Gnathostomata	ANCESTRAL SPECIES																	ENSGT00510000047366 #22
Euteleostomi	ANCESTRAL SPECIES	409														ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00950000183065.B	ENSGT00940000154489.B	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000002049.c.a
Sarcopterygii	ANCESTRAL SPECIES	262														ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00950000183065.B	ENSGT00940000154489.B	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00940000166610	ENSGT00940000159348	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00390000018360
Tetrapoda	ANCESTRAL SPECIES	93					ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.C ##31	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Amniota	ANCESTRAL SPECIES	28	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Mammalia	ANCESTRAL SPECIES	25	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Theria	ANCESTRAL SPECIES	3	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35
Eutheria	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00770000121731
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Primates	ANCESTRAL SPECIES	7	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00390000014682.u.b	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00390000014682.u.b	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00390000014682.u.b	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00390000014682.u.b	ENSGT00940000161919 #17	ENSGT00950000183099.u.a.e.i.b.a.a.a	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s.d #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00390000014682.u.b	ENSGT00940000161919 #17	ENSGT00950000183099.u.a.e.i.b.a.a.a	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s.d #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Human	MODERN SPECIES		SHC1 (ENSG00000160691) #7	PYGO2 (ENSG00000163348) #8	PBXIP1 (ENSG00000163346) #9	PMVK (ENSG00000163344) #10	KCNN3 (ENSG00000143603) #11	ADAR (ENSG00000160710) #12	CHRNB2 (ENSG00000160716) #13	UBE2Q1 (ENSG00000160714) #14	TDRD10 (ENSG00000163239) #15	SHE (ENSG00000169291) #16	IL6R (ENSG00000160712) #17	ATP8B2 (ENSG00000143515) #18	AQP10 (ENSG00000143595) #19	HAX1 (ENSG00000143575) #20	UBAP2L (ENSG00000143569) #21	C1orf43 (ENSG00000143612) #22	CFAP141 (ENSG00000163263) #23	TPM3 (ENSG00000143549) #24	NUP210L (ENSG00000143552) #25	RPS27 (ENSG00000177954) #26	RAB13 (ENSG00000143545) #27	JTB (ENSG00000143543) #28	CREB3L4 (ENSG00000143578) #29	SLC39A1 (ENSG00000143570) #30	CRTC2 (ENSG00000160741) #31	DENND4B (ENSG00000198837) #32	GATAD2B (ENSG00000143614) #33	SLC27A3 (ENSG00000143554) #34	INTS3 (ENSG00000143624) #35	NPR1 (ENSG00000169418) #36	ILF2 (ENSG00000143621) #37
Pan	ANCESTRAL SPECIES		ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00390000014682.u.b	ENSGT00940000161919 #17	ENSGT00950000183099.u.a.e.i.b.a.a.a	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s.d #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Bonobo	MODERN SPECIES		PMVK (ENSPPAG00000041579) #10	KCNN3 (ENSPPAG00000039456) #11	ENSPPAG00000032031 #12	CHRNB2 (ENSPPAG00000031821) #13	ENSPPAG00000027726	UBE2Q1 (ENSPPAG00000031407) #14	TDRD10 (ENSPPAG00000025622) #15	SHE (ENSPPAG00000030773) #16	ENSPPAG00000028410	IL6R (ENSPPAG00000029063) #17	ENSPPAG00000030902	ATP8B2 (ENSPPAG00000034141) #18	AQP10 (ENSPPAG00000034579) #19	HAX1 (ENSPPAG00000028539) #20	UBAP2L (ENSPPAG00000013173) #21	ENSPPAG00000037317 #22	CFAP141 (ENSPPAG00000035012) #23	ENSPPAG00000034824 ##24	NUP210L (ENSPPAG00000024740) #25	RPS27 (ENSPPAG00000042044) #26	RAB13 (ENSPPAG00000028435) #27	JTB (ENSPPAG00000028370) #28	CREB3L4 (ENSPPAG00000021279) #29	SLC39A1 (ENSPPAG00000042626) #30	CRTC2 (ENSPPAG00000031646) #31	DENND4B (ENSPPAG00000005709) #32	ENSPPAG00000038251	GATAD2B (ENSPPAG00000039339) #33	SLC27A3 (ENSPPAG00000021818) #34	ENSPPAG00000008757	INTS3 (ENSPPAG00000034436) #35
Chimpanzee	MODERN SPECIES		PMVK (ENSPTRG00000001393) #10	KCNN3 (ENSPTRG00000001392) #11	ADAR (ENSPTRG00000022833) #12	CHRNB2 (ENSPTRG00000001389) #13	ENSPTRG00000043852	UBE2Q1 (ENSPTRG00000001387) #14	TDRD10 (ENSPTRG00000001386) #15	SHE (ENSPTRG00000001385) #16	ENSPTRG00000047720	IL6R (ENSPTRG00000001383) #17	ENSPTRG00000045345	ATP8B2 (ENSPTRG00000001382) #18	AQP10 (ENSPTRG00000001381) #19	HAX1 (ENSPTRG00000001380) #20	UBAP2L (ENSPTRG00000001379) #21	C1H1orf43 (ENSPTRG00000001378) #22	CFAP141 (ENSPTRG00000001377) #23	TPM3 (ENSPTRG00000001375) ##24	NUP210L (ENSPTRG00000001372) #25	RPS27 (ENSPTRG00000001371) #26	RAB13 (ENSPTRG00000001370) #27	JTB (ENSPTRG00000001369) #28	CREB3L4 (ENSPTRG00000001368) #29	SLC39A1 (ENSPTRG00000001367) #30	CRTC2 (ENSPTRG00000001366) #31	DENND4B (ENSPTRG00000001365) #32	ENSPTRG00000046146	GATAD2B (ENSPTRG00000001364) #33	SLC27A3 (ENSPTRG00000001362) #34	ENSPTRG00000041894	INTS3 (ENSPTRG00000001360) #35
Gorilla	MODERN SPECIES		PMVK (ENSGGOG00000012840) #10	KCNN3 (ENSGGOG00000012827) #11	ADAR (ENSGGOG00000007156) #12	CHRNB2 (ENSGGOG00000007153) #13	ENSGGOG00000037432	UBE2Q1 (ENSGGOG00000005627) #14	TDRD10 (ENSGGOG00000040815) #15	SHE (ENSGGOG00000015778) #16	ENSGGOG00000024279	IL6R (ENSGGOG00000000836) #17	RPSA (ENSGGOG00000024381)	ATP8B2 (ENSGGOG00000011901) #18	AQP10 (ENSGGOG00000011888) #19	HAX1 (ENSGGOG00000016771) #20	UBAP2L (ENSGGOG00000016753) #21	C1orf43 (ENSGGOG00000024361) #22	CFAP141 (ENSGGOG00000005688) #23	ENSGGOG00000000472 ##24	NUP210L (ENSGGOG00000014209) #25	ENSGGOG00000024810 ##26	RAB13 (ENSGGOG00000023693) #27	JTB (ENSGGOG00000005608) #28	CREB3L4 (ENSGGOG00000005601) #29	SLC39A1 (ENSGGOG00000038266) #30	CRTC2 (ENSGGOG00000023553) #31	DENND4B (ENSGGOG00000003845) #32	ENSGGOG00000036518	GATAD2B (ENSGGOG00000012553) #33	SLC27A3 (ENSGGOG00000003856) #34	ENSGGOG00000025172	INTS3 (ENSGGOG00000003835) #35
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES		SHC1 (ENSPPYG00000000769) #7	PYGO2 (ENSPPYG00000000770) #8	PBXIP1 (ENSPPYG00000000771) #9	PMVK (ENSPPYG00000000772) #10	KCNN3 (ENSPPYG00000000774) #11	ADAR (ENSPPYG00000000776) #12	CHRNB2 (ENSPPYG00000000777) #13	UBE2Q1 (ENSPPYG00000000778) #14	TDRD10 (ENSPPYG00000000779) #15	SHE (ENSPPYG00000000780) #16	IL6R (ENSPPYG00000000781) #17	ATP8B2 (ENSPPYG00000029424) #18	AQP10 (ENSPPYG00000000782) #19	HAX1 (ENSPPYG00000000783) #20	UBAP2L (ENSPPYG00000000784) #21	C1H1orf43 (ENSPPYG00000000785) #22	CFAP141 (ENSPPYG00000000786) #23	TPM3 (ENSPPYG00000000787) ##24	NUP210L (ENSPPYG00000000788) #25	RPS27 (ENSPPYG00000000789) #26	RAB13 (ENSPPYG00000000790) #27	JTB (ENSPPYG00000000791) #28	CREB3L4 (ENSPPYG00000000792) #29	SLC39A1 (ENSPPYG00000000793) #30	CRTC2 (ENSPPYG00000000794) #31	DENND4B (ENSPPYG00000000795) #32	GATAD2B (ENSPPYG00000029612) #33	SLC27A3 (ENSPPYG00000000796) #34	INTS3 (ENSPPYG00000000797) #35	NPR1 (ENSPPYG00000000799) #36	ILF2 (ENSPPYG00000000800) #37
Orangutan	MODERN SPECIES	3	CHFR (ENSPPYG00000005149)	GOLGA3 (ENSPPYG00000005148)	ANKLE2 (ENSPPYG00000005147)	ENSPPYG00000005145	PGAM5 (ENSPPYG00000041584)	POLE (ENSPPYG00000005143)	P2RX2 (ENSPPYG00000005142)	LRCOL1 (ENSPPYG00000038772)	FBRSL1 (ENSPPYG00000005141)	GALNT9 (ENSPPYG00000005137)	NOC4L (ENSPPYG00000005136)	DDX51 (ENSPPYG00000005135)	EP400 (ENSPPYG00000005133)	PUS1 (ENSPPYG00000005132)	ULK1 (ENSPPYG00000005131)	ENSPPYG00000040438 #22	MMP17 (ENSPPYG00000005130)	SFSWAP (ENSPPYG00000005129)	ENSPPYG00000005128	ENSPPYG00000005167	ADGRD1 (ENSPPYG00000005125)	RAN (ENSPPYG00000040933)	STX2 (ENSPPYG00000005123)	RIMBP2 (ENSPPYG00000005122)	PIWIL1 (ENSPPYG00000005121)	FZD10 (ENSPPYG00000005120)	TMEM132D (ENSPPYG00000005118)	GLT1D1 (ENSPPYG00000005117)	SLC15A4 (ENSPPYG00000005114)	TMEM132C (ENSPPYG00000005113)	ENSPPYG00000035945
Gibbon	MODERN SPECIES	2	PBXIP1 (ENSNLEG00000011504) #9	PMVK (ENSNLEG00000011489) #10	KCNN3 (ENSNLEG00000011487) #11	ADAR (ENSNLEG00000011458) #12	ENSNLEG00000011453 #13	ENSNLEG00000035677	UBE2Q1 (ENSNLEG00000011385) #14	TDRD10 (ENSNLEG00000011370) #15	SHE (ENSNLEG00000011358) #16	IL6R (ENSNLEG00000033170) #17	ENSNLEG00000029459	ATP8B2 (ENSNLEG00000011314) #18	AQP10 (ENSNLEG00000011305) #19	HAX1 (ENSNLEG00000011290) #20	UBAP2L (ENSNLEG00000011172) #21	C1orf43 (ENSNLEG00000031408) #22	CFAP141 (ENSNLEG00000027442) #23	ENSNLEG00000031965 ##24	NUP210L (ENSNLEG00000010922) #25	ENSNLEG00000033257 ##26	RAB13 (ENSNLEG00000028944) #27	JTB (ENSNLEG00000030030) #28	CREB3L4 (ENSNLEG00000010798) #29	SLC39A1 (ENSNLEG00000010768) #30	CRTC2 (ENSNLEG00000010708) #31	DENND4B (ENSNLEG00000010604) #32	ENSNLEG00000032924	GATAD2B (ENSNLEG00000010649) #33	ENSNLEG00000010644 #34	INTS3 (ENSNLEG00000010578) #35	NPR1 (ENSNLEG00000010560) #36
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00390000014682.u.b	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731
Rhinopithecus	ANCESTRAL SPECIES	43	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243.v #12	ENSGT00940000157243.u #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00390000014682.u.b	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00950000182891.a.a.b.a.b.b.a.b ##26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731
Golden snub-nosed monkey	MODERN SPECIES	1183	PBXIP1 (ENSRROG00000043067) #9	PMVK (ENSRROG00000036580) #10	KCNN3 (ENSRROG00000045093) #11	ADAR (ENSRROG00000033822) #12	CHRNB2 (ENSRROG00000033819) #13	ENSRROG00000032137	UBE2Q1 (ENSRROG00000036149) #14	TDRD10 (ENSRROG00000041498) #15	SHE (ENSRROG00000040424) #16	IL6R (ENSRROG00000037064) #17	ENSRROG00000034176	ATP8B2 (ENSRROG00000028829) #18	AQP10 (ENSRROG00000038831) #19	HAX1 (ENSRROG00000044702) #20	UBAP2L (ENSRROG00000035204) #21	C1orf43 (ENSRROG00000025641) #22	CFAP141 (ENSRROG00000044122) #23	ENSRROG00000030286 ##24	NUP210L (ENSRROG00000036739) #25	ENSRROG00000033349 ##26	RAB13 (ENSRROG00000036885) #27	JTB (ENSRROG00000040927) #28	CREB3L4 (ENSRROG00000013856) #29	SLC39A1 (ENSRROG00000037537) #30	CRTC2 (ENSRROG00000038896) #31	DENND4B (ENSRROG00000035662) #32	ENSRROG00000029949	GATAD2B (ENSRROG00000029454) #33	SLC27A3 (ENSRROG00000044338) #34	INTS3 (ENSRROG00000032561) #35	ENSRROG00000033474
Black snub-nosed monkey	MODERN SPECIES	156																C1orf43 (ENSRBIG00000033263) #22	CFAP141 (ENSRBIG00000035273) #23	TPM3 (ENSRBIG00000032904) #24
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00390000014682.u.b	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.k #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	12	SHC1 (ENSCSAG00000001975) #7	PYGO2 (ENSCSAG00000001971) #8	PBXIP1 (ENSCSAG00000001968) #9	PMVK (ENSCSAG00000001966) #10	KCNN3 (ENSCSAG00000001965) #11	ADAR (ENSCSAG00000001964) #12	CHRNB2 (ENSCSAG00000001961) #13	UBE2Q1 (ENSCSAG00000001959) #14	TDRD10 (ENSCSAG00000001953) #15	SHE (ENSCSAG00000001949) #16	IL6R (ENSCSAG00000001948) #17	ATP8B2 (ENSCSAG00000001941) #18	AQP10 (ENSCSAG00000001936) #19	HAX1 (ENSCSAG00000001933) #20	UBAP2L (ENSCSAG00000001929) #21	ENSCSAG00000001924 #22	CFAP141 (ENSCSAG00000001919) #23	TPM3 (ENSCSAG00000001917) ##24	NUP210L (ENSCSAG00000001910) #25	ENSCSAG00000001902 #26	JTB (ENSCSAG00000001901) #28	RAB13 (ENSCSAG00000001898) #27	CREB3L4 (ENSCSAG00000001896) #29	SLC39A1 (ENSCSAG00000001894) #30	CRTC2 (ENSCSAG00000001893) #31	DENND4B (ENSCSAG00000001886) #32	GATAD2B (ENSCSAG00000001881) #33	SLC27A3 (ENSCSAG00000001878) #34	INTS3 (ENSCSAG00000001872) #35	NPR1 (ENSCSAG00000001869) #36	ENSCSAG00000001866 #37
Vervet Monkey	MODERN SPECIES	2	CPM (ENSCSAG00000004238)	CPSF6 (ENSCSAG00000004232)	LYZ (ENSCSAG00000004225)	YEATS4 (ENSCSAG00000004221)	FRS2 (ENSCSAG00000004214)	CCT2 (ENSCSAG00000004209)	LRRC10 (ENSCSAG00000018905)	BEST3 (ENSCSAG00000004199)	RAB3IP (ENSCSAG00000004189)	ENSCSAG00000004183	CNOT2 (ENSCSAG00000004177)	KCNMB4 (ENSCSAG00000004174)	PTPRB (ENSCSAG00000004172)	PTPRR (ENSCSAG00000004155)	TSPAN8 (ENSCSAG00000004135)	ENSCSAG00000004130 #22	LGR5 (ENSCSAG00000004119)	ZFC3H1 (ENSCSAG00000004100)	THAP2 (ENSCSAG00000004092)	TMEM19 (ENSCSAG00000004088)	RAB21 (ENSCSAG00000004081)	TBC1D15 (ENSCSAG00000004078)	TRHDE (ENSCSAG00000004072)	ATXN7L3B (ENSCSAG00000018907)	KCNC2 (ENSCSAG00000004064)	CAPS2 (ENSCSAG00000004056)	GLIPR1L1 (ENSCSAG00000004045)	GLIPR1L2 (ENSCSAG00000004041)	GLIPR1 (ENSCSAG00000004038)	KRR1 (ENSCSAG00000004034)	ENSCSAG00000018909
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00910000147660	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00390000014682.u.b	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.k #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j.a	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731
Macaca	ANCESTRAL SPECIES		ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00910000147660	ENSGT00940000158417.b #13	ENSGT00910000147245	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00390000014682.u.b	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.k #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j.a	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Pig-tailed macaque	MODERN SPECIES	262	PMVK (ENSMNEG00000020431) #10	KCNN3 (ENSMNEG00000043088) #11	ENSMNEG00000037087	ADAR (ENSMNEG00000031204) #12	CHRNB2 (ENSMNEG00000029486) #13	ENSMNEG00000045004	UBE2Q1 (ENSMNEG00000031143) #14	TDRD10 (ENSMNEG00000044137) #15	SHE (ENSMNEG00000043363) #16	ENSMNEG00000029467	IL6R (ENSMNEG00000044637) #17	ATP8B2 (ENSMNEG00000037311) #18	AQP10 (ENSMNEG00000041320) #19	HAX1 (ENSMNEG00000041953) #20	UBAP2L (ENSMNEG00000032192) #21	C1orf43 (ENSMNEG00000040260) #22	CFAP141 (ENSMNEG00000036051) #23	TPM3 (ENSMNEG00000034023) #24	NUP210L (ENSMNEG00000030106) #25	RPS27 (ENSMNEG00000029459) #26	ENSMNEG00000028951 #27	JTB (ENSMNEG00000027313) #28	CREB3L4 (ENSMNEG00000042788) #29	ENSMNEG00000033731 #30	CRTC2 (ENSMNEG00000033388) #31	DENND4B (ENSMNEG00000044525) #32	ENSMNEG00000029449	GATAD2B (ENSMNEG00000029141) #33	SLC27A3 (ENSMNEG00000044807) #34	ENSMNEG00000038653	INTS3 (ENSMNEG00000042397) #35
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b.j #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.k #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Rhesus	MODERN SPECIES		SHC1 (ENSMMUG00000006581) #7	PYGO2 (ENSMMUG00000006579) #8	PBXIP1 (ENSMMUG00000006576) #9	PMVK (ENSMMUG00000052450) #10	KCNN3 (ENSMMUG00000017793) #11	ADAR (ENSMMUG00000016093) #12	CHRNB2 (ENSMMUG00000016089) #13	UBE2Q1 (ENSMMUG00000019547) #14	TDRD10 (ENSMMUG00000019545) #15	SHE (ENSMMUG00000022980) #16	IL6R (ENSMMUG00000022978) #17	ATP8B2 (ENSMMUG00000023364) #18	AQP10 (ENSMMUG00000023363) #19	HAX1 (ENSMMUG00000010814) #20	UBAP2L (ENSMMUG00000010810) #21	C1H1orf43 (ENSMMUG00000010808) #22	TPM3 (ENSMMUG00000010805) #24	NUP210L (ENSMMUG00000014952) #25	RPS27 (ENSMMUG00000018240) #26	RAB13 (ENSMMUG00000017586) #27	CREB3L4 (ENSMMUG00000005008) #29	JTB (ENSMMUG00000005010) #28	SLC39A1 (ENSMMUG00000005007) #30	CRTC2 (ENSMMUG00000005005) #31	DENND4B (ENSMMUG00000005002) #32	GATAD2B (ENSMMUG00000002696) #33	ENSMMUG00000049388	SLC27A3 (ENSMMUG00000019487) #34	INTS3 (ENSMMUG00000019482) #35	ENSMMUG00000044696	NPR1 (ENSMMUG00000008153) #36
Crab-eating macaque	MODERN SPECIES		PYGO2 (ENSMFAG00000045066) #8	ENSMFAG00000061019	ENSMFAG00000039855	PMVK (ENSMFAG00000032448) #10	KCNN3 (ENSMFAG00000040110) #11	ADAR (ENSMFAG00000003217) #12	CHRNB2 (ENSMFAG00000048751) #13	UBE2Q1 (ENSMFAG00000064720) #14	TDRD10 (ENSMFAG00000037009) #15	SHE (ENSMFAG00000032320) #16	IL6R (ENSMFAG00000038621) #17	ATP8B2 (ENSMFAG00000025147) #18	AQP10 (ENSMFAG00000004122) #19	HAX1 (ENSMFAG00000036731) #20	UBAP2L (ENSMFAG00000033622) #21	C1orf43 (ENSMFAG00000033673) #22	ENSMFAG00000034487 ##24	ENSMFAG00000057974	NUP210L (ENSMFAG00000036694) #25	ENSMFAG00000036388 ##26	RAB13 (ENSMFAG00000041018) #27	JTB (ENSMFAG00000042455) #28	CREB3L4 (ENSMFAG00000030893) #29	ENSMFAG00000036171 #30	CRTC2 (ENSMFAG00000046150) #31	DENND4B (ENSMFAG00000037492) #32	GATAD2B (ENSMFAG00000042345) #33	SLC27A3 (ENSMFAG00000042386) #34	INTS3 (ENSMFAG00000008338) #35	ENSMFAG00000035099	ENSMFAG00000054004
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00910000147660	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00390000014682.u.b	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000014471.j	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.k #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j.a	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731
Olive baboon	MODERN SPECIES		PBXIP1 (ENSPANG00000005125) #9	PMVK (ENSPANG00000041925) #10	KCNN3 (ENSPANG00000003114) #11	ADAR (ENSPANG00000008380) #12	CHRNB2 (ENSPANG00000011610) #13	UBE2Q1 (ENSPANG00000016454) #14	TDRD10 (ENSPANG00000023014) #15	SHE (ENSPANG00000022418) #16	IL6R (ENSPANG00000003884) #17	ENSPANG00000040683 #21	ENSPANG00000050990 #20	AQP10 (ENSPANG00000014081) #19	ATP8B2 (ENSPANG00000015836) #18	ENSPANG00000011611 #20	ENSPANG00000042713 #21	C1orf43 (ENSPANG00000021847) #22	CFAP141 (ENSPANG00000003885) #23	ENSPANG00000032917 ##24	ENSPANG00000041581	NUP210L (ENSPANG00000001760) #25	RPS27 (ENSPANG00000034821) #26	RAB13 (ENSPANG00000004479) #27	JTB (ENSPANG00000008316) #28	CREB3L4 (ENSPANG00000006363) #29	ENSPANG00000032614 #30	CRTC2 (ENSPANG00000014082) #31	DENND4B (ENSPANG00000003886) #32	GATAD2B (ENSPANG00000008972) #33	SLC27A3 (ENSPANG00000046183) #34	INTS3 (ENSPANG00000016455) #35	NPR1 (ENSPANG00000021848) #36
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00910000147660	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00390000014682.u.b	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.e #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000014471.j	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b.o ##26	ENSGT00940000159989.g #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.k #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00950000182920.b.a.b.a.b.j.a	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731
Drill	MODERN SPECIES	1343														HAX1 (ENSMLEG00000040818) #20	UBAP2L (ENSMLEG00000011898) #21	C1orf43 (ENSMLEG00000038029) #22	CFAP141 (ENSMLEG00000033358) #23	ENSMLEG00000040828 ##24	ENSMLEG00000029821	NUP210L (ENSMLEG00000012290) #25	ENSMLEG00000033189 ##26	ENSMLEG00000042247 #27	JTB (ENSMLEG00000041352) #28	CREB3L4 (ENSMLEG00000031038) #29	SLC39A1 (ENSMLEG00000030110) #30	CRTC2 (ENSMLEG00000032677) #31	DENND4B (ENSMLEG00000008709) #32	ENSMLEG00000031465	GATAD2B (ENSMLEG00000039050) #33	SLC27A3 (ENSMLEG00000040089) #34	ENSMLEG00000044217
Sooty mangabey	MODERN SPECIES	205	PYGO2 (ENSCATG00000033654) #8	PBXIP1 (ENSCATG00000038165) #9	PMVK (ENSCATG00000043628) #10	KCNN3 (ENSCATG00000036490) #11	ADAR (ENSCATG00000028528) #12	CHRNB2 (ENSCATG00000012048) #13	UBE2Q1 (ENSCATG00000035948) #14	TDRD10 (ENSCATG00000039790) #15	SHE (ENSCATG00000032686) #16	ENSCATG00000029642	IL6R (ENSCATG00000043994) #17	ATP8B2 (ENSCATG00000041069) #18	AQP10 (ENSCATG00000031636) #19	HAX1 (ENSCATG00000036999) #20	UBAP2L (ENSCATG00000042469) #21	C1orf43 (ENSCATG00000030081) #22	CFAP141 (ENSCATG00000033844) #23	ENSCATG00000040648 ##24	ENSCATG00000031235	NUP210L (ENSCATG00000038338) #25	ENSCATG00000044914 ##26	RAB13 (ENSCATG00000041779) #27	JTB (ENSCATG00000031036) #28	CREB3L4 (ENSCATG00000029955) #29	ENSCATG00000032701 #30	CRTC2 (ENSCATG00000037310) #31	DENND4B (ENSCATG00000030387) #32	ENSCATG00000043570	GATAD2B (ENSCATG00000022684) #33	SLC27A3 (ENSCATG00000044857) #34	ENSCATG00000044151
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.g #20	ENSGT00390000003453.b.b.k #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.s #26	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Mas night monkey	MODERN SPECIES	910														ENSANAG00000023845 #20	UBAP2L (ENSANAG00000032725) #21	C1orf43 (ENSANAG00000020121) #22	CFAP141 (ENSANAG00000025877) #23	ENSANAG00000026297 ##24	NUP210L (ENSANAG00000034116) #25	ENSANAG00000029042 #26	RAB13 (ENSANAG00000030247) #27	JTB (ENSANAG00000015894) #28	CREB3L4 (ENSANAG00000022154) #29	SLC39A1 (ENSANAG00000024275) #30	CRTC2 (ENSANAG00000021082) #31	DENND4B (ENSANAG00000035816) #32	GATAD2B (ENSANAG00000035590) #33	SLC27A3 (ENSANAG00000021298) #34	ENSANAG00000036113	INTS3 (ENSANAG00000037379) #35	NPR1 (ENSANAG00000027608) #36
Cebidae	ANCESTRAL SPECIES	12	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.g #20	ENSGT00390000003453.b.b.k #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.m #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00910000147660	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.g #20	ENSGT00390000003453.b.b.k #21	ENSGT00390000003453.b.b.l #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.m #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Capuchin	MODERN SPECIES	491	PYGO2 (ENSCCAG00000033040) #8	PBXIP1 (ENSCCAG00000021101) #9	PMVK (ENSCCAG00000026930) #10	KCNN3 (ENSCCAG00000035868) #11	ENSCCAG00000021035	ADAR (ENSCCAG00000028498) #12	CHRNB2 (ENSCCAG00000033456) #13	UBE2Q1 (ENSCCAG00000020761) #14	TDRD10 (ENSCCAG00000021454) #15	SHE (ENSCCAG00000023561) #16	IL6R (ENSCCAG00000035881) #17	ATP8B2 (ENSCCAG00000030333) #18	AQP10 (ENSCCAG00000023287) #19	HAX1 (ENSCCAG00000027745) #20	UBAP2L (ENSCCAG00000023226) #21	C1orf43 (ENSCCAG00000031953) #22	CFAP141 (ENSCCAG00000024957) #23	ENSCCAG00000029868 ##24	NUP210L (ENSCCAG00000028092) #25	RPS27 (ENSCCAG00000013768) ##26	RAB13 (ENSCCAG00000028502) #27	JTB (ENSCCAG00000029820) #28	CREB3L4 (ENSCCAG00000031305) #29	ENSCCAG00000034088 #30	CRTC2 (ENSCCAG00000033905) #31	DENND4B (ENSCCAG00000023936) #32	GATAD2B (ENSCCAG00000036020) #33	SLC27A3 (ENSCCAG00000027756) #34	ENSCCAG00000015470	INTS3 (ENSCCAG00000024830) #35	ENSCCAG00000030361
Bolivian squirrel monkey	MODERN SPECIES	194												ATP8B2 (ENSSBOG00000034424) #18	AQP10 (ENSSBOG00000011977) #19	HAX1 (ENSSBOG00000033341) #20	UBAP2L (ENSSBOG00000021575) #21	C1orf43 (ENSSBOG00000023168) #22	CFAP141 (ENSSBOG00000014715) #23	TPM3 (ENSSBOG00000023490) #24	NUP210L (ENSSBOG00000033835) #25	ENSSBOG00000022231 ##26	RAB13 (ENSSBOG00000020342) #27	JTB (ENSSBOG00000021943) #28	CREB3L4 (ENSSBOG00000035500) #29	ENSSBOG00000018639 #30	CRTC2 (ENSSBOG00000035017) #31	DENND4B (ENSSBOG00000028638) #32	GATAD2B (ENSSBOG00000030783) #33	SLC27A3 (ENSSBOG00000022512) #34	INTS3 (ENSSBOG00000027353) #35	ENSSBOG00000031241	NPR1 (ENSSBOG00000029904) #36
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	3	MRLN (ENSCJAG00000006871)	ANK3 (ENSCJAG00000006912)	ENSCJAG00000021801	CDK1 (ENSCJAG00000007001)	ENSCJAG00000076738	RHOBTB1 (ENSCJAG00000007026)	ENSCJAG00000082605	TMEM26 (ENSCJAG00000007057)	CABCOCO1 (ENSCJAG00000007069)	ARID5B (ENSCJAG00000051725)	RTKN2 (ENSCJAG00000007086)	ZNF365 (ENSCJAG00000007112)	ADO (ENSCJAG00000042988)	EGR2 (ENSCJAG00000062137)	ENSCJAG00000043457	ENSCJAG00000067977 #22	ENSCJAG00000074200	ENSCJAG00000081956	JMJD1C (ENSCJAG00000007163)	REEP3 (ENSCJAG00000038962)	ENSCJAG00000071549	ENSCJAG00000075808	LRRTM3 (ENSCJAG00000019359)	CTNNA3 (ENSCJAG00000019354)	ENSCJAG00000074615	DNAJC12 (ENSCJAG00000019345)	SIRT1 (ENSCJAG00000019318)	HERC4 (ENSCJAG00000019252)	MYPN (ENSCJAG00000019196)	ATOH7 (ENSCJAG00000045520)	PBLD (ENSCJAG00000019181)
Marmoset	MODERN SPECIES	9	PYGO2 (ENSCJAG00000040555) #8	PBXIP1 (ENSCJAG00000009346) #9	PMVK (ENSCJAG00000045283) #10	ENSCJAG00000074840	KCNN3 (ENSCJAG00000009390) #11	ADAR (ENSCJAG00000009410) #12	CHRNB2 (ENSCJAG00000009523) #13	UBE2Q1 (ENSCJAG00000009446) #14	TDRD10 (ENSCJAG00000009543) #15	SHE (ENSCJAG00000009551) #16	IL6R (ENSCJAG00000009567) #17	ATP8B2 (ENSCJAG00000009583) #18	AQP10 (ENSCJAG00000009657) #19	HAX1 (ENSCJAG00000009660) #20	UBAP2L (ENSCJAG00000009677) #21	C1orf43 (ENSCJAG00000009722) #22	CFAP141 (ENSCJAG00000009736) #23	TPM3 (ENSCJAG00000009747) #24	NUP210L (ENSCJAG00000009801) #25	ENSCJAG00000009929 ##26	RAB13 (ENSCJAG00000009933) #27	JTB (ENSCJAG00000009973) #28	CREB3L4 (ENSCJAG00000009978) #29	SLC39A1 (ENSCJAG00000010006) #30	CRTC2 (ENSCJAG00000010045) #31	DENND4B (ENSCJAG00000010062) #32	ENSCJAG00000078615	ENSCJAG00000076924	ENSCJAG00000077150	GATAD2B (ENSCJAG00000010131) #33	SLC27A3 (ENSCJAG00000010147) #34
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	4859														ENSTSYG00000035534 #20	UBAP2L (ENSTSYG00000012782) #21	CUNH1orf43 (ENSTSYG00000036266) #22	CFAP141 (ENSTSYG00000034804) #23	TPM3 (ENSTSYG00000029863) ##24	NUP210L (ENSTSYG00000008554) #25	RPS27 (ENSTSYG00000037181) #26
Tarsier	MODERN SPECIES	6850																ENSTSYG00000035630 #22	LEPR (ENSTSYG00000011941)
Strepsirrhini	DUPLICATION
Strepsirrhini	DUPLICATION
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00510000047366.kb.a #22
Bushbaby	MODERN SPECIES	262	MRPL35 (ENSOGAG00000004048)	REEP1 (ENSOGAG00000004049)	KDM3A (ENSOGAG00000011445)	ENSOGAG00000030818	RNF103 (ENSOGAG00000034488)	ENSOGAG00000027674	ENSOGAG00000033216	RMND5A (ENSOGAG00000007229)	CD8A (ENSOGAG00000007233)	ENSOGAG00000007240	ENSOGAG00000014484	KRCC1 (ENSOGAG00000016183)	SMYD1 (ENSOGAG00000016185)	FABP1 (ENSOGAG00000033714)	THNSL2 (ENSOGAG00000016194)	ENSOGAG00000024873 #22	ENSOGAG00000029215	TEX37 (ENSOGAG00000024721)	EIF2AK3 (ENSOGAG00000008231)	RPIA (ENSOGAG00000034178)	IGKC (ENSOGAG00000024766)	ENSOGAG00000017218	IGKV4-1 (ENSOGAG00000017219)	ENSOGAG00000033016	ENSOGAG00000032108	ENSOGAG00000033208	ENSOGAG00000027925	ENSOGAG00000026798	ENSOGAG00000024940	ENSOGAG00000031332	ENSOGAG00000010223
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00510000047366.kb.a #22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00510000047366.kb.a #22
Coquerels sifaka	MODERN SPECIES	697	MIS18A (ENSPCOG00000024896)	HUNK (ENSPCOG00000007940)	ENSPCOG00000022163	SCAF4 (ENSPCOG00000018710)	ENSPCOG00000019554	TIAM1 (ENSPCOG00000026538)	KRTAP19-8 (ENSPCOG00000014486)	KRTAP6-1 (ENSPCOG00000020897)	KRTAP19-7 (ENSPCOG00000026533)	ENSPCOG00000021232	ENSPCOG00000026332	ENSPCOG00000023297	ENSPCOG00000008176	GRIK1 (ENSPCOG00000025437)	BACH1 (ENSPCOG00000022879)	ENSPCOG00000021857 #22	MAP3K7CL (ENSPCOG00000022793)	CCT8 (ENSPCOG00000025167)	USP16 (ENSPCOG00000015373)	RWDD2B (ENSPCOG00000028447)	LTN1 (ENSPCOG00000025757)	N6AMT1 (ENSPCOG00000027720)
Strepsirrhini	ANCESTRAL SPECIES	115																ENSGT00510000047366.kb.b #22	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.b ##24
Bushbaby	MODERN SPECIES	359															UBAP2L (ENSOGAG00000012014) #21	ENSOGAG00000012008 #22	ENSOGAG00000025133 ##24	NUP210L (ENSOGAG00000003072) #25	ENSOGAG00000003071 ##26	RAB13 (ENSOGAG00000016969) #27	CREB3L4 (ENSOGAG00000016958) #29	SLC39A1 (ENSOGAG00000031108) #30	CRTC2 (ENSOGAG00000029515) #31	DENND4B (ENSOGAG00000029879) #32	GATAD2B (ENSOGAG00000004606) #33	SLC27A3 (ENSOGAG00000001089) #34	INTS3 (ENSOGAG00000001080) #35	NPR1 (ENSOGAG00000030073) #36	SNAPIN (ENSOGAG00000006068)	CHTOP (ENSOGAG00000010674)	ENSOGAG00000010672
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.lb #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.lb #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.o #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Mouse lemur	MODERN SPECIES	11	FLAD1 (ENSMICG00000007946)	CKS1B (ENSMICG00000046559)	SHC1 (ENSMICG00000007933) #7	PYGO2 (ENSMICG00000047317) #8	PBXIP1 (ENSMICG00000028704) #9	PMVK (ENSMICG00000042375) #10	KCNN3 (ENSMICG00000001441) #11	ADAR (ENSMICG00000001431) #12	CHRNB2 (ENSMICG00000031010) #13	UBE2Q1 (ENSMICG00000001427) #14	TDRD10 (ENSMICG00000001419) #15	ATP8B2 (ENSMICG00000003529) #18	AQP10 (ENSMICG00000003522) #19	ENSMICG00000010414 #20	UBAP2L (ENSMICG00000010402) #21	C1orf43 (ENSMICG00000033180) #22	CFAP141 (ENSMICG00000010401) #23	ENSMICG00000010389 ##24	NUP210L (ENSMICG00000010354) #25	ENSMICG00000010351 ##26	RAB13 (ENSMICG00000010340) #27	JTB (ENSMICG00000010337) #28	CREB3L4 (ENSMICG00000010316) #29	ENSMICG00000037483 #30	CRTC2 (ENSMICG00000010302) #31	DENND4B (ENSMICG00000010282) #32	GATAD2B (ENSMICG00000008874) #33	SLC27A3 (ENSMICG00000008852) #34	INTS3 (ENSMICG00000008832) #35	NPR1 (ENSMICG00000013747) #36	ENSMICG00000013730 #37
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.lb #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062.o #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Greater bamboo lemur	MODERN SPECIES	170	SHC1 (ENSPSMG00000022647) #7	PYGO2 (ENSPSMG00000022630) #8	PBXIP1 (ENSPSMG00000022621) #9	PMVK (ENSPSMG00000022597) #10	KCNN3 (ENSPSMG00000022581) #11	ADAR (ENSPSMG00000022560) #12	CHRNB2 (ENSPSMG00000022533) #13	UBE2Q1 (ENSPSMG00000022505) #14	TDRD10 (ENSPSMG00000022501) #15	SHE (ENSPSMG00000022479) #16	IL6R (ENSPSMG00000022470) #17	ATP8B2 (ENSPSMG00000022457) #18	AQP10 (ENSPSMG00000022420) #19	HAX1 (ENSPSMG00000022390) #20	UBAP2L (ENSPSMG00000022338) #21	C1orf43 (ENSPSMG00000022185) #22	CFAP141 (ENSPSMG00000022110) #23	TPM3 (ENSPSMG00000021762) #24	NUP210L (ENSPSMG00000021418) #25	RPS27 (ENSPSMG00000021337) #26	RAB13 (ENSPSMG00000021328) #27	JTB (ENSPSMG00000021290) #28	CREB3L4 (ENSPSMG00000021280) #29	SLC39A1 (ENSPSMG00000021265) #30	CRTC2 (ENSPSMG00000021234) #31	DENND4B (ENSPSMG00000021181) #32	GATAD2B (ENSPSMG00000021109) #33	ENSPSMG00000021059	SLC27A3 (ENSPSMG00000021038) #34	INTS3 (ENSPSMG00000021006) #35	NPR1 (ENSPSMG00000020930) #36
Coquerels sifaka	MODERN SPECIES	750	SHC1 (ENSPCOG00000028600) #7	PYGO2 (ENSPCOG00000025073) #8	PBXIP1 (ENSPCOG00000025592) #9	PMVK (ENSPCOG00000028344) #10	KCNN3 (ENSPCOG00000015107) #11	ADAR (ENSPCOG00000017300) #12	CHRNB2 (ENSPCOG00000020562) #13	UBE2Q1 (ENSPCOG00000019908) #14	TDRD10 (ENSPCOG00000027913) #15	SHE (ENSPCOG00000024371) #16	IL6R (ENSPCOG00000027249) #17	ATP8B2 (ENSPCOG00000018835) #18	AQP10 (ENSPCOG00000024103) #19	HAX1 (ENSPCOG00000014330) #20	UBAP2L (ENSPCOG00000017176) #21	C1orf43 (ENSPCOG00000011508) #22	CFAP141 (ENSPCOG00000011055) #23	TPM3 (ENSPCOG00000012036) #24	NUP210L (ENSPCOG00000012674) #25	ENSPCOG00000012419 ##26	RAB13 (ENSPCOG00000012189) #27	JTB (ENSPCOG00000012486) #28	CREB3L4 (ENSPCOG00000019702) #29	SLC39A1 (ENSPCOG00000014811) #30	CRTC2 (ENSPCOG00000021940) #31	DENND4B (ENSPCOG00000021491) #32	GATAD2B (ENSPCOG00000015814) #33	SLC27A3 (ENSPCOG00000024101) #34	INTS3 (ENSPCOG00000022153) #35	ENSPCOG00000019296	ENSPCOG00000023996
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Tree shrew	MODERN SPECIES	5090														HAX1 (ENSTBEG00000014445) #20	UBAP2L (ENSTBEG00000014009) #21	C1orf43 (ENSTBEG00000013866) #22	CFAP141 (ENSTBEG00000013818) #23	ENSTBEG00000013764 #24	NUP210L (ENSTBEG00000012857) #25	RAB13 (ENSTBEG00000012734) #27	JTB (ENSTBEG00000012646) #28	CREB3L4 (ENSTBEG00000012480) #29	SLC39A1 (ENSTBEG00000012409) #30	CRTC2 (ENSTBEG00000012222) #31	DENND4B (ENSTBEG00000011792) #32
Glires	ANCESTRAL SPECIES		ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37	ENSGT00390000008274	ENSGT00390000002869
Pika	MODERN SPECIES	2747																C1orf43 (ENSOPRG00000007244) #22	CFAP141 (ENSOPRG00000007238) #23
