Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b #22
Euteleostomi	ANCESTRAL SPECIES	318						ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000164095	ENSGT00940000159672	ENSGT00940000161756	ENSGT00940000158698	ENSGT00530000063555.B	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25
Sarcopterygii	ANCESTRAL SPECIES	72										ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000154078.a.b #16	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00950000182850.a.b.b #22	ENSGT00950000183067.a.b.b	ENSGT00940000159040	ENSGT00940000158754	ENSGT00720000108851	ENSGT00940000161953	ENSGT00390000015483	ENSGT00940000158766	ENSGT00390000006729	ENSGT00940000153232.a.a	ENSGT00940000158418	ENSGT00940000157814	ENSGT00940000155535	ENSGT00950000183192.b	ENSGT00940000155642	ENSGT00940000156651
Tetrapoda	ANCESTRAL SPECIES	124									ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00530000063672.b	ENSGT00950000182882.B	ENSGT00940000160355
Amniota	ANCESTRAL SPECIES	33	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00530000063672.b
Mammalia	ANCESTRAL SPECIES	27	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Theria	ANCESTRAL SPECIES	38	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00680000101436 #9	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Euarchontoglires	ANCESTRAL SPECIES	24	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Euarchontoglires_A	ANCESTRAL SPECIES	25	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Glires	ANCESTRAL SPECIES	26	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Rodentia	ANCESTRAL SPECIES	21	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Marmotini	ANCESTRAL SPECIES	30	ENSGT00390000012054.b.jb #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986.j ##34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Alpin marmot	MODERN SPECIES	61	ENSMMMG00000018320 #7	ENSMMMG00000018272 #8	ENSMMMG00000018256 #9	SH2D4A (ENSMMMG00000018235) #10	CSGALNACT1 (ENSMMMG00000018218) #11	INTS10 (ENSMMMG00000018091) #12	LPL (ENSMMMG00000018057) #13	SLC18A1 (ENSMMMG00000018050) #14	ATP6V1B2 (ENSMMMG00000018032) #15	LZTS1 (ENSMMMG00000018023) #16	GFRA2 (ENSMMMG00000018003) #17	DOK2 (ENSMMMG00000017998) #18	XPO7 (ENSMMMG00000017808) #19	NPM2 (ENSMMMG00000017801) #20	FGF17 (ENSMMMG00000017798) #21	DMTN (ENSMMMG00000017508) #22	FHIP2B (ENSMMMG00000017499) #23	ENSMMMG00000017497 #24	NUDT18 (ENSMMMG00000017482) #25	HR (ENSMMMG00000017436) #26	REEP4 (ENSMMMG00000017428) #27	LGI3 (ENSMMMG00000017411) #28	SFTPC (ENSMMMG00000017400) #29	BMP1 (ENSMMMG00000016498) #30	PHYHIP (ENSMMMG00000016482) #31	POLR3D (ENSMMMG00000016471) #32	PIWIL2 (ENSMMMG00000016458) #33	ENSMMMG00000016424 #34	PPP3CC (ENSMMMG00000014284) #35	SORBS3 (ENSMMMG00000014188) #36	PDLIM2 (ENSMMMG00000014169) #37
Marmotini_b	ANCESTRAL SPECIES	87	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00390000014557.p	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986.j ##34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Squirrel	MODERN SPECIES	155	PSD3 (ENSSTOG00000000985) #8	ENSSTOG00000020963 #9	SH2D4A (ENSSTOG00000022701) #10	CSGALNACT1 (ENSSTOG00000025203) #11	INTS10 (ENSSTOG00000001464) #12	LPL (ENSSTOG00000001477) #13	ENSSTOG00000033131	SLC18A1 (ENSSTOG00000011464) #14	ATP6V1B2 (ENSSTOG00000022596) #15	LZTS1 (ENSSTOG00000025467) #16	GFRA2 (ENSSTOG00000026519) #17	DOK2 (ENSSTOG00000021120) #18	XPO7 (ENSSTOG00000013611) #19	NPM2 (ENSSTOG00000013623) #20	FGF17 (ENSSTOG00000013628) #21	DMTN (ENSSTOG00000027524) #22	FHIP2B (ENSSTOG00000015235) #23	NUDT18 (ENSSTOG00000029142) #25	HR (ENSSTOG00000016512) #26	REEP4 (ENSSTOG00000016513) #27	LGI3 (ENSSTOG00000016514) #28	SFTPC (ENSSTOG00000016515) #29	BMP1 (ENSSTOG00000016516) #30	PHYHIP (ENSSTOG00000016517) #31	POLR3D (ENSSTOG00000016519) #32	PIWIL2 (ENSSTOG00000016520) #33	ENSSTOG00000030172 ##34	PPP3CC (ENSSTOG00000028936) #35	SORBS3 (ENSSTOG00000011660) #36	PDLIM2 (ENSSTOG00000024161) #37	C8orf58 (ENSSTOG00000021866)
Arctic ground squirrel	MODERN SPECIES	186								SLC18A1 (ENSUPAG00010018578) #14	ATP6V1B2 (ENSUPAG00010018554) #15	LZTS1 (ENSUPAG00010018548) #16	GFRA2 (ENSUPAG00010018514) #17	DOK2 (ENSUPAG00010018499) #18	XPO7 (ENSUPAG00010018440) #19	NPM2 (ENSUPAG00010018414) #20	FGF17 (ENSUPAG00010018399) #21	DMTN (ENSUPAG00010017971) #22	FHIP2B (ENSUPAG00010017910) #23	NUDT18 (ENSUPAG00010017905) #25	ENSUPAG00010017898 #24	HR (ENSUPAG00010017864) #26	REEP4 (ENSUPAG00010017856) #27	LGI3 (ENSUPAG00010017847) #28	SFTPC (ENSUPAG00010017841) #29	BMP1 (ENSUPAG00010017803) #30	PHYHIP (ENSUPAG00010017796) #31	POLR3D (ENSUPAG00010017779) #32	PIWIL2 (ENSUPAG00010017766) #33	SLC39A14 (ENSUPAG00010017726) ##34	PPP3CC (ENSUPAG00010017686) #35	SORBS3 (ENSUPAG00010017635) #36	PDLIM2 (ENSUPAG00010017621) #37
Eurasian red squirrel	MODERN SPECIES	14	PSD3 (ENSSVLG00005006930) #8	ENSSVLG00005006863	ENSSVLG00005006854 #9	SH2D4A (ENSSVLG00005006765) #10	CSGALNACT1 (ENSSVLG00005006697) #11	INTS10 (ENSSVLG00005006649) #12	LPL (ENSSVLG00005006464) #13	SLC18A1 (ENSSVLG00005006162) #14	ATP6V1B2 (ENSSVLG00005006065) #15	LZTS1 (ENSSVLG00005005986) #16	GFRA2 (ENSSVLG00005005872) #17	DOK2 (ENSSVLG00005005819) #18	XPO7 (ENSSVLG00005005524) #19	NPM2 (ENSSVLG00005005355) #20	FGF17 (ENSSVLG00005005293) #21	DMTN (ENSSVLG00005005156) #22	FHIP2B (ENSSVLG00005005055) #23	NUDT18 (ENSSVLG00005005035) #25	HR (ENSSVLG00005005002) #26	REEP4 (ENSSVLG00005004964) #27	LGI3 (ENSSVLG00005004897) #28	SFTPC (ENSSVLG00005004845) #29	BMP1 (ENSSVLG00005004715) #30	PHYHIP (ENSSVLG00005004677) #31	POLR3D (ENSSVLG00005004650) #32	PIWIL2 (ENSSVLG00005004539) #33	SLC39A14 (ENSSVLG00005004424) #34	ENSSVLG00005004276 #35	SORBS3 (ENSSVLG00005004211) #36	PDLIM2 (ENSSVLG00005004159) #37	C8orf58 (ENSSVLG00005004115)
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00390000012054.b.ib #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000039432 #8	ENSHGLG00000005452 #8	ENSHGLG00000010280 #9	SH2D4A (ENSHGLG00000017844) #10	CSGALNACT1 (ENSHGLG00000016296) #11	INTS10 (ENSHGLG00000015823) #12	LPL (ENSHGLG00000005162) #13	SLC18A1 (ENSHGLG00000007001) #14	ATP6V1B2 (ENSHGLG00000007965) #15	ENSHGLG00000048578	GFRA2 (ENSHGLG00000015954) #17	DOK2 (ENSHGLG00000015292) #18	XPO7 (ENSHGLG00000008763) #19	NPM2 (ENSHGLG00000006243) #20	FGF17 (ENSHGLG00000007312) #21	DMTN (ENSHGLG00000007946) #22	FHIP2B (ENSHGLG00000012251) #23	NUDT18 (ENSHGLG00000009076) #25	HR (ENSHGLG00000013891) #26	REEP4 (ENSHGLG00000016443) #27	LGI3 (ENSHGLG00000032024) #28	SFTPC (ENSHGLG00000013617) #29	BMP1 (ENSHGLG00000013962) #30	PHYHIP (ENSHGLG00000043593) #31	POLR3D (ENSHGLG00000015415) #32	PIWIL2 (ENSHGLG00000015853) #33	SLC39A14 (ENSHGLG00000009516) #34	PPP3CC (ENSHGLG00000010001) #35	SORBS3 (ENSHGLG00000014875) #36	PDLIM2 (ENSHGLG00000007806) #37	ENSHGLG00000010238
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00390000012054.b.hb.a #7	ENSGT00390000012054.b.hb.b #7	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Guinea pig	MODERN SPECIES	1	PSD3 (ENSCPOG00000002659) #8	ENSCPOG00000037424	SH2D4A (ENSCPOG00000005255) #10	ENSCPOG00000030817	CSGALNACT1 (ENSCPOG00000005259) #11	INTS10 (ENSCPOG00000011817) #12	LPL (ENSCPOG00000004054) #13	SLC18A1 (ENSCPOG00000001743) #14	ATP6V1B2 (ENSCPOG00000001749) #15	LZTS1 (ENSCPOG00000034547) #16	GFRA2 (ENSCPOG00000027454) #17	DOK2 (ENSCPOG00000001726) #18	XPO7 (ENSCPOG00000004506) #19	NPM2 (ENSCPOG00000039799) #20	FGF17 (ENSCPOG00000014655) #21	DMTN (ENSCPOG00000006214) #22	FHIP2B (ENSCPOG00000003287) #23	NUDT18 (ENSCPOG00000030205) #25	HR (ENSCPOG00000003292) #26	REEP4 (ENSCPOG00000003298) #27	LGI3 (ENSCPOG00000037841) #28	SFTPC (ENSCPOG00000021731) #29	BMP1 (ENSCPOG00000019973) #30	PHYHIP (ENSCPOG00000037333) #31	POLR3D (ENSCPOG00000003679) #32	PIWIL2 (ENSCPOG00000001108) #33	SLC39A14 (ENSCPOG00000001112) #34	PPP3CC (ENSCPOG00000001113) #35	SORBS3 (ENSCPOG00000001115) #36	ENSCPOG00000020871 #37	C8orf58 (ENSCPOG00000039428)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00390000012054.b.hb.a #7	ENSGT00390000012054.b.hb.b #7	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Degu	MODERN SPECIES	77	ENSODEG00000019170 #7	ENSODEG00000005985 #8	ENSODEG00000006062 #8	SH2D4A (ENSODEG00000006278) #10	CSGALNACT1 (ENSODEG00000005728) #11	INTS10 (ENSODEG00000006587) #12	LPL (ENSODEG00000006165) #13	SLC18A1 (ENSODEG00000005261) #14	ENSODEG00000005521 #15	LZTS1 (ENSODEG00000007484) #16	GFRA2 (ENSODEG00000005386) #17	ENSODEG00000005626 #18	XPO7 (ENSODEG00000007208) #19	NPM2 (ENSODEG00000006433) #20	FGF17 (ENSODEG00000005311) #21	DMTN (ENSODEG00000005818) #22	FHIP2B (ENSODEG00000008184) #23	NUDT18 (ENSODEG00000007621) #25	HR (ENSODEG00000005767) #26	REEP4 (ENSODEG00000006662) #27	LGI3 (ENSODEG00000006726) #28	SFTPC (ENSODEG00000007026) #29	BMP1 (ENSODEG00000007288) #30	PHYHIP (ENSODEG00000006421) #31	POLR3D (ENSODEG00000005884) #32	PIWIL2 (ENSODEG00000009752) #33	ENSODEG00000019353	SLC39A14 (ENSODEG00000006438) #34	PPP3CC (ENSODEG00000006004) #35	SORBS3 (ENSODEG00000007179) #36	PDLIM2 (ENSODEG00000006028) #37
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000013815 #7	PSD3 (ENSCLAG00000013610) #8	ENSCLAG00000013492	SH2D4A (ENSCLAG00000014633) #10	CSGALNACT1 (ENSCLAG00000015214) #11	INTS10 (ENSCLAG00000012932) #12	LPL (ENSCLAG00000014046) #13	SLC18A1 (ENSCLAG00000014695) #14	ATP6V1B2 (ENSCLAG00000014575) #15	LZTS1 (ENSCLAG00000015813) #16	GFRA2 (ENSCLAG00000013860) #17	DOK2 (ENSCLAG00000013076) #18	XPO7 (ENSCLAG00000012121) #19	NPM2 (ENSCLAG00000013600) #20	FGF17 (ENSCLAG00000014705) #21	DMTN (ENSCLAG00000015647) #22	FHIP2B (ENSCLAG00000017275) #23	ENSCLAG00000012239 #25	HR (ENSCLAG00000013490) #26	REEP4 (ENSCLAG00000013685) #27	LGI3 (ENSCLAG00000014697) #28	SFTPC (ENSCLAG00000017002) #29	BMP1 (ENSCLAG00000015290) #30	PHYHIP (ENSCLAG00000014506) #31	POLR3D (ENSCLAG00000014993) #32	PIWIL2 (ENSCLAG00000013810) #33	SLC39A14 (ENSCLAG00000012809) #34	PPP3CC (ENSCLAG00000015203) #35	SORBS3 (ENSCLAG00000014309) #36	ENSCLAG00000014272 #37	C8orf58 (ENSCLAG00000014186)
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Kangaroo rat	MODERN SPECIES	506											Gfra2 (ENSDORG00000007215) #17	Dok2 (ENSDORG00000025791) #18	Xpo7 (ENSDORG00000006392) #19	Npm2 (ENSDORG00000012371) #20	Fgf17 (ENSDORG00000012368) #21	Dmtn (ENSDORG00000011886) #22	Fhip2b (ENSDORG00000011891) #23	Hr (ENSDORG00000011896) #26	Reep4 (ENSDORG00000011899) #27	Lgi3 (ENSDORG00000024991) #28	Sftpc (ENSDORG00000011167) #29	Bmp1 (ENSDORG00000011170) #30	Phyhip (ENSDORG00000011173) #31	Polr3d (ENSDORG00000011174) #32	Piwil2 (ENSDORG00000011177) #33	Slc39a14 (ENSDORG00000002085) #34	Ppp3cc (ENSDORG00000002086) #35	Sorbs3 (ENSDORG00000002089) #36	ENSDORG00000002868 #37	9930012K11Rik (ENSDORG00000000932)	Ccar2 (ENSDORG00000000934)
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Lesser Egyptian jerboa	MODERN SPECIES	175	ENSJJAG00000003908 #8	ENSJJAG00000003186 #9	Sh2d4a (ENSJJAG00000000762) #10	Csgalnact1 (ENSJJAG00000000445) #11	ENSJJAG00000000254 #12	Lpl (ENSJJAG00000000185) #13	Slc18a1 (ENSJJAG00000021529) #14	Atp6v1b2 (ENSJJAG00000021082) #15	Lzts1 (ENSJJAG00000020779) #16	ENSJJAG00000020613	Gfra2 (ENSJJAG00000020584) #17	ENSJJAG00000020434 #18	Xpo7 (ENSJJAG00000019391) #19	Npm2 (ENSJJAG00000018214) #20	Fgf17 (ENSJJAG00000017972) #21	Dmtn (ENSJJAG00000017477) #22	Fhip2b (ENSJJAG00000016855) #23	Nudt18 (ENSJJAG00000013459) #25	Hr (ENSJJAG00000012325) #26	Reep4 (ENSJJAG00000011531) #27	Lgi3 (ENSJJAG00000011324) #28	Sftpc (ENSJJAG00000010997) #29	Bmp1 (ENSJJAG00000009986) #30	Phyhip (ENSJJAG00000007411) #31	Polr3d (ENSJJAG00000006743) #32	Piwil2 (ENSJJAG00000005065) #33	Slc39a14 (ENSJJAG00000001303) #34
Muroidea	ANCESTRAL SPECIES	26	ENSGT00390000012054.b.ob #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT01100000263536.B.c.a	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Murinae	ANCESTRAL SPECIES	16	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT00990000203619.B	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Mus	ANCESTRAL SPECIES	8	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT00990000203619.B	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Mus_A	ANCESTRAL SPECIES	12	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT00990000203619.B	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Mus_B	ANCESTRAL SPECIES	11	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT00990000203619.B	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Mouse	MODERN SPECIES	5	Sucla2 (ENSMUSG00000022110)	Nudt15 (ENSMUSG00000033405)	Med4 (ENSMUSG00000022109)	Itm2b (ENSMUSG00000022108)	Lpar6 (ENSMUSG00000033446)	Rb1 (ENSMUSG00000022105)	Rcbtb2 (ENSMUSG00000022106)	Cysltr2 (ENSMUSG00000033470)	Fndc3a (ENSMUSG00000033487)	Gm9195 (ENSMUSG00000109446)	Gfra2 (ENSMUSG00000022103) #17	Dok2 (ENSMUSG00000022102) #18	Xpo7 (ENSMUSG00000022100) #19	Npm2 (ENSMUSG00000047911) #20	Fgf17 (ENSMUSG00000022101) #21	Dmtn (ENSMUSG00000022099) #22	Fhip2b (ENSMUSG00000022095) #23	Nudt18 (ENSMUSG00000045211) #25	Hr (ENSMUSG00000022096) #26	Reep4 (ENSMUSG00000033589) #27	Lgi3 (ENSMUSG00000033595) #28	Sftpc (ENSMUSG00000022097) #29	Bmp1 (ENSMUSG00000022098) #30	Phyhip (ENSMUSG00000003469) #31	Polr3d (ENSMUSG00000000776) #32	Piwil2 (ENSMUSG00000033644) #33	Slc39a14 (ENSMUSG00000022094) #34	Ppp3cc (ENSMUSG00000022092) #35	Sorbs3 (ENSMUSG00000022091) #36	Pdlim2 (ENSMUSG00000022090) #37	9930012K11Rik (ENSMUSG00000044551)
Mus_C	ANCESTRAL SPECIES	20	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT00990000203619.B	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Steppe mouse	MODERN SPECIES	3225						Cysltr2 (ENSMSIG00000031090)	Fndc3a (ENSMSIG00000031095)	Gm9195 (ENSMSIG00000031103)	ENSMSIG00000031119	Gfra2 (ENSMSIG00000031121) #17	Dok2 (ENSMSIG00000031124) #18	Xpo7 (ENSMSIG00000031126) #19	ENSMSIG00000031135	Npm2 (ENSMSIG00000031136) #20	Fgf17 (ENSMSIG00000031138) #21	Dmtn (ENSMSIG00000031142) #22	Fhip2b (ENSMSIG00000031168) #23	Nudt18 (ENSMSIG00000031175) #25	Hr (ENSMSIG00000031176) #26	ENSMSIG00000031180 #27	Lgi3 (ENSMSIG00000031184) #28	Sftpc (ENSMSIG00000031189) #29
spretus	MODERN SPECIES	5	MGP_SPRETEiJ_G0020397	Med4 (MGP_SPRETEiJ_G0020396)	Itm2b (MGP_SPRETEiJ_G0020395)	Lpar6 (MGP_SPRETEiJ_G0020394)	Rb1 (MGP_SPRETEiJ_G0020393)	Rcbtb2 (MGP_SPRETEiJ_G0020392)	Cysltr2 (MGP_SPRETEiJ_G0020391)	MGP_SPRETEiJ_G0020390	MGP_SPRETEiJ_G0020389	Fndc3a (MGP_SPRETEiJ_G0020388)	Gfra2 (MGP_SPRETEiJ_G0020387) #17	Dok2 (MGP_SPRETEiJ_G0020386) #18	Xpo7 (MGP_SPRETEiJ_G0020385) #19	Npm2 (MGP_SPRETEiJ_G0020384) #20	Fgf17 (MGP_SPRETEiJ_G0020383) #21	Dmtn (MGP_SPRETEiJ_G0020382) #22	Fhip2b (MGP_SPRETEiJ_G0020381) #23	Nudt18 (MGP_SPRETEiJ_G0020380) #25	Hr (MGP_SPRETEiJ_G0020379) #26	Reep4 (MGP_SPRETEiJ_G0020378) #27	Lgi3 (MGP_SPRETEiJ_G0020377) #28	Sftpc (MGP_SPRETEiJ_G0020376) #29	Bmp1 (MGP_SPRETEiJ_G0020375) #30	Phyhip (MGP_SPRETEiJ_G0020374) #31	Polr3d (MGP_SPRETEiJ_G0020373) #32	Piwil2 (MGP_SPRETEiJ_G0020372) #33	Slc39a14 (MGP_SPRETEiJ_G0020371) #34	Ppp3cc (MGP_SPRETEiJ_G0020370) #35	Sorbs3 (MGP_SPRETEiJ_G0020369) #36	Pdlim2 (MGP_SPRETEiJ_G0020368) #37	9930012K11Rik (MGP_SPRETEiJ_G0020367)
Ryukyu mouse	MODERN SPECIES	5	Htr2a (MGP_CAROLIEiJ_G0019505)	Sucla2 (MGP_CAROLIEiJ_G0019504)	Nudt15 (MGP_CAROLIEiJ_G0019503)	Med4 (MGP_CAROLIEiJ_G0019502)	Itm2b (MGP_CAROLIEiJ_G0019501)	Lpar6 (MGP_CAROLIEiJ_G0019500)	Rb1 (MGP_CAROLIEiJ_G0019499)	Rcbtb2 (MGP_CAROLIEiJ_G0019498)	Cysltr2 (MGP_CAROLIEiJ_G0019497)	Fndc3a (MGP_CAROLIEiJ_G0019496)	Gfra2 (MGP_CAROLIEiJ_G0019495) #17	Dok2 (MGP_CAROLIEiJ_G0019494) #18	Xpo7 (MGP_CAROLIEiJ_G0019493) #19	Npm2 (MGP_CAROLIEiJ_G0019492) #20	Fgf17 (MGP_CAROLIEiJ_G0019491) #21	Dmtn (MGP_CAROLIEiJ_G0019490) #22	Fhip2b (MGP_CAROLIEiJ_G0019489) #23	Nudt18 (MGP_CAROLIEiJ_G0019488) #25	Hr (MGP_CAROLIEiJ_G0019487) #26	Reep4 (MGP_CAROLIEiJ_G0019486) #27	Lgi3 (MGP_CAROLIEiJ_G0019485) #28	Sftpc (MGP_CAROLIEiJ_G0019484) #29	Bmp1 (MGP_CAROLIEiJ_G0019483) #30	Phyhip (MGP_CAROLIEiJ_G0019482) #31	Polr3d (MGP_CAROLIEiJ_G0019481) #32	Piwil2 (MGP_CAROLIEiJ_G0019480) #33	Slc39a14 (MGP_CAROLIEiJ_G0019479) #34	Ppp3cc (MGP_CAROLIEiJ_G0019478) #35	Sorbs3 (MGP_CAROLIEiJ_G0019477) #36	Pdlim2 (MGP_CAROLIEiJ_G0019476) #37	9930012K11Rik (MGP_CAROLIEiJ_G0019475)
Shrew mouse	MODERN SPECIES	21	Sucla2 (MGP_PahariEiJ_G0030522)	MGP_PahariEiJ_G0030521	MGP_PahariEiJ_G0030520	Med4 (MGP_PahariEiJ_G0030519)	Itm2b (MGP_PahariEiJ_G0030518)	Lpar6 (MGP_PahariEiJ_G0030517)	Rb1 (MGP_PahariEiJ_G0030516)	Rcbtb2 (MGP_PahariEiJ_G0030515)	Cysltr2 (MGP_PahariEiJ_G0030514)	Fndc3a (MGP_PahariEiJ_G0030513)	Gfra2 (MGP_PahariEiJ_G0030512) #17	Dok2 (MGP_PahariEiJ_G0030511) #18	Xpo7 (MGP_PahariEiJ_G0030510) #19	Npm2 (MGP_PahariEiJ_G0030509) #20	Fgf17 (MGP_PahariEiJ_G0030508) #21	Dmtn (MGP_PahariEiJ_G0030507) #22	Fhip2b (MGP_PahariEiJ_G0030506) #23	Nudt18 (MGP_PahariEiJ_G0030505) #25	Hr (MGP_PahariEiJ_G0030504) #26	Reep4 (MGP_PahariEiJ_G0030503) #27	Lgi3 (MGP_PahariEiJ_G0030502) #28	Sftpc (MGP_PahariEiJ_G0030501) #29	Bmp1 (MGP_PahariEiJ_G0030500) #30	Phyhip (MGP_PahariEiJ_G0030499) #31	Polr3d (MGP_PahariEiJ_G0030498) #32	Piwil2 (MGP_PahariEiJ_G0030497) #33	Slc39a14 (MGP_PahariEiJ_G0030496) #34	Ppp3cc (MGP_PahariEiJ_G0030495) #35	Sorbs3 (MGP_PahariEiJ_G0030494) #36	Pdlim2 (MGP_PahariEiJ_G0030493) #37	9930012K11Rik (MGP_PahariEiJ_G0030492)
Rat	MODERN SPECIES	6	Lpar6 (ENSRNOG00000015577)	Rb1 (ENSRNOG00000016029)	Rcbtb2 (ENSRNOG00000015054)	ENSRNOG00000067330	Cysltr2 (ENSRNOG00000067464)	Fndc3a (ENSRNOG00000014478)	Gm9195 (ENSRNOG00000064068)	Ndufb2 (ENSRNOG00000026616)	Dpm3 (ENSRNOG00000029077)	ENSRNOG00000065077	Gfra2 (ENSRNOG00000014010) #17	Dok2 (ENSRNOG00000013922) #18	Xpo7 (ENSRNOG00000013288) #19	Npm2 (ENSRNOG00000025638) #20	Fgf17 (ENSRNOG00000012912) #21	Dmtn (ENSRNOG00000012273) #22	Fhip2b (ENSRNOG00000012014) #23	Nudt18 (ENSRNOG00000011831) #25	Hr (ENSRNOG00000011427) #26	Reep4 (ENSRNOG00000011373) #27	Lgi3 (ENSRNOG00000011323) #28	Sftpc (ENSRNOG00000011177) #29	Bmp1 (ENSRNOG00000010890) #30	Phyhip (ENSRNOG00000010555) #31	Polr3d (ENSRNOG00000010028) #32	Piwil2 (ENSRNOG00000009871) #33	Slc39a14 (ENSRNOG00000009832) #34	Ppp3cc (ENSRNOG00000009745) #35	Sorbs3 (ENSRNOG00000008829) #36	Pdlim2 (ENSRNOG00000008543) #37	C15h8orf58 (ENSRNOG00000008351)
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT01100000263536.B.c.a	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00940000158925	ENSGT01100000263536.B.c.a	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Prairie vole	MODERN SPECIES	4	ENSMOCG00000011477	Nudt15 (ENSMOCG00000003875)	Med4 (ENSMOCG00000002608)	Itm2b (ENSMOCG00000021655)	Lpar6 (ENSMOCG00000007205)	Rb1 (ENSMOCG00000010218)	Rcbtb2 (ENSMOCG00000018787)	ENSMOCG00000007313	Fndc3a (ENSMOCG00000018330)	Gm9195 (ENSMOCG00000022806)	Gfra2 (ENSMOCG00000014649) #17	Dok2 (ENSMOCG00000019946) #18	Xpo7 (ENSMOCG00000002336) #19	Npm2 (ENSMOCG00000017251) #20	Fgf17 (ENSMOCG00000016452) #21	Dmtn (ENSMOCG00000021436) #22	Fhip2b (ENSMOCG00000008531) #23	Nudt18 (ENSMOCG00000007739) #25	Hr (ENSMOCG00000000216) #26	Reep4 (ENSMOCG00000022325) #27	Lgi3 (ENSMOCG00000021903) #28	Sftpc (ENSMOCG00000010064) #29	Bmp1 (ENSMOCG00000008585) #30	Phyhip (ENSMOCG00000007599) #31	Polr3d (ENSMOCG00000005195) #32	Piwil2 (ENSMOCG00000003446) #33	Slc39a14 (ENSMOCG00000006559) #34	Ppp3cc (ENSMOCG00000018622) #35	Sorbs3 (ENSMOCG00000008784) #36	Pdlim2 (ENSMOCG00000020649) #37	9930012K11Rik (ENSMOCG00000019565)
Northern American deer mouse	MODERN SPECIES	22	Nudt15 (ENSPEMG00000013922)	Med4 (ENSPEMG00000000371)	Itm2b (ENSPEMG00000020178)	ENSPEMG00000029678	Lpar6 (ENSPEMG00000012942)	Rb1 (ENSPEMG00000020245)	ENSPEMG00000006635	ENSPEMG00000031384	Fndc3a (ENSPEMG00000021668)	Gm9195 (ENSPEMG00000008194)	Gfra2 (ENSPEMG00000009994) #17	Dok2 (ENSPEMG00000023202) #18	Xpo7 (ENSPEMG00000007759) #19	Npm2 (ENSPEMG00000013368) #20	Fgf17 (ENSPEMG00000030845) #21	Dmtn (ENSPEMG00000010274) #22	Fhip2b (ENSPEMG00000022531) #23	Nudt18 (ENSPEMG00000014423) #25	Hr (ENSPEMG00000016906) #26	Reep4 (ENSPEMG00000023573) #27	Lgi3 (ENSPEMG00000021332) #28	Sftpc (ENSPEMG00000022130) #29	Bmp1 (ENSPEMG00000022496) #30	Phyhip (ENSPEMG00000031322) #31	Polr3d (ENSPEMG00000023314) #32	Piwil2 (ENSPEMG00000021798) #33	Ppp3cc (ENSPEMG00000015904) #35	Sorbs3 (ENSPEMG00000019062) #36	Pdlim2 (ENSPEMG00000011746) #37	9930012K11Rik (ENSPEMG00000016741)	Ccar2 (ENSPEMG00000009116)
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00390000010170.a.b	ENSGT00390000003338	ENSGT00390000012063	ENSGT00950000183115.b.a	ENSGT00950000183202.b	ENSGT01040000240444.A.a.a.a.a	ENSGT00940000158925	ENSGT01100000263536.B.c.a	ENSGT00940000159319	ENSGT00740000115687	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Chinese hamster chok1gshd	MODERN SPECIES	3	SUCLA2 (ENSCGRG00001009190)	Nudt15 (ENSCGRG00001001521)	Med4 (ENSCGRG00001018208)	Itm2b (ENSCGRG00001015807)	Lpar6 (ENSCGRG00001011474)	Rb1 (ENSCGRG00001022172)	Rcbtb2 (ENSCGRG00001016446)	ENSCGRG00001010401	Fndc3a (ENSCGRG00001020347)	Gm9195 (ENSCGRG00001003097)	Gfra2 (ENSCGRG00001022337) #17	Dok2 (ENSCGRG00001020098) #18	Xpo7 (ENSCGRG00001005783) #19	Npm2 (ENSCGRG00001002208) #20	Fgf17 (ENSCGRG00001022053) #21	Dmtn (ENSCGRG00001022357) #22	Fhip2b (ENSCGRG00001011801) #23	Nudt18 (ENSCGRG00001004686) #25	Hr (ENSCGRG00001014790) #26	Reep4 (ENSCGRG00001006811) #27	Lgi3 (ENSCGRG00001018802) #28	Sftpc (ENSCGRG00001016044) #29	Bmp1 (ENSCGRG00001011754) #30	Phyhip (ENSCGRG00001017258) #31	Polr3d (ENSCGRG00001010339) #32	Piwil2 (ENSCGRG00001013004) #33	Slc39a14 (ENSCGRG00001020763) #34	Ppp3cc (ENSCGRG00001021761) #35	Sorbs3 (ENSCGRG00001019180) #36	Pdlim2 (ENSCGRG00001018717) #37	9930012K11Rik (ENSCGRG00001022180)
Golden Hamster	MODERN SPECIES	642	Sucla2 (ENSMAUG00000008374)	Nudt15 (ENSMAUG00000018405)	Med4 (ENSMAUG00000021269)	Itm2b (ENSMAUG00000017281)	Rb1 (ENSMAUG00000020865)	Lpar6 (ENSMAUG00000006841)	Rcbtb2 (ENSMAUG00000013502)	ENSMAUG00000008735	Fndc3a (ENSMAUG00000011429)	Gm9195 (ENSMAUG00000017114)	Gfra2 (ENSMAUG00000003686) #17	Dok2 (ENSMAUG00000020434) #18	Xpo7 (ENSMAUG00000000727) #19	Npm2 (ENSMAUG00000004228) #20	Fgf17 (ENSMAUG00000014970) #21	Dmtn (ENSMAUG00000007804) #22	Fhip2b (ENSMAUG00000019012) #23	Nudt18 (ENSMAUG00000010693) #25	Hr (ENSMAUG00000018799) #26	Reep4 (ENSMAUG00000008766) #27	Lgi3 (ENSMAUG00000003562) #28	Sftpc (ENSMAUG00000013512) #29	Bmp1 (ENSMAUG00000000896) #30	Phyhip (ENSMAUG00000021601) #31	Polr3d (ENSMAUG00000006844) #32	Piwil2 (ENSMAUG00000003138) #33	Slc39a14 (ENSMAUG00000018755) #34	Ppp3cc (ENSMAUG00000000668) #35	Sorbs3 (ENSMAUG00000021963) #36	Pdlim2 (ENSMAUG00000019610) #37	9930012K11Rik (ENSMAUG00000021973)
Upper Galilee mountains blind mole rat	MODERN SPECIES	487				Sh2d4a (ENSNGAG00000006839) #10	Csgalnact1 (ENSNGAG00000012969) #11	Ints10 (ENSNGAG00000021756) #12	Lpl (ENSNGAG00000022867) #13	Slc18a1 (ENSNGAG00000014813) #14	Atp6v1b2 (ENSNGAG00000022586) #15	Lzts1 (ENSNGAG00000014557) #16	Gfra2 (ENSNGAG00000022669) #17	Dok2 (ENSNGAG00000010269) #18	Xpo7 (ENSNGAG00000015565) #19	Npm2 (ENSNGAG00000022056) #20	Fgf17 (ENSNGAG00000022264) #21	Dmtn (ENSNGAG00000000753) #22	Fhip2b (ENSNGAG00000004341) #23	Nudt18 (ENSNGAG00000009752) #25	Hr (ENSNGAG00000011133) #26	Reep4 (ENSNGAG00000013623) #27	Lgi3 (ENSNGAG00000014366) #28	Sftpc (ENSNGAG00000016974) #29	Bmp1 (ENSNGAG00000014134) #30	Phyhip (ENSNGAG00000012944) #31	Polr3d (ENSNGAG00000013872) #32	Piwil2 (ENSNGAG00000015408) #33	Slc39a14 (ENSNGAG00000018684) #34	Ppp3cc (ENSNGAG00000013527) #35	Sorbs3 (ENSNGAG00000015206) #36	Pdlim2 (ENSNGAG00000007929) #37	9930012K11Rik (ENSNGAG00000010379)
Lagomorpha	ANCESTRAL SPECIES	128											ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Rabbit	MODERN SPECIES	531											GFRA2 (ENSOCUG00000001190) #17	ENSOCUG00000020947 #18	XPO7 (ENSOCUG00000005065) #19	NPM2 (ENSOCUG00000021756) #20	FGF17 (ENSOCUG00000025535) #21	DMTN (ENSOCUG00000024877) #22	FHIP2B (ENSOCUG00000005031) #23	ENSOCUG00000005036 #25	HR (ENSOCUG00000026384) #26	ENSOCUG00000002017 #27	LGI3 (ENSOCUG00000002020) #28	ENSOCUG00000002024 #29	BMP1 (ENSOCUG00000010592) #30	PHYHIP (ENSOCUG00000009909) #31	POLR3D (ENSOCUG00000017410) #32	PIWIL2 (ENSOCUG00000006261) #33	SLC39A14 (ENSOCUG00000008681) #34	PPP3CC (ENSOCUG00000006535) #35	SORBS3 (ENSOCUG00000027519) #36	PDLIM2 (ENSOCUG00000021361) #37	C8orf58 (ENSOCUG00000013217)
Pika	MODERN SPECIES	1028													XPO7 (ENSOPRG00000012906) #19	NPM2 (ENSOPRG00000012940) #20	FGF17 (ENSOPRG00000012957) #21	ENSOPRG00000012965 #22	FHIP2B (ENSOPRG00000013021) #23	ENSOPRG00000013052 #25	LGI3 (ENSOPRG00000013108) #28	BMP1 (ENSOPRG00000013121) #30	POLR3D (ENSOPRG00000013146) #32	PIWIL2 (ENSOPRG00000013167) #33	PPP3CC (ENSOPRG00000013192) #35	SORBS3 (ENSOPRG00000013214) #36	PDLIM2 (ENSOPRG00000013237) #37	C8orf58 (ENSOPRG00000013255)	CCAR2 (ENSOPRG00000013271)	BIN3 (ENSOPRG00000013301)	EGR3 (ENSOPRG00000013328)	PEBP4 (ENSOPRG00000013337)	RHOBTB2 (ENSOPRG00000013353)
Tree shrew	MODERN SPECIES	2863																ENSTBEG00000001442 #22
Primates	ANCESTRAL SPECIES	25	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Haplorrhini	ANCESTRAL SPECIES	27	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Tarsier	MODERN SPECIES	6723											GFRA2 (ENSTSYG00000034433) #17	DOK2 (ENSTSYG00000033054) #18	XPO7 (ENSTSYG00000011721) #19	NPM2 (ENSTSYG00000026275) #20	FGF17 (ENSTSYG00000031916) #21	DMTN (ENSTSYG00000035753) #22
Simiiformes	ANCESTRAL SPECIES	25	ENSGT00390000012054.b.cb #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Platyrrhini	ANCESTRAL SPECIES	29	ENSGT00390000012054.b.bb #7	ENSGT00910000146896	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Cebidae	ANCESTRAL SPECIES	30	ENSGT00390000012054.b.bb #7	ENSGT00910000146896	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Marmoset	MODERN SPECIES	4	PSD3 (ENSCJAG00000040768) #8	SH2D4A (ENSCJAG00000014251) #10	CSGALNACT1 (ENSCJAG00000014270) #11	INTS10 (ENSCJAG00000014313) #12	LPL (ENSCJAG00000014346) #13	SLC18A1 (ENSCJAG00000014369) #14	ATP6V1B2 (ENSCJAG00000014436) #15	LZTS1 (ENSCJAG00000014459) #16	ENSCJAG00000076970	GFRA2 (ENSCJAG00000020432) #17	ENSCJAG00000066215	DOK2 (ENSCJAG00000020429) #18	XPO7 (ENSCJAG00000020396) #19	NPM2 (ENSCJAG00000020389) #20	FGF17 (ENSCJAG00000020336) #21	DMTN (ENSCJAG00000020366) #22	FHIP2B (ENSCJAG00000020359) #23	NUDT18 (ENSCJAG00000020357) #25	HR (ENSCJAG00000020347) #26	REEP4 (ENSCJAG00000020323) #27	LGI3 (ENSCJAG00000020317) #28	SFTPC (ENSCJAG00000020313) #29	BMP1 (ENSCJAG00000020290) #30	PHYHIP (ENSCJAG00000059701) #31	POLR3D (ENSCJAG00000020278) #32	PIWIL2 (ENSCJAG00000020263) #33	SLC39A14 (ENSCJAG00000038713) #34	PPP3CC (ENSCJAG00000020251) #35	SORBS3 (ENSCJAG00000020235) #36	PDLIM2 (ENSCJAG00000020226) #37	C8orf58 (ENSCJAG00000020218)
Cebidae_a	ANCESTRAL SPECIES	44	ENSGT00390000012054.b.bb #7	ENSGT00910000146896	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Bolivian squirrel monkey	MODERN SPECIES	132											GFRA2 (ENSSBOG00000020287) #17	DOK2 (ENSSBOG00000033525) #18	XPO7 (ENSSBOG00000019149) #19	NPM2 (ENSSBOG00000025301) #20	FGF17 (ENSSBOG00000027824) #21	DMTN (ENSSBOG00000031139) #22	FHIP2B (ENSSBOG00000025249) #23	NUDT18 (ENSSBOG00000002418) #25	HR (ENSSBOG00000019701) #26	REEP4 (ENSSBOG00000033132) #27	LGI3 (ENSSBOG00000031807) #28	SFTPC (ENSSBOG00000004104) #29	BMP1 (ENSSBOG00000033938) #30	PHYHIP (ENSSBOG00000027779) #31	POLR3D (ENSSBOG00000024956) #32	PIWIL2 (ENSSBOG00000030819) #33	SLC39A14 (ENSSBOG00000027609) #34	PPP3CC (ENSSBOG00000018145) #35	SORBS3 (ENSSBOG00000021723) #36	PDLIM2 (ENSSBOG00000019060) #37	C8orf58 (ENSSBOG00000013565)
