Pecora	ANCESTRAL SPECIES	2	ENSGT00950000182870.a.a.b #9	ENSGT00530000063948.a	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #9	ENSGT00530000063948.a	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Siberian musk deer	MODERN SPECIES	1202	FLAD1 (ENSMMSG00000009964) #7	CKS1B (ENSMMSG00000010032) #8	SHC1 (ENSMMSG00000010085) #9	PBXIP1 (ENSMMSG00000010216) #10	PMVK (ENSMMSG00000010308) #11	KCNN3 (ENSMMSG00000010353) #12	ADAR (ENSMMSG00000010532) #13	CHRNB2 (ENSMMSG00000010601) #14	UBE2Q1 (ENSMMSG00000010661) #15	TDRD10 (ENSMMSG00000010722) #16	SHE (ENSMMSG00000010799) #17	IL6R (ENSMMSG00000010839) #18	ATP8B2 (ENSMMSG00000010900) #19	AQP10 (ENSMMSG00000011185) #20	UBAP2L (ENSMMSG00000011299) #21	C1orf43 (ENSMMSG00000011796) #22	CFAP141 (ENSMMSG00000011935) #23	ENSMMSG00000012023 #24	NUP210L (ENSMMSG00000012518) #25	ENSMMSG00000012901 #26	RAB13 (ENSMMSG00000012924) #27	JTB (ENSMMSG00000012947) #28	CREB3L4 (ENSMMSG00000012967) #29	SLC39A1 (ENSMMSG00000013005) #30	ENSMMSG00000013036 #31	DENND4B (ENSMMSG00000013175) #32	GATAD2B (ENSMMSG00000013259) #33	SLC27A3 (ENSMMSG00000013293) #34	INTS3 (ENSMMSG00000013366) #35	NPR1 (ENSMMSG00000013448) #36	ILF2 (ENSMMSG00000013509) #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #9	ENSGT00530000063948.a	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #9	ENSGT00530000063948.a	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
American bison	MODERN SPECIES	3022	PYGO2 (ENSBBBG00000003118)	PBXIP1 (ENSBBBG00000014024) #10	PMVK (ENSBBBG00000003100) #11	ENSBBBG00000003096	KCNN3 (ENSBBBG00000003095) #12	ADAR (ENSBBBG00000014003) #13	CHRNB2 (ENSBBBG00000013928) #14	UBE2Q1 (ENSBBBG00000002895) #15	TDRD10 (ENSBBBG00000013905) #16	SHE (ENSBBBG00000003009) #17	IL6R (ENSBBBG00000013889) #18	ATP8B2 (ENSBBBG00000002983) #19	ENSBBBG00000013824 #20	HAX1 (ENSBBBG00000013795)	UBAP2L (ENSBBBG00000008742) #21	C1orf43 (ENSBBBG00000013653) #22	CFAP141 (ENSBBBG00000013575) #23	ENSBBBG00000007596 #24	NUP210L (ENSBBBG00000002737) #25	ENSBBBG00000013268 ##26	RAB13 (ENSBBBG00000013260) #27	JTB (ENSBBBG00000002677) #28	CREB3L4 (ENSBBBG00000013242) #29	SLC39A1 (ENSBBBG00000013213) #30	CRTC2 (ENSBBBG00000013195) #31	DENND4B (ENSBBBG00000002661) #32	GATAD2B (ENSBBBG00000013108) #33	SLC27A3 (ENSBBBG00000013085) #34	NPR1 (ENSBBBG00000002615) #36	ILF2 (ENSBBBG00000013053) #37	SNAPIN (ENSBBBG00000013033)