Rabbit	MODERN SPECIES	4	CKS1B (ENSOCUG00000016204)	SHC1 (ENSOCUG00000016188) #7	PYGO2 (ENSOCUG00000016170) #8	ENSOCUG00000033095	PMVK (ENSOCUG00000016158) #10	KCNN3 (ENSOCUG00000013552) #11	ADAR (ENSOCUG00000008544) #12	UBE2Q1 (ENSOCUG00000003709) #14	SHE (ENSOCUG00000016365) #16	IL6R (ENSOCUG00000016354) #17	ENSOCUG00000016320 #18	ENSOCUG00000032271 #18	AQP10 (ENSOCUG00000029059) #19	ENSOCUG00000032263 #20	UBAP2L (ENSOCUG00000023943) #21	C1orf43 (ENSOCUG00000011821) #22	NUP210L (ENSOCUG00000011794) #25	ENSOCUG00000022459	ENSOCUG00000005113	ENSOCUG00000030717	ENSOCUG00000011792 ##26	RAB13 (ENSOCUG00000006286) #27	ENSOCUG00000011788 #28	CREB3L4 (ENSOCUG00000011784) #29	SLC39A1 (ENSOCUG00000003045) #30	CRTC2 (ENSOCUG00000015733) #31	ENSOCUG00000033615 #31	DENND4B (ENSOCUG00000011771) #32	GATAD2B (ENSOCUG00000008135) #33	SLC27A3 (ENSOCUG00000005457) #34	INTS3 (ENSOCUG00000005436) #35
Rodentia	ANCESTRAL SPECIES		ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000157062 #30	ENSGT00940000160806 #29	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005017948	AGTR2 (ENSSVLG00005017968)	ENSSVLG00005017980	PLS3 (ENSSVLG00005018046)	ENSSVLG00005018340	ENSSVLG00005018369	LRCH2 (ENSSVLG00005018464)	IL13RA2 (ENSSVLG00005018862)	ENSSVLG00005018928	HTR2C (ENSSVLG00005018984)	ENSSVLG00005019077	ENSSVLG00005019126	ENSSVLG00005019177	ENSSVLG00005019228	ENSSVLG00005019275	ENSSVLG00005019330 #22	AMOT (ENSSVLG00005013525)	LHFPL1 (ENSSVLG00005013627)	ENSSVLG00005013685	ENSSVLG00005013733	RTL4 (ENSSVLG00005013764)	TRPC5 (ENSSVLG00005013851)	TRPC5OS (ENSSVLG00005013928)	ENSSVLG00005013966	ENSSVLG00005014045	ALG13 (ENSSVLG00005014257)	ENSSVLG00005014968	SERTM2 (ENSSVLG00005015020)	DCX (ENSSVLG00005015055)	CAPN6 (ENSSVLG00005015179)	PAK3 (ENSSVLG00005015386)
Eurasian red squirrel	MODERN SPECIES		CKS1B (ENSSVLG00005015746)	SHC1 (ENSSVLG00005015630) #7	PYGO2 (ENSSVLG00005015559) #8	PBXIP1 (ENSSVLG00005015475) #9	PMVK (ENSSVLG00005015430) #10	KCNN3 (ENSSVLG00005015083) #11	ADAR (ENSSVLG00005014799) #12	CHRNB2 (ENSSVLG00005014638) #13	UBE2Q1 (ENSSVLG00005014507) #14	SHE (ENSSVLG00005014400) #16	IL6R (ENSSVLG00005014351) #17	ATP8B2 (ENSSVLG00005014269) #18	AQP10 (ENSSVLG00005014066) #19	ENSSVLG00005013980 #20	UBAP2L (ENSSVLG00005013768) #21	C1orf43 (ENSSVLG00005013372) #22	CFAP141 (ENSSVLG00005013145) #23	ENSSVLG00005012292 ##24	ENSSVLG00005011990 #25	ENSSVLG00005011949	ENSSVLG00005011935	ENSSVLG00005011875	RPS27 (ENSSVLG00005011813) #26	ENSSVLG00005011603 #25	ENSSVLG00005011534 ##26	RAB13 (ENSSVLG00005011364) #27	ENSSVLG00005011332	CREB3L4 (ENSSVLG00005011183) #29	SLC39A1 (ENSSVLG00005011031) #30	CRTC2 (ENSSVLG00005010882) #31	DENND4B (ENSSVLG00005010822) #32
Marmotini	ANCESTRAL SPECIES	33	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136.j #28	ENSGT00940000160806.b #29	ENSGT00940000160806.a.a #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136.j #28	ENSGT00940000160806.a.a #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	35																ENSSTOG00000033786 #22
Squirrel	MODERN SPECIES	282									DSC2 (ENSSTOG00000010425)	DSC1 (ENSSTOG00000010444)	DSG1 (ENSSTOG00000010463)	DSG4 (ENSSTOG00000010492)	DSG2 (ENSSTOG00000007528)	TTR (ENSSTOG00000007541)	B4GALT6 (ENSSTOG00000010911)	ENSSTOG00000033707 #22	TRAPPC8 (ENSSTOG00000012656)	RNF125 (ENSSTOG00000022555)	RNF138 (ENSSTOG00000002293)	MEP1B (ENSSTOG00000002298)	GAREM1 (ENSSTOG00000002308)	KLHL14 (ENSSTOG00000016263)
Squirrel	MODERN SPECIES	33																ENSSTOG00000031916 #22
Squirrel	MODERN SPECIES	180	CKS1B (ENSSTOG00000031911)	SHC1 (ENSSTOG00000000050) #7	PYGO2 (ENSSTOG00000000053) #8	PBXIP1 (ENSSTOG00000026941) #9	PMVK (ENSSTOG00000003639) #10	KCNN3 (ENSSTOG00000026978) #11	ADAR (ENSSTOG00000014151) #12	CHRNB2 (ENSSTOG00000026442) #13	UBE2Q1 (ENSSTOG00000003400) #14	SHE (ENSSTOG00000009301) #16	IL6R (ENSSTOG00000009285) #17	ATP8B2 (ENSSTOG00000014623) #18	AQP10 (ENSSTOG00000014619) #19	HAX1 (ENSSTOG00000014614) #20	UBAP2L (ENSSTOG00000014589) #21	ENSSTOG00000029834 #22	CFAP141 (ENSSTOG00000014580) #23	ENSSTOG00000023525 ##24	NUP210L (ENSSTOG00000014542) #25	ENSSTOG00000032447 ##26	RAB13 (ENSSTOG00000011222) #27	ENSSTOG00000014348 #28	CREB3L4 (ENSSTOG00000014516) #29	SLC39A1 (ENSSTOG00000001572) #30	CRTC2 (ENSSTOG00000027219) #31	DENND4B (ENSSTOG00000010539) #32	GATAD2B (ENSSTOG00000005407) #33	SLC27A3 (ENSSTOG00000020359) #34	INTS3 (ENSSTOG00000000670) #35	NPR1 (ENSSTOG00000022009) #36	ENSSTOG00000000667 #37
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	3	EPC2 (ENSUPAG00010004529)	KIF5C (ENSUPAG00010004496)	LYPD6B (ENSUPAG00010004479)	LYPD6 (ENSUPAG00010004464)	MMADHC (ENSUPAG00010004432)	RND3 (ENSUPAG00010004413)	ENSUPAG00010004396	ENSUPAG00010004388	RBM43 (ENSUPAG00010004382)	NMI (ENSUPAG00010004358)	TNFAIP6 (ENSUPAG00010004346)	RIF1 (ENSUPAG00010002377)	NEB (ENSUPAG00010001764)	ENSUPAG00010001737	CACNB4 (ENSUPAG00010001584)	ENSUPAG00010001568 #22	STAM2 (ENSUPAG00010001468)	FMNL2 (ENSUPAG00010000658)	PRPF40A (ENSUPAG00010000254)	ARL6IP6 (ENSUPAG00010000239)
Arctic ground squirrel	MODERN SPECIES	566														HAX1 (ENSUPAG00010013917) #20	UBAP2L (ENSUPAG00010013962) #21	ENSUPAG00010014744 #22	CFAP141 (ENSUPAG00010014782) #23	TPM3 (ENSUPAG00010014794) #24	NUP210L (ENSUPAG00010014983) #25	RPS27 (ENSUPAG00010015110) #26	RAB13 (ENSUPAG00010015124) #27	JTB (ENSUPAG00010015137) #28	ENSUPAG00010015154 #29	SLC39A1 (ENSUPAG00010015164) #30	CRTC2 (ENSUPAG00010015170) #31	DENND4B (ENSUPAG00010015204) #32	GATAD2B (ENSUPAG00010015294) #33	SLC27A3 (ENSUPAG00010015351) #34	INTS3 (ENSUPAG00010015361) #35	NPR1 (ENSUPAG00010015422) #36	ILF2 (ENSUPAG00010015468) #37
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	5	MMADHC (ENSMMMG00000021733)	RND3 (ENSMMMG00000021746)	ENSMMMG00000021752	ENSMMMG00000021771	ENSMMMG00000021776	ENSMMMG00000021801	RBM43 (ENSMMMG00000021824)	NMI (ENSMMMG00000021825)	ENSMMMG00000021827	TNFAIP6 (ENSMMMG00000021834)	RIF1 (ENSMMMG00000021851)	NEB (ENSMMMG00000021921)	ENSMMMG00000022061	CACNB4 (ENSMMMG00000022074)	STAM2 (ENSMMMG00000022104)	ENSMMMG00000022120 #22	FMNL2 (ENSMMMG00000022132)	PRPF40A (ENSMMMG00000022291)	ARL6IP6 (ENSMMMG00000022320)	ENSMMMG00000022335	ENSMMMG00000022338	ENSMMMG00000022342	ENSMMMG00000022354	KCNJ3 (ENSMMMG00000022368)	NR4A2 (ENSMMMG00000022388)	GPD2 (ENSMMMG00000022395)	ENSMMMG00000022423	ENSMMMG00000022427	ERMN (ENSMMMG00000022432)	CYTIP (ENSMMMG00000022447)	ACVR1C (ENSMMMG00000022458)
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000017079 #7	PYGO2 (ENSMMMG00000017091) #8	PBXIP1 (ENSMMMG00000017093) #9	ENSMMMG00000017115 #10	KCNN3 (ENSMMMG00000017128) #11	ENSMMMG00000017139	ADAR (ENSMMMG00000017145) #12	CHRNB2 (ENSMMMG00000017189) #13	UBE2Q1 (ENSMMMG00000017197) #14	SHE (ENSMMMG00000017208) #16	IL6R (ENSMMMG00000017215) #17	ATP8B2 (ENSMMMG00000017287) #18	AQP10 (ENSMMMG00000017359) #19	HAX1 (ENSMMMG00000017363) #20	UBAP2L (ENSMMMG00000017401) #21	ENSMMMG00000017556 #22	TPM3 (ENSMMMG00000017605) #24	ENSMMMG00000017625 #25	ENSMMMG00000017632 #25	ENSMMMG00000017652 ##26	RAB13 (ENSMMMG00000017661) #27	ENSMMMG00000017675 #28	ENSMMMG00000017685 #29	ENSMMMG00000017690 #29	SLC39A1 (ENSMMMG00000017691) #30	CRTC2 (ENSMMMG00000017698) #31	DENND4B (ENSMMMG00000017709) #32	GATAD2B (ENSMMMG00000017734) #33	SLC27A3 (ENSMMMG00000017745) #34	INTS3 (ENSMMMG00000017913) #35	NPR1 (ENSMMMG00000017990) #36
Alpin marmot	MODERN SPECIES	12	YOD1 (ENSMMMG00000003106)	PFKFB2 (ENSMMMG00000002404)	C4BPB (ENSMMMG00000002378)	C4BPA (ENSMMMG00000002369)	ENSMMMG00000002134	ENSMMMG00000002084	ENSMMMG00000002053	ENSMMMG00000001930	CR2 (ENSMMMG00000001798)	ENSMMMG00000001760	ENSMMMG00000001729	ENSMMMG00000001683	ENSMMMG00000001666	CD34 (ENSMMMG00000001505)	PLXNA2 (ENSMMMG00000001414)	ENSMMMG00000001390 #22	CAMK1G (ENSMMMG00000001301)	LAMB3 (ENSMMMG00000001176)	G0S2 (ENSMMMG00000001164)	HSD11B1 (ENSMMMG00000001148)	TRAF3IP3 (ENSMMMG00000001053)	C1orf74 (ENSMMMG00000001035)	IRF6 (ENSMMMG00000001014)	UTP25 (ENSMMMG00000000999)	SYT14 (ENSMMMG00000000958)	SERTAD4 (ENSMMMG00000000936)	HHAT (ENSMMMG00000000889)	KCNH1 (ENSMMMG00000000821)	RCOR3 (ENSMMMG00000000787)	TRAF5 (ENSMMMG00000000707)	RD3 (ENSMMMG00000000691)
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989.f #27	ENSGT00950000182891.a.a.b.a.b.b.a ##26	ENSGT00940000159989.e #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	10	PYGO2 (ENSHGLG00000007163) #8	PBXIP1 (ENSHGLG00000008141) #9	PMVK (ENSHGLG00000009156) #10	KCNN3 (ENSHGLG00000015775) #11	ENSHGLG00000021095	ADAR (ENSHGLG00000017910) #12	CHRNB2 (ENSHGLG00000007150) #13	ENSHGLG00000007304 #14	ENSHGLG00000035218 #16	IL6R (ENSHGLG00000032250) #17	ATP8B2 (ENSHGLG00000018554) #18	AQP10 (ENSHGLG00000018126) #19	ENSHGLG00000018499	HAX1 (ENSHGLG00000018827) #20	UBAP2L (ENSHGLG00000009352) #21	ENSHGLG00000043186 #22	CFAP141 (ENSHGLG00000034346) #23	ENSHGLG00000035415 ##24	ENSHGLG00000010502 #24	NUP210L (ENSHGLG00000039681) #25	RPS27 (ENSHGLG00000007748) #26	RAB13 (ENSHGLG00000008749) #27	JTB (ENSHGLG00000040053) #28	CREB3L4 (ENSHGLG00000033275) #29	SLC39A1 (ENSHGLG00000007034) #30	CRTC2 (ENSHGLG00000008041) #31	DENND4B (ENSHGLG00000006184) #32	ENSHGLG00000015467 #33	ENSHGLG00000034978	ENSHGLG00000038740	ENSHGLG00000046497
Naked mole-rat female	MODERN SPECIES	27	HPSE (ENSHGLG00000018930)	HELQ (ENSHGLG00000019137)	ENSHGLG00000036989	ENSHGLG00000036220	ENSHGLG00000037131	Gpat3 (ENSHGLG00000003421)	ENSHGLG00000043322	ENSHGLG00000045281	ENSHGLG00000037327	ENSHGLG00000035706	ENSHGLG00000004204	ENSHGLG00000004589	CDS1 (ENSHGLG00000049384)	WDFY3 (ENSHGLG00000002966)	ENSHGLG00000041678	ENSHGLG00000000796 #22	ENSHGLG00000000768	ENSHGLG00000019846	ENSHGLG00000001024	ENSHGLG00000000901	ENSHGLG00000046052	ENSHGLG00000034553	ENSHGLG00000019806	ENSHGLG00000005605	ENSHGLG00000001145	SLC10A6 (ENSHGLG00000001287)	ENSHGLG00000001308	ENSHGLG00000045541	AFF1 (ENSHGLG00000001384)	ENSHGLG00000008155	ENSHGLG00000032120
Naked mole-rat female	MODERN SPECIES	23	DHX57 (ENSHGLG00000015212)	ENSHGLG00000005484	ARHGEF33 (ENSHGLG00000007085)	SOS1 (ENSHGLG00000008560)	ENSHGLG00000045652	CDKL4 (ENSHGLG00000044538)	MAP4K3 (ENSHGLG00000018638)	ENSHGLG00000037179	ENSHGLG00000038781	ENSHGLG00000051001	ENSHGLG00000019145	ENSHGLG00000046900	ENSHGLG00000042007	ENSHGLG00000015079	ENSHGLG00000015808	ENSHGLG00000044522 #22	ENSHGLG00000038868	ENSHGLG00000046799	ENSHGLG00000039075	ENSHGLG00000007285	ENSHGLG00000009421	COX7A2L (ENSHGLG00000050207)	KCNG3 (ENSHGLG00000050660)	ENSHGLG00000032595	Mta3 (ENSHGLG00000013809)	ENSHGLG00000033761	HAAO (ENSHGLG00000042032)	ZFP36L2 (ENSHGLG00000035572)	THADA (ENSHGLG00000005656)	PLEKHH2 (ENSHGLG00000007771)	ENSHGLG00000012261
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989.f #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Guinea pig	MODERN SPECIES	10	PYGO2 (ENSCPOG00000038298) #8	PBXIP1 (ENSCPOG00000005112) #9	PMVK (ENSCPOG00000006036) #10	KCNN3 (ENSCPOG00000015718) #11	ENSCPOG00000020156 #13	ADAR (ENSCPOG00000005463) #12	ENSCPOG00000013155 #13	UBE2Q1 (ENSCPOG00000001472) #14	SHE (ENSCPOG00000001163) #16	IL6R (ENSCPOG00000033327) #17	ENSCPOG00000037176	ATP8B2 (ENSCPOG00000014022) #18	AQP10 (ENSCPOG00000039313) #19	HAX1 (ENSCPOG00000007307) #20	ENSCPOG00000021439 #21	C1orf43 (ENSCPOG00000006131) #22	CFAP141 (ENSCPOG00000039253) #23	TPM3 (ENSCPOG00000032186) #24	ENSCPOG00000007264 #25	ENSCPOG00000024660 ##26	RAB13 (ENSCPOG00000011491) #27	JTB (ENSCPOG00000012906) #28	CREB3L4 (ENSCPOG00000034503) #29	SLC39A1 (ENSCPOG00000039162) #30	CRTC2 (ENSCPOG00000012884) #31	DENND4B (ENSCPOG00000012910) #32	GATAD2B (ENSCPOG00000010326) #33	SLC27A3 (ENSCPOG00000009466) #34	INTS3 (ENSCPOG00000009450) #35	NPR1 (ENSCPOG00000025084) #36	ILF2 (ENSCPOG00000005835) #37
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989.f #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	252	SHC1 (ENSCLAG00000005022) #7	PYGO2 (ENSCLAG00000004985) #8	PBXIP1 (ENSCLAG00000004914) #9	PMVK (ENSCLAG00000004787) #10	KCNN3 (ENSCLAG00000004330) #11	ADAR (ENSCLAG00000005402) #12	CHRNB2 (ENSCLAG00000005132) #13	UBE2Q1 (ENSCLAG00000005048) #14	SHE (ENSCLAG00000004987) #16	ENSCLAG00000004750	IL6R (ENSCLAG00000004093) #17	ATP8B2 (ENSCLAG00000003593) #18	AQP10 (ENSCLAG00000004886) #19	ENSCLAG00000004829 #20	UBAP2L (ENSCLAG00000003903) #21	ENSCLAG00000012981 #22	CFAP141 (ENSCLAG00000011799) #23	TPM3 (ENSCLAG00000010440) #24	NUP210L (ENSCLAG00000007281) #25	RPS27 (ENSCLAG00000006809) #26	RAB13 (ENSCLAG00000006603) #27	JTB (ENSCLAG00000009842) #28	CREB3L4 (ENSCLAG00000008566) #29	SLC39A1 (ENSCLAG00000008243) #30	CRTC2 (ENSCLAG00000007860) #31	DENND4B (ENSCLAG00000005313) #32	GATAD2B (ENSCLAG00000004814) #33	SLC27A3 (ENSCLAG00000004445) #34	INTS3 (ENSCLAG00000003620) #35	NPR1 (ENSCLAG00000004130) #36	SNAPIN (ENSCLAG00000003233)
Long-tailed chinchilla	MODERN SPECIES	58																ENSCLAG00000000055 #22
Degu	DUPLICATION
Degu	MODERN SPECIES	73	CKS1B (ENSODEG00000011374)	SHC1 (ENSODEG00000011945) #7	PYGO2 (ENSODEG00000012415) #8	PBXIP1 (ENSODEG00000011532) #9	PMVK (ENSODEG00000011395) #10	KCNN3 (ENSODEG00000011444) #11	ADAR (ENSODEG00000011111) #12	CHRNB2 (ENSODEG00000011916) #13	ENSODEG00000020162	UBE2Q1 (ENSODEG00000012607) #14	SHE (ENSODEG00000010544) #16	ATP8B2 (ENSODEG00000010646) #18	ENSODEG00000010731 #20	ENSODEG00000011367 #21	ENSODEG00000012117 #21	ENSODEG00000011467 #22	CFAP141 (ENSODEG00000011475) #23	TPM3 (ENSODEG00000011815) #24	NUP210L (ENSODEG00000011746) #25	ENSODEG00000012394 ##26	ENSODEG00000012634 #27	JTB (ENSODEG00000012805) #28	CREB3L4 (ENSODEG00000013013) #29	SLC39A1 (ENSODEG00000012305) #30	CRTC2 (ENSODEG00000012430) #31	DENND4B (ENSODEG00000013675) #32	ENSODEG00000019967	GATAD2B (ENSODEG00000012298) #33	SLC27A3 (ENSODEG00000012359) #34	INTS3 (ENSODEG00000012581) #35	NPR1 (ENSODEG00000013147) #36
Degu	MODERN SPECIES	84	ENSODEG00000019376	ENSODEG00000008690	ENSODEG00000019255	ENSODEG00000019220	BTD (ENSODEG00000006036)	DNASE1L3 (ENSODEG00000006359)	ENSODEG00000006739	FLNB (ENSODEG00000008526)	SLMAP (ENSODEG00000005798)	ENSODEG00000006496	ENSODEG00000019341	DENND6A (ENSODEG00000005908)	ENSODEG00000006837	PDE12 (ENSODEG00000006268)	ENSODEG00000006477	ENSODEG00000009106 #22	ENSODEG00000009554	ENSODEG00000019205	ENSODEG00000006288	ASB14 (ENSODEG00000005874)	APPL1 (ENSODEG00000005753)	ENSODEG00000008648	ENSODEG00000009148	ENSODEG00000007374	ARHGEF3 (ENSODEG00000007707)	ENSODEG00000007518	ENSODEG00000008069	TASOR (ENSODEG00000006527)	ENSODEG00000007286	CCDC66 (ENSODEG00000010465)	ERC2 (ENSODEG00000006199)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000023152	Shc1 (ENSDORG00000003763) #7	Pbxip1 (ENSDORG00000003761) #9	Pmvk (ENSDORG00000026581) #10	Kcnn3 (ENSDORG00000027750) #11	Adar (ENSDORG00000007813) #12	Chrnb2 (ENSDORG00000007810) #13	Ube2q1 (ENSDORG00000007808) #14	She (ENSDORG00000007804) #16	Il6ra (ENSDORG00000014779) #17	Atp8b2 (ENSDORG00000008652) #18	ENSDORG00000008649 #19	ENSDORG00000012587 #20	ENSDORG00000027500 #21	ENSDORG00000027148 #21	4933434E20Rik (ENSDORG00000005454) #22	Cfap141 (ENSDORG00000029641) #23	ENSDORG00000006208 ##24	ENSDORG00000023795 ##26	Nup210l (ENSDORG00000001594) #25	ENSDORG00000001593 ##26	Rab13 (ENSDORG00000001591) #27	Jtb (ENSDORG00000028390) #28	Creb3l4 (ENSDORG00000011769) #29	Slc39a1 (ENSDORG00000027137) #30	Crtc2 (ENSDORG00000011766) #31	Dennd4b (ENSDORG00000011762) #32	ENSDORG00000028146	Gatad2b (ENSDORG00000013431) #33	Slc27a3 (ENSDORG00000001476) #34	Ints3 (ENSDORG00000001484) #35
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Lesser Egyptian jerboa	MODERN SPECIES	141	Cks1b (ENSJJAG00000000355)	Shc1 (ENSJJAG00000014070) #7	Pygo2 (ENSJJAG00000011008) #8	Pbxip1 (ENSJJAG00000011330) #9	Pmvk (ENSJJAG00000013837) #10	Kcnn3 (ENSJJAG00000007766) #11	Adar (ENSJJAG00000022056) #12	Chrnb2 (ENSJJAG00000020105) #13	Ube2q1 (ENSJJAG00000011804) #14	She (ENSJJAG00000009909) #16	ENSJJAG00000023975 #18	ENSJJAG00000023267 #18	ENSJJAG00000023866 #19	Hax1 (ENSJJAG00000020120) #20	Ubap2l (ENSJJAG00000021524) #21	4933434E20Rik (ENSJJAG00000004208) #22	Cfap141 (ENSJJAG00000015562) #23	Tpm3 (ENSJJAG00000017959) ##24	Nup210l (ENSJJAG00000010321) #25	ENSJJAG00000019594 ##26	Rab13 (ENSJJAG00000010575) #27	Jtb (ENSJJAG00000002705) #28	Creb3l4 (ENSJJAG00000010946) #29	Slc39a1 (ENSJJAG00000022954) #30	Crtc2 (ENSJJAG00000009825) #31	Dennd4b (ENSJJAG00000002150) #32	Gatad2b (ENSJJAG00000024336) #33	Slc27a3 (ENSJJAG00000024298) #34	Ints3 (ENSJJAG00000019885) #35	Npr1 (ENSJJAG00000021087) #36	ENSJJAG00000023269 #37
Muroidea	ANCESTRAL SPECIES	6	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Flad1 (ENSNGAG00000019467)	Cks1b (ENSNGAG00000021059)	Shc1 (ENSNGAG00000000764) #7	Pygo2 (ENSNGAG00000001061) #8	Pbxip1 (ENSNGAG00000001561) #9	Pmvk (ENSNGAG00000009702) #10	Kcnn3 (ENSNGAG00000012664) #11	Adar (ENSNGAG00000016696) #12	Chrnb2 (ENSNGAG00000007991) #13	Ube2q1 (ENSNGAG00000010765) #14	She (ENSNGAG00000011383) #16	Il6ra (ENSNGAG00000013306) #17	Atp8b2 (ENSNGAG00000016615) #18	Hax1 (ENSNGAG00000000939) #20	ENSNGAG00000022133 #21	4933434E20Rik (ENSNGAG00000023898) #22	Cfap141 (ENSNGAG00000006314) #23	Tpm3 (ENSNGAG00000022391) ##24	Nup210l (ENSNGAG00000005884) #25	Rps27 (ENSNGAG00000005823) ##26	Rab13 (ENSNGAG00000010309) #27	ENSNGAG00000011293 #28	Creb3l4 (ENSNGAG00000013822) #29	ENSNGAG00000017607 #30	Crtc2 (ENSNGAG00000018956) #31	Dennd4b (ENSNGAG00000021805) #32	Gatad2b (ENSNGAG00000020296) #33	Slc27a3 (ENSNGAG00000021835) #34	Ints3 (ENSNGAG00000023917) #35	Npr1 (ENSNGAG00000011425) #36	Ilf2 (ENSNGAG00000012145) #37
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.y #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Murinae	ANCESTRAL SPECIES	5	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.y #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Rat	DUPLICATION
Rat	MODERN SPECIES	11	Cks1b (ENSRNOG00000042561)	Shc1 (ENSRNOG00000020657) #7	Pygo2 (ENSRNOG00000020663) #8	Pbxip1 (ENSRNOG00000020673) #9	Pmvk (ENSRNOG00000020696) #10	Kcnn3 (ENSRNOG00000020706) #11	Adar (ENSRNOG00000020744) #12	Chrnb2 (ENSRNOG00000020778) #13	Ube2q1 (ENSRNOG00000020791) #14	She (ENSRNOG00000020797) #16	Il6r (ENSRNOG00000020811) #17	Atp8b2 (ENSRNOG00000020822) #18	Aqp10 (ENSRNOG00000069352) #19	Hax1 (ENSRNOG00000045647) #20	Ubap2l (ENSRNOG00000017990) #21	Ns5atp4 (ENSRNOG00000017758) #22	Cfap141 (ENSRNOG00000037406) #23	Tpm3 (ENSRNOG00000017441) #24	Nup210l (ENSRNOG00000055790) #25	Rps27 (ENSRNOG00000016961) #26	Rab13 (ENSRNOG00000016733) #27	Jtb (ENSRNOG00000016379) #28	Creb3l4 (ENSRNOG00000023493) #29	Slc39a1 (ENSRNOG00000059463) #30	Dennd4b (ENSRNOG00000022373) #32	Crtc2 (ENSRNOG00000056337) #31	Gatad2b (ENSRNOG00000015553) #33	Slc27a3 (ENSRNOG00000015421) #34	Ints3 (ENSRNOG00000015153) #35	ENSRNOG00000063260	Npr1 (ENSRNOG00000014684) #36
Rat	MODERN SPECIES	13	Cacnb4 (ENSRNOG00000007666)	Arl5a (ENSRNOG00000006839)	AABR07052125.1 (ENSRNOG00000006829)	Neb (ENSRNOG00000006783)	Rif1 (ENSRNOG00000054901)	ENSRNOG00000071171	Tnfaip6 (ENSRNOG00000050792)	Nmi (ENSRNOG00000027502)	Tas2r134 (ENSRNOG00000027510)	Rnd3 (ENSRNOG00000004624)	LOC499796 (ENSRNOG00000028112)	Mmadhc (ENSRNOG00000004740)	Hnrnpa1-ps20 (ENSRNOG00000005951)	LOC120101547 (ENSRNOG00000048601)	Lypd6 (ENSRNOG00000068044)	Ns5atp4-ps3 (ENSRNOG00000027533) #22	Lypd6b (ENSRNOG00000004614)	Kif5c (ENSRNOG00000004680)	Epc2 (ENSRNOG00000029447)	Mbd5 (ENSRNOG00000027596)	Orc4 (ENSRNOG00000005021)	Acvr2a (ENSRNOG00000005334)	ENSRNOG00000062624	ENSRNOG00000067798	Zeb2 (ENSRNOG00000004677)	Gtdc1 (ENSRNOG00000031038)	Arhgap15 (ENSRNOG00000031168)	Kynu (ENSRNOG00000029993)	Lrp1b (ENSRNOG00000030243)	LOC100362366 (ENSRNOG00000028690)	AABR07051831.1 (ENSRNOG00000015854)
Mus	ANCESTRAL SPECIES	7	ENSGT00390000007266	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.y #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Shrew mouse	MODERN SPECIES	17	Lenep (MGP_PahariEiJ_G0026652)	Cks1b (MGP_PahariEiJ_G0026653)	Shc1 (MGP_PahariEiJ_G0026654) #7	Pygo2 (MGP_PahariEiJ_G0026655) #8	Pbxip1 (MGP_PahariEiJ_G0026656) #9	Pmvk (MGP_PahariEiJ_G0026657) #10	Kcnn3 (MGP_PahariEiJ_G0026658) #11	Adar (MGP_PahariEiJ_G0026659) #12	MGP_PahariEiJ_G0026660 #13	Ube2q1 (MGP_PahariEiJ_G0026661) #14	She (MGP_PahariEiJ_G0026662) #16	Il6ra (MGP_PahariEiJ_G0026663) #17	Atp8b2 (MGP_PahariEiJ_G0026664) #18	MGP_PahariEiJ_G0026665 #20	Ubap2l (MGP_PahariEiJ_G0026666) #21	MGP_PahariEiJ_G0026667 #22	MGP_PahariEiJ_G0026668 #24	Nup210l (MGP_PahariEiJ_G0026669) #25	MGP_PahariEiJ_G0026670 #26	Rab13 (MGP_PahariEiJ_G0026671) #27	Jtb (MGP_PahariEiJ_G0026672) #28	Creb3l4 (MGP_PahariEiJ_G0026673) #29	Slc39a1 (MGP_PahariEiJ_G0026674) #30	Crtc2 (MGP_PahariEiJ_G0026675) #31	Dennd4b (MGP_PahariEiJ_G0026676) #32	Gatad2b (MGP_PahariEiJ_G0026677) #33	Slc27a3 (MGP_PahariEiJ_G0026678) #34	Ints3 (MGP_PahariEiJ_G0026679) #35	MGP_PahariEiJ_G0026680	Ilf2 (MGP_PahariEiJ_G0026681) #37	Snapin (MGP_PahariEiJ_G0026682)
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000007266	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.y #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000007266	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.a ##26	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Mouse	MODERN SPECIES	12	Flad1 (ENSMUSG00000042642)	Cks1b (ENSMUSG00000028044)	Shc1 (ENSMUSG00000042626) #7	Pygo2 (ENSMUSG00000047824) #8	Pbxip1 (ENSMUSG00000042613) #9	Pmvk (ENSMUSG00000027952) #10	Kcnn3 (ENSMUSG00000000794) #11	Adar (ENSMUSG00000027951) #12	Chrnb2 (ENSMUSG00000027950) #13	Ube2q1 (ENSMUSG00000042572) #14	She (ENSMUSG00000046280) #16	Il6ra (ENSMUSG00000027947) #17	Atp8b2 (ENSMUSG00000060671) #18	Hax1 (ENSMUSG00000027944) #20	Ubap2l (ENSMUSG00000042520) #21	4933434E20Rik (ENSMUSG00000027942) #22	Cfap141 (ENSMUSG00000118506) #23	Tpm3 (ENSMUSG00000027940) ##24	Nup210l (ENSMUSG00000027939) #25	Rps27 (ENSMUSG00000090733) ##26	Rab13 (ENSMUSG00000027935) #27	Jtb (ENSMUSG00000027937) #28	Creb3l4 (ENSMUSG00000027938) #29	Slc39a1 (ENSMUSG00000052310) #30	Crtc2 (ENSMUSG00000027936) #31	Dennd4b (ENSMUSG00000042404) #32	Gatad2b (ENSMUSG00000042390) #33	Slc27a3 (ENSMUSG00000027932) #34	Ints3 (ENSMUSG00000027933) #35	Npr1 (ENSMUSG00000027931) #36	Ilf2 (ENSMUSG00000001016) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000007266	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Steppe mouse	MODERN SPECIES	3110	ENSMSIG00000026965	Shc1 (ENSMSIG00000026983) #7	Pygo2 (ENSMSIG00000027012) #8	Pbxip1 (ENSMSIG00000027031) #9	Pmvk (ENSMSIG00000027047) #10	Kcnn3 (ENSMSIG00000027072) #11	Adar (ENSMSIG00000027077) #12	ENSMSIG00000027130 #13	ENSMSIG00000027143	Ube2q1 (ENSMSIG00000027148) #14	She (ENSMSIG00000027176) #16	Il6ra (ENSMSIG00000027228) #17	Atp8b2 (ENSMSIG00000027245) #18	Hax1 (ENSMSIG00000027302) #20	Ubap2l (ENSMSIG00000027332) #21	4933434E20Rik (ENSMSIG00000027489) #22	Cfap141 (ENSMSIG00000027585) #23	Tpm3 (ENSMSIG00000027597) ##24	Nup210l (ENSMSIG00000027707) #25	ENSMSIG00000027767 ##26	ENSMSIG00000027788 #27	Jtb (ENSMSIG00000027805) #28	Creb3l4 (ENSMSIG00000027822) #29	ENSMSIG00000027832 #31	Dennd4b (ENSMSIG00000027848) #32	Gatad2b (ENSMSIG00000000207) #33	Slc27a3 (ENSMSIG00000000282) #34	Ints3 (ENSMSIG00000000363) #35	Npr1 (ENSMSIG00000000933) #36	Ilf2 (ENSMSIG00000001090) #37	Snapin (ENSMSIG00000001126)
Ryukyu mouse	MODERN SPECIES	12	Flad1 (MGP_CAROLIEiJ_G0025208)	MGP_CAROLIEiJ_G0025209	Shc1 (MGP_CAROLIEiJ_G0025210) #7	Pygo2 (MGP_CAROLIEiJ_G0025211) #8	Pbxip1 (MGP_CAROLIEiJ_G0025212) #9	Pmvk (MGP_CAROLIEiJ_G0025213) #10	Kcnn3 (MGP_CAROLIEiJ_G0025214) #11	Adar (MGP_CAROLIEiJ_G0025215) #12	MGP_CAROLIEiJ_G0025216 #13	Ube2q1 (MGP_CAROLIEiJ_G0025217) #14	She (MGP_CAROLIEiJ_G0025218) #16	Il6ra (MGP_CAROLIEiJ_G0025219) #17	Atp8b2 (MGP_CAROLIEiJ_G0025220) #18	Hax1 (MGP_CAROLIEiJ_G0025221) #20	Ubap2l (MGP_CAROLIEiJ_G0025222) #21	MGP_CAROLIEiJ_G0025223 #22	Tpm3-rs7 (MGP_CAROLIEiJ_G0025224) #24	Nup210l (MGP_CAROLIEiJ_G0025225) #25	MGP_CAROLIEiJ_G0025226 #26	Rab13 (MGP_CAROLIEiJ_G0025227) #27	Jtb (MGP_CAROLIEiJ_G0025228) #28	Creb3l4 (MGP_CAROLIEiJ_G0025229) #29	Slc39a1 (MGP_CAROLIEiJ_G0025230) #30	Crtc2 (MGP_CAROLIEiJ_G0025231) #31	Dennd4b (MGP_CAROLIEiJ_G0025232) #32	Gatad2b (MGP_CAROLIEiJ_G0025233) #33	Slc27a3 (MGP_CAROLIEiJ_G0025234) #34	Ints3 (MGP_CAROLIEiJ_G0025235) #35	Npr1 (MGP_CAROLIEiJ_G0025236) #36	Ilf2 (MGP_CAROLIEiJ_G0025237) #37	Snapin (MGP_CAROLIEiJ_G0025238)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.y #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00390000007266	ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.y #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Prairie vole	MODERN SPECIES	99	Flad1 (ENSMOCG00000021020)	Cks1b (ENSMOCG00000018757)	ENSMOCG00000021109 #7	ENSMOCG00000013620 #8	Pbxip1 (ENSMOCG00000014289) #9	Pmvk (ENSMOCG00000019772) #10	Kcnn3 (ENSMOCG00000000459) #11	Adar (ENSMOCG00000018547) #12	Chrnb2 (ENSMOCG00000020688) #13	Ube2q1 (ENSMOCG00000007891) #14	She (ENSMOCG00000000437) #16	Il6ra (ENSMOCG00000000552) #17	Atp8b2 (ENSMOCG00000000840) #18	Hax1 (ENSMOCG00000003057) #20	Ubap2l (ENSMOCG00000015398) #21	4933434E20Rik (ENSMOCG00000016695) #22	Cfap141 (ENSMOCG00000002986) #23	Tpm3 (ENSMOCG00000017543) ##24	Nup210l (ENSMOCG00000005456) #25	ENSMOCG00000002329 ##26	Rab13 (ENSMOCG00000021448) #27	Jtb (ENSMOCG00000009598) #28	Creb3l4 (ENSMOCG00000016484) #29	ENSMOCG00000014154 #30	Crtc2 (ENSMOCG00000012139) #31	Dennd4b (ENSMOCG00000016756) #32	Gatad2b (ENSMOCG00000014982) #33	Slc27a3 (ENSMOCG00000018654) #34	Ints3 (ENSMOCG00000013737) #35	Npr1 (ENSMOCG00000003109) #36	Ilf2 (ENSMOCG00000016112) #37
Northern American deer mouse	MODERN SPECIES	19	Shc1 (ENSPEMG00000011338) #7	Pygo2 (ENSPEMG00000031296) #8	Pbxip1 (ENSPEMG00000008556) #9	Pmvk (ENSPEMG00000011929) #10	Kcnn3 (ENSPEMG00000019108) #11	ENSPEMG00000017450	Adar (ENSPEMG00000000814) #12	Chrnb2 (ENSPEMG00000015010) #13	ENSPEMG00000016011 #14	She (ENSPEMG00000026511) #16	Il6ra (ENSPEMG00000012201) #17	Atp8b2 (ENSPEMG00000017200) #18	ENSPEMG00000016049	Hax1 (ENSPEMG00000017453) #20	Ubap2l (ENSPEMG00000007855) #21	4933434E20Rik (ENSPEMG00000000559) #22	Cfap141 (ENSPEMG00000029478) #23	Tpm3 (ENSPEMG00000015470) ##24	Nup210l (ENSPEMG00000012090) #25	ENSPEMG00000017728 #26	Rab13 (ENSPEMG00000017353) #27	Jtb (ENSPEMG00000025697) #28	Creb3l4 (ENSPEMG00000016681) #29	Slc39a1 (ENSPEMG00000027157) #30	Crtc2 (ENSPEMG00000017679) #31	Dennd4b (ENSPEMG00000008335) #32	Gatad2b (ENSPEMG00000013374) #33	ENSPEMG00000003903	Slc27a3 (ENSPEMG00000010037) #34	Ints3 (ENSPEMG00000009736) #35	Npr1 (ENSPEMG00000018127) #36
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00950000182971.B.b.d	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.y #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Golden Hamster	MODERN SPECIES	714	ENSMAUG00000011157	Shc1 (ENSMAUG00000019925) #7	Pygo2 (ENSMAUG00000008090) #8	Pbxip1 (ENSMAUG00000008503) #9	Pmvk (ENSMAUG00000008973) #10	Kcnn3 (ENSMAUG00000000673) #11	Adar (ENSMAUG00000015796) #12	Chrnb2 (ENSMAUG00000021538) #13	Ube2q1 (ENSMAUG00000009758) #14	She (ENSMAUG00000009880) #16	Il6ra (ENSMAUG00000011038) #17	Atp8b2 (ENSMAUG00000001174) #18	Hax1 (ENSMAUG00000009013) #20	ENSMAUG00000022268 #21	ENSMAUG00000003991 #21	4933434E20Rik (ENSMAUG00000001710) #22	Cfap141 (ENSMAUG00000002399) #23	Tpm3 (ENSMAUG00000015501) ##24	Nup210l (ENSMAUG00000020701) #25	ENSMAUG00000017944 #26	Rab13 (ENSMAUG00000015713) #27	Jtb (ENSMAUG00000006012) #28	Slc39a1 (ENSMAUG00000018122) #30	Dennd4b (ENSMAUG00000020876) #32	Gatad2b (ENSMAUG00000021214) #33	Slc27a3 (ENSMAUG00000009254) #34	Ints3 (ENSMAUG00000003190) #35	Npr1 (ENSMAUG00000011600) #36	Ilf2 (ENSMAUG00000013875) #37	Snapin (ENSMAUG00000008480)	Chtop (ENSMAUG00000018496)
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	352	Cks1b (ENSCGRG00001007482)	Shc1 (ENSCGRG00001020387) #7	Pygo2 (ENSCGRG00001001671) #8	Pbxip1 (ENSCGRG00001021803) #9	Pmvk (ENSCGRG00001011237) #10	Kcnn3 (ENSCGRG00001007060) #11	Adar (ENSCGRG00001013419) #12	Chrnb2 (ENSCGRG00001000525) #13	Ube2q1 (ENSCGRG00001022706) #14	She (ENSCGRG00001017032) #16	Il6ra (ENSCGRG00001022987) #17	Atp8b2 (ENSCGRG00001011569) #18	ENSCGRG00001005547 #19	ENSCGRG00001023646 #20	ENSCGRG00001012946 #21	4933434E20Rik (ENSCGRG00001018378) #22	Cfap141 (ENSCGRG00001014550) #23	Tpm3 (ENSCGRG00001019752) ##24	Nup210l (ENSCGRG00001002603) #25	ENSCGRG00001000391 #26	Rab13 (ENSCGRG00001021505) #27	Jtb (ENSCGRG00001016269) #28	Creb3l4 (ENSCGRG00001008711) #29	Slc39a1 (ENSCGRG00001011734) #30	Crtc2 (ENSCGRG00001011316) #31	Dennd4b (ENSCGRG00001001735) #32	Gatad2b (ENSCGRG00001023947) #33	Slc27a3 (ENSCGRG00001015294) #34	Ints3 (ENSCGRG00001024236) #35	Npr1 (ENSCGRG00001000326) #36	ENSCGRG00001009622 #37
Chinese hamster chok1gshd	MODERN SPECIES	1	Col6a3 (ENSCGRG00001024539)	ENSCGRG00001024654	Rbm44 (ENSCGRG00001001293)	Ramp1 (ENSCGRG00001024580)	ENSCGRG00001010672	Scly (ENSCGRG00001024710)	Espnl (ENSCGRG00001024719)	Klhl30 (ENSCGRG00001024698)	Erfe (ENSCGRG00001003481)	Ilkap (ENSCGRG00001007174)	Hes6 (ENSCGRG00001024376)	Per2 (ENSCGRG00001006630)	ENSCGRG00001000697	Traf3ip1 (ENSCGRG00001006330)	Asb1 (ENSCGRG00001024723)	ENSCGRG00001024677 #22	Twist2 (ENSCGRG00001010705)	Hdac4 (ENSCGRG00001003116)	Ndufa10 (ENSCGRG00001000771)	Or6b2 (ENSCGRG00001010619)	Or6b2b (ENSCGRG00001010498)	Or6b3 (ENSCGRG00001009820)	Or9s23 (ENSCGRG00001010591)	ENSCGRG00001024695	Or9s27 (ENSCGRG00001010630)	ENSCGRG00001009865	Or9s14 (ENSCGRG00001024692)	ENSCGRG00001010578	ENSCGRG00001004954	Otos (ENSCGRG00001024726)	Gpc1 (ENSCGRG00001010716)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00770000121731
Eulipotyphla	ANCESTRAL SPECIES	25												ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00940000173255	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26
Common shrew	MODERN SPECIES	5625												ENSSARG00000009102 #18	AQP10 (ENSSARG00000009096) #19	HAX1 (ENSSARG00000009091) #20	UBAP2L (ENSSARG00000009029) #21	C1orf43 (ENSSARG00000009015) #22	ENSSARG00000009010	TPM3 (ENSSARG00000008969) #24	NUP210L (ENSSARG00000008880) #25	RPS27 (ENSSARG00000008869) #26
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00770000121731
Artiodactyla	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Camelidae	ANCESTRAL SPECIES	6	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37	ENSGT00390000008274