Capuchin	MODERN SPECIES	221														NPM2 (ENSCCAG00000035076) #20	FGF17 (ENSCCAG00000031622) #21	DMTN (ENSCCAG00000019384) #22	FHIP2B (ENSCCAG00000022871) #23	NUDT18 (ENSCCAG00000037530) #25	HR (ENSCCAG00000015914) #26	REEP4 (ENSCCAG00000034865) #27	LGI3 (ENSCCAG00000036853) #28	SFTPC (ENSCCAG00000024595) #29	BMP1 (ENSCCAG00000035756) #30	PHYHIP (ENSCCAG00000020644) #31	POLR3D (ENSCCAG00000019817) #32	PIWIL2 (ENSCCAG00000033068) #33	SLC39A14 (ENSCCAG00000023190) #34	PPP3CC (ENSCCAG00000020386) #35	SORBS3 (ENSCCAG00000027374) #36	PDLIM2 (ENSCCAG00000038057) #37	C8orf58 (ENSCCAG00000036764)
Mas night monkey	MODERN SPECIES	974	ASAH1 (ENSANAG00000021729)	ENSANAG00000024921	PSD3 (ENSANAG00000029537) #8	SH2D4A (ENSANAG00000027643) #10	CSGALNACT1 (ENSANAG00000034148) #11	INTS10 (ENSANAG00000025108) #12	LPL (ENSANAG00000025856) #13	SLC18A1 (ENSANAG00000028925) #14	ATP6V1B2 (ENSANAG00000032926) #15	LZTS1 (ENSANAG00000037181) #16	GFRA2 (ENSANAG00000023171) #17	DOK2 (ENSANAG00000028831) #18	ENSANAG00000026595 #19	ENSANAG00000038138 #20	FGF17 (ENSANAG00000033888) #21	DMTN (ENSANAG00000038467) #22	FHIP2B (ENSANAG00000023830) #23	NUDT18 (ENSANAG00000026181) #25	HR (ENSANAG00000030904) #26	REEP4 (ENSANAG00000028478) #27	LGI3 (ENSANAG00000029953) #28	SFTPC (ENSANAG00000023981) #29	BMP1 (ENSANAG00000035054) #30	PHYHIP (ENSANAG00000034871) #31	POLR3D (ENSANAG00000030023) #32	PIWIL2 (ENSANAG00000027198) #33	SLC39A14 (ENSANAG00000036843) #34	PPP3CC (ENSANAG00000025764) #35	SORBS3 (ENSANAG00000026249) #36	PDLIM2 (ENSANAG00000037493) #37	C8orf58 (ENSANAG00000026815)
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00910000146987	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195
Hominidae	ANCESTRAL SPECIES	15	ENSGT00940000156591 #8	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00910000146987	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000167974	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00910000146987	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000167974	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00910000146987	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35
Pan	ANCESTRAL SPECIES	30	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000167974	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00910000146987	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Chimpanzee	MODERN SPECIES	21	PSD3 (ENSPTRG00000020031) #8	ENSPTRG00000052191 #9	SH2D4A (ENSPTRG00000020034) #10	CSGALNACT1 (ENSPTRG00000020035) #11	INTS10 (ENSPTRG00000049064) #12	LPL (ENSPTRG00000020038) #13	SLC18A1 (ENSPTRG00000020039) #14	ATP6V1B2 (ENSPTRG00000020040) #15	LZTS1 (ENSPTRG00000042132) #16	ENSPTRG00000049958	GFRA2 (ENSPTRG00000020042) #17	DOK2 (ENSPTRG00000020043) #18	XPO7 (ENSPTRG00000020044) #19	NPM2 (ENSPTRG00000020045) #20	FGF17 (ENSPTRG00000020046) #21	DMTN (ENSPTRG00000020047) #22	FHIP2B (ENSPTRG00000020048) #23	ENSPTRG00000044059 #24	NUDT18 (ENSPTRG00000020049) #25	HR (ENSPTRG00000020050) #26	REEP4 (ENSPTRG00000020051) #27	LGI3 (ENSPTRG00000020052) #28	SFTPC (ENSPTRG00000020053) #29	BMP1 (ENSPTRG00000020054) #30	ENSPTRG00000050226	PHYHIP (ENSPTRG00000020055) #31	POLR3D (ENSPTRG00000020056) #32	PIWIL2 (ENSPTRG00000022613) #33	SLC39A14 (ENSPTRG00000020058) #34	PPP3CC (ENSPTRG00000020059) #35	SORBS3 (ENSPTRG00000020061) #36
Bonobo	MODERN SPECIES	21	ENSPPAG00000013642	PSD3 (ENSPPAG00000026209) #8	SH2D4A (ENSPPAG00000029266) #10	CSGALNACT1 (ENSPPAG00000018139) #11	INTS10 (ENSPPAG00000011743) #12	LPL (ENSPPAG00000026199) #13	SLC18A1 (ENSPPAG00000038432) #14	ATP6V1B2 (ENSPPAG00000043352) #15	LZTS1 (ENSPPAG00000038430) #16	ENSPPAG00000039430	GFRA2 (ENSPPAG00000004816) #17	DOK2 (ENSPPAG00000039262) #18	XPO7 (ENSPPAG00000028443) #19	NPM2 (ENSPPAG00000040749) #20	FGF17 (ENSPPAG00000042990) #21	DMTN (ENSPPAG00000041277) #22	FHIP2B (ENSPPAG00000044138) #23	ENSPPAG00000043637 #24	NUDT18 (ENSPPAG00000031703) #25	HR (ENSPPAG00000032662) #26	REEP4 (ENSPPAG00000035458) #27	LGI3 (ENSPPAG00000036882) #28	SFTPC (ENSPPAG00000039784) #29	BMP1 (ENSPPAG00000020298) #30	PHYHIP (ENSPPAG00000028451) #31	POLR3D (ENSPPAG00000029591) #32	PIWIL2 (ENSPPAG00000033460) #33	SLC39A14 (ENSPPAG00000002345) #34	PPP3CC (ENSPPAG00000034859) #35	SORBS3 (ENSPPAG00000031630) #36	ENSPPAG00000037870 #37
Human	MODERN SPECIES	20	NAT1 (ENSG00000171428) #7	NAT2 (ENSG00000156006) #7	PSD3 (ENSG00000156011) #8	SH2D4A (ENSG00000104611) #10	CSGALNACT1 (ENSG00000147408) #11	INTS10 (ENSG00000104613) #12	LPL (ENSG00000175445) #13	SLC18A1 (ENSG00000036565) #14	ATP6V1B2 (ENSG00000147416) #15	LZTS1 (ENSG00000061337) #16	GFRA2 (ENSG00000168546) #17	DOK2 (ENSG00000147443) #18	XPO7 (ENSG00000130227) #19	NPM2 (ENSG00000158806) #20	FGF17 (ENSG00000158815) #21	DMTN (ENSG00000158856) #22	FHIP2B (ENSG00000158863) #23	NUDT18 (ENSG00000275074) #25	HR (ENSG00000168453) #26	HRURF (ENSG00000288677)	REEP4 (ENSG00000168476) #27	LGI3 (ENSG00000168481) #28	SFTPC (ENSG00000168484) #29	BMP1 (ENSG00000168487) #30	PHYHIP (ENSG00000168490) #31	POLR3D (ENSG00000168495) #32	PIWIL2 (ENSG00000197181) #33	SLC39A14 (ENSG00000104635) #34	PPP3CC (ENSG00000120910) #35	SORBS3 (ENSG00000120896) #36	PDLIM2 (ENSG00000120913) #37
Gorilla	MODERN SPECIES	21	ENSGGOG00000038176 #9	ENSGGOG00000009657 #10	CSGALNACT1 (ENSGGOG00000009665) #11	INTS10 (ENSGGOG00000000190) #12	LPL (ENSGGOG00000015435) #13	SLC18A1 (ENSGGOG00000003882) #14	ATP6V1B2 (ENSGGOG00000003888) #15	LZTS1 (ENSGGOG00000000591) #16	ENSGGOG00000040023	ENSGGOG00000037512	GFRA2 (ENSGGOG00000013737) #17	DOK2 (ENSGGOG00000000207) #18	XPO7 (ENSGGOG00000014954) #19	NPM2 (ENSGGOG00000007071) #20	FGF17 (ENSGGOG00000007066) #21	DMTN (ENSGGOG00000002742) #22	FHIP2B (ENSGGOG00000004475) #23	ENSGGOG00000037224 #24	NUDT18 (ENSGGOG00000004482) #25	HR (ENSGGOG00000004484) #26	REEP4 (ENSGGOG00000004492) #27	LGI3 (ENSGGOG00000000834) #28	ENSGGOG00000038076	PHYHIP (ENSGGOG00000007296) #31	POLR3D (ENSGGOG00000007302) #32	ENSGGOG00000008783 #33	SLC39A14 (ENSGGOG00000003765) #34	ENSGGOG00000038991	PPP3CC (ENSGGOG00000012671) #35	ENSGGOG00000040777	SORBS3 (ENSGGOG00000002413) #36
Orangutan	MODERN SPECIES	21	ENSPPYG00000031671 #7	NAT2 (ENSPPYG00000033542) #7	PSD3 (ENSPPYG00000018396) #8	ENSPPYG00000031346 #9	SH2D4A (ENSPPYG00000018397) #10	CSGALNACT1 (ENSPPYG00000018398) #11	INTS10 (ENSPPYG00000018400) #12	LPL (ENSPPYG00000030867) #13	SLC18A1 (ENSPPYG00000018402) #14	ATP6V1B2 (ENSPPYG00000018403) #15	LZTS1 (ENSPPYG00000018404) #16	GFRA2 (ENSPPYG00000018405) #17	DOK2 (ENSPPYG00000018406) #18	XPO7 (ENSPPYG00000018407) #19	FGF17 (ENSPPYG00000018409) #21	DMTN (ENSPPYG00000018410) #22	FHIP2B (ENSPPYG00000018411) #23	ENSPPYG00000040778 #25	HR (ENSPPYG00000018413) #26	REEP4 (ENSPPYG00000018414) #27	LGI3 (ENSPPYG00000018415) #28	SFTPC (ENSPPYG00000018416) #29	BMP1 (ENSPPYG00000037265) #30	PHYHIP (ENSPPYG00000037185) #31	POLR3D (ENSPPYG00000018419) #32	PIWIL2 (ENSPPYG00000018420) #33	SLC39A14 (ENSPPYG00000018421) #34	PPP3CC (ENSPPYG00000018422) #35	SORBS3 (ENSPPYG00000018423) #36	ENSPPYG00000018424 #37	C8orf58 (ENSPPYG00000018425)
Gibbon	MODERN SPECIES	23	TBC1D5 (ENSNLEG00000000935)	ENSNLEG00000034876	ENSNLEG00000031530	SATB1 (ENSNLEG00000000912)	ENSNLEG00000031311	KCNH8 (ENSNLEG00000000890)	SLC18A1 (ENSNLEG00000000859) #14	ATP6V1B2 (ENSNLEG00000000794) #15	LZTS1 (ENSNLEG00000000782) #16	ENSNLEG00000028452	ENSNLEG00000000770 #17	DOK2 (ENSNLEG00000026541) #18	XPO7 (ENSNLEG00000026557) #19	NPM2 (ENSNLEG00000035765) #20	FGF17 (ENSNLEG00000027380) #21	DMTN (ENSNLEG00000033363) #22	FHIP2B (ENSNLEG00000031590) #23	ENSNLEG00000032535 #24	NUDT18 (ENSNLEG00000028376) #25	HR (ENSNLEG00000031366) #26	REEP4 (ENSNLEG00000026748) #27	LGI3 (ENSNLEG00000027653) #28	SFTPC (ENSNLEG00000029765) #29	BMP1 (ENSNLEG00000031878) #30	ENSNLEG00000033421	PHYHIP (ENSNLEG00000028977) #31	ENSNLEG00000015502 #32	PIWIL2 (ENSNLEG00000015534) #33	SLC39A14 (ENSNLEG00000015557) #34	PPP3CC (ENSNLEG00000015570) #35	SORBS3 (ENSNLEG00000015594) #36
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00910000146987	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Rhinopithecus	ANCESTRAL SPECIES	13							ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00910000146987	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Black snub-nosed monkey	MODERN SPECIES	2173												DOK2 (ENSRBIG00000028764) #18	XPO7 (ENSRBIG00000044650) #19	NPM2 (ENSRBIG00000029235) #20	FGF17 (ENSRBIG00000039451) #21	DMTN (ENSRBIG00000043953) #22	FHIP2B (ENSRBIG00000042849) #23	NUDT18 (ENSRBIG00000037911) #25	HR (ENSRBIG00000035768) #26	REEP4 (ENSRBIG00000043571) #27	LGI3 (ENSRBIG00000014202) #28	SFTPC (ENSRBIG00000043642) #29	ENSRBIG00000028477	BMP1 (ENSRBIG00000026588) #30	PHYHIP (ENSRBIG00000034495) #31	POLR3D (ENSRBIG00000035406) #32
Golden snub-nosed monkey	MODERN SPECIES	1213									ENSRROG00000038519	GFRA2 (ENSRROG00000041259) #17	DOK2 (ENSRROG00000040940) #18	ENSRROG00000028479	XPO7 (ENSRROG00000041370) #19	NPM2 (ENSRROG00000044119) #20	FGF17 (ENSRROG00000037640) #21	DMTN (ENSRROG00000042891) #22	FHIP2B (ENSRROG00000010275) #23	NUDT18 (ENSRROG00000034673) #25	HR (ENSRROG00000041553) #26	REEP4 (ENSRROG00000032220) #27	LGI3 (ENSRROG00000031727) #28	SFTPC (ENSRROG00000038698) #29	BMP1 (ENSRROG00000038430) #30	PHYHIP (ENSRROG00000035566) #31	POLR3D (ENSRROG00000037278) #32	PIWIL2 (ENSRROG00000037847) #33	SLC39A14 (ENSRROG00000031789) #34	PPP3CC (ENSRROG00000037107) #35	ENSRROG00000036409	SORBS3 (ENSRROG00000038814) #36	PDLIM2 (ENSRROG00000040746) #37
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00910000146987	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Vervet Monkey	MODERN SPECIES	27	NAT1 (ENSCSAG00000018520) #7	NAT2 (ENSCSAG00000018521) #7	PSD3 (ENSCSAG00000016719) #8	SH2D4A (ENSCSAG00000016716) #10	CSGALNACT1 (ENSCSAG00000016715) #11	INTS10 (ENSCSAG00000016707) #12	LPL (ENSCSAG00000016700) #13	SLC18A1 (ENSCSAG00000016697) #14	ATP6V1B2 (ENSCSAG00000016689) #15	LZTS1 (ENSCSAG00000016684) #16	GFRA2 (ENSCSAG00000016680) #17	DOK2 (ENSCSAG00000016676) #18	XPO7 (ENSCSAG00000016659) #19	NPM2 (ENSCSAG00000016588) #20	FGF17 (ENSCSAG00000016583) #21	DMTN (ENSCSAG00000016581) #22	FHIP2B (ENSCSAG00000016576) #23	NUDT18 (ENSCSAG00000016570) #25	HR (ENSCSAG00000016565) #26	REEP4 (ENSCSAG00000016559) #27	LGI3 (ENSCSAG00000016552) #28	SFTPC (ENSCSAG00000016543) #29	BMP1 (ENSCSAG00000016537) #30	PHYHIP (ENSCSAG00000016530) #31	POLR3D (ENSCSAG00000016525) #32	PIWIL2 (ENSCSAG00000016512) #33	SLC39A14 (ENSCSAG00000016470) #34	PPP3CC (ENSCSAG00000016452) #35	SORBS3 (ENSCSAG00000016403) #36	PDLIM2 (ENSCSAG00000016392) #37	C8orf58 (ENSCSAG00000016376)
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00910000146987	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Macaca	ANCESTRAL SPECIES	14	ENSGT00940000156591 #8	ENSGT00430000032882	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00910000146987	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00390000008767.a.a.a.a.g.b	ENSGT00390000012054.b.cb #7	ENSGT01100000264947	ENSGT00940000156591 #8	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Crab-eating macaque	MODERN SPECIES	18	NAT2 (ENSMFAG00000050025) #7	ENSMFAG00000058392	PSD3 (ENSMFAG00000001770) #8	SH2D4A (ENSMFAG00000007156) #10	CSGALNACT1 (ENSMFAG00000045019) #11	ENSMFAG00000050311	INTS10 (ENSMFAG00000039216) #12	LPL (ENSMFAG00000041424) #13	SLC18A1 (ENSMFAG00000029619) #14	ATP6V1B2 (ENSMFAG00000033694) #15	LZTS1 (ENSMFAG00000010460) #16	GFRA2 (ENSMFAG00000023628) #17	DOK2 (ENSMFAG00000026923) #18	XPO7 (ENSMFAG00000030886) #19	ENSMFAG00000032610 #21	DMTN (ENSMFAG00000036684) #22	REEP4 (ENSMFAG00000036428) #27	FHIP2B (ENSMFAG00000041716) #23	NUDT18 (ENSMFAG00000001150) #25	HR (ENSMFAG00000040324) #26	LGI3 (ENSMFAG00000031993) #28	SFTPC (ENSMFAG00000003047) #29	BMP1 (ENSMFAG00000040256) #30	PHYHIP (ENSMFAG00000044768) #31	POLR3D (ENSMFAG00000029141) #32	PIWIL2 (ENSMFAG00000038537) #33	SLC39A14 (ENSMFAG00000003405) #34	PPP3CC (ENSMFAG00000007036) #35	SORBS3 (ENSMFAG00000030516) #36	PDLIM2 (ENSMFAG00000032463) #37	ENSMFAG00000040671
Rhesus	MODERN SPECIES	18	ENSMMUG00000052632	PSD3 (ENSMMUG00000016385) #8	SH2D4A (ENSMMUG00000000129) #10	CSGALNACT1 (ENSMMUG00000000130) #11	INTS10 (ENSMMUG00000011774) #12	LPL (ENSMMUG00000004712) #13	SLC18A1 (ENSMMUG00000019999) #14	ATP6V1B2 (ENSMMUG00000020000) #15	LZTS1 (ENSMMUG00000017711) #16	ENSMMUG00000051330	ENSMMUG00000050781	ENSMMUG00000065227	GFRA2 (ENSMMUG00000023361) #17	DOK2 (ENSMMUG00000023464) #18	XPO7 (ENSMMUG00000002032) #19	DMTN (ENSMMUG00000005870) #22	FHIP2B (ENSMMUG00000013017) #23	NUDT18 (ENSMMUG00000049401) #25	HR (ENSMMUG00000013022) #26	REEP4 (ENSMMUG00000059519) #27	LGI3 (ENSMMUG00000013028) #28	SFTPC (ENSMMUG00000013029) #29	BMP1 (ENSMMUG00000013031) #30	PHYHIP (ENSMMUG00000013032) #31	POLR3D (ENSMMUG00000023226) #32	PIWIL2 (ENSMMUG00000014438) #33	SLC39A14 (ENSMMUG00000017713) #34	PPP3CC (ENSMMUG00000014442) #35	SORBS3 (ENSMMUG00000014445) #36	PDLIM2 (ENSMMUG00000018520) #37	CCAR2 (ENSMMUG00000021991)
Pig-tailed macaque	MODERN SPECIES	579	ENSMNEG00000028769 #9	SH2D4A (ENSMNEG00000031934) #10	CSGALNACT1 (ENSMNEG00000044216) #11	INTS10 (ENSMNEG00000044608) #12	LPL (ENSMNEG00000033997) #13	SLC18A1 (ENSMNEG00000045015) #14	ATP6V1B2 (ENSMNEG00000039883) #15	LZTS1 (ENSMNEG00000044405) #16	ENSMNEG00000043481	ENSMNEG00000029180	GFRA2 (ENSMNEG00000029112) #17	DOK2 (ENSMNEG00000037176) #18	XPO7 (ENSMNEG00000032724) #19	NPM2 (ENSMNEG00000010994) #20	FGF17 (ENSMNEG00000041787) #21	DMTN (ENSMNEG00000044690) #22	FHIP2B (ENSMNEG00000028867) #23	ENSMNEG00000038049 #24	NUDT18 (ENSMNEG00000044949) #25	HR (ENSMNEG00000035451) #26	REEP4 (ENSMNEG00000027664) #27	LGI3 (ENSMNEG00000042561) #28	SFTPC (ENSMNEG00000031500) #29	ENSMNEG00000045192	BMP1 (ENSMNEG00000036161) #30	PHYHIP (ENSMNEG00000029448) #31	POLR3D (ENSMNEG00000039410) #32	PIWIL2 (ENSMNEG00000029268) #33	SLC39A14 (ENSMNEG00000038055) #34	PPP3CC (ENSMNEG00000042956) #35	SORBS3 (ENSMNEG00000038728) #36
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00940000156591 #8	ENSGT00430000032882	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00910000146987	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Olive baboon	MODERN SPECIES	18	PSD3 (ENSPANG00000002437) #8	ENSPANG00000038414	SH2D4A (ENSPANG00000018168) #10	CSGALNACT1 (ENSPANG00000008981) #11	INTS10 (ENSPANG00000000470) #12	LPL (ENSPANG00000006403) #13	SLC18A1 (ENSPANG00000011419) #14	ATP6V1B2 (ENSPANG00000012407) #15	LZTS1 (ENSPANG00000001030) #16	ENSPANG00000043212	GFRA2 (ENSPANG00000008821) #17	DOK2 (ENSPANG00000008980) #18	XPO7 (ENSPANG00000008979) #19	NPM2 (ENSPANG00000031080) #20	FGF17 (ENSPANG00000029232) #21	DMTN (ENSPANG00000020182) #22	FHIP2B (ENSPANG00000009530) #23	NUDT18 (ENSPANG00000016695) #25	HR (ENSPANG00000022909) #26	REEP4 (ENSPANG00000034622) #27	LGI3 (ENSPANG00000032628) #28	SFTPC (ENSPANG00000020597) #29	BMP1 (ENSPANG00000018462) #30	PHYHIP (ENSPANG00000025358) #31	POLR3D (ENSPANG00000009440) #32	PIWIL2 (ENSPANG00000018061) #33	SLC39A14 (ENSPANG00000014294) #34	PPP3CC (ENSPANG00000015060) #35	SORBS3 (ENSPANG00000018889) #36	PDLIM2 (ENSPANG00000022732) #37	C8orf58 (ENSPANG00000026225)
Cercopithecinae_d	ANCESTRAL SPECIES	50	ENSGT00940000156591 #8	ENSGT00430000032882	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000007149.i.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00910000146987	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Drill	MODERN SPECIES	1597											GFRA2 (ENSMLEG00000034552) #17	DOK2 (ENSMLEG00000013752) #18	XPO7 (ENSMLEG00000037104) #19	NPM2 (ENSMLEG00000030071) #20	FGF17 (ENSMLEG00000043499) #21	DMTN (ENSMLEG00000035618) #22	FHIP2B (ENSMLEG00000030917) #23	ENSMLEG00000031810 #24	NUDT18 (ENSMLEG00000035829) #25	HR (ENSMLEG00000039439) #26	REEP4 (ENSMLEG00000035103) #27	LGI3 (ENSMLEG00000032021) #28	SFTPC (ENSMLEG00000039477) #29	ENSMLEG00000011939	BMP1 (ENSMLEG00000037648) #30	PHYHIP (ENSMLEG00000006425) #31	POLR3D (ENSMLEG00000031413) #32	PIWIL2 (ENSMLEG00000041768) #33	SLC39A14 (ENSMLEG00000044350) #34	PPP3CC (ENSMLEG00000015454) #35	SORBS3 (ENSMLEG00000038658) #36
Sooty mangabey	MODERN SPECIES	555			SH2D4A (ENSCATG00000033202) #10	CSGALNACT1 (ENSCATG00000013386) #11	ENSCATG00000020864 #12	LPL (ENSCATG00000041105) #13	SLC18A1 (ENSCATG00000030151) #14	ATP6V1B2 (ENSCATG00000045180) #15	LZTS1 (ENSCATG00000044143) #16	ENSCATG00000032546	GFRA2 (ENSCATG00000030482) #17	DOK2 (ENSCATG00000042874) #18	XPO7 (ENSCATG00000043585) #19	NPM2 (ENSCATG00000031833) #20	FGF17 (ENSCATG00000045309) #21	DMTN (ENSCATG00000041472) #22	ENSCATG00000024074 #24	FHIP2B (ENSCATG00000031433) #23	NUDT18 (ENSCATG00000031847) #25	HR (ENSCATG00000032592) #26	REEP4 (ENSCATG00000041240) #27	LGI3 (ENSCATG00000033781) #28	SFTPC (ENSCATG00000039734) #29	ENSCATG00000036746	BMP1 (ENSCATG00000036263) #30	PHYHIP (ENSCATG00000037111) #31	POLR3D (ENSCATG00000025950) #32	PIWIL2 (ENSCATG00000039784) #33	SLC39A14 (ENSCATG00000041018) #34	PPP3CC (ENSCATG00000039533) #35	SORBS3 (ENSCATG00000037430) #36
Strepsirrhini	ANCESTRAL SPECIES	25	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Bushbaby	MODERN SPECIES	189	ENSOGAG00000025826	PSD3 (ENSOGAG00000029878) #8	SH2D4A (ENSOGAG00000002176) #10	CSGALNACT1 (ENSOGAG00000002178) #11	INTS10 (ENSOGAG00000000559) #12	LPL (ENSOGAG00000000562) #13	SLC18A1 (ENSOGAG00000000563) #14	ATP6V1B2 (ENSOGAG00000000565) #15	LZTS1 (ENSOGAG00000008162) #16	ENSOGAG00000029073	GFRA2 (ENSOGAG00000033772) #17	DOK2 (ENSOGAG00000008350) #18	XPO7 (ENSOGAG00000015218) #19	NPM2 (ENSOGAG00000011562) #20	FGF17 (ENSOGAG00000004882) #21	DMTN (ENSOGAG00000029018) #22	FHIP2B (ENSOGAG00000004887) #23	NUDT18 (ENSOGAG00000004890) #25	HR (ENSOGAG00000033391) #26	REEP4 (ENSOGAG00000004897) #27	LGI3 (ENSOGAG00000004899) #28	SFTPC (ENSOGAG00000004903) #29	ENSOGAG00000031859	BMP1 (ENSOGAG00000004905) #30	PHYHIP (ENSOGAG00000004910) #31	POLR3D (ENSOGAG00000004912) #32	PIWIL2 (ENSOGAG00000004913) #33	SLC39A14 (ENSOGAG00000010558) #34	PPP3CC (ENSOGAG00000010563) #35	SORBS3 (ENSOGAG00000010567) #36	PDLIM2 (ENSOGAG00000010575) #37
Lemuriformes	ANCESTRAL SPECIES	32	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Mouse lemur	MODERN SPECIES	12	ASAH1 (ENSMICG00000006697)	PSD3 (ENSMICG00000005387) #8	SH2D4A (ENSMICG00000010215) #10	CSGALNACT1 (ENSMICG00000010223) #11	INTS10 (ENSMICG00000010227) #12	LPL (ENSMICG00000010245) #13	SLC18A1 (ENSMICG00000011689) #14	ENSMICG00000001791 #15	LZTS1 (ENSMICG00000001804) #16	GFRA2 (ENSMICG00000047452) #17	DOK2 (ENSMICG00000011568) #18	ENSMICG00000032260	XPO7 (ENSMICG00000011573) #19	ENSMICG00000030722 #20	FGF17 (ENSMICG00000029135) #21	DMTN (ENSMICG00000036651) #22	FHIP2B (ENSMICG00000000981) #23	NUDT18 (ENSMICG00000000990) #25	HR (ENSMICG00000001003) #26	REEP4 (ENSMICG00000001013) #27	LGI3 (ENSMICG00000001018) #28	SFTPC (ENSMICG00000001027) #29	BMP1 (ENSMICG00000031636) #30	PHYHIP (ENSMICG00000001045) #31	POLR3D (ENSMICG00000001049) #32	PIWIL2 (ENSMICG00000001062) #33	SLC39A14 (ENSMICG00000001076) #34	PPP3CC (ENSMICG00000001851) #35	SORBS3 (ENSMICG00000003915) #36	PDLIM2 (ENSMICG00000003919) #37	C8orf58 (ENSMICG00000017355)
Lemuriformes_a	ANCESTRAL SPECIES	34	ENSGT00390000012054.b #7	ENSGT00940000156591 #8	ENSGT00680000101436 #9	ENSGT00940000157357 #10	ENSGT01050000244968.c #11	ENSGT00390000010950 #12	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Greater bamboo lemur	MODERN SPECIES	673								SLC18A1 (ENSPSMG00000004593) #14	ATP6V1B2 (ENSPSMG00000004707) #15	LZTS1 (ENSPSMG00000004737) #16	GFRA2 (ENSPSMG00000004798) #17	DOK2 (ENSPSMG00000004822) #18	XPO7 (ENSPSMG00000005028) #19	ENSPSMG00000005172 #20	FGF17 (ENSPSMG00000005178) #21	DMTN (ENSPSMG00000005293) #22	FHIP2B (ENSPSMG00000005392) #23	NUDT18 (ENSPSMG00000005396) #25	HR (ENSPSMG00000005444) #26	REEP4 (ENSPSMG00000005543) #27	LGI3 (ENSPSMG00000005572) #28	SFTPC (ENSPSMG00000005592) #29	BMP1 (ENSPSMG00000005734) #30	PHYHIP (ENSPSMG00000005916) #31	POLR3D (ENSPSMG00000005925) #32	PIWIL2 (ENSPSMG00000006025) #33	SLC39A14 (ENSPSMG00000006113) #34	PPP3CC (ENSPSMG00000006186) #35	SORBS3 (ENSPSMG00000006317) #36	PDLIM2 (ENSPSMG00000006490) #37	C8orf58 (ENSPSMG00000006508)
Coquerels sifaka	MODERN SPECIES	919	ASAH1 (ENSPCOG00000000588)	ENSPCOG00000027679 #8	SH2D4A (ENSPCOG00000026782) #10	CSGALNACT1 (ENSPCOG00000016764) #11	ENSPCOG00000012921	INTS10 (ENSPCOG00000025350) #12	LPL (ENSPCOG00000022366) #13	SLC18A1 (ENSPCOG00000021315) #14	ATP6V1B2 (ENSPCOG00000014950) #15	LZTS1 (ENSPCOG00000013647) #16	GFRA2 (ENSPCOG00000024434) #17	DOK2 (ENSPCOG00000021184) #18	XPO7 (ENSPCOG00000024431) #19	ENSPCOG00000018483 #20	FGF17 (ENSPCOG00000024485) #21	DMTN (ENSPCOG00000018595) #22	FHIP2B (ENSPCOG00000003043) #23	NUDT18 (ENSPCOG00000023646) #25	HR (ENSPCOG00000027676) #26	REEP4 (ENSPCOG00000020374) #27	LGI3 (ENSPCOG00000003250) #28	SFTPC (ENSPCOG00000028479) #29	BMP1 (ENSPCOG00000019817) #30	PHYHIP (ENSPCOG00000019188) #31	POLR3D (ENSPCOG00000028134) #32	PIWIL2 (ENSPCOG00000019344) #33	SLC39A14 (ENSPCOG00000017231) #34	PPP3CC (ENSPCOG00000018145) #35	SORBS3 (ENSPCOG00000023510) #36	PDLIM2 (ENSPCOG00000028327) #37	C8orf58 (ENSPCOG00000019584)
Laurasiatheria	ANCESTRAL SPECIES	24	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00680000101436 #9	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00680000101436 #9	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000158196	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Suina	ANCESTRAL SPECIES	42							ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Pig	MODERN SPECIES	5	ENSSSCG00000009595	ENSSSCG00000051966	ENSSSCG00000057041	ENSSSCG00000033204	ENSSSCG00000061155	LPL (ENSSSCG00000040631) #13	ENSSSCG00000059730	SLC18A1 (ENSSSCG00000009601) #14	ATP6V1B2 (ENSSSCG00000028694) #15	LZTS1 (ENSSSCG00000028559) #16	GFRA2 (ENSSSCG00000009605) #17	DOK2 (ENSSSCG00000009612) #18	XPO7 (ENSSSCG00000009611) #19	NPM2 (ENSSSCG00000009610) #20	FGF17 (ENSSSCG00000009609) #21	DMTN (ENSSSCG00000009613) #22	FHIP2B (ENSSSCG00000009614) #23	NUDT18 (ENSSSCG00000009615) #25	HR (ENSSSCG00000009616) #26	REEP4 (ENSSSCG00000009617) #27	LGI3 (ENSSSCG00000033355) #28	SFTPC (ENSSSCG00000009619) #29	BMP1 (ENSSSCG00000009620) #30	PHYHIP (ENSSSCG00000009621) #31	POLR3D (ENSSSCG00000009622) #32	PIWIL2 (ENSSSCG00000030228) #33	SLC39A14 (ENSSSCG00000032622) #34	PPP3CC (ENSSSCG00000057024) #35	SORBS3 (ENSSSCG00000009626) #36	PDLIM2 (ENSSSCG00000009625) #37	C8orf58 (ENSSSCG00000009627)
Chacoan peccary	MODERN SPECIES	813	C8orf58 (ENSCWAG00000015807)	PDLIM2 (ENSCWAG00000015849) #37	SORBS3 (ENSCWAG00000015893) #36	PPP3CC (ENSCWAG00000016041) #35	SLC39A14 (ENSCWAG00000016115) #34	PIWIL2 (ENSCWAG00000016206) #33	POLR3D (ENSCWAG00000016531) #32	PHYHIP (ENSCWAG00000016574) #31	BMP1 (ENSCWAG00000016662) #30	SFTPC (ENSCWAG00000017012) #29	LGI3 (ENSCWAG00000017168) #28	REEP4 (ENSCWAG00000017280) #27	HR (ENSCWAG00000017341) #26	NUDT18 (ENSCWAG00000017407) #25	FHIP2B (ENSCWAG00000017436) #23	DMTN (ENSCWAG00000017503) #22	FGF17 (ENSCWAG00000017616) #21	NPM2 (ENSCWAG00000017693) #20	XPO7 (ENSCWAG00000017828) #19	DOK2 (ENSCWAG00000018110) #18	GFRA2 (ENSCWAG00000018182) #17	LZTS1 (ENSCWAG00000018404) #16	ATP6V1B2 (ENSCWAG00000018469) #15	SLC18A1 (ENSCWAG00000018534) #14	LPL (ENSCWAG00000018895) #13	ENSCWAG00000018935
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Camelidae	ANCESTRAL SPECIES	47	ENSGT00950000182964.a.b.a	ENSGT00940000158196	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418.r #37	ENSGT00390000000531
Arabian camel	MODERN SPECIES	24	ENSCDRG00005017929	ENSCDRG00005007110	ENSCDRG00005007297	ENSCDRG00005007315	ENSCDRG00005007338	ENSCDRG00005007370	LPL (ENSCDRG00005007450) #13	SLC18A1 (ENSCDRG00005007507) #14	ATP6V1B2 (ENSCDRG00005007709) #15	LZTS1 (ENSCDRG00005007751) #16	GFRA2 (ENSCDRG00005007786) #17	DOK2 (ENSCDRG00005008290) #18	XPO7 (ENSCDRG00005008341) #19	NPM2 (ENSCDRG00005008638) #20	FGF17 (ENSCDRG00005008727) #21	DMTN (ENSCDRG00005008858) #22	FHIP2B (ENSCDRG00005009069) #23	ENSCDRG00005009247	NUDT18 (ENSCDRG00005009316) #25	HR (ENSCDRG00005009395) #26	REEP4 (ENSCDRG00005009491) #27	LGI3 (ENSCDRG00005009611) #28	SFTPC (ENSCDRG00005009742) #29	BMP1 (ENSCDRG00005009906) #30	PHYHIP (ENSCDRG00005013664) #31	POLR3D (ENSCDRG00005013725) #32	ENSCDRG00005013814	PIWIL2 (ENSCDRG00005013863) #33	SLC39A14 (ENSCDRG00005014310) #34	PPP3CC (ENSCDRG00005014493) #35	SORBS3 (ENSCDRG00005014846) #36
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000160228	ENSGT00940000153505.a.b.b.k.a	ENSGT00940000162764.A.a.a	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Blue whale	MODERN SPECIES	17	SEMA4D (ENSBMSG00010005089)	SECISBP2 (ENSBMSG00010005076)	CKS2 (ENSBMSG00010005066)	SHC3 (ENSBMSG00010003082)	S1PR3 (ENSBMSG00010003071)	NXNL2 (ENSBMSG00010003054)	ENSBMSG00010003044	ENSBMSG00010003021	CDK20 (ENSBMSG00010003011)	LZTS1 (ENSBMSG00010003000) #16	GFRA2 (ENSBMSG00010002937) #17	DOK2 (ENSBMSG00010002903) #18	XPO7 (ENSBMSG00010002861) #19	ENSBMSG00010002839 #20	FGF17 (ENSBMSG00010002827) #21	DMTN (ENSBMSG00010002797) #22	FHIP2B (ENSBMSG00010002761) #23	NUDT18 (ENSBMSG00010002749) #25	HR (ENSBMSG00010002713) #26	REEP4 (ENSBMSG00010002672) #27	LGI3 (ENSBMSG00010002646) #28	SFTPC (ENSBMSG00010002602) #29	BMP1 (ENSBMSG00010002570) #30	PHYHIP (ENSBMSG00010002539) #31	POLR3D (ENSBMSG00010002520) #32	PIWIL2 (ENSBMSG00010002469) #33	SLC39A14 (ENSBMSG00010002422) #34	PPP3CC (ENSBMSG00010002372) #35	SORBS3 (ENSBMSG00010002336) #36	PDLIM2 (ENSBMSG00010002288) #37	C8orf58 (ENSBMSG00010002259)
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000160228	ENSGT00950000183043.b.b.h	ENSGT00940000153505.a.b.b.k.a	ENSGT00940000153505.a.b.b.k.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Sperm whale	MODERN SPECIES	1179																DMTN (ENSPCTG00005022485) #22	FAM160B2 (ENSPCTG00005022491) #23	NUDT18 (ENSPCTG00005022493) #25	HR (ENSPCTG00005022498) #26	REEP4 (ENSPCTG00005022501) #27	LGI3 (ENSPCTG00005022502) #28	SFTPC (ENSPCTG00005022504) #29
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000160228	ENSGT00950000183043.b.b.h	ENSGT00940000153505.a.b.b.k.a	ENSGT00940000153505.a.b.b.k.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Dolphin	MODERN SPECIES	1291																DMTN (ENSTTRG00000012028) #22	FHIP2B (ENSTTRG00000012032) #23	NUDT18 (ENSTTRG00000012036) #25	HR (ENSTTRG00000012045) #26	REEP4 (ENSTTRG00000012058) #27	LGI3 (ENSTTRG00000012065) #28	SFTPC (ENSTTRG00000012067) #29
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00940000160228	ENSGT00950000183043.b.b.h.e.b	ENSGT00940000153505.a.b.b.k.a	ENSGT00940000153505.a.b.b.k.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Vaquita	MODERN SPECIES	17	ENSPSNG00000001232	ENSPSNG00000001251	ENSPSNG00000001281	ENSPSNG00000001306	LPL (ENSPSNG00000001326) #13	SLC18A1 (ENSPSNG00000001437) #14	ATP6V1B2 (ENSPSNG00000001576) #15	LZTS1 (ENSPSNG00000001616) #16	ENSPSNG00000001639	ENSPSNG00000001663	GFRA2 (ENSPSNG00000001719) #17	DOK2 (ENSPSNG00000001773) #18	XPO7 (ENSPSNG00000001860) #19	ENSPSNG00000001930 #20	FGF17 (ENSPSNG00000001952) #21	DMTN (ENSPSNG00000002008) #22	FHIP2B (ENSPSNG00000002072) #23	NUDT18 (ENSPSNG00000002145) #25	HR (ENSPSNG00000002189) #26	REEP4 (ENSPSNG00000002252) #27	LGI3 (ENSPSNG00000002304) #28	SFTPC (ENSPSNG00000002339) #29	BMP1 (ENSPSNG00000002415) #30	PHYHIP (ENSPSNG00000002473) #31	POLR3D (ENSPSNG00000002507) #32	PIWIL2 (ENSPSNG00000002593) #33	SLC39A14 (ENSPSNG00000002752) #34	PPP3CC (ENSPSNG00000002828) #35	SORBS3 (ENSPSNG00000002897) #36	PDLIM2 (ENSPSNG00000002972) #37	C8orf58 (ENSPSNG00000003015)
