000164857	ENSGT00940000157232	ENSGT00940000165617	ENSGT00940000163195.B.b	ENSGT00390000002753	ENSGT00940000158859.e	ENSGT01030000234607.B
Characiphysae	ANCESTRAL SPECIES	3	ENSGT00940000157974.g	ENSGT00940000153476.b.o.a	ENSGT00940000155995.e.b	ENSGT00940000155972.B	ENSGT00940000176946	ENSGT00940000155318.b.a.c	ENSGT00940000160594.g.b.a	ENSGT00950000182897.B.a.b.b.a	ENSGT00940000157782	ENSGT00990000206932	ENSGT00940000163423.C.g.a	ENSGT00390000005979.b	ENSGT00940000156609	ENSGT00950000183072.b.b.a ##13	ENSGT00530000063779.A.e.a	ENSGT00940000158313.b.f.a #22	ENSGT00940000156219.f	ENSGT00940000154621.a.a	ENSGT01030000234515.a.a.b ##23	ENSGT00510000048120	ENSGT00390000002220	ENSGT00940000155655.B	ENSGT00940000157230.a	ENSGT00940000155359.w.a	ENSGT01050000244842.a.b.a.p	ENSGT00940000156082.a.a	ENSGT00390000008712.d	ENSGT00940000156994	ENSGT00940000156972.c	ENSGT00390000005372.e	ENSGT00940000165362
Channel catfish	MODERN SPECIES	25	gpr1 (ENSIPUG00000019259)	INO80D (ENSIPUG00000019234)	stk24 (ENSIPUG00000019188)	SLC15A1 (ENSIPUG00000019129)	DOCK9 (ENSIPUG00000018881)	farp1 (ENSIPUG00000018812)	RAP2A (ENSIPUG00000018801)	mbnl2 (ENSIPUG00000018701)	slc38a11 (ENSIPUG00000018668)	ENSIPUG00000018662	scn1laa (ENSIPUG00000016486)	ttc21b (ENSIPUG00000016012)	galnt3 (ENSIPUG00000015975)	csrnp3 (ENSIPUG00000015927) ##13	XIRP2 (ENSIPUG00000015910)	ENSIPUG00000015890 #22	B3GALT1 (ENSIPUG00000015871)	stk39 (ENSIPUG00000015784)	cers6 (ENSIPUG00000015693) ##23	nostrin (ENSIPUG00000015633)	spc25 (ENSIPUG00000015557)	TANC1 (ENSIPUG00000015047)	BAZ2B (ENSIPUG00000014799)	CD302 (ENSIPUG00000014763)	RBMS1 (ENSIPUG00000014677)	TANK (ENSIPUG00000014632)	tbr1b (ENSIPUG00000014613)	SLC4A10 (ENSIPUG00000013627)	gcgb (ENSIPUG00000013580)	ENSIPUG00000013485	ifih1 (ENSIPUG00000013367)
Cyprinoidei	ANCESTRAL SPECIES	40	ENSGT00940000156972.c	ENSGT00390000005372.e	ENSGT00940000165362	ENSGT00940000153173.b.a	ENSGT00940000155518.m	ENSGT00940000157526.a	ENSGT00940000158609	ENSGT00530000063608.B.a	ENSGT00940000157782	ENSGT00940000163423.C.g.a	ENSGT00390000005979.b	ENSGT00940000156609.i	ENSGT00950000183072.b.b.a ##13	ENSGT00530000063779.A.e.a	ENSGT00940000167474	ENSGT00940000158313.b.f.a #22	ENSGT00940000156219.f	ENSGT00930000151775	ENSGT00940000154621.a.a	ENSGT01030000234515.a.a.b ##23	ENSGT00510000048120	ENSGT00390000002220	ENSGT00940000166545	ENSGT00940000158665.c	ENSGT00940000164857	ENSGT00940000157232	ENSGT00940000165617	ENSGT00940000163195.B.b	ENSGT00390000002753	ENSGT00940000158859.e	ENSGT01030000234607.B