Arabian camel	MODERN SPECIES	13	SHC1 (ENSCDRG00005003979) #7	PYGO2 (ENSCDRG00005003934) #8	PBXIP1 (ENSCDRG00005003867) #9	PMVK (ENSCDRG00005003806) #10	KCNN3 (ENSCDRG00005003748) #11	ENSCDRG00005003703	ADAR (ENSCDRG00005003637) #12	CHRNB2 (ENSCDRG00005003608) #13	UBE2Q1 (ENSCDRG00005019653) #14	TDRD10 (ENSCDRG00005019630) #15	SHE (ENSCDRG00005019620) #16	IL6R (ENSCDRG00005019596) #17	ATP8B2 (ENSCDRG00005019499) #18	HAX1 (ENSCDRG00005019427) #20	UBAP2L (ENSCDRG00005019154) #21	C1orf43 (ENSCDRG00005018792) #22	CFAP141 (ENSCDRG00005018735) #23	ENSCDRG00005018555 ##24	ENSCDRG00005018510	NUP210L (ENSCDRG00005017968) #25	ENSCDRG00005017869 ##26	RAB13 (ENSCDRG00005017815) #27	JTB (ENSCDRG00005017759) #28	CREB3L4 (ENSCDRG00005017685) #29	SLC39A1 (ENSCDRG00005017657) #30	CRTC2 (ENSCDRG00005017593) #31	DENND4B (ENSCDRG00005017335) #32	ENSCDRG00005017291	SLC27A3 (ENSCDRG00005017215) #34	INTS3 (ENSCDRG00005017050) #35	NPR1 (ENSCDRG00005016967) #36
Alpaca	MODERN SPECIES	880															UBAP2L (ENSVPAG00000001004) #21	C1orf43 (ENSVPAG00000001003) #22	CFAP141 (ENSVPAG00000001002) #23	TPM3 (ENSVPAG00000001001) #24
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Pecora	ANCESTRAL SPECIES	2	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Yarkand deer	MODERN SPECIES	12	FLAD1 (ENSCHYG00000008080)	CKS1B (ENSCHYG00000008141)	SHC1 (ENSCHYG00000008207) #7	PYGO2 (ENSCHYG00000008470) #8	PBXIP1 (ENSCHYG00000008504) #9	PMVK (ENSCHYG00000008653) #10	KCNN3 (ENSCHYG00000008575) #11	ADAR (ENSCHYG00000008727) #12	CHRNB2 (ENSCHYG00000008890) #13	UBE2Q1 (ENSCHYG00000008978) #14	IL6R (ENSCHYG00000009161) #17	SHE (ENSCHYG00000009423) #16	ATP8B2 (ENSCHYG00000009554) #18	HAX1 (ENSCHYG00000010337) #20	UBAP2L (ENSCHYG00000010563) #21	C1orf43 (ENSCHYG00000011169) #22	ENSCHYG00000011554 ##24	NUP210L (ENSCHYG00000013411) #25	ENSCHYG00000014516	ENSCHYG00000014536 #26	RAB13 (ENSCHYG00000014586) #27	JTB (ENSCHYG00000014678) #28	CREB3L4 (ENSCHYG00000014741) #29	SLC39A1 (ENSCHYG00000014942) #30	CRTC2 (ENSCHYG00000015036) #31	DENND4B (ENSCHYG00000015567) #32	GATAD2B (ENSCHYG00000015975) #33	SLC27A3 (ENSCHYG00000016208) #34	INTS3 (ENSCHYG00000016404) #35	NPR1 (ENSCHYG00000017011) #36	ILF2 (ENSCHYG00000017299) #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Siberian musk deer	MODERN SPECIES	1202	FLAD1 (ENSMMSG00000009964)	CKS1B (ENSMMSG00000010032)	SHC1 (ENSMMSG00000010085) #7	PBXIP1 (ENSMMSG00000010216) #9	PMVK (ENSMMSG00000010308) #10	KCNN3 (ENSMMSG00000010353) #11	ADAR (ENSMMSG00000010532) #12	CHRNB2 (ENSMMSG00000010601) #13	UBE2Q1 (ENSMMSG00000010661) #14	TDRD10 (ENSMMSG00000010722) #15	SHE (ENSMMSG00000010799) #16	IL6R (ENSMMSG00000010839) #17	ATP8B2 (ENSMMSG00000010900) #18	AQP10 (ENSMMSG00000011185) #19	UBAP2L (ENSMMSG00000011299) #21	C1orf43 (ENSMMSG00000011796) #22	CFAP141 (ENSMMSG00000011935) #23	ENSMMSG00000012023 ##24	NUP210L (ENSMMSG00000012518) #25	ENSMMSG00000012901 ##26	RAB13 (ENSMMSG00000012924) #27	JTB (ENSMMSG00000012947) #28	CREB3L4 (ENSMMSG00000012967) #29	SLC39A1 (ENSMMSG00000013005) #30	ENSMMSG00000013036 #31	DENND4B (ENSMMSG00000013175) #32	GATAD2B (ENSMMSG00000013259) #33	SLC27A3 (ENSMMSG00000013293) #34	INTS3 (ENSMMSG00000013366) #35	NPR1 (ENSMMSG00000013448) #36	ILF2 (ENSMMSG00000013509) #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
American bison	MODERN SPECIES	3022	PYGO2 (ENSBBBG00000003118) #8	PBXIP1 (ENSBBBG00000014024) #9	PMVK (ENSBBBG00000003100) #10	ENSBBBG00000003096	KCNN3 (ENSBBBG00000003095) #11	ADAR (ENSBBBG00000014003) #12	CHRNB2 (ENSBBBG00000013928) #13	UBE2Q1 (ENSBBBG00000002895) #14	TDRD10 (ENSBBBG00000013905) #15	SHE (ENSBBBG00000003009) #16	IL6R (ENSBBBG00000013889) #17	ATP8B2 (ENSBBBG00000002983) #18	ENSBBBG00000013824 #19	HAX1 (ENSBBBG00000013795) #20	UBAP2L (ENSBBBG00000008742) #21	C1orf43 (ENSBBBG00000013653) #22	CFAP141 (ENSBBBG00000013575) #23	ENSBBBG00000007596 ##24	NUP210L (ENSBBBG00000002737) #25	ENSBBBG00000013268 #26	RAB13 (ENSBBBG00000013260) #27	JTB (ENSBBBG00000002677) #28	CREB3L4 (ENSBBBG00000013242) #29	SLC39A1 (ENSBBBG00000013213) #30	CRTC2 (ENSBBBG00000013195) #31	DENND4B (ENSBBBG00000002661) #32	GATAD2B (ENSBBBG00000013108) #33	SLC27A3 (ENSBBBG00000013085) #34	NPR1 (ENSBBBG00000002615) #36	ILF2 (ENSBBBG00000013053) #37	SNAPIN (ENSBBBG00000013033)
Bos	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879.r #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #7	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.a.b.a	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b #26	ENSGT00390000004856.w.a.a.a	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Hybrid Bos Indicus	MODERN SPECIES	22	SHC1 (ENSBIXG00005010316) #7	PBXIP1 (ENSBIXG00005010243) #9	PMVK (ENSBIXG00005010164) #10	KCNN3 (ENSBIXG00005010117) #11	ADAR (ENSBIXG00005010010) #12	ENSBIXG00005006102	CHRNB2 (ENSBIXG00005009910) #13	UBE2Q1 (ENSBIXG00005005947) #14	TDRD10 (ENSBIXG00005009837) #15	SHE (ENSBIXG00005009819) #16	IL6R (ENSBIXG00005009808) #17	ATP8B2 (ENSBIXG00005000594) #18	ENSBIXG00005009609 #19	HAX1 (ENSBIXG00005009491) #20	UBAP2L (ENSBIXG00005009439) #21	C1orf43 (ENSBIXG00005009324) #22	CFAP141 (ENSBIXG00005006307) #23	TPM3 (ENSBIXG00005009222) #24	NUP210L (ENSBIXG00005009088) #25	ENSBIXG00005008876 #26	ENSBIXG00005000302	RAB13 (ENSBIXG00005000300) #27	JTB (ENSBIXG00005000281) #28	CREB3L4 (ENSBIXG00005008772) #29	SLC39A1 (ENSBIXG00005000255) #30	ENSBIXG00005008708 #31	DENND4B (ENSBIXG00005008651) #32	GATAD2B (ENSBIXG00005008595) #33	ENSBIXG00005000217	SLC27A3 (ENSBIXG00005008567) #34	INTS3 (ENSBIXG00005008552) #35
Cow	MODERN SPECIES	22	SHC1 (ENSBTAG00000019838) #7	PBXIP1 (ENSBTAG00000004552) #9	PMVK (ENSBTAG00000017819) #10	KCNN3 (ENSBTAG00000018249) #11	ADAR (ENSBTAG00000007519) #12	ENSBTAG00000048725	CHRNB2 (ENSBTAG00000007517) #13	UBE2Q1 (ENSBTAG00000007515) #14	TDRD10 (ENSBTAG00000011881) #15	SHE (ENSBTAG00000020542) #16	IL6R (ENSBTAG00000018474) #17	ATP8B2 (ENSBTAG00000005161) #18	AQP10 (ENSBTAG00000005149) #19	HAX1 (ENSBTAG00000013025) #20	UBAP2L (ENSBTAG00000004271) #21	C3H1orf43 (ENSBTAG00000020026) #22	CFAP141 (ENSBTAG00000033220) #23	TPM3 (ENSBTAG00000033217) #24	NUP210L (ENSBTAG00000004987) #25	ENSBTAG00000024487	RPS27 (ENSBTAG00000013866) #26	ENSBTAG00000018987	RAB13 (ENSBTAG00000017604) #27	JTB (ENSBTAG00000014694) #28	CREB3L4 (ENSBTAG00000014692) #29	SLC39A1 (ENSBTAG00000011284) #30	CRTC2 (ENSBTAG00000017942) #31	DENND4B (ENSBTAG00000018711) #32	GATAD2B (ENSBTAG00000006678) #33	SLC27A3 (ENSBTAG00000021862) #34	INTS3 (ENSBTAG00000006235) #35
Bos_a	ANCESTRAL SPECIES	27	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m.b #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879.r #37
Domestic yak	MODERN SPECIES	22	PYGO2 (ENSBGRG00000009080) #8	PBXIP1 (ENSBGRG00000008978) #9	PMVK (ENSBGRG00000008918) #10	KCNN3 (ENSBGRG00000008715) #11	ENSBGRG00000008692	ADAR (ENSBGRG00000008643) #12	CHRNB2 (ENSBGRG00000008531) #13	UBE2Q1 (ENSBGRG00000008434) #14	TDRD10 (ENSBGRG00000008282) #15	SHE (ENSBGRG00000008191) #16	IL6R (ENSBGRG00000008129) #17	ATP8B2 (ENSBGRG00000007652) #18	ENSBGRG00000007543 #19	HAX1 (ENSBGRG00000007345) #20	UBAP2L (ENSBGRG00000011700) #21	C1orf43 (ENSBGRG00000010897) #22	CFAP141 (ENSBGRG00000010793) #23	ENSBGRG00000009632 ##24	NUP210L (ENSBGRG00000008635) #25	ENSBGRG00000008529 #26	RAB13 (ENSBGRG00000008324) #27	CREB3L4 (ENSBGRG00000008099) #29	JTB (ENSBGRG00000008039) #28	SLC39A1 (ENSBGRG00000008027) #30	CRTC2 (ENSBGRG00000007800) #31	DENND4B (ENSBGRG00000007443) #32	GATAD2B (ENSBGRG00000007224) #33	SLC27A3 (ENSBGRG00000007095) #34	INTS3 (ENSBGRG00000006876) #35	NPR1 (ENSBGRG00000006669) #36	ILF2 (ENSBGRG00000006500) #37
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1060												ENSBMUG00000011422	ZFHX4 (ENSBMUG00000011394)	PEX2 (ENSBMUG00000011354)	ENSBMUG00000011337	ENSBMUG00000011330 #22	ENSBMUG00000011309
Wild yak	MODERN SPECIES	3125															UBAP2L (ENSBMUG00000009662) #21	C1orf43 (ENSBMUG00000009598) #22	CFAP141 (ENSBMUG00000009584) #23	ENSBMUG00000009573 ##24
Caprinae	ANCESTRAL SPECIES	2	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.m #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Rambouillet Sheep	MODERN SPECIES		CKS1B (ENSOARG00020002417)	SHC1 (ENSOARG00020002360) #7	PYGO2 (ENSOARG00020002329) #8	PBXIP1 (ENSOARG00020002298) #9	PMVK (ENSOARG00020002284) #10	KCNN3 (ENSOARG00020002194) #11	ADAR (ENSOARG00020002136) #12	CHRNB2 (ENSOARG00020002109) #13	UBE2Q1 (ENSOARG00020002036) #14	TDRD10 (ENSOARG00020002015) #15	SHE (ENSOARG00020001998) #16	IL6R (ENSOARG00020001913) #17	ATP8B2 (ENSOARG00020001800) #18	HAX1 (ENSOARG00020001735) #20	UBAP2L (ENSOARG00020001679) #21	C1orf43 (ENSOARG00020001551) #22	C1orf189 (ENSOARG00020001521) #23	ENSOARG00020001415 ##24	ENSOARG00020001381 #25	ENSOARG00020001344 #25	ENSOARG00020001330 #26	RAB13 (ENSOARG00020001322) #27	JTB (ENSOARG00020001313) #28	CREB3L4 (ENSOARG00020001282) #29	SLC39A1 (ENSOARG00020001266) #30	CRTC2 (ENSOARG00020001237) #31	DENND4B (ENSOARG00020001161) #32	GATAD2B (ENSOARG00020001112) #33	SLC27A3 (ENSOARG00020001089) #34	INTS3 (ENSOARG00020001042) #35	NPR1 (ENSOARG00020000995) #36
Goat	DUPLICATION
Goat	MODERN SPECIES	5	ENSCHIG00000015884	UBE2W (ENSCHIG00000025248)	ELOC (ENSCHIG00000015198)	TMEM70 (ENSCHIG00000019890)	LY96 (ENSCHIG00000012530)	ENSCHIG00000017122	JPH1 (ENSCHIG00000017967)	GDAP1 (ENSCHIG00000006756)	PI15 (ENSCHIG00000016089)	CRISPLD1 (ENSCHIG00000016652)	HNF4G (ENSCHIG00000001150)	ENSCHIG00000020169	ZFHX4 (ENSCHIG00000017123)	PEX2 (ENSCHIG00000011681)	ENSCHIG00000024972	ENSCHIG00000012572 #22	ENSCHIG00000017797	ENSCHIG00000026486	PKIA (ENSCHIG00000022780)	ZC2HC1A (ENSCHIG00000022396)	IL7 (ENSCHIG00000013214)	ENSCHIG00000022803	STMN2 (ENSCHIG00000014257)	HEY1 (ENSCHIG00000021515)	MRPS28 (ENSCHIG00000018727)	TPD52 (ENSCHIG00000016090)	ZBTB10 (ENSCHIG00000008950)	ZNF704 (ENSCHIG00000009329)	PAG1 (ENSCHIG00000005882)	ENSCHIG00000022058	PMP2 (ENSCHIG00000017466)
Goat	MODERN SPECIES	22	SHC1 (ENSCHIG00000012851) #7	PYGO2 (ENSCHIG00000022839) #8	PBXIP1 (ENSCHIG00000012689) #9	PMVK (ENSCHIG00000024473) #10	KCNN3 (ENSCHIG00000018342) #11	ADAR (ENSCHIG00000017156) #12	CHRNB2 (ENSCHIG00000019561) #13	UBE2Q1 (ENSCHIG00000012187) #14	TDRD10 (ENSCHIG00000022402) #15	SHE (ENSCHIG00000012737) #16	IL6R (ENSCHIG00000012394) #17	ATP8B2 (ENSCHIG00000019010) #18	AQP10 (ENSCHIG00000023807) #19	HAX1 (ENSCHIG00000019434) #20	UBAP2L (ENSCHIG00000021701) #21	C1orf43 (ENSCHIG00000021619) #22	CFAP141 (ENSCHIG00000013219) #23	TPM3 (ENSCHIG00000017467) #24	NUP210L (ENSCHIG00000022403) #25	ENSCHIG00000009267 #26	RAB13 (ENSCHIG00000022271) #27	JTB (ENSCHIG00000021425) #28	CREB3L4 (ENSCHIG00000025478) #29	SLC39A1 (ENSCHIG00000011794) #30	CRTC2 (ENSCHIG00000023157) #31	DENND4B (ENSCHIG00000007112) #32	GATAD2B (ENSCHIG00000017439) #33	SLC27A3 (ENSCHIG00000022587) #34	INTS3 (ENSCHIG00000025770) #35	NPR1 (ENSCHIG00000023233) #36	ILF2 (ENSCHIG00000012048) #37
Cetacea	ANCESTRAL SPECIES		ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00390000013048.q.b.a	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Blue whale	MODERN SPECIES		SHC1 (ENSBMSG00010001723) #7	PYGO2 (ENSBMSG00010001688) #8	PBXIP1 (ENSBMSG00010001670) #9	PMVK (ENSBMSG00010001656) #10	ENSBMSG00010001645	KCNN3 (ENSBMSG00010001548) #11	ADAR (ENSBMSG00010001486) #12	CHRNB2 (ENSBMSG00010001445) #13	UBE2Q1 (ENSBMSG00010001421) #14	TDRD10 (ENSBMSG00010001396) #15	SHE (ENSBMSG00010001369) #16	IL6R (ENSBMSG00010001340) #17	ATP8B2 (ENSBMSG00010001256) #18	HAX1 (ENSBMSG00010001181) #20	UBAP2L (ENSBMSG00010001118) #21	C1orf43 (ENSBMSG00010001037) #22	CFAP141 (ENSBMSG00010001003) #23	ENSBMSG00010000802 ##24	ENSBMSG00010000723	NUP210L (ENSBMSG00010000522) #25	ENSBMSG00010000421 ##26	RAB13 (ENSBMSG00010000407) #27	ENSBMSG00010000380 #28	CREB3L4 (ENSBMSG00010000333) #29	SLC39A1 (ENSBMSG00010000296) #30	CRTC2 (ENSBMSG00010000243) #31	DENND4B (ENSBMSG00010000188) #32	GATAD2B (ENSBMSG00010000167) #33	SLC27A3 (ENSBMSG00010000118) #34	INTS3 (ENSBMSG00010000047) #35	ENSBMSG00010019487
Odontoceti	ANCESTRAL SPECIES		ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00390000013048.q.b.a	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Sperm whale	MODERN SPECIES	15	SYT11 (ENSPCTG00005011179)	GON4L (ENSPCTG00005011256)	MSTO1 (ENSPCTG00005011784)	DAP3 (ENSPCTG00005011863)	ASH1L (ENSPCTG00005012095)	KCNN3 (ENSPCTG00005012225) #11	ADAR (ENSPCTG00005012266) #12	SHC1 (ENSPCTG00005012451) #7	PBXIP1 (ENSPCTG00005012606) #9	EFNA3 (ENSPCTG00005012694)	TDRD10 (ENSPCTG00005012748) #15	SHE (ENSPCTG00005012880) #16	IL6R (ENSPCTG00005012978) #17	HAX1 (ENSPCTG00005013017) #20	UBAP2L (ENSPCTG00005013404) #21	C4H1orf43 (ENSPCTG00005014264) #22	CFAP141 (ENSPCTG00005014779) #23	TPM3 (ENSPCTG00005014890) ##24	ENSPCTG00005015382 #24	NUP210L (ENSPCTG00005015439) #25	NPR1 (ENSPCTG00005015896) #36	INTS3 (ENSPCTG00005016167) #35	SLC27A3 (ENSPCTG00005016261) #34	GATAD2B (ENSPCTG00005016424) #33	ENSPCTG00005016521	S100A8 (ENSPCTG00005016557)	S100A12 (ENSPCTG00005016598)	S100A9 (ENSPCTG00005016642)	ENSPCTG00005016678	ENSPCTG00005016724	ENSPCTG00005016816
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00390000013048.q.b.a	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Dolphin	MODERN SPECIES	2664												ATP8B2 (ENSTTRG00000015867) #18	AQP10 (ENSTTRG00000015864) #19	HAX1 (ENSTTRG00000015855) #20	UBAP2L (ENSTTRG00000015830) #21	C1orf43 (ENSTTRG00000015824) #22	CFAP141 (ENSTTRG00000015819) #23	TPM3 (ENSTTRG00000015810) #24	NUP210L (ENSTTRG00000015783) #25
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00390000013048.q.b.a	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a.i #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Beluga whale	MODERN SPECIES	69	CKS1B (ENSDLEG00000010640)	SHC1 (ENSDLEG00000010555) #7	PYGO2 (ENSDLEG00000010536) #8	PBXIP1 (ENSDLEG00000010500) #9	PMVK (ENSDLEG00000010484) #10	KCNN3 (ENSDLEG00000010451) #11	ADAR (ENSDLEG00000010404) #12	CHRNB2 (ENSDLEG00000010379) #13	UBE2Q1 (ENSDLEG00000010348) #14	TDRD10 (ENSDLEG00000010306) #15	SHE (ENSDLEG00000010284) #16	IL6R (ENSDLEG00000010263) #17	ATP8B2 (ENSDLEG00000010077) #18	HAX1 (ENSDLEG00000010033) #20	UBAP2L (ENSDLEG00000009936) #21	CUNH1orf43 (ENSDLEG00000009912) #22	CFAP141 (ENSDLEG00000009884) #23	ENSDLEG00000009864 ##24	TPM3 (ENSDLEG00000009786) #24	NUP210L (ENSDLEG00000008115) #25	ENSDLEG00000007980 ##26	RAB13 (ENSDLEG00000007961) #27	JTB (ENSDLEG00000007934) #28	ENSDLEG00000011053 #29	SLC39A1 (ENSDLEG00000011047) #30	CRTC2 (ENSDLEG00000010750) #31	DENND4B (ENSDLEG00000010669) #32	GATAD2B (ENSDLEG00000010639) #33	SLC27A3 (ENSDLEG00000010561) #34	INTS3 (ENSDLEG00000010414) #35	NPR1 (ENSDLEG00000010307) #36
Narwhal	MODERN SPECIES	304	CKS1B (ENSMMNG00015013814)	SHC1 (ENSMMNG00015013834) #7	PYGO2 (ENSMMNG00015013864) #8	PBXIP1 (ENSMMNG00015013877) #9	PMVK (ENSMMNG00015013887) #10	KCNN3 (ENSMMNG00015013903) #11	ADAR (ENSMMNG00015013922) #12	CHRNB2 (ENSMMNG00015013953) #13	UBE2Q1 (ENSMMNG00015013965) #14	TDRD10 (ENSMMNG00015013995) #15	ENSMMNG00015014006 #16	IL6R (ENSMMNG00015014021) #17	ATP8B2 (ENSMMNG00015014073) #18	HAX1 (ENSMMNG00015014148) #20	UBAP2L (ENSMMNG00015014236) #21	C1orf43 (ENSMMNG00015014459) #22	CFAP141 (ENSMMNG00015014508) #23	ENSMMNG00015000249 ##24	NUP210L (ENSMMNG00015000593) #25	ENSMMNG00015000867 ##26	RAB13 (ENSMMNG00015000895) #27	JTB (ENSMMNG00015000950) #28	CREB3L4 (ENSMMNG00015001002) #29	SLC39A1 (ENSMMNG00015001047) #30	CRTC2 (ENSMMNG00015001079) #31	DENND4B (ENSMMNG00015001160) #32	GATAD2B (ENSMMNG00015001287) #33	SLC27A3 (ENSMMNG00015001407) #34	INTS3 (ENSMMNG00015001446) #35	NPR1 (ENSMMNG00015001549) #36	ILF2 (ENSMMNG00015001680) #37
Vaquita	MODERN SPECIES		PYGO2 (ENSPSNG00000003370) #8	PBXIP1 (ENSPSNG00000003349) #9	PMVK (ENSPSNG00000003319) #10	ENSPSNG00000003302	KCNN3 (ENSPSNG00000003267) #11	ADAR (ENSPSNG00000003228) #12	CHRNB2 (ENSPSNG00000003203) #13	UBE2Q1 (ENSPSNG00000003187) #14	TDRD10 (ENSPSNG00000003151) #15	ENSPSNG00000003135 #16	IL6R (ENSPSNG00000003115) #17	ENSPSNG00000003073 #18	ENSPSNG00000003045 #18	AQP10 (ENSPSNG00000003017) #19	UBAP2L (ENSPSNG00000002900) #21	C1orf43 (ENSPSNG00000002677) #22	CFAP141 (ENSPSNG00000002637) #23	ENSPSNG00000002548 ##24	NUP210L (ENSPSNG00000002274) #25	RPS27 (ENSPSNG00000002137) #26	RAB13 (ENSPSNG00000002114) #27	JTB (ENSPSNG00000002085) #28	CREB3L4 (ENSPSNG00000002049) #29	SLC39A1 (ENSPSNG00000002032) #30	CRTC2 (ENSPSNG00000001957) #31	DENND4B (ENSPSNG00000001848) #32	GATAD2B (ENSPSNG00000001801) #33	INTS3 (ENSPSNG00000001667) #35	NPR1 (ENSPSNG00000001588) #36	ILF2 (ENSPSNG00000001548) #37	SNAPIN (ENSPSNG00000001522)
Suina	ANCESTRAL SPECIES	8	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Chacoan peccary	MODERN SPECIES	29	PYGO2 (ENSCWAG00000001036) #8	PBXIP1 (ENSCWAG00000001057) #9	PMVK (ENSCWAG00000001096) #10	KCNN3 (ENSCWAG00000001145) #11	ENSCWAG00000001236	ADAR (ENSCWAG00000001258) #12	CHRNB2 (ENSCWAG00000001310) #13	UBE2Q1 (ENSCWAG00000001337) #14	TDRD10 (ENSCWAG00000001366) #15	SHE (ENSCWAG00000001404) #16	IL6R (ENSCWAG00000001430) #17	ATP8B2 (ENSCWAG00000001478) #18	AQP10 (ENSCWAG00000001546) #19	HAX1 (ENSCWAG00000001569) #20	UBAP2L (ENSCWAG00000001612) #21	C1orf43 (ENSCWAG00000001744) #22	ENSCWAG00000001872 ##24	NUP210L (ENSCWAG00000002171) #25	ENSCWAG00000002378 #26	RAB13 (ENSCWAG00000002389) #27	JTB (ENSCWAG00000002408) #28	CREB3L4 (ENSCWAG00000002425) #29	SLC39A1 (ENSCWAG00000002450) #30	CRTC2 (ENSCWAG00000002471) #31	DENND4B (ENSCWAG00000002504) #32	GATAD2B (ENSCWAG00000002524) #33	SLC27A3 (ENSCWAG00000002554) #34	INTS3 (ENSCWAG00000002571) #35	NPR1 (ENSCWAG00000002631) #36	ILF2 (ENSCWAG00000002649) #37	SNAPIN (ENSCWAG00000002674)
Pig	MODERN SPECIES	12	CKS1B (ENSSSCG00000054923)	PBXIP1 (ENSSSCG00000006540) #9	PMVK (ENSSSCG00000055689) #10	KCNN3 (ENSSSCG00000006542) #11	ENSSSCG00000033749	ADAR (ENSSSCG00000006543) #12	CHRNB2 (ENSSSCG00000006545) #13	UBE2Q1 (ENSSSCG00000006544) #14	TDRD10 (ENSSSCG00000006546) #15	SHE (ENSSSCG00000006547) #16	IL6R (ENSSSCG00000027628) #17	ATP8B2 (ENSSSCG00000006550) #18	AQP10 (ENSSSCG00000006551) #19	HAX1 (ENSSSCG00000006552) #20	UBAP2L (ENSSSCG00000006553) #21	C1orf43 (ENSSSCG00000006554) #22	CFAP141 (ENSSSCG00000006555) #23	ENSSSCG00000006556 ##24	NUP210L (ENSSSCG00000038125) #25	RPS27 (ENSSSCG00000031838) #26	RAB13 (ENSSSCG00000006564) #27	ENSSSCG00000006559 #28	CREB3L4 (ENSSSCG00000006560) #29	SLC39A1 (ENSSSCG00000006561) #30	CRTC2 (ENSSSCG00000006567) #31	DENND4B (ENSSSCG00000006568) #32	GATAD2B (ENSSSCG00000006562) #33	ENSSSCG00000053251	SLC27A3 (ENSSSCG00000006569) #34	ENSSSCG00000043560	INTS3 (ENSSSCG00000006571) #35
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00770000121731
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Megabat	MODERN SPECIES	1053												ATP8B2 (ENSPVAG00000002734) #18	AQP10 (ENSPVAG00000002732) #19	HAX1 (ENSPVAG00000002728) #20	UBAP2L (ENSPVAG00000002721) #21	C1orf43 (ENSPVAG00000002717) #22	ENSPVAG00000002715 #23	TPM3 (ENSPVAG00000002713) #24
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1088	SHC1 (ENSMLUG00000002396) #7	PYGO2 (ENSMLUG00000002389) #8	PBXIP1 (ENSMLUG00000002380) #9	PMVK (ENSMLUG00000002376) #10	KCNN3 (ENSMLUG00000002369) #11	ADAR (ENSMLUG00000017678) #12	CHRNB2 (ENSMLUG00000007541) #13	ENSMLUG00000023082	UBE2Q1 (ENSMLUG00000017677) #14	TDRD10 (ENSMLUG00000017676) #15	SHE (ENSMLUG00000005436) #16	ENSMLUG00000005427 #17	ATP8B2 (ENSMLUG00000014400) #18	HAX1 (ENSMLUG00000012947) #20	UBAP2L (ENSMLUG00000012931) #21	ENSMLUG00000013338 #22	CFAP141 (ENSMLUG00000013334) #23	TPM3 (ENSMLUG00000013331) #24	NUP210L (ENSMLUG00000013302) #25	ENSMLUG00000017188 #26	RAB13 (ENSMLUG00000017186) #27	JTB (ENSMLUG00000013299) #28	CREB3L4 (ENSMLUG00000013291) #29	SLC39A1 (ENSMLUG00000013282) #30	CRTC2 (ENSMLUG00000013266) #31	DENND4B (ENSMLUG00000013245) #32	GATAD2B (ENSMLUG00000004859) #33	SLC27A3 (ENSMLUG00000001876) #34	INTS3 (ENSMLUG00000001857) #35	NPR1 (ENSMLUG00000001852) #36	ENSMLUG00000001847 #37
Microbat	MODERN SPECIES	995	MTCL1 (ENSMLUG00000002889)	RAB12 (ENSMLUG00000002883)	PTPRM (ENSMLUG00000016507)	LRRC30 (ENSMLUG00000004630)	LAMA1 (ENSMLUG00000004002)	ARHGAP28 (ENSMLUG00000005314)	ENSMLUG00000023508	L3MBTL4 (ENSMLUG00000002011)	EPB41L3 (ENSMLUG00000016125)	ZBTB14 (ENSMLUG00000016123)	ENSMLUG00000030528	DLGAP1 (ENSMLUG00000012142)	TGIF1 (ENSMLUG00000025199)	MYL12B (ENSMLUG00000005189)	MYOM1 (ENSMLUG00000003417)	ENSMLUG00000029548 #22	LPIN2 (ENSMLUG00000003403)	EMILIN2 (ENSMLUG00000003397)	SMCHD1 (ENSMLUG00000003378)	NDC80 (ENSMLUG00000003354)	METTL4 (ENSMLUG00000003351)
Greater horseshoe bat	MODERN SPECIES	14					KCNN3 (ENSRFEG00010019684) #11	ADAR (ENSRFEG00010019633) #12	CHRNB2 (ENSRFEG00010019597) #13	UBE2Q1 (ENSRFEG00010019550) #14	TDRD10 (ENSRFEG00010019390) #15	SHE (ENSRFEG00010019326) #16	IL6R (ENSRFEG00010019174) #17	ATP8B2 (ENSRFEG00010018802) #18	AQP10 (ENSRFEG00010018725) #19	HAX1 (ENSRFEG00010018647) #20	UBAP2L (ENSRFEG00010018473) #21	C1orf43 (ENSRFEG00010018213) #22	ENSRFEG00010017998 ##24	NUP210L (ENSRFEG00010016772) #25	ENSRFEG00010016684 ##26	RAB13 (ENSRFEG00010016602) #27	ENSRFEG00010016517 #28	CREB3L4 (ENSRFEG00010016292) #29	SLC39A1 (ENSRFEG00010016233) #30	CRTC2 (ENSRFEG00010016088) #31	DENND4B (ENSRFEG00010016057) #32	GATAD2B (ENSRFEG00010015979) #33	ENSRFEG00010015793	SLC27A3 (ENSRFEG00010015641) #34	INTS3 (ENSRFEG00010015572) #35	NPR1 (ENSRFEG00010015519) #36	SNAPIN (ENSRFEG00010015441)
Equus	ANCESTRAL SPECIES	3	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Horse	MODERN SPECIES	26	SHC1 (ENSECAG00000003967) #7	PYGO2 (ENSECAG00000015057) #8	PBXIP1 (ENSECAG00000026849) #9	PMVK (ENSECAG00000016089) #10	KCNN3 (ENSECAG00000018199) #11	ADAR (ENSECAG00000000974) #12	CHRNB2 (ENSECAG00000016633) #13	UBE2Q1 (ENSECAG00000016647) #14	ENSECAG00000023297 #15	SHE (ENSECAG00000023754) #16	IL6R (ENSECAG00000024047) #17	ATP8B2 (ENSECAG00000001415) #18	AQP10 (ENSECAG00000033720) #19	HAX1 (ENSECAG00000027002) #20	UBAP2L (ENSECAG00000005014) #21	C1orf43 (ENSECAG00000017585) #22	NUP210L (ENSECAG00000002401) #25	RAB13 (ENSECAG00000016551) #27	JTB (ENSECAG00000035110) #28	CREB3L4 (ENSECAG00000017552) #29	SLC39A1 (ENSECAG00000020739) #30	CRTC2 (ENSECAG00000023238) #31	DENND4B (ENSECAG00000007422) #32	GATAD2B (ENSECAG00000011357) #33	ENSECAG00000014805	SLC27A3 (ENSECAG00000015841) #34	INTS3 (ENSECAG00000022270) #35	NPR1 (ENSECAG00000000954) #36	ILF2 (ENSECAG00000008567) #37	SNAPIN (ENSECAG00000020426)	CHTOP (ENSECAG00000020889)
Donkey	MODERN SPECIES	17	SHC1 (ENSEASG00005000225) #7	PYGO2 (ENSEASG00005000238) #8	PBXIP1 (ENSEASG00005026805) #9	PMVK (ENSEASG00005038399) #10	KCNN3 (ENSEASG00005000281) #11	ADAR (ENSEASG00005000290) #12	CHRNB2 (ENSEASG00005000300) #13	UBE2Q1 (ENSEASG00005000305) #14	ENSEASG00005000310 #15	SHE (ENSEASG00005031571) #16	IL6R (ENSEASG00005000344) #17	ATP8B2 (ENSEASG00005000350) #18	AQP10 (ENSEASG00005000379) #19	HAX1 (ENSEASG00005000433) #20	UBAP2L (ENSEASG00005000449) #21	C1orf43 (ENSEASG00005026219) #22	CFAP141 (ENSEASG00005033316) #23	TPM3 (ENSEASG00005000501) #24	NUP210L (ENSEASG00005000514) #25	ENSEASG00005038700	RPS27 (ENSEASG00005000650) #26	RAB13 (ENSEASG00005000683) #27	JTB (ENSEASG00005024586) #28	CREB3L4 (ENSEASG00005000725) #29	SLC39A1 (ENSEASG00005031953) #30	CRTC2 (ENSEASG00005000736) #31	DENND4B (ENSEASG00005000741) #32	GATAD2B (ENSEASG00005000752) #33	ENSEASG00005000764	SLC27A3 (ENSEASG00005000821) #34	INTS3 (ENSEASG00005000830) #35
Carnivora	ANCESTRAL SPECIES	14	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731
Caniformia	ANCESTRAL SPECIES	10	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00950000182891.a.a.b.a.b.b.a ##26	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.a ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Mustelinae	ANCESTRAL SPECIES	23	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37	ENSGT00390000008274	ENSGT00390000002869
Ferret	MODERN SPECIES	510					ENSMPUG00000007123 #11	ADAR (ENSMPUG00000007140) #12	CHRNB2 (ENSMPUG00000007148) #13	ENSMPUG00000019806	UBE2Q1 (ENSMPUG00000007178) #14	SHE (ENSMPUG00000007337) #16	IL6R (ENSMPUG00000007346) #17	ATP8B2 (ENSMPUG00000007409) #18	AQP10 (ENSMPUG00000007728) #19	ENSMPUG00000007808 #20	UBAP2L (ENSMPUG00000007820) #21	C1orf43 (ENSMPUG00000007840) #22	ENSMPUG00000007875 ##24	NUP210L (ENSMPUG00000007880) #25	RAB13 (ENSMPUG00000007896) #27	CREB3L4 (ENSMPUG00000007975) #29	SLC39A1 (ENSMPUG00000007981) #30	CRTC2 (ENSMPUG00000007999) #31	DENND4B (ENSMPUG00000008118) #32	GATAD2B (ENSMPUG00000008136) #33	INTS3 (ENSMPUG00000008221) #35	NPR1 (ENSMPUG00000008249) #36	ILF2 (ENSMPUG00000008267) #37	SNAPIN (ENSMPUG00000008280)	CHTOP (ENSMPUG00000008311)	S100A1 (ENSMPUG00000008315)	S100A13 (ENSMPUG00000008336)
American mink	MODERN SPECIES	260	CKS1B (ENSNVIG00000018437)	SHC1 (ENSNVIG00000018406) #7	PYGO2 (ENSNVIG00000018388) #8	PBXIP1 (ENSNVIG00000018377) #9	PMVK (ENSNVIG00000018365) #10	KCNN3 (ENSNVIG00000018299) #11	ADAR (ENSNVIG00000018260) #12	CHRNB2 (ENSNVIG00000018252) #13	UBE2Q1 (ENSNVIG00000018237) #14	SHE (ENSNVIG00000018220) #16	ENSNVIG00000018215 #17	ATP8B2 (ENSNVIG00000018053) #18	AQP10 (ENSNVIG00000018004) #19	HAX1 (ENSNVIG00000017973) #20	UBAP2L (ENSNVIG00000017775) #21	C1orf43 (ENSNVIG00000017630) #22	ENSNVIG00000017428 ##24	ENSNVIG00000017372 #25	ENSNVIG00000017361 ##26	RAB13 (ENSNVIG00000017346) #27	ENSNVIG00000017323 #28	CREB3L4 (ENSNVIG00000017267) #29	SLC39A1 (ENSNVIG00000017250) #30	ENSNVIG00000017244	CRTC2 (ENSNVIG00000017220) #31	DENND4B (ENSNVIG00000017178) #32	GATAD2B (ENSNVIG00000017138) #33	SLC27A3 (ENSNVIG00000017050) #34	INTS3 (ENSNVIG00000015347) #35	NPR1 (ENSNVIG00000015213) #36	ILF2 (ENSNVIG00000015154) #37
Ursidae	ANCESTRAL SPECIES	4	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.a ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00770000121731	ENSGT00390000014184 #35
Ursus	ANCESTRAL SPECIES	72	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073.c #34	ENSGT00770000121731	ENSGT00940000161073.d #34	ENSGT00390000014184 #35
Polar bear	MODERN SPECIES	200	FLAD1 (ENSUMAG00000019754)	CKS1B (ENSUMAG00000019771)	SHC1 (ENSUMAG00000019824) #7	ENSUMAG00000019912	PMVK (ENSUMAG00000019919) #10	KCNN3 (ENSUMAG00000019928) #11	ADAR (ENSUMAG00000019958) #12	CHRNB2 (ENSUMAG00000019965) #13	UBE2Q1 (ENSUMAG00000019971) #14	SHE (ENSUMAG00000019978) #16	IL6R (ENSUMAG00000019986) #17	ATP8B2 (ENSUMAG00000019998) #18	AQP10 (ENSUMAG00000020094) #19	HAX1 (ENSUMAG00000020103) #20	UBAP2L (ENSUMAG00000020128) #21	C1orf43 (ENSUMAG00000020190) #22	CFAP141 (ENSUMAG00000020216) #23	ENSUMAG00000020221 ##24	NUP210L (ENSUMAG00000020243) #25	RAB13 (ENSUMAG00000020303) #27	JTB (ENSUMAG00000020309) #28	CREB3L4 (ENSUMAG00000020311) #29	SLC39A1 (ENSUMAG00000020316) #30	CRTC2 (ENSUMAG00000020324) #31	GATAD2B (ENSUMAG00000020377) #33	SLC27A3 (ENSUMAG00000020383) #34	ENSUMAG00000020425	INTS3 (ENSUMAG00000020431) #35	NPR1 (ENSUMAG00000020479) #36	ILF2 (ENSUMAG00000020682) #37	CHTOP (ENSUMAG00000020689)
American black bear	MODERN SPECIES	1287																C1orf43 (ENSUAMG00000024389) #22	CFAP141 (ENSUAMG00000024388) #23	ENSUAMG00000024387 ##24	TPM3 (ENSUAMG00000024386) #24	NUP210L (ENSUAMG00000024385) #25	ENSUAMG00000024384	RAB13 (ENSUAMG00000024383) #27	JTB (ENSUAMG00000024382) #28	CREB3L4 (ENSUAMG00000024381) #29	SLC39A1 (ENSUAMG00000024380) #30	ENSUAMG00000024379 #31	ENSUAMG00000024378 #31	DENND4B (ENSUAMG00000024372) #32
Giant Panda	MODERN SPECIES	18	ENSAMEG00000024176	SHC1 (ENSAMEG00000011498) #7	PYGO2 (ENSAMEG00000011539) #8	PBXIP1 (ENSAMEG00000011551) #9	PMVK (ENSAMEG00000011559) #10	KCNN3 (ENSAMEG00000011569) #11	ADAR (ENSAMEG00000011594) #12	CHRNB2 (ENSAMEG00000011599) #13	ENSAMEG00000011611 #14	SHE (ENSAMEG00000011664) #16	IL6R (ENSAMEG00000011676) #17	ATP8B2 (ENSAMEG00000011695) #18	AQP10 (ENSAMEG00000011745) #19	HAX1 (ENSAMEG00000011750) #20	UBAP2L (ENSAMEG00000011772) #21	C1orf43 (ENSAMEG00000011865) #22	CFAP141 (ENSAMEG00000029690) #23	ENSAMEG00000011877 ##24	NUP210L (ENSAMEG00000011885) #25	RPS27 (ENSAMEG00000011918) ##26	RAB13 (ENSAMEG00000011919) #27	JTB (ENSAMEG00000011934) #28	CREB3L4 (ENSAMEG00000011947) #29	SLC39A1 (ENSAMEG00000011965) #30	ENSAMEG00000011971 #31	ENSAMEG00000012085 #35	DENND4B (ENSAMEG00000011996) #32	ENSAMEG00000012036 #33	SLC27A3 (ENSAMEG00000012056) #34	NPR1 (ENSAMEG00000012126) #36	ILF2 (ENSAMEG00000012155) #37
Canidae	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.z.b #20	ENSGT00390000018324.z.a #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989.i.a #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Red fox	MODERN SPECIES	23	CKS1B (ENSVVUG00000001940)	SHC1 (ENSVVUG00000001922) #7	PYGO2 (ENSVVUG00000001909) #8	PBXIP1 (ENSVVUG00000001899) #9	PMVK (ENSVVUG00000001879) #10	KCNN3 (ENSVVUG00000001873) #11	ADAR (ENSVVUG00000001831) #12	CHRNB2 (ENSVVUG00000001790) #13	UBE2Q1 (ENSVVUG00000001767) #14	SHE (ENSVVUG00000001751) #16	IL6R (ENSVVUG00000001704) #17	ATP8B2 (ENSVVUG00000000515) #18	AQP10 (ENSVVUG00000000315) #19	ENSVVUG00000000252 #20	UBAP2L (ENSVVUG00000000212) #21	CUNH1orf43 (ENSVVUG00000000194) #22	ENSVVUG00000000125	CFAP141 (ENSVVUG00000028643) #23	ENSVVUG00000028641 ##24	TPM3 (ENSVVUG00000028640) #24	ENSVVUG00000028639	NUP210L (ENSVVUG00000028380) #25	ENSVVUG00000028354 #27	JTB (ENSVVUG00000028352) #28	CREB3L4 (ENSVVUG00000028345) #29	SLC39A1 (ENSVVUG00000028343) #30	CRTC2 (ENSVVUG00000028288) #31	DENND4B (ENSVVUG00000028280) #32	GATAD2B (ENSVVUG00000028277) #33	ENSVVUG00000028276	INTS3 (ENSVVUG00000028270) #34
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.z.b #20	ENSGT00390000018324.y #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00940000159989.j #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37	ENSGT00390000008274	ENSGT00390000002869
Dog	MODERN SPECIES	35	FLAD1 (ENSCAFG00845014003)	CKS1B (ENSCAFG00845014039)	SHC1 (ENSCAFG00845014088) #7	PYGO2 (ENSCAFG00845014125) #8	PBXIP1 (ENSCAFG00845014145) #9	PMVK (ENSCAFG00845014186) #10	KCNN3 (ENSCAFG00845014229) #11	ADAR (ENSCAFG00845014266) #12	CHRNB2 (ENSCAFG00845014294) #13	UBE2Q1 (ENSCAFG00845014318) #14	SHE (ENSCAFG00845014347) #16	IL6R (ENSCAFG00845014397) #17	ATP8B2 (ENSCAFG00845014509) #18	AQP10 (ENSCAFG00845014670) #19	ENSCAFG00845014707 #20	C7H1orf43 (ENSCAFG00845014887) #22	TPM3 (ENSCAFG00845015257) #24	NUP210L (ENSCAFG00845015658) #25	ENSCAFG00845016108	ENSCAFG00845016149	RPS27 (ENSCAFG00845016218) ##26	RAB13 (ENSCAFG00845016274) #27	JTB (ENSCAFG00845016331) #28	CREB3L4 (ENSCAFG00845016392) #29	SLC39A1 (ENSCAFG00845016459) #30	CRTC2 (ENSCAFG00845016688) #31	DENND4B (ENSCAFG00845016924) #32	GATAD2B (ENSCAFG00845001378) #33	NPR1 (ENSCAFG00845001483) #36	SLC27A3 (ENSCAFG00845001620) #34	INTS3 (ENSCAFG00845001651) #35
