Percora_a	ANCESTRAL SPECIES	24	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00940000157345.a #7	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00940000157178 #10	ENSGT00940000159352 #11	ENSGT00940000155068.b #12	ENSGT00940000154078.a.b #13	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931	ENSGT00940000161687 #24	ENSGT00940000161674 #25	ENSGT00940000160296 #26	ENSGT00390000017162 #27	ENSGT00940000157176 #28	ENSGT00390000014563.b #29	ENSGT00390000013948.a #30	ENSGT00950000183200.B #31	ENSGT00940000157986 #32	ENSGT00960000190195	ENSGT00940000154115.c.a #34	ENSGT00970000197193 #33	ENSGT00940000160558 #35
Bovidae	ANCESTRAL SPECIES	14	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a.v	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00940000157178 #10	ENSGT00940000159352 #11	ENSGT00940000155068.b #12	ENSGT00940000154078.a.b #13	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931	ENSGT00940000161687 #24	ENSGT00940000161674 #25	ENSGT00940000160296 #26	ENSGT00390000017162 #27	ENSGT00940000157176 #28	ENSGT00390000014563.b #29	ENSGT00390000013948.a #30	ENSGT00950000183200.B #31	ENSGT00940000157986 #32	ENSGT00960000190195	ENSGT00940000154115.c.a #34	ENSGT00970000197193 #33	ENSGT00940000160558 #35
Caprinae	ANCESTRAL SPECIES	14	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a.u.a	ENSGT00940000157345.a #7	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00940000157178 #10	ENSGT00940000159352 #11	ENSGT00940000155068.b #12	ENSGT00940000154078.a.b #13	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931	ENSGT00940000161687 #24	ENSGT00940000161674 #25	ENSGT00940000160296 #26	ENSGT00390000017162 #27	ENSGT00940000157176 #28	ENSGT00390000014563.b #29	ENSGT00390000013948.a #30	ENSGT00950000183200.B #31	ENSGT00940000157986 #32	ENSGT00940000154115.c.a #34	ENSGT00940000160558 #35	ENSGT00940000160418 #36	ENSGT00390000000531 #37
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020000666 #7	ENSOARG00020000635 #8	ENSOARG00020000588 #9	LPL (ENSOARG00020000574) #10	SLC18A1 (ENSOARG00020000239) #11	ATP6V1B2 (ENSOARG00020000155) #12	LZTS1 (ENSOARG00020000131) #13	ENSOARG00020000094 #14	ENSOARG00020023808 #15	ENSOARG00020023803 #16	GFRA2 (ENSOARG00020023673) #17	DOK2 (ENSOARG00020023652) #18	XPO7 (ENSOARG00020023445) #19	ENSOARG00020023411 #20	FGF17 (ENSOARG00020023369) #21	DMTN (ENSOARG00020022707) #22	FHIP2B (ENSOARG00020022611) #23	HR (ENSOARG00020022176) #24	REEP4 (ENSOARG00020022055) #25	LGI3 (ENSOARG00020021936) #26	SFTPC (ENSOARG00020021857) #27	BMP1 (ENSOARG00020021570) #28	PHYHIP (ENSOARG00020021526) #29	POLR3D (ENSOARG00020021425) #30	PIWIL2 (ENSOARG00020021105) #31	SLC39A14 (ENSOARG00020020996) #32	ENSOARG00020020965 #33	PPP3CC (ENSOARG00020020737) #34	SORBS3 (ENSOARG00020020583) #35	PDLIM2 (ENSOARG00020020511) #36	C8orf58 (ENSOARG00020020420) #37
