Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Muroidea	ANCESTRAL SPECIES	11	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Prairie vole	MODERN SPECIES	352	Zfand3 (ENSMOCG00000008194) #7	ENSMOCG00000000360 #8	Btbd9 (ENSMOCG00000015866) #9	Glo1 (ENSMOCG00000013858) #10	Dnah8 (ENSMOCG00000019275) #11	Glp1r (ENSMOCG00000002444) #12	ENSMOCG00000000831 #13	Abcg1 (ENSMOCG00000001093) #14	Tff3 (ENSMOCG00000016667) #15	Tff2 (ENSMOCG00000015407) #16	Tff1 (ENSMOCG00000009311) #17	Tmprss3 (ENSMOCG00000022532) #18	Ubash3a (ENSMOCG00000005953) #19	Rsph1 (ENSMOCG00000003255) #20	Slc37a1 (ENSMOCG00000013618) #21	Pde9a (ENSMOCG00000012568) #22	Wdr4 (ENSMOCG00000022127) #23	ENSMOCG00000021683 #24	Pknox1 (ENSMOCG00000000944) #25	Cbs (ENSMOCG00000010781) #26	U2af1 (ENSMOCG00000003736) #27	Cryaa (ENSMOCG00000001790) #28	Sik1 (ENSMOCG00000000510) #29	Hsf2bp (ENSMOCG00000006152) #30	Rrp1b (ENSMOCG00000001117) #31	Pdxk (ENSMOCG00000006016) #32	Cstb (ENSMOCG00000022035) #33	Rrp1 (ENSMOCG00000015687) #34	ENSMOCG00000010991 #35	Trappc10 (ENSMOCG00000006082) #36	Pwp2 (ENSMOCG00000003844) #37
Northern American deer mouse	MODERN SPECIES	13	Zfand3 (ENSPEMG00000016125) #7	Btbd9 (ENSPEMG00000016191) #9	Glo1 (ENSPEMG00000027991) #10	Dnah8 (ENSPEMG00000018970) #11	Glp1r (ENSPEMG00000014524) #12	Umodl1 (ENSPEMG00000012432) #13	Abcg1 (ENSPEMG00000017927) #14	Tff3 (ENSPEMG00000015455) #15	ENSPEMG00000030006 #16	ENSPEMG00000015232 #16	Tff1 (ENSPEMG00000010221) #17	Tmprss3 (ENSPEMG00000008185) #18	Ubash3a (ENSPEMG00000008263) #19	Rsph1 (ENSPEMG00000007960) #20	Slc37a1 (ENSPEMG00000012392) #21	Pde9a (ENSPEMG00000023664) #22	Wdr4 (ENSPEMG00000022550) #23	Ndufv3 (ENSPEMG00000022595) #24	Pknox1 (ENSPEMG00000021492) #25	Cbs (ENSPEMG00000021739) #26	U2af1 (ENSPEMG00000021041) #27	ENSPEMG00000027416	Cryaa (ENSPEMG00000021591) #28	Sik1 (ENSPEMG00000024129) #29	Hsf2bp (ENSPEMG00000021638) #30	Rrp1b (ENSPEMG00000022490) #31	ENSPEMG00000023225 #32	ENSPEMG00000030967 #32	Cstb (ENSPEMG00000025261) #33	Rrp1 (ENSPEMG00000018421) #34	Agpat3 (ENSPEMG00000016159) #35
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Chinese hamster chok1gshd	MODERN SPECIES	184	ENSCGRG00001004307	Zfand3 (ENSCGRG00001000713) #7	Btbd9 (ENSCGRG00001012984) #9	Glo1 (ENSCGRG00001013585) #10	Dnah8 (ENSCGRG00001021025) #11	Glp1r (ENSCGRG00001017257) #12	Umodl1 (ENSCGRG00001019253) #13	Abcg1 (ENSCGRG00001020031) #14	Tff3 (ENSCGRG00001022835) #15	Tff2 (ENSCGRG00001002931) #16	Tff1 (ENSCGRG00001003463) #17	Tmprss3 (ENSCGRG00001008239) #18	Ubash3a (ENSCGRG00001017509) #19	Rsph1 (ENSCGRG00001018109) #20	Slc37a1 (ENSCGRG00001019505) #21	Pde9a (ENSCGRG00001020664) #22	Wdr4 (ENSCGRG00001018232) #23	Ndufv3 (ENSCGRG00001019359) #24	Pknox1 (ENSCGRG00001020033) #25	Cbs (ENSCGRG00001021569) #26	ENSCGRG00001003060 #27	Cryaa (ENSCGRG00001013823) #28	Sik1 (ENSCGRG00001015496) #29