Dingo	MODERN SPECIES	271	SHC1 (ENSCAFG00020007985) #7	PYGO2 (ENSCAFG00020008152) #8	PBXIP1 (ENSCAFG00020008160) #9	PMVK (ENSCAFG00020008168) #10	KCNN3 (ENSCAFG00020008194) #11	ADAR (ENSCAFG00020008204) #12	CHRNB2 (ENSCAFG00020008218) #13	UBE2Q1 (ENSCAFG00020008236) #14	SHE (ENSCAFG00020008246) #16	IL6R (ENSCAFG00020008264) #17	ATP8B2 (ENSCAFG00020008340) #18	ENSCAFG00020008357 #19	ENSCAFG00020008364 #20	ENSCAFG00020008369 #20	UBAP2L (ENSCAFG00020008373) #21	C1orf43 (ENSCAFG00020008410) #22	TPM3 (ENSCAFG00020008442) #24	NUP210L (ENSCAFG00020009182) #25	ENSCAFG00020009234	ENSCAFG00020009238 #26	ENSCAFG00020009254	ENSCAFG00020009258 #27	JTB (ENSCAFG00020009267) #28	CREB3L4 (ENSCAFG00020009278) #29	SLC39A1 (ENSCAFG00020009280) #30	CRTC2 (ENSCAFG00020009299) #31	DENND4B (ENSCAFG00020009558) #32	GATAD2B (ENSCAFG00020010206) #33	SLC27A3 (ENSCAFG00020010257) #34	INTS3 (ENSCAFG00020010273) #35	NPR1 (ENSCAFG00020010282) #36
Felidae	ANCESTRAL SPECIES	11	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Panthera	ANCESTRAL SPECIES	38	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Panthera_a	ANCESTRAL SPECIES	37	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
lion	MODERN SPECIES	49									UBE2Q1 (ENSPLOG00000005602) #14	SHE (ENSPLOG00000005657) #16	IL6R (ENSPLOG00000005706) #17	ATP8B2 (ENSPLOG00000005778) #18	AQP10 (ENSPLOG00000005999) #19	HAX1 (ENSPLOG00000006043) #20	UBAP2L (ENSPLOG00000006160) #21	C1orf43 (ENSPLOG00000007647) #22	CFAP141 (ENSPLOG00000007762) #23	ENSPLOG00000007922 ##24	NUP210L (ENSPLOG00000008638) #25	ENSPLOG00000009182 ##26	RAB13 (ENSPLOG00000009240) #27	JTB (ENSPLOG00000009315) #28	CREB3L4 (ENSPLOG00000009352) #29	SLC39A1 (ENSPLOG00000009417) #30	CRTC2 (ENSPLOG00000009490) #31	DENND4B (ENSPLOG00000009629) #32	GATAD2B (ENSPLOG00000009690) #33	SLC27A3 (ENSPLOG00000009744) #34	INTS3 (ENSPLOG00000009816) #35	NPR1 (ENSPLOG00000010004) #36	ILF2 (ENSPLOG00000010111) #37
leopard	MODERN SPECIES	138	FLAD1 (ENSPPRG00000024381)	CKS1B (ENSPPRG00000024183)	SHC1 (ENSPPRG00000023859) #7	PYGO2 (ENSPPRG00000023417) #8	PMVK (ENSPPRG00000000438) #10	KCNN3 (ENSPPRG00000001632) #11	ADAR (ENSPPRG00000001779) #12	CHRNB2 (ENSPPRG00000002059) #13	UBE2Q1 (ENSPPRG00000005434) #14	SHE (ENSPPRG00000006536) #16	IL6R (ENSPPRG00000008215) #17	ATP8B2 (ENSPPRG00000010347) #18	AQP10 (ENSPPRG00000016336) #19	HAX1 (ENSPPRG00000019472) #20	UBAP2L (ENSPPRG00000024589) #21	C1orf43 (ENSPPRG00000023434) #22	CFAP141 (ENSPPRG00000023315) #23	ENSPPRG00000003861 ##24	NUP210L (ENSPPRG00000008018) #25	ENSPPRG00000008208 ##26	RAB13 (ENSPPRG00000008865) #27	JTB (ENSPPRG00000009055) #28	CREB3L4 (ENSPPRG00000009607) #29	SLC39A1 (ENSPPRG00000010207) #30	CRTC2 (ENSPPRG00000010452) #31	DENND4B (ENSPPRG00000012451) #32	GATAD2B (ENSPPRG00000015198) #33	SLC27A3 (ENSPPRG00000024717) #34	INTS3 (ENSPPRG00000023995) #35	NPR1 (ENSPPRG00000023804) #36	ILF2 (ENSPPRG00000023707) #37
Tiger	MODERN SPECIES	274	FLAD1 (ENSPTIG00000016069)	CKS1B (ENSPTIG00000017014)	SHC1 (ENSPTIG00000017438) #7	PYGO2 (ENSPTIG00000018594) #8	PMVK (ENSPTIG00000019025) #10	ENSPTIG00000019211 #11	ENSPTIG00000019964 #12	CHRNB2 (ENSPTIG00000020161) #13	ENSPTIG00000020922 #14	ENSPTIG00000021065 #16	ENSPTIG00000021560 #17	ENSPTIG00000001603 #18	AQP10 (ENSPTIG00000006017) #19	HAX1 (ENSPTIG00000006813) #20	UBAP2L (ENSPTIG00000008318) #21	C1orf43 (ENSPTIG00000015880) #22	ENSPTIG00000018941	ENSPTIG00000019870 ##24	NUP210L (ENSPTIG00000020585) #25	ENSPTIG00000021840 ##26	RAB13 (ENSPTIG00000021869) #27	JTB (ENSPTIG00000021924) #28	CREB3L4 (ENSPTIG00000022008) #29	ENSPTIG00000005882 #30	CRTC2 (ENSPTIG00000006256) #31	GATAD2B (ENSPTIG00000007695) #33	SLC27A3 (ENSPTIG00000010006) #34	INTS3 (ENSPTIG00000012061) #35	NPR1 (ENSPTIG00000017104) #36	ILF2 (ENSPTIG00000017810) #37	SNAPIN (ENSPTIG00000018449)
Cat	MODERN SPECIES	248	CKS1B (ENSFCAG00000032392)	SHC1 (ENSFCAG00000001346) #7	PYGO2 (ENSFCAG00000037751) #8	PBXIP1 (ENSFCAG00000001344) #9	PMVK (ENSFCAG00000001343) #10	KCNN3 (ENSFCAG00000008233) #11	ADAR (ENSFCAG00000001341) #12	CHRNB2 (ENSFCAG00000022169) #13	UBE2Q1 (ENSFCAG00000026274) #14	SHE (ENSFCAG00000008746) #16	IL6R (ENSFCAG00000026747) #17	ATP8B2 (ENSFCAG00000010416) #18	AQP10 (ENSFCAG00000007072) #19	HAX1 (ENSFCAG00000031262) #20	UBAP2L (ENSFCAG00000010414) #21	CF1H1orf43 (ENSFCAG00000012597) #22	TPM3 (ENSFCAG00000040513) #24	NUP210L (ENSFCAG00000012595) #25	RPS27 (ENSFCAG00000039538) #26	RAB13 (ENSFCAG00000045269) #27	JTB (ENSFCAG00000012590) #28	CREB3L4 (ENSFCAG00000012586) #29	SLC39A1 (ENSFCAG00000026335) #30	CRTC2 (ENSFCAG00000001298) #31	DENND4B (ENSFCAG00000028483) #32	GATAD2B (ENSFCAG00000002751) #33	SLC27A3 (ENSFCAG00000002749) #34	INTS3 (ENSFCAG00000002744) #35	NPR1 (ENSFCAG00000002743) #36	ILF2 (ENSFCAG00000008171) #37	SNAPIN (ENSFCAG00000008170)
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35
Xenarthra	ANCESTRAL SPECIES	34			ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3322			PYGO2 (ENSDNOG00000039841) #8	PBXIP1 (ENSDNOG00000043652) #9	PMVK (ENSDNOG00000045405) #10	KCNN3 (ENSDNOG00000002724) #11	ADAR (ENSDNOG00000008913) #12	CHRNB2 (ENSDNOG00000014261) #13	UBE2Q1 (ENSDNOG00000008889) #14	SHE (ENSDNOG00000047582) #16	IL6R (ENSDNOG00000036939) #17	ATP8B2 (ENSDNOG00000019161) #18	AQP10 (ENSDNOG00000024493) #19	HAX1 (ENSDNOG00000036151) #20	ENSDNOG00000019163 #21	ENSDNOG00000019160 #22	CFAP141 (ENSDNOG00000019159) #23	NUP210L (ENSDNOG00000005990) #25	RAB13 (ENSDNOG00000046350) #27	JTB (ENSDNOG00000000740) #28	CREB3L4 (ENSDNOG00000042769) #29	SLC39A1 (ENSDNOG00000048628) #30	DENND4B (ENSDNOG00000005950) #32	GATAD2B (ENSDNOG00000048326) #33	ENSDNOG00000034590	SLC27A3 (ENSDNOG00000036902) #34	INTS3 (ENSDNOG00000013903) #35	NPR1 (ENSDNOG00000000672) #36	ENSDNOG00000015220 #37	SNAPIN (ENSDNOG00000015216)	ENSDNOG00000046338
Armadillo	MODERN SPECIES	2336											PLEKHO2 (ENSDNOG00000034684)	PIF1 (ENSDNOG00000003780)	RBPMS2 (ENSDNOG00000048895)	OAZ2 (ENSDNOG00000037947)	ZNF609 (ENSDNOG00000040739)	ENSDNOG00000030638 #22	ENSDNOG00000038952	TRIP4 (ENSDNOG00000008654)	PCLAF (ENSDNOG00000041418)	ENSDNOG00000018857	ENSDNOG00000031206	SNX22 (ENSDNOG00000017270)	SNX1 (ENSDNOG00000019013)	CIAO2A (ENSDNOG00000025148)	DAPK2 (ENSDNOG00000036558)	ENSDNOG00000015233	HERC1 (ENSDNOG00000005556)	FBXL22 (ENSDNOG00000005549)	USP3 (ENSDNOG00000005529)	CA12 (ENSDNOG00000043949)
Sloth	MODERN SPECIES	4946																C1orf43 (ENSCHOG00000010531) #22	CFAP141 (ENSCHOG00000010526) #23
Afrotheria	ANCESTRAL SPECIES	36	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b.bb #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Afrotheria_a	ANCESTRAL SPECIES	37	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00390000003453.b.b.bb #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37	ENSGT00390000008274
Elephant	MODERN SPECIES	325	CKS1B (ENSLAFG00000032213)	SHC1 (ENSLAFG00000009887) #7	PYGO2 (ENSLAFG00000009884) #8	PBXIP1 (ENSLAFG00000031125) #9	PMVK (ENSLAFG00000009881) #10	KCNN3 (ENSLAFG00000010317) #11	ADAR (ENSLAFG00000017405) #12	CHRNB2 (ENSLAFG00000017397) #13	UBE2Q1 (ENSLAFG00000022032) #14	ENSLAFG00000014490 #15	SHE (ENSLAFG00000013009) #16	IL6R (ENSLAFG00000018023) #17	ATP8B2 (ENSLAFG00000014088) #18	HAX1 (ENSLAFG00000007168) #20	UBAP2L (ENSLAFG00000007160) #21	C1orf43 (ENSLAFG00000009524) #22	CFAP141 (ENSLAFG00000009523) #23	ENSLAFG00000007157 ##24	ENSLAFG00000029840	NUP210L (ENSLAFG00000007146) #25	ENSLAFG00000032079 #27	JTB (ENSLAFG00000017882) #28	CREB3L4 (ENSLAFG00000017875) #29	SLC39A1 (ENSLAFG00000022953) #30	CRTC2 (ENSLAFG00000018368) #31	DENND4B (ENSLAFG00000001088) #32	GATAD2B (ENSLAFG00000002667) #33	ENSLAFG00000029562	SLC27A3 (ENSLAFG00000002665) #34	INTS3 (ENSLAFG00000002663) #35	NPR1 (ENSLAFG00000002661) #36
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	18403																ENSETEG00000011334 #22
Tenrec	MODERN SPECIES	7010														ENSETEG00000001058 #21	ENSETEG00000001057	ENSETEG00000001056 #22	CFAP141 (ENSETEG00000001055) #23	TPM3 (ENSETEG00000001049) #24
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.g #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00950000182870.a.a.b.m #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.g #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Diprotodontia	ANCESTRAL SPECIES	30	ENSGT00950000182870.a.a.b.m #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.g #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Wallaby	MODERN SPECIES	5096														ENSMEUG00000002632 #20	UBAP2L (ENSMEUG00000002607) #21	C1orf43 (ENSMEUG00000002600) #22
Diprotodontia_a	ANCESTRAL SPECIES	28	ENSGT00950000182870.a.a.b.m #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324.`b #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.g #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000164559.B	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
koala	MODERN SPECIES	42	SHC1 (ENSPCIG00000021732) #7	PYGO2 (ENSPCIG00000021733) #8	ENSPCIG00000021734 #9	PMVK (ENSPCIG00000021735) #10	KCNN3 (ENSPCIG00000021737) #11	ADAR (ENSPCIG00000021738) #12	CHRNB2 (ENSPCIG00000021740) #13	UBE2Q1 (ENSPCIG00000021742) #14	TDRD10 (ENSPCIG00000021750) #15	SHE (ENSPCIG00000029263) #16	IL6R (ENSPCIG00000029266) #17	ATP8B2 (ENSPCIG00000029269) #18	AQP10 (ENSPCIG00000029277) #19	ENSPCIG00000029281 #20	UBAP2L (ENSPCIG00000029283) #21	ENSPCIG00000029289 #22	CFAP141 (ENSPCIG00000029294) #23	ENSPCIG00000029297 ##24	NUP210L (ENSPCIG00000029314) #25	ENSPCIG00000029349 ##26	RAB13 (ENSPCIG00000029350) #27	JTB (ENSPCIG00000029351) #28	CREB3L4 (ENSPCIG00000029352) #29	SLC39A1 (ENSPCIG00000037451) #30	CRTC2 (ENSPCIG00000029355) #31	DENND4B (ENSPCIG00000029356) #32	GATAD2B (ENSPCIG00000029357) #33	SLC27A3 (ENSPCIG00000029359) #34	INTS3 (ENSPCIG00000029360) #35	NPR1 (ENSPCIG00000029362) #36	ILF2 (ENSPCIG00000029363) #37
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1035	ENSVURG00010022221	ENSVURG00010022222	ENSVURG00010022225	ENSVURG00010022227 #7	ENSVURG00010022230 #8	ENSVURG00010022231 #10	ENSVURG00010022238 #11	ENSVURG00010022254 #12	ENSVURG00010022257 #13	ENSVURG00010022262 #14	ENSVURG00010022266 #16	ENSVURG00010022267 #17	ENSVURG00010022269 #18	ENSVURG00010022275 #20	ENSVURG00010022279 #21	ENSVURG00010022312 #22	ENSVURG00010022318 #23	ENSVURG00010022321 #24	ENSVURG00010022329 #25	ENSVURG00010022333 #25	ENSVURG00010022340 #26	ENSVURG00010022345 #27	ENSVURG00010022348 #28	ENSVURG00010022352 #29	ENSVURG00010022355 #30	ENSVURG00010022369 #31	ENSVURG00010022500 #32	ENSVURG00010022531 #33	ENSVURG00010022539	ENSVURG00010022547 #34	ENSVURG00010022591 #35
Common wonbat	MODERN SPECIES	1035	ENSVURG00010015770	CKS1B (ENSVURG00010015800)	ENSVURG00010015812 #7	ENSVURG00010015828 #8	PBXIP1 (ENSVURG00010015837) #9	ENSVURG00010015841 #10	ENSVURG00010015859 #11	ENSVURG00010015893 #12	ENSVURG00010015917 #13	ENSVURG00010015935 #14	ENSVURG00010015961 #16	ENSVURG00010015971 #17	ENSVURG00010015988 #18	ENSVURG00010016014 #20	ENSVURG00010016058 #21	ENSVURG00010016183 #22	ENSVURG00010016280 #23	ENSVURG00010016345 ##24	ENSVURG00010016798 #25	ENSVURG00010016807 #25	ENSVURG00010016824 ##26	ENSVURG00010016830 #27	ENSVURG00010016839 #28	ENSVURG00010016851 #29	ENSVURG00010016870 #30	ENSVURG00010016888 #31	ENSVURG00010016908 #32	ENSVURG00010016930 #33	ENSVURG00010016943	ENSVURG00010016954 #34	ENSVURG00010016964 #35
Common wonbat	MODERN SPECIES	2														ENSVURG00010000015	ENSVURG00010000014	ENSVURG00010000013 #22	ENSVURG00010000012
Marsupialia	ANCESTRAL SPECIES																	ENSGT00510000047366.h #22
Opossum	MODERN SPECIES	1	PYGO2 (ENSMODG00000017142) #8	PBXIP1 (ENSMODG00000017146) #9	ENSMODG00000039213	PMVK (ENSMODG00000017150) #10	KCNN3 (ENSMODG00000017155) #11	ADAR (ENSMODG00000017160) #12	CHRNB2 (ENSMODG00000017165) #13	UBE2Q1 (ENSMODG00000017185) #14	ENSMODG00000017190 #15	SHE (ENSMODG00000017195) #16	IL6R (ENSMODG00000017198) #17	ATP8B2 (ENSMODG00000017204) #18	AQP10 (ENSMODG00000017193) #19	ENSMODG00000017215 #20	UBAP2L (ENSMODG00000017227) #21	C1orf43 (ENSMODG00000017237) #22	CFAP141 (ENSMODG00000017241) #23	TPM3 (ENSMODG00000017253) #24	ENSMODG00000041270 #25	ENSMODG00000017277 #25	RPS27 (ENSMODG00000017288) #26	ENSMODG00000050104 #27	RAB13 (ENSMODG00000017295) #27	JTB (ENSMODG00000017296) #28	CREB3L4 (ENSMODG00000017299) #29	SLC39A1 (ENSMODG00000017303) #30	CRTC2 (ENSMODG00000017314) #31	DENND4B (ENSMODG00000017327) #32	GATAD2B (ENSMODG00000017336) #33	ENSMODG00000017339	SLC27A3 (ENSMODG00000017345) #34
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00510000047366.h #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00510000047366.h #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00510000047366.h #22
koala	MODERN SPECIES	87	CSNK1D (ENSPCIG00000028077)	ENSPCIG00000028075	PECAM1 (ENSPCIG00000014423)	POLG2 (ENSPCIG00000014426)	DDX5 (ENSPCIG00000014428)	CEP95 (ENSPCIG00000019319)	SMURF2 (ENSPCIG00000019300)	KPNA2 (ENSPCIG00000016934)	ENSPCIG00000016932	ENSPCIG00000028186	ENSPCIG00000031275	ENSPCIG00000009665	BPTF (ENSPCIG00000009740)	NOL11 (ENSPCIG00000019293)	PITPNC1 (ENSPCIG00000019281)	ENSPCIG00000019289 #22	PSMD12 (ENSPCIG00000019279)	ENSPCIG00000019275	HELZ (ENSPCIG00000030106)	CACNG1 (ENSPCIG00000030132)	CACNG4 (ENSPCIG00000032605)	PRKCA (ENSPCIG00000030859)	APOH (ENSPCIG00000030142)	CEP112 (ENSPCIG00000030147)	AXIN2 (ENSPCIG00000006978)	RGS9 (ENSPCIG00000006984)	GNA13 (ENSPCIG00000006993)	ARSG (ENSPCIG00000007240)	SLC16A6 (ENSPCIG00000007002)	ENSPCIG00000035972	WIPI1 (ENSPCIG00000007241)
Common wonbat	MODERN SPECIES	1065									ENSVURG00010018460	ENSVURG00010018501	ENSVURG00010018504	ENSVURG00010018533	ENSVURG00010018641	ENSVURG00010018644	FLNA (ENSVURG00010018669)	ENSVURG00010018760 #22	ENSVURG00010018778	DNASE1L1 (ENSVURG00010018801)	TAFAZZIN (ENSVURG00010018809)	ENSVURG00010018815	GDI1 (ENSVURG00010018825)	ENSVURG00010018834	PLXNA3 (ENSVURG00010018841)	UBL4A (ENSVURG00010018854)	SLC10A3 (ENSVURG00010018859)	FAM3A (ENSVURG00010018864)	ENSVURG00010018900	G6PD (ENSVURG00010019009)	IKBKG (ENSVURG00010019077)	ENSVURG00010019093	ENSVURG00010019100
Tasmanian devil	MODERN SPECIES	3	SHC1 (ENSSHAG00000004522) #7	PYGO2 (ENSSHAG00000030130) #8	PBXIP1 (ENSSHAG00000004099) #9	PMVK (ENSSHAG00000003073) #10	KCNN3 (ENSSHAG00000014853) #11	ADAR (ENSSHAG00000014641) #12	CHRNB2 (ENSSHAG00000030324) #13	UBE2Q1 (ENSSHAG00000014499) #14	ENSSHAG00000014322 #15	SHE (ENSSHAG00000014260) #16	ENSSHAG00000013873 #17	ATP8B2 (ENSSHAG00000013410) #18	AQP10 (ENSSHAG00000029434) #19	HAX1 (ENSSHAG00000030979) #20	UBAP2L (ENSSHAG00000012970) #21	C1orf43 (ENSSHAG00000031289) #22	CFAP141 (ENSSHAG00000023557) #23	ENSSHAG00000011996 #25	TPM3 (ENSSHAG00000023396) ##24	ENSSHAG00000031629 ##26	RAB13 (ENSSHAG00000025661) #27	ENSSHAG00000028841 #28	CREB3L4 (ENSSHAG00000011761) #29	SLC39A1 (ENSSHAG00000011717) #30	CRTC2 (ENSSHAG00000011653) #31	DENND4B (ENSSHAG00000011553) #32	GATAD2B (ENSSHAG00000011064) #33	ENSSHAG00000010940	INTS3 (ENSSHAG00000010628) #35	NPR1 (ENSSHAG00000010248) #36	ILF2 (ENSSHAG00000010138) #37
Platypus	MODERN SPECIES	88	SLC50A1 (ENSOANG00000036223)	DPM3 (ENSOANG00000014159)	ENSOANG00000045092	TRIM46 (ENSOANG00000040420)	ENSOANG00000041692	THBS3 (ENSOANG00000047617)	ENSOANG00000042051	GBA1 (ENSOANG00000049670)	KCNN3 (ENSOANG00000042226) #11	ENSOANG00000041806 #12	CHRNB2 (ENSOANG00000043117) #13	UBE2Q1 (ENSOANG00000040300) #14	SHE (ENSOANG00000042620) #16	ENSOANG00000039261 #17	ATP8B2 (ENSOANG00000043003) #18	ENSOANG00000048977 #22	HAX1 (ENSOANG00000002864) #20	UBAP2L (ENSOANG00000044864) ##21	ENSOANG00000036193 ##24	NUP210L (ENSOANG00000050351) #25	ENSOANG00000048281 ##26	ENSOANG00000043103 #27	ENSOANG00000042510 #28	SLC39A1 (ENSOANG00000038851) #30	ENSOANG00000047792 #31	ENSOANG00000045078 #32	S100A2 (ENSOANG00000014147)	GATAD2B (ENSOANG00000046984) #33	SLC27A3 (ENSOANG00000039624) #34	INTS3 (ENSOANG00000041303) #35	NPR1 (ENSOANG00000043712) #36
Sauria	ANCESTRAL SPECIES	28	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Lepidosauria	ANCESTRAL SPECIES	42	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Episquamata	ANCESTRAL SPECIES	17	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000161896	ENSGT00940000161986	ENSGT00940000161276.C	ENSGT00940000161959	ENSGT00940000161276.A.d
Toxicofera	ANCESTRAL SPECIES	58													ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00940000167924	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000161896	ENSGT00940000161986	ENSGT00940000161276.C	ENSGT01000000217396
Elapidae	ANCESTRAL SPECIES	56													ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000161896	ENSGT00940000161986	ENSGT00940000161276.C	ENSGT01000000217396	ENSGT00940000161276.A.d
Indian cobra	MODERN SPECIES	17	EFNA1 (ENSNNAG00000009765)	SLC50A1 (ENSNNAG00000009779)	DPM3 (ENSNNAG00000009824)	KRTCAP2 (ENSNNAG00000009844)	TRIM46 (ENSNNAG00000009869)	SHE (ENSNNAG00000009890) #16	UBE2Q1 (ENSNNAG00000003871) #14	TDRD10 (ENSNNAG00000003995) #15	CHRNB2 (ENSNNAG00000004059) #13	ENSNNAG00000004099 #12	PYGO2 (ENSNNAG00000004117) #8	SHC1 (ENSNNAG00000004146) #7	CKS1B (ENSNNAG00000004173)	FLAD1 (ENSNNAG00000004180)	UBAP2L (ENSNNAG00000004202) ##21	C1orf43 (ENSNNAG00000004233) #22	RPS27 (ENSNNAG00000004280) #26	ENSNNAG00000004299 #25	SLC39A1 (ENSNNAG00000004344) #30	ENSNNAG00000004357 ##31	ENSNNAG00000004408	ENSNNAG00000004599	EML3 (ENSNNAG00000004618)	INTS5 (ENSNNAG00000004637)	C11orf98 (ENSNNAG00000004644)	POLR2G (ENSNNAG00000004665)	ENSNNAG00000004696	ENSNNAG00000004712	ENSNNAG00000004773	TTC9C (ENSNNAG00000004780)	HNRNPUL2 (ENSNNAG00000004797)
Elapidae_a	ANCESTRAL SPECIES	124													ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000161896	ENSGT00940000161986	ENSGT00940000161276.C	ENSGT01000000217396	ENSGT00940000161276.A.d
Acanthophiinae	ANCESTRAL SPECIES	181														ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26
Eastern brown snake	MODERN SPECIES	375													SHE (ENSPTXG00000016662) #16	ENSPTXG00000016661 #17	ENSPTXG00000016659 #18	C1orf43 (ENSPTXG00000016588) #22	ENSPTXG00000016584 ##24
Mainland tiger snake	MODERN SPECIES	544															UBAP2L (ENSNSUG00000014531) #21	C1orf43 (ENSNSUG00000014529) #22	ENSNSUG00000014528 ##24	ENSNSUG00000014526 #25	ENSNSUG00000014525 #25	RPS27 (ENSNSUG00000014524) #26	SLC39A1 (ENSNSUG00000014523) #30	CRTC2 (ENSNSUG00000014522) #31	S100A6 (ENSNSUG00000014521)
Blue-lipped sea krait	MODERN SPECIES	4476													AQP10 (ENSLLTG00000013076) #19	HAX1 (ENSLLTG00000013067) #20	UBAP2L (ENSLLTG00000013033) #21	C1orf43 (ENSLLTG00000013023) #22	ENSLLTG00000013016 ##24
Lizard	MODERN SPECIES	1775																ENSACAG00000041451 #22	ENSACAG00000010562 ##24
Laterata	ANCESTRAL SPECIES	25	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000161896	ENSGT00940000161986	ENSGT00940000161276.C	ENSGT00940000161959	ENSGT00940000161276.A.d	ENSGT00940000161276.A.c.a
Common wall lizard	MODERN SPECIES	7	PBXIP1 (ENSPMRG00000015884) #9	PMVK (ENSPMRG00000015873) #10	KCNN3 (ENSPMRG00000015860) #11	ADAR (ENSPMRG00000015826) #12	CHRNB2 (ENSPMRG00000015817) #13	UBE2Q1 (ENSPMRG00000015807) #14	TDRD10 (ENSPMRG00000015796) #15	SHE (ENSPMRG00000015789) #16	IL6R (ENSPMRG00000015769) #17	ENSPMRG00000015406 #18	ENSPMRG00000015339 #19	ENSPMRG00000015328 #18	ENSPMRG00000015320 #19	HAX1 (ENSPMRG00000015309) #20	UBAP2L (ENSPMRG00000015282) #21	C1orf43 (ENSPMRG00000015273) #22	TPM3 (ENSPMRG00000015242) #24	NUP210L (ENSPMRG00000014849) #25	RPS27 (ENSPMRG00000014772) #26	RAB13 (ENSPMRG00000014759) #27	ENSPMRG00000014755	CRTC2 (ENSPMRG00000014741) #31	ENSPMRG00000014730	ENSPMRG00000014728	ENSPMRG00000014724	S100A4 (ENSPMRG00000014722)	S100A3 (ENSPMRG00000014718)	ENSPMRG00000014713	ENSPMRG00000014704	ENSPMRG00000014694	ENSPMRG00000014690
Argentine black and white tegu	MODERN SPECIES	80	PYGO2 (ENSSMRG00000006731) #8	PBXIP1 (ENSSMRG00000006721) #9	PMVK (ENSSMRG00000006660) #10	KCNN3 (ENSSMRG00000005937) #11	ENSSMRG00000005934 #12	ENSSMRG00000005928 #12	CHRNB2 (ENSSMRG00000005913) #13	UBE2Q1 (ENSSMRG00000005906) #14	TDRD10 (ENSSMRG00000005890) #15	SHE (ENSSMRG00000005885) #16	IL6R (ENSSMRG00000005883) #17	ATP8B2 (ENSSMRG00000002759) #18	AQP10 (ENSSMRG00000002755) #19	HAX1 (ENSSMRG00000002695) #20	UBAP2L (ENSSMRG00000002689) #21	C1orf43 (ENSSMRG00000002686) #22	TPM3 (ENSSMRG00000002679) #24	NUP210L (ENSSMRG00000000911) #25	RPS27 (ENSSMRG00000000863) #26	RAB13 (ENSSMRG00000000852) #27	JTB (ENSSMRG00000000849) #28	ENSSMRG00000000830	ENSSMRG00000000819	ENSSMRG00000000782 #29	SLC39A1 (ENSSMRG00000000768) #30	CRTC2 (ENSSMRG00000000740) #31	ENSSMRG00000000737	S100A5 (ENSSMRG00000000726)	S100A4 (ENSSMRG00000000715)	S100A3 (ENSSMRG00000000707)	ENSSMRG00000000701
tuatara	MODERN SPECIES	712	SHC1 (ENSSPUG00000002652) #7	ENSSPUG00000002677	PMVK (ENSSPUG00000002684) #10	KCNN3 (ENSSPUG00000002698) #11	ADAR (ENSSPUG00000002795) #12	CHRNB2 (ENSSPUG00000002857) #13	UBE2Q1 (ENSSPUG00000002882) #14	ENSSPUG00000002924 #15	SHE (ENSSPUG00000002939) #16	IL6R (ENSSPUG00000002958) #17	ENSSPUG00000002966	ENSSPUG00000002979 #18	AQP10 (ENSSPUG00000002987) #19	HAX1 (ENSSPUG00000003002) #20	UBAP2L (ENSSPUG00000003072) #21	C1orf43 (ENSSPUG00000003367) #22	TPM3 (ENSSPUG00000003389) #24	ENSSPUG00000003408 #25	ENSSPUG00000003437 ##26	JTB (ENSSPUG00000003456) #28	ENSSPUG00000003512 #29	ENSSPUG00000003536	SLC39A1 (ENSSPUG00000003569) #30	ENSSPUG00000003571 ##31	ENSSPUG00000003579 #31	DENND4B (ENSSPUG00000003595) #32	GATAD2B (ENSSPUG00000003654) #33	NPR1 (ENSSPUG00000003718) #36	ENSSPUG00000003820	ILF2 (ENSSPUG00000003834) #37	SNAPIN (ENSSPUG00000003848)
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00530000063948.a #8	ENSGT00960000187391	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00960000188896	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.E ##31	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00950000182891.a.a.b.a.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00960000188896	ENSGT00940000160806 #29	ENSGT00960000191123	ENSGT00940000157062 #30	ENSGT00390000010652.E ##31	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33
Emydidae	ANCESTRAL SPECIES	18	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00950000182891.a.a.b.a.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00960000188896	ENSGT00940000160806 #29	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073.b #34	ENSGT00390000014184 #35	ENSGT00940000165154
painted turtle	MODERN SPECIES	785						ADAR (ENSCPBG00000024639) #12	CHRNB2 (ENSCPBG00000024641) #13	UBE2Q1 (ENSCPBG00000024646) #14	TDRD10 (ENSCPBG00000024650) #15	SHE (ENSCPBG00000024652) #16	IL6R (ENSCPBG00000024655) #17	ATP8B2 (ENSCPBG00000024657) #18	HAX1 (ENSCPBG00000024658) #20	ENSCPBG00000024659	UBAP2L (ENSCPBG00000024662) #21	C1orf43 (ENSCPBG00000024665) #22	ENSCPBG00000024666	ENSCPBG00000024668 ##24	ENSCPBG00000024674 #25	ENSCPBG00000024675 ##26	RAB13 (ENSCPBG00000024676) #27	JTB (ENSCPBG00000024677) #28	ENSCPBG00000024678	CREB3L4 (ENSCPBG00000024679) #29	CRTC2 (ENSCPBG00000024681) #31	DENND4B (ENSCPBG00000024683) #32	GATAD2B (ENSCPBG00000024687) #33	ENSCPBG00000024688	SLC27A3 (ENSCPBG00000024690) #34	INTS3 (ENSCPBG00000024695) #35	ENSCPBG00000024759
Three-toed box turtle	MODERN SPECIES	178	SHC1 (ENSTMTG00000016543) #7	PYGO2 (ENSTMTG00000016535) #8	PBXIP1 (ENSTMTG00000016509) #9	PMVK (ENSTMTG00000016500) #10	KCNN3 (ENSTMTG00000016437) #11	ADAR (ENSTMTG00000016352) #12	CHRNB2 (ENSTMTG00000016265) #13	UBE2Q1 (ENSTMTG00000016228) #14	TDRD10 (ENSTMTG00000016167) #15	SHE (ENSTMTG00000016147) #16	IL6R (ENSTMTG00000016126) #17	ATP8B2 (ENSTMTG00000016071) #18	HAX1 (ENSTMTG00000016047) #20	ENSTMTG00000016036	UBAP2L (ENSTMTG00000015876) #21	C1orf43 (ENSTMTG00000015852) #22	ENSTMTG00000015837 ##24	TPM3 (ENSTMTG00000015823) #24	ENSTMTG00000015798 #25	ENSTMTG00000015758 #25	RPS27 (ENSTMTG00000015743) #26	JTB (ENSTMTG00000015727) #28	ENSTMTG00000015717	CREB3L4 (ENSTMTG00000015696) #29	CRTC2 (ENSTMTG00000015662) #31	GATAD2B (ENSTMTG00000015633) #33	ENSTMTG00000015589	ENSTMTG00000015579	INTS3 (ENSTMTG00000015535) #35	CHTOP (ENSTMTG00000015517)	S100A1 (ENSTMTG00000015510)
Testudinidae	ANCESTRAL SPECIES	51	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.b ##26
Goode s thornscrub tortoise	MODERN SPECIES	16	SHC1 (ENSGEVG00005011859) #7	PYGO2 (ENSGEVG00005011920) #8	PBXIP1 (ENSGEVG00005011960) #9	PMVK (ENSGEVG00005012009) #10	KCNN3 (ENSGEVG00005012128) #11	ADAR (ENSGEVG00005012932) #12	CHRNB2 (ENSGEVG00005012987) #13	UBE2Q1 (ENSGEVG00005013160) #14	TDRD10 (ENSGEVG00005013230) #15	SHE (ENSGEVG00005013259) #16	IL6R (ENSGEVG00005013288) #17	ATP8B2 (ENSGEVG00005013340) #18	HAX1 (ENSGEVG00005013424) #20	ENSGEVG00005013499	UBAP2L (ENSGEVG00005013577) #21	C1orf43 (ENSGEVG00005013736) #22	ENSGEVG00005013759 ##24	TPM3 (ENSGEVG00005013822) #24	NUP210L (ENSGEVG00005014093) #25	ENSGEVG00005015370 ##26	RAB13 (ENSGEVG00005015392) #27	JTB (ENSGEVG00005015440) #28	ENSGEVG00005015507	CREB3L4 (ENSGEVG00005015544) #29	SLC39A1 (ENSGEVG00005015646) #30	CRTC2 (ENSGEVG00005015671) #31	GATAD2B (ENSGEVG00005016160) #33	ENSGEVG00005016320	SLC27A3 (ENSGEVG00005016469) #34	INTS3 (ENSGEVG00005016655) #35	ENSGEVG00005016720
Abingdon island giant tortoise	MODERN SPECIES	1771								UBE2Q1 (ENSCABG00000003628) #14	TDRD10 (ENSCABG00000003626) #15	SHE (ENSCABG00000003625) #16	IL6R (ENSCABG00000003620) #17	ATP8B2 (ENSCABG00000003560) #18	ENSCABG00000003548 #20	ENSCABG00000003546	UBAP2L (ENSCABG00000003542) #21	C1orf43 (ENSCABG00000003541) #22	ENSCABG00000003540 ##24	TPM3 (ENSCABG00000003539) #24	ENSCABG00000003538 #25	ENSCABG00000003537 #25	RPS27 (ENSCABG00000003532) #26	RAB13 (ENSCABG00000003402) #27	ENSCABG00000003394	ENSCABG00000003390	ENSCABG00000003388	SLC39A1 (ENSCABG00000003385) #30	CRTC2 (ENSCABG00000003377) #31	DENND4B (ENSCABG00000002985) #32	GATAD2B (ENSCABG00000002971) #33	ENSCABG00000002960	SLC27A3 (ENSCABG00000002958) #34
Chinese turtle	MODERN SPECIES	1830															UBAP2L (ENSPSIG00000017055) #21	C1orf43 (ENSPSIG00000017021) #22	ENSPSIG00000001276	TPM3 (ENSPSIG00000017014) #24	RPS27 (ENSPSIG00000017003) #26	NUP210L (ENSPSIG00000016684) #25
Archosauria	ANCESTRAL SPECIES	28	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Australian saltwater crocodile	MODERN SPECIES	25	UBE2Q1 (ENSCPRG00005013748) #14	CHRNB2 (ENSCPRG00005013754) #13	ADAR (ENSCPRG00005013761) #12	ENSCPRG00005013765	KCNN3 (ENSCPRG00005013768) #11	PMVK (ENSCPRG00005013773) #10	PBXIP1 (ENSCPRG00005013781) #9	PYGO2 (ENSCPRG00005013783) #8	SHC1 (ENSCPRG00005013788) #7	CKS1B (ENSCPRG00005013794)	FLAD1 (ENSCPRG00005013796)	ATP8B2 (ENSCPRG00005013833) #18	ENSCPRG00005014057	ENSCPRG00005014059 #20	UBAP2L (ENSCPRG00005000060) #21	C1orf43 (ENSCPRG00005000715) #22	ENSCPRG00005001020 ##24	NUP210L (ENSCPRG00005002240) #25	RPS27 (ENSCPRG00005002458) #26	RAB13 (ENSCPRG00005002474) #27	JTB (ENSCPRG00005002527) #28	ENSCPRG00005002531 #29	SLC39A1 (ENSCPRG00005002532) #30	ENSCPRG00005002537	ENSCPRG00005002542	ENSCPRG00005002545	ENSCPRG00005002550	ADAM15 (ENSCPRG00005002552)	EFNA4 (ENSCPRG00005002563)	EFNA3 (ENSCPRG00005002569)	EFNA1 (ENSCPRG00005002572)
Aves	ANCESTRAL SPECIES	31	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
African ostrich	MODERN SPECIES	466															UBAP2L (ENSSCUG00000007883) #21	C1orf43 (ENSSCUG00000007894) #22	ENSSCUG00000007897 #24	NUP210L (ENSSCUG00000007898) #25	RPS27 (ENSSCUG00000007900) ##26	CRTC2 (ENSSCUG00000007901) #31	GATAD2B (ENSSCUG00000007903) #33	INTS3 (ENSSCUG00000007928) #35	ILF2 (ENSSCUG00000007963) #37	ENSSCUG00000007964	CHTOP (ENSSCUG00000007965)
Neognathae	ANCESTRAL SPECIES	28	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.E ##31	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36
Neognathae_b	ANCESTRAL SPECIES	33	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.E ##31	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37	ENSGT00390000008274
Passeriformes	ANCESTRAL SPECIES	37	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000002390.b	ENSGT00940000154566	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509	ENSGT00940000157244	ENSGT00940000161732	ENSGT00940000165149	ENSGT00940000158230	ENSGT00390000006100	ENSGT00940000155620	ENSGT00390000008765
Great tit	MODERN SPECIES	17	FLAD1 (ENSPMJG00000000781)	CKS1B (ENSPMJG00000000778)	SHC1 (ENSPMJG00000000735) #7	PYGO2 (ENSPMJG00000000730) #8	PBXIP1 (ENSPMJG00000000711) #9	KCNN3 (ENSPMJG00000000707) #11	ADAR (ENSPMJG00000000663) #12	CHRNB2 (ENSPMJG00000000651) #13	UBE2Q1 (ENSPMJG00000000644) #14	SHE (ENSPMJG00000000635) #16	IL6R (ENSPMJG00000000621) #17	ATP8B2 (ENSPMJG00000000586) #18	AQP10 (ENSPMJG00000000574) #19	HAX1 (ENSPMJG00000000564) #20	UBAP2L (ENSPMJG00000000484) #21	C1orf43 (ENSPMJG00000000460) #22	ENSPMJG00000000449 ##24	TPM3 (ENSPMJG00000000373) #24	TMEM79 (ENSPMJG00000000349)	SMG5 (ENSPMJG00000000283)	ENSPMJG00000000280	PMF1 (ENSPMJG00000000278)	SLC25A44 (ENSPMJG00000000271)	SEMA4A (ENSPMJG00000000261)	LMNA (ENSPMJG00000000245)	MEX3A (ENSPMJG00000000236)	ENSPMJG00000000220	RAB25 (ENSPMJG00000000212)	UBQLN4 (ENSPMJG00000000181)	GPATCH4 (ENSPMJG00000000160)	ENSPMJG00000000065
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01090000262236	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000002390.b	ENSGT00940000154566.i	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509	ENSGT00940000157244	ENSGT00940000161732	ENSGT00940000165149	ENSGT00940000158230	ENSGT00390000006100	ENSGT00940000155620
Flycatcher	MODERN SPECIES	17	CKS1B (ENSFALG00000024948)	SHC1 (ENSFALG00000001262) #7	PYGO2 (ENSFALG00000015227) #8	PBXIP1 (ENSFALG00000001259) #9	PMVK (ENSFALG00000024139) #10	KCNN3 (ENSFALG00000001246) #11	ADAR (ENSFALG00000001232) #12	CHRNB2 (ENSFALG00000001220) #13	UBE2Q1 (ENSFALG00000001215) #14	SHE (ENSFALG00000001203) #16	IL6R (ENSFALG00000028652) #17	ATP8B2 (ENSFALG00000001195) #18	AQP10 (ENSFALG00000001191) #19	HAX1 (ENSFALG00000001188) #20	UBAP2L (ENSFALG00000001181) #21	C1orf43 (ENSFALG00000001179) #22	ENSFALG00000027484	TPM3 (ENSFALG00000001175) #24	ENSFALG00000001170	ENSFALG00000001166
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01090000262236	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000002390.b	ENSGT00940000154566.i	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509	ENSGT00940000157244	ENSGT00940000161732	ENSGT00940000165149	ENSGT00940000158230	ENSGT00390000006100	ENSGT00940000155620
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01090000262236	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000002390.b	ENSGT00940000154566.i	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509	ENSGT00940000157244	ENSGT00940000161732	ENSGT00940000165149	ENSGT00940000158230	ENSGT00390000006100	ENSGT00940000155620