Goat	MODERN SPECIES	27	ENSCHIG00000015109	ENSCHIG00000008314	ENSCHIG00000023371	ENSCHIG00000017968 #9	LPL (ENSCHIG00000025623) #10	SLC18A1 (ENSCHIG00000021575) #11	ATP6V1B2 (ENSCHIG00000016793) #12	LZTS1 (ENSCHIG00000022362) #13	ENSCHIG00000025219	GFRA2 (ENSCHIG00000016374) #17	ENSCHIG00000025910	DOK2 (ENSCHIG00000021822) #18	XPO7 (ENSCHIG00000016714) #19	NPM2 (ENSCHIG00000026056) #20	FGF17 (ENSCHIG00000026068) #21	DMTN (ENSCHIG00000019052) #22	FHIP2B (ENSCHIG00000020971) #23	NUDT18 (ENSCHIG00000025564)	HR (ENSCHIG00000024758) #24	REEP4 (ENSCHIG00000025331) #25	LGI3 (ENSCHIG00000025450) #26	SFTPC (ENSCHIG00000018635) #27	BMP1 (ENSCHIG00000023198) #28	PHYHIP (ENSCHIG00000011107) #29	POLR3D (ENSCHIG00000012279) #30	PIWIL2 (ENSCHIG00000022958) #31	SLC39A14 (ENSCHIG00000023885) #32	PPP3CC (ENSCHIG00000014803) #34	SORBS3 (ENSCHIG00000003972) #35	PDLIM2 (ENSCHIG00000013684) #36	CCAR2 (ENSCHIG00000007510)
Bovinae	ANCESTRAL SPECIES	14	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a.u.a	ENSGT00940000157345.a #7	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00940000157178 #10	ENSGT00940000159352 #11	ENSGT00940000155068.b #12	ENSGT00940000154078.a.b #13	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931	ENSGT00940000161687 #24	ENSGT00940000161674 #25	ENSGT00940000160296 #26	ENSGT00390000017162 #27	ENSGT00940000157176 #28	ENSGT00390000014563.b #29	ENSGT00390000013948.a #30	ENSGT00950000183200.B #31	ENSGT00940000157986 #32	ENSGT00960000190195	ENSGT00940000154115.c.a #34	ENSGT00970000197193 #33	ENSGT00940000160558 #35
Bos	ANCESTRAL SPECIES	10	ENSGT00940000157688	ENSGT00950000182992.a.a.u.a	ENSGT00940000157345.a #7	ENSGT00390000005569.x.a.a.b.c.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00940000157178 #10	ENSGT00940000159352 #11	ENSGT00940000155068.b #12	ENSGT00940000154078.a.b #13	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931	ENSGT00940000161687 #24	ENSGT00940000161674 #25	ENSGT00940000160296 #26	ENSGT00390000017162 #27	ENSGT00940000157176 #28	ENSGT00390000014563.b #29	ENSGT00390000013948.a #30	ENSGT00950000183200.B #31	ENSGT00940000157986 #32	ENSGT00960000190195	ENSGT00940000154115.c.a #34	ENSGT00970000197193 #33	ENSGT00940000160558 #35
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000157345.a.b #7	ENSGT00950000182992.a.a.u.b	ENSGT00390000005569.x.a.a.b.c.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00940000157178 #10	ENSGT00390000018141.i.a.b.b.b.a.b.a.b.a.b.b.b.b	ENSGT00940000159352 #11	ENSGT00940000155068.b #12	ENSGT00940000154078.a.b #13	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931	ENSGT00940000161687 #24	ENSGT00940000161674 #25	ENSGT00940000160296 #26	ENSGT00390000017162 #27	ENSGT00940000157176 #28	ENSGT00390000014563.b #29	ENSGT00390000013948.a #30	ENSGT00950000183200.B #31	ENSGT00940000157986 #32	ENSGT00940000154115.c.a #34	ENSGT00970000197193 #33	ENSGT00940000160558 #35	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.a.b.a.b