Golden Hamster	MODERN SPECIES	641			Btbd9 (ENSMAUG00000009607) #9	ENSMAUG00000019751 #10	Dnah8 (ENSMAUG00000002892) #11	Glp1r (ENSMAUG00000014036) #12	Umodl1 (ENSMAUG00000011519) #13	Abcg1 (ENSMAUG00000010749) #14	Tff3 (ENSMAUG00000015898) #15	Tff2 (ENSMAUG00000013491) #16	Tff1 (ENSMAUG00000020003) #17	Tmprss3 (ENSMAUG00000020969) #18	Ubash3a (ENSMAUG00000019578) #19	Rsph1 (ENSMAUG00000014285) #20	Slc37a1 (ENSMAUG00000021076) #21	Pde9a (ENSMAUG00000001943) #22	Wdr4 (ENSMAUG00000020696) #23	Ndufv3 (ENSMAUG00000020188) #24	Pknox1 (ENSMAUG00000015669) #25	Cbs (ENSMAUG00000020960) #26	U2af1 (ENSMAUG00000020528) #27	Cryaa (ENSMAUG00000017095) #28	Sik1 (ENSMAUG00000018473) #29	Hsf2bp (ENSMAUG00000018607) #30	Rrp1b (ENSMAUG00000021508) #31	Rrp1 (ENSMAUG00000017653) #34	Agpat3 (ENSMAUG00000019017) #35	Trappc10 (ENSMAUG00000021971) #36	Pwp2 (ENSMAUG00000020265) #37	Icosl (ENSMAUG00000019140)	Dnmt3l (ENSMAUG00000019680)
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36
Mus	ANCESTRAL SPECIES	21	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00800000125293	ENSGT00940000160234	ENSGT00940000162086	ENSGT00940000154549.b	ENSGT00530000063777.a.a.b	ENSGT00530000063777.a.a.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00800000125293	ENSGT00940000160234	ENSGT00940000162086	ENSGT00940000154549.b	ENSGT00530000063777.a.a.b	ENSGT00530000063777.a.a.a
Mouse	MODERN SPECIES	8	Mdga1 (ENSMUSG00000043557)	Zfand3 (ENSMUSG00000044477) #7	Btbd9 (ENSMUSG00000062202) #9	Glo1 (ENSMUSG00000024026) #10	Dnah8 (ENSMUSG00000033826) #11	Glp1r (ENSMUSG00000024027) #12	Umodl1 (ENSMUSG00000054134) #13	Abcg1 (ENSMUSG00000024030) #14	Tff3 (ENSMUSG00000024029) #15	Tff2 (ENSMUSG00000024028) #16	Tff1 (ENSMUSG00000024032) #17	Tmprss3 (ENSMUSG00000024034) #18	Ubash3a (ENSMUSG00000042345) #19	Rsph1 (ENSMUSG00000024033) #20	Slc37a1 (ENSMUSG00000024036) #21	Pde9a (ENSMUSG00000041119) #22	Wdr4 (ENSMUSG00000024037) #23	Ndufv3 (ENSMUSG00000024038) #24	Pknox1 (ENSMUSG00000006705) #25	Cbs (ENSMUSG00000024039) #26	U2af1 (ENSMUSG00000061613) #27	Cryaa (ENSMUSG00000024041) #28	Sik1 (ENSMUSG00000024042) #29	Hsf2bp (ENSMUSG00000002076) #30	Rrp1b (ENSMUSG00000058392) #31	Notch3 (ENSMUSG00000038146)	Ephx3 (ENSMUSG00000037577)	Brd4 (ENSMUSG00000024002)	Akap8 (ENSMUSG00000024045)	Akap8l (ENSMUSG00000002625)	Wiz (ENSMUSG00000024050)
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000159201	ENSGT00390000014679 #7	ENSGT00940000158298 #9	ENSGT00390000009312 #10	ENSGT00940000158992 #11	ENSGT00940000161009 #12	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989.t #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00800000125293	ENSGT00940000160234	ENSGT00940000162086	ENSGT00940000154549.b	ENSGT00530000063777.a.a.b	ENSGT00530000063777.a.a.a