Common canary	MODERN SPECIES	81	ZBTB7B (ENSSCAG00000012768)	ENSSCAG00000012771	FLAD1 (ENSSCAG00000012777)	SHC1 (ENSSCAG00000012782) #7	PBXIP1 (ENSSCAG00000012790) #9	KCNN3 (ENSSCAG00000012817) #11	ADAR (ENSSCAG00000012907) #12	CHRNB2 (ENSSCAG00000012910) #13	UBE2Q1 (ENSSCAG00000012918) #14	SHE (ENSSCAG00000012923) #16	IL6R (ENSSCAG00000012928) #17	ATP8B2 (ENSSCAG00000012942) #18	AQP10 (ENSSCAG00000012955) #19	HAX1 (ENSSCAG00000012964) #20	UBAP2L (ENSSCAG00000012983) #21	C1orf43 (ENSSCAG00000013023) #22	ENSSCAG00000013039 ##24	TMEM79 (ENSSCAG00000013060)	SMG5 (ENSSCAG00000013067)	BGLAP (ENSSCAG00000013078)	PMF1 (ENSSCAG00000013084)	SLC25A44 (ENSSCAG00000013089)	SEMA4A (ENSSCAG00000013096)	LMNA (ENSSCAG00000013107)	MEX3A (ENSSCAG00000013118)	ENSSCAG00000013124	RAB25 (ENSSCAG00000013131)	LAMTOR2 (ENSSCAG00000013138)	UBQLN4 (ENSSCAG00000013141)	ENSSCAG00000013149	NAXE (ENSSCAG00000013155)
Zebra finch	MODERN SPECIES	18					ENSTGUG00000014870	ENSTGUG00000019657	ENSTGUG00000019933	ENSTGUG00000004268	ENSTGUG00000028717	ENSTGUG00000022396	ENSTGUG00000026384	CCT3 (ENSTGUG00000004232)	ENSTGUG00000004220	ENSTGUG00000023566	ZBTB7B (ENSTGUG00000020643)	C1orf43 (ENSTGUG00000003819) #22	ENSTGUG00000026230	FLAD1 (ENSTGUG00000004205)	CKS1B (ENSTGUG00000019644)	SHC1 (ENSTGUG00000004152) #7	PYGO2 (ENSTGUG00000027449) #8	PBXIP1 (ENSTGUG00000025186) #9	PMVK (ENSTGUG00000027579) #10	KCNN3 (ENSTGUG00000024010) #11	ADAR (ENSTGUG00000004105) #12	CHRNB2 (ENSTGUG00000004092) #13	UBE2Q1 (ENSTGUG00000004068) #14	SHE (ENSTGUG00000004055) #16	IL6R (ENSTGUG00000024535) #17	ATP8B2 (ENSTGUG00000003921) #18	AQP10 (ENSTGUG00000020695) #19
Medium ground finch	MODERN SPECIES	247	FLAD1 (ENSGFOG00000010451)	CKS1B (ENSGFOG00000010444)	SHC1 (ENSGFOG00000010435) #7	ENSGFOG00000010428	PMVK (ENSGFOG00000010424) #10	KCNN3 (ENSGFOG00000010391) #11	ADAR (ENSGFOG00000010376) #12	CHRNB2 (ENSGFOG00000010362) #13	UBE2Q1 (ENSGFOG00000010349) #14	SHE (ENSGFOG00000010337) #16	IL6R (ENSGFOG00000010325) #17	ATP8B2 (ENSGFOG00000010292) #18	AQP10 (ENSGFOG00000010284) #19	ENSGFOG00000010280 #20	UBAP2L (ENSGFOG00000010247) #21	C1orf43 (ENSGFOG00000010231) #22	TPM3 (ENSGFOG00000010212) #24	TMEM79 (ENSGFOG00000010207)	SMG5 (ENSGFOG00000010189)	SLC25A44 (ENSGFOG00000010182)	SEMA4A (ENSGFOG00000010172)	LMNA (ENSGFOG00000010161)	MEX3A (ENSGFOG00000010158)	ENSGFOG00000010153	RAB25 (ENSGFOG00000010146)	LAMTOR2 (ENSGFOG00000010143)	UBQLN4 (ENSGFOG00000010134)	NAXE (ENSGFOG00000010126)	ENSGFOG00000010121	IQGAP3 (ENSGFOG00000010097)	MEF2D (ENSGFOG00000010083)
Neognathae_c	ANCESTRAL SPECIES	33	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000005125	ENSGT00570000079224	ENSGT00390000005131	ENSGT00390000002390.b	ENSGT00940000154566	ENSGT00940000160567	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509.c	ENSGT00940000157244	ENSGT00940000161732	ENSGT00940000165149
Kakapo	MODERN SPECIES	60	SHC1 (ENSSHBG00005016875) #7	PYGO2 (ENSSHBG00005016882) #8	PBXIP1 (ENSSHBG00005016894) #9	PMVK (ENSSHBG00005016909) #10	KCNN3 (ENSSHBG00005016916) #11	ADAR (ENSSHBG00005016925) #12	CHRNB2 (ENSSHBG00005016930) #13	UBE2Q1 (ENSSHBG00005016943) #14	SHE (ENSSHBG00005016951) #16	IL6R (ENSSHBG00005016959) #17	ATP8B2 (ENSSHBG00005017006) #18	AQP10 (ENSSHBG00005017184) #19	HAX1 (ENSSHBG00005017197) #20	UBAP2L (ENSSHBG00005017214) #21	TPM3 (ENSSHBG00005017226) #24	C1orf43 (ENSSHBG00005017235) #22	ENSSHBG00005017239 ##24	ENSSHBG00005017244	ENSSHBG00005017250	NEU1 (ENSSHBG00005017256)	ENSSHBG00005017259	ENSSHBG00005017261	ENSSHBG00005017264	RAB13 (ENSSHBG00005017268) #27	RPS27 (ENSSHBG00005017273) #26	JTB (ENSSHBG00005017276) #28	CREB3L4 (ENSSHBG00005017279) #29	SLC39A1 (ENSSHBG00005017282) #30	ENSSHBG00005017285 ##31	INTS3 (ENSSHBG00005017291) #35	ENSSHBG00005017317
Golden eagle	MODERN SPECIES	25	CKS1B (ENSACCG00020008608)	SHC1 (ENSACCG00020008593) #7	PYGO2 (ENSACCG00020008581) #8	ENSACCG00020008562	PMVK (ENSACCG00020008535) #10	KCNN3 (ENSACCG00020008522) #11	ADAR (ENSACCG00020008502) #12	CHRNB2 (ENSACCG00020008474) #13	UBE2Q1 (ENSACCG00020008458) #14	SHE (ENSACCG00020008450) #16	IL6R (ENSACCG00020008435) #17	ATP8B2 (ENSACCG00020008415) #18	AQP10 (ENSACCG00020008387) #19	HAX1 (ENSACCG00020008371) #20	UBAP2L (ENSACCG00020008313) #21	C1orf43 (ENSACCG00020008270) #22	ENSACCG00020002693 ##24	TPM3 (ENSACCG00020002664) #24	SSR2 (ENSACCG00020002642)	CCT3 (ENSACCG00020002624)	GLMP (ENSACCG00020002603)	TMEM79 (ENSACCG00020002589)	SMG5 (ENSACCG00020002562)	PAQR6 (ENSACCG00020002533)	ENSACCG00020002491	ENSACCG00020002471	SLC25A44 (ENSACCG00020002449)	SEMA4A (ENSACCG00020002423)	LMNA (ENSACCG00020002398)	MEX3A (ENSACCG00020002384)	ENSACCG00020002373
Galloanserae	ANCESTRAL SPECIES	31	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01090000262236	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000159989 #27	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000165154	ENSGT00940000154879 #37	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000160475	ENSGT00940000161854
Anatidae	ANCESTRAL SPECIES	51		ENSGT00960000189815	ENSGT00390000007266	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01090000262236	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000165154	ENSGT00940000154879 #37	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000161276.A
Pink-footed goose	MODERN SPECIES	438		ENSABRG00000019538	FLAD1 (ENSABRG00000019532)	SHC1 (ENSABRG00000019517) #7	PYGO2 (ENSABRG00000019514) #8	ENSABRG00000019510 #9	PMVK (ENSABRG00000019507) #10	KCNN3 (ENSABRG00000019499) #11	ADAR (ENSABRG00000019495) #12	CHRNB2 (ENSABRG00000019490) #13	UBE2Q1 (ENSABRG00000019484) #14	SHE (ENSABRG00000019481) #16	IL6R (ENSABRG00000019477) #17	ATP8B2 (ENSABRG00000019455) #18	UBAP2L (ENSABRG00000018427) #21	C1orf43 (ENSABRG00000018264) #22	TPM3 (ENSABRG00000017956) #24	NUP210L (ENSABRG00000017767) #25	JTB (ENSABRG00000017699) #28
Duck	MODERN SPECIES	17	MTX1 (ENSAPLG00000011453)	ENSAPLG00000009936	ENSAPLG00000016561	EFNA3 (ENSAPLG00000002157)	EFNA4 (ENSAPLG00000024261)	ZBTB7B (ENSAPLG00000023436)	SHC1 (ENSAPLG00000020291) #7	KCNN3 (ENSAPLG00000009776) #11	ADAR (ENSAPLG00000009658) #12	CHRNB2 (ENSAPLG00000009547) #13	UBE2Q1 (ENSAPLG00000009365) #14	SHE (ENSAPLG00000021210) #16	ENSAPLG00000022137 #18	IL6R (ENSAPLG00000023467) #17	UBAP2L (ENSAPLG00000015544) #21	C1orf43 (ENSAPLG00000015388) #22	ENSAPLG00000019678	TPM3 (ENSAPLG00000015228) #24	ENSAPLG00000017253	NUP210L (ENSAPLG00000014606) #25	ENSAPLG00000016453 #27	ENSAPLG00000021084	CHTOP (ENSAPLG00000009925)	ENSAPLG00000010003	S100A13 (ENSAPLG00000001014)	S100A14 (ENSAPLG00000010004)	ENSAPLG00000030555	S100A4 (ENSAPLG00000010031)	ENSAPLG00000021514	ENSAPLG00000024260	ENSAPLG00000023535
Phasianidae	ANCESTRAL SPECIES	32	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26
Japanese quail	MODERN SPECIES	17	FLAD1 (ENSCJPG00005014183)	ENSCJPG00005014184	CKS1B (ENSCJPG00005014185)	SHC1 (ENSCJPG00005014186) #7	PYGO2 (ENSCJPG00005014187) #8	ENSCJPG00005014188	PMVK (ENSCJPG00005014189) #10	KCNN3 (ENSCJPG00005014190) #11	ADAR (ENSCJPG00005014192) #12	CHRNB2 (ENSCJPG00005014193) #13	UBE2Q1 (ENSCJPG00005014194) #14	SHE (ENSCJPG00005014195) #16	IL6R (ENSCJPG00005014205) #17	ATP8B2 (ENSCJPG00005014206) #18	UBAP2L (ENSCJPG00005014213) #21	C1orf43 (ENSCJPG00005014214) #22	TPM3 (ENSCJPG00005014215) #24	NUP210L (ENSCJPG00005014216) #25	ENSCJPG00005014217 ##26	JTB (ENSCJPG00005014218) #28	ENSCJPG00005014219 ##31	ENSCJPG00005014220	CLK2 (ENSCJPG00005014221)	ENSCJPG00005014222	ENSCJPG00005014231	ENSCJPG00005014235	ASH1L (ENSCJPG00005014237)	DAP3 (ENSCJPG00005014238)	MSTO1 (ENSCJPG00005014239)	ENSCJPG00005014240	SYT11 (ENSCJPG00005015080)
Phasianidae_b	ANCESTRAL SPECIES	31	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b #7	ENSGT00530000063948.a #8	ENSGT00940000162147 #9	ENSGT00390000014801 #10	ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00940000160166 #14	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT01030000234542.b.a.a.a.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a #26	ENSGT00940000161073 #34	ENSGT00390000004097.b #33
Chicken	MODERN SPECIES	17	CKS1B (ENSGALG00010027926)	SHC1 (ENSGALG00010027922) #7	PYGO2 (ENSGALG00010027913) #8	PBXIP1 (ENSGALG00010027908) #9	PMVK (ENSGALG00010027899) #10	KCNN3 (ENSGALG00010027534) #11	ADAR (ENSGALG00010027916) #12	CHRNB2 (ENSGALG00010027910) #13	UBE2Q1 (ENSGALG00010027902) #14	SHE (ENSGALG00010027892) #16	IL6R (ENSGALG00010027886) #17	ATP8B2 (ENSGALG00010027883) #18	AQP10 (ENSGALG00010027878) #19	HAX1 (ENSGALG00010027870) #20	UBAP2L (ENSGALG00010027867) #21	C1orf43 (ENSGALG00010028262) #22	TPM3 (ENSGALG00010027391) #24	NUP210L (ENSGALG00010027370) #25	RPS27 (ENSGALG00010027362) #26	ENSGALG00010027359	ENSGALG00010027356 #34	GATAD2B (ENSGALG00010028211) #33	INTS3 (ENSGALG00010028197) #35	ENSGALG00010028194	ILF2 (ENSGALG00010028190) #37	ENSGALG00010028188	CHTOP (ENSGALG00010028442)	S100A1 (ENSGALG00010028436)	ENSGALG00010028431	ENSGALG00010028427	ENSGALG00010028416
Turkey	MODERN SPECIES	1093									ENSMGAG00000013077	DEDD (ENSMGAG00000013079)	ENSMGAG00000021669	PFDN2 (ENSMGAG00000013087)	ENSMGAG00000016861	AQP10 (ENSMGAG00000013088) #19	UBAP2L (ENSMGAG00000013090) #21	C1orf43 (ENSMGAG00000013095) #22	ENSMGAG00000013097 ##24	NUP210L (ENSMGAG00000013101) #25	RPS27 (ENSMGAG00000018096) #26
Anura	ANCESTRAL SPECIES	190							ENSGT00950000182904.a.a.a #11	ENSGT00940000157243 #12	ENSGT00940000158417.b #13	ENSGT00390000006620 #15	ENSGT00940000159107 #16	ENSGT00940000161919 #17	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT01030000234542.b.a.a.b.a.b ##24	ENSGT00950000182891.a.a.b.a.b.b ##26	ENSGT00940000159989 #27	ENSGT00390000016136 #28	ENSGT00390000018319.a.a	ENSGT00390000018319.b.b	ENSGT00940000160806 #29
Frog	MODERN SPECIES	8	lmna (ENSXETG00000024161)	ENSXETG00000043762	mex3a (ENSXETG00000012704)	klhdc9 (ENSXETG00000012703)	pfdn2 (ENSXETG00000040839)	nit1 (ENSXETG00000012699)	ENSXETG00000041733	ENSXETG00000041583	hax1 (ENSXETG00000030686) #20	ENSXETG00000049031	ENSXETG00000041624	ENSXETG00000033258	ENSXETG00000032437	ENSXETG00000003406	ubap2l (ENSXETG00000015342) #21	c1orf43 (ENSXETG00000020733) #22	cfap141 (ENSXETG00000038540)	tpm3 (ENSXETG00000020732) ##24	rps27 (ENSXETG00000046108) ##26	rab13 (ENSXETG00000020729) #27	JTB (ENSXETG00000047205) #28	ENSXETG00000045205	ENSXETG00000043571	creb3l4 (ENSXETG00000002133) #29	lingo4 (ENSXETG00000002132)	rorc (ENSXETG00000002131)	ENSXETG00000046875	ENSXETG00000047086	THEM4 (ENSXETG00000036041)	s100a10 (ENSXETG00000043586)	s100a11 (ENSXETG00000008324)
Leishan spiny toad	MODERN SPECIES	4	ENSLLEG00000015219	LMNA (ENSLLEG00000024512)	ENSLLEG00000024433	SEMA4A (ENSLLEG00000024301)	ENSLLEG00000024273	KCNN3 (ENSLLEG00000024129) #11	ENSLLEG00000024069	ADAR (ENSLLEG00000022684) #12	CHRNB2 (ENSLLEG00000022363) #13	ENSLLEG00000022295	SHE (ENSLLEG00000022092) #16	ENSLLEG00000022061	IL6R (ENSLLEG00000021954) #17	AQP10 (ENSLLEG00000021832) #19	HAX1 (ENSLLEG00000021641) #20	C1orf43 (ENSLLEG00000021373) #22	UBAP2L (ENSLLEG00000020043) #21	ENSLLEG00000019108 #24	RPS27 (ENSLLEG00000018960) #26	ENSLLEG00000018917	RBM8A (ENSLLEG00000018635)	LIX1L (ENSLLEG00000018534)	PEX11B (ENSLLEG00000018435)	ENSLLEG00000018311	ENSLLEG00000018238	ENSLLEG00000018215	ENSLLEG00000018200	ITGA10 (ENSLLEG00000018033)	RNF115 (ENSLLEG00000017736)	POLR3C (ENSLLEG00000017574)	ENSLLEG00000017499
Coelacanth	MODERN SPECIES	1495							SETDB1 (ENSLACG00000011159)	CERS2 (ENSLACG00000010852)	ENSLACG00000010189	MINDY1 (ENSLACG00000009951)	PRUNE1 (ENSLACG00000009440)	bnipl (ENSLACG00000009059)	ADAMTSL4 (ENSLACG00000008278)	ENSLACG00000007145	UBAP2L (ENSLACG00000003117) #21	C1orf43 (ENSLACG00000002718) #22	ENSLACG00000002090
Actinopterygii	ANCESTRAL SPECIES	514													ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00950000183065.B	ENSGT00940000154489.B
Neopterygii	ANCESTRAL SPECIES	363											ENSGT00940000165692	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00940000156178.B	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00950000183065.B	ENSGT00940000154489.B
Osteoglossocephalai	ANCESTRAL SPECIES	38																ENSGT00510000047366 #22	ENSGT00950000183065.B	ENSGT00940000154489.B.b	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00940000171931	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Clupeocephala	ANCESTRAL SPECIES	127	ENSGT00940000158881	ENSGT00940000157220.a	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000156178.B	ENSGT00940000164368.A	ENSGT00940000164368.B	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000162698	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000171931	ENSGT00940000154172.b	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00950000182891.b.b.b.a ##26
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	59	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00990000206813	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00940000171931	ENSGT00940000154172.b	ENSGT00940000166466.f	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00990000204073	ENSGT00940000160040.A
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00390000000521	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00940000171931	ENSGT00940000154172.b.a	ENSGT00940000166466.f	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b.q #7	ENSGT00390000007266	ENSGT00990000204073	ENSGT00940000160040.A	ENSGT00940000162071
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00510000047366.a.a #22
Huchen	MODERN SPECIES	3106													ENSHHUG00000028199	aqp10a (ENSHHUG00000028217)	ENSHHUG00000028224	C1orf43 (ENSHHUG00000028235) #22	tuft1a (ENSHHUG00000028247)	ENSHHUG00000028262	ENSHHUG00000028277 #16
Salmoninae_a	ANCESTRAL SPECIES	595																ENSGT00510000047366.a.a #22	ENSGT00950000183065.B.e.a
Oncorhynchus	ANCESTRAL SPECIES	488															ENSGT00940000156178.B.j	ENSGT00510000047366.a.a #22
Rainbow trout	MODERN SPECIES	11	nbn (ENSOMYG00000001649)	zgc:174935 (ENSOMYG00000001671)	si:dkey-87o1.2 (ENSOMYG00000076261)	them4 (ENSOMYG00000001725)	ENSOMYG00000001763	ENSOMYG00000001798	PIP5K1A (ENSOMYG00000001928)	psmd4b (ENSOMYG00000002085)	znf687a (ENSOMYG00000002126)	ENSOMYG00000002132	ENSOMYG00000048153	ENSOMYG00000002231	ENSOMYG00000061280	aqp10a (ENSOMYG00000002464)	ENSOMYG00000053336	ENSOMYG00000002403 #22	tuft1a (ENSOMYG00000002578)	ENSOMYG00000002631	ENSOMYG00000002644 #16	ENSOMYG00000002649 #13	ENSOMYG00000061554	s100t (ENSOMYG00000070358)	ENSOMYG00000060897	ENSOMYG00000002662	ENSOMYG00000053338	ENSOMYG00000073953	ENSOMYG00000048217	ENSOMYG00000074205	lenep (ENSOMYG00000054102)	ENSOMYG00000002895 #7	flad1 (ENSOMYG00000003129)
Oncorhynchus_a	ANCESTRAL SPECIES	635															ENSGT00940000156178.B.j	ENSGT00510000047366.a.a #22
Chinook salmon	MODERN SPECIES	852														aqp10a (ENSOTSG00005020567)	ENSOTSG00005020569	ENSOTSG00005020571 #22
Salmo	ANCESTRAL SPECIES	128			ENSGT00390000006215.a.c.a	ENSGT00940000154703.j.c	ENSGT00530000064050.b.f	ENSGT00940000156524.b.e	ENSGT00950000182957.a.b.t.a	ENSGT00940000165521.b.l	ENSGT00940000165692.b.b	ENSGT00940000164368.B.i.b	ENSGT01060000249872.a	ENSGT00940000164368.B.i.a	ENSGT00940000156178.B	ENSGT00510000047366.a.b #22	ENSGT00950000183065.B.e.a	ENSGT00510000047366.a.a #22	ENSGT00950000183065.B.e.b.b	ENSGT00940000154489.B.b	ENSGT00940000159107.j.d #16	ENSGT00940000158417.b.h #13	ENSGT00940000165956.f	ENSGT00940000171931.d.b	ENSGT00940000154172.b.a	ENSGT00730000111747.a.d	ENSGT00390000002996	ENSGT00950000182870.a.a.b.q.a.a #7	ENSGT00390000007266.p	ENSGT00990000204073.c.b.a.a	ENSGT00990000204073.c.a.a	ENSGT00990000204073.c.b.a.b	ENSGT00940000160040.A.c
River trout	MODERN SPECIES	30	them4 (ENSSTUG00000047216)	ENSSTUG00000047227	ENSSTUG00000047251	ENSSTUG00000047254	ENSSTUG00000047257	ENSSTUG00000047261	pip5k1ab (ENSSTUG00000047274)	psmd4b (ENSSTUG00000047294)	znf687a (ENSSTUG00000047399)	ENSSTUG00000047401	ENSSTUG00000047409	ENSSTUG00000047457	ENSSTUG00000047776	aqp10a (ENSSTUG00000047784)	ENSSTUG00000047785	C1orf43 (ENSSTUG00000047794) #22	tuft1a (ENSSTUG00000047801)	ENSSTUG00000047817	ENSSTUG00000047828 #16	ENSSTUG00000047834	s100a11 (ENSSTUG00000047843)	pbxip1b (ENSSTUG00000047849)	lenep (ENSSTUG00000047861)	SHC1 (ENSSTUG00000047878) #7	flad1 (ENSSTUG00000048012)	ENSSTUG00000048065	ENSSTUG00000048068	ENSSTUG00000048071	adar (ENSSTUG00000048095) #12	ENSSTUG00000048222	ENSSTUG00000048226 #11
Salmoninae	ANCESTRAL SPECIES	140	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484.d.a	ENSGT00390000006215.a.d	ENSGT00940000167484.c	ENSGT00390000006215.a.c	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000165521.b	ENSGT00940000165692.b.b	ENSGT00940000164368.B.i.b	ENSGT00940000164368.B.i.a	ENSGT00940000156178.B	ENSGT00510000047366.a.b #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b.h #13	ENSGT00940000165956.f	ENSGT00940000171931.d.b	ENSGT00940000166466.f.f	ENSGT00730000111747.a.c	ENSGT00390000002996	ENSGT00950000182870.a.a.b.q.b #7	ENSGT00950000182870.a.a.b.q.a.a #7	ENSGT00390000007266	ENSGT00990000204073.c	ENSGT00940000162071	ENSGT00990000204073.d
Salmoninae_a	ANCESTRAL SPECIES	63	ENSGT00990000212773	ENSGT00940000160047.f	ENSGT00940000167484.d.a	ENSGT00390000006215.a.d	ENSGT00940000167484.c	ENSGT00390000006215.a.c	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b.t	ENSGT00940000165521.b	ENSGT00940000165692.b.b	ENSGT00940000164368.B.i.b	ENSGT00940000164368.B.i.a	ENSGT00940000156178.B	ENSGT00510000047366.a.b #22	ENSGT00950000183065.B.e.b.b	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b.g.a #13	ENSGT00940000165956.e.a	ENSGT00940000171931.d.a	ENSGT00940000154172.b.a	ENSGT00730000111747.a.d	ENSGT01060000253325	ENSGT00940000158417.b.h #13	ENSGT00940000165956.f	ENSGT00940000171931.d.b	ENSGT00940000166466.f.f	ENSGT00730000111747.a.c	ENSGT00390000002996
Salmo	ANCESTRAL SPECIES	128					ENSGT00390000006215.a.c.a	ENSGT00940000154703.j.c	ENSGT00530000064050.b.f	ENSGT00940000156524.b.e	ENSGT00950000182957.a.b.t.a	ENSGT00940000165521.b.l	ENSGT00940000165692.b.b	ENSGT00940000164368.B.i.b	ENSGT01060000249872.a	ENSGT00940000164368.B.i.a	ENSGT00940000156178.B	ENSGT00510000047366.a.b #22	ENSGT00950000183065.B.e.a	ENSGT00510000047366.a.a #22	ENSGT00950000183065.B.e.b.b	ENSGT00940000154489.B.b	ENSGT00940000159107.j.d #16	ENSGT00940000158417.b.h #13	ENSGT00940000165956.f	ENSGT00940000171931.d.b	ENSGT00940000154172.b.a	ENSGT00730000111747.a.d	ENSGT00390000002996	ENSGT00950000182870.a.a.b.q.a.a #7	ENSGT00390000007266.p	ENSGT00990000204073.c.b.a.a	ENSGT00990000204073.c.a.a
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000051505	ENSSSAG00000051551	ecm1 (ENSSSAG00000051573)	PIP5K1A (ENSSSAG00000051625)	psmd4b (ENSSSAG00000046871)	znf687a (ENSSSAG00000096060)	ENSSSAG00000052324	ENSSSAG00000088081	ENSSSAG00000090159	il6ra (ENSSSAG00000052467)	ENSSSAG00000090870	ENSSSAG00000112331	ENSSSAG00000100647	aqp10a (ENSSSAG00000102365)	ENSSSAG00000113158	ENSSSAG00000102887 #22	tuft1a (ENSSSAG00000082528)	ENSSSAG00000094737	ENSSSAG00000053068	ENSSSAG00000088357 #16	ENSSSAG00000035346 #13	s100t (ENSSSAG00000065493)	s10ag (ENSSSAG00000046586)	ENSSSAG00000036475	pbxip1b (ENSSSAG00000119132)	ENSSSAG00000120962 #7	flad1 (ENSSSAG00000037910)	ENSSSAG00000105338	ENSSSAG00000101133	ENSSSAG00000117063	ENSSSAG00000116364
Atlantic salmon	MODERN SPECIES	24	si:dkey-87o1.2 (ENSSSAG00000055063)	ENSSSAG00000055073	them4 (ENSSSAG00000117909)	ENSSSAG00000117572	ENSSSAG00000038086	ENSSSAG00000087631	PIP5K1A (ENSSSAG00000105150)	psmd4b (ENSSSAG00000038894)	znf687a (ENSSSAG00000121364)	ENSSSAG00000087134	il6ra (ENSSSAG00000062093)	ENSSSAG00000052698	ENSSSAG00000042214	aqp10a (ENSSSAG00000042134)	ENSSSAG00000092174	ENSSSAG00000093232 #22	ENSSSAG00000115802	ENSSSAG00000091589	tuft1a (ENSSSAG00000086883)	ENSSSAG00000108867	ENSSSAG00000095236 #16	ENSSSAG00000101937	ENSSSAG00000115823 #13	s100t (ENSSSAG00000035898)	ENSSSAG00000092462	ENSSSAG00000042328	pbxip1b (ENSSSAG00000121291)	ENSSSAG00000108497 #7	flad1 (ENSSSAG00000051001)	ENSSSAG00000082236	ENSSSAG00000119593
River trout	MODERN SPECIES	22	ENSSTUG00000030463	zgc:174935 (ENSSTUG00000030458)	si:dkey-87o1.2 (ENSSTUG00000030453)	them4 (ENSSTUG00000030448)	ENSSTUG00000030412	ENSSTUG00000030396	pip5k1ab (ENSSTUG00000030359)	psmd4b (ENSSTUG00000029793)	znf687a (ENSSTUG00000029760)	ENSSTUG00000029723	ENSSTUG00000029697	ENSSTUG00000029690	aqp10a (ENSSTUG00000029620)	ENSSTUG00000029606	ENSSTUG00000029601	C1orf43 (ENSSTUG00000029584) #22	tuft1a (ENSSTUG00000029570)	ENSSTUG00000029541	ENSSTUG00000029525 #16	ENSSTUG00000029509	s100a11 (ENSSTUG00000029505)	ENSSTUG00000029468	ENSSTUG00000029448	lenep (ENSSTUG00000029443)	SHC1 (ENSSTUG00000029117) #7	flad1 (ENSSTUG00000029011)	ENSSTUG00000028999	ENSSTUG00000028529	ENSSTUG00000028516	ENSSTUG00000027938	ahr1a (ENSSTUG00000027876)
Oncorhynchus	ANCESTRAL SPECIES	116								ENSGT00940000156524.b.g	ENSGT00950000182957.a.b.t	ENSGT00940000165521.b.n	ENSGT00950000182957.a.b.s.b	ENSGT00940000165521.b.m.a	ENSGT00940000165692.b.a.a	ENSGT00940000164368.B.j	ENSGT00940000156178.B.i.a	ENSGT00510000047366.a.b #22	ENSGT00950000183065.B.e.a	ENSGT00940000154489.B.b.j	ENSGT00940000159107.j.f #16	ENSGT00940000166466.f.e	ENSGT00730000111747.a.c.d	ENSGT00390000002996.e	ENSGT00950000182870.a.a.b.q.b #7	ENSGT00390000007266.m	ENSGT00990000204073.c.b.b	ENSGT00990000204073.d	ENSGT00940000160040.A.d
Oncorhynchus_a	ANCESTRAL SPECIES	250											ENSGT00950000182957.a.b.s.b	ENSGT00940000165521.b.m.a	ENSGT00940000165692.b.a.a	ENSGT00940000164368.B.j	ENSGT00940000156178.B.i.a	ENSGT00510000047366.a.b #22	ENSGT00950000183065.B.e.a	ENSGT00940000154489.B.b.j	ENSGT00940000159107.j.f #16
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	4	ENSOKIG00005013167	zgc:174935 (ENSOKIG00005013153)	si:dkey-87o1.2 (ENSOKIG00005013147)	ENSOKIG00005013138	them4 (ENSOKIG00005013119)	ENSOKIG00005013093	ENSOKIG00005013063	pip5k1ab (ENSOKIG00005012970)	psmd4b (ENSOKIG00005012883)	znf687a (ENSOKIG00005012846)	ENSOKIG00005012809	ENSOKIG00005012782	ENSOKIG00005011260	aqp10a (ENSOKIG00005011184)	ENSOKIG00005011172	C1orf43 (ENSOKIG00005011001) #22	tuft1a (ENSOKIG00005010976)	ENSOKIG00005010954	ENSOKIG00005044228 #16	ENSOKIG00005044220	CHRNB2 (ENSOKIG00005044209) #13	s100t (ENSOKIG00005044190)	ENSOKIG00005044183	ENSOKIG00005044170	pbxip1b (ENSOKIG00005044152)	lenep (ENSOKIG00005044137)	SHC1 (ENSOKIG00005043874) #7	flad1 (ENSOKIG00005043618)	ENSOKIG00005043583	ENSOKIG00005043577	ENSOKIG00005043546
Coho salmon	MODERN SPECIES	11	nbn (ENSOKIG00005012219)	zgc:174935 (ENSOKIG00005012236)	si:dkey-87o1.2 (ENSOKIG00005012244)	them4 (ENSOKIG00005012260)	ENSOKIG00005012285	ENSOKIG00005012324	ENSOKIG00005012348	PIP5K1A (ENSOKIG00005012366)	psmd4b (ENSOKIG00005012420)	znf687a (ENSOKIG00005012511)	ENSOKIG00005012535	ENSOKIG00005012605	aqp10a (ENSOKIG00005012654)	ENSOKIG00005012704	ENSOKIG00005012711	C1orf43 (ENSOKIG00005012723) #22	ENSOKIG00005012761	SHE (ENSOKIG00005012811) #16	CHRNB2 (ENSOKIG00005012820) #13	s100t (ENSOKIG00005012828)	ENSOKIG00005012839	ENSOKIG00005012855	ENSOKIG00005012871	pbxip1b (ENSOKIG00005012897)	SHC1 (ENSOKIG00005012926) #7	flad1 (ENSOKIG00005013111)	ENSOKIG00005013279	ENSOKIG00005000052	ENSOKIG00005000067	ENSOKIG00005000088	SLC50A1 (ENSOKIG00005000105)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000031956	ENSOMYG00000032105	ENSOMYG00000032120	zgc:174935 (ENSOMYG00000055812)	si:dkey-87o1.2 (ENSOMYG00000001698)	ENSOMYG00000051517	them4 (ENSOMYG00000032138)	rorc-like (ENSOMYG00000032146)	ENSOMYG00000032162	PIP5K1A (ENSOMYG00000032256)	psmd4b (ENSOMYG00000032932)	znf687a (ENSOMYG00000032998)	ENSOMYG00000000158	ENSOMYG00000000170	ENSOMYG00000002492	ENSOMYG00000054166 #22	tuft1a (ENSOMYG00000076838)	ENSOMYG00000061106	ENSOMYG00000000590 #16	ENSOMYG00000000193 #13	s100t (ENSOMYG00000000202)	ENSOMYG00000000216	ENSOMYG00000000246	ENSOMYG00000000299	pbxip1b (ENSOMYG00000000320)	ENSOMYG00000062803	lenep (ENSOMYG00000000340)	ENSOMYG00000074708 #7	flad1 (ENSOMYG00000000407)	ENSOMYG00000069587	ENSOMYG00000000419
Huchen	MODERN SPECIES	3832																C1orf43 (ENSHHUG00000037657) #22	tuft1a (ENSHHUG00000037643)	ENSHHUG00000037624	ENSHHUG00000037613 #16
Northern pike	MODERN SPECIES	19	nbn (ENSELUG00000010759)	ENSELUG00000010790	si:dkey-87o1.2 (ENSELUG00000010813)	zgc:174935 (ENSELUG00000030132)	ENSELUG00000010834	them4 (ENSELUG00000010878)	ENSELUG00000010918	ENSELUG00000010946	pip5k1ab (ENSELUG00000011001)	psmd4b (ENSELUG00000011072)	znf687a (ENSELUG00000011099)	ENSELUG00000011156	ENSELUG00000011191	aqp10a (ENSELUG00000011238)	ENSELUG00000011261	C1orf43 (ENSELUG00000011307) #22	tuft1a (ENSELUG00000011356)	ENSELUG00000011427	SHE (ENSELUG00000011470) #16	CHRNB2 (ENSELUG00000011489) #13	s100t (ENSELUG00000033736)	ENSELUG00000011541	ENSELUG00000011590	pbxip1b (ENSELUG00000011642)	lenep (ENSELUG00000011655)	SHC1 (ENSELUG00000011764) #7	ENSELUG00000011665	flad1 (ENSELUG00000011807)	ENSELUG00000011828	ENSELUG00000032968	efna1b (ENSELUG00000011870)
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00940000171931	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00940000171931	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Tiger tail seahorse	MODERN SPECIES	276														aqp10a (ENSHCOG00000008332)	ENSHCOG00000008315	ENSHCOG00000008306 #22	tuft1a (ENSHCOG00000008262)	ENSHCOG00000008253	SHE (ENSHCOG00000008223) #16	CHRNB2 (ENSHCOG00000008218) #13	s100t (ENSHCOG00000008202)	ENSHCOG00000000268	pbxip1b (ENSHCOG00000008188)	lenep (ENSHCOG00000008179)	SHC1 (ENSHCOG00000008148) #7	flad1 (ENSHCOG00000008077)	ENSHCOG00000008046	efna3b (ENSHCOG00000008032)	efna1b (ENSHCOG00000008012)	slc50a1 (ENSHCOG00000007993)	TRIM46 (ENSHCOG00000007965)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00990000204777	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000162071	ENSGT00940000161355
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Eastern happy	MODERN SPECIES	2	ENSACLG00000017607	zgc:174935 (ENSACLG00000017623)	si:dkey-87o1.2 (ENSACLG00000017629)	them4 (ENSACLG00000017639)	ENSACLG00000017667	ENSACLG00000017718	pip5k1ab (ENSACLG00000017787)	psmd4b (ENSACLG00000017855)	znf687a (ENSACLG00000017906)	ENSACLG00000017945	ENSACLG00000018058	ENSACLG00000018088	ENSACLG00000018140	aqp10a (ENSACLG00000018480)	ENSACLG00000018509	C1orf43 (ENSACLG00000018518) #22	tuft1a (ENSACLG00000018541)	ENSACLG00000018588	SHE (ENSACLG00000018722) #16	CHRNB2 (ENSACLG00000018743) #13	s100t (ENSACLG00000018769)	ENSACLG00000018777	ENSACLG00000018789	SHC1 (ENSACLG00000018824) #7	flad1 (ENSACLG00000018866)	ENSACLG00000018915	efna3b (ENSACLG00000018981)	efna1b (ENSACLG00000018993)	slc50a1 (ENSACLG00000019004)	TRIM46 (ENSACLG00000019019)	tmem107 (ENSACLG00000019092)
Zebra mbuna	MODERN SPECIES	4	ENSMZEG00005022445	zgc:174935 (ENSMZEG00005022441)	si:dkey-87o1.2 (ENSMZEG00005022440)	them4 (ENSMZEG00005022438)	ENSMZEG00005022435	ENSMZEG00005022430	pip5k1ab (ENSMZEG00005022427)	psmd4b (ENSMZEG00005022425)	znf687a (ENSMZEG00005022424)	ENSMZEG00005022423	ENSMZEG00005022422	ENSMZEG00005022421	ENSMZEG00005022415	aqp10a (ENSMZEG00005022412)	ENSMZEG00005022409	C1orf43 (ENSMZEG00005022406) #22	tuft1a (ENSMZEG00005022404)	ENSMZEG00005022402	SHE (ENSMZEG00005022400) #16	CHRNB2 (ENSMZEG00005022397) #13	s100t (ENSMZEG00005022395)	ENSMZEG00005022392	ENSMZEG00005022390	SHC1 (ENSMZEG00005022385) #7	flad1 (ENSMZEG00005022381)	ENSMZEG00005022376
P. nyererei	MODERN SPECIES	340	OSGIN2 (ENSPNYG00000005965)	nbn (ENSPNYG00000005937)	zgc:174935 (ENSPNYG00000005922)	si:dkey-87o1.2 (ENSPNYG00000005912)	them4 (ENSPNYG00000005881)	ENSPNYG00000005844	ENSPNYG00000005784	pip5k1ab (ENSPNYG00000005720)	psmd4b (ENSPNYG00000005677)	ZNF687 (ENSPNYG00000005665)	ENSPNYG00000005646	ENSPNYG00000005626	ENSPNYG00000005550	aqp10a (ENSPNYG00000005533)	ENSPNYG00000005511	C1orf43 (ENSPNYG00000005488) #22	tuft1a (ENSPNYG00000005458)	ENSPNYG00000005439	SHE (ENSPNYG00000005425) #16	CHRNB2 (ENSPNYG00000005397) #13	s100t (ENSPNYG00000005385)	ENSPNYG00000005371	ENSPNYG00000005346	lenep (ENSPNYG00000005331)	SHC1 (ENSPNYG00000005290) #7	flad1 (ENSPNYG00000005240)	ENSPNYG00000005218	efna3b (ENSPNYG00000005180)	efna1b (ENSPNYG00000005166)	slc50a1 (ENSPNYG00000005152)	TRIM46 (ENSPNYG00000005112)
Burton s mouthbrooder	MODERN SPECIES	466	nbn (ENSHBUG00000001019)	ENSHBUG00000004790	ENSHBUG00000004781	si:dkey-87o1.2 (ENSHBUG00000004761)	them4 (ENSHBUG00000004744)	ENSHBUG00000004733	ENSHBUG00000004707	pip5k1ab (ENSHBUG00000004688)	psmd4b (ENSHBUG00000004617)	znf687a (ENSHBUG00000004580)	ENSHBUG00000004571	ENSHBUG00000004557	ENSHBUG00000004510	aqp10a (ENSHBUG00000004345)	ENSHBUG00000004316	C1orf43 (ENSHBUG00000004304) #22	tuft1a (ENSHBUG00000004279)	ENSHBUG00000004266	SHE (ENSHBUG00000004246) #16	CHRNB2 (ENSHBUG00000004229) #13	s100t (ENSHBUG00000004201)	ENSHBUG00000004193	ENSHBUG00000004186	SHC1 (ENSHBUG00000004149) #7	flad1 (ENSHBUG00000004092)	ENSHBUG00000004061	efna3b (ENSHBUG00000004048)	efna1b (ENSHBUG00000001131)	slc50a1 (ENSHBUG00000004027)	TRIM46 (ENSHBUG00000000096)	tmem107 (ENSHBUG00000004006)
Lyretail cichlid	MODERN SPECIES	421	OSGIN2 (ENSNBRG00000006040)	nbn (ENSNBRG00000005955)	ENSNBRG00000005919	ENSNBRG00000005898	them4 (ENSNBRG00000005879)	ENSNBRG00000005866	ENSNBRG00000005859	pip5k1ab (ENSNBRG00000005819)	psmd4b (ENSNBRG00000005781)	znf687a (ENSNBRG00000005680)	ENSNBRG00000005657	ENSNBRG00000005599	ENSNBRG00000005473	aqp10a (ENSNBRG00000005446)	ENSNBRG00000005422	C1orf43 (ENSNBRG00000005400) #22	tuft1a (ENSNBRG00000005390)	ENSNBRG00000005332	SHE (ENSNBRG00000005320) #16	CHRNB2 (ENSNBRG00000005296) #13	s100t (ENSNBRG00000005286)	ENSNBRG00000005278	ENSNBRG00000005246	SHC1 (ENSNBRG00000005224) #7	flad1 (ENSNBRG00000005181)	ENSNBRG00000005154	efna3b (ENSNBRG00000005119)	efna1b (ENSNBRG00000005100)	slc50a1 (ENSNBRG00000005047)	TRIM46 (ENSNBRG00000005003)	tmem107 (ENSNBRG00000004974)
Nile tilapia	MODERN SPECIES	2	ENSONIG00000006215	zgc:174935 (ENSONIG00000029899)	si:dkey-87o1.2 (ENSONIG00000027694)	them4 (ENSONIG00000006218)	ENSONIG00000006222	ENSONIG00000006225	pip5k1ab (ENSONIG00000006226)	psmd4b (ENSONIG00000006232)	znf687a (ENSONIG00000006242)	ENSONIG00000006248	ENSONIG00000041322	ENSONIG00000033596	ENSONIG00000006250	aqp10a (ENSONIG00000006266)	ENSONIG00000040834	C1orf43 (ENSONIG00000006270) #22	tuft1 (ENSONIG00000006277)	SHE (ENSONIG00000032975) #16	CHRNB2 (ENSONIG00000006286) #13	s100t (ENSONIG00000006290)	ENSONIG00000041755	s100a11 (ENSONIG00000042286)	pbxip1b (ENSONIG00000032523)	lenep (ENSONIG00000029810)	SHC1 (ENSONIG00000006295) #7	flad1 (ENSONIG00000006301)	ENSONIG00000034907	efna3b (ENSONIG00000006304)	efna1b (ENSONIG00000034004)	slc50a1 (ENSONIG00000006310)	TRIM46 (ENSONIG00000006313)