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000160540	ENSGT00940000153947.A.m	ENSGT00550000074872	ENSGT00940000160228	ENSGT00940000153505.a.b.b.k.a	ENSGT00940000153505.a.b.b.k.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Narwhal	MODERN SPECIES	312	ENSMMNG00015012004	ENSMMNG00015011929	ENSMMNG00015011906	ENSMMNG00015011888	LPL (ENSMMNG00015011866) #13	SLC18A1 (ENSMMNG00015011784) #14	ATP6V1B2 (ENSMMNG00015011710) #15	LZTS1 (ENSMMNG00015011684) #16	ENSMMNG00015011659	GFRA2 (ENSMMNG00015021375) #17	DOK2 (ENSMMNG00015021342) #18	ENSMMNG00015021324	XPO7 (ENSMMNG00015021260) #19	NPM2 (ENSMMNG00015021204) #20	FGF17 (ENSMMNG00015021173) #21	DMTN (ENSMMNG00015021090) #22	FHIP2B (ENSMMNG00015020973) #23	NUDT18 (ENSMMNG00015020937) #25	HR (ENSMMNG00015020916) #26	REEP4 (ENSMMNG00015020874) #27	LGI3 (ENSMMNG00015020813) #28	SFTPC (ENSMMNG00015020750) #29	BMP1 (ENSMMNG00015020711) #30	PHYHIP (ENSMMNG00015020680) #31	POLR3D (ENSMMNG00015020653) #32	PIWIL2 (ENSMMNG00015020562) #33	SLC39A14 (ENSMMNG00015020468) #34	PPP3CC (ENSMMNG00015020407) #35	SORBS3 (ENSMMNG00015020324) #36	PDLIM2 (ENSMMNG00015020271) #37	C8orf58 (ENSMMNG00015020198)
Beluga whale	MODERN SPECIES	78	ENSDLEG00000018433	ENSDLEG00000018428	SPTLC1 (ENSDLEG00000018393)	ENSDLEG00000018357	ENSDLEG00000018350	ENSDLEG00000018324	LPL (ENSDLEG00000018314) #13	SLC18A1 (ENSDLEG00000018286) #14	ATP6V1B2 (ENSDLEG00000018278) #15	LZTS1 (ENSDLEG00000018270) #16	GFRA2 (ENSDLEG00000018245) #17	DOK2 (ENSDLEG00000018229) #18	XPO7 (ENSDLEG00000018185) #19	NPM2 (ENSDLEG00000018172) #20	FGF17 (ENSDLEG00000018156) #21	DMTN (ENSDLEG00000018117) #22	FAM160B2 (ENSDLEG00000018043) #23	NUDT18 (ENSDLEG00000018025) #25	HR (ENSDLEG00000017998) #26	REEP4 (ENSDLEG00000017975) #27	LGI3 (ENSDLEG00000017959) #28	SFTPC (ENSDLEG00000017925) #29	BMP1 (ENSDLEG00000017889) #30	PHYHIP (ENSDLEG00000017875) #31	POLR3D (ENSDLEG00000017852) #32	PIWIL2 (ENSDLEG00000017759) #33	SLC39A14 (ENSDLEG00000017693) #34	PPP3CC (ENSDLEG00000017652) #35	SORBS3 (ENSDLEG00000017622) #36	PDLIM2 (ENSDLEG00000017580) #37	C8orf58 (ENSDLEG00000017501)
Pecora	ANCESTRAL SPECIES	36							ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Percora_a	ANCESTRAL SPECIES	24	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00940000157345.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00970000197193	ENSGT00940000160558 #36
Bovidae	ANCESTRAL SPECIES	14	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a.v	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00970000197193	ENSGT00940000160558 #36
Caprinae	ANCESTRAL SPECIES	14	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a.u.a	ENSGT00940000157345.a	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020000666	ENSOARG00020000635	ENSOARG00020000588	LPL (ENSOARG00020000574) #13	SLC18A1 (ENSOARG00020000239) #14	ATP6V1B2 (ENSOARG00020000155) #15	LZTS1 (ENSOARG00020000131) #16	ENSOARG00020000094	ENSOARG00020023808	ENSOARG00020023803	GFRA2 (ENSOARG00020023673) #17	DOK2 (ENSOARG00020023652) #18	XPO7 (ENSOARG00020023445) #19	ENSOARG00020023411 #20	FGF17 (ENSOARG00020023369) #21	DMTN (ENSOARG00020022707) #22	FHIP2B (ENSOARG00020022611) #23	HR (ENSOARG00020022176) #26	REEP4 (ENSOARG00020022055) #27	LGI3 (ENSOARG00020021936) #28	SFTPC (ENSOARG00020021857) #29	BMP1 (ENSOARG00020021570) #30	PHYHIP (ENSOARG00020021526) #31	POLR3D (ENSOARG00020021425) #32	PIWIL2 (ENSOARG00020021105) #33	SLC39A14 (ENSOARG00020020996) #34	ENSOARG00020020965	PPP3CC (ENSOARG00020020737) #35	SORBS3 (ENSOARG00020020583) #36	PDLIM2 (ENSOARG00020020511) #37	C8orf58 (ENSOARG00020020420)
Goat	MODERN SPECIES	27	ENSCHIG00000015109	ENSCHIG00000008314	ENSCHIG00000023371	ENSCHIG00000017968	LPL (ENSCHIG00000025623) #13	SLC18A1 (ENSCHIG00000021575) #14	ATP6V1B2 (ENSCHIG00000016793) #15	LZTS1 (ENSCHIG00000022362) #16	ENSCHIG00000025219	GFRA2 (ENSCHIG00000016374) #17	ENSCHIG00000025910	DOK2 (ENSCHIG00000021822) #18	XPO7 (ENSCHIG00000016714) #19	NPM2 (ENSCHIG00000026056) #20	FGF17 (ENSCHIG00000026068) #21	DMTN (ENSCHIG00000019052) #22	FHIP2B (ENSCHIG00000020971) #23	NUDT18 (ENSCHIG00000025564) #25	HR (ENSCHIG00000024758) #26	REEP4 (ENSCHIG00000025331) #27	LGI3 (ENSCHIG00000025450) #28	SFTPC (ENSCHIG00000018635) #29	BMP1 (ENSCHIG00000023198) #30	PHYHIP (ENSCHIG00000011107) #31	POLR3D (ENSCHIG00000012279) #32	PIWIL2 (ENSCHIG00000022958) #33	SLC39A14 (ENSCHIG00000023885) #34	PPP3CC (ENSCHIG00000014803) #35	SORBS3 (ENSCHIG00000003972) #36	PDLIM2 (ENSCHIG00000013684) #37	CCAR2 (ENSCHIG00000007510)
Bovinae	ANCESTRAL SPECIES	14	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a.u.a	ENSGT00940000157345.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00970000197193	ENSGT00940000160558 #36
Bos	ANCESTRAL SPECIES	10	ENSGT00940000157688	ENSGT00950000182992.a.a.u.a	ENSGT00940000157345.a	ENSGT00390000005569.x.a.a.b.c.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00970000197193	ENSGT00940000160558 #36
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000157345.a.b	ENSGT00950000182992.a.a.u.b	ENSGT00390000005569.x.a.a.b.c.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00390000018141.i.a.b.b.b.a.b.a.b.a.b.b.b.b	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00970000197193	ENSGT00940000160558 #36	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.a.b.a.b
Hybrid Bos Indicus	MODERN SPECIES	27	LPL (ENSBIXG00005028031) #13	ENSBIXG00005027982	SLC18A1 (ENSBIXG00005027964) #14	ATP6V1B2 (ENSBIXG00005027918) #15	LZTS1 (ENSBIXG00005027830) #16	ENSBIXG00005027774	ENSBIXG00005027763	ENSBIXG00005027749	ENSBIXG00005027723	ENSBIXG00005004760	GFRA2 (ENSBIXG00005027647) #17	DOK2 (ENSBIXG00005004736) #18	XPO7 (ENSBIXG00005027512) #19	NPM2 (ENSBIXG00005027463) #20	FGF17 (ENSBIXG00005027428) #21	DMTN (ENSBIXG00005027387) #22	FHIP2B (ENSBIXG00005004662) #23	NUDT18 (ENSBIXG00005027121) #25	HR (ENSBIXG00005027087) #26	REEP4 (ENSBIXG00005027035) #27	LGI3 (ENSBIXG00005004632) #28	SFTPC (ENSBIXG00005004620) #29	BMP1 (ENSBIXG00005026935) #30	PHYHIP (ENSBIXG00005026873) #31	POLR3D (ENSBIXG00005026850) #32	PIWIL2 (ENSBIXG00005026814) #33	SLC39A14 (ENSBIXG00005026763) #34	ENSBIXG00005026647	PPP3CC (ENSBIXG00005007253) #35	ENSBIXG00005026595	SORBS3 (ENSBIXG00005007094) #36
Cow	MODERN SPECIES	27	ENSBTAG00000035709	ENSBTAG00000050097	ENSBTAG00000047647	CNTNAP3 (ENSBTAG00000006446)	ENSBTAG00000055232	LPL (ENSBTAG00000012855) #13	ENSBTAG00000050508	SLC18A1 (ENSBTAG00000020788) #14	ATP6V1B2 (ENSBTAG00000018646) #15	LZTS1 (ENSBTAG00000000841) #16	GFRA2 (ENSBTAG00000020665) #17	DOK2 (ENSBTAG00000003341) #18	XPO7 (ENSBTAG00000047628) #19	NPM2 (ENSBTAG00000046918) #20	FGF17 (ENSBTAG00000046951) #21	DMTN (ENSBTAG00000045887) #22	FHIP2B (ENSBTAG00000014361) #23	NUDT18 (ENSBTAG00000003483) #25	HR (ENSBTAG00000012036) #26	REEP4 (ENSBTAG00000009504) #27	LGI3 (ENSBTAG00000004578) #28	SFTPC (ENSBTAG00000012560) #29	BMP1 (ENSBTAG00000000917) #30	PHYHIP (ENSBTAG00000015757) #31	POLR3D (ENSBTAG00000010036) #32	PIWIL2 (ENSBTAG00000015835) #33	SLC39A14 (ENSBTAG00000019225) #34	PPP3CC (ENSBTAG00000020133) #35	ENSBTAG00000052118	SORBS3 (ENSBTAG00000014401) #36	ENSBTAG00000054318
Bos_a	ANCESTRAL SPECIES	20				ENSGT00390000005569.x.a.a.b.c.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00960000190195	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.a.b.a.b
Domestic yak	MODERN SPECIES	26	ENSBGRG00000005772	ENSBGRG00000005789	ENSBGRG00000005820	ENSBGRG00000005839	LPL (ENSBGRG00000005883) #13	SLC18A1 (ENSBGRG00000005970) #14	ATP6V1B2 (ENSBGRG00000006044) #15	LZTS1 (ENSBGRG00000006103) #16	ENSBGRG00000006145	GFRA2 (ENSBGRG00000006183) #17	ENSBGRG00000006448	DOK2 (ENSBGRG00000006461) #18	ENSBGRG00000006491	XPO7 (ENSBGRG00000006557) #19	ENSBGRG00000007546 #20	DMTN (ENSBGRG00000007906) #22	FHIP2B (ENSBGRG00000008409) #23	NUDT18 (ENSBGRG00000008644) #25	HR (ENSBGRG00000008707) #26	ENSBGRG00000009214 #27	LGI3 (ENSBGRG00000009374) #28	SFTPC (ENSBGRG00000009528) #29	BMP1 (ENSBGRG00000009629) #30	PHYHIP (ENSBGRG00000009872) #31	POLR3D (ENSBGRG00000009942) #32	PIWIL2 (ENSBGRG00000010031) #33	SLC39A14 (ENSBGRG00000010379) #34	ENSBGRG00000010491	ENSBGRG00000010503	PPP3CC (ENSBGRG00000010542) #35	SORBS3 (ENSBGRG00000011774) #36
Wild yak	MODERN SPECIES	711										ENSBMUG00000012963	GFRA2 (ENSBMUG00000013030) #17	DOK2 (ENSBMUG00000013060) #18	XPO7 (ENSBMUG00000013112) #19	ENSBMUG00000013150 #20	FGF17 (ENSBMUG00000013164) #21	DMTN (ENSBMUG00000013290) #22	FHIP2B (ENSBMUG00000013336) #23	NUDT18 (ENSBMUG00000013352) #25	HR (ENSBMUG00000013431) #26	REEP4 (ENSBMUG00000013469) #27	LGI3 (ENSBMUG00000013504) #28	SFTPC (ENSBMUG00000013531) #29	BMP1 (ENSBMUG00000013561) #30	PHYHIP (ENSBMUG00000013577) #31	POLR3D (ENSBMUG00000013605) #32	PIWIL2 (ENSBMUG00000013694) #33	SLC39A14 (ENSBMUG00000013789) #34	ENSBMUG00000013801	PPP3CC (ENSBMUG00000013849) #35	ENSBMUG00000013918 #36	PDLIM2 (ENSBMUG00000013940) #37
American bison	MODERN SPECIES	3134			ENSBBBG00000003726	ENSBBBG00000003722	ENSBBBG00000014986	LPL (ENSBBBG00000014982) #13	SLC18A1 (ENSBBBG00000014957) #14	ATP6V1B2 (ENSBBBG00000000816) #15	LZTS1 (ENSBBBG00000000835) #16	ENSBBBG00000000857	GFRA2 (ENSBBBG00000000874) #17	DOK2 (ENSBBBG00000000963) #18	XPO7 (ENSBBBG00000000984) #19	ENSBBBG00000001063 #20	FGF17 (ENSBBBG00000001081) #21	DMTN (ENSBBBG00000001134) #22	ENSBBBG00000014717 #23	NUDT18 (ENSBBBG00000003572) #25	HR (ENSBBBG00000014703) #26	REEP4 (ENSBBBG00000014642) #27	LGI3 (ENSBBBG00000014605) #28	SFTPC (ENSBBBG00000014583) #29	BMP1 (ENSBBBG00000007131) #30	PHYHIP (ENSBBBG00000003417) #31	POLR3D (ENSBBBG00000003413) #32	PIWIL2 (ENSBBBG00000014530) #33	SLC39A14 (ENSBBBG00000014435) #34	ENSBBBG00000003310	PPP3CC (ENSBBBG00000003305) #35	SORBS3 (ENSBBBG00000014322) #36	PDLIM2 (ENSBBBG00000014228) #37
Siberian musk deer	MODERN SPECIES	327												DOK2 (ENSMMSG00000010558) #18	XPO7 (ENSMMSG00000010600) #19	ENSMMSG00000010856 #20	FGF17 (ENSMMSG00000010894) #21	DMTN (ENSMMSG00000010959) #22	FHIP2B (ENSMMSG00000011217) #23	NUDT18 (ENSMMSG00000011330) #25	HR (ENSMMSG00000011355) #26	REEP4 (ENSMMSG00000011428) #27	LGI3 (ENSMMSG00000011515) #28	SFTPC (ENSMMSG00000011604) #29	BMP1 (ENSMMSG00000011656) #30	PHYHIP (ENSMMSG00000011733) #31	ENSMMSG00000011764 #32	PIWIL2 (ENSMMSG00000011843) #33	ENSMMSG00000012076	SLC39A14 (ENSMMSG00000012106) #34	ENSMMSG00000012176	PPP3CC (ENSMMSG00000012197) #35	ENSMMSG00000012271
Yarkand deer	MODERN SPECIES	7							ENSCHYG00000018162	LPL (ENSCHYG00000018192) #13	SLC18A1 (ENSCHYG00000018318) #14	ATP6V1B2 (ENSCHYG00000019196) #15	LZTS1 (ENSCHYG00000019365) #16	GFRA2 (ENSCHYG00000019452) #17	DOK2 (ENSCHYG00000019715) #18	XPO7 (ENSCHYG00000019861) #19	ENSCHYG00000020884 #20	DMTN (ENSCHYG00000021222) #22	FHIP2B (ENSCHYG00000021666) #23	ENSCHYG00000021878 #24	NUDT18 (ENSCHYG00000021938) #25	HR (ENSCHYG00000021972) #26	SFTPC (ENSCHYG00000022183) #29	REEP4 (ENSCHYG00000022326) #27	LGI3 (ENSCHYG00000022421) #28	BMP1 (ENSCHYG00000022502) #30	PHYHIP (ENSCHYG00000022914) #31	PIWIL2 (ENSCHYG00000023005) #33	SLC39A14 (ENSCHYG00000023550) #34	PPP3CC (ENSCHYG00000023801) #35	SORBS3 (ENSCHYG00000024528) #36	PDLIM2 (ENSCHYG00000024701) #37	C8orf58 (ENSCHYG00000024797)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00680000101436 #9	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36
Carnivora	ANCESTRAL SPECIES	5	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00680000101436 #9	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Felidae	ANCESTRAL SPECIES	4	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Panthera	ANCESTRAL SPECIES	5	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
leopard	MODERN SPECIES	49							SLC18A1 (ENSPPRG00000006173) #14	ATP6V1B2 (ENSPPRG00000006510) #15	LZTS1 (ENSPPRG00000007235) #16	RPL39L (ENSPPRG00000014890)	GFRA2 (ENSPPRG00000010497) #17	DOK2 (ENSPPRG00000010786) #18	XPO7 (ENSPPRG00000012647) #19	NPM2 (ENSPPRG00000022157) #20	FGF17 (ENSPPRG00000023654) #21	DMTN (ENSPPRG00000006498) #22	FHIP2B (ENSPPRG00000008179) #23	NUDT18 (ENSPPRG00000009203) #25	HR (ENSPPRG00000011318) #26	REEP4 (ENSPPRG00000011897) #27	LGI3 (ENSPPRG00000012959) #28	SFTPC (ENSPPRG00000014467) #29	BMP1 (ENSPPRG00000023468) #30	PHYHIP (ENSPPRG00000023170) #31	POLR3D (ENSPPRG00000022827) #32	PIWIL2 (ENSPPRG00000000518) #33	SLC39A14 (ENSPPRG00000000738) #34	PPP3CC (ENSPPRG00000003854) #35	SORBS3 (ENSPPRG00000006181) #36	PDLIM2 (ENSPPRG00000009469) #37	C8orf58 (ENSPPRG00000012102)
lion	MODERN SPECIES	4	HGSNAT (ENSPLOG00000001276)	INTS10 (ENSPLOG00000001243) #12	CSGALNACT1 (ENSPLOG00000001227) #11	SH2D4A (ENSPLOG00000001206) #10	PSD3 (ENSPLOG00000001112) #8	ENSPLOG00000001059 #7	SLC18A1 (ENSPLOG00000000899) #14	ATP6V1B2 (ENSPLOG00000000762) #15	LZTS1 (ENSPLOG00000000739) #16	ENSPLOG00000000716	GFRA2 (ENSPLOG00000000666) #17	DOK2 (ENSPLOG00000000612) #18	XPO7 (ENSPLOG00000000524) #19	NPM2 (ENSPLOG00000000449) #20	FGF17 (ENSPLOG00000000423) #21	DMTN (ENSPLOG00000000304) #22	FHIP2B (ENSPLOG00000000224) #23	ENSPLOG00000004612 #24	NUDT18 (ENSPLOG00000004601) #25	HR (ENSPLOG00000004589) #26	REEP4 (ENSPLOG00000004562) #27	LGI3 (ENSPLOG00000004530) #28	SFTPC (ENSPLOG00000004504) #29	BMP1 (ENSPLOG00000004473) #30	PHYHIP (ENSPLOG00000004438) #31	POLR3D (ENSPLOG00000004409) #32	PIWIL2 (ENSPLOG00000004359) #33	SLC39A14 (ENSPLOG00000004308) #34	PPP3CC (ENSPLOG00000004219) #35	SORBS3 (ENSPLOG00000004161) #36	PDLIM2 (ENSPLOG00000004126) #37
Tiger	MODERN SPECIES	446						LPL (ENSPTIG00000010158) #13	SLC18A1 (ENSPTIG00000010654) #14	ATP6V1B2 (ENSPTIG00000017651) #15	LZTS1 (ENSPTIG00000018077) #16	RPL39L (ENSPTIG00000000475)	GFRA2 (ENSPTIG00000019476) #17	DOK2 (ENSPTIG00000005334) #18	XPO7 (ENSPTIG00000006201) #19	NPM2 (ENSPTIG00000011553) #20	FGF17 (ENSPTIG00000017095) #21	DMTN (ENSPTIG00000018352) #22	FHIP2B (ENSPTIG00000013236) #23	ENSPTIG00000014358 #24	NUDT18 (ENSPTIG00000014811) #25	HR (ENSPTIG00000015103) #26	REEP4 (ENSPTIG00000017415) #27	LGI3 (ENSPTIG00000018591) #28	SFTPC (ENSPTIG00000000868) #29	BMP1 (ENSPTIG00000008141) #30	PHYHIP (ENSPTIG00000017512) #31	POLR3D (ENSPTIG00000018239) #32	PIWIL2 (ENSPTIG00000019334) #33	SLC39A14 (ENSPTIG00000021976) #34	PPP3CC (ENSPTIG00000022097) #35	SORBS3 (ENSPTIG00000007552) #36	PDLIM2 (ENSPTIG00000010673) #37
Cat	MODERN SPECIES	235	CSGALNACT1 (ENSFCAG00000013402) #11	SH2D4A (ENSFCAG00000026624) #10	PSD3 (ENSFCAG00000033051) #8	ENSFCAG00000023846 #7	LPL (ENSFCAG00000012161) #13	SLC18A1 (ENSFCAG00000011693) #14	ATP6V1B2 (ENSFCAG00000013380) #15	LZTS1 (ENSFCAG00000030368) #16	ENSFCAG00000044333	ENSFCAG00000053248	GFRA2 (ENSFCAG00000008963) #17	DOK2 (ENSFCAG00000008964) #18	XPO7 (ENSFCAG00000008965) #19	NPM2 (ENSFCAG00000045117) #20	FGF17 (ENSFCAG00000005496) #21	DMTN (ENSFCAG00000012976) #22	FHIP2B (ENSFCAG00000005001) #23	ENSFCAG00000035285 #24	NUDT18 (ENSFCAG00000024534) #25	HR (ENSFCAG00000012978) #26	REEP4 (ENSFCAG00000041047) #27	LGI3 (ENSFCAG00000005286) #28	SFTPC (ENSFCAG00000004717) #29	BMP1 (ENSFCAG00000012979) #30	PHYHIP (ENSFCAG00000029013) #31	PIWIL2 (ENSFCAG00000012981) #33	SLC39A14 (ENSFCAG00000001452) #34	PPP3CC (ENSFCAG00000030895) #35	SORBS3 (ENSFCAG00000005663) #36	PDLIM2 (ENSFCAG00000005664) #37	CB1H8orf58 (ENSFCAG00000024843)
Caniformia	ANCESTRAL SPECIES	7						ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Canidae	ANCESTRAL SPECIES	31		ENSGT00390000017888	ENSGT00390000004915.b	ENSGT00940000163095.a	ENSGT00940000154559.C	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418.b #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Red fox	MODERN SPECIES	67										ENSVVUG00000010683	GFRA2 (ENSVVUG00000010642) #17	DOK2 (ENSVVUG00000010601) #18	XPO7 (ENSVVUG00000007346) #19	ENSVVUG00000007256 #20	FGF17 (ENSVVUG00000007248) #21	DMTN (ENSVVUG00000006438) #22	FAM160B2 (ENSVVUG00000006408) #23	NUDT18 (ENSVVUG00000006404) #25	HR (ENSVVUG00000006393) #26	REEP4 (ENSVVUG00000006388) #27	LGI3 (ENSVVUG00000006376) #28	SFTPC (ENSVVUG00000006345) #29	BMP1 (ENSVVUG00000005326) #30	PHYHIP (ENSVVUG00000005294) #31	POLR3D (ENSVVUG00000005290) #32	PIWIL2 (ENSVVUG00000005239) #33	SLC39A14 (ENSVVUG00000005212) #34	PPP3CC (ENSVVUG00000005197) #35	SORBS3 (ENSVVUG00000005170) #36	PDLIM2 (ENSVVUG00000005161) #37	CUNH8orf58 (ENSVVUG00000005160)
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00590000083134.a.b	ENSGT00390000017888	ENSGT00390000004915.b	ENSGT00940000163095.a	ENSGT00940000154559.C	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418.b #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Dog	MODERN SPECIES	17	ENSCAFG00845014653	FBXO25 (ENSCAFG00845014586)	ENSCAFG00845029573	ENSCAFG00845029507	C8H14orf119 (ENSCAFG00845029484)	LPL (ENSCAFG00845029377) #13	SLC18A1 (ENSCAFG00845029212) #14	ATP6V1B2 (ENSCAFG00845029095) #15	LZTS1 (ENSCAFG00845029013) #16	ENSCAFG00845028943	GFRA2 (ENSCAFG00845028779) #17	DOK2 (ENSCAFG00845028659) #18	XPO7 (ENSCAFG00845028066) #19	NPM2 (ENSCAFG00845027762) #20	FGF17 (ENSCAFG00845027641) #21	DMTN (ENSCAFG00845027302) #22	FHIP2B (ENSCAFG00845027044) #23	NUDT18 (ENSCAFG00845026962) #25	HR (ENSCAFG00845026480) #26	REEP4 (ENSCAFG00845026054) #27	LGI3 (ENSCAFG00845025793) #28	SFTPC (ENSCAFG00845025534) #29	BMP1 (ENSCAFG00845025214) #30	PHYHIP (ENSCAFG00845025085) #31	POLR3D (ENSCAFG00845024956) #32	PIWIL2 (ENSCAFG00845024208) #33	SLC39A14 (ENSCAFG00845023697) #34	PPP3CC (ENSCAFG00845022916) #35	SORBS3 (ENSCAFG00845020887) #36	PDLIM2 (ENSCAFG00845020425) #37	C8orf58 (ENSCAFG00845020195)
Dingo	MODERN SPECIES	304	TDRP (ENSCAFG00020018532)	FBXO25 (ENSCAFG00020018524)	ENSCAFG00020018515	ZNF596 (ENSCAFG00020018508)	LPL (ENSCAFG00020018506) #13	ENSCAFG00020018495	SLC18A1 (ENSCAFG00020018469) #14	ATP6V1B2 (ENSCAFG00020018462) #15	LZTS1 (ENSCAFG00020018457) #16	ENSCAFG00020018445	GFRA2 (ENSCAFG00020018439) #17	DOK2 (ENSCAFG00020018434) #18	XPO7 (ENSCAFG00020017954) #19	ENSCAFG00020017926 #20	FGF17 (ENSCAFG00020017919) #21	DMTN (ENSCAFG00020017901) #22	FHIP2B (ENSCAFG00020017889) #23	NUDT18 (ENSCAFG00020017886) #25	HR (ENSCAFG00020017876) #26	REEP4 (ENSCAFG00020017868) #27	LGI3 (ENSCAFG00020017857) #28	SFTPC (ENSCAFG00020017847) #29	BMP1 (ENSCAFG00020013181) #30	PHYHIP (ENSCAFG00020013035) #31	POLR3D (ENSCAFG00020013027) #32	PIWIL2 (ENSCAFG00020012983) #33	SLC39A14 (ENSCAFG00020012975) #34	PPP3CC (ENSCAFG00020012963) #35	SORBS3 (ENSCAFG00020012942) #36	PDLIM2 (ENSCAFG00020012938) #37	C8orf58 (ENSCAFG00020012932)
Caniformia_b	ANCESTRAL SPECIES	5							ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Mustelinae	ANCESTRAL SPECIES	104								ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
American mink	MODERN SPECIES	232											GFRA2 (ENSNVIG00000021644) #17	DOK2 (ENSNVIG00000021708) #18	XPO7 (ENSNVIG00000021720) #19	ENSNVIG00000021778 #20	FGF17 (ENSNVIG00000021804) #21	DMTN (ENSNVIG00000021828) #22	FHIP2B (ENSNVIG00000022065) #23	ENSNVIG00000022085 #24	NUDT18 (ENSNVIG00000022088) #25	HR (ENSNVIG00000022103) #26	REEP4 (ENSNVIG00000022169) #27	LGI3 (ENSNVIG00000022182) #28	SFTPC (ENSNVIG00000022200) #29	BMP1 (ENSNVIG00000022366) #30	PHYHIP (ENSNVIG00000023396) #31	RPC4 (ENSNVIG00000023399) #32	PIWIL2 (ENSNVIG00000023401) #33	SLC39A14 (ENSNVIG00000023412) #34	PPP3CC (ENSNVIG00000023435) #35	VINEX (ENSNVIG00000023464) #36	PDLIM2 (ENSNVIG00000023477) #37
Ferret	MODERN SPECIES	256							SLC18A1 (ENSMPUG00000004281) #14	ATP6V1B2 (ENSMPUG00000004276) #15	LZTS1 (ENSMPUG00000004268) #16	ENSMPUG00000018764	GFRA2 (ENSMPUG00000004261) #17	DOK2 (ENSMPUG00000004250) #18	ENSMPUG00000004061 #19	NPM2 (ENSMPUG00000004012) #20	FGF17 (ENSMPUG00000004006) #21	DMTN (ENSMPUG00000003994) #22	FHIP2B (ENSMPUG00000003986) #23	NUDT18 (ENSMPUG00000003980) #25	HR (ENSMPUG00000003967) #26	REEP4 (ENSMPUG00000003921) #27	LGI3 (ENSMPUG00000003913) #28	SFTPC (ENSMPUG00000003875) #29	BMP1 (ENSMPUG00000003668) #30	PHYHIP (ENSMPUG00000003661) #31	POLR3D (ENSMPUG00000003653) #32	PIWIL2 (ENSMPUG00000003645) #33	SLC39A14 (ENSMPUG00000003640) #34	PPP3CC (ENSMPUG00000003630) #35	SORBS3 (ENSMPUG00000003610) #36	PDLIM2 (ENSMPUG00000003539) #37	C8orf58 (ENSMPUG00000003516)
Ursidae	ANCESTRAL SPECIES	50							ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Giant Panda	MODERN SPECIES	15	PTK2B (ENSAMEG00000000174)	ENSAMEG00000000207	ENSAMEG00000000209	ENSAMEG00000026433	ENSAMEG00000031090	ENSAMEG00000005638	ENSAMEG00000000943 #13	SLC18A1 (ENSAMEG00000012721) #14	ATP6V1B2 (ENSAMEG00000012668) #15	LZTS1 (ENSAMEG00000012664) #16	GFRA2 (ENSAMEG00000003691) #17	DOK2 (ENSAMEG00000003671) #18	XPO7 (ENSAMEG00000003555) #19	NPM2 (ENSAMEG00000003542) #20	FGF17 (ENSAMEG00000003531) #21	DMTN (ENSAMEG00000003459) #22	FHIP2B (ENSAMEG00000003424) #23	NUDT18 (ENSAMEG00000003416) #25	HR (ENSAMEG00000003382) #26	REEP4 (ENSAMEG00000003360) #27	LGI3 (ENSAMEG00000029058) #28	SFTPC (ENSAMEG00000003331) #29	BMP1 (ENSAMEG00000003243) #30	PHYHIP (ENSAMEG00000028003) #31	POLR3D (ENSAMEG00000003221) #32	PIWIL2 (ENSAMEG00000003171) #33	SLC39A14 (ENSAMEG00000003151) #34	PPP3CC (ENSAMEG00000003134) #35	PDLIM2 (ENSAMEG00000003082) #37	C8orf58 (ENSAMEG00000003077)	CCAR2 (ENSAMEG00000003044)
Ursus	ANCESTRAL SPECIES	126											ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00910000146927 #24	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Polar bear	MODERN SPECIES	242												GFRA2 (ENSUMAG00000006969) #17	DOK2 (ENSUMAG00000006961) #18	XPO7 (ENSUMAG00000006951) #19	FGF17 (ENSUMAG00000006942) #21	DMTN (ENSUMAG00000006849) #22	FHIP2B (ENSUMAG00000006785) #23	ENSUMAG00000006781 #24	NUDT18 (ENSUMAG00000006779) #25	HR (ENSUMAG00000006422) #26	REEP4 (ENSUMAG00000006361) #27	LGI3 (ENSUMAG00000006351) #28	SFTPC (ENSUMAG00000006331) #29	BMP1 (ENSUMAG00000005269) #30	PHYHIP (ENSUMAG00000005113) #31	POLR3D (ENSUMAG00000005099) #32	PIWIL2 (ENSUMAG00000005016) #33	SLC39A14 (ENSUMAG00000005010) #34	PPP3CC (ENSUMAG00000004979) #35	SORBS3 (ENSUMAG00000004804) #36	PDLIM2 (ENSUMAG00000004787) #37
American black bear	MODERN SPECIES	1710												DOK2 (ENSUAMG00000006327) #18	XPO7 (ENSUAMG00000003008) #19	ENSUAMG00000002809 #20	FGF17 (ENSUAMG00000002793) #21	DMTN (ENSUAMG00000002772) #22	ENSUAMG00000002741 #23
Laurasiatheria_c	ANCESTRAL SPECIES	8							ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Chiroptera	ANCESTRAL SPECIES	64								ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Microchiroptera	ANCESTRAL SPECIES	57								ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Microbat	MODERN SPECIES	1265																DMTN (ENSMLUG00000002049) #22	FHIP2B (ENSMLUG00000002058) #23	NUDT18 (ENSMLUG00000002066) #25	HR (ENSMLUG00000002079) #26	REEP4 (ENSMLUG00000022968) #27	LGI3 (ENSMLUG00000029448) #28	SFTPC (ENSMLUG00000002090) #29	BMP1 (ENSMLUG00000002093) #30	PHYHIP (ENSMLUG00000002104) #31	POLR3D (ENSMLUG00000002109) #32	PIWIL2 (ENSMLUG00000002115) #33	SLC39A14 (ENSMLUG00000010611) #34	PPP3CC (ENSMLUG00000007839) #35	SORBS3 (ENSMLUG00000007889) #36	PDLIM2 (ENSMLUG00000007918) #37	C8orf58 (ENSMLUG00000026541)
Greater horseshoe bat	MODERN SPECIES	9	TRIM75 (ENSRFEG00010014895)	ENSRFEG00010014876	ENSRFEG00010014823	ENSRFEG00010014772	ENSRFEG00010014714	SMIM31 (ENSRFEG00010014668)	SLC18A1 (ENSRFEG00010014560) #14	ENSRFEG00010014532	ATP6V1B2 (ENSRFEG00010013734) #15	LZTS1 (ENSRFEG00010013630) #16	GFRA2 (ENSRFEG00010013383) #17	DOK2 (ENSRFEG00010013330) #18	XPO7 (ENSRFEG00010012873) #19	NPM2 (ENSRFEG00010012630) #20	FGF17 (ENSRFEG00010012478) #21	DMTN (ENSRFEG00010012301) #22	ENSRFEG00010012231 #24	FHIP2B (ENSRFEG00010012158) #23	NUDT18 (ENSRFEG00010012081) #25	HR (ENSRFEG00010011989) #26	REEP4 (ENSRFEG00010011723) #27	LGI3 (ENSRFEG00010011663) #28	SFTPC (ENSRFEG00010011568) #29	BMP1 (ENSRFEG00010011473) #30	PHYHIP (ENSRFEG00010011436) #31	POLR3D (ENSRFEG00010011381) #32	PIWIL2 (ENSRFEG00010010461) #33	SLC39A14 (ENSRFEG00010010103) #34	PPP3CC (ENSRFEG00010009663) #35	SORBS3 (ENSRFEG00010009553) #36	ENSRFEG00010009418 #37
Megabat	MODERN SPECIES	1628												DOK2 (ENSPVAG00000009846) #18	XPO7 (ENSPVAG00000009847) #19	NPM2 (ENSPVAG00000009848) #20	FGF17 (ENSPVAG00000009849) #21	DMTN (ENSPVAG00000009850) #22	FHIP2B (ENSPVAG00000009854) #23	NUDT18 (ENSPVAG00000009857) #25	HR (ENSPVAG00000009862) #26	REEP4 (ENSPVAG00000009864) #27	LGI3 (ENSPVAG00000009867) #28	SFTPC (ENSPVAG00000009868) #29	BMP1 (ENSPVAG00000009870) #30	PHYHIP (ENSPVAG00000009872) #31	POLR3D (ENSPVAG00000009873) #32	PIWIL2 (ENSPVAG00000009878) #33	SLC39A14 (ENSPVAG00000009882) #34
Equus	ANCESTRAL SPECIES	24							ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT01090000263470	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Horse	MODERN SPECIES	11	PLEKHN1 (ENSECAG00000022981)	KLHL17 (ENSECAG00000023217)	NOC2L (ENSECAG00000023976)	SAMD11 (ENSECAG00000007281)	ENSECAG00000058610	LPL (ENSECAG00000010145) #13	SLC18A1 (ENSECAG00000013343) #14	ATP6V1B2 (ENSECAG00000016500) #15	LZTS1 (ENSECAG00000020112) #16	ENSECAG00000047927	GFRA2 (ENSECAG00000020585) #17	DOK2 (ENSECAG00000023145) #18	XPO7 (ENSECAG00000023304) #19	NPM2 (ENSECAG00000024685) #20	FGF17 (ENSECAG00000024690) #21	DMTN (ENSECAG00000000791) #22	FHIP2B (ENSECAG00000009459) #23	NUDT18 (ENSECAG00000010645) #25	HR (ENSECAG00000010917) #26	REEP4 (ENSECAG00000015249) #27	LGI3 (ENSECAG00000020126) #28	SFTPC (ENSECAG00000021053) #29	BMP1 (ENSECAG00000021675) #30	PHYHIP (ENSECAG00000025002) #31	ENSECAG00000025090 #32	PIWIL2 (ENSECAG00000025128) #33	SLC39A14 (ENSECAG00000008287) #34	PPP3CC (ENSECAG00000009540) #35	SORBS3 (ENSECAG00000017281) #36	PDLIM2 (ENSECAG00000019910) #37	C2H8orf58 (ENSECAG00000020618)
Donkey	MODERN SPECIES	22					ENSEASG00005029137	ENSEASG00005026691	ENSEASG00005018875 #13	SLC18A1 (ENSEASG00005018869) #14	ATP6V1B2 (ENSEASG00005018867) #15	LZTS1 (ENSEASG00005018865) #16	GFRA2 (ENSEASG00005018862) #17	DOK2 (ENSEASG00005026291) #18	XPO7 (ENSEASG00005018857) #19	NPM2 (ENSEASG00005018856) #20	FGF17 (ENSEASG00005026523) #21	DMTN (ENSEASG00005037455) #22	FHIP2B (ENSEASG00005018846) #23	NUDT18 (ENSEASG00005034487) #25	HR (ENSEASG00005018840) #26	HRURF (ENSEASG00005024739)	REEP4 (ENSEASG00005018837) #27	LGI3 (ENSEASG00005018833) #28	ENSEASG00005018830 #29	BMP1 (ENSEASG00005018828) #30	PHYHIP (ENSEASG00005030820) #31	POLR3D (ENSEASG00005018824) #32	PIWIL2 (ENSEASG00005018819) #33	SLC39A14 (ENSEASG00005018817) #34	PPP3CC (ENSEASG00005018811) #35	SORBS3 (ENSEASG00005018804) #36	PDLIM2 (ENSEASG00005018800) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b #22
Hedgehog	MODERN SPECIES	5228																ENSEEUG00000006910 #22
Common shrew	MODERN SPECIES	4039																ENSSARG00000012233 #22
Atlantogenata	ANCESTRAL SPECIES	23	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Xenarthra	ANCESTRAL SPECIES	135													ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00390000000531	ENSGT00530000063672.b	ENSGT00950000182882.B
Armadillo	MODERN SPECIES	1711													DOK2 (ENSDNOG00000044342) #18	XPO7 (ENSDNOG00000017937) #19	FGF17 (ENSDNOG00000037487) #21	DMTN (ENSDNOG00000031187) #22	FHIP2B (ENSDNOG00000030832) #23	NUDT18 (ENSDNOG00000048317) #25	HR (ENSDNOG00000003547) #26	REEP4 (ENSDNOG00000048348) #27	LGI3 (ENSDNOG00000042666) #28	SFTPC (ENSDNOG00000043253) #29	BMP1 (ENSDNOG00000047830) #30	PHYHIP (ENSDNOG00000041995) #31	POLR3D (ENSDNOG00000013488) #32	PIWIL2 (ENSDNOG00000001468) #33	ENSDNOG00000018834 #34	PPP3CC (ENSDNOG00000045047) #35	C8orf58 (ENSDNOG00000019559)	CCAR2 (ENSDNOG00000019561)	BIN3 (ENSDNOG00000019565)
Afrotheria	ANCESTRAL SPECIES	19	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Afrotheria_a	ANCESTRAL SPECIES	18	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00390000012054.b #7	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Hyrax	MODERN SPECIES	4308																ENSPCAG00000001352 #22	FHIP2B (ENSPCAG00000001473) #23	NUDT18 (ENSPCAG00000001573) #25	HR (ENSPCAG00000001677) #26	REEP4 (ENSPCAG00000001766) #27	LGI3 (ENSPCAG00000001791) #28	SFTPC (ENSPCAG00000001831) #29	BMP1 (ENSPCAG00000001856) #30	PHYHIP (ENSPCAG00000001949) #31	POLR3D (ENSPCAG00000001971) #32