spretus	MODERN SPECIES	8	Mdga1 (MGP_SPRETEiJ_G0022266)	Zfand3 (MGP_SPRETEiJ_G0022267) #7	Btbd9 (MGP_SPRETEiJ_G0022268) #9	Glo1 (MGP_SPRETEiJ_G0022269) #10	Dnah8 (MGP_SPRETEiJ_G0022270) #11	Glp1r (MGP_SPRETEiJ_G0022271) #12	Umodl1 (MGP_SPRETEiJ_G0022272) #13	Abcg1 (MGP_SPRETEiJ_G0022273) #14	Tff3 (MGP_SPRETEiJ_G0022274) #15	Tff2 (MGP_SPRETEiJ_G0022275) #16	Tff1 (MGP_SPRETEiJ_G0022276) #17	Tmprss3 (MGP_SPRETEiJ_G0022277) #18	Ubash3a (MGP_SPRETEiJ_G0022278) #19	Rsph1 (MGP_SPRETEiJ_G0022279) #20	Slc37a1 (MGP_SPRETEiJ_G0022280) #21	Pde9a (MGP_SPRETEiJ_G0022281) #22	Wdr4 (MGP_SPRETEiJ_G0022282) #23	Ndufv3 (MGP_SPRETEiJ_G0022283) #24	Pknox1 (MGP_SPRETEiJ_G0022284) #25	Cbs (MGP_SPRETEiJ_G0022285) #26	MGP_SPRETEiJ_G0022286 #27	Cryaa (MGP_SPRETEiJ_G0022287) #28	Sik1 (MGP_SPRETEiJ_G0022288) #29	Hsf2bp (MGP_SPRETEiJ_G0022289) #30	Rrp1b (MGP_SPRETEiJ_G0022290) #31	Notch3 (MGP_SPRETEiJ_G0022291)	Ephx3 (MGP_SPRETEiJ_G0022292)	Brd4 (MGP_SPRETEiJ_G0022293)	Akap8 (MGP_SPRETEiJ_G0022294)	Akap8l (MGP_SPRETEiJ_G0022295)	MGP_SPRETEiJ_G0022296
Steppe mouse	MODERN SPECIES	3360	ENSMSIG00000011093	ENSMSIG00000011104 #10	ENSMSIG00000011157	Dnah8 (ENSMSIG00000011171) #11	Glp1r (ENSMSIG00000011363) #12	Umodl1 (ENSMSIG00000011380) #13	Abcg1 (ENSMSIG00000011546) #14	Tff3 (ENSMSIG00000011620) #15	Tff2 (ENSMSIG00000011628) #16	Tff1 (ENSMSIG00000011643) #17	Tmprss3 (ENSMSIG00000011659) #18	Ubash3a (ENSMSIG00000011709) #19	ENSMSIG00000011724	Rsph1 (ENSMSIG00000011731) #20	Slc37a1 (ENSMSIG00000011757) #21	Pde9a (ENSMSIG00000011826) #22	Wdr4 (ENSMSIG00000011888) #23	Ndufv3 (ENSMSIG00000011906) #24	Pknox1 (ENSMSIG00000011918) #25	Cbs (ENSMSIG00000011935) #26	U2af1 (ENSMSIG00000011991) #27	Cryaa (ENSMSIG00000012047) #28	ENSMSIG00000012078	Sik1 (ENSMSIG00000012092) #29	Hsf2bp (ENSMSIG00000012149) #30	Rrp1b (ENSMSIG00000012198) #31
Ryukyu mouse	MODERN SPECIES	8	Mdga1 (MGP_CAROLIEiJ_G0021352)	Zfand3 (MGP_CAROLIEiJ_G0021353) #7	Btbd9 (MGP_CAROLIEiJ_G0021354) #9	Glo1 (MGP_CAROLIEiJ_G0021355) #10	Dnah8 (MGP_CAROLIEiJ_G0021356) #11	Glp1r (MGP_CAROLIEiJ_G0021357) #12	Umodl1 (MGP_CAROLIEiJ_G0021358) #13	Abcg1 (MGP_CAROLIEiJ_G0021359) #14	Tff3 (MGP_CAROLIEiJ_G0021360) #15	Tff2 (MGP_CAROLIEiJ_G0021361) #16	Tff1 (MGP_CAROLIEiJ_G0021362) #17	Tmprss3 (MGP_CAROLIEiJ_G0021363) #18	Ubash3a (MGP_CAROLIEiJ_G0021364) #19	Rsph1 (MGP_CAROLIEiJ_G0021365) #20	Slc37a1 (MGP_CAROLIEiJ_G0021366) #21	Pde9a (MGP_CAROLIEiJ_G0021367) #22	Wdr4 (MGP_CAROLIEiJ_G0021368) #23	Ndufv3 (MGP_CAROLIEiJ_G0021369) #24	Pknox1 (MGP_CAROLIEiJ_G0021370) #25	Cbs (MGP_CAROLIEiJ_G0021371) #26	U2af1 (MGP_CAROLIEiJ_G0021372) #27	Cryaa (MGP_CAROLIEiJ_G0021373) #28	Sik1 (MGP_CAROLIEiJ_G0021374) #29	MGP_CAROLIEiJ_G0021375 #30	Rrp1b (MGP_CAROLIEiJ_G0021376) #31	Notch3 (MGP_CAROLIEiJ_G0021377)	Ephx3 (MGP_CAROLIEiJ_G0021378)	Brd4 (MGP_CAROLIEiJ_G0021379)	Akap8 (MGP_CAROLIEiJ_G0021380)	Akap8l (MGP_CAROLIEiJ_G0021381)	MGP_CAROLIEiJ_G0021382
