Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00390000012054.b.ib ##7	ENSGT00940000156591 #8	ENSGT00680000101436	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #24	ENSGT00940000161687 #25	ENSGT00940000161674 #26	ENSGT00940000160296 #27	ENSGT00390000017162 #28	ENSGT00940000157176 #29	ENSGT00390000014563.b #30	ENSGT00390000013948.a #31	ENSGT00950000183200.B #32	ENSGT00940000157986 #33	ENSGT00940000154115.c.a #34	ENSGT00940000160558 #35	ENSGT00940000160418 #36	ENSGT00390000000531 #37
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00390000012054.b.hb.a ##7	ENSGT00390000012054.b.hb.b #7	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #24	ENSGT00940000161687 #25	ENSGT00940000161674 #26	ENSGT00940000160296 #27	ENSGT00390000017162 #28	ENSGT00940000157176 #29	ENSGT00390000014563.b #30	ENSGT00390000013948.a #31	ENSGT00950000183200.B #32	ENSGT00940000157986 #33	ENSGT00940000154115.c.a #34	ENSGT00940000160558 #35	ENSGT00940000160418 #36	ENSGT00390000000531 #37
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00390000012054.b.hb.a ##7	ENSGT00390000012054.b.hb.b #7	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #24	ENSGT00940000161687 #25	ENSGT00940000161674 #26	ENSGT00940000160296 #27	ENSGT00390000017162 #28	ENSGT00940000157176 #29	ENSGT00390000014563.b #30	ENSGT00390000013948.a #31	ENSGT00950000183200.B #32	ENSGT00940000157986 #33	ENSGT00940000154115.c.a #34	ENSGT00940000160558 #35	ENSGT00940000160418 #36	ENSGT00390000000531 #37
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000013815 #7	PSD3 (ENSCLAG00000013610) #8	ENSCLAG00000013492 #9	SH2D4A (ENSCLAG00000014633) #10	CSGALNACT1 (ENSCLAG00000015214) #11	INTS10 (ENSCLAG00000012932) #12	LPL (ENSCLAG00000014046) #13	SLC18A1 (ENSCLAG00000014695) #14	ATP6V1B2 (ENSCLAG00000014575) #15	LZTS1 (ENSCLAG00000015813) #16	GFRA2 (ENSCLAG00000013860) #17	DOK2 (ENSCLAG00000013076) #18	XPO7 (ENSCLAG00000012121) #19	NPM2 (ENSCLAG00000013600) #20	FGF17 (ENSCLAG00000014705) #21	DMTN (ENSCLAG00000015647) #22	FHIP2B (ENSCLAG00000017275) #23	ENSCLAG00000012239 #24	HR (ENSCLAG00000013490) #25	REEP4 (ENSCLAG00000013685) #26	LGI3 (ENSCLAG00000014697) #27	SFTPC (ENSCLAG00000017002) #28	BMP1 (ENSCLAG00000015290) #29	PHYHIP (ENSCLAG00000014506) #30	POLR3D (ENSCLAG00000014993) #31	PIWIL2 (ENSCLAG00000013810) #32	SLC39A14 (ENSCLAG00000012809) #33	PPP3CC (ENSCLAG00000015203) #34	SORBS3 (ENSCLAG00000014309) #35	ENSCLAG00000014272 #36	C8orf58 (ENSCLAG00000014186) #37