Cyprininae	ANCESTRAL SPECIES	204	ENSGT00390000008712.d.a	ENSGT00940000156994.j	ENSGT00940000156972.c.a	ENSGT00390000005372.e	ENSGT00940000165362.d	ENSGT00940000153173.b.a.d	ENSGT00940000155518.m.a	ENSGT00940000157526.a.f	ENSGT00940000158609.f	ENSGT00530000063608.B.a.b	ENSGT00940000163423.C.g.a.a	ENSGT00390000005979.b.g	ENSGT00940000156609.i.a	ENSGT00950000183072.b.b.a.c ##13	ENSGT00530000063779.A.e.a.e	ENSGT00940000158313.b.f.a #22	ENSGT00940000156219.f.d	ENSGT00940000154621.a.a.m.a	ENSGT00930000151775	ENSGT00940000154621.a.a.n	ENSGT01030000234515.a.a.b.h ##23	ENSGT00510000048120	ENSGT00390000002220.k	ENSGT00940000166545.e	ENSGT00940000164857.c	ENSGT00940000157232.r	ENSGT00940000165617.b	ENSGT00940000163195.B.b.b	ENSGT00390000002753.e	ENSGT00940000158859.e.c	ENSGT01030000234607.B
Cyprininae_a	ANCESTRAL SPECIES	67	ENSGT00940000156082.a.a.b	ENSGT00390000008712.d.a	ENSGT00940000156972.c.a	ENSGT00390000005372.e	ENSGT00940000165362.d	ENSGT00940000153173.b.a.d	ENSGT00940000155518.m.a	ENSGT00940000157526.a.f	ENSGT00940000158609.f	ENSGT00530000063608.B.a.b	ENSGT00940000163423.C.g.a.a	ENSGT00390000005979.b.g	ENSGT00940000156609.i.a	ENSGT00950000183072.b.b.a.c ##13	ENSGT00530000063779.A.e.a.e	ENSGT00940000158313.b.f.a #22	ENSGT00940000156219.f.d	ENSGT00940000154621.a.a.m.a	ENSGT00930000151775	ENSGT00940000154621.a.a.n	ENSGT01030000234515.a.a.b.h ##23	ENSGT00390000002220.k	ENSGT00940000166545.e	ENSGT00940000158665.c.d	ENSGT00940000164857.c	ENSGT00940000157232.r	ENSGT00940000165617.b	ENSGT00940000163195.B.b.b	ENSGT00390000002753.e	ENSGT00940000158859.e.c	ENSGT01030000234607.B
Golden-line barbel	MODERN SPECIES	288	smap2 (ENSSGRG00000039205)	KCNH7 (ENSSGRG00000039206)	ENSSGRG00000039207	fign (ENSSGRG00000039208)	GRB14 (ENSSGRG00000039209)	ENSSGRG00000039236	ENSSGRG00000039240	ENSSGRG00000039244	ENSSGRG00000039246	ENSSGRG00000039247	ttc21b (ENSSGRG00000039256)	ENSSGRG00000039300	CSRNP3 (ENSSGRG00000039302) ##13	ENSSGRG00000039306	ENSSGRG00000039307	ENSSGRG00000039309 #22	B3GALT1 (ENSSGRG00000039314)	ENSSGRG00000039317
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000158313.b.f.b #22
Cyprinoidei	ANCESTRAL SPECIES	73	ENSGT00950000182892.a.a.b.e	ENSGT00950000182919.C	ENSGT00390000001859.f.b	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d	ENSGT00390000004153.d	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00940000154076.B.b.j	ENSGT00940000155518.n	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01030000235214	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b.f.b #22	ENSGT00940000156219.e.b	ENSGT00940000155749.d	ENSGT01050000244937.a.a.q	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00950000183115.b.a.m.b	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00940000163253.b.c.a	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000159606	ENSGT00940000158239.a.a.d	ENSGT00940000154319