Shrew mouse	MODERN SPECIES	13	Mdga1 (MGP_PahariEiJ_G0023671)	Zfand3 (MGP_PahariEiJ_G0023672) #7	Btbd9 (MGP_PahariEiJ_G0023673) #9	Glo1 (MGP_PahariEiJ_G0023674) #10	Dnah8 (MGP_PahariEiJ_G0023675) #11	Glp1r (MGP_PahariEiJ_G0023676) #12	Umodl1 (MGP_PahariEiJ_G0023677) #13	Abcg1 (MGP_PahariEiJ_G0023678) #14	Tff3 (MGP_PahariEiJ_G0023679) #15	Tff2 (MGP_PahariEiJ_G0023680) #16	Tff1 (MGP_PahariEiJ_G0023681) #17	Tmprss3 (MGP_PahariEiJ_G0023682) #18	Ubash3a (MGP_PahariEiJ_G0023683) #19	Rsph1 (MGP_PahariEiJ_G0023684) #20	Slc37a1 (MGP_PahariEiJ_G0023685) #21	Pde9a (MGP_PahariEiJ_G0023686) #22	MGP_PahariEiJ_G0023687	Ndufv3 (MGP_PahariEiJ_G0023688) #24	Pknox1 (MGP_PahariEiJ_G0023689) #25	Cbs (MGP_PahariEiJ_G0023690) #26	U2af1 (MGP_PahariEiJ_G0023691) #27	Cryaa (MGP_PahariEiJ_G0023692) #28	Sik1 (MGP_PahariEiJ_G0023693) #29	MGP_PahariEiJ_G0023694 #30	Rrp1b (MGP_PahariEiJ_G0023695) #31	Ppp1r14c (MGP_PahariEiJ_G0023696)	Iyd (MGP_PahariEiJ_G0023697)	Plekhg1 (MGP_PahariEiJ_G0023698)	Mthfd1l (MGP_PahariEiJ_G0023699)	Akap12 (MGP_PahariEiJ_G0023700)	Zbtb2 (MGP_PahariEiJ_G0023701)
Rat	MODERN SPECIES	12	Mdga1 (ENSRNOG00000000536)	Zfand3 (ENSRNOG00000059659) #7	Btbd9 (ENSRNOG00000000540) #9	Glo1 (ENSRNOG00000000541) #10	Dnah8 (ENSRNOG00000000542) #11	Glp1r (ENSRNOG00000001152) #12	Umodl1 (ENSRNOG00000001157) #13	Abcg1 (ENSRNOG00000001158) #14	Tff3 (ENSRNOG00000001159) #15	Tff2 (ENSRNOG00000001162) #16	Tff1 (ENSRNOG00000001164) #17	Tmprss3 (ENSRNOG00000001165) #18	Ubash3a (ENSRNOG00000001167) #19	Rsph1 (ENSRNOG00000057862) #20	Slc37a1 (ENSRNOG00000001169) #21	Pde9a (ENSRNOG00000001174) #22	Wdr4 (ENSRNOG00000001181) #23	Ndufv3 (ENSRNOG00000001182) #24	Pknox1 (ENSRNOG00000001184) #25	Cbs (ENSRNOG00000029528) #26	U2af1 (ENSRNOG00000045860) #27	Sik1 (ENSRNOG00000001189) #29	Hsf2bp (ENSRNOG00000001193) #30	Rrp1b (ENSRNOG00000001194) #31	RGD1566085 (ENSRNOG00000068407) #32	Pdxk (ENSRNOG00000049937) #32	Cstb (ENSRNOG00000001201) #33	Rrp1 (ENSRNOG00000001203) #34	Gm56820 (ENSRNOG00000062695)	Agpat3 (ENSRNOG00000001205) #35	Trappc10 (ENSRNOG00000023210) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	557		Tmprss2 (ENSNGAG00000006186)	Ripk4 (ENSNGAG00000011212)	Prdm15 (ENSNGAG00000023708)	C2cd2 (ENSNGAG00000021112)	Zbtb21 (ENSNGAG00000022785)	Umodl1 (ENSNGAG00000014854) #13	Abcg1 (ENSNGAG00000023186) #14	Tff3 (ENSNGAG00000023456) #15	Tff2 (ENSNGAG00000018297) #16	Tff1 (ENSNGAG00000000843) #17	Tmprss3 (ENSNGAG00000002127) #18	Ubash3a (ENSNGAG00000019150) #19	Rsph1 (ENSNGAG00000005022) #20	Slc37a1 (ENSNGAG00000022440) #21	Pde9a (ENSNGAG00000014370) #22	Wdr4 (ENSNGAG00000017117) #23	Ndufv3 (ENSNGAG00000011220) #24	Pknox1 (ENSNGAG00000015912) #25	Cbs (ENSNGAG00000011354) #26	U2af1 (ENSNGAG00000021641) #27	Cryaa (ENSNGAG00000024156) #28	Sik1 (ENSNGAG00000015397) #29	Hsf2bp (ENSNGAG00000002647) #30	Rrp1b (ENSNGAG00000021073) #31	Pdxk (ENSNGAG00000011007) #32	Cstb (ENSNGAG00000001985) #33	ENSNGAG00000022344 #34	Agpat3 (ENSNGAG00000023781) #35	ENSNGAG00000020131 #36	Pwp2 (ENSNGAG00000021106) #37
Lesser Egyptian jerboa	MODERN SPECIES	54	ENSJJAG00000023808	Tmprss2 (ENSJJAG00000021090)	Ripk4 (ENSJJAG00000023752)	Prdm15 (ENSJJAG00000016457)	C2cd2 (ENSJJAG00000016581)	Zbtb21 (ENSJJAG00000002063)	Umodl1 (ENSJJAG00000012073) #13	Abcg1 (ENSJJAG00000011288) #14	Tff3 (ENSJJAG00000014849) #15	Tff2 (ENSJJAG00000022987) #16	Tff1 (ENSJJAG00000020776) #17	Tmprss3 (ENSJJAG00000017683) #18	Ubash3a (ENSJJAG00000018947) #19	Rsph1 (ENSJJAG00000023687) #20	Slc37a1 (ENSJJAG00000009176) #21	Pde9a (ENSJJAG00000022814) #22	Wdr4 (ENSJJAG00000016232) #23	ENSJJAG00000012928 #24	ENSJJAG00000022210	Pknox1 (ENSJJAG00000003326) #25	Cbs (ENSJJAG00000019675) #26	U2af1 (ENSJJAG00000000485) #27	Cryaa (ENSJJAG00000008890) #28	Sik1 (ENSJJAG00000021978) #29	Hsf2bp (ENSJJAG00000011558) #30	Rrp1b (ENSJJAG00000021279) #31	Pdxk (ENSJJAG00000016609) #32	ENSJJAG00000019836 #33	Rrp1 (ENSJJAG00000018886) #34	Agpat3 (ENSJJAG00000019770) #35	Lbh (ENSJJAG00000023694)
Kangaroo rat	MODERN SPECIES	422	Tmprss2 (ENSDORG00000003340)	Ripk4 (ENSDORG00000008414)	Prdm15 (ENSDORG00000009748)	C2cd2 (ENSDORG00000000978)	ENSDORG00000028102	Zbtb21 (ENSDORG00000000981)	Umodl1 (ENSDORG00000001772) #13	Abcg1 (ENSDORG00000025745) #14	Tff3 (ENSDORG00000029966) #15	Tff2 (ENSDORG00000003845) #16	Tff1 (ENSDORG00000009227) #17	Tmprss3 (ENSDORG00000009229) #18	ENSDORG00000024014 #19	Rsph1 (ENSDORG00000005155) #20	Slc37a1 (ENSDORG00000010442) #21	Pde9a (ENSDORG00000002149) #22	Wdr4 (ENSDORG00000002150) #23	Pknox1 (ENSDORG00000000207) #25	Cbs (ENSDORG00000000208) #26	U2af1 (ENSDORG00000000211) #27	Cryaa (ENSDORG00000008969) #28	Hsf2bp (ENSDORG00000005493) #30	Rrp1b (ENSDORG00000005496) #31	Pdxk (ENSDORG00000006607) #32	Cstb (ENSDORG00000028860) #33	Rrp1 (ENSDORG00000002104) #34	ENSDORG00000015851	Trappc10 (ENSDORG00000011540) #36	Pwp2 (ENSDORG00000003015) #37	Gatd3a (ENSDORG00000003016)	Dnmt3l (ENSDORG00000027856)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826 #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Marmotini	ANCESTRAL SPECIES	13	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00960000188749	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826.lb #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Marmotini_b	ANCESTRAL SPECIES	30	ENSGT00940000155686	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00960000188749	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00390000003874 #32	ENSGT00940000154826.lb #33	ENSGT00390000011821.b #34	ENSGT00950000182836.b.b.b.a #35	ENSGT00390000003873 #36	ENSGT00550000074981 #37