Bos	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #9	ENSGT00530000063948.a	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879.r #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #9	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.a.b.a	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b ##26	ENSGT00390000004856.w.a.a.a	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Hybrid Bos Indicus	MODERN SPECIES	22	SHC1 (ENSBIXG00005010316) #9	PBXIP1 (ENSBIXG00005010243) #10	PMVK (ENSBIXG00005010164) #11	KCNN3 (ENSBIXG00005010117) #12	ADAR (ENSBIXG00005010010) #13	ENSBIXG00005006102	CHRNB2 (ENSBIXG00005009910) #14	UBE2Q1 (ENSBIXG00005005947) #15	TDRD10 (ENSBIXG00005009837) #16	SHE (ENSBIXG00005009819) #17	IL6R (ENSBIXG00005009808) #18	ATP8B2 (ENSBIXG00005000594) #19	ENSBIXG00005009609 #20	HAX1 (ENSBIXG00005009491)	UBAP2L (ENSBIXG00005009439) #21	C1orf43 (ENSBIXG00005009324) #22	CFAP141 (ENSBIXG00005006307) #23	TPM3 (ENSBIXG00005009222) ##24	NUP210L (ENSBIXG00005009088) #25	ENSBIXG00005008876 ##26	ENSBIXG00005000302	RAB13 (ENSBIXG00005000300) #27	JTB (ENSBIXG00005000281) #28	CREB3L4 (ENSBIXG00005008772) #29	SLC39A1 (ENSBIXG00005000255) #30	ENSBIXG00005008708 #31	DENND4B (ENSBIXG00005008651) #32	GATAD2B (ENSBIXG00005008595) #33	ENSBIXG00005000217	SLC27A3 (ENSBIXG00005008567) #34	INTS3 (ENSBIXG00005008552) #35
Cow	MODERN SPECIES	22	SHC1 (ENSBTAG00000019838) #9	PBXIP1 (ENSBTAG00000004552) #10	PMVK (ENSBTAG00000017819) #11	KCNN3 (ENSBTAG00000018249) #12	ADAR (ENSBTAG00000007519) #13	ENSBTAG00000048725	CHRNB2 (ENSBTAG00000007517) #14	UBE2Q1 (ENSBTAG00000007515) #15	TDRD10 (ENSBTAG00000011881) #16	SHE (ENSBTAG00000020542) #17	IL6R (ENSBTAG00000018474) #18	ATP8B2 (ENSBTAG00000005161) #19	AQP10 (ENSBTAG00000005149) #20	HAX1 (ENSBTAG00000013025)	UBAP2L (ENSBTAG00000004271) #21	C3H1orf43 (ENSBTAG00000020026) #22	CFAP141 (ENSBTAG00000033220) #23	TPM3 (ENSBTAG00000033217) ##24	NUP210L (ENSBTAG00000004987) #25	ENSBTAG00000024487	RPS27 (ENSBTAG00000013866) ##26	ENSBTAG00000018987	RAB13 (ENSBTAG00000017604) #27	JTB (ENSBTAG00000014694) #28	CREB3L4 (ENSBTAG00000014692) #29	SLC39A1 (ENSBTAG00000011284) #30	CRTC2 (ENSBTAG00000017942) #31	DENND4B (ENSBTAG00000018711) #32	GATAD2B (ENSBTAG00000006678) #33	SLC27A3 (ENSBTAG00000021862) #34	INTS3 (ENSBTAG00000006235) #35
Bos_a	ANCESTRAL SPECIES	27	ENSGT00950000182870.a.a.b #9	ENSGT00530000063948.a	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879.r #37