Elephant	MODERN SPECIES	225	INTS10 (ENSLAFG00000013793) #12	CSGALNACT1 (ENSLAFG00000003525) #11	SH2D4A (ENSLAFG00000014647) #10	ENSLAFG00000014210 #8	ENSLAFG00000031466 #7	ENSLAFG00000031216 #7	LPL (ENSLAFG00000005641) #13	SLC18A1 (ENSLAFG00000002491) #14	ATP6V1B2 (ENSLAFG00000008691) #15	LZTS1 (ENSLAFG00000008693) #16	GFRA2 (ENSLAFG00000007783) #17	DOK2 (ENSLAFG00000022377) #18	XPO7 (ENSLAFG00000011775) #19	NPM2 (ENSLAFG00000015584) #20	FGF17 (ENSLAFG00000004359) #21	DMTN (ENSLAFG00000015593) #22	FHIP2B (ENSLAFG00000013319) #23	NUDT18 (ENSLAFG00000015609) #25	HR (ENSLAFG00000010818) #26	REEP4 (ENSLAFG00000001522) #27	LGI3 (ENSLAFG00000018409) #28	BMP1 (ENSLAFG00000018416) #30	PHYHIP (ENSLAFG00000001561) #31	POLR3D (ENSLAFG00000001562) #32	PIWIL2 (ENSLAFG00000016420) #33	SLC39A14 (ENSLAFG00000016429) #34	PPP3CC (ENSLAFG00000018447) #35	SORBS3 (ENSLAFG00000018449) #36	PDLIM2 (ENSLAFG00000018454) #37	C8orf58 (ENSLAFG00000018457)	CCAR2 (ENSLAFG00000018459)
Tenrec	MODERN SPECIES	5041																ENSETEG00000002902 #22	FHIP2B (ENSETEG00000002913) #23	NUDT18 (ENSETEG00000002918) #25	LGI3 (ENSETEG00000002923) #28	SFTPC (ENSETEG00000002926) #29	BMP1 (ENSETEG00000002930) #30	PHYHIP (ENSETEG00000002936) #31
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00390000001491.a	ENSGT00390000010950 #12	ENSGT01050000244968.c #11	ENSGT00940000157357 #10	ENSGT00940000156591 #8	ENSGT00940000157178 #13	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00390000000531
koala	MODERN SPECIES	277										GFRA2 (ENSPCIG00000031866) #17	DOK2 (ENSPCIG00000015158) #18	XPO7 (ENSPCIG00000012732) #19	ENSPCIG00000012717	ENSPCIG00000012716 #20	FGF17 (ENSPCIG00000012714) #21	DMTN (ENSPCIG00000012711) #22	FHIP2B (ENSPCIG00000012710) #23	NUDT18 (ENSPCIG00000036571) #25	HR (ENSPCIG00000012707) #26	REEP4 (ENSPCIG00000012706) #27	LGI3 (ENSPCIG00000012704) #28	SFTPC (ENSPCIG00000012702) #29	BMP1 (ENSPCIG00000012701) #30	PHYHIP (ENSPCIG00000030700) #31	POLR3D (ENSPCIG00000012699) #32	PIWIL2 (ENSPCIG00000012698) #33	SLC39A14 (ENSPCIG00000012697) #34	PPP3CC (ENSPCIG00000005913) #35	SORBS3 (ENSPCIG00000005845) #36	PDLIM2 (ENSPCIG00000005839) #37	CCAR2 (ENSPCIG00000004974)
Common wonbat	MODERN SPECIES	1017	INTS10 (ENSVURG00010008514) #12	CSGALNACT1 (ENSVURG00010008485) #11	SH2D4A (ENSVURG00010008445) #10	ENSVURG00010008407	PSD3 (ENSVURG00010008355) #8	LPL (ENSVURG00010008260) #13	SLC18A1 (ENSVURG00010008125) #14	ATP6V1B2 (ENSVURG00010008078) #15	LZTS1 (ENSVURG00010008069) #16	GFRA2 (ENSVURG00010008027) #17	DOK2 (ENSVURG00010008006) #18	XPO7 (ENSVURG00010007924) #19	PBDC1 (ENSVURG00010007898)	ENSVURG00010007885 #20	FGF17 (ENSVURG00010007869) #21	DMTN (ENSVURG00010007703) #22	FHIP2B (ENSVURG00010007686) #23	NUDT18 (ENSVURG00010007677) #25	HR (ENSVURG00010007655) #26	ENSVURG00010007641 #27	LGI3 (ENSVURG00010007630) #28	SFTPC (ENSVURG00010007615) #29	BMP1 (ENSVURG00010007562) #30
Wallaby	MODERN SPECIES	6366																ENSMEUG00000004339 #22
Tasmanian devil	MODERN SPECIES	1	SH2D4A (ENSSHAG00000018885) #10	ENSSHAG00000018917	ENSSHAG00000030296 #8	ENSSHAG00000002224	ENSSHAG00000008136 #13	ENSSHAG00000010177 #14	ATP6V1B2 (ENSSHAG00000010514) #15	LZTS1 (ENSSHAG00000021772) #16	GFRA2 (ENSSHAG00000017337) #17	ENSSHAG00000026343	DOK2 (ENSSHAG00000017704) #18	XPO7 (ENSSHAG00000017833) #19	ENSSHAG00000017872	ENSSHAG00000020976 #20	FGF17 (ENSSHAG00000017897) #21	DMTN (ENSSHAG00000017939) #22	FHIP2B (ENSSHAG00000018000) #23	NUDT18 (ENSSHAG00000024058) #25	HR (ENSSHAG00000018060) #26	REEP4 (ENSSHAG00000018091) #27	LGI3 (ENSSHAG00000018114) #28	SFTPC (ENSSHAG00000018137) #29	BMP1 (ENSSHAG00000018145) #30	PHYHIP (ENSSHAG00000018216) #31	PIWIL2 (ENSSHAG00000023576) #33	SLC39A14 (ENSSHAG00000018386) #34	PPP3CC (ENSSHAG00000018431) #35	SORBS3 (ENSSHAG00000018540) #36	PDLIM2 (ENSSHAG00000032312) #37	CCAR2 (ENSSHAG00000018601)	BIN3 (ENSSHAG00000018614)
Opossum	MODERN SPECIES		CSGALNACT1 (ENSMODG00000009932) #11	SH2D4A (ENSMODG00000009920) #10	ENSMODG00000009906	PSD3 (ENSMODG00000009897) #8	LPL (ENSMODG00000009888) #13	SLC18A1 (ENSMODG00000009840) #14	ATP6V1B2 (ENSMODG00000009825) #15	ENSMODG00000009807	LZTS1 (ENSMODG00000009800) #16	GFRA2 (ENSMODG00000009785) #17	DOK2 (ENSMODG00000045530) #18	XPO7 (ENSMODG00000009741) #19	ENSMODG00000009685	ENSMODG00000009677 #20	FGF17 (ENSMODG00000009670) #21	DMTN (ENSMODG00000009660) #22	FHIP2B (ENSMODG00000009642) #23	ENSMODG00000009619 #25	HR (ENSMODG00000009614) #26	REEP4 (ENSMODG00000009592) #27	LGI3 (ENSMODG00000009582) #28	SFTPC (ENSMODG00000009553) #29	ENSMODG00000045526 #30	PHYHIP (ENSMODG00000009502) #31	POLR3D (ENSMODG00000009491) #32	PIWIL2 (ENSMODG00000009482) #33	SLC39A14 (ENSMODG00000009443) #34	PPP3CC (ENSMODG00000009426) #35	ENSMODG00000009368 #36	ENSMODG00000045734 #36	PDLIM2 (ENSMODG00000009355) #37
Platypus	MODERN SPECIES	16	ZNF703 (ENSOANG00000042203)	KCNU1 (ENSOANG00000001328)	UNC5D (ENSOANG00000009393)	DUSP26 (ENSOANG00000002390)	ENSOANG00000002393	MAK16 (ENSOANG00000002395)	SLC18A1 (ENSOANG00000010571) #14	ATP6V1B2 (ENSOANG00000010576) #15	LZTS1 (ENSOANG00000010581) #16	GFRA2 (ENSOANG00000013182) #17	DOK2 (ENSOANG00000013185) #18	XPO7 (ENSOANG00000013334) #19	ENSOANG00000013333	ENSOANG00000020262 #20	FGF17 (ENSOANG00000001339) #21	DMTN (ENSOANG00000048167) #22	FHIP2B (ENSOANG00000007141) #23	ENSOANG00000046429 #25	HR (ENSOANG00000001145) #26	REEP4 (ENSOANG00000001144) #27	LGI3 (ENSOANG00000042263) #28	SFTPC (ENSOANG00000036115) #29	BMP1 (ENSOANG00000010775) #30	POLR3D (ENSOANG00000010776) #32	PIWIL2 (ENSOANG00000010778) #33	SLC39A14 (ENSOANG00000010779) #34	PPP3CC (ENSOANG00000010781) #35	ENSOANG00000010782 #36	PDLIM2 (ENSOANG00000010783) #37	ENSOANG00000044232	CCAR2 (ENSOANG00000009829)
Sauria	ANCESTRAL SPECIES	27	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00390000017162.c.b #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Archelosauria	ANCESTRAL SPECIES	29	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00390000017162.c.b #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Cryptodira	ANCESTRAL SPECIES	30	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00390000017162.c.b #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00940000153664.A.b.a	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Emydidae	ANCESTRAL SPECIES		ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00940000153664.A.b.a	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Three-toed box turtle	MODERN SPECIES	20	UNC5D (ENSTMTG00000001187)	DUSP26 (ENSTMTG00000001154)	RNF122 (ENSTMTG00000001140)	TTI2 (ENSTMTG00000001115)	MAK16 (ENSTMTG00000001096)	SLC18A1 (ENSTMTG00000001018) #14	ATP6V1B2 (ENSTMTG00000000992) #15	LZTS1 (ENSTMTG00000000971) #16	GFRA2 (ENSTMTG00000000955) #17	DOK2 (ENSTMTG00000000945) #18	ENSTMTG00000000934	XPO7 (ENSTMTG00000000906) #19	PBDC1 (ENSTMTG00000000888)	NPM2 (ENSTMTG00000000852) #20	FGF17 (ENSTMTG00000000826) #21	DMTN (ENSTMTG00000000805) #22	FHIP2B (ENSTMTG00000000777) #23	NUDT18 (ENSTMTG00000000766) #25	HR (ENSTMTG00000000738) #26	REEP4 (ENSTMTG00000000716) #27	LGI3 (ENSTMTG00000000703) #28	ENSTMTG00000000676 #29	ENSTMTG00000000652 #29	ENSTMTG00000000631	BMP1 (ENSTMTG00000000601) #30	PHYHIP (ENSTMTG00000000529) #31	POLR3D (ENSTMTG00000000509) #32	ENSTMTG00000000498	PIWIL2 (ENSTMTG00000000458) #33	SLC39A14 (ENSTMTG00000000405) #34	PPP3CC (ENSTMTG00000000333) #35
painted turtle	MODERN SPECIES	709		DUSP26 (ENSCPBG00000000135)	RNF122 (ENSCPBG00000000141)	TTI2 (ENSCPBG00000000155)	MAK16 (ENSCPBG00000000176)	SLC18A1 (ENSCPBG00000000219) #14	ATP6V1B2 (ENSCPBG00000000443) #15	LZTS1 (ENSCPBG00000000471) #16	GFRA2 (ENSCPBG00000000574) #17	ENSCPBG00000000613	DOK2 (ENSCPBG00000000627) #18	ENSCPBG00000000653	XPO7 (ENSCPBG00000000811) #19	PBDC1 (ENSCPBG00000000856)	FGF17 (ENSCPBG00000000869) #21	DMTN (ENSCPBG00000000901) #22	ENSCPBG00000000930	FHIP2B (ENSCPBG00000000953) #23	NUDT18 (ENSCPBG00000000974) #25	HR (ENSCPBG00000001011) #26	REEP4 (ENSCPBG00000001072) #27	LGI3 (ENSCPBG00000001091) #28	SFTPC (ENSCPBG00000001112) #29	BMP1 (ENSCPBG00000001275) #30	PHYHIP (ENSCPBG00000001301) #31	POLR3D (ENSCPBG00000001313) #32	ENSCPBG00000001327	PIWIL2 (ENSCPBG00000001412) #33	PPP3CC (ENSCPBG00000002099) #35	SORBS3 (ENSCPBG00000002187) #36	PDLIM2 (ENSCPBG00000002239) #37
Testudinidae	ANCESTRAL SPECIES	31	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00940000153664.A.b.a	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37
Abingdon island giant tortoise	MODERN SPECIES	2155								GFRA2 (ENSCABG00000017883) #17	DOK2 (ENSCABG00000017882) #18	ENSCABG00000017881	XPO7 (ENSCABG00000017880) #19	PBDC1 (ENSCABG00000017879)	ENSCABG00000017878	NPM2 (ENSCABG00000017877) #20	FGF17 (ENSCABG00000017876) #21	DMTN (ENSCABG00000017875) #22	FHIP2B (ENSCABG00000017874) #23	NUDT18 (ENSCABG00000017873) #25	HR (ENSCABG00000017872) #26	REEP4 (ENSCABG00000017871) #27	LGI3 (ENSCABG00000017868) #28	SFTPC (ENSCABG00000017866) #29	ENSCABG00000017865	BMP1 (ENSCABG00000017863) #30	PHYHIP (ENSCABG00000017861) #31	POLR3D (ENSCABG00000017860) #32	PIWIL2 (ENSCABG00000017853) #33	SLC39A14 (ENSCABG00000017842) #34	PPP3CC (ENSCABG00000017839) #35	SORBS3 (ENSCABG00000017830) #36	PDLIM2 (ENSCABG00000017824) #37
Goode s thornscrub tortoise	MODERN SPECIES	11	UNC5D (ENSGEVG00005000704)	DUSP26 (ENSGEVG00005000631)	RNF122 (ENSGEVG00005000577)	TTI2 (ENSGEVG00005000553)	MAK16 (ENSGEVG00005000537)	SLC18A1 (ENSGEVG00005000492) #14	ATP6V1B2 (ENSGEVG00005000461) #15	LZTS1 (ENSGEVG00005000439) #16	GFRA2 (ENSGEVG00005000408) #17	DOK2 (ENSGEVG00005000377) #18	ENSGEVG00005000260	XPO7 (ENSGEVG00005000138) #19	PBDC1 (ENSGEVG00005000047)	NPM2 (ENSGEVG00005000034) #20	FGF17 (ENSGEVG00005016742) #21	DMTN (ENSGEVG00005016695) #22	FHIP2B (ENSGEVG00005016640) #23	NUDT18 (ENSGEVG00005016609) #25	HR (ENSGEVG00005016448) #26	REEP4 (ENSGEVG00005016410) #27	LGI3 (ENSGEVG00005016349) #28	SFTPC (ENSGEVG00005016167) #29	BMP1 (ENSGEVG00005016111) #30	PHYHIP (ENSGEVG00005016066) #31	POLR3D (ENSGEVG00005015982) #32	ENSGEVG00005015965	PIWIL2 (ENSGEVG00005014769) #33	SLC39A14 (ENSGEVG00005014596) #34	PPP3CC (ENSGEVG00005013454) #35	SORBS3 (ENSGEVG00005013229) #36	PDLIM2 (ENSGEVG00005013179) #37
Chinese turtle	MODERN SPECIES	2051										GFRA2 (ENSPSIG00000007859) #17	DOK2 (ENSPSIG00000007817) #18	XPO7 (ENSPSIG00000007802) #19	PBDC1 (ENSPSIG00000007778)	NPM2 (ENSPSIG00000007722) #20	FGF17 (ENSPSIG00000007719) #21	DMTN (ENSPSIG00000007271) #22	FHIP2B (ENSPSIG00000007260) #23	NUDT18 (ENSPSIG00000007241) #25	HR (ENSPSIG00000007041) #26	REEP4 (ENSPSIG00000006851) #27	LGI3 (ENSPSIG00000006794) #28	ENSPSIG00000006755 #29	ENSPSIG00000006638 #29	BMP1 (ENSPSIG00000006192) #30	PHYHIP (ENSPSIG00000006158) #31	POLR3D (ENSPSIG00000006113) #32	ENSPSIG00000001643	ENSPSIG00000005850	SLC39A14 (ENSPSIG00000005712) #34	PPP3CC (ENSPSIG00000018086) #35	ENSPSIG00000018078 #36
Archosauria	ANCESTRAL SPECIES	30	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00950000185549
Australian saltwater crocodile	MODERN SPECIES	51	KCNU1 (ENSCPRG00005002858)	UNC5D (ENSCPRG00005002796)	DUSP26 (ENSCPRG00005002787)	RNF122 (ENSCPRG00005002779)	TTI2 (ENSCPRG00005002772)	MAK16 (ENSCPRG00005002746)	SLC18A1 (ENSCPRG00005002726) #14	ATP6V1B2 (ENSCPRG00005002451) #15	LZTS1 (ENSCPRG00005002415) #16	ENSCPRG00005002409 #17	DOK2 (ENSCPRG00005002405) #18	XPO7 (ENSCPRG00005002400) #19	PBDC1 (ENSCPRG00005002392)	NPM2 (ENSCPRG00005002385) #20	FGF17 (ENSCPRG00005002380) #21	DMTN (ENSCPRG00005002215) #22	NUDT18 (ENSCPRG00005002184) #25	PLPBP (ENSCPRG00005002179)	ADGRA2 (ENSCPRG00005001808)	ENSCPRG00005001782 #17	ENSCPRG00005001777	EIF4EBP1 (ENSCPRG00005001774)	ENSCPRG00005001771	ASH2L (ENSCPRG00005001645)	STAR (ENSCPRG00005001620)	ENSCPRG00005001522	LSM1 (ENSCPRG00005001504)	BAG4 (ENSCPRG00005001476)	ENSCPRG00005001463	DDHD2 (ENSCPRG00005001384)	PLPP5 (ENSCPRG00005001370)
Aves	ANCESTRAL SPECIES	30	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00950000185549
Neognathae	ANCESTRAL SPECIES	33	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT01030000235403	ENSGT00940000157176.h #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558.b #36	ENSGT00940000160558.a #36
Galloanserae	ANCESTRAL SPECIES	32	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558.b #36	ENSGT00940000160558.a #36	ENSGT00940000160418.l #37	ENSGT00950000185549	ENSGT00530000063672.b	ENSGT00950000182882.B	ENSGT00940000160355	ENSGT00940000162387	ENSGT00940000158918	ENSGT00720000108860	ENSGT00940000157037.b.b
Phasianidae	ANCESTRAL SPECIES	31	ENSGT00390000014618.b	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00950000182850.a.b.b #22	ENSGT00940000157176.g.a #30	ENSGT00950000182882.B	ENSGT00940000160355	ENSGT00940000162387	ENSGT00940000158918	ENSGT00720000108860	ENSGT00940000157037.b.b	ENSGT00530000063711.a	ENSGT00940000155874	ENSGT01100000263540.B.d	ENSGT00940000158607	ENSGT00940000160930	ENSGT00390000005989.b	ENSGT00940000156716	ENSGT00940000161685.A.a
Phasianidae_b	ANCESTRAL SPECIES	36	ENSGT00390000014618.b	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00950000182850.a.b.b #22	ENSGT00950000182882.B	ENSGT00940000160355	ENSGT00940000162387	ENSGT00940000158918	ENSGT00720000108860	ENSGT00940000157037.b.b	ENSGT00530000063711.a	ENSGT00940000155874	ENSGT01100000263540.B.d	ENSGT00940000158607	ENSGT00940000160930	ENSGT00390000005989.b	ENSGT00940000156716	ENSGT00940000161685.A.a	ENSGT00940000156208
Chicken	MODERN SPECIES	14	UNC5D (ENSGALG00010019540)	DUSP26 (ENSGALG00010017747)	RNF122 (ENSGALG00010021033)	TTI2 (ENSGALG00010017726)	MAK16 (ENSGALG00010017705)	SLC18A1 (ENSGALG00010017696) #14	ATP6V1B2 (ENSGALG00010017694) #15	LZTS1 (ENSGALG00010017691) #16	ENSGALG00010017686	ENSGALG00010017680	GFRA2 (ENSGALG00010017638) #17	DOK2 (ENSGALG00010019799) #18	XPO7 (ENSGALG00010020305) #19	ENSGALG00010020298	NPM2 (ENSGALG00010020292) #20	DMTN (ENSGALG00010020252) #22	ENSGALG00010020017	SORBS3 (ENSGALG00010020010) #36	ENSGALG00010019966	ENSGALG00010019935	ENSGALG00010019910	BIN3 (ENSGALG00010019859)	ENSGALG00010019328	EGR3 (ENSGALG00010019322)	PEBP4 (ENSGALG00010019726)	RHOBTB2 (ENSGALG00010019679)	TNFRSF10B (ENSGALG00010019652)	CHMP7 (ENSGALG00010019588)	ENSGALG00010020751	R3HCC1 (ENSGALG00010020055)	LOXL2 (ENSGALG00010020025)
Neognathae_b	ANCESTRAL SPECIES	28	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT01030000235403	ENSGT00940000157176.h #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558.b #36	ENSGT00940000160558.a #36
Neognathae_c	ANCESTRAL SPECIES	30	ENSGT00940000161817	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT01030000235403	ENSGT00940000157176.h #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558.b #36	ENSGT00940000160558.a #36
Golden eagle	MODERN SPECIES	4	UNC5D (ENSACCG00020005237)	DUSP26 (ENSACCG00020005301)	RNF122 (ENSACCG00020005328)	TTI2 (ENSACCG00020005359)	MAK16 (ENSACCG00020005391)	SLC18A1 (ENSACCG00020005469) #14	ATP6V1B2 (ENSACCG00020005521) #15	LZTS1 (ENSACCG00020005546) #16	ENSACCG00020005557	GFRA2 (ENSACCG00020005573) #17	DOK2 (ENSACCG00020005598) #18	XPO7 (ENSACCG00020005632) #19	PBDC1 (ENSACCG00020005671)	NPM2 (ENSACCG00020005694) #20	FGF17 (ENSACCG00020005742) #21	DMTN (ENSACCG00020005796) #22	ENSACCG00020005860	FHIP2B (ENSACCG00020005948) #23	NUDT18 (ENSACCG00020005998) #25	REEP4 (ENSACCG00020006043) #27	LGI3 (ENSACCG00020006071) #28	SFTPC (ENSACCG00020006086) #29	ENSACCG00020006097	BMP1 (ENSACCG00020006137) #30	PHYHIP (ENSACCG00020006184) #31	POLR3D (ENSACCG00020006199) #32	PIWIL2 (ENSACCG00020006373) #33	SLC39A14 (ENSACCG00020006593) #34	PPP3CC (ENSACCG00020006649) #35	ENSACCG00020006690 #36	ENSACCG00020006707 #36
Kakapo	MODERN SPECIES	14									LZTS1 (ENSSHBG00005012524) #16	GFRA2 (ENSSHBG00005012501) #17	DOK2 (ENSSHBG00005012479) #18	XPO7 (ENSSHBG00005012423) #19	PBDC1 (ENSSHBG00005012386)	NPM2 (ENSSHBG00005012369) #20	FGF17 (ENSSHBG00005012352) #21	DMTN (ENSSHBG00005011429) #22	FHIP2B (ENSSHBG00005011262) #23	NUDT18 (ENSSHBG00005011239) #25	ENSSHBG00005011199 #26	REEP4 (ENSSHBG00005011168) #27	LGI3 (ENSSHBG00005011133) #28	SFTPC (ENSSHBG00005011104) #29	BMP1 (ENSSHBG00005009557) #30	PHYHIP (ENSSHBG00005009470) #31	POLR3D (ENSSHBG00005009453) #32	PIWIL2 (ENSSHBG00005009433) #33	SLC39A14 (ENSSHBG00005009411) #34	PPP3CC (ENSSHBG00005009372) #35	ENSSHBG00005009354 #36	ENSSHBG00005009299 #36	ENSSHBG00005009266 #37
Passeriformes	ANCESTRAL SPECIES	26	ENSGT00950000182815.a.a.b	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868.d #18	ENSGT00940000159868.c #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161687 #26	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00940000157176.h #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986.k.a #34	ENSGT00940000154115.c.a #35	ENSGT00940000160558.b #36	ENSGT00940000160558.a #36	ENSGT00940000160418.l #37
Great tit	MODERN SPECIES	14	ENSPMJG00000017894	UNC5D (ENSPMJG00000017814)	ENSPMJG00000017811	DUSP26 (ENSPMJG00000017808)	ENSPMJG00000017807	RNF122 (ENSPMJG00000017806)	TTI2 (ENSPMJG00000017804)	MAK16 (ENSPMJG00000017803)	SLC18A1 (ENSPMJG00000017796) #14	ATP6V1B2 (ENSPMJG00000017795) #15	LZTS1 (ENSPMJG00000017793) #16	GFRA2 (ENSPMJG00000017784) #17	ENSPMJG00000017782 #18	ENSPMJG00000017781	FGF17 (ENSPMJG00000017780) #21	DMTN (ENSPMJG00000017779) #22	FHIP2B (ENSPMJG00000017777) #23	NUDT18 (ENSPMJG00000017776) #25	HR (ENSPMJG00000017775) #26	ENSPMJG00000017774	REEP4 (ENSPMJG00000017773) #27	LGI3 (ENSPMJG00000017771) #28	ENSPMJG00000017770 #29	BMP1 (ENSPMJG00000017767) #30	PHYHIP (ENSPMJG00000017766) #31	POLR3D (ENSPMJG00000017765) #32	PIWIL2 (ENSPMJG00000017764) #33	SLC39A14 (ENSPMJG00000017763) #34	PPP3CC (ENSPMJG00000017755) #35	SORBS3 (ENSPMJG00000017754) #36	PDLIM2 (ENSPMJG00000017753) #37
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b #22
Common canary	MODERN SPECIES	108								XPO7 (ENSSCAG00000011395) #19	ENSSCAG00000011322 #18	GFRA2 (ENSSCAG00000011301) #17	LZTS1 (ENSSCAG00000011292) #16	ATP6V1B1 (ENSSCAG00000011154)	SLC18A1 (ENSSCAG00000011126) #14	MAK16 (ENSSCAG00000011120)	TTI2 (ENSSCAG00000011111)	ENSSCAG00000011105 #22
Medium ground finch	MODERN SPECIES	552																DMTN (ENSGFOG00000011691) #22
Lepidosauria	ANCESTRAL SPECIES	148										ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00940000161965 #21	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00390000017162.c.b #29
Episquamata	ANCESTRAL SPECIES	24												ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00390000016151	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00390000017162.c.b #29	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00390000008694.b.b	ENSGT00390000004965	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279	ENSGT00930000150969.A.c.a
Toxicofera	ANCESTRAL SPECIES	49													ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00390000016151	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00940000161711	ENSGT00390000007992	ENSGT00390000001901	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000160552	ENSGT00940000160325.b	ENSGT00390000014909	ENSGT00940000161614	ENSGT00940000173670	ENSGT00940000156918	ENSGT00390000010391
Elapidae	ANCESTRAL SPECIES	35	ENSGT00940000161976	ENSGT00940000160325.b	ENSGT00390000014909	ENSGT00940000161614	ENSGT00940000173670	ENSGT00940000156918	ENSGT00390000010391	ENSGT00390000007636	ENSGT00940000155847	ENSGT00940000153710.a	ENSGT00940000154148.a.b	ENSGT00950000182943.kb.a	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00390000016151	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00940000161711	ENSGT00390000007992	ENSGT00390000001901	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000176261	ENSGT00730000111371	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a	ENSGT00940000154962.A
Indian cobra	MODERN SPECIES	7	ENSNNAG00000006515	PSD4 (ENSNNAG00000006478)	VAMP8 (ENSNNAG00000006460)	GGCX (ENSNNAG00000006440)	DKK4 (ENSNNAG00000006409)	POLB (ENSNNAG00000006324)	UFM1 (ENSNNAG00000006300)	KANSL3 (ENSNNAG00000006221)	ENSNNAG00000006182	STAMBP (ENSNNAG00000006152)	ACTG2 (ENSNNAG00000006120)	ENSNNAG00000006103	GFRA2 (ENSNNAG00000006075) #17	XPO7 (ENSNNAG00000006001) #19	ENSNNAG00000005961	DMTN (ENSNNAG00000005920) #22	NDUFA10 (ENSNNAG00000005886)	FHIP2B (ENSNNAG00000005848) #23	NUDT18 (ENSNNAG00000005830) #25	REEP4 (ENSNNAG00000005653) #27	SFTPB (ENSNNAG00000005606)	C2orf68 (ENSNNAG00000005564)	USP39 (ENSNNAG00000005511)	TMEM150A (ENSNNAG00000005479)	ENSNNAG00000005460	VAMP5 (ENSNNAG00000005451)	TGFA (ENSNNAG00000005430)	FAM136A (ENSNNAG00000005412)	SNRPG (ENSNNAG00000005396)	PCYOX1 (ENSNNAG00000005378)	TIA1 (ENSNNAG00000005335)
Elapidae_a	ANCESTRAL SPECIES	58	ENSGT00940000161976	ENSGT00940000160325.b	ENSGT00390000014909	ENSGT00940000161614	ENSGT00940000173670	ENSGT00940000156918	ENSGT00390000010391	ENSGT00390000007636	ENSGT00940000155847	ENSGT00940000153710.a	ENSGT00940000154148.a.b	ENSGT00950000182943.kb.a	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00390000016151	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00940000161711	ENSGT00390000007992	ENSGT00390000001901	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000176261	ENSGT00730000111371	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a	ENSGT00940000154962.A
Blue-lipped sea krait	MODERN SPECIES	3262	TMED4 (ENSLLTG00000005312)	ENSLLTG00000005322	PSD4 (ENSLLTG00000005327)	VAMP8 (ENSLLTG00000005342)	GGCX (ENSLLTG00000005351)	DKK4 (ENSLLTG00000005386)	POLB (ENSLLTG00000005401)	UFM1 (ENSLLTG00000005451)	KANSL3 (ENSLLTG00000005487)	DUSP11 (ENSLLTG00000005571)	STAMBP (ENSLLTG00000005583)	ENSLLTG00000005598	ENSLLTG00000005606	GFRA2 (ENSLLTG00000005617) #17	XPO7 (ENSLLTG00000005630) #19	DMTN (ENSLLTG00000005664) #22	NDUFA10 (ENSLLTG00000005690)	FHIP2B (ENSLLTG00000005702) #23	REEP4 (ENSLLTG00000005728) #27	ENSLLTG00000005760	USP39 (ENSLLTG00000005789)	C2orf68 (ENSLLTG00000005814)	TMEM150A (ENSLLTG00000005820)	ENSLLTG00000005826	VAMP5 (ENSLLTG00000005833)
Acanthophiinae	ANCESTRAL SPECIES	40	ENSGT00940000161976	ENSGT00940000160325.b	ENSGT00390000014909	ENSGT00940000161614	ENSGT00940000173670	ENSGT00940000156918	ENSGT00390000010391	ENSGT00390000007636	ENSGT00940000155847	ENSGT00940000153710.a	ENSGT00940000154148.a.b	ENSGT00950000182943.kb.a	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00390000016151	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931.f #25	ENSGT00940000161674 #27	ENSGT00940000161711	ENSGT00390000007992	ENSGT00390000001901	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000176261	ENSGT00940000165973	ENSGT00730000111371	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a
Eastern brown snake	MODERN SPECIES	76	ENSPTXG00000013462	VAMP8 (ENSPTXG00000013464)	GGCX (ENSPTXG00000013466)	DKK4 (ENSPTXG00000013467)	ENSPTXG00000013468	POLB (ENSPTXG00000013469)	UFM1 (ENSPTXG00000013473)	ENSPTXG00000013474	ENSPTXG00000013476	STAMBP (ENSPTXG00000013478)	ENSPTXG00000013480	ENSPTXG00000013481	GFRA2 (ENSPTXG00000013483) #17	XPO7 (ENSPTXG00000013490) #19	PBDC1 (ENSPTXG00000015088)	DMTN (ENSPTXG00000015092) #22	NDUFA10 (ENSPTXG00000015687)	FHIP2B (ENSPTXG00000015706) #23	ENSPTXG00000015707 #25	REEP4 (ENSPTXG00000015708) #27	ENSPTXG00000015709	USP39 (ENSPTXG00000015711)	C2orf68 (ENSPTXG00000016597)	TMEM150A (ENSPTXG00000016598)	ENSPTXG00000016600	VAMP5 (ENSPTXG00000016601)	TGFA (ENSPTXG00000016603)	FAM136A (ENSPTXG00000016604)	SNRPG (ENSPTXG00000016606)	PCYOX1 (ENSPTXG00000016608)	TIA1 (ENSPTXG00000016609)
Lizard	MODERN SPECIES	1454																ENSACAG00000000794 #22	ENSACAG00000000705	ENSACAG00000037682	ENSACAG00000038581	ENSACAG00000000599 #25	ITPRIPL1 (ENSACAG00000025480)	ENSACAG00000038214	ENSACAG00000000434	TMEM127 (ENSACAG00000000419)
Laterata	ANCESTRAL SPECIES	44												ENSGT00940000156168.B #17	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00390000016151	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00940000160296 #28	ENSGT00390000017162.c.a #29	ENSGT00390000017162.c.b #29	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00390000008694.b.b	ENSGT00390000004965	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279	ENSGT00930000150969.A.c.a
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000012386	ENSPMRG00000012384	NPC1L1 (ENSPMRG00000012375)	MRPS24 (ENSPMRG00000012371)	ENSPMRG00000012368	SLC20A1 (ENSPMRG00000012354)	NT5DC4 (ENSPMRG00000012344)	ENSPMRG00000012338	ENSPMRG00000012332	ENSPMRG00000012323	GFRA2 (ENSPMRG00000012316) #17	ENSPMRG00000012311	ENSPMRG00000012302 #18	XPO7 (ENSPMRG00000012274) #19	PBDC1 (ENSPMRG00000012269)	DMTN (ENSPMRG00000012253) #22	NDUFA10 (ENSPMRG00000012241)	FHIP2B (ENSPMRG00000012234) #23	NUDT18 (ENSPMRG00000012231) #25	ENSPMRG00000012230	REEP4 (ENSPMRG00000012226) #27	LGI3 (ENSPMRG00000012224) #28	ENSPMRG00000012221 #29	ENSPMRG00000012220 #29	ENSPMRG00000012217	RASSF2 (ENSPMRG00000012206)	SLC23A2 (ENSPMRG00000012189)	TMEM230 (ENSPMRG00000012185)	ENSPMRG00000012184	ENSPMRG00000012181	CDS2 (ENSPMRG00000012169)
Argentine black and white tegu	MODERN SPECIES	94	SBNO2 (ENSSMRG00000016348)	ENSSMRG00000016347	POLRMT (ENSSMRG00000016346)	HCN2 (ENSSMRG00000016345)	NDUFS7 (ENSSMRG00000016344)	GAMT (ENSSMRG00000016343)	DAZAP1 (ENSSMRG00000016342)	RPS15 (ENSSMRG00000016341)	APC2 (ENSSMRG00000016340)	TJP3 (ENSSMRG00000016339)	APBA3 (ENSSMRG00000016338)	GFRA2 (ENSSMRG00000016335) #17	ENSSMRG00000016334 #18	XPO7 (ENSSMRG00000016333) #19	ENSSMRG00000016332	DMTN (ENSSMRG00000016329) #22	NDUFA10 (ENSSMRG00000016327)	FHIP2B (ENSSMRG00000016325) #23	NUDT18 (ENSSMRG00000016323) #25	REEP4 (ENSSMRG00000016321) #27	ENSSMRG00000016317	USP39 (ENSSMRG00000016314)	C2orf68 (ENSSMRG00000016312)	TMEM150A (ENSSMRG00000016309)	RNF181 (ENSSMRG00000016308)	VAMP5 (ENSSMRG00000016307)	VAMP8 (ENSSMRG00000016306)	GGCX (ENSSMRG00000016305)	DKK4 (ENSSMRG00000016304)	POLB (ENSSMRG00000016114)	UFM1 (ENSSMRG00000016113)
tuatara	MODERN SPECIES	513										GFRA2 (ENSSPUG00000011673) #17	DOK2 (ENSSPUG00000011603) #18	XPO7 (ENSSPUG00000011549) #19	PBDC1 (ENSSPUG00000011523)	NPM2 (ENSSPUG00000011509) #20	FGF17 (ENSSPUG00000011499) #21	DMTN (ENSSPUG00000011478) #22	FHIP2B (ENSSPUG00000011452) #23	NUDT18 (ENSSPUG00000011438) #25	REEP4 (ENSSPUG00000011425) #27	LGI3 (ENSSPUG00000011408) #28
Anura	ANCESTRAL SPECIES	30	ENSGT00390000013415.a.b	ENSGT01030000234527.A.a.b.a.a.n	ENSGT01060000248581.E.d.b.a.b.a.a	ENSGT00940000161454.i.b.b	ENSGT00950000183082.b.a	ENSGT00940000158663	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159352 #14	ENSGT00940000155068.b #15	ENSGT00940000158603.f	ENSGT00940000159868 #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00940000161418 #20	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000161674 #27	ENSGT00390000017162 #29	ENSGT00940000157176 #30	ENSGT00390000014563.b #31	ENSGT00390000013948.a #32	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.d ##35	ENSGT00940000160558 #36	ENSGT00940000160418 #37	ENSGT00950000182882.B	ENSGT00940000160355	ENSGT00940000162387
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000017794	ENSLLEG00000017890	ENSLLEG00000018021	MAK16 (ENSLLEG00000018049)	ENSLLEG00000018128	TTI2 (ENSLLEG00000018148)	SLC18A1 (ENSLLEG00000018264) #14	ATP6V1B2 (ENSLLEG00000018413) #15	ENSLLEG00000018659	GFRA2 (ENSLLEG00000018714) ##17	ENSLLEG00000018974	DOK2 (ENSLLEG00000019038) #18	XPO7 (ENSLLEG00000019200) #19	PBDC1 (ENSLLEG00000020403)	NPM2 (ENSLLEG00000020477) #20	DMTN (ENSLLEG00000020614) #22	FHIP2B (ENSLLEG00000021355) #23	NUDT18 (ENSLLEG00000021604) #25	REEP4 (ENSLLEG00000021676) #27	SFTPC (ENSLLEG00000021760) #29	ENSLLEG00000021859	BMP1 (ENSLLEG00000021905) #30	PHYHIP (ENSLLEG00000022447) #31	POLR3D (ENSLLEG00000022538) #32	PIWIL2 (ENSLLEG00000022744) #33	ENSLLEG00000024172	ENSLLEG00000024202	SLC39A14 (ENSLLEG00000024250) #34	ENSLLEG00000024713 ##35	ENSLLEG00000026509 #37	ENSLLEG00000026536