Squirrel	MODERN SPECIES	100	BACE2 (ENSSTOG00000011669)	MX1 (ENSSTOG00000012846)	FAM3B (ENSSTOG00000006382)	TMPRSS2 (ENSSTOG00000012868)	RIPK4 (ENSSTOG00000020499)	PRDM15 (ENSSTOG00000000262)	C2CD2 (ENSSTOG00000015690)	ZBTB21 (ENSSTOG00000010003)	UMODL1 (ENSSTOG00000027158) #13	ABCG1 (ENSSTOG00000027580) #14	TFF3 (ENSSTOG00000000593) #15	TMPRSS3 (ENSSTOG00000024702) #18	ENSSTOG00000000600 #19	RSPH1 (ENSSTOG00000002331) #20	SLC37A1 (ENSSTOG00000025445) #21	PDE9A (ENSSTOG00000001452) #22	WDR4 (ENSSTOG00000000442) #23	NDUFV3 (ENSSTOG00000000445) #24	PKNOX1 (ENSSTOG00000000447) #25	CBS (ENSSTOG00000024905) #26	U2AF1 (ENSSTOG00000012766) #27	CRYAA (ENSSTOG00000019571) #28	SIK1 (ENSSTOG00000003810) #29	HSF2BP (ENSSTOG00000011783) #30	RRP1B (ENSSTOG00000011790) #31	PDXK (ENSSTOG00000007194) #32	CSTB (ENSSTOG00000025748) #33	RRP1 (ENSSTOG00000011116) #34	AGPAT3 (ENSSTOG00000010466) #35	TRAPPC10 (ENSSTOG00000029008) #36	PWP2 (ENSSTOG00000014194) #37
Arctic ground squirrel	MODERN SPECIES	443											ENSUPAG00010003554	TMPRSS3 (ENSUPAG00010003524) #18	UBASH3A (ENSUPAG00010003505) #19	RSPH1 (ENSUPAG00010003495) #20	SLC37A1 (ENSUPAG00010003472) #21	PDE9A (ENSUPAG00010003388) #22	WDR4 (ENSUPAG00010003363) #23	ENSUPAG00010003358 #24	PKNOX1 (ENSUPAG00010003344) #25	CBS (ENSUPAG00010003327) #26	U2AF1 (ENSUPAG00010003308) #27	CRYAA (ENSUPAG00010003295) #28	SIK1 (ENSUPAG00010003268) #29	HSF2BP (ENSUPAG00010003260) #30	RRP1B (ENSUPAG00010003249) #31	PDXK (ENSUPAG00010003236) #32	ENSUPAG00010003225 #33	RRP1 (ENSUPAG00010003195) #34	AGPAT3 (ENSUPAG00010003091) #35	TRAPPC10 (ENSUPAG00010003060) #36	PWP2 (ENSUPAG00010003026) #37
Alpin marmot	MODERN SPECIES	4	MX1 (ENSMMMG00000004765)	TMPRSS2 (ENSMMMG00000010132)	RIPK4 (ENSMMMG00000010156)	PRDM15 (ENSMMMG00000010191)	C2CD2 (ENSMMMG00000010233)	ENSMMMG00000010266	UMODL1 (ENSMMMG00000010282) #13	ABCG1 (ENSMMMG00000010456) #14	TFF3 (ENSMMMG00000010483) #15	ENSMMMG00000010491	ENSMMMG00000010506	TMPRSS3 (ENSMMMG00000010515) #18	UBASH3A (ENSMMMG00000010550) #19	RSPH1 (ENSMMMG00000010607) #20	SLC37A1 (ENSMMMG00000010809) #21	PDE9A (ENSMMMG00000010894) #22	WDR4 (ENSMMMG00000011036) #23	ENSMMMG00000011055 #24	PKNOX1 (ENSMMMG00000011067) #25	CBS (ENSMMMG00000011087) #26	U2AF1 (ENSMMMG00000011117) #27	CRYAA (ENSMMMG00000011152) #28	SIK1 (ENSMMMG00000011169) #29	HSF2BP (ENSMMMG00000011193) #30	RRP1B (ENSMMMG00000011209) #31	PDXK (ENSMMMG00000011250) #32	ENSMMMG00000011256 #33	RRP1 (ENSMMMG00000011263) #34	ENSMMMG00000011344	AGPAT3 (ENSMMMG00000011363) #35	TRAPPC10 (ENSMMMG00000011441) #36
