Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b	ENSGT00530000063948.a #7	ENSGT00940000162147 #8	ENSGT00390000014801 #9	ENSGT00950000182904.a.a.a #10	ENSGT00940000157243 #12	ENSGT00940000158417.b #11	ENSGT00940000160166 #14	ENSGT00940000159107 #15	ENSGT00940000161919 #16	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.b.a.b.l ##24	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a ##26	ENSGT00940000159989.f #27	ENSGT00950000182891.a.a.b.a.b.b.a #26	ENSGT00940000159989.e ##27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b	ENSGT00530000063948.a #7	ENSGT00940000162147 #8	ENSGT00390000014801 #9	ENSGT00950000182904.a.a.a #10	ENSGT00940000157243 #12	ENSGT00940000158417.b #11	ENSGT00940000160166 #14	ENSGT00940000159107 #15	ENSGT00940000161919 #16	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a ##26	ENSGT00940000159989.f #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Guinea pig	MODERN SPECIES	10	PYGO2 (ENSCPOG00000038298) #7	PBXIP1 (ENSCPOG00000005112) #8	PMVK (ENSCPOG00000006036) #9	KCNN3 (ENSCPOG00000015718) #10	ENSCPOG00000020156 #11	ADAR (ENSCPOG00000005463) #12	ENSCPOG00000013155 #13	UBE2Q1 (ENSCPOG00000001472) #14	SHE (ENSCPOG00000001163) #15	IL6R (ENSCPOG00000033327) #16	ENSCPOG00000037176 #17	ATP8B2 (ENSCPOG00000014022) #18	AQP10 (ENSCPOG00000039313) #19	HAX1 (ENSCPOG00000007307) #20	ENSCPOG00000021439 #21	C1orf43 (ENSCPOG00000006131) #22	CFAP141 (ENSCPOG00000039253) #23	TPM3 (ENSCPOG00000032186) #24	ENSCPOG00000007264 #25	ENSCPOG00000024660 #26	RAB13 (ENSCPOG00000011491) #27	JTB (ENSCPOG00000012906) #28	CREB3L4 (ENSCPOG00000034503) #29	SLC39A1 (ENSCPOG00000039162) #30	CRTC2 (ENSCPOG00000012884) #31	DENND4B (ENSCPOG00000012910) #32	GATAD2B (ENSCPOG00000010326) #33	SLC27A3 (ENSCPOG00000009466) #34	INTS3 (ENSCPOG00000009450) #35	NPR1 (ENSCPOG00000025084) #36	ILF2 (ENSCPOG00000005835) #37
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00950000182971.B.b.c.a.b	ENSGT00950000182870.a.a.b	ENSGT00530000063948.a #7	ENSGT00940000162147 #8	ENSGT00390000014801 #9	ENSGT00950000182904.a.a.a #10	ENSGT00940000157243 #12	ENSGT00940000158417.b #11	ENSGT00940000160166 #14	ENSGT00940000159107 #15	ENSGT00940000161919 #16	ENSGT00940000160804 #18	ENSGT00940000162648 #19	ENSGT00390000018324 #20	ENSGT00390000003453.b.b #21	ENSGT00510000047366 #22	ENSGT00510000048901 #23	ENSGT01030000234542.b.a.a.a.b.b #24	ENSGT00390000009491.c #25	ENSGT00950000182891.a.a.b.a.b.a ##26	ENSGT00940000159989.f #27	ENSGT00390000016136 #28	ENSGT00940000160806 #29	ENSGT00940000157062 #30	ENSGT00390000010652.B #31	ENSGT00940000160472 #32	ENSGT00390000004097.b #33	ENSGT00940000161073 #34	ENSGT00390000014184 #35	ENSGT00940000156223 #36	ENSGT00940000154879 #37