Midas cichlid	MODERN SPECIES	303	ENSACIG00000011221	ENSACIG00000011212	ENSACIG00000011205	si:dkey-87o1.2 (ENSACIG00000011199)	them4 (ENSACIG00000011182)	ENSACIG00000011161	ENSACIG00000011142	pip5k1ab (ENSACIG00000011070)	psmd4b (ENSACIG00000011041)	znf687a (ENSACIG00000010954)	ENSACIG00000010935	ENSACIG00000010890	ENSACIG00000010822	aqp10a (ENSACIG00000010773)	ENSACIG00000010751	C1orf43 (ENSACIG00000010718) #22	tuft1a (ENSACIG00000010688)	ENSACIG00000010611	SHE (ENSACIG00000010597) #16	CHRNB2 (ENSACIG00000010578) #13	s100t (ENSACIG00000010560)	ENSACIG00000010551	ENSACIG00000010543	ENSACIG00000010533	lenep (ENSACIG00000010523)	SHC1 (ENSACIG00000010488) #7	flad1 (ENSACIG00000010446)	ENSACIG00000010432	efna3b (ENSACIG00000010406)	efna1b (ENSACIG00000010394)	slc50a1 (ENSACIG00000010359)
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Clown anemonefish	MODERN SPECIES	3486					ENSAOCG00000000543	ENSAOCG00000009015	pip5k1ab (ENSAOCG00000008993)	ENSAOCG00000008978	psmd4b (ENSAOCG00000000529)	znf687a (ENSAOCG00000008916)	ENSAOCG00000008897	ENSAOCG00000008884	ENSAOCG00000008850	aqp10a (ENSAOCG00000008773)	ENSAOCG00000008751	C1orf43 (ENSAOCG00000000508) #22
Orange clownfish	MODERN SPECIES	21	zgc:174935 (ENSAPEG00000002860)	si:dkey-87o1.2 (ENSAPEG00000002867)	them4 (ENSAPEG00000002875)	ENSAPEG00000002890	ENSAPEG00000002945	pip5k1ab (ENSAPEG00000002961)	ENSAPEG00000003022	psmd4b (ENSAPEG00000003043)	znf687a (ENSAPEG00000003100)	ENSAPEG00000003116	ENSAPEG00000003136	ENSAPEG00000003149	ENSAPEG00000003173	aqp10a (ENSAPEG00000003280)	ENSAPEG00000003355	C1orf43 (ENSAPEG00000003365) #22	tuft1a (ENSAPEG00000003370)	ENSAPEG00000003380	SHE (ENSAPEG00000003405) #16	CHRNB2 (ENSAPEG00000003466) #13	s100t (ENSAPEG00000003495)	ENSAPEG00000003505	s100a11 (ENSAPEG00000003521)	pbxip1b (ENSAPEG00000003593)	lenep (ENSAPEG00000003607)	SHC1 (ENSAPEG00000003622) #7	flad1 (ENSAPEG00000003678)	ENSAPEG00000003741	efna3b (ENSAPEG00000003781)	efna1b (ENSAPEG00000003805)	slc50a1 (ENSAPEG00000003836)
Spiny chromis	MODERN SPECIES	2414														aqp10a (ENSAPOG00000003275)	ENSAPOG00000003323	ENSAPOG00000003341 #22
Bicolor damselfish	MODERN SPECIES	753	ENSSPAG00000003291	ENSSPAG00000003278	ENSSPAG00000003238	ENSSPAG00000003205	ENSSPAG00000003177	pip5k1ab (ENSSPAG00000003070)	ENSSPAG00000003041	psmd4b (ENSSPAG00000003011)	ENSSPAG00000002977	ZNF687 (ENSSPAG00000002960)	ENSSPAG00000002937	ENSSPAG00000002913	ENSSPAG00000002857	aqp10a (ENSSPAG00000002825)	ENSSPAG00000002816	C1orf43 (ENSSPAG00000002780) #22
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a
Turquoise killifish	MODERN SPECIES	1614	OLA.22492 (ENSNFUG00015014884)	SGK2B (ENSNFUG00015014756)	PTPN3 (ENSNFUG00015014645)	ENSNFUG00015014578	esrp1 (ENSNFUG00015013634)	VIRMA (ENSNFUG00015013273)	RNF41L (ENSNFUG00015013257)	RAD54B (ENSNFUG00015013255)	GEM (ENSNFUG00015013113)	cdh17 (ENSNFUG00015013095)	PDP1 (ENSNFUG00015013080)	ENSNFUG00015013070	ENSNFUG00015012538	aqp10a (ENSNFUG00015012366)	IL16 (ENSNFUG00015012348)	ENSNFUG00015012342 #22	tuft1a (ENSNFUG00015012333)	ENSNFUG00015012317	SHE (ENSNFUG00015012311) #16	ENSNFUG00015012307	s100t (ENSNFUG00015012302)	ENSNFUG00015012300	CHRNB2B (ENSNFUG00015012274) #13	pbxip1b (ENSNFUG00015012239)	lenep (ENSNFUG00015012228)	SHC1 (ENSNFUG00015012176) #7	EIF3JB (ENSNFUG00015012142)	cilp (ENSNFUG00015012130)	SCRT1 (ENSNFUG00015012126)	INO80C (ENSNFUG00015012120)	GALNT1 (ENSNFUG00015011912)
Mangrove rivulus	MODERN SPECIES	81	nbn (ENSKMAG00000003366)	ENSKMAG00000003355	zgc:174935 (ENSKMAG00000003346)	si:dkey-87o1.2 (ENSKMAG00000003334)	them4 (ENSKMAG00000003312)	ENSKMAG00000003272	ENSKMAG00000003242	pip5k1ab (ENSKMAG00000003193)	psmd4b (ENSKMAG00000003147)	znf687a (ENSKMAG00000003107)	ENSKMAG00000003075	ENSKMAG00000003045	ENSKMAG00000002933	aqp10a (ENSKMAG00000002870)	ENSKMAG00000002859	C1orf43 (ENSKMAG00000002844) #22	tuft1a (ENSKMAG00000002782)	ENSKMAG00000002734	SHE (ENSKMAG00000002704) #16	CHRNB2 (ENSKMAG00000002690) #13	s100t (ENSKMAG00000002670)	ENSKMAG00000002661	ENSKMAG00000002637	pbxip1b (ENSKMAG00000002607)	lenep (ENSKMAG00000002589)	SHC1 (ENSKMAG00000002555) #7	flad1 (ENSKMAG00000002521)	ENSKMAG00000002504	efna3b (ENSKMAG00000002488)	efna1b (ENSKMAG00000002482)	slc50a1 (ENSKMAG00000002469)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B.c	ENSGT00940000164368.B.d	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Poeciliinae	ANCESTRAL SPECIES		ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B.c	ENSGT00940000164368.B.d	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Poecilia	ANCESTRAL SPECIES		ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B.c	ENSGT00940000164368.B.d	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01100000265170	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
NAME_6	ANCESTRAL SPECIES	36	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000182089	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B.c	ENSGT00940000164368.B.d	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01100000265170	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Amazon molly	MODERN SPECIES	328	OSGIN2 (ENSPFOG00000016003)	nbn (ENSPFOG00000015939)	ENSPFOG00000015925	ENSPFOG00000015880	ENSPFOG00000015876	pip5k1ab (ENSPFOG00000023667)	psmd4b (ENSPFOG00000023412)	znf687a (ENSPFOG00000015791)	ENSPFOG00000015764	ENSPFOG00000015758	ENSPFOG00000015757	ENSPFOG00000015524	aqp10a (ENSPFOG00000023904)	aqp10a (ENSPFOG00000015450)	ENSPFOG00000024372	C1orf43 (ENSPFOG00000015420) #22	tuft1a (ENSPFOG00000015374)	ENSPFOG00000015274	SHE (ENSPFOG00000015248) #16	CHRNB2 (ENSPFOG00000015219) #13	s100t (ENSPFOG00000015212)	pbxip1b (ENSPFOG00000015187)	SHC1 (ENSPFOG00000015065) #7	flad1 (ENSPFOG00000014978)	ENSPFOG00000023395	efna3b (ENSPFOG00000014962)	efna1b (ENSPFOG00000022557)	slc50a1 (ENSPFOG00000014921)	TRIM46 (ENSPFOG00000014860)	ENSPFOG00000014851	krtcap2 (ENSPFOG00000014849)
Sailfin molly	MODERN SPECIES	1857								ENSPLAG00000001448	ENSPLAG00000001452	ENSPLAG00000001456	ENSPLAG00000001463	ENSPLAG00000001465	aqp10a (ENSPLAG00000001469)	aqp10a (ENSPLAG00000001475)	ENSPLAG00000001480	C1orf43 (ENSPLAG00000001484) #22	tuft1a (ENSPLAG00000001488)
Guppy	MODERN SPECIES	446	ENSPREG00000016465	ENSPREG00000016487	si:dkey-87o1.2 (ENSPREG00000016499)	them4 (ENSPREG00000016511)	ENSPREG00000016519	ENSPREG00000016548	pip5k1ab (ENSPREG00000016572)	psmd4b (ENSPREG00000016628)	znf687a (ENSPREG00000016654)	ENSPREG00000016675	ENSPREG00000016686	ENSPREG00000016733	aqp10a (ENSPREG00000016859)	aqp10a (ENSPREG00000016869)	ENSPREG00000016882	C1orf43 (ENSPREG00000016893) #22	tuft1a (ENSPREG00000016908)	ENSPREG00000016930	SHE (ENSPREG00000016960) #16	CHRNB2 (ENSPREG00000016997) #13	s100t (ENSPREG00000017006)	ENSPREG00000017012	s100a11 (ENSPREG00000017025)	pbxip1b (ENSPREG00000017053)	lenep (ENSPREG00000017078)	SHC1 (ENSPREG00000017101) #7	flad1 (ENSPREG00000017162)	ENSPREG00000017201	efna3b (ENSPREG00000017222)	efna1b (ENSPREG00000017235)	slc50a1 (ENSPREG00000017252)
Platyfish	MODERN SPECIES	17	ENSXMAG00000025183	si:dkey-87o1.2 (ENSXMAG00000028452)	them4 (ENSXMAG00000006994)	ENSXMAG00000006999	ENSXMAG00000007019	pip5k1ab (ENSXMAG00000007023)	psmd4b (ENSXMAG00000007039)	znf687a (ENSXMAG00000028501)	ENSXMAG00000007068	ENSXMAG00000025495	ENSXMAG00000007071	ENSXMAG00000007074	aqp10a (ENSXMAG00000007140)	aqp10a (ENSXMAG00000007165)	ENSXMAG00000021102	C1orf43 (ENSXMAG00000007171) #22	tuft1a (ENSXMAG00000007182)	ENSXMAG00000007198	SHE (ENSXMAG00000007217) #16	CHRNB2 (ENSXMAG00000029993) #13	s100t (ENSXMAG00000007227)	ENSXMAG00000007230	ENSXMAG00000007231	lenep (ENSXMAG00000027904)	SHC1 (ENSXMAG00000027995) #7	flad1 (ENSXMAG00000007249)	ENSXMAG00000021168	efna3b (ENSXMAG00000029533)	efna1b (ENSXMAG00000007271)	slc50a1 (ENSXMAG00000007275)	TRIM46 (ENSXMAG00000007279)
NAME_4	ANCESTRAL SPECIES	1	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B.c	ENSGT00940000164368.B.d	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Mummichog	MODERN SPECIES	2225	si:dkey-87o1.2 (ENSFHEG00000018512)	them4 (ENSFHEG00000018518)	ENSFHEG00000018642	ENSFHEG00000018657	pip5k1ab (ENSFHEG00000018677)	psmd4b (ENSFHEG00000018708)	znf687a (ENSFHEG00000019015)	ENSFHEG00000019044	ENSFHEG00000019052	ENSFHEG00000019129	ENSFHEG00000000494	ENSFHEG00000019329	aqp10a (ENSFHEG00000019420)	aqp10a (ENSFHEG00000020370)	ENSFHEG00000020395	C1orf43 (ENSFHEG00000000510) #22	tuft1a (ENSFHEG00000020428)	ENSFHEG00000020442	SHE (ENSFHEG00000020485) #16	CHRNB2 (ENSFHEG00000020499) #13	s100t (ENSFHEG00000020504)	ENSFHEG00000000602	s100a11 (ENSFHEG00000020526)	ENSFHEG00000020536	ENSFHEG00000020545	pbxip1b (ENSFHEG00000020553)	lenep (ENSFHEG00000020570)	SHC1 (ENSFHEG00000020675) #7	flad1 (ENSFHEG00000020718)	ENSFHEG00000020730	efna3b (ENSFHEG00000020737)
Sheepshead minnow	MODERN SPECIES	329											ENSCVAG00000005182	ENSCVAG00000005163	aqp10a (ENSCVAG00000005080)	aqp10a (ENSCVAG00000005050)	ENSCVAG00000005029	C1orf43 (ENSCVAG00000005010) #22	tuft1a (ENSCVAG00000004998)	ENSCVAG00000023329	SHE (ENSCVAG00000023317) #16	CHRNB2 (ENSCVAG00000023298) #13	s100t (ENSCVAG00000023254)	ENSCVAG00000023247	s100a11 (ENSCVAG00000023237)	pbxip1b (ENSCVAG00000023220)	lenep (ENSCVAG00000023213)	SHC1 (ENSCVAG00000023208) #7	flad1 (ENSCVAG00000023182)	ENSCVAG00000023120	ENSCVAG00000023112	efna1b (ENSCVAG00000023094)	slc50a1 (ENSCVAG00000023092)
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a.a	ENSGT00390000007801
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a.a	ENSGT00390000007801
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000014042	ENSOJAG00000014049	si:dkey-87o1.2 (ENSOJAG00000014055)	them4 (ENSOJAG00000014077)	ENSOJAG00000014087	ENSOJAG00000014104	pip5k1ab (ENSOJAG00000014195)	psmd4b (ENSOJAG00000015047)	znf687a (ENSOJAG00000015161)	ENSOJAG00000015305	ENSOJAG00000015320	ENSOJAG00000015331	ENSOJAG00000015384	aqp10a (ENSOJAG00000017401)	ENSOJAG00000017409	C1orf43 (ENSOJAG00000017415) #22	tuft1a (ENSOJAG00000017422)	ENSOJAG00000017433	SHE (ENSOJAG00000017477) #16	CHRNB2 (ENSOJAG00000017483) #13	s100t (ENSOJAG00000017487)	ENSOJAG00000017498	s100a11 (ENSOJAG00000017506)	ENSOJAG00000017518	lenep (ENSOJAG00000017545)	SHC1 (ENSOJAG00000017554) #7	flad1 (ENSOJAG00000017597)	ENSOJAG00000017614	efna3b (ENSOJAG00000017624)	efna1b (ENSOJAG00000017628)	slc50a1 (ENSOJAG00000017644)
Indian medaka	MODERN SPECIES	5	nbn (ENSOMEG00000006065)	ENSOMEG00000006073	ENSOMEG00000000875	si:dkey-87o1.2 (ENSOMEG00000006101)	them4 (ENSOMEG00000006120)	ENSOMEG00000006159	ENSOMEG00000006195	pip5k1ab (ENSOMEG00000006274)	psmd4b (ENSOMEG00000006340)	znf687a (ENSOMEG00000006384)	ENSOMEG00000006440	ENSOMEG00000006484	ENSOMEG00000006652	aqp10a (ENSOMEG00000006694)	ENSOMEG00000006726	C1orf43 (ENSOMEG00000006745) #22	tuft1a (ENSOMEG00000006784)	ENSOMEG00000006860	SHE (ENSOMEG00000006894) #16	CHRNB2 (ENSOMEG00000006932) #13	s100t (ENSOMEG00000006947)	ENSOMEG00000006969	s100a11 (ENSOMEG00000006979)	pbxip1b (ENSOMEG00000007035)	SHC1 (ENSOMEG00000007138) #7	flad1 (ENSOMEG00000007191)	ENSOMEG00000007209	efna3b (ENSOMEG00000007246)	efna1b (ENSOMEG00000007282)	slc50a1 (ENSOMEG00000007302)	TRIM46 (ENSOMEG00000000180)
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a.a	ENSGT00390000007801	ENSGT00940000158021.d
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000027068	si:dkey-87o1.2 (ENSORLG00000009461)	ENSORLG00000023477	them4 (ENSORLG00000029589)	ENSORLG00000009486	ENSORLG00000009496	pip5k1ab (ENSORLG00000030427)	psmd4b (ENSORLG00000009532)	znf687a (ENSORLG00000009548)	ENSORLG00000027159	ENSORLG00000025215	ENSORLG00000028968	ENSORLG00000009604	aqp10a (ENSORLG00000009610)	ENSORLG00000027199	ENSORLG00000009633 #22	tuft1a (ENSORLG00000009652)	ENSORLG00000009675	SHE (ENSORLG00000024988) #16	CHRNB2 (ENSORLG00000009700) #13	s100t (ENSORLG00000009724)	ENSORLG00000025488	s100a11 (ENSORLG00000030520)	pbxip1b (ENSORLG00000030223)	SHC1 (ENSORLG00000009745) #7	ENSORLG00000030063	ENSORLG00000024740	ENSORLG00000009769	ENSORLG00000026016	ENSORLG00000024317	efna3b (ENSORLG00000028633)
Chinese medaka	MODERN SPECIES	467	gtpbp10 (ENSOSIG00000010749)	OSGIN2 (ENSOSIG00000010750)	ENSOSIG00000010755	them4 (ENSOSIG00000010756)	ENSOSIG00000010760	ENSOSIG00000010764	pip5k1ab (ENSOSIG00000010783)	psmd4b (ENSOSIG00000011829)	znf687a (ENSOSIG00000011923)	ENSOSIG00000011925	ENSOSIG00000011927	ENSOSIG00000011928	ENSOSIG00000011948	aqp10a (ENSOSIG00000013023)	ENSOSIG00000013024	C1orf43 (ENSOSIG00000013027) #22	tuft1a (ENSOSIG00000013029)	ENSOSIG00000013033	SHE (ENSOSIG00000013035) #16	CHRNB2 (ENSOSIG00000013037) #13	s100t (ENSOSIG00000013039)	ENSOSIG00000013040	ENSOSIG00000013042	ENSOSIG00000013043	ENSOSIG00000013046	SHC1 (ENSOSIG00000013048) #7	flad1 (ENSOSIG00000013050)	ENSOSIG00000013051	efna3b (ENSOSIG00000013052)	efna1b (ENSOSIG00000013053)	slc50a1 (ENSOSIG00000013054)
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00620000088774	ENSGT01010000230299	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000177151	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00990000204777	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d	ENSGT00390000014827
Climbing perch	MODERN SPECIES	7	nbn (ENSATEG00000000145)	ENSATEG00000000084	zgc:174935 (ENSATEG00000000056)	si:dkey-87o1.2 (ENSATEG00000023947)	them4 (ENSATEG00000023944)	ENSATEG00000023938	ENSATEG00000023928	PIP5K1A (ENSATEG00000023914)	psmd4b (ENSATEG00000023903)	znf687a (ENSATEG00000023874)	ENSATEG00000026102	ENSATEG00000023850	ENSATEG00000023828	aqp10a (ENSATEG00000023820)	ENSATEG00000023815	ENSATEG00000023802 #22	tuft1a (ENSATEG00000023795)	ENSATEG00000023787	ENSATEG00000023782 #16	ENSATEG00000023770 #13	s100t (ENSATEG00000028733)	ENSATEG00000023757	pbxip1b (ENSATEG00000023746)	lenep (ENSATEG00000028827)	ENSATEG00000026127 #7	flad1 (ENSATEG00000023732)	ENSATEG00000023728	ENSATEG00000023726	efna1b (ENSATEG00000023721)	slc50a1 (ENSATEG00000023716)	ENSATEG00000023712
Siamese fighting fish	MODERN SPECIES	7	OSGIN2 (ENSBSLG00000021253)	nbn (ENSBSLG00000021156)	ENSBSLG00000021099	ENSBSLG00000021030	ENSBSLG00000020998	them4 (ENSBSLG00000020955)	pip5k1ab (ENSBSLG00000020030)	psmd4b (ENSBSLG00000019880)	ZNF687 (ENSBSLG00000019973)	ENSBSLG00000019833	ENSBSLG00000019812	ENSBSLG00000019774	ENSBSLG00000017904	aqp10a (ENSBSLG00000017244)	ENSBSLG00000017211	C1orf43 (ENSBSLG00000017200) #22	tuft1a (ENSBSLG00000017133)	ENSBSLG00000017011	SHE (ENSBSLG00000016956) #16	CHRNB2 (ENSBSLG00000016930) #13	s100t (ENSBSLG00000016908)	ENSBSLG00000016897	ENSBSLG00000016711	lenep (ENSBSLG00000016578)	SHC1 (ENSBSLG00000015391) #7	flad1 (ENSBSLG00000015250)	ENSBSLG00000015221	ENSBSLG00000015196	efna1b (ENSBSLG00000015174)	slc50a1 (ENSBSLG00000015149)	TRIM46 (ENSBSLG00000014975)
Zig-zag eel	MODERN SPECIES	7	zgc:174935 (ENSMAMG00000024759)	si:dkey-87o1.2 (ENSMAMG00000027302)	them4 (ENSMAMG00000013276)	ENSMAMG00000013322	ENSMAMG00000013397	PIP5K1A (ENSMAMG00000013410)	psmd4b (ENSMAMG00000013459)	znf687a (ENSMAMG00000013508)	ENSMAMG00000026937	ENSMAMG00000025375	ENSMAMG00000013556	ENSMAMG00000008308	ENSMAMG00000013575	aqp10a (ENSMAMG00000013657)	ENSMAMG00000013686	ENSMAMG00000013746 #22	tuft1a (ENSMAMG00000025073)	ENSMAMG00000013757	ENSMAMG00000013801 #16	ENSMAMG00000013816 #13	s100t (ENSMAMG00000013861)	ENSMAMG00000013894	ENSMAMG00000013904	pbxip1b (ENSMAMG00000013936)	lenep (ENSMAMG00000027100)	ENSMAMG00000014026 #7	flad1 (ENSMAMG00000014067)	ENSMAMG00000014099	efna3b (ENSMAMG00000014122)	efna1b (ENSMAMG00000014132)	slc50a1 (ENSMAMG00000014164)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Seriola	ANCESTRAL SPECIES	28													ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Greater amberjack	MODERN SPECIES	88													ENSSDUG00000005174	aqp10a (ENSSDUG00000005240)	ENSSDUG00000005286	C1orf43 (ENSSDUG00000005312) #22	tuft1a (ENSSDUG00000005318)	ENSSDUG00000005342	SHE (ENSSDUG00000005385) #16	CHRNB2 (ENSSDUG00000005400) #13	s100t (ENSSDUG00000005412)	ENSSDUG00000005425	ENSSDUG00000005443	SHC1 (ENSSDUG00000005490) #7	flad1 (ENSSDUG00000005605)	ENSSDUG00000005650	efna3b (ENSSDUG00000005667)	efna1b (ENSSDUG00000005679)	slc50a1 (ENSSDUG00000005696)	TRIM46 (ENSSDUG00000005724)	TMEM107 (ENSSDUG00000005858)
Yellowtail amberjack	MODERN SPECIES	2802													ENSSLDG00000014889	aqp10a (ENSSLDG00000014846)	ENSSLDG00000014811	C1orf43 (ENSSLDG00000014787) #22	tuft1a (ENSSLDG00000014770)	ENSSLDG00000014750	SHE (ENSSLDG00000014731) #16	CHRNB2 (ENSSLDG00000014720) #13	s100t (ENSSLDG00000014708)	ENSSLDG00000014701	s100a11 (ENSSLDG00000014692)	pbxip1b (ENSSLDG00000014671)	SHC1 (ENSSLDG00000014623) #7	flad1 (ENSSLDG00000014561)	ENSSLDG00000014545	efna3b (ENSSLDG00000014530)	efna1b (ENSSLDG00000014522)	slc50a1 (ENSSLDG00000014498)	TRIM46 (ENSSLDG00000014453)
Barramundi perch	MODERN SPECIES	185										ENSLCAG00010025617	ENSLCAG00010025613	ENSLCAG00010025612	ENSLCAG00010025583	aqp10a (ENSLCAG00010025522)	ENSLCAG00010025520	C1orf43 (ENSLCAG00010025516) #22	tuft1a (ENSLCAG00010025513)	CGN (ENSLCAG00010025500)	SHE (ENSLCAG00010025488) #16	CHRNB2 (ENSLCAG00010025484) #13	s100t (ENSLCAG00010025480)	ENSLCAG00010025479	s100a11 (ENSLCAG00010025475)	pbxip1b (ENSLCAG00010025472)	SHC1 (ENSLCAG00010025450) #7	flad1 (ENSLCAG00010025436)	ENSLCAG00010025434	efna3b (ENSLCAG00010025431)	efna1b (ENSLCAG00010025430)	slc50a1 (ENSLCAG00010025427)	TRIM46 (ENSLCAG00010025407)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Turbot	MODERN SPECIES		zgc:174935 (ENSSMAG00000021970)	si:dkey-87o1.2 (ENSSMAG00000028381)	them4 (ENSSMAG00000017713)	ENSSMAG00000017620	ENSSMAG00000017560	PIP5K1A (ENSSMAG00000017483)	ENSSMAG00000017477	psmd4b (ENSSMAG00000017291)	znf687a (ENSSMAG00000017261)	ENSSMAG00000025843	ENSSMAG00000025046	ENSSMAG00000017234	ENSSMAG00000017186	aqp10a (ENSSMAG00000017161)	ENSSMAG00000017137	ENSSMAG00000017110 #22	tuft1a (ENSSMAG00000027625)	ENSSMAG00000016998	ENSSMAG00000030499 #16	ENSSMAG00000016956 #13	s100t (ENSSMAG00000034704)	ENSSMAG00000037684	ENSSMAG00000016935	pbxip1b (ENSSMAG00000016918)	lenep (ENSSMAG00000016910)	ENSSMAG00000016831 #7	flad1 (ENSSMAG00000016798)	ENSSMAG00000029159	efna3b (ENSSMAG00000029543)	efna1b (ENSSMAG00000016748)	slc50a1 (ENSSMAG00000016730)
Tongue sole	MODERN SPECIES	4	ENSCSEG00000001874	ENSCSEG00000001878	ENSCSEG00000001889	pip5k1ab (ENSCSEG00000001913)	ENSCSEG00000001929	ENSCSEG00000001939	ENSCSEG00000001947	ENSCSEG00000001950	psmd4b (ENSCSEG00000001952)	znf687a (ENSCSEG00000001965)	ENSCSEG00000001975	ENSCSEG00000002003	ENSCSEG00000002008	ENSCSEG00000002013	aqp10a (ENSCSEG00000002033)	C1orf43 (ENSCSEG00000002038) #22	ENSCSEG00000002053	tuft1a (ENSCSEG00000002057)	ENSCSEG00000002061	SHE (ENSCSEG00000002066) #16	CHRNB2 (ENSCSEG00000002067) #13	s100t (ENSCSEG00000002071)	ENSCSEG00000002074	s100a11 (ENSCSEG00000002078)	pbxip1b (ENSCSEG00000002079)	SHC1 (ENSCSEG00000002094) #7	ENSCSEG00000002129	ENSCSEG00000002135	ENSCSEG00000002137	ENSCSEG00000002140	efna3b (ENSCSEG00000002147)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00620000088774	ENSGT01010000230299	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00620000088774	ENSGT01010000230299	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Ballan wrasse	MODERN SPECIES	174	zgc:174935 (ENSLBEG00000006031)	si:dkey-87o1.2 (ENSLBEG00000006010)	them4 (ENSLBEG00000005992)	ENSLBEG00000005939	ENSLBEG00000005876	ENSLBEG00000005863	pip5k1ab (ENSLBEG00000005835)	psmd4b (ENSLBEG00000005775)	znf687a (ENSLBEG00000005738)	ENSLBEG00000005688	ENSLBEG00000005671	ENSLBEG00000005656	ENSLBEG00000005570	aqp10a (ENSLBEG00000005505)	ENSLBEG00000005465	C1orf43 (ENSLBEG00000005416) #22	tuft1a (ENSLBEG00000005392)	ENSLBEG00000005375	SHE (ENSLBEG00000005361) #16	CHRNB2 (ENSLBEG00000005352) #13	s100t (ENSLBEG00000005335)	ENSLBEG00000005321	s100a11 (ENSLBEG00000005309)	ENSLBEG00000005266	lenep (ENSLBEG00000005250)	SHC1 (ENSLBEG00000005176) #7	flad1 (ENSLBEG00000005108)	ENSLBEG00000005068	ENSLBEG00000005027	ENSLBEG00000005004	foxg1a (ENSLBEG00000004975)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
European seabass	MODERN SPECIES	6	gtpbp10 (ENSDLAG00005014063)	ENSDLAG00005032125	nbn (ENSDLAG00005014035)	ENSDLAG00005014030	si:dkey-87o1.2 (ENSDLAG00005031873)	zgc:174935 (ENSDLAG00005027220)	them4 (ENSDLAG00005013988)	ENSDLAG00005013897	ENSDLAG00005013890	PIP5K1A (ENSDLAG00005013768)	psmd4b (ENSDLAG00005013701)	znf687a (ENSDLAG00005013693)	ENSDLAG00005026684	ENSDLAG00005012816	ENSDLAG00005012540	ENSDLAG00005012533 #22	tuft1a (ENSDLAG00005012514)	ENSDLAG00005012474	ENSDLAG00005012461 #16	ENSDLAG00005012441 #13	s100t (ENSDLAG00005028111)	ENSDLAG00005012297	ENSDLAG00005029586	pbxip1b (ENSDLAG00005012389)	lenep (ENSDLAG00005031514)	flad1 (ENSDLAG00005012324)	ENSDLAG00005012366 #7	ENSDLAG00005012305	efna3b (ENSDLAG00005029933)	efna1b (ENSDLAG00005012283)	slc50a1 (ENSDLAG00005012267)
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005014194	zgc:174935 (ENSLCRG00005014192)	si:dkey-87o1.2 (ENSLCRG00005014189)	them4 (ENSLCRG00005014187)	ENSLCRG00005014171	ENSLCRG00005014168	pip5k1ab (ENSLCRG00005014153)	psmd4b (ENSLCRG00005014122)	znf687a (ENSLCRG00005014119)	ENSLCRG00005014117	ENSLCRG00005014115	ENSLCRG00005014113	ENSLCRG00005010031	aqp10a (ENSLCRG00005009990)	ENSLCRG00005009989	C1orf43 (ENSLCRG00005009988) #22	tuft1a (ENSLCRG00005009986)	ENSLCRG00005009981	SHE (ENSLCRG00005009979) #16	CHRNB2 (ENSLCRG00005009978) #13	s100t (ENSLCRG00005009977)	ENSLCRG00005009976	s100a11 (ENSLCRG00005009975)	pbxip1b (ENSLCRG00005009973)	lenep (ENSLCRG00005009971)	SHC1 (ENSLCRG00005009700) #7	flad1 (ENSLCRG00005009691)	ENSLCRG00005009688	efna3b (ENSLCRG00005009686)	efna1b (ENSLCRG00005009684)	slc50a1 (ENSLCRG00005009680)
Gilthead seabream	MODERN SPECIES	8	zgc:174935 (ENSSAUG00010018255)	si:dkey-87o1.2 (ENSSAUG00010018257)	them4 (ENSSAUG00010018258)	ENSSAUG00010018260	ENSSAUG00010018266	pip5k1ab (ENSSAUG00010018271)	ENSSAUG00010018501	PSMD4 (ENSSAUG00010018503)	znf687a (ENSSAUG00010018604)	ENSSAUG00010018606	ENSSAUG00010018608	ENSSAUG00010018609	ENSSAUG00010018632	aqp10a (ENSSAUG00010018987)	ENSSAUG00010019292	C1orf43 (ENSSAUG00010019293) #22	tuft1a (ENSSAUG00010019296)	ENSSAUG00010019298	SHE (ENSSAUG00010019306) #16	CHRNB2 (ENSSAUG00010019309) #13	s100t (ENSSAUG00010019311)	ENSSAUG00010019313	s100a11 (ENSSAUG00010019315)	pbxip1b (ENSSAUG00010019317)	lenep (ENSSAUG00010019319)	SHC1 (ENSSAUG00010014819) #7	flad1 (ENSSAUG00010014857)	ENSSAUG00010014863	efna3b (ENSSAUG00010014864)	efna1b (ENSSAUG00010014867)	slc50a1 (ENSSAUG00010014868)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00390000000521	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00940000172009	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Lumpfish	MODERN SPECIES	7	nbn (ENSCLMG00005011626)	ENSCLMG00005011627	ENSCLMG00005011628	ENSCLMG00005011629	them4 (ENSCLMG00005011630)	ENSCLMG00005011631	ENSCLMG00005011632	pip5k1ab (ENSCLMG00005011635)	psmd4b (ENSCLMG00005012156)	znf687a (ENSCLMG00005012157)	ENSCLMG00005012158	ENSCLMG00005012159	ENSCLMG00005012160	aqp10a (ENSCLMG00005012161)	ENSCLMG00005012258	C1orf43 (ENSCLMG00005012259) #22	tuft1a (ENSCLMG00005012260)	ENSCLMG00005012261	SHE (ENSCLMG00005012262) #16	CHRNB2 (ENSCLMG00005012263) #13	s100t (ENSCLMG00005012264)	ENSCLMG00005012265	s100a11 (ENSCLMG00005012266)	ENSCLMG00005012268	lenep (ENSCLMG00005012269)	SHC1 (ENSCLMG00005012280) #7	flad1 (ENSCLMG00005012661)	ENSCLMG00005012668	efna3b (ENSCLMG00005012671)	efna1b (ENSCLMG00005012672)	slc50a1 (ENSCLMG00005012673)
Stickleback	MODERN SPECIES	19	cldn12 (ENSGACG00000012308)	ADAM22 (ENSGACG00000012292)	gtpbp10 (ENSGACG00000012277)	OSGIN2 (ENSGACG00000012271)	nbn (ENSGACG00000012254)	ENSGACG00000012251	si:dkey-87o1.2 (ENSGACG00000012247)	them4 (ENSGACG00000012243)	ENSGACG00000012239	ENSGACG00000012231	pip5k1ab (ENSGACG00000012182)	znf687a (ENSGACG00000012175)	ENSGACG00000012171	ENSGACG00000012156	aqp10a (ENSGACG00000012154)	C1orf43 (ENSGACG00000012147) #22	tuft1a (ENSGACG00000012131)	ENSGACG00000012120	SHE (ENSGACG00000012115) #16	CHRNB2 (ENSGACG00000012100) #13	s100t (ENSGACG00000012092)	ENSGACG00000012088	ENSGACG00000012083	SHC1 (ENSGACG00000012077) #7	flad1 (ENSGACG00000012045)	ENSGACG00000012043	efna3b (ENSGACG00000012038)	efna1b (ENSGACG00000012018)	slc50a1 (ENSGACG00000012002)	TRIM46 (ENSGACG00000011991)	TMEM107 (ENSGACG00000011983)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000154371.a.b	ENSGT00620000088774	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00940000154172.b	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000010130	ENSCGOG00000010129	ENSCGOG00000010128	them4 (ENSCGOG00000010127)	ENSCGOG00000010123	ENSCGOG00000010120	pip5k1ab (ENSCGOG00000009402)	ENSCGOG00000009291	psmd4b (ENSCGOG00000009141)	znf687a (ENSCGOG00000009133)	ENSCGOG00000009129	ENSCGOG00000009118	ENSCGOG00000009030	aqp10a (ENSCGOG00000008642)	ENSCGOG00000008632	C1orf43 (ENSCGOG00000008628) #22	tuft1a (ENSCGOG00000008627)	ENSCGOG00000008624	SHE (ENSCGOG00000008620) #16	CHRNB2 (ENSCGOG00000008616) #13	s100t (ENSCGOG00000008612)	ENSCGOG00000008608	s100a11 (ENSCGOG00000008603)	pbxip1b (ENSCGOG00000008590)	lenep (ENSCGOG00000008587)	SHC1 (ENSCGOG00000008578) #7	flad1 (ENSCGOG00000008505)	ENSCGOG00000008498	efna3b (ENSCGOG00000008496)	efna1b (ENSCGOG00000008494)	slc50a1 (ENSCGOG00000008491)
Pike perch	MODERN SPECIES	15	nbn (ENSSLUG00000010647)	ENSSLUG00000010654	zgc:174935 (ENSSLUG00000010656)	si:dkey-87o1.2 (ENSSLUG00000010660)	them4 (ENSSLUG00000010661)	ENSSLUG00000010667	ENSSLUG00000010690	pip5k1ab (ENSSLUG00000010721)	ENSSLUG00000011011	psmd4b (ENSSLUG00000011032)	znf687a (ENSSLUG00000011183)	ENSSLUG00000011193	ENSSLUG00000011209	ENSSLUG00000011293	ENSSLUG00000011674	C1orf43 (ENSSLUG00000011690) #22	tuft1a (ENSSLUG00000011695)	ENSSLUG00000011703	ENSSLUG00000011708 #16	CHRNB2 (ENSSLUG00000011719) #13	s100t (ENSSLUG00000011791)	ENSSLUG00000011797	s100a11 (ENSSLUG00000011804)	pbxip1b (ENSSLUG00000011806)	lenep (ENSSLUG00000011815)	SHC1 (ENSSLUG00000011823) #7	flad1 (ENSSLUG00000011868)	ENSSLUG00000012083	efna3b (ENSSLUG00000012090)	efna1b (ENSSLUG00000012098)	slc50a1 (ENSSLUG00000012104)
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00390000000521	ENSGT00940000154371.a.b	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215.a	ENSGT00940000154703.j	ENSGT01100000263515.a.b.a.b.b.k.a.a.a	ENSGT00530000064050.b	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692.b	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366.a #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01030000234835	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d
Fugu	MODERN SPECIES	19	them4 (ENSTRUG00000002448)	ENSTRUG00000001436	ENSTRUG00000025364	pip5k1ab (ENSTRUG00000003020)	ENSTRUG00000022000	ENSTRUG00000029153	psmd4b (ENSTRUG00000002109)	znf687a (ENSTRUG00000003078)	ENSTRUG00000026520	ENSTRUG00000024281	ENSTRUG00000023419	ENSTRUG00000003146	ENSTRUG00000003201	aqp10a (ENSTRUG00000020692)	ENSTRUG00000021748	C1orf43 (ENSTRUG00000005154) #22	tuft1a (ENSTRUG00000024871)	ENSTRUG00000005390	SHE (ENSTRUG00000005642) #16	CHRNB2 (ENSTRUG00000005762) #13	s100t (ENSTRUG00000026002)	ENSTRUG00000027433	ENSTRUG00000023594	lenep (ENSTRUG00000020223)	SHC1 (ENSTRUG00000006487) #7	flad1 (ENSTRUG00000006861)	ENSTRUG00000022283	efna3b (ENSTRUG00000006985)	efna1b (ENSTRUG00000023974)	slc50a1 (ENSTRUG00000007173)	TRIM46 (ENSTRUG00000007247)
Tetraodon	MODERN SPECIES	23	OSGIN2 (ENSTNIG00000018350)	nbn (ENSTNIG00000018349)	them4 (ENSTNIG00000018348)	ENSTNIG00000018347	ENSTNIG00000018346	pip5k1ab (ENSTNIG00000018345)	ENSTNIG00000018344	psmd4b (ENSTNIG00000018343)	znf687a (ENSTNIG00000018342)	ENSTNIG00000001801	ENSTNIG00000018341	aqp10a (ENSTNIG00000018340)	ENSTNIG00000001192	aqp10a (ENSTNIG00000018339)	ENSTNIG00000018338	C1orf43 (ENSTNIG00000018337) #22	tuft1a (ENSTNIG00000018336)	ENSTNIG00000018335	SHE (ENSTNIG00000018334) #16	CHRNB2 (ENSTNIG00000018333) #13	s100t (ENSTNIG00000001647)	ENSTNIG00000018332	SHC1 (ENSTNIG00000018331) #7	flad1 (ENSTNIG00000018330)	ENSTNIG00000018329	efna1b (ENSTNIG00000018328)	slc50a1 (ENSTNIG00000018327)	TRIM46 (ENSTNIG00000018326)	TMEM107 (ENSTNIG00000018325)	s100a10b (ENSTNIG00000018324)	ENSTNIG00000018323
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005014205	ENSMMDG00005014209	them4 (ENSMMDG00005014214)	ENSMMDG00005014217	ENSMMDG00005014234	pip5k1ab (ENSMMDG00005014243)	ENSMMDG00005014252	psmd4b (ENSMMDG00005014264)	znf687a (ENSMMDG00005014271)	ENSMMDG00005014279	ENSMMDG00005014282	ENSMMDG00005014288	ENSMMDG00005014297	aqp10a (ENSMMDG00005014315)	ENSMMDG00005014733	C1orf43 (ENSMMDG00005014738) #22	tuft1a (ENSMMDG00005014750)	ENSMMDG00005014792	SHE (ENSMMDG00005014913) #16	CHRNB2 (ENSMMDG00005014916) #13	s100t (ENSMMDG00005014919)	ENSMMDG00005014921	s100a11 (ENSMMDG00005014923)	pbxip1b (ENSMMDG00005014925)	lenep (ENSMMDG00005014928)	SHC1 (ENSMMDG00005014933) #7	flad1 (ENSMMDG00005015268)	ENSMMDG00005015274	efna3b (ENSMMDG00005015277)	efna1b (ENSMMDG00005015282)	slc50a1 (ENSMMDG00005015284)
Cod	MODERN SPECIES	2	si:dkey-87o1.2 (ENSGMOG00000008021)	them4 (ENSGMOG00000022817)	ENSGMOG00000008012	ENSGMOG00000008008	PIP5K1A (ENSGMOG00000007986)	ENSGMOG00000007994	psmd4b (ENSGMOG00000003095)	znf687a (ENSGMOG00000027177)	ENSGMOG00000034138	ENSGMOG00000030489	ENSGMOG00000037102	ENSGMOG00000007963	aqp10a (ENSGMOG00000007960)	ENSGMOG00000029608	ENSGMOG00000035644	ENSGMOG00000007932 #22	tuft1a (ENSGMOG00000007924)	ENSGMOG00000007910	ENSGMOG00000007899 #16	ENSGMOG00000007897 #13	s100t (ENSGMOG00000017367)	ENSGMOG00000031542	ENSGMOG00000029170	lenep (ENSGMOG00000025565)	ENSGMOG00000007874 #7	flad1 (ENSGMOG00000007867)	ENSGMOG00000026658	ENSGMOG00000022656	ENSGMOG00000033271	efna1b (ENSGMOG00000019142)	slc50a1 (ENSGMOG00000019135)
Euteleosteomorpha	ANCESTRAL SPECIES	40					ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795
Acanthomorphata	ANCESTRAL SPECIES	22	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00390000013102.a.b	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Pinecone sodierfish	MODERN SPECIES	2	tmem79a (ENSMMDG00005002190)	ENSMMDG00005002189	RPS19 (ENSMMDG00005002180)	ENSMMDG00005001978	ENSMMDG00005001960	ndufv1 (ENSMMDG00005001276)	ENSMMDG00005001202	ENSMMDG00005001193	ENSMMDG00005001179	PIP5K1A (ENSMMDG00005019571)	psmd4a (ENSMMDG00005019535)	znf687b (ENSMMDG00005019523)	aqp10b (ENSMMDG00005019521)	hax1 (ENSMMDG00005019515) #20	ubap2l (ENSMMDG00005019451) #21	C1orf43 (ENSMMDG00005019435) #22	ENSMMDG00005019428	cgnb (ENSMMDG00005019414)	pygo2 (ENSMMDG00005019404) #8	SHE (ENSMMDG00005019400) #16	s100s (ENSMMDG00005019390)	ENSMMDG00005019376	ENSMMDG00005019374	ENSMMDG00005019369	cks1b (ENSMMDG00005019366)	ENSMMDG00005019363	efna1a (ENSMMDG00005019360)	dpm3 (ENSMMDG00005019358)	trim46b (ENSMMDG00005019227)	s100a10a (ENSMMDG00005019210)	ENSMMDG00005019208