Eurasian red squirrel	MODERN SPECIES	1	TMPRSS2 (ENSSVLG00005015845)	RIPK4 (ENSSVLG00005015741)	PRDM15 (ENSSVLG00005015213)	C2CD2 (ENSSVLG00005015130)	ZBTB21 (ENSSVLG00005015081)	UMODL1 (ENSSVLG00005014644) #13	ABCG1 (ENSSVLG00005014331) #14	ENSSVLG00005014286 #15	ENSSVLG00005014242 #15	TFF2 (ENSSVLG00005014174) #16	ENSSVLG00005014123 #17	TMPRSS3 (ENSSVLG00005013778) #18	UBASH3A (ENSSVLG00005013444) #19	RSPH1 (ENSSVLG00005013160) #20	SLC37A1 (ENSSVLG00005012892) #21	PDE9A (ENSSVLG00005011481) #22	ENSSVLG00005011248	WDR4 (ENSSVLG00005025158) #23	ENSSVLG00005025141 #24	PKNOX1 (ENSSVLG00005025120) #25	CBS (ENSSVLG00005025055) #26	U2AF1 (ENSSVLG00005024981) #27	CRYAA (ENSSVLG00005024913) #28	ENSSVLG00005024890 #29	ENSSVLG00005024861	HSF2BP (ENSSVLG00005024842) #30	ENSSVLG00005024819 #31	PDXK (ENSSVLG00005024785) #32	CSTB (ENSSVLG00005024758) #33	RRP1 (ENSSVLG00005024724) #34	AGPAT3 (ENSSVLG00005024678) #35
Hystricomorpha	ANCESTRAL SPECIES	60	ENSGT00940000155686.n.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00940000155686.n.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00940000163238	ENSGT00940000160964	ENSGT00940000159847	ENSGT00560000077266.b.m	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000182802.A
Guinea pig	MODERN SPECIES	90	ENSCPOG00000013108	ENSCPOG00000021489	ENSCPOG00000007052	RIPK4 (ENSCPOG00000022900)	PRDM15 (ENSCPOG00000023446)	C2CD2 (ENSCPOG00000002808)	ZBTB21 (ENSCPOG00000019792)	UMODL1 (ENSCPOG00000023566) #13	ABCG1 (ENSCPOG00000015194) #14	ENSCPOG00000006226 #15	TFF2 (ENSCPOG00000012065) #16	TMPRSS3 (ENSCPOG00000012057) #18	UBASH3A (ENSCPOG00000013429) #19	RSPH1 (ENSCPOG00000002266) #20	SLC37A1 (ENSCPOG00000011616) #21	PDE9A (ENSCPOG00000014197) #22	WDR4 (ENSCPOG00000037037) #23	ENSCPOG00000035722 #24	PKNOX1 (ENSCPOG00000039252) #25	CBS (ENSCPOG00000007817) #26	U2AF1 (ENSCPOG00000004893) #27	Cryaa (ENSCPOG00000004350) #28	SIK1 (ENSCPOG00000026214) #29	HSF2BP (ENSCPOG00000002394) #30	RRP1B (ENSCPOG00000002396) #31	ENSCPOG00000004718	B3GALT5 (ENSCPOG00000035318)	SH3BGR (ENSCPOG00000003488)	LCA5L (ENSCPOG00000021836)	GET1 (ENSCPOG00000040238)	HMGN1 (ENSCPOG00000033135)
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00940000155686.n.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975 #13	ENSGT00940000160131 #14	ENSGT00940000162416 #15	ENSGT00940000161334 #16	ENSGT00940000162623 #17	ENSGT00940000158589 #18	ENSGT00940000160841 #19	ENSGT00940000157240 #20	ENSGT00940000159245 #21	ENSGT00940000155587.a.b #22	ENSGT00390000012174 #23	ENSGT00390000012196 #24	ENSGT00940000159505.x #25	ENSGT00510000047027 #26	ENSGT00950000183152.B.c.a #27	ENSGT00940000160159 #28	ENSGT00940000154989 #29	ENSGT00390000008490 #30	ENSGT00390000011821.a #31	ENSGT00940000163238	ENSGT00940000160964	ENSGT00940000159847	ENSGT00560000077266.b.m	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000182802.A