Frog	MODERN SPECIES	3	mak16 (ENSXETG00000016495)	tti2 (ENSXETG00000039663)	slc18a1 (ENSXETG00000016493) #14	ENSXETG00000047858	ENSXETG00000037868 #14	ENSXETG00000034182	ENSXETG00000016483	atp6v1b2 (ENSXETG00000016476) #15	ENSXETG00000045740	lzts1 (ENSXETG00000016474)	gfra2 (ENSXETG00000010546) ##17	dok2 (ENSXETG00000010545) #18	xpo7 (ENSXETG00000010544) #19	pbdc1 (ENSXETG00000010543)	npm2 (ENSXETG00000010542) #20	dmtn (ENSXETG00000010540) #22	fhip2b (ENSXETG00000010539) #23	nudt18 (ENSXETG00000037630) #25	reep4 (ENSXETG00000010537) #27	sftpc (ENSXETG00000031314) #29	bmp1 (ENSXETG00000010536) #30	phyhip (ENSXETG00000010535) #31	polr3d (ENSXETG00000010534) #32	piwil2 (ENSXETG00000010533) #33	slc39a14 (ENSXETG00000010532) #34	ppp3cb (ENSXETG00000010528) ##35	sorbs3 (ENSXETG00000034882) #36	pdlim2 (ENSXETG00000037689) #37	ENSXETG00000048910	bin3 (ENSXETG00000044280)	egr3 (ENSXETG00000031881)
Coelacanth	MODERN SPECIES	353	PPP3CC (ENSLACG00000004479) #35	SORBS3 (ENSLACG00000008121) #36	ENSLACG00000008154	ENSLACG00000010398 #37	CCAR2 (ENSLACG00000011333)	BIN3 (ENSLACG00000011826)	EGR3 (ENSLACG00000013087)	PEBP4 (ENSLACG00000013523)	RHOBTB2 (ENSLACG00000015074)	ENSLACG00000022264	ENSLACG00000015570	ENSLACG00000015788	XPO7 (ENSLACG00000015823) #19	PBDC1 (ENSLACG00000016137)	NPM2 (ENSLACG00000016196) #20	DMTN (ENSLACG00000016733) #22	ENSLACG00000016972	FHIP2B (ENSLACG00000017024) #23	NUDT18 (ENSLACG00000017102) #25	PCNX2 (ENSLACG00000017121)	NTPCR (ENSLACG00000017277)	MAP10 (ENSLACG00000017321)
Actinopterygii	ANCESTRAL SPECIES	183	ENSGT00390000011010.a.a	ENSGT00940000163584.b.b	ENSGT00940000156732	ENSGT00940000160915	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000153710.a	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00530000063555.B	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00940000164380.b
Neopterygii	ANCESTRAL SPECIES	104	ENSGT00940000163584.b.b	ENSGT00940000156732.a.b	ENSGT00940000160915	ENSGT00940000157038	ENSGT00940000156732.a.a	ENSGT00530000064712	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000153710.a	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00530000063555.B	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00940000164380.b	ENSGT00550000074823.b.b	ENSGT01010000222287.B.a.a.a.b	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.d ##35	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888	ENSGT00940000159875	ENSGT00390000000134.b	ENSGT00530000063711.a
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b.a #22
Clupeocephala	ANCESTRAL SPECIES	320															ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00940000165894.a	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00490000043388.a	ENSGT00940000158107.a.b	ENSGT00940000158936	ENSGT00730000111133	ENSGT00940000164321.c	ENSGT00940000155477	ENSGT00390000009488	ENSGT00940000158323.h	ENSGT00390000006780
Otomorpha	ANCESTRAL SPECIES	325							ENSGT00390000006780	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b	ENSGT00940000165894.a	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00490000043388.a
Clupeiformes	ANCESTRAL SPECIES	303	ENSGT00950000183125.b.a.a.a.a.b	ENSGT01030000234539.b.b.a.i	ENSGT00940000165894.a	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00390000006780	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133.ab	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239
Atlantic herring	MODERN SPECIES	23	ENSCHAG00000015131	nelfb (ENSCHAG00000014916)	entpd2a.1 (ENSCHAG00000014903)	pold2 (ENSCHAG00000014807)	AEBP1 (ENSCHAG00000014474)	ELMOD3 (ENSCHAG00000014428)	star (ENSCHAG00000014237)	ENSCHAG00000013106	lsm1 (ENSCHAG00000013056)	bag4 (ENSCHAG00000013046)	ENSCHAG00000013032	DUSP26 (ENSCHAG00000013022)	rsph14 (ENSCHAG00000013018)	ENSCHAG00000012975	ENSCHAG00000012949	DMTN (ENSCHAG00000012819) #22	ENSCHAG00000012794	fhip2b (ENSCHAG00000012687) #23	nudt18 (ENSCHAG00000012679) #25	adam9 (ENSCHAG00000011886)	adam9 (ENSCHAG00000011732)	ENSCHAG00000011719	anapc5 (ENSCHAG00000010301)	rnf34a (ENSCHAG00000010217)	kdm2ba (ENSCHAG00000010206)	ORAI1 (ENSCHAG00000010157)	rflna (ENSCHAG00000010145)	ncor2 (ENSCHAG00000008412)	EP400 (ENSCHAG00000006077)	ulk1a (ENSCHAG00000005888)	tesca (ENSCHAG00000005856)
Denticle herring	MODERN SPECIES	2	zcchc8 (ENSDCDG00000002992)	rsrc2 (ENSDCDG00000002949)	ercc8 (ENSDCDG00000029391)	elovl7a (ENSDCDG00000029385)	PDE4D (ENSDCDG00000029029)	rab3c (ENSDCDG00000028997)	si:dkey-190g11.3 (ENSDCDG00000028995)	plk2b (ENSDCDG00000028597)	ENSDCDG00000028569	pold2 (ENSDCDG00000028553)	star (ENSDCDG00000028548)	lsm1 (ENSDCDG00000028545)	bag4 (ENSDCDG00000028544)	DUSP26 (ENSDCDG00000028543)	rsph14 (ENSDCDG00000028542)	DMTN (ENSDCDG00000028540) #22	mymk (ENSDCDG00000028535)	ENSDCDG00000028528	fhip2b (ENSDCDG00000028505) #23	ncor2 (ENSDCDG00000027112)	mier3b (ENSDCDG00000027021)	kif2a (ENSDCDG00000026300)	unc45b (ENSDCDG00000023465)	pip5k1bb (ENSDCDG00000023395)	fxn (ENSDCDG00000023387)	tjp2b (ENSDCDG00000023358)	ENTREP1 (ENSDCDG00000023329)	APBA1 (ENSDCDG00000022754)	ptar1 (ENSDCDG00000022744)	mamdc2a (ENSDCDG00000022701)	MYORG (ENSDCDG00000022682)
Euteleosteomorpha	ANCESTRAL SPECIES	598															ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22
Acanthomorphata	ANCESTRAL SPECIES	207				ENSGT00390000003878	ENSGT00940000159352 #14	ENSGT01030000234539.b.b.a.j	ENSGT00950000183125.b.a.a.a.b	ENSGT00940000156239	ENSGT00940000156837	ENSGT00610000087474	ENSGT01080000257533	ENSGT00980000198657	ENSGT00940000177260	ENSGT00390000002931 #25	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000004950	ENSGT00550000074618.b	ENSGT00530000065159	ENSGT00940000155553.e.b
Euacanthomorphacea	ANCESTRAL SPECIES	58	ENSGT00940000156744.o	ENSGT00940000161616.d	ENSGT00940000155670	ENSGT00940000155434	ENSGT00390000003878	ENSGT00940000159352 #14	ENSGT01030000234539.b.b.a.j	ENSGT00950000183125.b.a.a.a.b	ENSGT00940000156239	ENSGT00940000156837	ENSGT00610000087474	ENSGT00980000198657	ENSGT00940000177260	ENSGT00390000002931 #25	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000004950	ENSGT00550000074618.b	ENSGT00530000065159	ENSGT00940000155553.e.b
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005008431	ENSMMDG00005008423	ENSMMDG00005007341	ENSMMDG00005007325	ENSMMDG00005007324	ENSMMDG00005007316	ENSMMDG00005007314	ENSMMDG00005007308	ENSMMDG00005007302	ENSMMDG00005007297	ENSMMDG00005007294	ENSMMDG00005007291	ENSMMDG00005007289	nudt18 (ENSMMDG00005007287) #25	ENSMMDG00005007285	DMTN (ENSMMDG00005007009) #22	ENSMMDG00005007003	mak16 (ENSMMDG00005006998)	ENSMMDG00005006995	ENSMMDG00005006829	LRRC2 (ENSMMDG00005006818)	srp19 (ENSMMDG00005006811)	ENSMMDG00005006807	zgc:101664 (ENSMMDG00005006802)	pik3r1 (ENSMMDG00005003259)	ENSMMDG00005003157	ENSMMDG00005003154	ENSMMDG00005003148	ENSMMDG00005003143	ENSMMDG00005003135	ska3 (ENSMMDG00005003126)
Percomorphaceae	ANCESTRAL SPECIES	112						ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.b	ENSGT01100000263483.D.d	ENSGT00940000164100.A.c.a	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960
Tiger tail seahorse	MODERN SPECIES	127	ENSHCOG00000014792	ENSHCOG00000014786	ENSHCOG00000014781	ENSHCOG00000014777	ENSHCOG00000014713	ENSHCOG00000013501	ENSHCOG00000013489	ENSHCOG00000013472	ENSHCOG00000013455	ENSHCOG00000000385	pik3r1 (ENSHCOG00000013400)	ENSHCOG00000013354	ENSHCOG00000013345	ENSHCOG00000013327	srp19 (ENSHCOG00000013231)	ENSHCOG00000013203 #22	ENSHCOG00000013180	mak16 (ENSHCOG00000013162)	ENSHCOG00000013147	ENSHCOG00000013125	ENSHCOG00000013055	ENSHCOG00000012991	ENSHCOG00000012972	SNX2 (ENSHCOG00000012953)	PPIC (ENSHCOG00000012937)	PRDM6 (ENSHCOG00000012899)	CEP120 (ENSHCOG00000012861)	ENSHCOG00000012798	ENSHCOG00000012779
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00940000166999.A	ENSGT01100000263483.D.d.a.a.a.a	ENSGT01100000263483.D.d.a.b.b	ENSGT00950000182960.a.b	ENSGT00940000164100.A.c.b.b	ENSGT01100000263538.A.b.h	ENSGT01100000263483.D.d.a.b.a.a.b	ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a	ENSGT00940000175544	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00940000155852	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000177613	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000166999.A	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT01100000263483.D.c.b.b.a	ENSGT00940000164100.A.c.a.d.a.b.b	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00390000003213	ENSGT00770000121806.b	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000179723	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Carangaria	ANCESTRAL SPECIES	27											ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000179723	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Carangaria_A	ANCESTRAL SPECIES	88											ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000179723	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239.n	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Seriola	ANCESTRAL SPECIES	137											ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000179723	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239.n	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT01030000236622	ENSGT00940000159352 #14
Greater amberjack	MODERN SPECIES	189										pik3r1 (ENSSDUG00000012825)	ENSSDUG00000012891	ENSSDUG00000012899	srp19 (ENSSDUG00000012930)	ENSSDUG00000012954	ENSSDUG00000013006	DMTN (ENSSDUG00000013017) #22	ENSSDUG00000013050	mak16 (ENSSDUG00000013093)	ENSSDUG00000013126	ENSSDUG00000013151	ENSSDUG00000013174	ENSSDUG00000013195	ENSSDUG00000013208	ENSSDUG00000013220	ENSSDUG00000013230	nudt18 (ENSSDUG00000013243) #25	ENSSDUG00000013256	ENSSDUG00000013275	si:ch211-191j22.3 (ENSSDUG00000013285)	ercc6l (ENSSDUG00000013307)	adam9 (ENSSDUG00000013344)
Yellowtail amberjack	MODERN SPECIES	3171															ENSSLDG00000002805	ENSSLDG00000002935 #22
Barramundi perch	MODERN SPECIES	37	ENSLCAG00010013819	ENSLCAG00010014092	ENSLCAG00010014094	ENSLCAG00010014097	ENSLCAG00010014101	ENSLCAG00010014112	ENSLCAG00010014119	ENSLCAG00010014120	ENSLCAG00010014123	ENSLCAG00010014128	ENSLCAG00010014140	zgc:101664 (ENSLCAG00010014156)	pik3r1 (ENSLCAG00010014163)	srp19 (ENSLCAG00010014197)	ENSLCAG00010014223	DMTN (ENSLCAG00010014231) #22	ENSLCAG00010014247	ENSLCAG00010014257	mak16 (ENSLCAG00010014275)	ENSLCAG00010014283	ENSLCAG00010014290	ENSLCAG00010014305	nudt18 (ENSLCAG00010014309) #25	ENSLCAG00010014310	ENSLCAG00010014312	si:ch211-191j22.3 (ENSLCAG00010014313)	ercc6l (ENSLCAG00010014315)	adam9 (ENSLCAG00010014362)	OGDH (ENSLCAG00010014796)	ENSLCAG00010015158	ENSLCAG00010015172
Pleuronectoidei	ANCESTRAL SPECIES	57	ENSGT00390000009378	ENSGT00940000155852	ENSGT01100000263483.D.c.b.b.a	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00390000003213	ENSGT00550000074618.b	ENSGT00530000065159	ENSGT00940000155553.e.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Turbot	MODERN SPECIES	21	ENSSMAG00000017039	ENSSMAG00000017128	ENSSMAG00000016994	ENSSMAG00000032892	ENSSMAG00000017003	ENSSMAG00000027844	ENSSMAG00000032244	ENSSMAG00000023322	ENSSMAG00000016922	ENSSMAG00000016886	ENSSMAG00000016871	ENSSMAG00000036934	ENSSMAG00000016827	ENSSMAG00000016803	ENSSMAG00000016784	ENSSMAG00000018485 #22	ENSSMAG00000018475	ENSSMAG00000018454	ENSSMAG00000018432	ENSSMAG00000018414	ENSSMAG00000018386	ENSSMAG00000032311	ENSSMAG00000018346	ENSSMAG00000018311 #25	ENSSMAG00000018307	ENSSMAG00000032668	ENSSMAG00000034622	ENSSMAG00000026005	ENSSMAG00000018241	ENSSMAG00000018156	ENSSMAG00000018121
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	75																ENSCSEG00000018260 #22
Tongue sole	MODERN SPECIES	398	ENSCSEG00000009772	ENSCSEG00000009777	ACTB (ENSCSEG00000009782)	ENSCSEG00000009792	ENSCSEG00000009802	ENSCSEG00000009812	ENSCSEG00000009823	ENSCSEG00000009832	ENSCSEG00000009834	ENSCSEG00000009838	ENSCSEG00000009850	pik3r1 (ENSCSEG00000009859)	srp19 (ENSCSEG00000010039)	ENSCSEG00000010048	mak16 (ENSCSEG00000010069)	ENSCSEG00000010102 #22	ENSCSEG00000010141	ENSCSEG00000010156	ENSCSEG00000010166	ENSCSEG00000010182	ENSCSEG00000010214	mov10b.1 (ENSCSEG00000010226)	ENSCSEG00000010243	nudt18 (ENSCSEG00000010245) #25	ENSCSEG00000010250	ENSCSEG00000010256	si:ch211-191j22.3 (ENSCSEG00000010262)	ercc6l (ENSCSEG00000010268)	adam9 (ENSCSEG00000010289)	ENSCSEG00000010316	ENSCSEG00000010323
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00770000121806.b	ENSGT00940000166999.A	ENSGT00940000164100.A.c.a.d.a.a.b	ENSGT01100000263483.D.d.a.b.a.a.a.a.b	ENSGT00950000182960.a.b	ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a	ENSGT00940000164100.A.c.b.b	ENSGT01100000263538.A.b.h.c.a	ENSGT00940000154311.b	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000002931 #25	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000177802	ENSGT00940000159352 #14
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00770000121806.b	ENSGT00940000166999.A	ENSGT00940000164100.A.c.a.d.a.a.b	ENSGT01100000263483.D.d.a.b.a.a.a.a.b	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878
Climbing perch	MODERN SPECIES	22	ENSATEG00000012086	ENSATEG00000026403	ENSATEG00000012163	ENSATEG00000012135	ENSATEG00000012144	ENSATEG00000011994	ENSATEG00000012201	ENSATEG00000027381	ENSATEG00000012250	ENSATEG00000012313	ENSATEG00000012423	ENSATEG00000012439	ENSATEG00000012442	ENSATEG00000028289	ENSATEG00000012492	ENSATEG00000012562 #22	ENSATEG00000012588	ENSATEG00000012604	ENSATEG00000012637	ENSATEG00000029749	ENSATEG00000012689	ENSATEG00000012742	ENSATEG00000012747	ENSATEG00000025247	ENSATEG00000029864	ENSATEG00000012825	ENSATEG00000012832	ENSATEG00000012864	ENSATEG00000012879	ENSATEG00000012898	ENSATEG00000012912 #25
Siamese fighting fish	MODERN SPECIES	20	ENSBSLG00000017881	sncaip (ENSBSLG00000017899)	PPIC (ENSBSLG00000017923)	ENSBSLG00000017931	sncaip (ENSBSLG00000017983)	ENSBSLG00000017999	ENSBSLG00000018191	ENSBSLG00000018296	ENSBSLG00000018306	ENSBSLG00000018317	ENSBSLG00000018426	ENSBSLG00000019402	ENSBSLG00000019423	srp19 (ENSBSLG00000019470)	ENSBSLG00000019493	DMTN (ENSBSLG00000019506) #22	ENSBSLG00000019770	ENSBSLG00000019809	mak16 (ENSBSLG00000019874)	ENSBSLG00000019891	ENSBSLG00000019942	ENSBSLG00000020177	ENSBSLG00000020184	nudt18 (ENSBSLG00000020979) #25	ENSBSLG00000001727	ENSBSLG00000001730	ercc6l (ENSBSLG00000001742)	adam9 (ENSBSLG00000001800)	OGDH (ENSBSLG00000001950)	ZMIZ2 (ENSBSLG00000002195)	ENSBSLG00000002320
Zig-zag eel	MODERN SPECIES	23	ENSMAMG00000026648	ENSMAMG00000018155	ENSMAMG00000018170	ENSMAMG00000026426	ENSMAMG00000028003	ENSMAMG00000024318	ENSMAMG00000018181	ENSMAMG00000025512	ENSMAMG00000018261	ENSMAMG00000025688	ENSMAMG00000018281	ENSMAMG00000018314	ENSMAMG00000018322	ENSMAMG00000018346	ENSMAMG00000018363	ENSMAMG00000018413 #22	ENSMAMG00000025005	ENSMAMG00000018478	ENSMAMG00000026732	ENSMAMG00000018516	ENSMAMG00000018542	ENSMAMG00000018565 #25	ENSMAMG00000028649	ENSMAMG00000018574	ENSMAMG00000018595	ENSMAMG00000018609	adam9 (ENSMAMG00000018620)	OGDH (ENSMAMG00000018638)	ENSMAMG00000018709	ENSMAMG00000018773	ENSMAMG00000018787 #14
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000177613	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000166999.A	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000177613	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000166999.A	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Ballan wrasse	MODERN SPECIES	3268																DMTN (ENSLBEG00000017665) #22
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT01080000257365.b.a.a.b.b.e	ENSGT00940000166361	ENSGT00390000017837.a.w	ENSGT00510000047925.e	ENSGT00940000156675.d	ENSGT00940000157356	ENSGT00940000153249.a	ENSGT00940000164645.b	ENSGT00390000017833	ENSGT00940000157825.a	ENSGT00510000047107.A	ENSGT00510000047961.c	ENSGT00940000156754.a.b.b	ENSGT00940000155560.k	ENSGT00940000155790	ENSGT00950000182850.a.b.b.a #22	ENSGT00950000183067.a.b.b	ENSGT00940000161629.b	ENSGT00940000159040	ENSGT00940000158754	ENSGT00720000108851	ENSGT00940000161953	ENSGT00390000015483	ENSGT00940000158766	ENSGT00390000006729	ENSGT00940000165556.a.b	ENSGT00940000153232.a.a	ENSGT00940000158418	ENSGT00940000157814	ENSGT00940000165556.a.a	ENSGT00950000182850.a.a.b ##22
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00940000160552	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000157438.c	ENSGT01000000215531	ENSGT00510000047107.B.d	ENSGT00390000015494	ENSGT00940000156161.B	ENSGT00950000182960.a.b	ENSGT00940000164100.A.c.b.b	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT01080000257533	ENSGT01080000257562	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT01080000257365.b.a.a.b.b.e	ENSGT00940000166361	ENSGT00390000017837.a.w	ENSGT00510000047925.e	ENSGT00940000156675.d	ENSGT00940000157356	ENSGT00940000153249.a	ENSGT00940000164645.b	ENSGT00390000017833	ENSGT00940000157825.a	ENSGT00510000047107.A	ENSGT00510000047961.c	ENSGT00940000156754.a.b.b	ENSGT00940000155560.k	ENSGT00940000155790	ENSGT00950000182850.a.b.b.a #22	ENSGT00950000183067.a.b.b	ENSGT00940000161629.b	ENSGT00940000159040	ENSGT00940000158754	ENSGT00720000108851	ENSGT00940000161953	ENSGT00390000015483	ENSGT00940000158766	ENSGT00390000006729	ENSGT00940000165556.a.b	ENSGT00940000153232.a.a	ENSGT00940000158418	ENSGT00940000157814	ENSGT00940000165556.a.a	ENSGT00950000182850.a.a.b ##22
European seabass	MODERN SPECIES	81																ENSDLAG00005005121 #22	ENSDLAG00005005131	ENSDLAG00005028908	ENSDLAG00005006015	ENSDLAG00005028359	ENSDLAG00005003315	ENSDLAG00005014457	ENSDLAG00005032528	ENSDLAG00005029901 #25	ENSDLAG00005027476	ENSDLAG00005003010
Large yellow croaker	MODERN SPECIES	479	ENSLCRG00005005879	MYO18A (ENSLCRG00005005918)	pipox (ENSLCRG00005010976)	SEZ6 (ENSLCRG00005010990)	PHF12 (ENSLCRG00005011037)	dhrs13a.3 (ENSLCRG00005011135)	ENSLCRG00005011136	lhx1a (ENSLCRG00005011137)	ENSLCRG00005011138	ENSLCRG00005011139	ENSLCRG00005011140	pik3r1 (ENSLCRG00005011151)	ENSLCRG00005011536	ENSLCRG00005011538	ENSLCRG00005011542	ENSLCRG00005011545 #22	ENSLCRG00005011553	ENSLCRG00005011559	mak16 (ENSLCRG00005011572)	ENSLCRG00005011597	ENSLCRG00005011612	ENSLCRG00005012071	ENSLCRG00005012072	nudt18 (ENSLCRG00005012073) #25	ENSLCRG00005012074	ENSLCRG00005012076	si:ch211-191j22.3 (ENSLCRG00005012077)	ercc6l (ENSLCRG00005012078)	rxfp1 (ENSLCRG00005012079)	etfdh (ENSLCRG00005012084)	ppid (ENSLCRG00005012129)
Perciformes	ANCESTRAL SPECIES	6	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000177613	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000166999.A	ENSGT01100000263483.D.d.a.a.a.a	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b.a #22
Channel bull blenny	MODERN SPECIES	23	ENSCGOG00000018868	zgc:158343 (ENSCGOG00000018871)	ENSCGOG00000018874	ENSCGOG00000018877	ACTB (ENSCGOG00000018964)	ENSCGOG00000022633	ENSCGOG00000022635	ENSCGOG00000022638	ENSCGOG00000022643	pik3r1 (ENSCGOG00000022701)	ENSCGOG00000023401	ENSCGOG00000023406	srp19 (ENSCGOG00000023477)	ENSCGOG00000023479	sms (ENSCGOG00000000457)	DMTN (ENSCGOG00000000485) #22	ENSCGOG00000000497	ENSCGOG00000000510	mak16 (ENSCGOG00000000547)	ENSCGOG00000000624	ENSCGOG00000000629	ENSCGOG00000000670	ENSCGOG00000000808	ENSCGOG00000000816	nudt18 (ENSCGOG00000000817) #25	ENSCGOG00000000822	ENSCGOG00000000824	si:ch211-191j22.3 (ENSCGOG00000000825)	ercc6l (ENSCGOG00000000827)	adam9 (ENSCGOG00000000859)	OGDH (ENSCGOG00000001069)
Cottioidei	ANCESTRAL SPECIES	27	ENSGT00940000159734	ENSGT00940000160428.b.b	ENSGT00550000075041	ENSGT00940000164784	ENSGT00390000014148.f	ENSGT00940000156231.o.b	ENSGT00940000159868.b #18	ENSGT00940000158016.c.b	ENSGT00940000165894.b	ENSGT01030000234539.b.b.a.j	ENSGT00950000183125.b.a.a.a.b	ENSGT00940000156239	ENSGT00940000156837	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00550000074618.b	ENSGT00530000065159	ENSGT00940000155553.e.b	ENSGT00940000165390.b.d	ENSGT00950000182960.a.b	ENSGT00940000164100.A.c.b.b	ENSGT00940000166999.A	ENSGT00940000169174
Stickleback	MODERN SPECIES	155							ENSGACG00000001124	ENSGACG00000001108	ENSGACG00000001105	OGDH (ENSGACG00000001103)	adam9 (ENSGACG00000001098)	ENSGACG00000001097	ercc6l (ENSGACG00000001096)	srp19 (ENSGACG00000001093)	ENSGACG00000001092	DMTN (ENSGACG00000001091) #22	ENSGACG00000001087	mak16 (ENSGACG00000001081)	ENSGACG00000001078	LRRC2 (ENSGACG00000001076)	ENSGACG00000001075	ENSGACG00000001073	si:ch211-191j22.3 (ENSGACG00000001072)	ENSGACG00000001066	zgc:101664 (ENSGACG00000001064)	pik3r1 (ENSGACG00000001062)
Lumpfish	MODERN SPECIES	24	ENSCLMG00005006049	ENSCLMG00005006050	ENSCLMG00005006056	ENSCLMG00005006717	ENSCLMG00005006718	ENSCLMG00005006720	ppiab (ENSCLMG00005006729)	ENSCLMG00005006732	ENSCLMG00005006733	OGDH (ENSCLMG00005006742)	adam9 (ENSCLMG00005006833)	ercc6l (ENSCLMG00005006902)	srp19 (ENSCLMG00005006903)	ENSCLMG00005006905	ENSCLMG00005006908	ENSCLMG00005006913 #22	ENSCLMG00005006925	ENSCLMG00005006930	ENSCLMG00005006933	mak16 (ENSCLMG00005006936)	ENSCLMG00005006944	ENSCLMG00005006973	ENSCLMG00005008815	ENSCLMG00005008818	nudt18 (ENSCLMG00005008819) #25	ENSCLMG00005008821	si:ch211-191j22.3 (ENSCLMG00005008822)	ENSCLMG00005008824	ENSCLMG00005008828	ENSCLMG00005008830	PIK3R1 (ENSCLMG00005008845)
Tetraodontidae	ANCESTRAL SPECIES	24	ENSGT00940000157488.g	ENSGT00940000165233	ENSGT00940000153745.a.a	ENSGT00390000004149	ENSGT00940000160325.b	ENSGT00730000111371	ENSGT00390000015494	ENSGT00940000156161.B	ENSGT00950000182960.a.b	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00940000167339	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00940000155670
Fugu	MODERN SPECIES	13	ncaph (ENSTRUG00000009464)	vamp8 (ENSTRUG00000028330)	vamp5 (ENSTRUG00000025146)	ENSTRUG00000022284	IDUA (ENSTRUG00000010281)	tnksb (ENSTRUG00000010518)	actbc (ENSTRUG00000004099)	ENSTRUG00000030130	ENSTRUG00000028752	ENSTRUG00000003423	pik3r1 (ENSTRUG00000010930)	ENSTRUG00000033074	ENSTRUG00000011169	srp19 (ENSTRUG00000033163)	ENSTRUG00000023119	ENSTRUG00000023223 #22	ENSTRUG00000025700	ENSTRUG00000011399	mak16 (ENSTRUG00000011544)	ENSTRUG00000011666	MFSD14B (ENSTRUG00000011803)	ENSTRUG00000011912	nudt18 (ENSTRUG00000012000) #25	ENSTRUG00000032315	ENSTRUG00000030978	ercc6l (ENSTRUG00000012053)	adam9 (ENSTRUG00000012083)	ENSTRUG00000027155	ENSTRUG00000012273	OGDH (ENSTRUG00000012276)	ZMIZ2 (ENSTRUG00000021623)
Tetraodon	MODERN SPECIES	3	ogfod2 (ENSTNIG00000018867)	SLC4A5 (ENSTNIG00000018868)	zgc:110329 (ENSTNIG00000018869)	TACR1 (ENSTNIG00000018870)	ncaph (ENSTNIG00000018871)	DNAH2 (ENSTNIG00000018872)	ENSTNIG00000000123	ENSTNIG00000018873	IDUA (ENSTNIG00000018874)	tnksb (ENSTNIG00000018875)	ENSTNIG00000018876	ENSTNIG00000018877	pik3r1 (ENSTNIG00000018878)	ENSTNIG00000018879	srp19 (ENSTNIG00000018880)	ENSTNIG00000018881 #22	mak16 (ENSTNIG00000018882)	ENSTNIG00000001834	ENSTNIG00000018883	ENSTNIG00000018884	ercc6l (ENSTNIG00000001002)	adam9 (ENSTNIG00000005857)	ENSTNIG00000005856	OGDH (ENSTNIG00000005855)	ZMIZ2 (ENSTNIG00000005854)	ENSTNIG00000005853	SLC18A1 (ENSTNIG00000005862) #14	ENSTNIG00000005861	ENSTNIG00000005860	ENSTNIG00000005859	ENSTNIG00000005858
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00940000164100.A.c.a.d.a.b.b	ENSGT00940000155852	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00390000003213	ENSGT00770000121806.b	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000177802
Ovalentaria_B	ANCESTRAL SPECIES	27	ENSGT00390000009378	ENSGT00940000164100.A.c.a.d.a.b.b	ENSGT00940000155852	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00390000003213	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Pomacentridae	ANCESTRAL SPECIES	26	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a	ENSGT00950000182960.a.b	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Bicolor damselfish	MODERN SPECIES	2155													ENSSPAG00000005248	ENSSPAG00000005240	ENSSPAG00000005198	DMTN (ENSSPAG00000005167) #22	ENSSPAG00000005155	ENSSPAG00000005141	mak16 (ENSSPAG00000005102)	ENSSPAG00000005086	ENSSPAG00000005078
Pomacentridae_A	ANCESTRAL SPECIES	34	ENSGT00940000159786	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00390000003213	ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a	ENSGT00950000182960.a.b	ENSGT00940000165390.b.d	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Amphiprion	ANCESTRAL SPECIES	40	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00390000003213	ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a	ENSGT00950000182960.a.b	ENSGT00940000154311.a.b.db.f	ENSGT00940000165390.b.d.db	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837.h	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	19	ENSAPEG00000021870	ENSAPEG00000021924	ENSAPEG00000021929	ENSAPEG00000021942	ENSAPEG00000021964	ENSAPEG00000021999	ENSAPEG00000022005	ENSAPEG00000022026	DMTN (ENSAPEG00000022035) #22	ENSAPEG00000022069	pik3r1 (ENSAPEG00000022087)	ENSAPEG00000022131	ENSAPEG00000022146	srp19 (ENSAPEG00000022170)	ENSAPEG00000022180	ENSAPEG00000022196 #22	ENSAPEG00000022217	mak16 (ENSAPEG00000022237)	ENSAPEG00000022264	ENSAPEG00000022293	ENSAPEG00000022310	ENSAPEG00000022330	ENSAPEG00000022354	nudt18 (ENSAPEG00000022371) #25	ENSAPEG00000022452	ENSAPEG00000022467	si:ch211-191j22.3 (ENSAPEG00000022479)	ercc6l (ENSAPEG00000022499)	ercc6l (ENSAPEG00000022533)	adam9 (ENSAPEG00000022562)	OGDH (ENSAPEG00000022585)
Orange clownfish	MODERN SPECIES	19	nudt18 (ENSAPEG00000022371) #25	ENSAPEG00000022354	ENSAPEG00000022330	ENSAPEG00000022310	ENSAPEG00000022293	ENSAPEG00000022264	mak16 (ENSAPEG00000022237)	ENSAPEG00000022217	ENSAPEG00000022196 #22	ENSAPEG00000022180	srp19 (ENSAPEG00000022170)	ENSAPEG00000022146	ENSAPEG00000022131	pik3r1 (ENSAPEG00000022087)	ENSAPEG00000022069	DMTN (ENSAPEG00000022035) #22	ENSAPEG00000022026	ENSAPEG00000022005	ENSAPEG00000021999	ENSAPEG00000021964	ENSAPEG00000021942	ENSAPEG00000021929	ENSAPEG00000021924	ENSAPEG00000021870	ENSAPEG00000021855	sncaip (ENSAPEG00000021842)	ENSAPEG00000021836	SNX2 (ENSAPEG00000021798)	PPIC (ENSAPEG00000021728)	ENSAPEG00000021653	ENSAPEG00000021634
Spiny chromis	MODERN SPECIES	1230									ENSAPOG00000002284	ENSAPOG00000002274	pik3r1 (ENSAPOG00000002241)	zgc:101664 (ENSAPOG00000002225)	ENSAPOG00000002217	srp19 (ENSAPOG00000002199)	ENSAPOG00000002184	ENSAPOG00000002160 #22
Cichlidae	ANCESTRAL SPECIES	44									ENSGT01100000263483.D.d.a.a.a.b.a.a.b	ENSGT00940000164100.A.c.b.a.a.a.b	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Pseudocrenilabrinae	ANCESTRAL SPECIES	35									ENSGT01100000263483.D.d.a.a.a.b.a.a.b	ENSGT00940000164100.A.c.b.a.a.a.b.a.a	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Nile tilapia	MODERN SPECIES	3											ENSONIG00000001761	ENSONIG00000035270	pik3r1 (ENSONIG00000001749)	srp19 (ENSONIG00000000542)	ENSONIG00000000544	ENSONIG00000000546 #22	ENSONIG00000031578	ENSONIG00000000558	mak16 (ENSONIG00000035837)	ENSONIG00000028234	ENSONIG00000000572	ENSONIG00000000578	ENSONIG00000000585 #25	ENSONIG00000039914	ENSONIG00000035171	si:ch211-191j22.3 (ENSONIG00000036849)	ENSONIG00000027849	ercc6l (ENSONIG00000034572)	adam9 (ENSONIG00000036175)	ENSONIG00000031450	OGDH (ENSONIG00000000590)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	44									ENSGT01100000263483.D.d.a.a.a.b.a.a.b	ENSGT00940000164100.A.c.b.a.a.a.b.a.a	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000177260	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Lyretail cichlid	MODERN SPECIES	519	ENSNBRG00000003245	ENSNBRG00000003160	ENSNBRG00000003116	ENSNBRG00000003092	ENSNBRG00000003083	ENSNBRG00000003060	ENSNBRG00000002998	ENSNBRG00000002983	ENSNBRG00000002967	ENSNBRG00000002957	ENSNBRG00000002940	pik3r1 (ENSNBRG00000002900)	ENSNBRG00000002885	ENSNBRG00000002855	ENSNBRG00000002800	ENSNBRG00000002764 #22	ENSNBRG00000002726	mak16 (ENSNBRG00000002703)	ENSNBRG00000002687	ENSNBRG00000002672	ENSNBRG00000002652	ENSNBRG00000002639
