Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901	ENSGT01030000234542.b.a.a.a.b.b	ENSGT00390000009491.c #23	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989 #24	ENSGT00390000016136 #25	ENSGT00940000160806 #26	ENSGT00940000157062 #27	ENSGT00390000010652.B #28	ENSGT00940000160472 #29	ENSGT00390000004097.b #30	ENSGT00940000164559.B #31	ENSGT00940000161073 #32	ENSGT00390000014184 #33	ENSGT00940000156223 #34
Equus	ANCESTRAL SPECIES	3	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901	ENSGT01030000234542.b.a.a.a.b.b	ENSGT00390000009491.c #23	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989 #24	ENSGT00390000016136 #25	ENSGT00940000160806 #26	ENSGT00940000157062 #27	ENSGT00390000010652.B #28	ENSGT00940000160472 #29	ENSGT00390000004097.b #30	ENSGT00940000164559.B #31	ENSGT00940000161073 #32	ENSGT00390000014184 #33	ENSGT00940000156223 #34
Horse	MODERN SPECIES	26	SHC1 (ENSECAG00000003967) #7	PYGO2 (ENSECAG00000015057) #8	PBXIP1 (ENSECAG00000026849) #9	PMVK (ENSECAG00000016089) #10	KCNN3 (ENSECAG00000018199) #11	ADAR (ENSECAG00000000974) #12	CHRNB2 (ENSECAG00000016633) #13	UBE2Q1 (ENSECAG00000016647) #14	ENSECAG00000023297 #15	SHE (ENSECAG00000023754) #16	IL6R (ENSECAG00000024047) #17	ATP8B2 (ENSECAG00000001415) #18	AQP10 (ENSECAG00000033720) #19	HAX1 (ENSECAG00000027002) #20	UBAP2L (ENSECAG00000005014) #21	C1orf43 (ENSECAG00000017585) #22	NUP210L (ENSECAG00000002401) #23	RAB13 (ENSECAG00000016551) #24	JTB (ENSECAG00000035110) #25	CREB3L4 (ENSECAG00000017552) #26	SLC39A1 (ENSECAG00000020739) #27	CRTC2 (ENSECAG00000023238) #28	DENND4B (ENSECAG00000007422) #29	GATAD2B (ENSECAG00000011357) #30	ENSECAG00000014805 #31	SLC27A3 (ENSECAG00000015841) #32	INTS3 (ENSECAG00000022270) #33	NPR1 (ENSECAG00000000954) #34	ILF2 (ENSECAG00000008567) #35	SNAPIN (ENSECAG00000020426) #36	CHTOP (ENSECAG00000020889) #37
Donkey	MODERN SPECIES	17	SHC1 (ENSEASG00005000225) #7	PYGO2 (ENSEASG00005000238) #8	PBXIP1 (ENSEASG00005026805) #9	PMVK (ENSEASG00005038399) #10	KCNN3 (ENSEASG00005000281) #11	ADAR (ENSEASG00005000290) #12	CHRNB2 (ENSEASG00005000300) #13	UBE2Q1 (ENSEASG00005000305) #14	ENSEASG00005000310 #15	SHE (ENSEASG00005031571) #16	IL6R (ENSEASG00005000344) #17	ATP8B2 (ENSEASG00005000350) #18	AQP10 (ENSEASG00005000379) #19	HAX1 (ENSEASG00005000433) #20	UBAP2L (ENSEASG00005000449) #21	C1orf43 (ENSEASG00005026219) #22	CFAP141 (ENSEASG00005033316)	TPM3 (ENSEASG00005000501)	NUP210L (ENSEASG00005000514) #23	ENSEASG00005038700	RPS27 (ENSEASG00005000650)	RAB13 (ENSEASG00005000683) #24	JTB (ENSEASG00005024586) #25	CREB3L4 (ENSEASG00005000725) #26	SLC39A1 (ENSEASG00005031953) #27	CRTC2 (ENSEASG00005000736) #28	DENND4B (ENSEASG00005000741) #29	GATAD2B (ENSEASG00005000752) #30	ENSEASG00005000764	SLC27A3 (ENSEASG00005000821) #32	INTS3 (ENSEASG00005000830) #33
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901	ENSGT01030000234542.b.a.a.a.b.b	ENSGT00390000009491.c #23	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989 #24	ENSGT00390000016136 #25	ENSGT00940000160806 #26	ENSGT00940000157062 #27	ENSGT00390000010652.B #28	ENSGT00940000160472 #29	ENSGT00390000004097.b #30	ENSGT00940000161073 #32	ENSGT00390000014184 #33	ENSGT00940000156223 #34	ENSGT00940000154879 #35