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Tiger tail seahorse	MODERN SPECIES	141	TMEM222 (ENSHCOG00000020997)	paqr7a (ENSHCOG00000021002)	sh3bgrl3 (ENSHCOG00000021020)	ENSHCOG00000021048	ENSHCOG00000021056	ENSHCOG00000000569	ENSHCOG00000000071	ndufv1 (ENSHCOG00000002424)	ENSHCOG00000002449	ENSHCOG00000002460	PIP5K1A (ENSHCOG00000002475)	psmd4a (ENSHCOG00000002488)	znf687b (ENSHCOG00000002511)	hax1 (ENSHCOG00000002524) #20	ubap2l (ENSHCOG00000002534) #21	C1orf43 (ENSHCOG00000002551) #22	ENSHCOG00000002566	cgnb (ENSHCOG00000002577)	pygo2 (ENSHCOG00000002584) #8	s100s (ENSHCOG00000002600)	s100u (ENSHCOG00000002603)	ENSHCOG00000002606	ENSHCOG00000002613	cks1b (ENSHCOG00000002616)	ENSHCOG00000002626	efna1a (ENSHCOG00000002631)	dpm3 (ENSHCOG00000002641)	trim46b (ENSHCOG00000002651)	s100a10a (ENSHCOG00000002657)	snx27a (ENSHCOG00000002675)	chrna11 (ENSHCOG00000002691)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Tetraodontidae	ANCESTRAL SPECIES	60											ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00390000000920	ENSGT00950000183212.C.c.a
Fugu	MODERN SPECIES	3	zdhhc3b (ENSTRUG00000008146)	exosc7 (ENSTRUG00000008320)	CLEC3B (ENSTRUG00000008479)	ENSTRUG00000008547	ADGRB1 (ENSTRUG00000029303)	ENSTRUG00000008805	hnrnpr (ENSTRUG00000008817)	dnajc8 (ENSTRUG00000008994)	ENSTRUG00000022589	clk2a (ENSTRUG00000009138)	pip5k1aa (ENSTRUG00000009274)	psmd4a (ENSTRUG00000024969)	znf687b (ENSTRUG00000009576)	aqp10b (ENSTRUG00000009704)	ubap2l (ENSTRUG00000009888) #21	C1orf43 (ENSTRUG00000010377) #22	ENSTRUG00000031770	cgnb (ENSTRUG00000010526)	pygo2 (ENSTRUG00000031215) #8	SHE (ENSTRUG00000020280) #16	s100s (ENSTRUG00000028186)	ENSTRUG00000031177	SHE (ENSTRUG00000030513) #16	s100s (ENSTRUG00000010694)	s100u (ENSTRUG00000023841)	ENSTRUG00000032151	ENSTRUG00000025884	cks1b (ENSTRUG00000029865)	ENSTRUG00000010789	efna1a (ENSTRUG00000010820)	dpm3 (ENSTRUG00000010902)
Tetraodon	MODERN SPECIES	16	HERPUD2 (ENSTNIG00000017579)	ENSTNIG00000001374	ADGRB1 (ENSTNIG00000017578)	ENSTNIG00000017577	hnrnpr (ENSTNIG00000017576)	dnajc8 (ENSTNIG00000017575)	ENSTNIG00000017574	clk2a (ENSTNIG00000017573)	ENSTNIG00000017572	pip5k1aa (ENSTNIG00000017571)	psmd4a (ENSTNIG00000017570)	znf687b (ENSTNIG00000017569)	aqp10b (ENSTNIG00000017568)	hax1 (ENSTNIG00000000666) #20	ubap2l (ENSTNIG00000017567) #21	C1orf43 (ENSTNIG00000017566) #22	ENSTNIG00000017565	cgnb (ENSTNIG00000017564)	pygo2 (ENSTNIG00000017563) #8	SHE (ENSTNIG00000017562) #16	s100s (ENSTNIG00000017561)	ENSTNIG00000017560	ENSTNIG00000017559	efna1a (ENSTNIG00000017558)	dpm3 (ENSTNIG00000001321)	trim46b (ENSTNIG00000017557)	s100a10a (ENSTNIG00000017556)	ENSTNIG00000017555	snx27a (ENSTNIG00000017554)	chrna11 (ENSTNIG00000017553)	ENSTNIG00000017552 #11
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Ballan wrasse	MODERN SPECIES	312	tmem79a (ENSLBEG00000025723)	ENSLBEG00000025741	RPS19 (ENSLBEG00000025772)	ENSLBEG00000025795	ENSLBEG00000025808	ENSLBEG00000025824	ndufv1 (ENSLBEG00000025852)	ENSLBEG00000025889	ENSLBEG00000025904	pip5k1aa (ENSLBEG00000025921)	psmd4a (ENSLBEG00000025965)	znf687b (ENSLBEG00000026012)	aqp10b (ENSLBEG00000026065)	hax1 (ENSLBEG00000026107) #20	ubap2l (ENSLBEG00000026186) #21	C1orf43 (ENSLBEG00000026343) #22	ENSLBEG00000026314	cgnb (ENSLBEG00000026368)	pygo2 (ENSLBEG00000026408) #8	SHE (ENSLBEG00000026417) #16	s100s (ENSLBEG00000026439)	s100u (ENSLBEG00000026449)	ENSLBEG00000026460	ENSLBEG00000026517	cks1b (ENSLBEG00000026546)	ENSLBEG00000026565
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Perciformes	ANCESTRAL SPECIES	11	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Lumpfish	MODERN SPECIES	2	ENSCLMG00005001300	ENSCLMG00005001286	ENSCLMG00005017963	ENSCLMG00005017947	ENSCLMG00005017944	ndufv1 (ENSCLMG00005017594)	ENSCLMG00005017582	ENSCLMG00005017581	ENSCLMG00005017580	pip5k1aa (ENSCLMG00005017073)	psmd4a (ENSCLMG00005017016)	znf687b (ENSCLMG00005017012)	aqp10b (ENSCLMG00005017011)	hax1 (ENSCLMG00005017010) #20	ubap2l (ENSCLMG00005016930) #21	C1orf43 (ENSCLMG00005016913) #22	ENSCLMG00005016910	cgnb (ENSCLMG00005016890)	pygo2 (ENSCLMG00005016880) #8	SHE (ENSCLMG00005016878) #16	s100s (ENSCLMG00005016875)	s100u (ENSCLMG00005016874)	ENSCLMG00005016871	ENSCLMG00005016869	cks1b (ENSCLMG00005016868)	ENSCLMG00005016867	efna1a (ENSCLMG00005016866)	dpm3 (ENSCLMG00005016864)	trim46b (ENSCLMG00005016689)	ENSCLMG00005016682	icn (ENSCLMG00005016680)
Stickleback	MODERN SPECIES	9	mef2d (ENSGACG00000004227)	tmem79a (ENSGACG00000004231)	ENSGACG00000004235	ENSGACG00000004236	ENSGACG00000004248	ENSGACG00000004267	ndufv1 (ENSGACG00000004271)	ENSGACG00000004307	ENSGACG00000004315	ENSGACG00000004318	pip5k1aa (ENSGACG00000004332)	znf687b (ENSGACG00000004387)	aqp10b (ENSGACG00000004393)	hax1 (ENSGACG00000004434) #20	ubap2l (ENSGACG00000004446) #21	C1orf43 (ENSGACG00000004466) #22	ENSGACG00000004468	cgnb (ENSGACG00000004475)	ENSGACG00000004486	SHE (ENSGACG00000004491) #16	s100s (ENSGACG00000004501)	s100u (ENSGACG00000004506)	ENSGACG00000004510	cks1b (ENSGACG00000004512)	ENSGACG00000004526	efna1a (ENSGACG00000004534)	dpm3 (ENSGACG00000004537)	trim46b (ENSGACG00000004540)	ENSGACG00000004547	ENSGACG00000004549	ENSGACG00000004558
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Channel bull blenny	MODERN SPECIES	2	ENSCGOG00000003266	ENSCGOG00000003257	ENSCGOG00000003238	ENSCGOG00000002236	ENSCGOG00000002171	ENSCGOG00000002163	ndufv1 (ENSCGOG00000002055)	ENSCGOG00000002049	ENSCGOG00000002046	pip5k1aa (ENSCGOG00000001552)	psmd4a (ENSCGOG00000001348)	znf687b (ENSCGOG00000001305)	aqp10b (ENSCGOG00000001281)	hax1 (ENSCGOG00000001268) #20	ubap2l (ENSCGOG00000014495) #21	C1orf43 (ENSCGOG00000014316) #22	ENSCGOG00000014314	cgnb (ENSCGOG00000014304)	pygo2 (ENSCGOG00000014302) #8	SHE (ENSCGOG00000014301) #16	s100s (ENSCGOG00000014300)	s100u (ENSCGOG00000014298)	ENSCGOG00000014297	ENSCGOG00000014295	cks1b (ENSCGOG00000014272)	ENSCGOG00000014271	ENSCGOG00000014268	efna1a (ENSCGOG00000014260)	dpm3 (ENSCGOG00000014257)	trim46b (ENSCGOG00000014248)	s100a10a (ENSCGOG00000014244)
Pike perch	MODERN SPECIES	13	mrpl24 (ENSSLUG00000013318)	ENSSLUG00000013308	mef2d (ENSSLUG00000013297)	ENSSLUG00000013287	ENSSLUG00000013279	ENSSLUG00000013272	ENSSLUG00000013265	ndufv1 (ENSSLUG00000013201)	ENSSLUG00000013187	pip5k1aa (ENSSLUG00000013153)	psmd4a (ENSSLUG00000013139)	znf687b (ENSSLUG00000013128)	aqp10b (ENSSLUG00000013113)	hax1 (ENSSLUG00000013100) #20	ubap2l (ENSSLUG00000013008) #21	C1orf43 (ENSSLUG00000012987) #22	ENSSLUG00000012984	cgnb (ENSSLUG00000012965)	pygo2 (ENSSLUG00000012956) #8	SHE (ENSSLUG00000012951) #16	s100s (ENSSLUG00000012947)	s100u (ENSSLUG00000012946)	ENSSLUG00000012942	ENSSLUG00000012935	cks1b (ENSSLUG00000012930)	ENSSLUG00000012927	efna1a (ENSSLUG00000012923)	dpm3 (ENSSLUG00000012919)	trim46b (ENSSLUG00000012907)	s100a10a (ENSSLUG00000012898)	icn2 (ENSSLUG00000012896)
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.b.h	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Gilthead seabream	MODERN SPECIES	17	ENSSAUG00010013083	RPS19 (ENSSAUG00010013077)	ENSSAUG00010013074	ENSSAUG00010013072	ENSSAUG00010013069	NDUFV1 (ENSSAUG00010012863)	ENSSAUG00010012858	ENSSAUG00010012856	pip5k1aa (ENSSAUG00010012843)	ENSSAUG00010012838	psmd4a (ENSSAUG00010012828)	znf687b (ENSSAUG00010012836)	aqp10b (ENSSAUG00010012827)	hax1 (ENSSAUG00010012824) #20	ubap2l (ENSSAUG00010007498) #21	C1orf43 (ENSSAUG00010007442) #22	ENSSAUG00010007436	cgnb (ENSSAUG00010007430)	pygo2 (ENSSAUG00010007428) #8	SHE (ENSSAUG00010007427) #16	s100s (ENSSAUG00010007425)	s100u (ENSSAUG00010007422)	ENSSAUG00010007421	cks1b (ENSSAUG00010007420)	ENSSAUG00010007418	ENSSAUG00010007415	efna1a (ENSSAUG00010007414)	dpm3 (ENSSAUG00010007413)	trim46b (ENSSAUG00010007218)	s100a10a (ENSSAUG00010007214)	icn (ENSSAUG00010007211)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Large yellow croaker	MODERN SPECIES	484	map7d1b (ENSLCRG00005020478)	thrap3b (ENSLCRG00005020473)	eva1bb (ENSLCRG00005020472)	LSM10 (ENSLCRG00005020471)	oscp1a (ENSLCRG00005020381)	ENSLCRG00005020362	zc3h12ab (ENSLCRG00005020357)	smim13 (ENSLCRG00005020351)	nedd9 (ENSLCRG00005020348)	pip5k1aa (ENSLCRG00005020307)	psmd4a (ENSLCRG00005020248)	znf687b (ENSLCRG00005020231)	aqp10b (ENSLCRG00005020225)	hax1 (ENSLCRG00005020218) #20	ubap2l (ENSLCRG00005020158) #21	C1orf43 (ENSLCRG00005020121) #22	ENSLCRG00005020116	cgnb (ENSLCRG00005020110)	pygo2 (ENSLCRG00005020109) #8	SHE (ENSLCRG00005020108) #16	s100s (ENSLCRG00005020106)	s100u (ENSLCRG00005020105)	ENSLCRG00005020103	ENSLCRG00005020094	cks1b (ENSLCRG00005020090)	ENSLCRG00005020085	efna1a (ENSLCRG00005020081)	dpm3 (ENSLCRG00005020077)	trim46b (ENSLCRG00005020048)	s100a10a (ENSLCRG00005020045)	ENSLCRG00005020041
European seabass	MODERN SPECIES	22	MRPL24 (ENSDLAG00005029464)	ENSDLAG00005012159	ENSDLAG00005012278	ENSDLAG00005031202	ENSDLAG00005029889	ENSDLAG00005012352	ENSDLAG00005012480	ENSDLAG00005013247	ENSDLAG00005013355	ENSDLAG00005013496	ENSDLAG00005013564	ENSDLAG00005013691	ENSDLAG00005013734	znf687b (ENSDLAG00005013710)	ubap2l (ENSDLAG00005013766) #21	C1orf43 (ENSDLAG00005026690) #22	ENSDLAG00005013985	cgnb (ENSDLAG00005014005)	ENSDLAG00005014055 #16	s100s (ENSDLAG00005014068)	s100u (ENSDLAG00005014073)	ENSDLAG00005029596	ENSDLAG00005035112	ENSDLAG00005014097	efna1a (ENSDLAG00005014125)	dpm3 (ENSDLAG00005031694)	trim46b (ENSDLAG00005014144)	s100a10a (ENSDLAG00005027842)	ENSDLAG00005014220	snx27a (ENSDLAG00005014237)	ENSDLAG00005014716
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00950000183155.a.b.a.a.b.d	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Climbing perch	MODERN SPECIES	2	ENSATEG00000010406	ENSATEG00000010376	ENSATEG00000026875	ENSATEG00000010310	ENSATEG00000010287	ENSATEG00000010268	ENSATEG00000010224	ENSATEG00000010203	ENSATEG00000010183	ENSATEG00000010129	ENSATEG00000010117	znf687b (ENSATEG00000010098)	aqp10b (ENSATEG00000009841)	hax1 (ENSATEG00000009809) #20	ubap2l (ENSATEG00000009768) #21	C1orf43 (ENSATEG00000009719) #22	ENSATEG00000028947	cgnb (ENSATEG00000009585)	pygo2 (ENSATEG00000009563) #8	ENSATEG00000009557 #16	s100s (ENSATEG00000009549)	s100u (ENSATEG00000029655)	ENSATEG00000026985	ENSATEG00000009526	ENSATEG00000009515	ENSATEG00000009499	efna1a (ENSATEG00000009466)	dpm3 (ENSATEG00000009449)	trim46b (ENSATEG00000009408)	ENSATEG00000009397	ENSATEG00000009392
Siamese fighting fish	MODERN SPECIES	2	mrpl24 (ENSBSLG00000014676)	ENSBSLG00000014691	mef2d (ENSBSLG00000014742)	tmem79a (ENSBSLG00000014819)	ENSBSLG00000014824	ENSBSLG00000014849	ndufv1 (ENSBSLG00000014918)	ENSBSLG00000015548	ENSBSLG00000015563	pip5k1aa (ENSBSLG00000015580)	psmd4a (ENSBSLG00000015665)	znf687b (ENSBSLG00000015865)	aqp10b (ENSBSLG00000015875)	hax1 (ENSBSLG00000015884) #20	ubap2l (ENSBSLG00000015899) #21	C1orf43 (ENSBSLG00000016003) #22	ENSBSLG00000016008	pygo2 (ENSBSLG00000016016) #8	SHE (ENSBSLG00000016017) #16	s100s (ENSBSLG00000016024)	ENSBSLG00000016029	ENSBSLG00000016034	ENSBSLG00000016041	cks1b (ENSBSLG00000016050)	ENSBSLG00000016062	efna1a (ENSBSLG00000016065)	dpm3 (ENSBSLG00000016066)	trim46b (ENSBSLG00000016069)	s100a10b (ENSBSLG00000016077)	ENSBSLG00000016079	snx27a (ENSBSLG00000016097)
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000016197	ENSMAMG00000016215	ENSMAMG00000016304	ENSMAMG00000027787	ENSMAMG00000016335	ENSMAMG00000016351	ENSMAMG00000016428	ENSMAMG00000016435	ENSMAMG00000016460	PIP5K1A (ENSMAMG00000016488)	ENSMAMG00000016545	znf687b (ENSMAMG00000016586)	aqp10b (ENSMAMG00000016569)	hax1 (ENSMAMG00000025191) #20	ubap2l (ENSMAMG00000016602) #21	C1orf43 (ENSMAMG00000016647) #22	ENSMAMG00000025598	cgnb (ENSMAMG00000016664)	pygo2 (ENSMAMG00000016672) #8	ENSMAMG00000016681 #16	s100s (ENSMAMG00000016687)	ENSMAMG00000024745	ENSMAMG00000024973	ENSMAMG00000016808	cks1b (ENSMAMG00000026635)	ENSMAMG00000016832	efna1a (ENSMAMG00000016844)	dpm3 (ENSMAMG00000016864)	trim46b (ENSMAMG00000000378)	s100a10a (ENSMAMG00000000471)	ENSMAMG00000027096
Carangaria	ANCESTRAL SPECIES	14	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00950000183155.a.b.a.a.b.d	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Seriola	ANCESTRAL SPECIES	12	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Greater amberjack	MODERN SPECIES	48	ENSSDUG00000014978	ENSSDUG00000017318	ENSSDUG00000017371	ndufv1 (ENSSDUG00000017383)	ENSSDUG00000017410	ENSSDUG00000017416	ENSSDUG00000017424	ENSSDUG00000017434	ENSSDUG00000017446	pip5k1aa (ENSSDUG00000017460)	psmd4a (ENSSDUG00000017529)	znf687b (ENSSDUG00000017625)	aqp10b (ENSSDUG00000017662)	hax1 (ENSSDUG00000017668) #20	ubap2l (ENSSDUG00000017703) #21	C1orf43 (ENSSDUG00000017804) #22	ENSSDUG00000017832	cgnb (ENSSDUG00000017863)	pygo2 (ENSSDUG00000017956) #8	SHE (ENSSDUG00000017964) #16	s100s (ENSSDUG00000017975)	s100u (ENSSDUG00000018011)	ENSSDUG00000018030	ENSSDUG00000018041	cks1b (ENSSDUG00000018075)	ENSSDUG00000018087	efna1a (ENSSDUG00000018101)	dpm3 (ENSSDUG00000018108)	trim46b (ENSSDUG00000018130)	s100a10a (ENSSDUG00000018200)	icn (ENSSDUG00000018209)
Yellowtail amberjack	MODERN SPECIES	2834	ENSSLDG00000015432	ENSSLDG00000015348	ENSSLDG00000015321	ndufv1 (ENSSLDG00000015292)	ENSSLDG00000015275	ENSSLDG00000015262	ENSSLDG00000015246	ENSSLDG00000015233	ENSSLDG00000015213	pip5k1aa (ENSSLDG00000015196)	psmd4a (ENSSLDG00000015045)	znf687b (ENSSLDG00000014947)	aqp10b (ENSSLDG00000014929)	hax1 (ENSSLDG00000014903) #20	ubap2l (ENSSLDG00000014825) #21	C1orf43 (ENSSLDG00000014790) #22	ENSSLDG00000014772	cgnb (ENSSLDG00000014735)	pygo2 (ENSSLDG00000014714) #8	SHE (ENSSLDG00000014704) #16	s100s (ENSSLDG00000014694)	s100u (ENSSLDG00000014685)	ENSSLDG00000014676	ENSSLDG00000014665	cks1b (ENSSLDG00000014648)	ENSSLDG00000014634	efna1a (ENSSLDG00000014614)	dpm3 (ENSSLDG00000014600)	trim46b (ENSSLDG00000014551)	s100a10b (ENSSLDG00000014481)	icn (ENSSLDG00000014466)
Barramundi perch	MODERN SPECIES	279		ENSLCAG00010022686	ENSLCAG00010022685	RPS19 (ENSLCAG00010022675)	ENSLCAG00010022668	ENSLCAG00010022663	ENSLCAG00010022651	ndufv1 (ENSLCAG00010022642)	ENSLCAG00010022636	ENSLCAG00010022630	pip5k1aa (ENSLCAG00010022604)	psmd4a (ENSLCAG00010022594)	znf687b (ENSLCAG00010022589)	aqp10b (ENSLCAG00010022583)	hax1 (ENSLCAG00010022581) #20	C1orf43 (ENSLCAG00010022574) #22	ENSLCAG00010022566	cgnb (ENSLCAG00010022529)	pygo2 (ENSLCAG00010022519) #8	SHE (ENSLCAG00010022518) #16	ENSLCAG00010022515	s100s (ENSLCAG00010022513)	s100u (ENSLCAG00010022510)	ENSLCAG00010022508	ENSLCAG00010022506	cks1b (ENSLCAG00010022503)	ENSLCAG00010022502	efna1a (ENSLCAG00010022500)	dpm3 (ENSLCAG00010022499)	trim46b (ENSLCAG00010022498)	s100a10a (ENSLCAG00010022493)
Pleuronectoidei	ANCESTRAL SPECIES	54	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Turbot	MODERN SPECIES	14	ENSSMAG00000036293	ENSSMAG00000026760	ENSSMAG00000004085	ENSSMAG00000004049	ENSSMAG00000004042	ENSSMAG00000004017	ENSSMAG00000004008	ENSSMAG00000003990	PIP5K1A (ENSSMAG00000003911)	ENSSMAG00000003880	znf687b (ENSSMAG00000003811)	aqp10b (ENSSMAG00000003704)	ENSSMAG00000003690	hax1 (ENSSMAG00000003665) #20	ubap2l (ENSSMAG00000003456) #21	C1orf43 (ENSSMAG00000003418) #22	ENSSMAG00000003389	cgnb (ENSSMAG00000003356)	pygo2 (ENSSMAG00000026931) #8	ENSSMAG00000003330 #16	s100u (ENSSMAG00000035207)	s100s (ENSSMAG00000003264)	ENSSMAG00000003243	ENSSMAG00000025169	ENSSMAG00000026861	efna1a (ENSSMAG00000003221)	dpm3 (ENSSMAG00000003191)	trim46b (ENSSMAG00000003138)	s100a10a (ENSSMAG00000034030)	ENSSMAG00000002999	ENSSMAG00000002961
Tongue sole	MODERN SPECIES	9	ENSCSEG00000006971	si:dkey-266f7.9 (ENSCSEG00000006976)	rpz2 (ENSCSEG00000006984)	krit1 (ENSCSEG00000006989)	cyp51 (ENSCSEG00000007021)	ENSCSEG00000007110	ENSCSEG00000007119	ENSCSEG00000007128	ENSCSEG00000007135	PIP5K1A (ENSCSEG00000007140)	psmd4a (ENSCSEG00000007157)	znf687b (ENSCSEG00000007216)	aqp10b (ENSCSEG00000007250)	hax1 (ENSCSEG00000007258) #20	ubap2l (ENSCSEG00000007266) #21	C1orf43 (ENSCSEG00000007289) #22	ENSCSEG00000007311	cgnb (ENSCSEG00000007335)	pygo2 (ENSCSEG00000007361) #8	SHE (ENSCSEG00000007372) #16	s100s (ENSCSEG00000007377)	s100u (ENSCSEG00000007382)	ENSCSEG00000007384	ENSCSEG00000007401	cks1b (ENSCSEG00000007408)	ENSCSEG00000007421	efna1a (ENSCSEG00000007442)	dpm3 (ENSCSEG00000007456)	trim46b (ENSCSEG00000007470)	s100a10a (ENSCSEG00000007523)	icn (ENSCSEG00000007528)
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Oryzias	ANCESTRAL SPECIES	24	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Oryzias_b	ANCESTRAL SPECIES	31	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324.c #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000168838	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Indian medaka	MODERN SPECIES	29	ENSOMEG00000005605	mef2d (ENSOMEG00000005645)	ENSOMEG00000005658	ENSOMEG00000005719	ENSOMEG00000005732	ndufv1 (ENSOMEG00000005760)	ENSOMEG00000005770	ENSOMEG00000005775	ENSOMEG00000005784	ENSOMEG00000005827	PSMD4 (ENSOMEG00000005853)	znf687b (ENSOMEG00000005886)	aqp10b (ENSOMEG00000005898)	hax1 (ENSOMEG00000005917) #20	ubap2l (ENSOMEG00000006074) #21	C1orf43 (ENSOMEG00000006115) #22	ENSOMEG00000006189	cgnb (ENSOMEG00000006237)	pygo2 (ENSOMEG00000006276) #8	s100s (ENSOMEG00000006300)	s100u (ENSOMEG00000006309)	ENSOMEG00000006318	ENSOMEG00000006328	cks1b (ENSOMEG00000006346)	ENSOMEG00000006357	efna1a (ENSOMEG00000006394)	dpm3 (ENSOMEG00000006423)	trim46b (ENSOMEG00000006470)	s100a10a (ENSOMEG00000006493)	ENSOMEG00000006523	SNX27 (ENSOMEG00000000967)
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000002574	ENSOJAG00000002570	PTK2 (ENSOJAG00000002123)	ENSOJAG00000002025	tmem79a (ENSOJAG00000001928)	ENSOJAG00000001917	znf687b (ENSOJAG00000001900)	psmd4a (ENSOJAG00000001863)	ENSOJAG00000001849	ENSOJAG00000001838	ndufv1 (ENSOJAG00000001689)	ENSOJAG00000001647	aqp10b (ENSOJAG00000007966)	hax1 (ENSOJAG00000007932) #20	ubap2l (ENSOJAG00000006692) #21	C1orf43 (ENSOJAG00000006537) #22	ENSOJAG00000006375	s100s (ENSOJAG00000006354)	s100u (ENSOJAG00000006347)	ENSOJAG00000006340	ENSOJAG00000006257	cks1b (ENSOJAG00000006237)	ENSOJAG00000006227	efna1a (ENSOJAG00000006214)	dpm3 (ENSOJAG00000006206)	trim46b (ENSOJAG00000006183)	s100a10a (ENSOJAG00000006161)	ENSOJAG00000006150	snx27a (ENSOJAG00000006063)	chrna11 (ENSOJAG00000005893)	ENSOJAG00000005839 #11
Oryzias_a	ANCESTRAL SPECIES	64	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00390000000920	ENSGT00950000183212.C.c.a
Chinese medaka	MODERN SPECIES	944						ENSOSIG00000005076	ENSOSIG00000005073	ndufv1 (ENSOSIG00000002271)	ENSOSIG00000002192	pip5k1aa (ENSOSIG00000002118)	znf687b (ENSOSIG00000002084)	aqp10b (ENSOSIG00000002062)	hax1 (ENSOSIG00000001975) #20	psmd4a (ENSOSIG00000001050)	ubap2l (ENSOSIG00000000957) #21	C1orf43 (ENSOSIG00000000936) #22	ENSOSIG00000000926	pygo2 (ENSOSIG00000000921) #8	ENSOSIG00000000907	ENSOSIG00000000904	ENSOSIG00000000902	cks1b (ENSOSIG00000000901)	efna1a (ENSOSIG00000000895)	dpm3 (ENSOSIG00000000890)	trim46b (ENSOSIG00000000878)
Japanese Medaka HdrR	MODERN SPECIES	2	MEF2D (ENSORLG00000027797)	ENSORLG00000027487	ENSORLG00000028118	ENSORLG00000026266	ENSORLG00000000281	ENSORLG00000000286	ndufv1 (ENSORLG00000000297)	ENSORLG00000026548	ENSORLG00000000301	ENSORLG00000030270	psmd4a (ENSORLG00000000320)	znf687b (ENSORLG00000025604)	aqp10b (ENSORLG00000000339)	hax1 (ENSORLG00000028501) #20	ubap2l (ENSORLG00000000418) #21	C1orf43 (ENSORLG00000000442) #22	ENSORLG00000000444	cgnb (ENSORLG00000000455)	pygo2 (ENSORLG00000023708) #8	ENSORLG00000029460 #16	s100s (ENSORLG00000022495)	s100u (ENSORLG00000025692)	ENSORLG00000025134	ENSORLG00000000477	cks1b (ENSORLG00000026617)	ENSORLG00000027127	ENSORLG00000023971	efna1a (ENSORLG00000029418)	dpm3 (ENSORLG00000000494)	trim46b (ENSORLG00000000520)	s100a10b (ENSORLG00000000531)
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Mangrove rivulus	MODERN SPECIES	2	ENSKMAG00000010624	RPS19 (ENSKMAG00000010771)	ENSKMAG00000010795	ENSKMAG00000010805	ndufv1 (ENSKMAG00000010825)	ENSKMAG00000010850	ENSKMAG00000010861	PIP5K1A (ENSKMAG00000010870)	psmd4a (ENSKMAG00000010902)	ENSKMAG00000010953	znf687b (ENSKMAG00000010973)	aqp10b (ENSKMAG00000011004)	hax1 (ENSKMAG00000011038) #20	ubap2l (ENSKMAG00000011082) #21	ENSKMAG00000011172	C1orf43 (ENSKMAG00000011191) #22	cgnb (ENSKMAG00000011220)	pygo2 (ENSKMAG00000011253) #8	SHE (ENSKMAG00000011270) #16	s100s (ENSKMAG00000011292)	s100u (ENSKMAG00000011309)	ENSKMAG00000011320	ENSKMAG00000011336	cks1b (ENSKMAG00000011353)	ENSKMAG00000011369	efna1a (ENSKMAG00000011385)	dpm3 (ENSKMAG00000011399)	trim46b (ENSKMAG00000011413)	s100a10a (ENSKMAG00000011450)	icn (ENSKMAG00000011467)	snx27a (ENSKMAG00000011486)
Turquoise killifish	MODERN SPECIES	1628	mrpl24 (ENSNFUG00015022310)	MEF2D (ENSNFUG00015022324)	tmem79a (ENSNFUG00015009635)	ENSNFUG00015009646	ENSNFUG00015009707	ENSNFUG00015009951	ndufv1 (ENSNFUG00015009972)	ENSNFUG00015010078	PIP5K1A (ENSNFUG00015010120)	psmd4a (ENSNFUG00015010186)	znf687b (ENSNFUG00015010236)	aqp10b (ENSNFUG00015010295)	HAX1 (ENSNFUG00015011057) #20	UBAP2L (ENSNFUG00015011109) #21	ENSNFUG00015011197	C1ORF43 (ENSNFUG00015011204) #22	ENSNFUG00015011229	cgnb (ENSNFUG00015011242)	PYGO2 (ENSNFUG00015011267) #8	SHE (ENSNFUG00015011276) #16	s100s (ENSNFUG00015011287)	PBXIP1A (ENSNFUG00015011302)	S100A11 (ENSNFUG00015011315)	RPLP1 (ENSNFUG00015011322)	clptm1l (ENSNFUG00015011453)	ENSNFUG00015012662	ENSNFUG00015012663	ENSNFUG00015012665	ENSNFUG00015012666	ENSNFUG00015012670	TRPS1 (ENSNFUG00015012675)
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
NAME_4	ANCESTRAL SPECIES	10	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d
Mummichog	MODERN SPECIES	2348	mef2d (ENSFHEG00000010583)	tmem79a (ENSFHEG00000010593)	ENSFHEG00000010608	RPS19 (ENSFHEG00000010653)	ENSFHEG00000011209	ENSFHEG00000011229	ndufv1 (ENSFHEG00000011238)	ENSFHEG00000011248	ENSFHEG00000000255	PIP5K1A (ENSFHEG00000011322)	psmd4a (ENSFHEG00000011374)	znf687b (ENSFHEG00000011379)	aqp10b (ENSFHEG00000011413)	hax1 (ENSFHEG00000011477) #20	ubap2l (ENSFHEG00000011553) #21	C1orf43 (ENSFHEG00000011582) #22	ENSFHEG00000011599	cgnb (ENSFHEG00000011611)	pygo2 (ENSFHEG00000011620) #8	SHE (ENSFHEG00000011626) #16	s100s (ENSFHEG00000011640)	s100u (ENSFHEG00000011668)	ENSFHEG00000011676	ENSFHEG00000011689	cks1b (ENSFHEG00000011707)	ENSFHEG00000000265	efna1a (ENSFHEG00000011761)	dpm3 (ENSFHEG00000011770)	trim46b (ENSFHEG00000011810)	ENSFHEG00000011834	s100a10a (ENSFHEG00000011839)
Sheepshead minnow	MODERN SPECIES	203														CDKN2C (ENSCVAG00000017273)	ubap2l (ENSCVAG00000000444) #21	C1orf43 (ENSCVAG00000017363) #22	ENSCVAG00000017378	ENSCVAG00000017423	pygo2 (ENSCVAG00000017449) #8	ENSCVAG00000017483 #16	s100s (ENSCVAG00000017499)	s100u (ENSCVAG00000017508)	ENSCVAG00000017519	ENSCVAG00000000772	cks1b (ENSCVAG00000017551)	ENSCVAG00000017556	efna1a (ENSCVAG00000017560)	dpm3 (ENSCVAG00000017572)	trim46b (ENSCVAG00000017607)	s100a10a (ENSCVAG00000017616)	icn (ENSCVAG00000017622)
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Poecilia	ANCESTRAL SPECIES	55								ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
NAME_6	ANCESTRAL SPECIES	363									ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a.a	ENSGT00530000063948.a #8
Amazon molly	MODERN SPECIES	944								ENSPFOG00000010491	ENSPFOG00000010458	PIP5K1A (ENSPFOG00000023949)	psmd4a (ENSPFOG00000024342)	znf687b (ENSPFOG00000010179)	aqp10b (ENSPFOG00000010084)	hax1 (ENSPFOG00000010026) #20	ubap2l (ENSPFOG00000009623) #21	C1orf43 (ENSPFOG00000009435) #22	ENSPFOG00000009349
Sailfin molly	MODERN SPECIES	1036								ENSPLAG00000000176	ENSPLAG00000008293	ENSPLAG00000000179	psmd4a (ENSPLAG00000008357)	znf687b (ENSPLAG00000008375)	aqp10b (ENSPLAG00000008698)	hax1 (ENSPLAG00000008725) #20	ubap2l (ENSPLAG00000008857) #21	C1orf43 (ENSPLAG00000008919) #22	ENSPLAG00000008932	cgnb (ENSPLAG00000009018)	ENSPLAG00000009037
Guppy	MODERN SPECIES	441	ENSPREG00000020196	ENSPREG00000020182	ENSPREG00000020166	ENSPREG00000020162	ENSPREG00000020150	ENSPREG00000020108	ENSPREG00000020094	PIP5K1A (ENSPREG00000020072)	psmd4a (ENSPREG00000020043)	ENSPREG00000020031	znf687b (ENSPREG00000020006)	aqp10b (ENSPREG00000019991)	hax1 (ENSPREG00000019934) #20	ENSPREG00000019910	ubap2l (ENSPREG00000019846) #21	C1orf43 (ENSPREG00000019815) #22	ENSPREG00000019804	cgnb (ENSPREG00000019777)	pygo2 (ENSPREG00000019764) #8	SHE (ENSPREG00000019724) #16	s100s (ENSPREG00000019702)	ENSPREG00000019692	ENSPREG00000019668	ENSPREG00000019653	cks1b (ENSPREG00000019645)	ENSPREG00000019632	efna1a (ENSPREG00000019616)	dpm3 (ENSPREG00000019597)	trim46b (ENSPREG00000019553)	s100a10b (ENSPREG00000019496)	icn2 (ENSPREG00000019482)
Platyfish	MODERN SPECIES	4	mef2d (ENSXMAG00000015057)	ENSXMAG00000028213	ENSXMAG00000023896	ENSXMAG00000028381	RPS19 (ENSXMAG00000015051)	ENSXMAG00000015008	ENSXMAG00000027309	ndufv1 (ENSXMAG00000014972)	ENSXMAG00000014968	PIP5K1A (ENSXMAG00000015212)	psmd4a (ENSXMAG00000015234)	znf687b (ENSXMAG00000015254)	aqp10b (ENSXMAG00000023474)	hax1 (ENSXMAG00000014945) #20	ubap2l (ENSXMAG00000014867) #21	C1orf43 (ENSXMAG00000024844) #22	ENSXMAG00000027024	cgnb (ENSXMAG00000014842)	pygo2 (ENSXMAG00000024650) #8	SHE (ENSXMAG00000014826) #16	s100s (ENSXMAG00000014824)	s100u (ENSXMAG00000014820)	ENSXMAG00000014814	ENSXMAG00000014816	cks1b (ENSXMAG00000023898)	ENSXMAG00000025812	ENSXMAG00000029329	efna1a (ENSXMAG00000014802)	dpm3 (ENSXMAG00000020287)	trim46b (ENSXMAG00000027467)	s100a10a (ENSXMAG00000014763)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691.h	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Pomacentridae_A	ANCESTRAL SPECIES	37								ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00390000006215.b	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691.h	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT01100000264401	ENSGT00940000165795.d
Amphiprion	ANCESTRAL SPECIES	91	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00940000171101	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691.h	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT01100000264401	ENSGT00940000165795.d
Clown anemonefish	MODERN SPECIES	3447													aqp10b (ENSAOCG00000008833)	hax1 (ENSAOCG00000008886) #20	ubap2l (ENSAOCG00000000535) #21	C1orf43 (ENSAOCG00000009069) #22	ENSAOCG00000009100	cgnb (ENSAOCG00000009152)	pygo2 (ENSAOCG00000009175) #8	SHE (ENSAOCG00000009191) #16	s100s (ENSAOCG00000009236)	s100u (ENSAOCG00000009255)	ENSAOCG00000009269	ENSAOCG00000009285	cks1b (ENSAOCG00000009307)	ENSAOCG00000009314
Orange clownfish	MODERN SPECIES	8	mrpl24 (ENSAPEG00000007569)	HDGF (ENSAPEG00000007615)	prcc (ENSAPEG00000007636)	mrpl9 (ENSAPEG00000007650)	si:dkey-266f7.9 (ENSAPEG00000007676)	rpz2 (ENSAPEG00000007687)	krit1 (ENSAPEG00000007698)	cyp51 (ENSAPEG00000007764)	ENSAPEG00000007778	pip5k1aa (ENSAPEG00000007852)	psmd4a (ENSAPEG00000007908)	znf687b (ENSAPEG00000007954)	aqp10b (ENSAPEG00000008000)	hax1 (ENSAPEG00000008010) #20	ubap2l (ENSAPEG00000008041) #21	C1orf43 (ENSAPEG00000008101) #22	ENSAPEG00000008142	cgnb (ENSAPEG00000008164)	pygo2 (ENSAPEG00000008185) #8	SHE (ENSAPEG00000008188) #16	s100s (ENSAPEG00000008197)	s100u (ENSAPEG00000008267)	ENSAPEG00000008275	ENSAPEG00000008283	cks1b (ENSAPEG00000008300)	ENSAPEG00000008329	efna1a (ENSAPEG00000008353)	dpm3 (ENSAPEG00000008384)	trim46b (ENSAPEG00000008418)	ENSAPEG00000008465	s100a10a (ENSAPEG00000008476)
Spiny chromis	MODERN SPECIES	2241													aqp10b (ENSAPOG00000004858)	hax1 (ENSAPOG00000004880) #20	ubap2l (ENSAPOG00000004941) #21	C1orf43 (ENSAPOG00000005006) #22	ENSAPOG00000005030
Bicolor damselfish	MODERN SPECIES	565		RPS19 (ENSSPAG00000020396)	ENSSPAG00000020489	ENSSPAG00000021518	ndufv1 (ENSSPAG00000021524)	ENSSPAG00000021562	ENSSPAG00000021599	ENSSPAG00000021609	ENSSPAG00000021632	PIP5K1A (ENSSPAG00000021643)	psmd4a (ENSSPAG00000021684)	znf687b (ENSSPAG00000021707)	aqp10b (ENSSPAG00000021767)	hax1 (ENSSPAG00000021865) #20	ubap2l (ENSSPAG00000021901) #21	C1orf43 (ENSSPAG00000022033) #22	ENSSPAG00000022020	cgnb (ENSSPAG00000022053)	pygo2 (ENSSPAG00000022069) #8	SHE (ENSSPAG00000022073) #16	s100s (ENSSPAG00000022079)	s100u (ENSSPAG00000022082)	ENSSPAG00000022089	ENSSPAG00000022113	cks1b (ENSSPAG00000022127)	ENSSPAG00000022136	efna1a (ENSSPAG00000000030)	dpm3 (ENSSPAG00000000037)
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000178054	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
P. nyererei	MODERN SPECIES	397	ENSPNYG00000009733	ENSPNYG00000009742	RPS19 (ENSPNYG00000009770)	ENSPNYG00000009795	ENSPNYG00000009815	ndufv1 (ENSPNYG00000009841)	ENSPNYG00000009873	ENSPNYG00000009893	PIP5K1A (ENSPNYG00000009908)	psmd4a (ENSPNYG00000009957)	ENSPNYG00000009982	znf687b (ENSPNYG00000010000)	aqp10b (ENSPNYG00000010082)	hax1 (ENSPNYG00000010366) #20	ubap2l (ENSPNYG00000010412) #21	C1orf43 (ENSPNYG00000010519) #22	ENSPNYG00000010562	cgnb (ENSPNYG00000010580)	pygo2 (ENSPNYG00000010614) #8	SHE (ENSPNYG00000010625) #16	s100s (ENSPNYG00000010649)	s100u (ENSPNYG00000010681)	ENSPNYG00000010695	ENSPNYG00000010753	cks1b (ENSPNYG00000010772)	ENSPNYG00000010787	efna1a (ENSPNYG00000010806)	dpm3 (ENSPNYG00000010826)	trim46b (ENSPNYG00000010844)	s100a10a (ENSPNYG00000010880)	ENSPNYG00000010893
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920
Eastern happy	MODERN SPECIES	13	mef2d (ENSACLG00000010423)	ENSACLG00000010415	ENSACLG00000010399	RPS19 (ENSACLG00000010375)	ENSACLG00000010332	ENSACLG00000010328	ndufv1 (ENSACLG00000010319)	ENSACLG00000010317	ENSACLG00000010314	PIP5K1A (ENSACLG00000010283)	psmd4a (ENSACLG00000010267)	znf687b (ENSACLG00000010230)	aqp10b (ENSACLG00000010213)	hax1 (ENSACLG00000010206) #20	ubap2l (ENSACLG00000010119) #21	C1orf43 (ENSACLG00000010093) #22	ENSACLG00000010075	cgnb (ENSACLG00000010046)	pygo2 (ENSACLG00000010034) #8	SHE (ENSACLG00000010028) #16	ENSACLG00000009992	ENSACLG00000009983	efna1a (ENSACLG00000009980)	dpm3 (ENSACLG00000009972)	trim46b (ENSACLG00000009963)	s100a10a (ENSACLG00000009958)	ENSACLG00000009942	ENSACLG00000009936	snx27a (ENSACLG00000009901)	ENSACLG00000009864	chrna11 (ENSACLG00000009856)