Domestic yak	MODERN SPECIES	22	PYGO2 (ENSBGRG00000009080)	PBXIP1 (ENSBGRG00000008978) #10	PMVK (ENSBGRG00000008918) #11	KCNN3 (ENSBGRG00000008715) #12	ENSBGRG00000008692	ADAR (ENSBGRG00000008643) #13	CHRNB2 (ENSBGRG00000008531) #14	UBE2Q1 (ENSBGRG00000008434) #15	TDRD10 (ENSBGRG00000008282) #16	SHE (ENSBGRG00000008191) #17	IL6R (ENSBGRG00000008129) #18	ATP8B2 (ENSBGRG00000007652) #19	ENSBGRG00000007543 #20	HAX1 (ENSBGRG00000007345)	UBAP2L (ENSBGRG00000011700) #21	C1orf43 (ENSBGRG00000010897) #22	CFAP141 (ENSBGRG00000010793) #23	ENSBGRG00000009632 #24	NUP210L (ENSBGRG00000008635) #25	ENSBGRG00000008529 ##26	RAB13 (ENSBGRG00000008324) #27	CREB3L4 (ENSBGRG00000008099) #29	JTB (ENSBGRG00000008039) #28	SLC39A1 (ENSBGRG00000008027) #30	CRTC2 (ENSBGRG00000007800) #31	DENND4B (ENSBGRG00000007443) #32	GATAD2B (ENSBGRG00000007224) #33	SLC27A3 (ENSBGRG00000007095) #34	INTS3 (ENSBGRG00000006876) #35	NPR1 (ENSBGRG00000006669) #36	ILF2 (ENSBGRG00000006500) #37
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1060												ENSBMUG00000011422	ZFHX4 (ENSBMUG00000011394)	PEX2 (ENSBMUG00000011354)	ENSBMUG00000011337	ENSBMUG00000011330 #22	ENSBMUG00000011309
Wild yak	MODERN SPECIES	3125															UBAP2L (ENSBMUG00000009662) #21	C1orf43 (ENSBMUG00000009598) #22	CFAP141 (ENSBMUG00000009584) #23	ENSBMUG00000009573 #24
Caprinae	ANCESTRAL SPECIES	2	ENSGT00950000182870.a.a.b #9	ENSGT00530000063948.a	ENSGT00940000162147 #10	ENSGT00390000014801 #11	ENSGT00950000182904.a.a.a #12	ENSGT00940000157243 #13	ENSGT00940000158417.b #14	ENSGT00940000160166 #15	ENSGT00390000006620 #16	ENSGT00940000159107 #17	ENSGT00940000161919 #18	ENSGT00940000160804 #19	ENSGT00940000162648 #20	ENSGT00390000018324	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Rambouillet Sheep	MODERN SPECIES		CKS1B (ENSOARG00020002417) #8	SHC1 (ENSOARG00020002360) #9	PYGO2 (ENSOARG00020002329)	PBXIP1 (ENSOARG00020002298) #10	PMVK (ENSOARG00020002284) #11	KCNN3 (ENSOARG00020002194) #12	ADAR (ENSOARG00020002136) #13	CHRNB2 (ENSOARG00020002109) #14	UBE2Q1 (ENSOARG00020002036) #15	TDRD10 (ENSOARG00020002015) #16	SHE (ENSOARG00020001998) #17	IL6R (ENSOARG00020001913) #18	ATP8B2 (ENSOARG00020001800) #19	HAX1 (ENSOARG00020001735)	UBAP2L (ENSOARG00020001679) #21	C1orf43 (ENSOARG00020001551) #22	C1orf189 (ENSOARG00020001521) #23	ENSOARG00020001415 #24	ENSOARG00020001381 #25	ENSOARG00020001344 #25	ENSOARG00020001330 ##26	RAB13 (ENSOARG00020001322) #27	JTB (ENSOARG00020001313) #28	CREB3L4 (ENSOARG00020001282) #29	SLC39A1 (ENSOARG00020001266) #30	CRTC2 (ENSOARG00020001237) #31	DENND4B (ENSOARG00020001161) #32	GATAD2B (ENSOARG00020001112) #33	SLC27A3 (ENSOARG00020001089) #34	INTS3 (ENSOARG00020001042) #35	NPR1 (ENSOARG00020000995) #36
Goat	DUPLICATION