Megabat	MODERN SPECIES	1053												ATP8B2 (ENSPVAG00000002734) #18	AQP10 (ENSPVAG00000002732) #19	HAX1 (ENSPVAG00000002728) #20	UBAP2L (ENSPVAG00000002721) #21	C1orf43 (ENSPVAG00000002717) #22	ENSPVAG00000002715	TPM3 (ENSPVAG00000002713)
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901	ENSGT01030000234542.b.a.a.a.b.b	ENSGT00390000009491.c #23	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989 #24	ENSGT00390000016136 #25	ENSGT00940000160806 #26	ENSGT00940000157062 #27	ENSGT00390000010652.B #28	ENSGT00940000160472 #29	ENSGT00390000004097.b #30	ENSGT00940000161073 #32	ENSGT00390000014184 #33	ENSGT00940000156223 #34	ENSGT00940000154879 #35
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1088	SHC1 (ENSMLUG00000002396) #7	PYGO2 (ENSMLUG00000002389) #8	PBXIP1 (ENSMLUG00000002380) #9	PMVK (ENSMLUG00000002376) #10	KCNN3 (ENSMLUG00000002369) #11	ADAR (ENSMLUG00000017678) #12	CHRNB2 (ENSMLUG00000007541) #13	ENSMLUG00000023082	UBE2Q1 (ENSMLUG00000017677) #14	TDRD10 (ENSMLUG00000017676) #15	SHE (ENSMLUG00000005436) #16	ENSMLUG00000005427 #17	ATP8B2 (ENSMLUG00000014400) #18	HAX1 (ENSMLUG00000012947) #20	UBAP2L (ENSMLUG00000012931) #21	ENSMLUG00000013338 #22	CFAP141 (ENSMLUG00000013334)	TPM3 (ENSMLUG00000013331)	NUP210L (ENSMLUG00000013302) #23	ENSMLUG00000017188	RAB13 (ENSMLUG00000017186) #24	JTB (ENSMLUG00000013299) #25	CREB3L4 (ENSMLUG00000013291) #26	SLC39A1 (ENSMLUG00000013282) #27	CRTC2 (ENSMLUG00000013266) #28	DENND4B (ENSMLUG00000013245) #29	GATAD2B (ENSMLUG00000004859) #30	SLC27A3 (ENSMLUG00000001876) #32	INTS3 (ENSMLUG00000001857) #33	NPR1 (ENSMLUG00000001852) #34	ENSMLUG00000001847 #35
Microbat	MODERN SPECIES	995	MTCL1 (ENSMLUG00000002889)	RAB12 (ENSMLUG00000002883)	PTPRM (ENSMLUG00000016507)	LRRC30 (ENSMLUG00000004630)	LAMA1 (ENSMLUG00000004002)	ARHGAP28 (ENSMLUG00000005314)	ENSMLUG00000023508	L3MBTL4 (ENSMLUG00000002011)	EPB41L3 (ENSMLUG00000016125)	ZBTB14 (ENSMLUG00000016123)	ENSMLUG00000030528	DLGAP1 (ENSMLUG00000012142)	TGIF1 (ENSMLUG00000025199)	MYL12B (ENSMLUG00000005189)	MYOM1 (ENSMLUG00000003417)	ENSMLUG00000029548 #22	LPIN2 (ENSMLUG00000003403)	EMILIN2 (ENSMLUG00000003397)	SMCHD1 (ENSMLUG00000003378)	NDC80 (ENSMLUG00000003354)	METTL4 (ENSMLUG00000003351)
Greater horseshoe bat	MODERN SPECIES	14					KCNN3 (ENSRFEG00010019684) #11	ADAR (ENSRFEG00010019633) #12	CHRNB2 (ENSRFEG00010019597) #13	UBE2Q1 (ENSRFEG00010019550) #14	TDRD10 (ENSRFEG00010019390) #15	SHE (ENSRFEG00010019326) #16	IL6R (ENSRFEG00010019174) #17	ATP8B2 (ENSRFEG00010018802) #18	AQP10 (ENSRFEG00010018725) #19	HAX1 (ENSRFEG00010018647) #20	UBAP2L (ENSRFEG00010018473) #21	C1orf43 (ENSRFEG00010018213) #22	ENSRFEG00010017998	NUP210L (ENSRFEG00010016772) #23	ENSRFEG00010016684	RAB13 (ENSRFEG00010016602) #24	ENSRFEG00010016517 #25	CREB3L4 (ENSRFEG00010016292) #26	SLC39A1 (ENSRFEG00010016233) #27	CRTC2 (ENSRFEG00010016088) #28	DENND4B (ENSRFEG00010016057) #29	GATAD2B (ENSRFEG00010015979) #30	ENSRFEG00010015793	SLC27A3 (ENSRFEG00010015641) #32	INTS3 (ENSRFEG00010015572) #33	NPR1 (ENSRFEG00010015519) #34	SNAPIN (ENSRFEG00010015441) #36