Cyprininae	ANCESTRAL SPECIES	20	ENSGT00950000182919.C.m	ENSGT00390000001859.f.b.b.b	ENSGT00940000157981.a.a.a.c.b	ENSGT00940000156851.d.c.b	ENSGT00910000144296.d	ENSGT00390000004153.d.i	ENSGT00390000000673.a.b.f	ENSGT00390000000673.a.b.e.b	ENSGT00940000155099.k.b.d	ENSGT00940000154076.B.b.i	ENSGT00940000155518.n.b	ENSGT00530000063608.B.b.a	ENSGT00940000163423.C.g.b.h	ENSGT01030000235214.f	ENSGT00530000063779.A.e.b.a	ENSGT00940000158313.b.f.b #22	ENSGT00940000156219.e.b.d	ENSGT00940000155749.d.s	ENSGT01050000244937.a.a.q.a	ENSGT00390000010170.a.b.z	ENSGT00390000003338.x	ENSGT00950000183115.b.a.m.b.b	ENSGT00940000156089.e.a.j	ENSGT00500000044939.k.a	ENSGT00940000163253.b.c.a.c	ENSGT00940000156444.c.o	ENSGT00940000155861.C.e.h	ENSGT00940000159606.e	ENSGT00940000158239.a.a.d.a	ENSGT00940000153534.A.v	ENSGT00940000161395.d
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00950000182919.C.m	ENSGT00390000001859.f.b.a	ENSGT00940000157981.a.a.a.c.b	ENSGT00940000156851.d.c.b	ENSGT00910000144296.d	ENSGT00390000004153.d.i	ENSGT00390000000673.a.b.f	ENSGT00390000000673.a.b.e.b	ENSGT00940000155099.k.b.d	ENSGT00940000154076.B.b.i	ENSGT00940000155518.n.b	ENSGT00530000063608.B.b.a	ENSGT00940000163423.C.g.b.h	ENSGT01030000235214.f	ENSGT00530000063779.A.e.b.a	ENSGT00940000158313.b.f.b #22	ENSGT00940000156219.e.b.d	ENSGT00940000155749.d.s	ENSGT01050000244937.a.a.q.a	ENSGT00390000010170.a.b.z	ENSGT00390000003338.x	ENSGT00950000183115.b.a.m.b.b	ENSGT00940000156089.e.a.j	ENSGT00500000044939.k.a	ENSGT00940000163253.b.c.a.c	ENSGT00390000005159.j.c	ENSGT00940000156444.c.o	ENSGT00940000155861.C.e.h	ENSGT00940000159606.e	ENSGT00940000158239.a.a.d.a	ENSGT00940000153534.A.v
Golden-line barbel	MODERN SPECIES	62	cycsb (ENSSGRG00000028463)	nfe2l2b (ENSSGRG00000028481)	mtx2 (ENSSGRG00000028486)	ENSSGRG00000028581	atp5mc3b (ENSSGRG00000028582)	chrna1 (ENSSGRG00000028593)	GPR155 (ENSSGRG00000028597)	ENSSGRG00000028625	ENSSGRG00000028684	ENSSGRG00000028685	ENSSGRG00000028688	ENSSGRG00000028689	scn1lab (ENSSGRG00000028690)	ENSSGRG00000028692	ENSSGRG00000028693	ENSSGRG00000028694 #22	B3GALT1 (ENSSGRG00000028695)	ATP7B (ENSSGRG00000028705)	HTR2A (ENSSGRG00000029808)	sucla2 (ENSSGRG00000029813)	nudt15 (ENSSGRG00000030224)	itm2ba (ENSSGRG00000030225)	abi2b (ENSSGRG00000030226)	cyp20a1 (ENSSGRG00000030433)	zp2l2 (ENSSGRG00000030484)	tmem237b (ENSSGRG00000030485)	MPP4 (ENSSGRG00000030486)	ALS2 (ENSSGRG00000030626)	cdk15 (ENSSGRG00000030926)	fzd7b (ENSSGRG00000030931)	ENSSGRG00000030932