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	252	SHC1 (ENSCLAG00000005022)	PYGO2 (ENSCLAG00000004985) #7	PBXIP1 (ENSCLAG00000004914) #8	PMVK (ENSCLAG00000004787) #9	KCNN3 (ENSCLAG00000004330) #10	ADAR (ENSCLAG00000005402) #12	CHRNB2 (ENSCLAG00000005132) #11	UBE2Q1 (ENSCLAG00000005048) #14	SHE (ENSCLAG00000004987) #15	ENSCLAG00000004750	IL6R (ENSCLAG00000004093) #16	ATP8B2 (ENSCLAG00000003593) #18	AQP10 (ENSCLAG00000004886) #19	ENSCLAG00000004829 #20	UBAP2L (ENSCLAG00000003903) #21	ENSCLAG00000012981 #22	CFAP141 (ENSCLAG00000011799) #23	TPM3 (ENSCLAG00000010440) #24	NUP210L (ENSCLAG00000007281) #25	RPS27 (ENSCLAG00000006809) ##26	RAB13 (ENSCLAG00000006603) #27	JTB (ENSCLAG00000009842) #28	CREB3L4 (ENSCLAG00000008566) #29	SLC39A1 (ENSCLAG00000008243) #30	CRTC2 (ENSCLAG00000007860) #31	DENND4B (ENSCLAG00000005313) #32	GATAD2B (ENSCLAG00000004814) #33	SLC27A3 (ENSCLAG00000004445) #34	INTS3 (ENSCLAG00000003620) #35	NPR1 (ENSCLAG00000004130) #36	SNAPIN (ENSCLAG00000003233)
Long-tailed chinchilla	MODERN SPECIES	58																ENSCLAG00000000055 #22
Degu	DUPLICATION
Degu	MODERN SPECIES	73	CKS1B (ENSODEG00000011374)	SHC1 (ENSODEG00000011945)	PYGO2 (ENSODEG00000012415) #7	PBXIP1 (ENSODEG00000011532) #8	PMVK (ENSODEG00000011395) #9	KCNN3 (ENSODEG00000011444) #10	ADAR (ENSODEG00000011111) #12	CHRNB2 (ENSODEG00000011916) #11	ENSODEG00000020162	UBE2Q1 (ENSODEG00000012607) #14	SHE (ENSODEG00000010544) #15	ATP8B2 (ENSODEG00000010646) #18	ENSODEG00000010731 #20	ENSODEG00000011367 #21	ENSODEG00000012117 #21	ENSODEG00000011467 #22	CFAP141 (ENSODEG00000011475) #23	TPM3 (ENSODEG00000011815) #24	NUP210L (ENSODEG00000011746) #25	ENSODEG00000012394 #26	ENSODEG00000012634 ##27	JTB (ENSODEG00000012805) #28	CREB3L4 (ENSODEG00000013013) #29	SLC39A1 (ENSODEG00000012305) #30	CRTC2 (ENSODEG00000012430) #31	DENND4B (ENSODEG00000013675) #32	ENSODEG00000019967	GATAD2B (ENSODEG00000012298) #33	SLC27A3 (ENSODEG00000012359) #34	INTS3 (ENSODEG00000012581) #35	NPR1 (ENSODEG00000013147) #36
Degu	MODERN SPECIES	84	ENSODEG00000019376	ENSODEG00000008690	ENSODEG00000019255	ENSODEG00000019220	BTD (ENSODEG00000006036)	DNASE1L3 (ENSODEG00000006359)	ENSODEG00000006739	FLNB (ENSODEG00000008526)	SLMAP (ENSODEG00000005798)	ENSODEG00000006496	ENSODEG00000019341	DENND6A (ENSODEG00000005908)	ENSODEG00000006837	PDE12 (ENSODEG00000006268)	ENSODEG00000006477	ENSODEG00000009106 #22	ENSODEG00000009554	ENSODEG00000019205	ENSODEG00000006288	ASB14 (ENSODEG00000005874)	APPL1 (ENSODEG00000005753)	ENSODEG00000008648	ENSODEG00000009148	ENSODEG00000007374	ARHGEF3 (ENSODEG00000007707)	ENSODEG00000007518	ENSODEG00000008069	TASOR (ENSODEG00000006527)	ENSODEG00000007286	CCDC66 (ENSODEG00000010465)	ERC2 (ENSODEG00000006199)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	10	PYGO2 (ENSHGLG00000007163) #7	PBXIP1 (ENSHGLG00000008141) #8	PMVK (ENSHGLG00000009156) #9	KCNN3 (ENSHGLG00000015775) #10	ENSHGLG00000021095	ADAR (ENSHGLG00000017910) #12	CHRNB2 (ENSHGLG00000007150) #11	ENSHGLG00000007304 #14	ENSHGLG00000035218 #15	IL6R (ENSHGLG00000032250) #16	ATP8B2 (ENSHGLG00000018554) #18	AQP10 (ENSHGLG00000018126) #19	ENSHGLG00000018499	HAX1 (ENSHGLG00000018827) #20	UBAP2L (ENSHGLG00000009352) #21	ENSHGLG00000043186 #22	CFAP141 (ENSHGLG00000034346) #23	ENSHGLG00000035415 ##24	ENSHGLG00000010502 #24	NUP210L (ENSHGLG00000039681) #25	RPS27 (ENSHGLG00000007748) ##26	RAB13 (ENSHGLG00000008749) ##27	JTB (ENSHGLG00000040053) #28	CREB3L4 (ENSHGLG00000033275) #29	SLC39A1 (ENSHGLG00000007034) #30	CRTC2 (ENSHGLG00000008041) #31	DENND4B (ENSHGLG00000006184) #32	ENSHGLG00000015467 #33	ENSHGLG00000034978	ENSHGLG00000038740	ENSHGLG00000046497
Naked mole-rat female	MODERN SPECIES	27	HPSE (ENSHGLG00000018930)	HELQ (ENSHGLG00000019137)	ENSHGLG00000036989	ENSHGLG00000036220	ENSHGLG00000037131	Gpat3 (ENSHGLG00000003421)	ENSHGLG00000043322	ENSHGLG00000045281	ENSHGLG00000037327	ENSHGLG00000035706	ENSHGLG00000004204	ENSHGLG00000004589	CDS1 (ENSHGLG00000049384)	WDFY3 (ENSHGLG00000002966)	ENSHGLG00000041678	ENSHGLG00000000796 #22	ENSHGLG00000000768	ENSHGLG00000019846	ENSHGLG00000001024	ENSHGLG00000000901	ENSHGLG00000046052	ENSHGLG00000034553	ENSHGLG00000019806	ENSHGLG00000005605	ENSHGLG00000001145	SLC10A6 (ENSHGLG00000001287)	ENSHGLG00000001308	ENSHGLG00000045541	AFF1 (ENSHGLG00000001384)	ENSHGLG00000008155	ENSHGLG00000032120
Naked mole-rat female	MODERN SPECIES	23	DHX57 (ENSHGLG00000015212)	ENSHGLG00000005484	ARHGEF33 (ENSHGLG00000007085)	SOS1 (ENSHGLG00000008560)	ENSHGLG00000045652	CDKL4 (ENSHGLG00000044538)	MAP4K3 (ENSHGLG00000018638)	ENSHGLG00000037179	ENSHGLG00000038781	ENSHGLG00000051001	ENSHGLG00000019145	ENSHGLG00000046900	ENSHGLG00000042007	ENSHGLG00000015079	ENSHGLG00000015808	ENSHGLG00000044522 #22	ENSHGLG00000038868	ENSHGLG00000046799	ENSHGLG00000039075	ENSHGLG00000007285	ENSHGLG00000009421	COX7A2L (ENSHGLG00000050207)	KCNG3 (ENSHGLG00000050660)	ENSHGLG00000032595	Mta3 (ENSHGLG00000013809)	ENSHGLG00000033761	HAAO (ENSHGLG00000042032)	ZFP36L2 (ENSHGLG00000035572)	THADA (ENSHGLG00000005656)	PLEKHH2 (ENSHGLG00000007771)	ENSHGLG00000012261