Goat	MODERN SPECIES	5	ENSCHIG00000015884	UBE2W (ENSCHIG00000025248)	ELOC (ENSCHIG00000015198)	TMEM70 (ENSCHIG00000019890)	LY96 (ENSCHIG00000012530)	ENSCHIG00000017122	JPH1 (ENSCHIG00000017967)	GDAP1 (ENSCHIG00000006756)	PI15 (ENSCHIG00000016089)	CRISPLD1 (ENSCHIG00000016652)	HNF4G (ENSCHIG00000001150)	ENSCHIG00000020169	ZFHX4 (ENSCHIG00000017123)	PEX2 (ENSCHIG00000011681)	ENSCHIG00000024972	ENSCHIG00000012572 #22	ENSCHIG00000017797	ENSCHIG00000026486	PKIA (ENSCHIG00000022780)	ZC2HC1A (ENSCHIG00000022396)	IL7 (ENSCHIG00000013214)	ENSCHIG00000022803	STMN2 (ENSCHIG00000014257)	HEY1 (ENSCHIG00000021515)	MRPS28 (ENSCHIG00000018727)	TPD52 (ENSCHIG00000016090)	ZBTB10 (ENSCHIG00000008950)	ZNF704 (ENSCHIG00000009329)	PAG1 (ENSCHIG00000005882)	ENSCHIG00000022058	PMP2 (ENSCHIG00000017466)
Goat	MODERN SPECIES	22	SHC1 (ENSCHIG00000012851) #9	PYGO2 (ENSCHIG00000022839)	PBXIP1 (ENSCHIG00000012689) #10	PMVK (ENSCHIG00000024473) #11	KCNN3 (ENSCHIG00000018342) #12	ADAR (ENSCHIG00000017156) #13	CHRNB2 (ENSCHIG00000019561) #14	UBE2Q1 (ENSCHIG00000012187) #15	TDRD10 (ENSCHIG00000022402) #16	SHE (ENSCHIG00000012737) #17	IL6R (ENSCHIG00000012394) #18	ATP8B2 (ENSCHIG00000019010) #19	AQP10 (ENSCHIG00000023807) #20	HAX1 (ENSCHIG00000019434)	UBAP2L (ENSCHIG00000021701) #21	C1orf43 (ENSCHIG00000021619) #22	CFAP141 (ENSCHIG00000013219) #23	TPM3 (ENSCHIG00000017467) ##24	NUP210L (ENSCHIG00000022403) #25	ENSCHIG00000009267 ##26	RAB13 (ENSCHIG00000022271) #27	JTB (ENSCHIG00000021425) #28	CREB3L4 (ENSCHIG00000025478) #29	SLC39A1 (ENSCHIG00000011794) #30	CRTC2 (ENSCHIG00000023157) #31	DENND4B (ENSCHIG00000007112) #32	GATAD2B (ENSCHIG00000017439) #33	SLC27A3 (ENSCHIG00000022587) #34	INTS3 (ENSCHIG00000025770) #35	NPR1 (ENSCHIG00000023233) #36	ILF2 (ENSCHIG00000012048) #37
Yarkand deer	MODERN SPECIES	12	FLAD1 (ENSCHYG00000008080) #7	CKS1B (ENSCHYG00000008141) #8	SHC1 (ENSCHYG00000008207) #9	PYGO2 (ENSCHYG00000008470)	PBXIP1 (ENSCHYG00000008504) #10	PMVK (ENSCHYG00000008653) #11	KCNN3 (ENSCHYG00000008575) #12	ADAR (ENSCHYG00000008727) #13	CHRNB2 (ENSCHYG00000008890) #14	UBE2Q1 (ENSCHYG00000008978) #15	IL6R (ENSCHYG00000009161) #18	SHE (ENSCHYG00000009423) #17	ATP8B2 (ENSCHYG00000009554) #19	HAX1 (ENSCHYG00000010337)	UBAP2L (ENSCHYG00000010563) #21	C1orf43 (ENSCHYG00000011169) #22	ENSCHYG00000011554 #24	NUP210L (ENSCHYG00000013411) #25	ENSCHYG00000014516	ENSCHYG00000014536 ##26	RAB13 (ENSCHYG00000014586) #27	JTB (ENSCHYG00000014678) #28	CREB3L4 (ENSCHYG00000014741) #29	SLC39A1 (ENSCHYG00000014942) #30	CRTC2 (ENSCHYG00000015036) #31	DENND4B (ENSCHYG00000015567) #32	GATAD2B (ENSCHYG00000015975) #33	SLC27A3 (ENSCHYG00000016208) #34	INTS3 (ENSCHYG00000016404) #35	NPR1 (ENSCHYG00000017011) #36	ILF2 (ENSCHYG00000017299) #37