Haplochromini	ANCESTRAL SPECIES	53									ENSGT01100000263483.D.d.a.a.a.b.a.a.b.a.a.a.a	ENSGT00940000164100.A.c.b.a.a.a.b.a.a	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14	ENSGT00760000120401
Burton s mouthbrooder	MODERN SPECIES	867										ENSHBUG00000000157	pik3r1 (ENSHBUG00000006185)	ENSHBUG00000006160	ENSHBUG00000006151	srp19 (ENSHBUG00000006131)	ENSHBUG00000006110	ENSHBUG00000006098 #22	ENSHBUG00000006076	ENSHBUG00000006056	mak16 (ENSHBUG00000006023)	ENSHBUG00000006000	ENSHBUG00000005969	ENSHBUG00000005944
Haplochromini_A	ANCESTRAL SPECIES	60									ENSGT01100000263483.D.d.a.a.a.b.a.a.b.a.a.a.a	ENSGT00940000164100.A.c.b.a.a.a.b.a.a	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14	ENSGT00760000120401
Haplochromini_B	ANCESTRAL SPECIES	69									ENSGT01100000263483.D.d.a.a.a.b.a.a.b.a.a.a.a	ENSGT00940000164100.A.c.b.a.a.a.b.a.a	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14	ENSGT00760000120401
Zebra mbuna	MODERN SPECIES	1094	adam9 (ENSMZEG00005000905)	ENSMZEG00005001545	ercc6l (ENSMZEG00005001556)	si:ch211-191j22.3 (ENSMZEG00005001564)	ENSMZEG00005001572	nudt18 (ENSMZEG00005001576) #25	ENSMZEG00005001587	ENSMZEG00005001596	ENSMZEG00005001615	ENSMZEG00005001649	pik3r1 (ENSMZEG00005001670)	ENSMZEG00005001719	ENSMZEG00005001732	srp19 (ENSMZEG00005001765)	ENSMZEG00005001787	ENSMZEG00005001854 #22	ENSMZEG00005001870	ENSMZEG00005001885	mak16 (ENSMZEG00005001916)	ENSMZEG00005001955	ENSMZEG00005001977	ENSMZEG00005002027	ENSMZEG00005002038	ENSMZEG00005002051	ENSMZEG00005002061	ENSMZEG00005002116	ENSMZEG00005002150
Eastern happy	MODERN SPECIES	3	ENSACLG00000005592	ENSACLG00000005600	ENSACLG00000005625	ENSACLG00000005627	ENSACLG00000005638	ENSACLG00000005652	ENSACLG00000005659	ENSACLG00000005669	ENSACLG00000005679	ENSACLG00000005680	pik3r1 (ENSACLG00000006175)	ENSACLG00000006211	ENSACLG00000006234	srp19 (ENSACLG00000006259)	ENSACLG00000006289	ENSACLG00000006299 #22	ENSACLG00000006314	ENSACLG00000006329	mak16 (ENSACLG00000006342)	ENSACLG00000006356	ENSACLG00000006372	ENSACLG00000006394	ENSACLG00000006421	nudt18 (ENSACLG00000006434) #25	ENSACLG00000006499	si:ch211-191j22.3 (ENSACLG00000006533)	ercc6l (ENSACLG00000006555)	adam9 (ENSACLG00000007282)	OGDH (ENSACLG00000007335)	ENSACLG00000007416	ENSACLG00000007444
Midas cichlid	MODERN SPECIES	13			ENSACIG00000005234	ENSACIG00000005223	ENSACIG00000005215	ENSACIG00000005208	ENSACIG00000005203	ENSACIG00000005198	ENSACIG00000005185	pik3r1 (ENSACIG00000005149)	zgc:101664 (ENSACIG00000005120)	ENSACIG00000005098	srp19 (ENSACIG00000005082)	ENSACIG00000005022	ENSACIG00000005016	DMTN (ENSACIG00000005003) #22	ENSACIG00000004993	ENSACIG00000004978	mak16 (ENSACIG00000004962)	ENSACIG00000004949	ENSACIG00000004922	ENSACIG00000004907	ENSACIG00000004901	nudt18 (ENSACIG00000004827) #25	ENSACIG00000004815	si:ch211-191j22.3 (ENSACIG00000004804)	ENSACIG00000004790	adam9 (ENSACIG00000004568)	OGDH (ENSACIG00000004510)	ZMIZ2 (ENSACIG00000004466)	ENSACIG00000004459
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000166999.A	ENSGT01100000263483.D.d.a.a.a.a.f.b.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.b	ENSGT01100000263483.D.d.a.a.a.a.f.a.a	ENSGT00940000164100.A.c.b.b.e.b	ENSGT00940000177061	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000177802
Oryzias	ANCESTRAL SPECIES	83											ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00390000004950	ENSGT00550000074618.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837
Oryzias_b	ANCESTRAL SPECIES	79											ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00390000004950	ENSGT00550000074618.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000154821.a.b	ENSGT00940000156085	ENSGT01070000253744.b.b.e	ENSGT00940000156290.a	ENSGT00940000156035.z	ENSGT00940000165677
Indian medaka	MODERN SPECIES	754	wsb1 (ENSOMEG00000008904)	pipox (ENSOMEG00000008917)	PHF12 (ENSOMEG00000000222)	ENSOMEG00000008973	dhrs13b.1 (ENSOMEG00000008979)	dhrs13a.3 (ENSOMEG00000008999)	ENSOMEG00000009010	ENSOMEG00000009030	ENSOMEG00000009081	ENSOMEG00000009100	ENSOMEG00000009115	tncb (ENSOMEG00000009149)	srp19 (ENSOMEG00000009178)	ENSOMEG00000009200	ENSOMEG00000009229	ENSOMEG00000009267 #22	ENSOMEG00000009290	mak16 (ENSOMEG00000009317)	ENSOMEG00000009345	ENSOMEG00000009382	ENSOMEG00000009414	ENSOMEG00000009423	nudt18 (ENSOMEG00000009443) #25	ENSOMEG00000009458	si:ch211-191j22.3 (ENSOMEG00000009470)	ercc6l (ENSOMEG00000009481)	ENSOMEG00000009489	ENSOMEG00000009500	ENSOMEG00000009736	ENSOMEG00000009814	ENSOMEG00000009825
Javanese ricefish	MODERN SPECIES	23	ENSOJAG00000002611	ENSOJAG00000002536	ercc6l (ENSOJAG00000002485)	ENSOJAG00000002471	ENSOJAG00000002462	nudt18 (ENSOJAG00000002453) #25	ENSOJAG00000002445	ENSOJAG00000008033	ENSOJAG00000007931	ENSOJAG00000007889	tncb (ENSOJAG00000004606)	ENSOJAG00000003981	srp19 (ENSOJAG00000003972)	ENSOJAG00000003936	ENSOJAG00000003921	ENSOJAG00000003858 #22	ENSOJAG00000003833	ENSOJAG00000003796	ENSOJAG00000003767	camsap1b (ENSOJAG00000003465)	ubac1 (ENSOJAG00000003406)	inpp5e (ENSOJAG00000002863)	PTGS1 (ENSOJAG00000002196)	LHX6 (ENSOJAG00000001953)	krt1-c5 (ENSOJAG00000001936)	ENSOJAG00000001912	tal2 (ENSOJAG00000001890)	ugt2b5 (ENSOJAG00000001871)	ENSOJAG00000001853	RAB27B (ENSOJAG00000001841)	ST8SIA3 (ENSOJAG00000001828)
Oryzias_a	ANCESTRAL SPECIES	122											ENSGT00940000164876.a	ENSGT00940000155188.B.b.a	ENSGT00390000004950	ENSGT00550000074618.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00940000156837
Japanese Medaka HdrR	MODERN SPECIES	23										ENSORLG00000021820	tncb (ENSORLG00000024985)	ENSORLG00000030312	srp19 (ENSORLG00000028267)	ENSORLG00000022745	ENSORLG00000025060	ENSORLG00000028241 #22	ENSORLG00000022056	ENSORLG00000029921	mak16 (ENSORLG00000019058)	ENSORLG00000027850	spinb (ENSORLG00000030180)	ENSORLG00000019781	ENSORLG00000027770	nudt18 (ENSORLG00000028154) #25	ENSORLG00000025280	ercc6l (ENSORLG00000024240)	si:ch211-191j22.3 (ENSORLG00000026703)	ftcd (ENSORLG00000018636)	fxn (ENSORLG00000030340)	ENSORLG00000018611	RUSC2 (ENSORLG00000023472)
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00390000003213	ENSGT00770000121806.b	ENSGT00940000154311.b	ENSGT00940000165390.b.d	ENSGT00940000160570	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000177802
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00940000155798	ENSGT00940000159470	ENSGT00390000001485	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000166999.A	ENSGT00940000164100.A.c.b.b.e.a.b	ENSGT00940000165390.b.d	ENSGT00940000160570	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Poeciliinae	ANCESTRAL SPECIES	38		ENSGT00940000164100.A.d	ENSGT00950000182960.a.b.n	ENSGT00940000166560	ENSGT01100000263483.D.d.a.a.a.b.b	ENSGT01100000263483.D.d.a.a.a.a.f.a.a.a	ENSGT00940000164100.A.c.b.b.e.a.b	ENSGT00940000165390.b.d	ENSGT00940000160570	ENSGT00940000153246.b	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT01100000264050	ENSGT00610000087474	ENSGT00940000177260	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000159352 #14
Poecilia	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b.a #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b.a #22
Amazon molly	MODERN SPECIES	1095																DMTN (ENSPFOG00000001291) #22	ENSPFOG00000001228	ENSPFOG00000001167	mak16 (ENSPFOG00000001068)	ENSPFOG00000000999	ENSPFOG00000000865
Sailfin molly	MODERN SPECIES	1882																DMTN (ENSPLAG00000000530) #22	ENSPLAG00000022484	ENSPLAG00000022515	mak16 (ENSPLAG00000022551)	ENSPLAG00000022582	ENSPLAG00000022628	ENSPLAG00000022663
Platyfish	MODERN SPECIES	3	ENSXMAG00000027923	ENSXMAG00000026149	ENSXMAG00000015179	ENSXMAG00000015170	ENSXMAG00000029634	ENSXMAG00000025223	ENSXMAG00000023783	ENSXMAG00000015158	ENSXMAG00000015148	ENSXMAG00000021944	pik3r1 (ENSXMAG00000015104)	ENSXMAG00000015103	ENSXMAG00000025052	srp19 (ENSXMAG00000029788)	ENSXMAG00000025608	DMTN (ENSXMAG00000029276) #22	ENSXMAG00000000652	ENSXMAG00000015075	mak16 (ENSXMAG00000029335)	ENSXMAG00000015031	ENSXMAG00000015027	ENSXMAG00000015001	ENSXMAG00000027258	nudt18 (ENSXMAG00000015000) #25	ENSXMAG00000019886	si:ch211-191j22.3 (ENSXMAG00000014998)	ENSXMAG00000024111	ercc6l (ENSXMAG00000000948)	adam9 (ENSXMAG00000000901)	OGDH (ENSXMAG00000000877)	ZMIZ2 (ENSXMAG00000004962)
NAME_4	ANCESTRAL SPECIES	143															ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000179723	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT01100000264050	ENSGT00940000177260	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j
Mummichog	MODERN SPECIES	422															ENSFHEG00000007001	DMTN (ENSFHEG00000007017) #22	ENSFHEG00000000695	mak16 (ENSFHEG00000007084)	ENSFHEG00000007102	MFSD14B (ENSFHEG00000007127)	ENSFHEG00000007131	ENSFHEG00000007143	ENSFHEG00000007164 #25	ENSFHEG00000007177	ENSFHEG00000007193	si:ch211-191j22.3 (ENSFHEG00000007197)	ercc6l (ENSFHEG00000007205)	ercc6l (ENSFHEG00000007269)	ENSFHEG00000007279	adam9 (ENSFHEG00000007313)	OGDH (ENSFHEG00000007381)
Aplocheiloidei	ANCESTRAL SPECIES	45	ENSGT00940000154779.a.b.b	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00940000166999.A	ENSGT01100000263483.D.d.a.a.a.a.f.b.b	ENSGT00950000182960.a.b	ENSGT01100000263483.D.d.a.a.a.a.f.a.a.a	ENSGT00940000164100.A.c.b.b.e.a.b	ENSGT00940000165390.b.d	ENSGT00940000160570	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b	ENSGT00390000004950	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00390000012859	ENSGT00950000182925.B.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000176961	ENSGT00390000002931 #25	ENSGT00980000198657	ENSGT00610000087474	ENSGT00940000156837	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.b	ENSGT01030000234539.b.b.a.j	ENSGT00940000165894.b	ENSGT00940000177802	ENSGT00940000159352 #14
Mangrove rivulus	MODERN SPECIES	189	ENSKMAG00000010779	ENSKMAG00000010796	ENSKMAG00000010820	ENSKMAG00000010832	ENSKMAG00000010851	ENSKMAG00000010882	ENSKMAG00000010997	ENSKMAG00000011012	ENSKMAG00000011025	ENSKMAG00000011036	pik3r1 (ENSKMAG00000011062)	ENSKMAG00000011118	ENSKMAG00000011131	srp19 (ENSKMAG00000011155)	ENSKMAG00000011190	ENSKMAG00000011242 #22	ENSKMAG00000011271	ENSKMAG00000011301	mak16 (ENSKMAG00000011338)	ENSKMAG00000011371	ENSKMAG00000011395	ENSKMAG00000011422	ENSKMAG00000011441	ENSKMAG00000011460	nudt18 (ENSKMAG00000011494) #25	ENSKMAG00000011561	si:ch211-191j22.3 (ENSKMAG00000011571)	ercc6l (ENSKMAG00000011587)	ENSKMAG00000011613	ENSKMAG00000011628	ENSKMAG00000011662
Turquoise killifish	MODERN SPECIES	1620	ENSNFUG00015006529	ENSNFUG00015006525	ENSNFUG00015006522	ENSNFUG00015006513	ENSNFUG00015006466	ENSNFUG00015006447	ENSNFUG00015006432	ENSNFUG00015006423	ENSNFUG00015006407	ENSNFUG00015006396	pik3r1 (ENSNFUG00015005727)	ENSNFUG00015005603	OLA.5773 (ENSNFUG00015005600)	SRP19 (ENSNFUG00015005596)	ENSNFUG00015005586	ENSNFUG00015005579 #22	ENSNFUG00015005545	mak16 (ENSNFUG00015005506)	SPINA (ENSNFUG00015005491)	ENSNFUG00015005414	ENSNFUG00015005383	ENSNFUG00015005375	nudt18 (ENSNFUG00015005363) #25	ENSNFUG00015005357	si:ch211-191j22.3 (ENSNFUG00015005343)	ercc6l (ENSNFUG00015005299)	ENSNFUG00015005173	OGDH (ENSNFUG00015005105)	ZMIZ2 (ENSNFUG00015005083)	ENSNFUG00015005065	ENSNFUG00015005053
Cod	MODERN SPECIES	19	ENSGMOG00000024175	ENSGMOG00000031281	ENSGMOG00000031253 #14	ENSGMOG00000026884	ENSGMOG00000012029	ENSGMOG00000025497	ENSGMOG00000028623	OGDH (ENSGMOG00000012010)	ENSGMOG00000011997	ENSGMOG00000024993	ENSGMOG00000022934	ENSGMOG00000032021	ENSGMOG00000036467	ENSGMOG00000000735 #25	ENSGMOG00000000716	ENSGMOG00000013926 #22	ENSGMOG00000034033	ENSGMOG00000027738	ENSGMOG00000033429	ENSGMOG00000034651	ENSGMOG00000000532	ENSGMOG00000000511	ENSGMOG00000027650	ENSGMOG00000012563	ENSGMOG00000008583	ENSGMOG00000000426	ENSGMOG00000003264	ENSGMOG00000003281	zgc:101664 (ENSGMOG00000003300)	ENSGMOG00000003321	ENSGMOG00000037248
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	445															ENSGT00940000167390	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00940000164380.b
Clupeocephala	ANCESTRAL SPECIES	80	ENSGT00940000157488.h	ENSGT00950000183012.A.a.c.a	ENSGT00950000182825.B	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00900000140979.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000156481.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b	ENSGT01030000234539.b.b.a.i	ENSGT00940000165894.b	ENSGT00940000159152.d	ENSGT00940000158107.a.a	ENSGT00940000164321.d	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00550000074946	ENSGT00530000063672.b
Otomorpha	ANCESTRAL SPECIES	325						ENSGT00390000006780	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.a #22	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b	ENSGT00940000165894.a	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00490000043388.a
Otophysi	ANCESTRAL SPECIES	188	ENSGT00950000183127.c.b.c.c.a	ENSGT00940000161847.b.a.e.b.a.a	ENSGT00940000154637	ENSGT00940000171034	ENSGT00390000013684	ENSGT00730000111077	ENSGT00390000006780	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b	ENSGT00940000165894.a	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00490000043388.a
Characiphysae	ANCESTRAL SPECIES	106	ENSGT00940000161847.b.a.e.b.b.a	ENSGT00950000183127.c.b.c.c.a	ENSGT00940000161847.b.a.e.b.b.b	ENSGT00940000154637	ENSGT00390000013684	ENSGT00730000111077	ENSGT00390000006780	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT01050000245296	ENSGT00940000154184.A	ENSGT00940000160048	ENSGT00940000159868.b #18	ENSGT00940000156168.B #17	ENSGT00940000154078.a.b #16	ENSGT00940000156515.a	ENSGT00940000179951	ENSGT00940000162372.a	ENSGT00940000155307.a.a	ENSGT00940000154885.B	ENSGT00940000154885.A.f	ENSGT00940000164508	ENSGT00940000165280.a.a	ENSGT00390000007349.b
Channel catfish	MODERN SPECIES	24	ENSIPUG00000002674	ENSIPUG00000002600	ENSIPUG00000002514	ENSIPUG00000002508	sf3a1 (ENSIPUG00000002470)	pold2 (ENSIPUG00000002459)	ENSIPUG00000002439	elmod3 (ENSIPUG00000002413)	star (ENSIPUG00000002357)	ENSIPUG00000002325	ENSIPUG00000002320	LSM1 (ENSIPUG00000002312)	bag4 (ENSIPUG00000002306)	DUSP26 (ENSIPUG00000002301)	rsph14 (ENSIPUG00000002293)	DMTN (ENSIPUG00000002277) #22	ENSIPUG00000002264	ENSIPUG00000002252	crybb2 (ENSIPUG00000002243)	kazald3 (ENSIPUG00000002231)	Dok2 (ENSIPUG00000002223) #18	ENSIPUG00000002216	ENSIPUG00000002208	ENSIPUG00000002185	ENSIPUG00000002177	ENSIPUG00000002166 #17	ENSIPUG00000002038	ENSIPUG00000002005 #16	msi1 (ENSIPUG00000001976)	ENSIPUG00000001969	TMEM233 (ENSIPUG00000001967)
Characiphysae_b	ANCESTRAL SPECIES	95	ENSGT00940000161847.b.a.e.b.b.a	ENSGT00950000183127.c.b.c.c.a	ENSGT00940000161847.b.a.e.b.b.b	ENSGT00940000154637	ENSGT00390000013684	ENSGT00730000111077	ENSGT00390000006780	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00940000160048	ENSGT00940000159868.b #18	ENSGT00940000156168.B #17	ENSGT00940000154078.a.b #16	ENSGT00940000156515.a	ENSGT00940000179951	ENSGT00940000162372.a	ENSGT00940000155307.a.a	ENSGT00940000154885.B	ENSGT00940000154885.A.f	ENSGT00940000164508	ENSGT00940000165280.a.a	ENSGT00390000007349.b	ENSGT01030000235079	ENSGT00940000153818.a.b.a.a
Characoidei	ANCESTRAL SPECIES	88	ENSGT00940000161847.b.a.e.b.b.b.a.b	ENSGT00950000183127.c.b.c.c.a	ENSGT00940000161847.b.a.e.b.b.b.a.a	ENSGT00940000154637	ENSGT00390000013684	ENSGT00730000111077	ENSGT00390000006780	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT01050000245296	ENSGT00940000154184.A	ENSGT00940000162556.G.c.b.a.a.a	ENSGT00940000162556.A.b	ENSGT00940000160048	ENSGT00940000154078.a.b #16	ENSGT00940000156515.a	ENSGT00940000179951	ENSGT00940000162372.a	ENSGT00940000155307.a.a	ENSGT00940000154885.B	ENSGT00940000154885.A.f	ENSGT00940000164508	ENSGT00940000165280.a.a	ENSGT00390000007349.b
Red-bellied piranha	MODERN SPECIES	712																DMTN (ENSPNAG00000009696) #22	ENSPNAG00000009387	ENSPNAG00000001311	ENSPNAG00000009353	ENSPNAG00000009342	crybb2 (ENSPNAG00000009334)	kazald3 (ENSPNAG00000004671)	ENSPNAG00000029686
Mexicana tetra	MODERN SPECIES	21	ENSAMXG00000005227	ENSAMXG00000005248	slc7a4 (ENSAMXG00000039335)	ENSAMXG00000005291	ENSAMXG00000038773	sf3a1 (ENSAMXG00000005382)	pold2 (ENSAMXG00000005390)	ENSAMXG00000005403	ELMOD3 (ENSAMXG00000005425)	star (ENSAMXG00000005430)	ENSAMXG00000005436	lsm1 (ENSAMXG00000005441)	bag4 (ENSAMXG00000005454)	DUSP26 (ENSAMXG00000005462)	rsph14 (ENSAMXG00000040467)	DMTN (ENSAMXG00000005473) #22	ENSAMXG00000030981	ENSAMXG00000041211	ENSAMXG00000041781	ENSAMXG00000005496	ENSAMXG00000041066	crybb2 (ENSAMXG00000005503)	kazald3 (ENSAMXG00000034815)	DOK2 (ENSAMXG00000034671) #18	gfra2a (ENSAMXG00000039901) #17	LZTS1 (ENSAMXG00000033716) #16	msi1b (ENSAMXG00000038960)	ENSAMXG00000033355	ENSAMXG00000030431	TMEM233 (ENSAMXG00000031722)	prkab1b (ENSAMXG00000005605)
Electric eel	MODERN SPECIES	1010														DUSP26 (ENSEEEG00000008417)	rsph14 (ENSEEEG00000008418)	DMTN (ENSEEEG00000008421) #22	ENSEEEG00000008424	ENSEEEG00000008425	kazald3 (ENSEEEG00000008426)	ENSEEEG00000008428
Cyprinoidei	ANCESTRAL SPECIES	47	ENSGT00390000003453.a.c	ENSGT00940000158379	ENSGT00940000178229	ENSGT01060000248556.A.a.a.a.b.b	ENSGT00390000017780.e	ENSGT00390000008631.b	ENSGT00940000166169	ENSGT00940000158323.h	ENSGT00390000009488	ENSGT00940000155477	ENSGT00940000164321.c	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931.d #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b	ENSGT00940000165894.a	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT01090000260040.b.a.b.ab.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1539																ENSGT00950000182850.a.b.b.b.a.a #22	ENSGT00950000183067.a.b.b.jc.a
Cyprininae_a	ANCESTRAL SPECIES	314																ENSGT00950000182850.a.b.b.b.a.a #22	ENSGT00950000183067.a.b.b.jc.b	ENSGT00950000182850.a.b.b.b.a.b.a #22	ENSGT00950000182936.a.b.b.cb #23	ENSGT00390000002931.d.a.a #25	ENSGT00940000156239.l	ENSGT00950000183125.b.a.a.a.a.b.a	ENSGT00940000165894.a.g	ENSGT00940000159352.d #14	ENSGT00390000003878.e	ENSGT00390000012859.a	ENSGT00940000154285.a.b.b.b.h.a	ENSGT01090000260040.b.a.b.ab.b	ENSGT00390000001804.kb.a	ENSGT00940000154663.a.a.a	ENSGT00940000157106.g.a.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	23	ubap2b (ENSCCRG00000064935)	ENSCCRG00000046702	zgc:154046 (ENSCCRG00000046719)	timm17b (ENSCCRG00000019508)	praf2 (ENSCCRG00000064201)	ENSCCRG00000053910	ENSCCRG00000074957	ENSCCRG00000046751	ENSCCRG00000017929	ENSCCRG00000005458	ENSCCRG00000008278	star (ENSCCRG00000008294)	ENSCCRG00000073368	lsm1 (ENSCCRG00000025434)	bag4 (ENSCCRG00000066866)	DMTN (ENSCCRG00000079669) #22	ENSCCRG00000077845	fhip2b (ENSCCRG00000012829) #23	NUDT18 (ENSCCRG00000072588) #25	nudt18 (ENSCCRG00000075801) #25	adam9 (ENSCCRG00000012815)	ENSCCRG00000006669	ppiaa (ENSCCRG00000076657)	ENSCCRG00000017465 #14	ENSCCRG00000068595	ENSCCRG00000065260	ENSCCRG00000081910	ENSCCRG00000074516	ENSCCRG00000047245	ENSCCRG00000036590	ENSCCRG00000068108
Common carp reference	MODERN SPECIES	17	ubap2b (ENSCCRG00000043930)	ENSCCRG00000010127	ENSCCRG00000010130	zgc:154046 (ENSCCRG00000010184)	timm17b (ENSCCRG00000078372)	praf2 (ENSCCRG00000029553)	ENSCCRG00000069860	ENSCCRG00000041041	ENSCCRG00000021822	ENSCCRG00000049424	star (ENSCCRG00000062266)	ENSCCRG00000008323	lsm1 (ENSCCRG00000046684)	bag4 (ENSCCRG00000053756)	ENSCCRG00000046688	DMTN (ENSCCRG00000046695) #22	ENSCCRG00000077854	fhip2b (ENSCCRG00000053957) #23	nudt18 (ENSCCRG00000012826) #25	adam9 (ENSCCRG00000012766)	ENSCCRG00000029321	ppiaa (ENSCCRG00000007958)	ENSCCRG00000038399 #14	ENSCCRG00000040925	ENSCCRG00000017564	ENSCCRG00000082170	ENSCCRG00000022767	ywhabb (ENSCCRG00000068705)	ENSCCRG00000000281	ENSCCRG00000000226	ENSCCRG00000077469
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	605																ENSGT00950000182850.a.b.b.b.a.b.a #22	ENSGT00950000183067.a.b.b.jc.b	ENSGT00950000182936.a.b.b.cb #23	ENSGT00390000002931.d.a.a #25	ENSGT00940000156239.l	ENSGT00950000183125.b.a.a.a.a.b.a	ENSGT00940000165894.a.g	ENSGT00940000159352.d #14	ENSGT00390000003878.e	ENSGT00390000012859.a	ENSGT00940000154285.a.b.b.b.h.a	ENSGT01090000260040.b.a.b.ab.b	ENSGT00390000001804.kb.a	ENSGT00940000154663.a.a.b.b	ENSGT00940000157106.g.a.b	ENSGT00940000157936.p.b
Cyprininae_a	ANCESTRAL SPECIES	314														ENSGT00950000182850.a.b.b.b.a.a #22	ENSGT00950000183067.a.b.b.jc.b	ENSGT00950000182850.a.b.b.b.a.b.a #22	ENSGT00950000182936.a.b.b.cb #23	ENSGT00390000002931.d.a.a #25	ENSGT00940000156239.l	ENSGT00950000183125.b.a.a.a.a.b.a	ENSGT00940000165894.a.g	ENSGT00940000159352.d #14	ENSGT00390000003878.e	ENSGT00390000012859.a	ENSGT00940000154285.a.b.b.b.h.a	ENSGT01090000260040.b.a.b.ab.b	ENSGT00390000001804.kb.a	ENSGT00940000154663.a.a.a	ENSGT00940000157106.g.a.b	ENSGT00940000157936.p.b	ENSGT00940000153391.c.b.a.j.a.d
Golden-line barbel	MODERN SPECIES	1960																DMTN (ENSSGRG00000013394) #22	fhip2b (ENSSGRG00000013398) #23	ENSSGRG00000013400
Goldfish	MODERN SPECIES	2832	ENSCARG00000055907	rfk (ENSCARG00000055899)	pcsk5b (ENSCARG00000051874)	ubap2b (ENSCARG00000051643)	ENSCARG00000051026	zgc:154046 (ENSCARG00000047720)	praf2 (ENSCARG00000047567)	ENSCARG00000047371	AEBP1 (ENSCARG00000046981)	ELMOD3 (ENSCARG00000046948)	star (ENSCARG00000046900)	ENSCARG00000046750	lsm1 (ENSCARG00000046705)	bag4 (ENSCARG00000046693)	DUSP26 (ENSCARG00000046682)	DMTN (ENSCARG00000046634) #22	ENSCARG00000046618	fhip2b (ENSCARG00000046578) #23	ENSCARG00000046546	nudt18 (ENSCARG00000046536) #25	adam9 (ENSCARG00000046331)	ENSCARG00000045228	ENSCARG00000045182	ppiaa (ENSCARG00000045152)	SLC18A1 (ENSCARG00000044873) #14	TTI2 (ENSCARG00000044841)	mak16 (ENSCARG00000044828)	ENSCARG00000044817	ywhabb (ENSCARG00000044796)	EIF2S2 (ENSCARG00000044765)	chmp4bb (ENSCARG00000044736)
Cyprininae	ANCESTRAL SPECIES	202	ENSGT00390000003453.a.c.b	ENSGT01060000248556.A.a.a.a.b.b.a	ENSGT00390000017780.e.x	ENSGT00390000008631.b.b	ENSGT00940000154755.lb.b	ENSGT00940000158323.h.b	ENSGT00390000009488.a	ENSGT00940000155477.a	ENSGT00940000164321.c.k	ENSGT00940000164321.c.l.b	ENSGT00730000111133.y	ENSGT00940000158936.a	ENSGT00940000158936.b	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a.b.b #22	ENSGT00950000182936.a.b.b.bb #23	ENSGT00390000002931.c #25	ENSGT00390000002931.d.b #25	ENSGT00940000156239.k	ENSGT00950000183125.b.a.a.a.a.b.b	ENSGT00940000165894.a.h	ENSGT00940000159352.c #14	ENSGT00390000012859.b	ENSGT01090000260040.b.a.b.ab.a	ENSGT00390000001804.kb.b	ENSGT00940000154663.a.a.b.a	ENSGT00940000157106.g.a.a	ENSGT00940000157936.p.a	ENSGT00940000153391.c.b.a.j.a.c	ENSGT00940000161534.cc
Cyprininae_a	ANCESTRAL SPECIES	96	ENSGT00390000003453.a.c.b	ENSGT00940000158379.j	ENSGT01060000248556.A.a.a.a.b.b.a	ENSGT00390000017780.e.x	ENSGT00390000008631.b.b	ENSGT00940000154755.lb.b	ENSGT00940000158323.h.b	ENSGT00390000009488.a	ENSGT00940000155477.a	ENSGT00940000164321.c.k	ENSGT00730000111133.y	ENSGT00940000158936.a	ENSGT00940000158936.b	ENSGT00940000158107.a.b	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a.b.b #22	ENSGT00950000182936.a.b.b.bb #23	ENSGT00390000002931.c #25	ENSGT00390000002931.d.b #25	ENSGT00940000156239.k	ENSGT00950000183125.b.a.a.a.a.b.b	ENSGT00940000165894.a.h	ENSGT00940000159352.c #14	ENSGT00390000012859.b	ENSGT01090000260040.b.a.b.ab.a	ENSGT00390000001804.kb.b	ENSGT00940000154663.a.a.b.a	ENSGT00940000157106.g.a.a	ENSGT00940000157936.p.a	ENSGT00940000153391.c.b.a.j.a.c	ENSGT00940000161534.cc
Golden-line barbel	MODERN SPECIES	1659						ENSSGRG00000025360	ENSSGRG00000025347	ELMOD3 (ENSSGRG00000025334)	star (ENSSGRG00000025328)	ENSSGRG00000025327	ENSSGRG00000025326	lsm1 (ENSSGRG00000025320)	bag4 (ENSSGRG00000025318)	DUSP26 (ENSSGRG00000025317)	rsph14 (ENSSGRG00000025316)	DMTN (ENSSGRG00000025315) #22	ENSSGRG00000025310 #23
Goldfish	MODERN SPECIES	48	FOXB2 (ENSCARG00000028735)	rfk (ENSCARG00000028727)	pcsk5b (ENSCARG00000022295)	ubap2b (ENSCARG00000022036)	zgc:154046 (ENSCARG00000021561)	timm17b (ENSCARG00000021523)	praf2 (ENSCARG00000021505)	ENSCARG00000021499	ENSCARG00000021479	ENSCARG00000021181	ELMOD3 (ENSCARG00000021145)	star (ENSCARG00000021129)	ENSCARG00000020812	bag4 (ENSCARG00000020781)	rsph14 (ENSCARG00000020769)	DMTN (ENSCARG00000020748) #22	ENSCARG00000020711	lsm1 (ENSCARG00000020691)	ENSCARG00000020666	fhip2b (ENSCARG00000020605) #23	NUDT18 (ENSCARG00000020590) #25	adam9 (ENSCARG00000020205)	OGDH (ENSCARG00000018398)	ppiaa (ENSCARG00000018264)	SLC18A1 (ENSCARG00000018158) #14	mak16 (ENSCARG00000018140)	ENSCARG00000018005	YWHAB (ENSCARG00000017971)	ENSCARG00000017930	chmp4bb (ENSCARG00000017916)	pabpc1l (ENSCARG00000017880)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b.b.a #22
Protacanthopterygii	ANCESTRAL SPECIES	140					ENSGT00940000155591.i	ENSGT00940000159729.k	ENSGT00390000014476	ENSGT00940000160428.b.a.b	ENSGT00550000075041	ENSGT00940000164784	ENSGT00390000014148.f	ENSGT00940000156231.o.b	ENSGT00940000158016.c.a.a	ENSGT00940000159868.b #18	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000183067.a.b.b	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00940000165894.a	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00950000182925.A	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00390000004950.b	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b
Salmoninae	ANCESTRAL SPECIES	200			ENSGT00940000156744.o.a.b	ENSGT00940000161616.c.r	ENSGT00940000155670	ENSGT00940000155178.ce	ENSGT00940000155434	ENSGT00390000014476	ENSGT00940000160428.b.a.b	ENSGT00550000075041	ENSGT00940000164784	ENSGT00390000014148.f	ENSGT00940000158016.c.a.a	ENSGT00940000159868.b #18	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000183067.a.b.b.vb.a	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b.c	ENSGT01030000234539.b.b.a.i.n	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00950000182925.A.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000155553.e.b	ENSGT00530000065159
Huchen	MODERN SPECIES	103	PRDM12 (ENSHHUG00000015277)	C5 (ENSHHUG00000014930)	rab14 (ENSHHUG00000014856)	ENSHHUG00000014846	ENSHHUG00000014825	ENSHHUG00000014744	cfap77 (ENSHHUG00000014738)	BARHL1 (ENSHHUG00000014735)	DDX31 (ENSHHUG00000014728)	ak8 (ENSHHUG00000014699)	tsc1a (ENSHHUG00000014664)	grin1b (ENSHHUG00000014425)	kazald3 (ENSHHUG00000014412)	ENSHHUG00000014407 #18	rsph14 (ENSHHUG00000014392)	DMTN (ENSHHUG00000014351) #22	ENSHHUG00000014332	fhip2b (ENSHHUG00000014268) #23	nudt18 (ENSHHUG00000014261) #25	adam9 (ENSHHUG00000014071)	OGDH (ENSHHUG00000013738)	ZMIZ2 (ENSHHUG00000013525)	ENSHHUG00000013520
Salmoninae_a	ANCESTRAL SPECIES	47	ENSGT00530000064123.j	ENSGT00940000156744.o.a.b	ENSGT00940000161616.c.r	ENSGT00940000155670	ENSGT00940000155178.ce	ENSGT00940000155434	ENSGT00390000014476	ENSGT00940000160428.b.a.b	ENSGT00550000075041	ENSGT00940000164784	ENSGT00990000211898	ENSGT00390000014148.f	ENSGT00940000158016.c.a.a	ENSGT00940000159868.b #18	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000183067.a.b.b.vb.a	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b.c	ENSGT01030000234539.b.b.a.i.n	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00950000182925.A.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000155553.e.b	ENSGT00530000065159