Hybrid Bos Indicus	MODERN SPECIES	27	LPL (ENSBIXG00005028031) #10	ENSBIXG00005027982	SLC18A1 (ENSBIXG00005027964) #11	ATP6V1B2 (ENSBIXG00005027918) #12	LZTS1 (ENSBIXG00005027830) #13	ENSBIXG00005027774	ENSBIXG00005027763 #14	ENSBIXG00005027749	ENSBIXG00005027723	ENSBIXG00005004760	GFRA2 (ENSBIXG00005027647) #17	DOK2 (ENSBIXG00005004736) #18	XPO7 (ENSBIXG00005027512) #19	NPM2 (ENSBIXG00005027463) #20	FGF17 (ENSBIXG00005027428) #21	DMTN (ENSBIXG00005027387) #22	FHIP2B (ENSBIXG00005004662) #23	NUDT18 (ENSBIXG00005027121)	HR (ENSBIXG00005027087) #24	REEP4 (ENSBIXG00005027035) #25	LGI3 (ENSBIXG00005004632) #26	SFTPC (ENSBIXG00005004620) #27	BMP1 (ENSBIXG00005026935) #28	PHYHIP (ENSBIXG00005026873) #29	POLR3D (ENSBIXG00005026850) #30	PIWIL2 (ENSBIXG00005026814) #31	SLC39A14 (ENSBIXG00005026763) #32	ENSBIXG00005026647	PPP3CC (ENSBIXG00005007253) #34	ENSBIXG00005026595 #33	SORBS3 (ENSBIXG00005007094) #35
Cow	MODERN SPECIES	27	ENSBTAG00000035709 #7	ENSBTAG00000050097	ENSBTAG00000047647	CNTNAP3 (ENSBTAG00000006446)	ENSBTAG00000055232 #9	LPL (ENSBTAG00000012855) #10	ENSBTAG00000050508	SLC18A1 (ENSBTAG00000020788) #11	ATP6V1B2 (ENSBTAG00000018646) #12	LZTS1 (ENSBTAG00000000841) #13	GFRA2 (ENSBTAG00000020665) #17	DOK2 (ENSBTAG00000003341) #18	XPO7 (ENSBTAG00000047628) #19	NPM2 (ENSBTAG00000046918) #20	FGF17 (ENSBTAG00000046951) #21	DMTN (ENSBTAG00000045887) #22	FHIP2B (ENSBTAG00000014361) #23	NUDT18 (ENSBTAG00000003483)	HR (ENSBTAG00000012036) #24	REEP4 (ENSBTAG00000009504) #25	LGI3 (ENSBTAG00000004578) #26	SFTPC (ENSBTAG00000012560) #27	BMP1 (ENSBTAG00000000917) #28	PHYHIP (ENSBTAG00000015757) #29	POLR3D (ENSBTAG00000010036) #30	PIWIL2 (ENSBTAG00000015835) #31	SLC39A14 (ENSBTAG00000019225) #32	PPP3CC (ENSBTAG00000020133) #34	ENSBTAG00000052118 #33	SORBS3 (ENSBTAG00000014401) #35	ENSBTAG00000054318
Bos_a	ANCESTRAL SPECIES	20				ENSGT00390000005569.x.a.a.b.c.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00940000157178 #10	ENSGT00940000159352 #11	ENSGT00940000155068.b #12	ENSGT00940000154078.a.b #13	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931	ENSGT00940000161687 #24	ENSGT00940000161674 #25	ENSGT00940000160296 #26	ENSGT00390000017162 #27	ENSGT00940000157176 #28	ENSGT00390000014563.b #29	ENSGT00390000013948.a #30	ENSGT00950000183200.B #31	ENSGT00940000157986 #32	ENSGT00960000190195	ENSGT00940000154115.c.a #34	ENSGT00940000160558 #35	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.a.b.a.b