Long-tailed chinchilla	MODERN SPECIES	114	BACE2 (ENSCLAG00000006208)	DSCAM (ENSCLAG00000016317)	PCP4 (ENSCLAG00000012532)	RIPK4 (ENSCLAG00000007447)	PRDM15 (ENSCLAG00000005430)	C2CD2 (ENSCLAG00000007896)	ZBTB21 (ENSCLAG00000006530)	UMODL1 (ENSCLAG00000009892) #13	ABCG1 (ENSCLAG00000013116) #14	TFF3 (ENSCLAG00000013670) #15	TFF2 (ENSCLAG00000014359) #16	TMPRSS3 (ENSCLAG00000006858) #18	UBASH3A (ENSCLAG00000005633) #19	RSPH1 (ENSCLAG00000005001) #20	SLC37A1 (ENSCLAG00000006046) #21	PDE9A (ENSCLAG00000005531) #22	WDR4 (ENSCLAG00000004584) #23	NDUFV3 (ENSCLAG00000010460) #24	PKNOX1 (ENSCLAG00000009292) #25	CBS (ENSCLAG00000012158) #26	U2AF1 (ENSCLAG00000009589) #27	CRYAA (ENSCLAG00000008715) #28	SIK1 (ENSCLAG00000004717) #29	HSF2BP (ENSCLAG00000006525) #30	RRP1B (ENSCLAG00000005622) #31	ENSCLAG00000008829	ENSCLAG00000006218	B3GALT5 (ENSCLAG00000009203)	ENSCLAG00000008933	SH3BGR (ENSCLAG00000008599)	GET1 (ENSCLAG00000005886)
Degu	MODERN SPECIES	86	ENSODEG00000013917	TMPRSS2 (ENSODEG00000013358)	RIPK4 (ENSODEG00000013779)	PRDM15 (ENSODEG00000013112)	C2CD2 (ENSODEG00000014616)	ZBTB21 (ENSODEG00000014325)	UMODL1 (ENSODEG00000012627) #13	ABCG1 (ENSODEG00000012323) #14	TFF3 (ENSODEG00000013636) #15	TFF2 (ENSODEG00000012650) #16	ENSODEG00000014901 #17	TMPRSS3 (ENSODEG00000013031) #18	UBASH3A (ENSODEG00000013424) #19	RSPH1 (ENSODEG00000012910) #20	SLC37A1 (ENSODEG00000013553) #21	PDE9A (ENSODEG00000013816) #22	WDR4 (ENSODEG00000012553) #23	ENSODEG00000012402	ENSODEG00000014099 #24	PKNOX1 (ENSODEG00000012122) #25	CBS (ENSODEG00000012996) #26	U2AF1 (ENSODEG00000014749) #27	CRYAA (ENSODEG00000014166) #28	SIK1 (ENSODEG00000012072) #29	HSF2BP (ENSODEG00000011763) #30	RRP1B (ENSODEG00000013177) #31	ENSODEG00000013785	ENSODEG00000012206	ENSODEG00000013679	SH3BGR (ENSODEG00000013522)	LCA5L (ENSODEG00000012419)
Naked mole-rat female	MODERN SPECIES	11	RIPK4 (ENSHGLG00000011078)	PRDM15 (ENSHGLG00000016972)	C2CD2 (ENSHGLG00000016958)	ZBTB21 (ENSHGLG00000017068)	ENSHGLG00000015409 #13	ENSHGLG00000009228	ENSHGLG00000035485 #14	ENSHGLG00000040957 #14	TFF3 (ENSHGLG00000007574) #15	TFF2 (ENSHGLG00000006500) #16	ENSHGLG00000050421	TMPRSS3 (ENSHGLG00000007911) #18	UBASH3A (ENSHGLG00000036614) #19	RSPH1 (ENSHGLG00000005500) #20	SLC37A1 (ENSHGLG00000008351) #21	PDE9A (ENSHGLG00000019554) #22	WDR4 (ENSHGLG00000017900) #23	ENSHGLG00000035018	NDUFV3 (ENSHGLG00000041826) #24	PKNOX1 (ENSHGLG00000040628) #25	CBS (ENSHGLG00000015848) #26	U2AF1 (ENSHGLG00000009841) #27	CRYAA (ENSHGLG00000009413) #28	SIK1 (ENSHGLG00000013670) #29	HSF2BP (ENSHGLG00000008796) #30	ENSHGLG00000042952	ENSHGLG00000004968 #31	ENSHGLG00000035096	ENSHGLG00000036095	ENSHGLG00000015583	MORC3 (ENSHGLG00000018450)