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00530000064123.j	ENSGT00940000156744.o.a.b	ENSGT00940000161616.c.r	ENSGT00940000155670	ENSGT00940000155178.ce	ENSGT00940000155434	ENSGT00390000014476	ENSGT00940000160428.b.a.b	ENSGT00550000075041	ENSGT00940000164784	ENSGT00990000211898	ENSGT00390000014148.f	ENSGT00940000158016.c.a.a	ENSGT00940000159868.b #18	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000183067.a.b.b.vb.a	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b.c	ENSGT01030000234539.b.b.a.i.n	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00950000182925.A.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000155553.e.b	ENSGT00530000065159
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000154416.C.c.a.a.b	ENSGT00530000064123.j	ENSGT00940000156744.o.a.b	ENSGT00940000161616.c.r	ENSGT00940000155670	ENSGT00940000155178.ce	ENSGT00940000155434	ENSGT00390000014476	ENSGT00940000160428.b.a.b	ENSGT00550000075041	ENSGT00940000164784	ENSGT00390000014148.f	ENSGT00940000158016.c.a.a	ENSGT00940000159868.b #18	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000183067.a.b.b.vb.a	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b.c	ENSGT01030000234539.b.b.a.i.n	ENSGT00940000177802	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00950000182925.A.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000155553.e.b	ENSGT00530000065159
Chinook salmon	MODERN SPECIES	28	ENSOTSG00005000486	ENSOTSG00005000510	rab14 (ENSOTSG00005000513)	ENSOTSG00005000518	ENSOTSG00005000520	cfap77 (ENSOTSG00005000525)	BARHL1 (ENSOTSG00005000527)	DDX31 (ENSOTSG00005000536)	ak8 (ENSOTSG00005000544)	spaca9 (ENSOTSG00005000551)	tsc1a (ENSOTSG00005000557)	grin1b (ENSOTSG00005000582)	kazald3 (ENSOTSG00005000586)	ENSOTSG00005000587 #18	rsph14 (ENSOTSG00005000588)	DMTN (ENSOTSG00005000596) #22	ENSOTSG00005001342	fhip2b (ENSOTSG00005001349) #23	nudt18 (ENSOTSG00005001363) #25	adam9 (ENSOTSG00005001369)	OGDH (ENSOTSG00005001565)	ZMIZ2 (ENSOTSG00005001853)	ENSOTSG00005002057	SLC18A1 (ENSOTSG00005002059) #14	ENSOTSG00005002065	mak16 (ENSOTSG00005002067)	ENSOTSG00005002072	MFSD14B (ENSOTSG00005002144)	ENSOTSG00005007905	pik3r1 (ENSOTSG00005007908)	zgc:101664 (ENSOTSG00005007917)
Coho salmon	MODERN SPECIES	22	ENSOKIG00005003913	cfap77 (ENSOKIG00005003916)	BARHL1 (ENSOKIG00005003920)	DDX31 (ENSOKIG00005003925)	ak8 (ENSOKIG00005003942)	ENSOKIG00005003990	tsc1a (ENSOKIG00005004031)	ENSOKIG00005004201	ENSOKIG00005004213	grin1b (ENSOKIG00005004383)	kazald3 (ENSOKIG00005004620)	ENSOKIG00005004632 #18	rsph14 (ENSOKIG00005004642)	ENSOKIG00005004653	ENSOKIG00005004662	DMTN (ENSOKIG00005004684) #22	ENSOKIG00005004708	ENSOKIG00005004722	ENSOKIG00005004756	fhip2b (ENSOKIG00005004778) #23	nudt18 (ENSOKIG00005004910) #25	adam9 (ENSOKIG00005005030)	ENSOKIG00005006503	ZMIZ2 (ENSOKIG00005007212)	SLC18A1 (ENSOKIG00005007412) #14	TTI2 (ENSOKIG00005007481)	mak16 (ENSOKIG00005007495)	ENSOKIG00005007535	MFSD14B (ENSOKIG00005007580)	ENSOKIG00005008397	PIK3R1 (ENSOKIG00005008470)
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000077865	ENSOMYG00000016699	ENSOMYG00000022393	ENSOMYG00000071969	cfap77 (ENSOMYG00000018201)	BARHL1 (ENSOMYG00000018211)	DDX31 (ENSOMYG00000018227)	ak8 (ENSOMYG00000018269)	ENSOMYG00000018398	tsc1a (ENSOMYG00000018376)	ENSOMYG00000064667	grin1b (ENSOMYG00000018442)	ENSOMYG00000018600	ENSOMYG00000018608 #18	ENSOMYG00000018626	DMTN (ENSOMYG00000018648) #22	ENSOMYG00000018672	ENSOMYG00000049342	ENSOMYG00000071267	fhip2b (ENSOMYG00000018772) #23	nudt18 (ENSOMYG00000019714) #25	ENSOMYG00000065798	adam9 (ENSOMYG00000019766)	ENSOMYG00000049070	ENSOMYG00000019977	ENSOMYG00000021558	ENSOMYG00000021885 #14	ENSOMYG00000021976	ENSOMYG00000050013	ENSOMYG00000021999	ENSOMYG00000022029
Salmo	ANCESTRAL SPECIES	30	ENSGT00530000064123.j	ENSGT00940000156744.o.b	ENSGT00940000161616.c.r	ENSGT00940000155670	ENSGT00940000155178.ce	ENSGT00940000155434	ENSGT00390000014476	ENSGT00940000160428.b.a.b	ENSGT00550000075041	ENSGT00940000164784	ENSGT00990000211898	ENSGT00390000014148.f	ENSGT00940000158016.c.a.a	ENSGT00940000159868.b #18	ENSGT00500000044989	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000183067.a.b.b.vb.a	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239	ENSGT00950000183125.b.a.a.a.a.b.c	ENSGT01030000234539.b.b.a.i.n	ENSGT00940000159352 #14	ENSGT00390000003878	ENSGT00390000012859	ENSGT00950000182925.A.a	ENSGT00940000156081.i	ENSGT00940000154960	ENSGT00940000155553.e.b	ENSGT00530000065159	ENSGT00550000074618.b
River trout	MODERN SPECIES	21	ENSSTUG00000038683	C5 (ENSSTUG00000038463)	rab14 (ENSSTUG00000038413)	ENSSTUG00000038397	ENSSTUG00000038390	cfap77 (ENSSTUG00000038378)	BARHL1 (ENSSTUG00000038337)	DDX31 (ENSSTUG00000038192)	ak8 (ENSSTUG00000038077)	tsc1a (ENSSTUG00000037885)	grin1b (ENSSTUG00000037756)	kazald3 (ENSSTUG00000037733)	ENSSTUG00000037728 #18	rsph14 (ENSSTUG00000037708)	ENSSTUG00000037704	DMTN (ENSSTUG00000037679) #22	ENSSTUG00000037673	ENSSTUG00000037664	fhip2b (ENSSTUG00000037549) #23	nudt18 (ENSSTUG00000037538) #25	adam9 (ENSSTUG00000035622)	OGDH (ENSSTUG00000033699)	ZMIZ2 (ENSSTUG00000032989)	ENSSTUG00000032967	SLC18A1 (ENSSTUG00000032939) #14	TTI2 (ENSSTUG00000032934)	mak16 (ENSSTUG00000032823)	ENSSTUG00000032781	MFSD14B (ENSSTUG00000032434)	ENSSTUG00000032322	zgc:101664 (ENSSTUG00000032308)
Atlantic salmon	MODERN SPECIES	18	ENSSSAG00000042569	ENSSSAG00000042668	ENSSSAG00000117330	ENSSSAG00000044457	cssa26h9orf171 (ENSSSAG00000044475)	BARHL1 (ENSSSAG00000097874)	DDX31 (ENSSSAG00000008791)	ak8 (ENSSSAG00000008921)	ENSSSAG00000009492	tsc1 (ENSSSAG00000009422)	grin1b (ENSSSAG00000009741)	ENSSSAG00000107524	dok2 (ENSSSAG00000043339) #18	ENSSSAG00000043348	ENSSSAG00000100833	DMTN (ENSSSAG00000099637) #22	ENSSSAG00000107286	ENSSSAG00000043428	fhip2b (ENSSSAG00000043466) #23	nudt18 (ENSSSAG00000043511) #25	adam9 (ENSSSAG00000043560)	ENSSSAG00000045777	zmiz2 (ENSSSAG00000046445)	ENSSSAG00000049976 #14	ENSSSAG00000088544	tti2 (ENSSSAG00000050113)	ENSSSAG00000050139	spinb (ENSSSAG00000050158)	ENSSSAG00000050340	lrrc2 (ENSSSAG00000054744)	ENSSSAG00000054808
Northern pike	MODERN SPECIES	12	rab14 (ENSELUG00000009832)	ENSELUG00000009796	gsnb (ENSELUG00000028993)	ENSELUG00000009698	cfap77 (ENSELUG00000029762)	BARHL1 (ENSELUG00000009660)	DDX31 (ENSELUG00000001052)	ak8 (ENSELUG00000009619)	tsc1a (ENSELUG00000001247)	CEL (ENSELUG00000009444)	ENSELUG00000016583	grin1b (ENSELUG00000009298)	kazald3 (ENSELUG00000009154)	ENSELUG00000009119 #18	rsph14 (ENSELUG00000009101)	DMTN (ENSELUG00000009063) #22	ENSELUG00000008944	fhip2b (ENSELUG00000008927) #23	nudt18 (ENSELUG00000008900) #25	adam9 (ENSELUG00000000337)	OGDH (ENSELUG00000008746)	ZMIZ2 (ENSELUG00000008651)	ENSELUG00000008409	ppia (ENSELUG00000008535)	SLC18A1 (ENSELUG00000008386) #14	ENSELUG00000008330	mak16 (ENSELUG00000008291)	spinb (ENSELUG00000008104)	ENSELUG00000008053	ENSELUG00000007986	srp19 (ENSELUG00000032438)
Osteoglossiformes	ANCESTRAL SPECIES	73	ENSGT00940000160296.i #28	ENSGT00940000155860.a	ENSGT00940000160547	ENSGT00940000154314.b	ENSGT00940000155782.e	ENSGT00940000164226.a.a	ENSGT00940000163584.b.b	ENSGT00940000156732.a.b.f	ENSGT00940000160915	ENSGT00940000157038.b	ENSGT00530000064712	ENSGT00940000153710.a	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000167390	ENSGT00950000182850.a.b.b.b.a #22	ENSGT00950000182936.a.b.b #23	ENSGT00390000002931 #25	ENSGT00940000156239.e	ENSGT00550000074823.b.b	ENSGT01010000222287.B.a.a.a.b	ENSGT00950000183200.B #33	ENSGT00940000157986 #34	ENSGT00940000154115.d ##35	ENSGT00940000166302	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888.b	ENSGT00940000159875	ENSGT00940000164790.a	ENSGT00940000156902.b
Asian bonytongue	MODERN SPECIES	3	ankrd39 (ENSSFOG00015024327)	kctd9a (ENSSFOG00015012305)	actr1b (ENSSFOG00015012328)	arid5a (ENSSFOG00015012374)	dbnlb (ENSSFOG00015012403)	ube2d4 (ENSSFOG00015012439)	TCF7L1 (ENSSFOG00015012463)	ENSSFOG00015012518	stambpa (ENSSFOG00015012531)	atp6v1b2 (ENSSFOG00015012573) #15	LZTS1 (ENSSFOG00015012625) #16	GFRA2 (ENSSFOG00015025997) #17	DOK2 (ENSSFOG00015012656) #18	kazald3 (ENSSFOG00015012677)	fgf17 (ENSSFOG00015028120)	DMTN (ENSSFOG00015012714) #22	ENSSFOG00015012789	fhip2b (ENSSFOG00015012804) #23	nudt18 (ENSSFOG00015024866) #25	adam9 (ENSSFOG00015012841)	atad1a (ENSSFOG00015012892)	ENSSFOG00015012922	piwil2 (ENSSFOG00015012930) #33	slc39a14 (ENSSFOG00015031910) #34	ENSSFOG00015013095	ppp3cca (ENSSFOG00015025342)	adam28 (ENSSFOG00015013111)	tcima (ENSSFOG00015013141)	ZMAT4 (ENSSFOG00015013158)	sfrp1a (ENSSFOG00015013195)	GOLGA7 (ENSSFOG00015027248)
P. kingsleyae	MODERN SPECIES	33	npy8br (ENSPKIG00000024821)	arid5a (ENSPKIG00000024825)	dbnlb (ENSPKIG00000024839)	ube2d4 (ENSPKIG00000024864)	TCF7L1 (ENSPKIG00000024880)	ENSPKIG00000024894	stambpa (ENSPKIG00000024897)	atp6v1b2 (ENSPKIG00000024905) #15	LZTS1 (ENSPKIG00000024916) #16	ENSPKIG00000024925	GFRA2 (ENSPKIG00000024932) #17	DOK2 (ENSPKIG00000024935) #18	kazald3 (ENSPKIG00000024942)	fgf17 (ENSPKIG00000024947)	ENSPKIG00000024950	DMTN (ENSPKIG00000024958) #22	ENSPKIG00000024964	fhip2b (ENSPKIG00000024972) #23	nudt18 (ENSPKIG00000024982) #25	adam9 (ENSPKIG00000024992)	atad1a (ENSPKIG00000025007)	piwil2 (ENSPKIG00000025025) #33	ENSPKIG00000025055	slc39a14 (ENSPKIG00000025065) #34	ppp3ccb (ENSPKIG00000025620) ##35	adam28 (ENSPKIG00000000009)	tcima (ENSPKIG00000000036)	ENSPKIG00000000048	sfrp1a (ENSPKIG00000000058)	GOLGA7 (ENSPKIG00000000067)	ENSPKIG00000000078
Osteoglossocephalai	ANCESTRAL SPECIES	64	ENSGT00390000011010.a.a	ENSGT00940000163584.b.b	ENSGT00940000156732.a.b	ENSGT00940000160915	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000153710.a	ENSGT00940000155068.b #15	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000003458	ENSGT00940000156888	ENSGT00940000159875	ENSGT00390000000134.b.a	ENSGT00390000000134.b.b	ENSGT00940000179863	ENSGT00940000155874.b	ENSGT00390000010398.B	ENSGT00940000156991.a.b	ENSGT00940000156808	ENSGT00530000063711.a	ENSGT00940000155874.a	ENSGT00940000157037.b.a	ENSGT00940000160760.a.b
Clupeocephala	ANCESTRAL SPECIES	80	ENSGT00940000156732.a.b	ENSGT00940000160915	ENSGT00940000157038.a.a	ENSGT00530000064712	ENSGT00940000153710.a	ENSGT00940000155068.b #15	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000154078.a.b #16	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22
Otomorpha	ANCESTRAL SPECIES	63	ENSGT00940000154314.a	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.s	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000153710.a.e	ENSGT00940000155068.b #15	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000164419	ENSGT00940000155431.a	ENSGT00950000183012.A.a.c.b	ENSGT00940000166302	ENSGT00940000156716	ENSGT00940000156888.c.b	ENSGT00940000156888.c.a	ENSGT00940000159875	ENSGT00390000000134.b.b	ENSGT00940000179863	ENSGT00530000063711.a	ENSGT00940000155874.b	ENSGT00390000010398.B	ENSGT00940000156991.a.a
Otophysi	ANCESTRAL SPECIES	86														ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000164419	ENSGT00940000155431.a	ENSGT00950000183012.A.a.c.b	ENSGT00940000166302	ENSGT00940000156716	ENSGT00940000156888.c.a	ENSGT00940000159875	ENSGT00390000000134.b.b	ENSGT00530000063711.a	ENSGT00940000155874.b	ENSGT00390000010398.B	ENSGT00940000156991.a.a	ENSGT00940000156991.b	ENSGT00940000156808
Characiphysae	ANCESTRAL SPECIES	141														ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888.d	ENSGT00940000156888.c.a	ENSGT00940000159875	ENSGT00940000155874.a	ENSGT00950000183089.c.b	ENSGT01060000248528.b.l	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00390000013867.bc.a.a	ENSGT00940000160760.b	ENSGT00730000111181
Channel catfish	MODERN SPECIES	7	isl1b (ENSIPUG00000024427)	GOLPH3 (ENSIPUG00000024434)	GFRA2 (ENSIPUG00000024438) #17	ENSIPUG00000024441	ENSIPUG00000024442	ENSIPUG00000024444	ENSIPUG00000024471 #18	xpo7 (ENSIPUG00000024474) #19	ENSIPUG00000024478	ENSIPUG00000024480	ENSIPUG00000024483	ENSIPUG00000024485	ENSIPUG00000024486	ENSIPUG00000024488	pbdc1 (ENSIPUG00000024491)	dmtn (ENSIPUG00000024493) #22	ppp3ccb (ENSIPUG00000024497) ##35	Sfrp1 (ENSIPUG00000024500)	golga7 (ENSIPUG00000024501)	ENSIPUG00000024504	loxl2 (ENSIPUG00000024508)	ENSIPUG00000024539	ENSIPUG00000024540	ENSIPUG00000024544	ENSIPUG00000024552	ENSIPUG00000024559	ANTXR1 (ENSIPUG00000024566)	AAK1 (ENSIPUG00000024580)	anxa4 (ENSIPUG00000024590)	trim69 (ENSIPUG00000024601)	pcna (ENSIPUG00000024603)
Characiphysae_b	ANCESTRAL SPECIES	138														ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888.d	ENSGT00940000159875	ENSGT00940000155874.a	ENSGT00950000183089.c.b	ENSGT01100000263506.a.d	ENSGT01060000248528.b.l	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00390000013867.bc.a.a	ENSGT00940000160760.b	ENSGT00730000111181
Characoidei	ANCESTRAL SPECIES	152														ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888.d	ENSGT00940000159875	ENSGT00940000155874.a	ENSGT00950000183089.c.b	ENSGT01060000248528.b.l	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00390000013867.bc.a.a.b	ENSGT00940000160760.b	ENSGT00730000111181	ENSGT00940000158066.o
Red-bellied piranha	MODERN SPECIES	359													ENSPNAG00000006692 #18	xpo7 (ENSPNAG00000023515) #19	pbdc1 (ENSPNAG00000023528)	dmtn (ENSPNAG00000023556) #22	ppp3ccb (ENSPNAG00000023648) ##35	ENSPNAG00000003777	ENSPNAG00000023708	tcimb (ENSPNAG00000023733)	ENSPNAG00000023764	ENSPNAG00000023775	sfrp1b (ENSPNAG00000003787)	golga7 (ENSPNAG00000023845)	ENSPNAG00000023875	loxl2a (ENSPNAG00000023929)	ENSPNAG00000023952	TACC1 (ENSPNAG00000023999)	DDHD2 (ENSPNAG00000024027)	plpp5 (ENSPNAG00000024042)
Mexicana tetra	MODERN SPECIES	12	hvcn1 (ENSAMXG00000018716)	mtrex (ENSAMXG00000018751)	DHX29 (ENSAMXG00000018788)	ENSAMXG00000018829	ENSAMXG00000038560	GOLPH3 (ENSAMXG00000030266)	isl1b (ENSAMXG00000018850)	ITGA1 (ENSAMXG00000018875)	ENSAMXG00000044112	GFRA2 (ENSAMXG00000042666) #17	ENSAMXG00000034708	ENSAMXG00000033329	ENSAMXG00000032618 #18	xpo7 (ENSAMXG00000020462) #19	pbdc1 (ENSAMXG00000020466)	dmtn (ENSAMXG00000020473) #22	tcimb (ENSAMXG00000025285)	ENSAMXG00000020478	ppp3ccb (ENSAMXG00000020487) ##35	ENSAMXG00000034377	sfrp1b (ENSAMXG00000020492)	golga7 (ENSAMXG00000020496)	ENSAMXG00000030303	ENSAMXG00000033844	ENSAMXG00000031072	loxl2a (ENSAMXG00000020519)	ENSAMXG00000031518	ENSAMXG00000040798	ENSAMXG00000039348	DDHD2 (ENSAMXG00000020540)	NSD3 (ENSAMXG00000020550)
Electric eel	MODERN SPECIES	54	triqk (ENSEEEG00000008872)	cibar1 (ENSEEEG00000008871)	TRIB1 (ENSEEEG00000008870)	lratd2a (ENSEEEG00000008869)	fam91a1 (ENSEEEG00000008865)	klhl38a (ENSEEEG00000008864)	anp32a (ENSEEEG00000008862)	CORO2B (ENSEEEG00000008840)	glceb (ENSEEEG00000008839)	paqr5b (ENSEEEG00000008824)	TLE3 (ENSEEEG00000008577)	GFRA2 (ENSEEEG00000008553) #17	ENSEEEG00000008551 #18	xpo7 (ENSEEEG00000008408) #19	pbdc1 (ENSEEEG00000008400)	dmtn (ENSEEEG00000008346) #22	ppp3ccb (ENSEEEG00000008302) ##35	ENSEEEG00000008284	sfrp1b (ENSEEEG00000008282)	golga7 (ENSEEEG00000008278)
Cyprinoidei	ANCESTRAL SPECIES	48	ENSGT00950000182864.a.b.b.a.a.a.b	ENSGT00390000013415.a.b.jb	ENSGT01030000234527.A.a.b.a.a.c.a	ENSGT00940000166031	ENSGT00390000008694.b.a	ENSGT00940000165064.b	ENSGT00940000154909.b.a	ENSGT00940000166792	ENSGT00940000165076.b	ENSGT00940000155068.b #15	ENSGT00630000090221	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000166302	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888.c.b	ENSGT00940000156888.c.a	ENSGT00940000159875	ENSGT00940000155874.a	ENSGT00950000183089.c.b	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000160760.b	ENSGT00730000111181	ENSGT00940000158066.o
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	233	ENSGT00390000013415.a.b.jb.b	ENSGT01030000234527.A.a.b.a.a.c.a.d	ENSGT00940000166031.b	ENSGT00390000008694.b.a.a.a	ENSGT00940000165064.b.b	ENSGT00940000154909.b.a.d	ENSGT00940000166792.a.b	ENSGT00940000165076.b.e	ENSGT00940000155068.b.kb #15	ENSGT00630000090221.a.a	ENSGT00630000090221.a.b	ENSGT00940000156168.B.fb.a #17	ENSGT00940000159868.b.v.a #18	ENSGT00940000153139.B.a.a #19	ENSGT00390000016333.a	ENSGT00950000182850.a.b.b.b.b.a #22	ENSGT01010000222287.B.a.a.a.b.f.a	ENSGT00940000154115.d.b ##35	ENSGT00390000003458.n.a	ENSGT00940000156888.c.b.a.b	ENSGT00940000159875.f.b	ENSGT00390000000134.b.b.e	ENSGT00530000063711.a	ENSGT00940000155874.b.a	ENSGT00390000010398.B.b	ENSGT00940000156991.a.a.c	ENSGT00940000156808.u.b	ENSGT00940000159772.i	ENSGT00940000155355.ib.b	ENSGT00950000183167.a.b.b.a.d	ENSGT00940000156818.mb.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	28	bnip3lb (ENSCARG00000016030)	dpysl2b (ENSCARG00000015461)	ENSCARG00000015414	tmem230a (ENSCARG00000015406)	ENSCARG00000015349	LRRTM4 (ENSCARG00000015332)	ENSCARG00000015296	ENSCARG00000015273	atp6v1b2 (ENSCARG00000014917) #15	ENSCARG00000014864	ENSCARG00000014828	GFRA2 (ENSCARG00000014815) #17	ENSCARG00000014804 #18	xpo7 (ENSCARG00000014751) #19	pbdc1 (ENSCARG00000014717)	dmtn (ENSCARG00000014691) #22	ENSCARG00000014684	ppp3ccb (ENSCARG00000012508) ##35	tcimb (ENSCARG00000012356)	ZMAT4 (ENSCARG00000012332)	sfrp1b (ENSCARG00000012324)	golga7 (ENSCARG00000012304)	ENSCARG00000012268	loxl2a (ENSCARG00000011640)	ENSCARG00000011592	TACC1 (ENSCARG00000011577)	plpp5 (ENSCARG00000011412)	NSD3 (ENSCARG00000010078)	LETM2 (ENSCARG00000009987)	ENSCARG00000009976	prnpb (ENSCARG00000009971)
Goldfish	MODERN SPECIES	1	timm10b (ENSCARG00000017364)	ilk (ENSCARG00000017272)	smpd1 (ENSCARG00000017256)	tpte (ENSCARG00000017086)	fgl1b (ENSCARG00000017043)	ENSCARG00000017036	vps36 (ENSCARG00000016137)	ENSCARG00000016053	stoml3b (ENSCARG00000015912)	ENSCARG00000015904	ENSCARG00000015895	ENSCARG00000015889	ENSCARG00000015885 #18	xpo7 (ENSCARG00000015537) #19	pbdc1 (ENSCARG00000015500)	dmtn (ENSCARG00000015496) #22	ENSCARG00000015492	ppp3ccb (ENSCARG00000015283) ##35	tcimb (ENSCARG00000015259)	ZMAT4 (ENSCARG00000015255)	sfrp1b (ENSCARG00000015247)	golga7 (ENSCARG00000015238)	loxl2a (ENSCARG00000014938)	ENSCARG00000014922	ENSCARG00000014852	plpp5 (ENSCARG00000014834)	NSD3 (ENSCARG00000014720)	LETM2 (ENSCARG00000014686)	ENSCARG00000014670	ENSCARG00000014666	rassf2b (ENSCARG00000014656)
Cyprininae_a	ANCESTRAL SPECIES	51	ENSGT00390000013415.a.b.jb.b	ENSGT01030000234527.A.a.b.a.a.c.a.d	ENSGT00940000166031.b	ENSGT00390000008694.b.a.a.a	ENSGT00940000165064.b.b	ENSGT00940000154909.b.a.d	ENSGT00940000166792.a.b	ENSGT00940000165076.b.e	ENSGT00940000155068.b.kb #15	ENSGT00630000090221.a.a	ENSGT00630000090221.a.b	ENSGT00940000156168.B.fb.a #17	ENSGT00940000159868.b.v.a #18	ENSGT00940000153139.B.a.a #19	ENSGT00390000016333.a	ENSGT00950000182850.a.b.b.b.b.a #22	ENSGT01010000222287.B.a.a.a.b.f.a	ENSGT00940000154115.d.b ##35	ENSGT00390000003458.n.a	ENSGT00940000156888.c.b.a.b	ENSGT00940000159875.f.b	ENSGT00390000000134.b.b.e	ENSGT00530000063711.a	ENSGT00940000155874.b.a	ENSGT00390000010398.B.a	ENSGT00940000156991.a.a.c	ENSGT00940000156808.u.b	ENSGT00940000159772.i	ENSGT00940000155355.ib.b	ENSGT00950000183167.a.b.b.a.d	ENSGT00940000156818.mb.a
Golden-line barbel	MODERN SPECIES	77														ENSSGRG00000042631 #18	xpo7 (ENSSGRG00000042667) #19	dmtn (ENSSGRG00000044320) #22	ENSSGRG00000044324	ppp3ccb (ENSSGRG00000044443) ##35	tcimb (ENSSGRG00000047442)	ENSSGRG00000047444	sfrp1b (ENSSGRG00000047446)	golga7 (ENSSGRG00000047449)	ENSSGRG00000047457	loxl2a (ENSSGRG00000047459)	ENSSGRG00000047460	ENSSGRG00000047461	DDHD2 (ENSSGRG00000047469)	plpp5 (ENSSGRG00000047553)	ENSSGRG00000047554	LETM2 (ENSSGRG00000047556)	ENSSGRG00000047557
Common carp reference	MODERN SPECIES	32	bnip3lb (ENSCCRG00000068987)	dpysl2b (ENSCCRG00000008364)	ENSCCRG00000016264	tmem230a (ENSCCRG00000053370)	ENSCCRG00000016277	ENSCCRG00000009920	ENSCCRG00000075542	ENSCCRG00000032035	atp6v1b2 (ENSCCRG00000067732) #15	ENSCCRG00000067956	ENSCCRG00000080394	GFRA2 (ENSCCRG00000021091) #17	ENSCCRG00000073924 #18	xpo7 (ENSCCRG00000009771) #19	pbdc1 (ENSCCRG00000079947)	dmtn (ENSCCRG00000004778) #22	ENSCCRG00000081169	ppp3ccb (ENSCCRG00000014392) ##35	tcimb (ENSCCRG00000053997)	ZMAT4 (ENSCCRG00000061721)	sfrp1b (ENSCCRG00000062281)	golga7 (ENSCCRG00000064659)	ENSCCRG00000046071	loxl2a (ENSCCRG00000020039)	ENSCCRG00000070890	ENSCCRG00000045833	plpp5 (ENSCCRG00000045825)	ENSCCRG00000042742	LETM2 (ENSCCRG00000053301)	ENSCCRG00000042394	sprn2 (ENSCCRG00000063645)
Cyprininae	ANCESTRAL SPECIES	242	ENSGT00950000182864.a.b.b.a.a.a.b.b	ENSGT00390000013415.a.b.jb.a	ENSGT01030000234527.A.a.b.a.a.c.a.c	ENSGT00940000166031.a	ENSGT00390000008694.b.a.a.b	ENSGT00940000165064.b.a	ENSGT00940000154909.b.a.c	ENSGT00940000166792.b	ENSGT00940000165076.b.f	ENSGT00940000155068.b.jb #15	ENSGT00630000090221.b	ENSGT00940000156168.B.fb.b #17	ENSGT00940000159868.b.v.b #18	ENSGT00940000153139.B.a.b #19	ENSGT00390000016333.b	ENSGT00950000182850.a.b.b.b.b.b #22	ENSGT01010000222287.B.a.a.a.b.f.b	ENSGT00940000154115.d.a ##35	ENSGT00390000003458.n.b	ENSGT00940000156888.c.b.a.a	ENSGT00940000159875.f.a	ENSGT00390000000134.b.b.f	ENSGT00940000155874.b.b	ENSGT00940000156991.a.a.d	ENSGT00940000156808.u.a	ENSGT00940000159772.j	ENSGT00940000155355.ib.a	ENSGT00950000183167.a.b.b.a.c	ENSGT00940000156818.mb.b	ENSGT00390000016468.e	ENSGT00940000158546.`b.a
Goldfish	MODERN SPECIES	863																dmtn (ENSCARG00000030976) #22	ENSCARG00000031016	ppp3ccb (ENSCARG00000031043) ##35
Cyprininae_a	ANCESTRAL SPECIES	198	ENSGT00950000182864.a.b.b.a.a.a.b.b	ENSGT00390000013415.a.b.jb.a	ENSGT01030000234527.A.a.b.a.a.c.a.c	ENSGT00940000166031.a	ENSGT00390000008694.b.a.a.b	ENSGT00940000165064.b.a	ENSGT00940000154909.b.a.c	ENSGT00940000166792.b	ENSGT00940000165076.b.f	ENSGT00940000155068.b.jb #15	ENSGT00630000090221.b	ENSGT00940000156168.B.fb.b #17	ENSGT00940000159868.b.v.b #18	ENSGT00940000153139.B.a.b #19	ENSGT00390000016333.b	ENSGT00950000182850.a.b.b.b.b.b #22	ENSGT01010000222287.B.a.a.a.b.f.b	ENSGT00940000154115.d.a ##35	ENSGT00390000003458.n.b	ENSGT00940000156888.c.b.a.a	ENSGT00940000159875.f.a	ENSGT00390000000134.b.b.f	ENSGT00940000155874.b.b	ENSGT00940000156991.a.a.d	ENSGT00390000010398.B.b	ENSGT00940000156991.b	ENSGT00940000156808.u.a	ENSGT00940000159772.j	ENSGT00940000155355.ib.a	ENSGT00950000183167.a.b.b.a.c	ENSGT00940000156818.mb.b
Golden-line barbel	MODERN SPECIES	477							LRRTM4 (ENSSGRG00000051850)	ENSSGRG00000051849	ENSSGRG00000051847	ENSSGRG00000051844	ENSSGRG00000051843	GFRA2 (ENSSGRG00000051842) #17	ENSSGRG00000051841 #18	xpo7 (ENSSGRG00000051819) #19	pbdc1 (ENSSGRG00000051814)	dmtn (ENSSGRG00000051812) #22	ENSSGRG00000051798	ppp3ccb (ENSSGRG00000050111) ##35	tcimb (ENSSGRG00000050081)	ZMAT4 (ENSSGRG00000050070)	sfrp1b (ENSSGRG00000050068)	golga7 (ENSSGRG00000050065)	ENSSGRG00000050064	loxl2a (ENSSGRG00000050018)	ENSSGRG00000049993	ENSSGRG00000049992	DDHD2 (ENSSGRG00000049988)	plpp5 (ENSSGRG00000049987)	NSD3 (ENSSGRG00000049797)
Zebrafish	MODERN SPECIES	1	ENSDARG00000027638	tmem230a (ENSDARG00000027687)	ENSDARG00000075864	LRRTM4 (ENSDARG00000080015)	ENSDARG00000092976	vsig8a (ENSDARG00000054050)	atp6v1b2 (ENSDARG00000043465) #15	ENSDARG00000078394	ENSDARG00000079681	ENSDARG00000076949	ENSDARG00000111734	GFRA2 (ENSDARG00000044015) #17	ENSDARG00000116593 #18	xpo7 (ENSDARG00000005540) #19	pbdc1 (ENSDARG00000057299)	dmtn (ENSDARG00000013110) #22	ENSDARG00000027587	ppp3ccb (ENSDARG00000057456) ##35	tcimb (ENSDARG00000076858)	ZMAT4 (ENSDARG00000061419)	sfrp1b (ENSDARG00000057678)	golga7 (ENSDARG00000057676)	ENSDARG00000099593	loxl2a (ENSDARG00000044010)	ENSDARG00000100139	TACC1 (ENSDARG00000073753)	DDHD2 (ENSDARG00000076765)	plpp5 (ENSDARG00000057672)	NSD3 (ENSDARG00000062765)	LETM2 (ENSDARG00000077515)	ENSDARG00000088831
Clupeiformes	ANCESTRAL SPECIES	40	ENSGT00940000154314.a	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.s	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000153710.a.e	ENSGT00940000155068.b #15	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000166302	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888.c.a	ENSGT00940000155874.a	ENSGT00950000183089.c.b	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000160760.b	ENSGT00730000111181	ENSGT00940000158066.o	ENSGT00940000155596.q	ENSGT00940000159669.b
Atlantic herring	MODERN SPECIES	3	kctd9b (ENSCHAG00000026924)	actr1b (ENSCHAG00000026952)	marchf5l (ENSCHAG00000026958)	npy8ar (ENSCHAG00000026959)	cox5ba (ENSCHAG00000026961)	dbnla (ENSCHAG00000026964)	tcf7l1a (ENSCHAG00000026970)	ENSCHAG00000026989	dusp11 (ENSCHAG00000026994)	stambpa (ENSCHAG00000027000)	atp6v1b2 (ENSCHAG00000027018) #15	GFRA2 (ENSCHAG00000027049) #17	ENSCHAG00000027051 #18	xpo7 (ENSCHAG00000027068) #19	pbdc1 (ENSCHAG00000027105)	dmtn (ENSCHAG00000027108) #22	ENSCHAG00000027116	ENSCHAG00000027119	ppp3ccb (ENSCHAG00000027218) ##35	ENSCHAG00000027554	tcimb (ENSCHAG00000027558)	ENSCHAG00000027561	sfrp1b (ENSCHAG00000027565)	golga7 (ENSCHAG00000027571)	sdad1 (ENSCHAG00000027579)	SLC10A6 (ENSCHAG00000027595)	ENSCHAG00000027598	klhl8 (ENSCHAG00000027600)	ENSCHAG00000027603	ENSCHAG00000027609	ENSCHAG00000027611
Denticle herring	MODERN SPECIES	13	kctd9b (ENSDCDG00000035235)	actr1b (ENSDCDG00000035240)	marchf5l (ENSDCDG00000035246)	npy8ar (ENSDCDG00000035247)	cox5ba (ENSDCDG00000035248)	dbnla (ENSDCDG00000035249)	tcf7l1a (ENSDCDG00000035251)	ENSDCDG00000035272	dusp11 (ENSDCDG00000035278)	stambpa (ENSDCDG00000035283)	atp6v1b2 (ENSDCDG00000035289) #15	GFRA2 (ENSDCDG00000035298) #17	DOK2 (ENSDCDG00000035299) #18	xpo7 (ENSDCDG00000035325) #19	pbdc1 (ENSDCDG00000035393)	dmtn (ENSDCDG00000035396) #22	ENSDCDG00000035397	ppp3ccb (ENSDCDG00000035413) ##35	ENSDCDG00000035482	ENSDCDG00000035486	sfrp1b (ENSDCDG00000035490)	ENSDCDG00000035492	golga7 (ENSDCDG00000035497)	sdad1 (ENSDCDG00000035503)	ENSDCDG00000035508	SLC10A6 (ENSDCDG00000035509)	ENSDCDG00000035512	ENSDCDG00000035517	TCF4 (ENSDCDG00000035529)	txnl1 (ENSDCDG00000035540)	NARS1 (ENSDCDG00000035568)
Euteleosteomorpha	ANCESTRAL SPECIES	93	ENSGT00390000009948.d	ENSGT00940000161587	ENSGT00760000119772	ENSGT00940000154314.b	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35
Acanthomorphata	ANCESTRAL SPECIES	15	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b
Percomorphaceae	ANCESTRAL SPECIES	54	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b
Tiger tail seahorse	MODERN SPECIES	392	scarb1 (ENSHCOG00000020498)	SLC4A5 (ENSHCOG00000020573)	SEZ6L (ENSHCOG00000020604)	ENSHCOG00000020627	cryba4 (ENSHCOG00000020635)	cryba4 (ENSHCOG00000020648)	ENSHCOG00000020656	grk3 (ENSHCOG00000020698)	crybb1 (ENSHCOG00000020762)	COX5B (ENSHCOG00000020769)	prpf38a (ENSHCOG00000020781)	ENSHCOG00000020789	ENSHCOG00000020794	xpo7 (ENSHCOG00000020864) #19	pbdc1 (ENSHCOG00000000566)	dmtn (ENSHCOG00000020899) #22	cfap53 (ENSHCOG00000020916)	ENSHCOG00000020946	myo5b (ENSHCOG00000020983)	capslb (ENSHCOG00000004356)	lmbrd2b (ENSHCOG00000004363)	slc25a46 (ENSHCOG00000004375)	slc31a1 (ENSHCOG00000004387)	atp6v1g1 (ENSHCOG00000004402)	fktn (ENSHCOG00000004412)	ENSHCOG00000004453	ENSHCOG00000004499	ugcg (ENSHCOG00000004543)	BMP6 (ENSHCOG00000004564)	zgc:101569 (ENSHCOG00000004571)	pdcd6 (ENSHCOG00000004594)
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT01030000234908
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT01030000234908
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT01030000234908
Pomacentridae	ANCESTRAL SPECIES	84	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00940000159623	ENSGT00940000157979	ENSGT00530000063749.c.b	ENSGT00390000014471
Pomacentridae_A	ANCESTRAL SPECIES	81	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.i	ENSGT00390000011010.a.a.j	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350.j	ENSGT00940000157350.i	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00940000159623	ENSGT00940000157979	ENSGT00530000063749.c.b