Domestic yak	MODERN SPECIES	26	ENSBGRG00000005772	ENSBGRG00000005789	ENSBGRG00000005820 #9	ENSBGRG00000005839 #9	LPL (ENSBGRG00000005883) #10	SLC18A1 (ENSBGRG00000005970) #11	ATP6V1B2 (ENSBGRG00000006044) #12	LZTS1 (ENSBGRG00000006103) #13	ENSBGRG00000006145	GFRA2 (ENSBGRG00000006183) #17	ENSBGRG00000006448	DOK2 (ENSBGRG00000006461) #18	ENSBGRG00000006491	XPO7 (ENSBGRG00000006557) #19	ENSBGRG00000007546 #20	DMTN (ENSBGRG00000007906) #22	FHIP2B (ENSBGRG00000008409) #23	NUDT18 (ENSBGRG00000008644)	HR (ENSBGRG00000008707) #24	ENSBGRG00000009214 #25	LGI3 (ENSBGRG00000009374) #26	SFTPC (ENSBGRG00000009528) #27	BMP1 (ENSBGRG00000009629) #28	PHYHIP (ENSBGRG00000009872) #29	POLR3D (ENSBGRG00000009942) #30	PIWIL2 (ENSBGRG00000010031) #31	SLC39A14 (ENSBGRG00000010379) #32	ENSBGRG00000010491	ENSBGRG00000010503	PPP3CC (ENSBGRG00000010542) #34	SORBS3 (ENSBGRG00000011774) #35
Wild yak	MODERN SPECIES	711										ENSBMUG00000012963	GFRA2 (ENSBMUG00000013030) #17	DOK2 (ENSBMUG00000013060) #18	XPO7 (ENSBMUG00000013112) #19	ENSBMUG00000013150 #20	FGF17 (ENSBMUG00000013164) #21	DMTN (ENSBMUG00000013290) #22	FHIP2B (ENSBMUG00000013336) #23	NUDT18 (ENSBMUG00000013352)	HR (ENSBMUG00000013431) #24	REEP4 (ENSBMUG00000013469) #25	LGI3 (ENSBMUG00000013504) #26	SFTPC (ENSBMUG00000013531) #27	BMP1 (ENSBMUG00000013561) #28	PHYHIP (ENSBMUG00000013577) #29	POLR3D (ENSBMUG00000013605) #30	PIWIL2 (ENSBMUG00000013694) #31	SLC39A14 (ENSBMUG00000013789) #32	ENSBMUG00000013801	PPP3CC (ENSBMUG00000013849) #34	ENSBMUG00000013918 #35	PDLIM2 (ENSBMUG00000013940) #36
American bison	MODERN SPECIES	3134			ENSBBBG00000003726	ENSBBBG00000003722	ENSBBBG00000014986 #9	LPL (ENSBBBG00000014982) #10	SLC18A1 (ENSBBBG00000014957) #11	ATP6V1B2 (ENSBBBG00000000816) #12	LZTS1 (ENSBBBG00000000835) #13	ENSBBBG00000000857	GFRA2 (ENSBBBG00000000874) #17	DOK2 (ENSBBBG00000000963) #18	XPO7 (ENSBBBG00000000984) #19	ENSBBBG00000001063 #20	FGF17 (ENSBBBG00000001081) #21	DMTN (ENSBBBG00000001134) #22	ENSBBBG00000014717 #23	NUDT18 (ENSBBBG00000003572)	HR (ENSBBBG00000014703) #24	REEP4 (ENSBBBG00000014642) #25	LGI3 (ENSBBBG00000014605) #26	SFTPC (ENSBBBG00000014583) #27	BMP1 (ENSBBBG00000007131) #28	PHYHIP (ENSBBBG00000003417) #29	POLR3D (ENSBBBG00000003413) #30	PIWIL2 (ENSBBBG00000014530) #31	SLC39A14 (ENSBBBG00000014435) #32	ENSBBBG00000003310	PPP3CC (ENSBBBG00000003305) #34	SORBS3 (ENSBBBG00000014322) #35	PDLIM2 (ENSBBBG00000014228) #36
Siberian musk deer	MODERN SPECIES	327												DOK2 (ENSMMSG00000010558) #18	XPO7 (ENSMMSG00000010600) #19	ENSMMSG00000010856 #20	FGF17 (ENSMMSG00000010894) #21	DMTN (ENSMMSG00000010959) #22	FHIP2B (ENSMMSG00000011217) #23	NUDT18 (ENSMMSG00000011330)	HR (ENSMMSG00000011355) #24	REEP4 (ENSMMSG00000011428) #25	LGI3 (ENSMMSG00000011515) #26	SFTPC (ENSMMSG00000011604) #27	BMP1 (ENSMMSG00000011656) #28	PHYHIP (ENSMMSG00000011733) #29	ENSMMSG00000011764 #30	PIWIL2 (ENSMMSG00000011843) #31	ENSMMSG00000012076	SLC39A14 (ENSMMSG00000012106) #32	ENSMMSG00000012176	PPP3CC (ENSMMSG00000012197) #34	ENSMMSG00000012271 #33