Degu	MODERN SPECIES	77	ENSODEG00000019170 ##7	ENSODEG00000005985 #8	ENSODEG00000006062 #8	SH2D4A (ENSODEG00000006278) #10	CSGALNACT1 (ENSODEG00000005728) #11	INTS10 (ENSODEG00000006587) #12	LPL (ENSODEG00000006165) #13	SLC18A1 (ENSODEG00000005261) #14	ENSODEG00000005521 #15	LZTS1 (ENSODEG00000007484) #16	GFRA2 (ENSODEG00000005386) #17	ENSODEG00000005626 #18	XPO7 (ENSODEG00000007208) #19	NPM2 (ENSODEG00000006433) #20	FGF17 (ENSODEG00000005311) #21	DMTN (ENSODEG00000005818) #22	FHIP2B (ENSODEG00000008184) #23	NUDT18 (ENSODEG00000007621) #24	HR (ENSODEG00000005767) #25	REEP4 (ENSODEG00000006662) #26	LGI3 (ENSODEG00000006726) #27	SFTPC (ENSODEG00000007026) #28	BMP1 (ENSODEG00000007288) #29	PHYHIP (ENSODEG00000006421) #30	POLR3D (ENSODEG00000005884) #31	PIWIL2 (ENSODEG00000009752) #32	ENSODEG00000019353	SLC39A14 (ENSODEG00000006438) #33	PPP3CC (ENSODEG00000006004) #34	SORBS3 (ENSODEG00000007179) #35	PDLIM2 (ENSODEG00000006028) #36
Guinea pig	MODERN SPECIES	1	PSD3 (ENSCPOG00000002659) #8	ENSCPOG00000037424	SH2D4A (ENSCPOG00000005255) #10	ENSCPOG00000030817	CSGALNACT1 (ENSCPOG00000005259) #11	INTS10 (ENSCPOG00000011817) #12	LPL (ENSCPOG00000004054) #13	SLC18A1 (ENSCPOG00000001743) #14	ATP6V1B2 (ENSCPOG00000001749) #15	LZTS1 (ENSCPOG00000034547) #16	GFRA2 (ENSCPOG00000027454) #17	DOK2 (ENSCPOG00000001726) #18	XPO7 (ENSCPOG00000004506) #19	NPM2 (ENSCPOG00000039799) #20	FGF17 (ENSCPOG00000014655) #21	DMTN (ENSCPOG00000006214) #22	FHIP2B (ENSCPOG00000003287) #23	NUDT18 (ENSCPOG00000030205) #24	HR (ENSCPOG00000003292) #25	REEP4 (ENSCPOG00000003298) #26	LGI3 (ENSCPOG00000037841) #27	SFTPC (ENSCPOG00000021731) #28	BMP1 (ENSCPOG00000019973) #29	PHYHIP (ENSCPOG00000037333) #30	POLR3D (ENSCPOG00000003679) #31	PIWIL2 (ENSCPOG00000001108) #32	SLC39A14 (ENSCPOG00000001112) #33	PPP3CC (ENSCPOG00000001113) #34	SORBS3 (ENSCPOG00000001115) #35	ENSCPOG00000020871 #36	C8orf58 (ENSCPOG00000039428) #37
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000039432 #8	ENSHGLG00000005452 #8	ENSHGLG00000010280	SH2D4A (ENSHGLG00000017844) #10	CSGALNACT1 (ENSHGLG00000016296) #11	INTS10 (ENSHGLG00000015823) #12	LPL (ENSHGLG00000005162) #13	SLC18A1 (ENSHGLG00000007001) #14	ATP6V1B2 (ENSHGLG00000007965) #15	ENSHGLG00000048578	GFRA2 (ENSHGLG00000015954) #17	DOK2 (ENSHGLG00000015292) #18	XPO7 (ENSHGLG00000008763) #19	NPM2 (ENSHGLG00000006243) #20	FGF17 (ENSHGLG00000007312) #21	DMTN (ENSHGLG00000007946) #22	FHIP2B (ENSHGLG00000012251) #23	NUDT18 (ENSHGLG00000009076) #24	HR (ENSHGLG00000013891) #25	REEP4 (ENSHGLG00000016443) #26	LGI3 (ENSHGLG00000032024) #27	SFTPC (ENSHGLG00000013617) #28	BMP1 (ENSHGLG00000013962) #29	PHYHIP (ENSHGLG00000043593) #30	POLR3D (ENSHGLG00000015415) #31	PIWIL2 (ENSHGLG00000015853) #32	SLC39A14 (ENSHGLG00000009516) #33	PPP3CC (ENSHGLG00000010001) #34	SORBS3 (ENSHGLG00000014875) #35	PDLIM2 (ENSHGLG00000007806) #36	ENSHGLG00000010238 #37