Zebra mbuna	MODERN SPECIES	1104	mef2d (ENSMZEG00005026614)	ENSMZEG00005026611	ENSMZEG00005026609	RPS19 (ENSMZEG00005026604)	ENSMZEG00005026602	ENSMZEG00005026600	ndufv1 (ENSMZEG00005026598)	ENSMZEG00005026597	ENSMZEG00005026595	pip5k1aa (ENSMZEG00005026593)	psmd4a (ENSMZEG00005026591)	znf687b (ENSMZEG00005026588)	aqp10b (ENSMZEG00005026582)	hax1 (ENSMZEG00005026578) #20	ubap2l (ENSMZEG00005026572) #21	C1orf43 (ENSMZEG00005026569) #22	ENSMZEG00005026566	cgnb (ENSMZEG00005026565)	pygo2 (ENSMZEG00005026564) #8	SHE (ENSMZEG00005026562) #16	ENSMZEG00005026561	s100s (ENSMZEG00005026559)	s100u (ENSMZEG00005026557)	ENSMZEG00005026555	ENSMZEG00005026551	cks1b (ENSMZEG00005026550)	ENSMZEG00005026548	efna1a (ENSMZEG00005026547)	dpm3 (ENSMZEG00005026545)	trim46b (ENSMZEG00005026543)	s100a10a (ENSMZEG00005026541)
Burton s mouthbrooder	MODERN SPECIES	357	mef2d (ENSHBUG00000021492)	ENSHBUG00000021391	ENSHBUG00000021381	RPS19 (ENSHBUG00000021364)	ENSHBUG00000021336	ENSHBUG00000021231	ndufv1 (ENSHBUG00000021207)	ENSHBUG00000021174	PIP5K1A (ENSHBUG00000021166)	psmd4a (ENSHBUG00000021151)	ENSHBUG00000021090	znf687b (ENSHBUG00000021078)	aqp10b (ENSHBUG00000021063)	hax1 (ENSHBUG00000021052) #20	ubap2l (ENSHBUG00000021037) #21	C1orf43 (ENSHBUG00000001034) #22	ENSHBUG00000020859	cgnb (ENSHBUG00000020841)	pygo2 (ENSHBUG00000020816) #8	SHE (ENSHBUG00000020801) #16	s100s (ENSHBUG00000020793)	s100u (ENSHBUG00000020788)	ENSHBUG00000020785	ENSHBUG00000020772	cks1b (ENSHBUG00000020757)	ENSHBUG00000020740	efna1a (ENSHBUG00000020735)	dpm3 (ENSHBUG00000020711)	trim46b (ENSHBUG00000020692)	s100a10a (ENSHBUG00000020650)	ENSHBUG00000020643
Lyretail cichlid	MODERN SPECIES	302	ENSNBRG00000015530	ENSNBRG00000015538	RPS19 (ENSNBRG00000015559)	ENSNBRG00000015569	ENSNBRG00000015581	ndufv1 (ENSNBRG00000015594)	ENSNBRG00000015606	ENSNBRG00000015628	PIP5K1A (ENSNBRG00000015643)	psmd4a (ENSNBRG00000015701)	ENSNBRG00000015739	znf687b (ENSNBRG00000015762)	aqp10b (ENSNBRG00000015843)	hax1 (ENSNBRG00000016015) #20	ubap2l (ENSNBRG00000016054) #21	C1orf43 (ENSNBRG00000016149) #22	ENSNBRG00000016185	cgnb (ENSNBRG00000016236)	pygo2 (ENSNBRG00000016278) #8	SHE (ENSNBRG00000016283) #16	s100s (ENSNBRG00000016313)	s100u (ENSNBRG00000016377)	ENSNBRG00000016388	ENSNBRG00000016435	cks1b (ENSNBRG00000016502)	ENSNBRG00000016520	efna1a (ENSNBRG00000016557)	dpm3 (ENSNBRG00000016594)	trim46b (ENSNBRG00000016613)	s100a10a (ENSNBRG00000016655)	ENSNBRG00000016739
Nile tilapia	MODERN SPECIES	13	ENSONIG00000019766	ENSONIG00000040681	RPS19 (ENSONIG00000019765)	ENSONIG00000042248	ENSONIG00000019760	ENSONIG00000019758	ndufv1 (ENSONIG00000019756)	ENSONIG00000019755	PIP5K1A (ENSONIG00000019753)	psmd4a (ENSONIG00000019752)	znf687b (ENSONIG00000019751)	ENSONIG00000028636	aqp10b (ENSONIG00000019750)	hax1 (ENSONIG00000019747) #20	ubap2l (ENSONIG00000019743) #21	C1orf43 (ENSONIG00000019739) #22	ENSONIG00000019738	cgnb (ENSONIG00000019737)	pygo2 (ENSONIG00000033754) #8	SHE (ENSONIG00000019733) #16	s100s (ENSONIG00000027404)	s100u (ENSONIG00000019731)	ENSONIG00000032250	ENSONIG00000019730	cks1b (ENSONIG00000027098)	ENSONIG00000032139	efna1a (ENSONIG00000038657)	dpm3 (ENSONIG00000027309)	trim46b (ENSONIG00000019724)	s100a10a (ENSONIG00000031982)	ENSONIG00000028947
Midas cichlid	MODERN SPECIES	329	tmem79a (ENSACIG00000002883)	ENSACIG00000002899	RPS19 (ENSACIG00000002928)	ENSACIG00000002943	ENSACIG00000003020	ndufv1 (ENSACIG00000003043)	ENSACIG00000003224	ENSACIG00000003294	pip5k1aa (ENSACIG00000003302)	psmd4a (ENSACIG00000003403)	ENSACIG00000003431	znf687b (ENSACIG00000003449)	aqp10b (ENSACIG00000003498)	hax1 (ENSACIG00000003544) #20	ubap2l (ENSACIG00000003560) #21	C1orf43 (ENSACIG00000003732) #22	ENSACIG00000003760	cgnb (ENSACIG00000003819)	SHE (ENSACIG00000003908) #16	s100s (ENSACIG00000003938)	ENSACIG00000003994	ENSACIG00000004006	ENSACIG00000004067	cks1b (ENSACIG00000004101)	ENSACIG00000004110	efna1a (ENSACIG00000004128)	dpm3 (ENSACIG00000004146)	trim46b (ENSACIG00000004170)
Cod	MODERN SPECIES	14	ENSGMOG00000029558	ENSGMOG00000002822	dnajc8 (ENSGMOG00000002855)	ENSGMOG00000002879	cers2a (ENSGMOG00000002912)	ENSGMOG00000031313	ENSGMOG00000035576	ENSGMOG00000032572	mrps21 (ENSGMOG00000027109)	ENSGMOG00000032053	znf687b (ENSGMOG00000027293)	aqp10b (ENSGMOG00000010790)	ENSGMOG00000033416	hax1 (ENSGMOG00000010798) #20	ubap2l (ENSGMOG00000010809) #21	C1orf43 (ENSGMOG00000010839) #22	ENSGMOG00000010849	cgnb (ENSGMOG00000010860)	pygo2 (ENSGMOG00000035346) #8	ENSGMOG00000030274 #16	s100s (ENSGMOG00000010913)	ENSGMOG00000036869	ENSGMOG00000030357	ENSGMOG00000024951	cks1b (ENSGMOG00000023116)	ENSGMOG00000010947	efna1a (ENSGMOG00000033783)	dpm3 (ENSGMOG00000020118)	trim46b (ENSGMOG00000010964)	s100a10a (ENSGMOG00000030248)	ENSGMOG00000030600
Protacanthopterygii	ANCESTRAL SPECIES	119	ENSGT00940000165835.b	ENSGT00390000003308.a.b	ENSGT00950000182929.B.b.a	ENSGT00940000162287.D	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a	ENSGT00940000156524.a	ENSGT00940000164368.A	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a #8	ENSGT00940000159107.i #16	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.b.b	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795	ENSGT00440000034367
Salmoninae	ANCESTRAL SPECIES	164							ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a.g	ENSGT00940000156524.a.e	ENSGT00940000165692.b.a.a	ENSGT00940000164368.B.j	ENSGT00390000018324 #20	ENSGT00390000003453.b.b.c #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a.c #8	ENSGT00940000159107.i #16	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b	ENSGT00940000166681.i.b	ENSGT00940000159919.b.d	ENSGT00390000008892	ENSGT00940000158021.c.b	ENSGT00970000197205.A	ENSGT00940000165795.f.b
Huchen	MODERN SPECIES	3422																C1orf43 (ENSHHUG00000003683) #22	ENSHHUG00000003699	cgnb (ENSHHUG00000003708)
Salmoninae_a	ANCESTRAL SPECIES	118							ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a.g	ENSGT00940000156524.a.e	ENSGT00940000165692.b.a.a	ENSGT00940000164368.B.j	ENSGT00390000018324 #20	ENSGT00390000003453.b.b.c #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a.c #8	ENSGT00940000159107.i #16	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b	ENSGT00940000166681.j	ENSGT00940000166681.i.b	ENSGT00940000159919.b.d	ENSGT00390000008892	ENSGT00940000158021.c.b	ENSGT00970000197205.A
Salmo	ANCESTRAL SPECIES	40								ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a.g	ENSGT00940000156524.a.e	ENSGT00940000164368.B.j	ENSGT00390000018324 #20	ENSGT00390000003453.b.b.c #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a.c #8	ENSGT00940000159107.i #16	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b	ENSGT01010000222336.a.a.a.a.a	ENSGT00940000166681.i.a	ENSGT00940000159919.b.c	ENSGT00990000213475	ENSGT00940000158021.c.a	ENSGT00970000197205.B
River trout	MODERN SPECIES	27						ENSSTUG00000040670	ndufv1 (ENSSTUG00000040713)	ENSSTUG00000040878	PIP5K1A (ENSSTUG00000040903)	PSMD4 (ENSSTUG00000041012)	znf687b (ENSSTUG00000041176)	ENSSTUG00000041257	hax1 (ENSSTUG00000041331) #20	ubap2l (ENSSTUG00000041423) #21	ENSSTUG00000041600	C1orf43 (ENSSTUG00000041624) #22	ENSSTUG00000041652	cgnb (ENSSTUG00000041719)	pygo2 (ENSSTUG00000041829) #8	SHE (ENSSTUG00000041838) #16	s100s (ENSSTUG00000041870)	s100u (ENSSTUG00000041887)	ENSSTUG00000041908	ENSSTUG00000041915	ENSSTUG00000041948	ENSSTUG00000042045	ENSSTUG00000042113	efna1a (ENSSTUG00000042118)	ENSSTUG00000042141	trim46b (ENSSTUG00000042165)	ENSSTUG00000042240
Atlantic salmon	MODERN SPECIES	19								ENSSSAG00000058808	ENSSSAG00000063699	PIP5K1A (ENSSSAG00000053881)	ENSSSAG00000092495	ZNF687 (ENSSSAG00000053990)	ENSSSAG00000091322	ubap2l (ENSSSAG00000054215) #21	ENSSSAG00000054342	C1orf43 (ENSSSAG00000109037) #22	cgnb (ENSSSAG00000054367)	pygo2 (ENSSSAG00000089131) #8	she (ENSSSAG00000054412) #16	s100s (ENSSSAG00000111798)	ENSSSAG00000114845	ENSSSAG00000054433	ENSSSAG00000054423	ENSSSAG00000054441	ENSSSAG00000054447	ENSSSAG00000097250	ENSSSAG00000116780	ENSSSAG00000054460	ENSSSAG00000119413	trim46b (ENSSSAG00000054481)	s10a4 (ENSSSAG00000054772)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000157860.j	ENSGT00940000167257.h.b	ENSGT00940000174429	ENSGT01100000263563.c.a.b.e	ENSGT00940000155696.ub.f	ENSGT00940000161407.b.d	ENSGT00940000156564.b.c.a	ENSGT00940000155850.wb.b	ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a.g	ENSGT00940000156524.a.e	ENSGT00390000018324 #20	ENSGT00390000003453.b.b.c #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a.c #8	ENSGT00940000159107.i #16	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b.w.a	ENSGT01010000222336.a.a.a.a.a	ENSGT00940000166681.i.a	ENSGT00940000159919.b.c	ENSGT00990000213475	ENSGT00940000158021.c.a	ENSGT00970000197205.B
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000040764	irs2a (ENSOMYG00000040771)	ENSOMYG00000061719	ENSOMYG00000040793	ENSOMYG00000049358	ENSOMYG00000074434	ankrd10a (ENSOMYG00000058393)	ENSOMYG00000040843	ENSOMYG00000041326	ENSOMYG00000064890	PIP5K1A (ENSOMYG00000041341)	ENSOMYG00000041349	znf687b (ENSOMYG00000041359)	hax1 (ENSOMYG00000041371) #20	ubap2l (ENSOMYG00000041451) #21	C1orf43 (ENSOMYG00000041898) #22	ENSOMYG00000041909	ENSOMYG00000041921	cgnb (ENSOMYG00000041930)	pygo2 (ENSOMYG00000041940) #8	ENSOMYG00000041946 #16	s100s (ENSOMYG00000005922)	s100u (ENSOMYG00000041954)	ENSOMYG00000041959	ENSOMYG00000041962	cks1b (ENSOMYG00000041968)	ENSOMYG00000063155	ENSOMYG00000041977	ENSOMYG00000060014	ENSOMYG00000041983	ENSOMYG00000041987
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000159090.f	ENSGT00390000000292.B.o.b	ENSGT00940000157860.j	ENSGT01100000263563.c.a.b.e	ENSGT00940000155696.ub.f	ENSGT00940000161407.b.d	ENSGT00940000156564.b.c.a	ENSGT00940000155850.wb.b	ENSGT00390000010641.i.b.d	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i	ENSGT00530000064050.a.g	ENSGT00940000156524.a.e	ENSGT00390000018324 #20	ENSGT00390000003453.b.b.c #21	ENSGT00510000047366.b #22	ENSGT00950000183065.B.f	ENSGT00940000154489.B.a	ENSGT00530000063948.a.c #8	ENSGT00940000159107.i #16	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b.w.a	ENSGT01010000222336.a.a.a.a.a	ENSGT00940000166681.i.a	ENSGT00940000159919.b.c	ENSGT00940000158021.c.a	ENSGT00970000197205.B	ENSGT00970000197205.D
Coho salmon	MODERN SPECIES	8	DOCK3 (ENSOKIG00005030656)	ENSOKIG00005030603	ENSOKIG00005030522	DAG1 (ENSOKIG00005030503)	ENSOKIG00005030191	AMIGO3 (ENSOKIG00005030126)	ENSOKIG00005030111	USP11 (ENSOKIG00005023371)	ndufv1 (ENSOKIG00005022193)	ENSOKIG00005022155	PIP5K1A (ENSOKIG00005022071)	PSMD4 (ENSOKIG00005022033)	znf687b (ENSOKIG00005021996)	hax1 (ENSOKIG00005021990) #20	ubap2l (ENSOKIG00005020967) #21	C1orf43 (ENSOKIG00005020903) #22	ENSOKIG00005020846	cgnb (ENSOKIG00005020778)	pygo2 (ENSOKIG00005020772) #8	SHE (ENSOKIG00005020766) #16	s100s (ENSOKIG00005020760)	s100u (ENSOKIG00005020740)	ENSOKIG00005020734	ENSOKIG00005020723	cks1b (ENSOKIG00005020717)	ENSOKIG00005020715	ENSOKIG00005020712	efna1a (ENSOKIG00005020700)	trim46b (ENSOKIG00005020646)	ENSOKIG00005020635	s100a10a (ENSOKIG00005020627)
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005003379	p2rx3b (ENSOTSG00005006755)	ENSOTSG00005006757	cckbra (ENSOTSG00005006771)	NALF1 (ENSOTSG00005006772)	irs2a (ENSOTSG00005006784)	ENSOTSG00005006785	plekha3 (ENSOTSG00005006786)	ndufv1 (ENSOTSG00005006788)	ENSOTSG00005007568	PIP5K1A (ENSOTSG00005007570)	PSMD4 (ENSOTSG00005007806)	znf687b (ENSOTSG00005007817)	hax1 (ENSOTSG00005007819) #20	ubap2l (ENSOTSG00005007829) #21	C1orf43 (ENSOTSG00005009841) #22	ENSOTSG00005009844	cgnb (ENSOTSG00005009848)	pygo2 (ENSOTSG00005009849) #8	SHE (ENSOTSG00005009852) #16	s100s (ENSOTSG00005009853)	s100u (ENSOTSG00005009855)	ENSOTSG00005009857	ENSOTSG00005009858	cks1b (ENSOTSG00005009860)	ENSOTSG00005009862	ENSOTSG00005009864	efna1a (ENSOTSG00005009865)	trim46b (ENSOTSG00005009877)	ENSOTSG00005009878	ENSOTSG00005009879
Northern pike	MODERN SPECIES	9	ENSELUG00000022396	ENSELUG00000034291	ENSELUG00000028551	ENSELUG00000009258	ndufv1 (ENSELUG00000009231)	ENSELUG00000009162	ENSELUG00000031994	ENSELUG00000028553	ENSELUG00000028339	PIP5K1A (ENSELUG00000009097)	ENSELUG00000009051	znf687b (ENSELUG00000008981)	aqp10b (ENSELUG00000008962)	hax1 (ENSELUG00000000338) #20	ubap2l (ENSELUG00000008908) #21	C1orf43 (ENSELUG00000008771) #22	ENSELUG00000008723	cgnb (ENSELUG00000008683)	pygo2 (ENSELUG00000008606) #8	ENSELUG00000008572 #16	s100s (ENSELUG00000030277)	s100u (ENSELUG00000008487)	s100a11 (ENSELUG00000008472)	ENSELUG00000008428	cks1b (ENSELUG00000008403)	ENSELUG00000001706	efna1a (ENSELUG00000033446)	dpm3 (ENSELUG00000001608)	trim46b (ENSELUG00000008327)	s100a10a (ENSELUG00000029139)	ENSELUG00000008197
Otomorpha	ANCESTRAL SPECIES	229																ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00940000166466.f	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00990000204073	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801
Clupeiformes	ANCESTRAL SPECIES	195												ENSGT00940000165521.b.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919.a	ENSGT00390000007801	ENSGT00940000158021.d	ENSGT00390000003552
Atlantic herring	MODERN SPECIES	2	crot (ENSCHAG00000003849)	abcb4 (ENSCHAG00000004048)	rundc3b (ENSCHAG00000006828)	slc25a40 (ENSCHAG00000006910)	dbf4 (ENSCHAG00000006996)	ADAM22 (ENSCHAG00000007136)	cldn12 (ENSCHAG00000012000)	ENSCHAG00000012011	ENSCHAG00000012043	ENSCHAG00000012058	ENSCHAG00000012079	ENSCHAG00000012149	ENSCHAG00000015631	aqp10a (ENSCHAG00000016935)	ENSCHAG00000017581	zgc:123238 (ENSCHAG00000017588) #22	tuft1a (ENSCHAG00000017645)	ENSCHAG00000017667	ENSCHAG00000017678 #16	CHRNB2 (ENSCHAG00000017702) #13	s100t (ENSCHAG00000017754)	SHC1 (ENSCHAG00000017779) #7	lenep (ENSCHAG00000018481)	pbxip1b (ENSCHAG00000018491)	ENSCHAG00000018554	efna3b (ENSCHAG00000018561)	efna1b (ENSCHAG00000018575)	slc50a1 (ENSCHAG00000018581)	TRIM46 (ENSCHAG00000018594)	krtcap2 (ENSCHAG00000018606)	s100a10a (ENSCHAG00000018626)
Denticle herring	MODERN SPECIES	14	pop5 (ENSDCDG00000034253)	ENSDCDG00000034256	ccdc106a (ENSDCDG00000034264)	casp20 (ENSDCDG00000034267)	ENSDCDG00000034269	ENSDCDG00000034272	casp20 (ENSDCDG00000034275)	casp8 (ENSDCDG00000034279)	catip (ENSDCDG00000034282)	pnkd (ENSDCDG00000034287)	tmbim1a (ENSDCDG00000034296)	si:ch73-71c20.5 (ENSDCDG00000034301)	mcm6 (ENSDCDG00000034322)	aqp10a (ENSDCDG00000034418)	ENSDCDG00000034419	zgc:123238 (ENSDCDG00000034420) #22	tuft1a (ENSDCDG00000034421)	ENSDCDG00000034422	SHE (ENSDCDG00000034424) #16	CHRNB2 (ENSDCDG00000034425) #13	s100t (ENSDCDG00000034426)	pbxip1b (ENSDCDG00000034429)	lenep (ENSDCDG00000034430)	SHC1 (ENSDCDG00000034436) #7	flad1 (ENSDCDG00000034470)	ENSDCDG00000034494	ENSDCDG00000034497	efna1b (ENSDCDG00000034499)	slc50a1 (ENSDCDG00000034502)	TRIM46 (ENSDCDG00000034511)	krtcap2 (ENSDCDG00000034524)
Otophysi	ANCESTRAL SPECIES	1	ENSGT00940000158047	ENSGT00940000156904.a.b	ENSGT00940000165779	ENSGT00650000094956	ENSGT00940000159873	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000164374.A.c.b	ENSGT00940000157471.a	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01060000249055	ENSGT00940000166466.f	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00990000204073.b	ENSGT00940000160040.A	ENSGT00940000161355	ENSGT00940000159919.a
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000156904.a.b	ENSGT00940000165779	ENSGT00650000094956	ENSGT00940000159873	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000164374.A.c.b	ENSGT00940000164374.A.d	ENSGT00940000157471.a	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000162698	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01060000249055	ENSGT00940000166466.f	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00990000204073.b	ENSGT00940000162071	ENSGT00940000160040.A
Channel catfish	MODERN SPECIES		znf384b (ENSIPUG00000004803)	si:ch211-154o6.3 (ENSIPUG00000004767)	ENSIPUG00000004747	cops7a (ENSIPUG00000004727)	cldc1 (ENSIPUG00000004712)	trim39 (ENSIPUG00000004681)	setdb1 (ENSIPUG00000004536)	znf687 (ENSIPUG00000004461)	ENSIPUG00000004432	riiad1 (ENSIPUG00000004407)	ENSIPUG00000004362	IL6R (ENSIPUG00000004323)	atp8b2 (ENSIPUG00000004224)	aqp10a (ENSIPUG00000004182)	ENSIPUG00000004145	c1h1orf43 (ENSIPUG00000004083) #22	tuft1a (ENSIPUG00000004029)	cgn (ENSIPUG00000004008)	She (ENSIPUG00000003990) #16	chrnb2 (ENSIPUG00000003964) #13	s100t (ENSIPUG00000003953)	si:ch211-105c13.3 (ENSIPUG00000003941)	ENSIPUG00000003933	pbxip1 (ENSIPUG00000003902)	shc1 (ENSIPUG00000003831) #7	flad1 (ENSIPUG00000003794)	ENSIPUG00000003787	ENSIPUG00000003770	ENSIPUG00000003763	ENSIPUG00000003758	ENSIPUG00000003756
Characiphysae_b	ANCESTRAL SPECIES	15	ENSGT00940000156904.a.b	ENSGT00940000165779	ENSGT00650000094956	ENSGT00940000159873	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000164374.A.c.b	ENSGT00940000164374.A.c.a.a.b	ENSGT00940000157471.a	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000171210	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01060000249055	ENSGT00940000166466.f	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00990000204073.b	ENSGT00940000162071	ENSGT00940000161355
Characoidei	ANCESTRAL SPECIES	28	ENSGT00940000156904.a.b	ENSGT00940000165779	ENSGT00650000094956	ENSGT00940000159873	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000164374.A.c.b	ENSGT00940000164374.A.c.a.a.b	ENSGT00940000157471.a	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000171210	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01060000249055	ENSGT00940000166466.f	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00990000204073.b	ENSGT00940000162071	ENSGT00940000161355
Red-bellied piranha	MODERN SPECIES	80											ENSPNAG00000024241	ENSPNAG00000024314	zgc:113019 (ENSPNAG00000024342)	aqp10a (ENSPNAG00000024398)	ENSPNAG00000006048	zgc:123238 (ENSPNAG00000024458) #22	TBC1D31 (ENSPNAG00000024479)	ENSPNAG00000024505	PRELID3A (ENSPNAG00000024536)	fbxo32 (ENSPNAG00000024586)	KLHL38 (ENSPNAG00000024598)	lratd2b (ENSPNAG00000024628)	ENSPNAG00000024651	hcst (ENSPNAG00000024666)	ENSPNAG00000024689	ENSPNAG00000003839	ENSPNAG00000024722	ENSPNAG00000024733	ENSPNAG00000024741	ENSPNAG00000024777	ENSPNAG00000024807
Mexicana tetra	MODERN SPECIES	2	ENSAMXG00000035014	ENSAMXG00000015059	ENSAMXG00000039066	ENSAMXG00000039621	cops7a (ENSAMXG00000033951)	cldc1 (ENSAMXG00000040325)	trim108 (ENSAMXG00000016153)	ENSAMXG00000030986	setdb1b (ENSAMXG00000016168)	znf687a (ENSAMXG00000016184)	ENSAMXG00000016204	ENSAMXG00000037802	ENSAMXG00000029667	ENSAMXG00000016234	aqp10a (ENSAMXG00000016242)	zgc:123238 (ENSAMXG00000016250) #22	ENSAMXG00000029684	tuft1a (ENSAMXG00000016263)	ENSAMXG00000029172	ENSAMXG00000016282 #16	CHRNB2 (ENSAMXG00000016297) #13	s100t (ENSAMXG00000040936)	si:ch211-105c13.3 (ENSAMXG00000040438)	s100a11 (ENSAMXG00000035272)	ENSAMXG00000016324	pbxip1b (ENSAMXG00000016316)	lenep (ENSAMXG00000031639)	SHC1 (ENSAMXG00000016334) #7	flad1 (ENSAMXG00000036517)	ENSAMXG00000032864	ENSAMXG00000029119
Electric eel	MODERN SPECIES	93	c1s.1 (ENSEEEG00000005356)	ENSEEEG00000005358	rbp5 (ENSEEEG00000005359)	ptpn6 (ENSEEEG00000005368)	CHD4 (ENSEEEG00000005643)	wnt4b (ENSEEEG00000007433)	ENSEEEG00000007445	mlf2 (ENSEEEG00000007593)	rbfox1l (ENSEEEG00000007594)	ENSEEEG00000007596	rps9 (ENSEEEG00000007597)	ENSEEEG00000007602	ENSEEEG00000007603	aqp10a (ENSEEEG00000007606)	ENSEEEG00000007632	zgc:123238 (ENSEEEG00000007634) #22	tuft1a (ENSEEEG00000007636)	lancl2 (ENSEEEG00000007637)	ENSEEEG00000007639	ENSEEEG00000007640	ENSEEEG00000007642	vstm2a (ENSEEEG00000007643)	HECW1 (ENSEEEG00000007644)	ENSEEEG00000007646	stk17a (ENSEEEG00000007648)	impa2 (ENSEEEG00000007652)	PIEZO2 (ENSEEEG00000007658)	napga (ENSEEEG00000007663)	ENSEEEG00000007670	zgc:111976 (ENSEEEG00000007671)	ralaa (ENSEEEG00000007673)
Cyprinoidei	ANCESTRAL SPECIES	13	ENSGT00940000165779	ENSGT00650000094956	ENSGT00940000159873	ENSGT00940000157155	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000167550	ENSGT00940000164374.A.c.b	ENSGT00940000157471.a	ENSGT00940000156524.b	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00510000047366 #22	ENSGT00950000183065.B.e	ENSGT00940000154489.B.b	ENSGT00940000159107.j #16	ENSGT00940000158417.b #13	ENSGT00940000165956	ENSGT01060000249055	ENSGT00940000166466.f.c	ENSGT00730000111747.a	ENSGT00390000002996	ENSGT00950000182870.a.a.b #7	ENSGT00390000007266	ENSGT00990000204073.b	ENSGT00990000204073.a	ENSGT00940000160040.A	ENSGT00940000161355
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	7	ENSGT00940000158047.i	ENSGT00940000156904.a.b.b	ENSGT00940000165779.a	ENSGT00650000094956	ENSGT00940000157155	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.a	ENSGT00940000167550.a	ENSGT00940000164374.A.c.b.d	ENSGT00390000001745.b.b.a.b	ENSGT00940000157471.a.a	ENSGT00940000156524.b.a	ENSGT00390000003062	ENSGT00940000165521.b.e	ENSGT00940000165692.e.b.b	ENSGT00940000156178.B.a.a	ENSGT00510000047366.c #22	ENSGT00950000183065.B.e.e	ENSGT00940000154489.B.b.b	ENSGT00940000159107.j.b #16	ENSGT00940000158417.b.i #13	ENSGT00940000165956.c	ENSGT01060000249055.a.a	ENSGT00940000166466.f.c	ENSGT00730000111747.a.a	ENSGT00390000002996.b	ENSGT00950000182870.a.a.b.o #7	ENSGT00390000007266.e	ENSGT00990000204073.b	ENSGT00990000204073.a	ENSGT00940000160040.A.e.b	ENSGT00940000161355.d
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00940000158047.i	ENSGT00940000156904.a.b.b	ENSGT00940000165779.a	ENSGT00650000094956	ENSGT00940000157155	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.a	ENSGT00940000167550.a	ENSGT00940000164374.A.c.b.d	ENSGT00390000001745.b.b.a.b	ENSGT00940000157471.a.a	ENSGT00940000156524.b.a	ENSGT00940000172009	ENSGT00940000165521.b.e	ENSGT00940000165692.e.b.b	ENSGT00940000156178.B.a.a	ENSGT00510000047366.c #22	ENSGT00950000183065.B.e.e	ENSGT00940000154489.B.b.b	ENSGT00940000159107.j.b #16	ENSGT00940000158417.b.i #13	ENSGT00950000182996.b.a.a.b.d.a.f.b.a.a.a.b.a	ENSGT00940000165956.c	ENSGT01060000249055.a.a	ENSGT00940000166466.f.c	ENSGT00730000111747.a.a	ENSGT00390000002996.a	ENSGT00390000002996.b	ENSGT00950000182870.a.a.b.o #7	ENSGT00390000007266.e	ENSGT00990000204073.b	ENSGT00990000204073.a
Common carp reference	MODERN SPECIES	47	gnl1 (ENSCCRG00000007403)	znf384b (ENSCCRG00000007400)	si:ch211-154o6.3 (ENSCCRG00000070208)	ENSCCRG00000065113	ENSCCRG00000071316	ENSCCRG00000036973	ENSCCRG00000036976	ENSCCRG00000065508	ENSCCRG00000026113	setdb1b (ENSCCRG00000036978)	znf687a (ENSCCRG00000036980)	ENSCCRG00000067303	ENSCCRG00000080243	ENSCCRG00000003439	ENSCCRG00000057021	ENSCCRG00000003388 #22	tuft1a (ENSCCRG00000003362)	ENSCCRG00000003138	ENSCCRG00000003097 #16	ENSCCRG00000003037 #13	ENSCCRG00000078053	s100t (ENSCCRG00000068549)	si:ch211-105c13.3 (ENSCCRG00000002953)	ENSCCRG00000002897	pbxip1b (ENSCCRG00000002796)	ENSCCRG00000069405 #7	flad1 (ENSCCRG00000081765)	ENSCCRG00000059689	ENSCCRG00000066578	efna3b (ENSCCRG00000069632)	efna1b (ENSCCRG00000080718)
Golden-line barbel	MODERN SPECIES	10										ENSSGRG00000039803	ENSSGRG00000039804	ENSSGRG00000039805	ENSSGRG00000039806	aqp10a (ENSSGRG00000039807)	ENSSGRG00000039808	C1orf43 (ENSSGRG00000039809) #22	tuft1a (ENSSGRG00000039812)	ENSSGRG00000039819	ENSSGRG00000039821 #16	CHRNB2 (ENSSGRG00000039823) #13	ENSSGRG00000039829	s100t (ENSSGRG00000039830)	si:ch211-105c13.3 (ENSSGRG00000039832)	ENSSGRG00000039834	pbxip1b (ENSSGRG00000039836)	lenep (ENSSGRG00000039837)	SHC1 (ENSSGRG00000039840) #7	flad1 (ENSSGRG00000039873)	ENSSGRG00000039874	ENSSGRG00000039875	ENSSGRG00000039876
Goldfish	MODERN SPECIES	7	si:ch211-154o6.3 (ENSCARG00000041170)	ENSCARG00000041365	cldc1 (ENSCARG00000041465)	trim108 (ENSCARG00000041497)	ENSCARG00000041536	ENSCARG00000041549	ENSCARG00000041573	setdb1b (ENSCARG00000041612)	znf687a (ENSCARG00000042522)	ENSCARG00000042541	ENSCARG00000042550	ENSCARG00000042621	ENSCARG00000044017	tuft1a (ENSCARG00000044034)	ENSCARG00000044083	C1orf43 (ENSCARG00000044094) #22	ENSCARG00000044138	ENSCARG00000011239	SHE (ENSCARG00000011252) #16	ENSCARG00000011264	CHRNB2 (ENSCARG00000011269) #13	ENSCARG00000011276	s100t (ENSCARG00000011281)	si:ch211-105c13.3 (ENSCARG00000011288)	ENSCARG00000011298	pbxip1b (ENSCARG00000011316)	lenep (ENSCARG00000011324)	SHC1 (ENSCARG00000011336) #7	flad1 (ENSCARG00000011523)	ENSCARG00000011529	ENSCARG00000011536
Cyprininae	ANCESTRAL SPECIES	293	ENSGT00940000159733.o.b.b	ENSGT00940000158047.j	ENSGT00940000156904.a.b.a	ENSGT00940000165779.b	ENSGT00940000159873	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.b	ENSGT00940000167550.b	ENSGT00940000164374.A.c.b.c	ENSGT00390000001745.b.b.a.a.a	ENSGT00940000157471.a.b	ENSGT00940000156524.b.b	ENSGT00950000182957.a.b	ENSGT00940000165521.b.f	ENSGT00940000165692.e.b.a	ENSGT00940000156178.B.a.b	ENSGT00510000047366.d #22	ENSGT00950000183065.B.e.f	ENSGT00940000154489.B.b.a	ENSGT00940000159107.j.a #16	ENSGT00940000158417.b.j #13	ENSGT00940000165956.d	ENSGT00730000111747.a.b	ENSGT00390000002996.a	ENSGT00950000182870.a.a.b.p #7	ENSGT00390000007266.f	ENSGT00940000160040.A.e.a	ENSGT00940000160040.A.f	ENSGT00940000161355.c	ENSGT00940000159919.a.h	ENSGT00390000007801.m	ENSGT00940000158021.d.d
Cyprininae_a	ANCESTRAL SPECIES	36	ENSGT00940000159733.o.b.b	ENSGT00940000158047.j	ENSGT00940000156904.a.b.a	ENSGT00940000165779.b	ENSGT00940000159873	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.b	ENSGT00940000167550.b	ENSGT00940000164374.A.c.b.c	ENSGT00390000001745.b.b.a.a.a	ENSGT00940000157471.a.b	ENSGT00940000156524.b.b	ENSGT00950000182957.a.b	ENSGT00940000165521.b.f	ENSGT00940000165692.e.b.a	ENSGT00940000156178.B.a.b	ENSGT00510000047366.d #22	ENSGT00950000183065.B.e.f	ENSGT00940000154489.B.b.a	ENSGT00940000159107.j.a #16	ENSGT00940000158417.b.j #13	ENSGT00940000165956.d	ENSGT00730000111747.a.b
Golden-line barbel	MODERN SPECIES	39	mdc1 (ENSSGRG00000007806)	ENSSGRG00000007809	ENSSGRG00000007810	flot1b (ENSSGRG00000007837)	ENSSGRG00000008168	gnl1 (ENSSGRG00000008735)	si:ch211-154o6.3 (ENSSGRG00000008754)	cops7a (ENSSGRG00000008758)	cldc1 (ENSSGRG00000008760)	ENSSGRG00000008763	trim108 (ENSSGRG00000008764)	setdb1b (ENSSGRG00000008766)	znf687a (ENSSGRG00000008801)	ENSSGRG00000008805	ENSSGRG00000008808	C1orf43 (ENSSGRG00000008810) #22	tuft1a (ENSSGRG00000008815)	ENSSGRG00000008819	ENSSGRG00000008826 #16	CHRNB2 (ENSSGRG00000008837) #13	s100t (ENSSGRG00000008893)	si:ch211-105c13.3 (ENSSGRG00000008895)	ENSSGRG00000008896	pbxip1b (ENSSGRG00000008898)	lenep (ENSSGRG00000008901)	ENSSGRG00000008902 #7	flad1 (ENSSGRG00000008904)	ENSSGRG00000008906	efna3b (ENSSGRG00000008907)	efna1b (ENSSGRG00000008908)	slc50a1 (ENSSGRG00000008909)
Common carp reference	MODERN SPECIES	2	flot1b (ENSCCRG00000073131)	ENSCCRG00000042970	gnl1 (ENSCCRG00000042972)	znf384b (ENSCCRG00000060746)	si:ch211-154o6.3 (ENSCCRG00000042980)	cops7a (ENSCCRG00000036968)	cldc1 (ENSCCRG00000036972)	trim108 (ENSCCRG00000036975)	ENSCCRG00000064307	setdb1b (ENSCCRG00000003507)	znf687a (ENSCCRG00000003516)	ENSCCRG00000036985	ENSCCRG00000024574	ENSCCRG00000024570	ENSCCRG00000034383	ENSCCRG00000034388 #22	tuft1a (ENSCCRG00000069266)	ENSCCRG00000005345	ENSCCRG00000054329 #16	ENSCCRG00000023815 #13	s100t (ENSCCRG00000071842)	pbxip1b (ENSCCRG00000023797)	ENSCCRG00000077812 #7	flad1 (ENSCCRG00000065201)	ENSCCRG00000070494	efna3b (ENSCCRG00000055040)	efna1b (ENSCCRG00000025968)	slc50a1 (ENSCCRG00000078959)	ENSCCRG00000001567	ENSCCRG00000065327	ENSCCRG00000078344
Goldfish	MODERN SPECIES	35	rab13 (ENSCARG00000014827) #27	rps27.2 (ENSCARG00000014737) ##26	si:ch211-105c13.3 (ENSCARG00000014723)	SHC1 (ENSCARG00000014721) #7	s100t (ENSCARG00000014707)	si:ch211-105c13.3 (ENSCARG00000014695)	pbxip1b (ENSCARG00000014664)	lenep (ENSCARG00000014652)	SHC1 (ENSCARG00000014640) #7	flad1 (ENSCARG00000058349)	ENSCARG00000058345	znf687a (ENSCARG00000058338)	ENSCARG00000058294	ENSCARG00000057150	ENSCARG00000057066	C1orf43 (ENSCARG00000057049) #22	tuft1a (ENSCARG00000057039)	ENSCARG00000056925	ENSCARG00000056883	rbm12bb (ENSCARG00000056876)	SETD2 (ENSCARG00000056535)	ENSCARG00000056471	NBEAL2 (ENSCARG00000052715)	ccdc12 (ENSCARG00000052291)	ENSCARG00000052252	ENSCARG00000052222	ENSCARG00000052211	ENSCARG00000052197	rxrbb (ENSCARG00000051979)	FHOD3 (ENSCARG00000051396)	slc6a19b (ENSCARG00000050684)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	7	ENSDARG00000115550	dicp3.3 (ENSDARG00000087706)	ENSDARG00000087509	ENSDARG00000104422	ENSDARG00000041221	dicp3.1 (ENSDARG00000099674)	setdb1b (ENSDARG00000099021)	znf687a (ENSDARG00000102774)	ENSDARG00000080675	ENSDARG00000095522	il6r (ENSDARG00000104474)	ENSDARG00000101633	ENSDARG00000099216	aqp10a (ENSDARG00000007086)	ENSDARG00000078387	C16H1orf43 (ENSDARG00000055613) #22	tuft1a (ENSDARG00000061242)	ENSDARG00000093248	ENSDARG00000055607	ENSDARG00000095062	ENSDARG00000087956 #16	CHRNB2 (ENSDARG00000017790) #13	s100t (ENSDARG00000055589)	si:ch211-105c13.3 (ENSDARG00000089441)	ENSDARG00000026663	ENSDARG00000070392	pbxip1b (ENSDARG00000011824)	ENSDARG00000110092	lenep (ENSDARG00000095553)	SHC1 (ENSDARG00000075437) #7	flad1 (ENSDARG00000070390)
Zebrafish	MODERN SPECIES	1035																ENSDARG00000116978 #22
Osteoglossiformes	ANCESTRAL SPECIES	62	ENSGT00390000014801 #10	ENSGT00940000154371.a.b	ENSGT00990000209359	ENSGT00390000015721	ENSGT00940000160047	ENSGT00940000167484	ENSGT00390000006215	ENSGT00940000154703.k	ENSGT00940000156524.a.a	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00390000003453.b.b.e #21	ENSGT00510000047366 #22	ENSGT00950000183065.B	ENSGT00940000154489.B.b	ENSGT00940000159107.i.c #16	ENSGT00940000158417.b.k #13	ENSGT00940000165956.a
Asian bonytongue	MODERN SPECIES	9	pmvk (ENSSFOG00015021001) #10	ENSSFOG00015020989	ENSSFOG00015032010	si:dkey-87o1.2 (ENSSFOG00015021017)	them4 (ENSSFOG00015021023)	ENSSFOG00015021030	ENSSFOG00015028465	pip5k1ab (ENSSFOG00015021078)	znf687b (ENSSFOG00015021090)	RIIAD1 (ENSSFOG00015030907)	ENSSFOG00015021105	ENSSFOG00015021129	aqp10a (ENSSFOG00015021163)	ENSSFOG00015021230	ubap2l (ENSSFOG00015021253) #21	zgc:123238 (ENSSFOG00015021301) #22	tuft1a (ENSSFOG00015021323)	ENSSFOG00015021353	SHE (ENSSFOG00015021381) #16	CHRNB2 (ENSSFOG00015021395) #13	s100t (ENSSFOG00015021408)	ENSSFOG00015021411	ENSSFOG00015021416	pbxip1b (ENSSFOG00015021426)	SHC1 (ENSSFOG00015024633) #7	flad1 (ENSSFOG00015021517)	ENSSFOG00015021538	efna3b (ENSSFOG00015029082)	efna1b (ENSSFOG00015024930)	slc50a1 (ENSSFOG00015021595)	TRIM46 (ENSSFOG00015021605)
P. kingsleyae	MODERN SPECIES	393											pcnt (ENSPKIG00000023895)	ENSPKIG00000023836	aqp10a (ENSPKIG00000023799)	ENSPKIG00000023783	ubap2l (ENSPKIG00000023687) #21	zgc:123238 (ENSPKIG00000023636) #22	ENSPKIG00000023587	SHE (ENSPKIG00000023556) #16	CHRNB2 (ENSPKIG00000023534) #13	s100t (ENSPKIG00000023515)	TMEM158 (ENSPKIG00000023501)	lars2 (ENSPKIG00000023485)	LIMD1 (ENSPKIG00000023463)	ENSPKIG00000023129	ENSPKIG00000022972	ENSPKIG00000022959	ENSPKIG00000022929
Reedfish	MODERN SPECIES	408																zgc:123238 (ENSECRG00000014407) #22