Amphiprion	DUPLICATION
Amphiprion	ANCESTRAL SPECIES	264							ENSGT00390000011010.a.a.i	ENSGT00940000156732.a.a.g.b	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333.c	ENSGT00950000182850.a.b.b.b.b.c #22	ENSGT00940000154115.d ##35
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	3115																dmtn (ENSAOCG00000014122) #22
Clown anemonefish	MODERN SPECIES	2262																dmtn (ENSAOCG00000018523) #22
Orange clownfish	MODERN SPECIES	7	COX5B (ENSAPEG00000022267)	ENSAPEG00000022282	tcf7l1a (ENSAPEG00000022302)	ENSAPEG00000022394	dusp11 (ENSAPEG00000022407)	ATP6V1B2 (ENSAPEG00000022415) ##15	COX5B (ENSAPEG00000022441)	ENSAPEG00000022460	tcf7l1a (ENSAPEG00000022498)	ENSAPEG00000022526	dusp11 (ENSAPEG00000022535)	ENSAPEG00000022556 ##15	GFRA2 (ENSAPEG00000022593) #17	xpo7 (ENSAPEG00000022620) #19	pbdc1 (ENSAPEG00000022681)	dmtn (ENSAPEG00000022699) #22	ppp3ccb (ENSAPEG00000022727) ##35	dmtn (ENSAPEG00000022751) #22	ENSAPEG00000022758	nkx6.1 (ENSAPEG00000022770)	ENSAPEG00000022783	ENSAPEG00000022795	gpat3 (ENSAPEG00000022834)	abraxas1 (ENSAPEG00000022912)	ENSAPEG00000022927	mrps18c (ENSAPEG00000022956)	HELQ (ENSAPEG00000022964)	hpse (ENSAPEG00000023005)	gpat3 (ENSAPEG00000023036)	abraxas1 (ENSAPEG00000023045)	ENSAPEG00000023053
Amphiprion	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b.b.b.d #22
Orange clownfish	MODERN SPECIES	7	tcf7l1a (ENSAPEG00000022302)	ENSAPEG00000022394	dusp11 (ENSAPEG00000022407)	ATP6V1B2 (ENSAPEG00000022415) ##15	COX5B (ENSAPEG00000022441)	ENSAPEG00000022460	tcf7l1a (ENSAPEG00000022498)	ENSAPEG00000022526	dusp11 (ENSAPEG00000022535)	ENSAPEG00000022556 ##15	GFRA2 (ENSAPEG00000022593) #17	xpo7 (ENSAPEG00000022620) #19	pbdc1 (ENSAPEG00000022681)	dmtn (ENSAPEG00000022699) #22	ppp3ccb (ENSAPEG00000022727) ##35	dmtn (ENSAPEG00000022751) #22	ENSAPEG00000022758	nkx6.1 (ENSAPEG00000022770)	ENSAPEG00000022783	ENSAPEG00000022795	gpat3 (ENSAPEG00000022834)	abraxas1 (ENSAPEG00000022912)	ENSAPEG00000022927	mrps18c (ENSAPEG00000022956)	HELQ (ENSAPEG00000022964)	hpse (ENSAPEG00000023005)	gpat3 (ENSAPEG00000023036)	abraxas1 (ENSAPEG00000023045)	ENSAPEG00000023053	mrps18c (ENSAPEG00000023068)	HELQ (ENSAPEG00000023153)
Spiny chromis	MODERN SPECIES	2824															pbdc1 (ENSAPOG00000008058)	dmtn (ENSAPOG00000008027) #22
Bicolor damselfish	MODERN SPECIES	2764																dmtn (ENSSPAG00000020668) #22
Cichlidae	ANCESTRAL SPECIES	75													ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.a.k.a.a.b.b.a	ENSGT00500000044904.a.b.e.a.k.b.b.a.a.a.b	ENSGT00950000183234	ENSGT00940000155402.a.b
Midas cichlid	MODERN SPECIES	573															pbdc1 (ENSACIG00000020377)	dmtn (ENSACIG00000020357) #22	ppp3ccb (ENSACIG00000020334) ##35	hpse (ENSACIG00000020277)	mrps18c (ENSACIG00000020253)	HELQ (ENSACIG00000020216)	abraxas1 (ENSACIG00000020189)	gpat3 (ENSACIG00000020168)	nkx6.1 (ENSACIG00000020153)	rpl17 (ENSACIG00000020062)	MFHAS1 (ENSACIG00000020042)	ENSACIG00000020036	ENSACIG00000020015
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.e	ENSGT00390000011010.a.a.f	ENSGT00940000156732.a.a	ENSGT00940000155847.c	ENSGT00940000164699.q	ENSGT00940000164699.r	ENSGT00940000157038.a.b.v	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.a.k.a.a.a.b	ENSGT00500000044904.a.b.e.a.k.b.b.a.a.a.b	ENSGT00950000183234	ENSGT00940000155402.a.b
Nile tilapia	MODERN SPECIES	19	actr1b (ENSONIG00000012600)	npy8ar (ENSONIG00000012598)	COX5B (ENSONIG00000012596)	COX5B (ENSONIG00000012594)	dbnla (ENSONIG00000012589)	dusp11 (ENSONIG00000032244)	ENSONIG00000012587	ENSONIG00000012584	TCF7L1 (ENSONIG00000012578)	ATP6V1B2 (ENSONIG00000012574) ##15	GFRA2 (ENSONIG00000012573) #17	ENSONIG00000003620	ENSONIG00000019086	xpo7 (ENSONIG00000012566) #19	pbdc1 (ENSONIG00000012558)	dmtn (ENSONIG00000012554) #22	ppp3ccb (ENSONIG00000012541) ##35	hpse (ENSONIG00000012533)	mrps18c (ENSONIG00000012527)	HELQ (ENSONIG00000012532)	gpat3 (ENSONIG00000012514)	nkx6-1 (ENSONIG00000040109)	rpl17 (ENSONIG00000012509)	MFHAS1 (ENSONIG00000012507)	ENSONIG00000036777	ENSONIG00000030099	ENSONIG00000027867	ENSONIG00000035780	ENSONIG00000038656	ENSONIG00000012500	ENSONIG00000041068
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.e	ENSGT00390000011010.a.a.f	ENSGT00940000156732.a.a	ENSGT00940000155847.c	ENSGT00940000164699.q.b	ENSGT00940000164699.r	ENSGT00940000157038.a.b.v	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.a.k.a.a.a.b	ENSGT00500000044904.a.b.e.a.k.b.b.a.a.a.b	ENSGT00950000183234	ENSGT00940000155402.a.b
Lyretail cichlid	MODERN SPECIES	293	marchf5l (ENSNBRG00000006843)	actr1b (ENSNBRG00000006777)	npy8ar (ENSNBRG00000006748)	ENSNBRG00000006713	COX5B (ENSNBRG00000006699)	ENSNBRG00000006679	ENSNBRG00000006667	ENSNBRG00000006647	TCF7L1 (ENSNBRG00000006638)	ATP6V1B2 (ENSNBRG00000006606) ##15	ENSNBRG00000006571	GFRA2 (ENSNBRG00000006485) #17	ENSNBRG00000006452	xpo7 (ENSNBRG00000006360) #19	pbdc1 (ENSNBRG00000006350)	dmtn (ENSNBRG00000006310) #22	ppp3ccb (ENSNBRG00000006251) ##35	hpse (ENSNBRG00000006197)	mrps18c (ENSNBRG00000006182)	abraxas1 (ENSNBRG00000006147)	gpat3 (ENSNBRG00000006106)	nkx6.1 (ENSNBRG00000006083)	rpl17 (ENSNBRG00000006026)	MFHAS1 (ENSNBRG00000006014)	ENSNBRG00000006002	ENSNBRG00000005974	ENSNBRG00000005956	ENSNBRG00000005930	ENSNBRG00000005917	ppp1r3b (ENSNBRG00000005909)	lmbrd2b (ENSNBRG00000005856)
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.e	ENSGT00390000011010.a.a.f	ENSGT00940000156732.a.a	ENSGT00940000155847.c	ENSGT00940000164699.q.b	ENSGT00940000164699.r	ENSGT00940000157038.a.b.v	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b	ENSGT00940000163299.B.b.b.h.c.b.t.b.a	ENSGT00940000155987.b	ENSGT00940000163299.B.b.b.h.c.b.s.a.b	ENSGT00500000044904.a.b.e.a.k.a.a.a.a.a	ENSGT00940000159475.c
Burton s mouthbrooder	MODERN SPECIES	706														xpo7 (ENSHBUG00000001912) #19	pbdc1 (ENSHBUG00000001927)	dmtn (ENSHBUG00000001936) #22	ppp3ccb (ENSHBUG00000001946) ##35	hpse (ENSHBUG00000001958)	HELQ (ENSHBUG00000001997)	mrps18c (ENSHBUG00000002008)	abraxas1 (ENSHBUG00000002018)	gpat3 (ENSHBUG00000002032)	nkx6.1 (ENSHBUG00000002037)	ENSHBUG00000002042	rpl17 (ENSHBUG00000002066)	MFHAS1 (ENSHBUG00000002081)	ENSHBUG00000002092	ENSHBUG00000002104
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.e	ENSGT00390000011010.a.a.f	ENSGT00940000156732.a.a	ENSGT00940000155847.c	ENSGT00940000164699.q.b	ENSGT00940000164699.r	ENSGT00940000157038.a.b.v	ENSGT00940000155068.a.a ##15	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.a	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.b	ENSGT00940000163299.B.b.b.h.c.b.t.b.a	ENSGT00940000155987.b	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.a.k.a.a.a.b
P. nyererei	MODERN SPECIES	516																dmtn (ENSPNYG00000010425) #22	ppp3ccb (ENSPNYG00000010466) ##35	hpse (ENSPNYG00000010531)	HELQ (ENSPNYG00000010575)	mrps18c (ENSPNYG00000010654)	abraxas1 (ENSPNYG00000010639)	gpat3 (ENSPNYG00000010667)	nkx6.1 (ENSPNYG00000010705)	rpl17 (ENSPNYG00000010723)	MFHAS1 (ENSPNYG00000010802)	ENSPNYG00000010827	ENSPNYG00000010872	ppp1r3b (ENSPNYG00000010876)	lmbrd2b (ENSPNYG00000010898)	ENSPNYG00000010929	ENSPNYG00000010958
Haplochromini_B	ANCESTRAL SPECIES	4										ENSGT00940000157038.a.b.v	ENSGT00940000155068.a.a ##15	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.a	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.b	ENSGT00940000163299.B.b.b.h.c.b.t.b.a	ENSGT00940000155987.b.h.a	ENSGT01000000214408.a.b.a.a.a.c.a.b.e.a.a.b	ENSGT00940000163299.B.b.b.h.c.b.t.a	ENSGT00940000163299.B.b.b.h.c.b.s.a.b
Zebra mbuna	MODERN SPECIES	1110	rnf224 (ENSMZEG00005023193)	ENSMZEG00005023195	FER (ENSMZEG00005023198)	cdc26 (ENSMZEG00005023203)	prpf4 (ENSMZEG00005023205)	gal (ENSMZEG00005023208)	ENSMZEG00005023209	CADPS2 (ENSMZEG00005023215)	fezf1 (ENSMZEG00005023230)	kcne4 (ENSMZEG00005023231)	ATP6V1B2 (ENSMZEG00005023232) ##15	ENSMZEG00005023235	GFRA2 (ENSMZEG00005023241) #17	xpo7 (ENSMZEG00005023246) #19	pbdc1 (ENSMZEG00005023249)	dmtn (ENSMZEG00005023252) #22	ppp3ccb (ENSMZEG00005023257) ##35	hpse (ENSMZEG00005023262)	HELQ (ENSMZEG00005023270)	mrps18c (ENSMZEG00005023278)	gpat3 (ENSMZEG00005023281)	nkx6.1 (ENSMZEG00005023285)	rpl17 (ENSMZEG00005023287)	MFHAS1 (ENSMZEG00005023295)	ENSMZEG00005023296	ENSMZEG00005023298	ENSMZEG00005023303	ENSMZEG00005023305	ENSMZEG00005023307	ENSMZEG00005023309	ppp1r3b (ENSMZEG00005023310)
Eastern happy	MODERN SPECIES	19	CPA1 (ENSACLG00000012457)	CPA1 (ENSACLG00000012419)	cep41 (ENSACLG00000012383)	poc1b (ENSACLG00000012360)	dusp6 (ENSACLG00000012334)	ENSACLG00000012298	ENSACLG00000012273	TCF7L1 (ENSACLG00000011476)	ATP6V1B2 (ENSACLG00000011445) ##15	ENSACLG00000011433	ENSACLG00000011142	ENSACLG00000011135	GFRA2 (ENSACLG00000010980) #17	xpo7 (ENSACLG00000010791) #19	pbdc1 (ENSACLG00000010774)	dmtn (ENSACLG00000010704) #22	ppp3ccb (ENSACLG00000010653) ##35	hpse (ENSACLG00000010619)	HELQ (ENSACLG00000010558)	mrps18c (ENSACLG00000010521)	abraxas1 (ENSACLG00000010501)	gpat3 (ENSACLG00000010444)	ENSACLG00000009622	nkx6.1 (ENSACLG00000009617)	rpl17 (ENSACLG00000009583)	MFHAS1 (ENSACLG00000009577)	ENSACLG00000009571	ENSACLG00000009558	ENSACLG00000009555	ENSACLG00000009552	ENSACLG00000009348
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466
Oryzias	ANCESTRAL SPECIES	9	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT01090000260978	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00990000208027	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT01090000260978	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466
Japanese Medaka HdrR	MODERN SPECIES	3	marchf5l (ENSORLG00000000280)	actr1b (ENSORLG00000025734)	npy8ar (ENSORLG00000000273)	ENSORLG00000024890	COX5B (ENSORLG00000019521)	ENSORLG00000022498	ENSORLG00000026012	tcf7l1a (ENSORLG00000022421)	ENSORLG00000023584	dusp11 (ENSORLG00000023976)	ATP6V1B2 (ENSORLG00000029718) ##15	ENSORLG00000022641	GFRA2 (ENSORLG00000029388) #17	xpo7 (ENSORLG00000025259) #19	pbdc1 (ENSORLG00000019795)	dmtn (ENSORLG00000030150) #22	ppp3ccb (ENSORLG00000026198) ##35	hpse (ENSORLG00000020343)	HELQ (ENSORLG00000022717)	ENSORLG00000027371	abraxas1 (ENSORLG00000022037)	gpat3 (ENSORLG00000023001)	nkx6.1 (ENSORLG00000019018)	ENSORLG00000028484	rpl17 (ENSORLG00000028403)	MFHAS1 (ENSORLG00000022182)	lmbrd2b (ENSORLG00000022269)	ppp1r3b (ENSORLG00000020468)	ENSORLG00000028036	myo5b (ENSORLG00000028096)	myo5b (ENSORLG00000018326)
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000154704.c.c	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT01090000260978	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466
Indian medaka	MODERN SPECIES	30	actr1b (ENSOMEG00000004609)	npy8ar (ENSOMEG00000004622)	ENSOMEG00000004632	COX5B (ENSOMEG00000004641)	ENSOMEG00000004663	tcf7l1a (ENSOMEG00000004675)	ENSOMEG00000004697	dusp11 (ENSOMEG00000004705)	ENSOMEG00000004713	ATP6V1B2 (ENSOMEG00000004736) ##15	ENSOMEG00000000874	GFRA2 (ENSOMEG00000004769) #17	ENSOMEG00000004783	xpo7 (ENSOMEG00000004832) #19	pbdc1 (ENSOMEG00000004797)	dmtn (ENSOMEG00000004866) #22	ppp3ccb (ENSOMEG00000004900) ##35	hpse (ENSOMEG00000004923)	HELQ (ENSOMEG00000004983)	mrps18c (ENSOMEG00000005009)	abraxas1 (ENSOMEG00000005029)	gpat3 (ENSOMEG00000005047)	nkx6.1 (ENSOMEG00000005058)	rpl17 (ENSOMEG00000005081)	MFHAS1 (ENSOMEG00000005094)	lmbrd2b (ENSOMEG00000005113)	ppp1r3b (ENSOMEG00000005119)	ENSOMEG00000005130	myo5b (ENSOMEG00000005222)	ENSOMEG00000005239	capslb (ENSOMEG00000005269)
Javanese ricefish	MODERN SPECIES	3	stc1l (ENSOJAG00000007558)	ENSOJAG00000007653	kctd9b (ENSOJAG00000012023)	marchf5l (ENSOJAG00000012113)	actr1b (ENSOJAG00000012118)	npy8ar (ENSOJAG00000012195)	COX5B (ENSOJAG00000012217)	ENSOJAG00000012228	ENSOJAG00000012239	tcf7l1a (ENSOJAG00000012257)	ENSOJAG00000012269	dusp11 (ENSOJAG00000012276)	GFRA2 (ENSOJAG00000012287) #17	ENSOJAG00000012326	pbdc1 (ENSOJAG00000012370)	dmtn (ENSOJAG00000012376) #22	ppp3ccb (ENSOJAG00000012553) ##35	hpse (ENSOJAG00000014729)	ENSOJAG00000014738	mrps18c (ENSOJAG00000015075)	abraxas1 (ENSOJAG00000015086)	nkx6.1 (ENSOJAG00000015395)	rpl17 (ENSOJAG00000015430)	MFHAS1 (ENSOJAG00000015475)	ppp1r3b (ENSOJAG00000015591)	ENSOJAG00000015608	myo5b (ENSOJAG00000015623)	ENSOJAG00000015658	capslb (ENSOJAG00000015672)	slc31a1 (ENSOJAG00000015685)	atp6v1g1 (ENSOJAG00000015700)
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000157326	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c
Cyprinodontoidei	ANCESTRAL SPECIES	36	ENSGT00940000157326	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945	ENSGT00940000156369
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000157326	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d.g	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945	ENSGT00940000156369
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000157326	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.n	ENSGT00390000011010.a.a.m	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d.g	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945
NAME_6	ANCESTRAL SPECIES	111	ENSGT00940000157326	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.n	ENSGT00390000011010.a.a.m	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d.g	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00410000025802	ENSGT00940000157873	ENSGT00530000064469	ENSGT00940000156510.h	ENSGT00390000004945
Amazon molly	MODERN SPECIES	557								PAM (ENSPFOG00000021753)	ENSPFOG00000023791	ATP6V1B2 (ENSPFOG00000006973) ##15	GFRA2 (ENSPFOG00000006931) #17	ENSPFOG00000021790	ENSPFOG00000006913	xpo7 (ENSPFOG00000006620) #19	pbdc1 (ENSPFOG00000006527)	dmtn (ENSPFOG00000006452) #22	ppp3ccb (ENSPFOG00000006179) ##35	hpse (ENSPFOG00000005950)	ENSPFOG00000005850	COX5B (ENSPFOG00000005827)	COX5B (ENSPFOG00000005799)	npy8ar (ENSPFOG00000005748)	actr1b (ENSPFOG00000005649)	marchf5l (ENSPFOG00000005642)	FGFR1 (ENSPFOG00000005362)	stc1l (ENSPFOG00000005286)	ENSPFOG00000005275	reep5 (ENSPFOG00000005207)	ENSPFOG00000005127	TSHR (ENSPFOG00000004844)	pomk (ENSPFOG00000004795)
Sailfin molly	MODERN SPECIES	218														xpo7 (ENSPLAG00000012688) #19	pbdc1 (ENSPLAG00000012728)	dmtn (ENSPLAG00000012761) #22	ppp3ccb (ENSPLAG00000012804) ##35	hpse (ENSPLAG00000012813)	dbnla (ENSPLAG00000012851)	COX5B (ENSPLAG00000012868)	npy8ar (ENSPLAG00000012889)	actr1b (ENSPLAG00000012936)	marchf5l (ENSPLAG00000012957)	ENSPLAG00000012981	FGFR1 (ENSPLAG00000013010)	stc1l (ENSPLAG00000013025)	ENSPLAG00000013032	reep5 (ENSPLAG00000000824)	ENSPLAG00000013068	ENSPLAG00000013114	pomk (ENSPLAG00000013128)
Guppy	MODERN SPECIES	442	MFHAS1 (ENSPREG00000012401)	rpl17 (ENSPREG00000012415)	nkx6.1 (ENSPREG00000012467)	ENSPREG00000012492	gpat3 (ENSPREG00000012518)	abraxas1 (ENSPREG00000012574)	mrps18c (ENSPREG00000012593)	HELQ (ENSPREG00000012605)	ENSPREG00000012639	ENSPREG00000012655	dusp11 (ENSPREG00000012668)	ATP6V1B2 (ENSPREG00000012684) ##15	GFRA2 (ENSPREG00000012717) #17	xpo7 (ENSPREG00000012766) #19	pbdc1 (ENSPREG00000012829)	dmtn (ENSPREG00000012844) #22	ppp3ccb (ENSPREG00000012883) ##35	hpse (ENSPREG00000012925)	ENSPREG00000012952	COX5B (ENSPREG00000012969)	COX5B (ENSPREG00000012980)	npy8ar (ENSPREG00000012998)	actr1b (ENSPREG00000013010)	marchf5l (ENSPREG00000013049)	ENSPREG00000013077	FGFR1 (ENSPREG00000013099)	stc1l (ENSPREG00000013159)	ENSPREG00000013177	reep5 (ENSPREG00000013185)	ENSPREG00000013208	ENSPREG00000013234
Platyfish	MODERN SPECIES	22	ENSXMAG00000026289	MFHAS1 (ENSXMAG00000000212)	rpl17 (ENSXMAG00000012219)	nkx6.1 (ENSXMAG00000020939)	gpat3 (ENSXMAG00000012498)	mrps18c (ENSXMAG00000012555)	ENSXMAG00000012563	tcf7l1a (ENSXMAG00000012205)	ENSXMAG00000028643	dusp11 (ENSXMAG00000023145)	ATP6V1B2 (ENSXMAG00000012143) ##15	GFRA2 (ENSXMAG00000023717) #17	ENSXMAG00000010553	xpo7 (ENSXMAG00000000433) #19	pbdc1 (ENSXMAG00000025033)	dmtn (ENSXMAG00000029718) #22	ppp3ccb (ENSXMAG00000000406) ##35	hpse (ENSXMAG00000000390)	dbnla (ENSXMAG00000000382)	ENSXMAG00000000374	npy8ar (ENSXMAG00000000370)	actr1b (ENSXMAG00000000355)	marchf5l (ENSXMAG00000000352)	ENSXMAG00000022806	FGFR1 (ENSXMAG00000016402)	stc1l (ENSXMAG00000016392)	ENSXMAG00000016389	reep5 (ENSXMAG00000016377)	ENSXMAG00000025347	ENSXMAG00000016373	TSHR (ENSXMAG00000016333)
NAME_4	ANCESTRAL SPECIES	382														ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.o
Mummichog	MODERN SPECIES	2267	kmt5aa (ENSFHEG00000007384)	RILPL1 (ENSFHEG00000007463)	ENSFHEG00000007491	fbxo18 (ENSFHEG00000007533)	HIP1R (ENSFHEG00000007666)	ENSFHEG00000007683	denr (ENSFHEG00000007729)	ENSFHEG00000007739	ENSFHEG00000007767	ENSFHEG00000007782	bcl7a (ENSFHEG00000007792)	eif2b1 (ENSFHEG00000007837)	ddx55 (ENSFHEG00000007912)	xpo7 (ENSFHEG00000007999) #19	pbdc1 (ENSFHEG00000008012)	dmtn (ENSFHEG00000008041) #22	ppp3ccb (ENSFHEG00000008093) ##35	hpse (ENSFHEG00000008117)	ENSFHEG00000008136	COX5B (ENSFHEG00000000204)
Aplocheiloidei	ANCESTRAL SPECIES	62	ENSGT00940000157326	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a
Turquoise killifish	MODERN SPECIES	1623	gtf2f2b (ENSNFUG00015004982)	ENSNFUG00015004998	ENSNFUG00015005002	ENSNFUG00015005006	COL5A2 (ENSNFUG00015005052)	GULP1 (ENSNFUG00015005561)	asmt (ENSNFUG00015005631)	ENSNFUG00015005649	DHRSX (ENSNFUG00015005653)	ENSNFUG00015005659	ENSNFUG00015005665	ENSNFUG00015005686 #17	xpo7 (ENSNFUG00015005734) #19	ENSNFUG00015005805	PBDC1 (ENSNFUG00015005809)	dmtn (ENSNFUG00015005817) #22	ppp3ccb (ENSNFUG00015005852) ##35	hpse (ENSNFUG00015006098)	ENSNFUG00015006108	DBNL (ENSNFUG00015006118)	Nfu_g_1_014200 (ENSNFUG00015006129)	slc12a2 (ENSNFUG00015006560)	slc27a6 (ENSNFUG00015012283)	lmnb1 (ENSNFUG00015012943)	prrc1 (ENSNFUG00015013046)	megf10 (ENSNFUG00015013109)	ENSNFUG00015013896	REEP5 (ENSNFUG00015013902)	SPTLC1 (ENSNFUG00015013928)	FBXW2 (ENSNFUG00015013997)	prkag3b (ENSNFUG00015014015)
Mangrove rivulus	MODERN SPECIES	101	MFHAS1 (ENSKMAG00000016229)	rpl17 (ENSKMAG00000016257)	nkx6.1 (ENSKMAG00000016346)	gpat3 (ENSKMAG00000016366)	ENSKMAG00000016409	abraxas1 (ENSKMAG00000016436)	mrps18c (ENSKMAG00000016467)	HELQ (ENSKMAG00000016486)	tcf7l1a (ENSKMAG00000016503)	ENSKMAG00000016521	dusp11 (ENSKMAG00000016529)	ATP6V1B2 (ENSKMAG00000016556) ##15	GFRA2 (ENSKMAG00000016668) #17	xpo7 (ENSKMAG00000016721) #19	pbdc1 (ENSKMAG00000016856)	dmtn (ENSKMAG00000016868) #22	ppp3ccb (ENSKMAG00000016898) ##35	hpse (ENSKMAG00000016940)	dbnla (ENSKMAG00000016958)	COX5B (ENSKMAG00000016989)
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT01030000234908
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.b.a.a	ENSGT00950000183234	ENSGT00940000155402.a.b
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.b.a.a.d	ENSGT00950000183234	ENSGT00940000155402.a.b
Ballan wrasse	MODERN SPECIES	94														xpo7 (ENSLBEG00000018784) #19	pbdc1 (ENSLBEG00000018849)	dmtn (ENSLBEG00000018887) #22	ppp3ccb (ENSLBEG00000018935) ##35	hpse (ENSLBEG00000018994)	HELQ (ENSLBEG00000019017)	abraxas1 (ENSLBEG00000019087)	mrps18c (ENSLBEG00000019174)	gpat3 (ENSLBEG00000019197)	nkx6.1 (ENSLBEG00000019245)	rpl17 (ENSLBEG00000019276)	MFHAS1 (ENSLBEG00000019368)	ugcg (ENSLBEG00000019387)	PTBP3 (ENSLBEG00000019422)	hsdl2 (ENSLBEG00000019478)	ENSLBEG00000019533	capslb (ENSLBEG00000019559)	ENSLBEG00000019590
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.b.a.b	ENSGT00950000183234	ENSGT00940000155402.a.b
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000161587	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000165965	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.b.a.b	ENSGT00950000183234	ENSGT00940000155402.a.b
Cottioidei	ANCESTRAL SPECIES	77							ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466
Lumpfish	MODERN SPECIES	3				marchf5l (ENSCLMG00005005968)	ACTR1B (ENSCLMG00005005975)	npy8ar (ENSCLMG00005006266)	COX5B (ENSCLMG00005006269)	dbnla (ENSCLMG00005006270)	tcf7l1a (ENSCLMG00005006271)	ENSCLMG00005006275	dusp11 (ENSCLMG00005006277)	ENSCLMG00005006281 #17	ENSCLMG00005006283 #17	xpo7 (ENSCLMG00005006304) #19	pbdc1 (ENSCLMG00005006578)	dmtn (ENSCLMG00005006579) #22	PPP3CB (ENSCLMG00005006624) ##35	hpse (ENSCLMG00005010845)	HELQ (ENSCLMG00005010853)	mrps18c (ENSCLMG00005010864)	ENSCLMG00005010865	ENSCLMG00005010866	nkx6.1 (ENSCLMG00005010867)	rpl17 (ENSCLMG00005010868)	MFHAS1 (ENSCLMG00005010874)	lmbrd2b (ENSCLMG00005010878)	ENSCLMG00005010943	ENSCLMG00005010944	myo5b (ENSCLMG00005010955)	ENSCLMG00005011660	capslb (ENSCLMG00005011661)
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000161587	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a
Channel bull blenny	MODERN SPECIES	237															pbdc1 (ENSCGOG00000007751)	dmtn (ENSCGOG00000007759) #22
Pike perch	MODERN SPECIES	74	ENSSLUG00000010801	ENSSLUG00000010794	ENSSLUG00000010787	ENSSLUG00000010781	ENSSLUG00000010776	ENSSLUG00000010774	dusp11 (ENSSLUG00000010771)	ATP6V1B2 (ENSSLUG00000010743) ##15	GFRA2 (ENSSLUG00000010730) #17	ENSSLUG00000010726	ENSSLUG00000010724	xpo7 (ENSSLUG00000007107) #19	ENSSLUG00000006823	ENSSLUG00000006821	pbdc1 (ENSSLUG00000006808)	dmtn (ENSSLUG00000006796) #22	ppp3ccb (ENSSLUG00000002445) ##35	MYL5 (ENSSLUG00000002188)	hpse (ENSSLUG00000002177)	ENSSLUG00000002174	ENSSLUG00000002171	HELQ (ENSSLUG00000001903)	mrps18c (ENSSLUG00000001799)	abraxas1 (ENSSLUG00000001792)	gpat3 (ENSSLUG00000001734)
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.b.a.b	ENSGT00950000183234	ENSGT00940000155402.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a
European seabass	MODERN SPECIES	18	ENSDLAG00005028917	ENSDLAG00005019858	ENSDLAG00005019828	ENSDLAG00005019720	ENSDLAG00005010546	ENSDLAG00005032993	tcf7l1a (ENSDLAG00005014881)	ENSDLAG00005012307	ENSDLAG00005032024	ENSDLAG00005005667	ENSDLAG00005005593 ##15	GFRA2 (ENSDLAG00005027802) #17	pbdc1 (ENSDLAG00005034167)	xpo7 (ENSDLAG00005003106) #19	ENSDLAG00005027132 ##35	ENSDLAG00005026881 #22	ENSDLAG00005024328	HELQ (ENSDLAG00005024295)	mrps18c (ENSDLAG00005024288)	abraxas1 (ENSDLAG00005024284)	gpat3 (ENSDLAG00005024256)	ENSDLAG00005028985	ENSDLAG00005024227	ENSDLAG00005024234	ENSDLAG00005034189	ENSDLAG00005014478	ENSDLAG00005026354	ENSDLAG00005027118	ENSDLAG00005033707	meis2b (ENSDLAG00005020388)	gjd2b (ENSDLAG00005020379)
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005004914	actr1b (ENSLCRG00005004765)	npy8ar (ENSLCRG00005004758)	ENSLCRG00005004757	ENSLCRG00005004756	ENSLCRG00005004751	COX5B (ENSLCRG00005004745)	dbnla (ENSLCRG00005004741)	tcf7l1a (ENSLCRG00005004734)	ENSLCRG00005004732	dusp11 (ENSLCRG00005004730)	ATP6V1B2 (ENSLCRG00005004655) ##15	ENSLCRG00005004651 #17	xpo7 (ENSLCRG00005003644) #19	pbdc1 (ENSLCRG00005003631)	dmtn (ENSLCRG00005003630) #22	ppp3ccb (ENSLCRG00005003155) ##35	MYL5 (ENSLCRG00005003106)	hpse (ENSLCRG00005003105)	ENSLCRG00005003103	ENSLCRG00005003070	ENSLCRG00005003055	galnt11 (ENSLCRG00005003033)	gcm2 (ENSLCRG00005003026)	ENSLCRG00005003020	ENSLCRG00005002240	zbtb14 (ENSLCRG00005002230)	lama1 (ENSLCRG00005001291)	ENSLCRG00005001261	ENSLCRG00005001188	ENSLCRG00005001069
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010012741	dusp11 (ENSSAUG00010012742)	ATP6V1B2 (ENSSAUG00010012776) ##15	ENSSAUG00010015429	ENSSAUG00010015430	ENSSAUG00010015431	xpo7 (ENSSAUG00010015454) #19	pbdc1 (ENSSAUG00010018718)	dmtn (ENSSAUG00010018729) #22	ENSSAUG00010018905	ppp3ccb (ENSSAUG00010018912) ##35	MYL5 (ENSSAUG00010020284)	hpse (ENSSAUG00010020296)	HELQ (ENSSAUG00010020300)	ENSSAUG00010020302	dmtn (ENSSAUG00010020304) #22	ppp3ccb (ENSSAUG00010020322) ##35	hpse (ENSSAUG00010020907)	mrps18c (ENSSAUG00010020909)	abraxas1 (ENSSAUG00010020919)	ENSSAUG00010020923	ENSSAUG00010020926	ENSSAUG00010020927	ENSSAUG00010020931	ENSSAUG00010020934	ENSSAUG00010010538	ENSSAUG00010010540	ENSSAUG00010010542	ENSSAUG00010010543	ENSSAUG00010010544	capslb (ENSSAUG00010010546)
Gilthead seabream	MODERN SPECIES	3	COX5B (ENSSAUG00010012698)	ENSSAUG00010012711	ENSSAUG00010012714	dbnla (ENSSAUG00010012717)	tcf7l1a (ENSSAUG00010012735)	ENSSAUG00010012738	ENSSAUG00010012739	ENSSAUG00010012741	dusp11 (ENSSAUG00010012742)	ATP6V1B2 (ENSSAUG00010012776) ##15	ENSSAUG00010015429	ENSSAUG00010015430	ENSSAUG00010015431	xpo7 (ENSSAUG00010015454) #19	pbdc1 (ENSSAUG00010018718)	dmtn (ENSSAUG00010018729) #22	ENSSAUG00010018905	ppp3ccb (ENSSAUG00010018912) ##35	MYL5 (ENSSAUG00010020284)	hpse (ENSSAUG00010020296)	HELQ (ENSSAUG00010020300)	ENSSAUG00010020302	dmtn (ENSSAUG00010020304) #22	ppp3ccb (ENSSAUG00010020322) ##35	hpse (ENSSAUG00010020907)	mrps18c (ENSSAUG00010020909)	abraxas1 (ENSSAUG00010020919)	ENSSAUG00010020923	ENSSAUG00010020926	ENSSAUG00010020927	ENSSAUG00010020931
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00530000062932	ENSGT00940000155214.k.a	ENSGT00440000039084.a.b	ENSGT00390000001761	ENSGT00940000165981	ENSGT00530000064123
Fugu	MODERN SPECIES	18	FGFR1 (ENSTRUG00000018627)	kctd9b (ENSTRUG00000018628)	marchf5l (ENSTRUG00000018629)	actr1b (ENSTRUG00000018630)	npy8ar (ENSTRUG00000018631)	dbnla (ENSTRUG00000018633)	tcf7l1a (ENSTRUG00000018634)	ENSTRUG00000018635	ATP6V1B2 (ENSTRUG00000018637) ##15	GFRA2 (ENSTRUG00000018638) #17	ENSTRUG00000033476	ENSTRUG00000030281	ENSTRUG00000032753	xpo7 (ENSTRUG00000001082) #19	pbdc1 (ENSTRUG00000027342)	dmtn (ENSTRUG00000018641) #22	ppp3ccb (ENSTRUG00000018642) ##35	hpse (ENSTRUG00000018643)	HELQ (ENSTRUG00000018644)	mrps18c (ENSTRUG00000028095)	abraxas1 (ENSTRUG00000018645)	gpat3 (ENSTRUG00000018646)	NKX6-1 (ENSTRUG00000026306)	rpl17 (ENSTRUG00000025797)	MFHAS1 (ENSTRUG00000018650)	golga2 (ENSTRUG00000018651)	dnm1a (ENSTRUG00000018652)	ENSTRUG00000018653	bbln (ENSTRUG00000028996)	surf2 (ENSTRUG00000018655)	surf4 (ENSTRUG00000018656)
Tetraodon	MODERN SPECIES	19	kctd9b (ENSTNIG00000013598)	marchf5l (ENSTNIG00000013599)	actr1b (ENSTNIG00000013600)	npy8ar (ENSTNIG00000013601)	COX5B (ENSTNIG00000013602)	dbnla (ENSTNIG00000013603)	tcf7l1a (ENSTNIG00000013604)	ENSTNIG00000013605	dusp11 (ENSTNIG00000013606)	ENSTNIG00000013607 ##15	ENSTNIG00000013608	ENSTNIG00000000400	GFRA2 (ENSTNIG00000013609) #17	xpo7 (ENSTNIG00000004671) #19	pbdc1 (ENSTNIG00000005669)	dmtn (ENSTNIG00000005670) #22	ppp3ccb (ENSTNIG00000005671) ##35	hpse (ENSTNIG00000005672)	HELQ (ENSTNIG00000005673)	mrps18c (ENSTNIG00000005674)	abraxas1 (ENSTNIG00000005675)	gpat3 (ENSTNIG00000005676)	nkx6.1 (ENSTNIG00000009010)	rpl17 (ENSTNIG00000009011)	MFHAS1 (ENSTNIG00000009012)	golga2 (ENSTNIG00000009013)	dnm1a (ENSTNIG00000009014)	ENSTNIG00000009015	bbln (ENSTNIG00000009016)	surf2 (ENSTNIG00000009017)	surf4 (ENSTNIG00000004786)
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023.b	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT00510000049239.b.a
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023.b	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.a	ENSGT00950000183234	ENSGT00940000155402.a.b
Zig-zag eel	MODERN SPECIES	3	stc1l (ENSMAMG00000011830)	ENSMAMG00000011845	kctd9b (ENSMAMG00000011867)	ENSMAMG00000011920	ENSMAMG00000011939	npy8ar (ENSMAMG00000011965)	ENSMAMG00000011987	dbnla (ENSMAMG00000011997)	tcf7l1a (ENSMAMG00000012013)	ENSMAMG00000012036	ENSMAMG00000012062	ENSMAMG00000012090 ##15	GFRA2 (ENSMAMG00000012126) #17	xpo7 (ENSMAMG00000012156) #19	pbdc1 (ENSMAMG00000012250)	dmtn (ENSMAMG00000012271) #22	ENSMAMG00000012284 ##35	ENSMAMG00000012337	hpse (ENSMAMG00000012352)	HELQ (ENSMAMG00000012364)	mrps18c (ENSMAMG00000026215)	abraxas1 (ENSMAMG00000012397)	gpat3 (ENSMAMG00000012423)	ENSMAMG00000012447	nkx6.1 (ENSMAMG00000012450)	ENSMAMG00000012465	ENSMAMG00000012520	ENSMAMG00000012527	ENSMAMG00000012536	ENSMAMG00000012591	ENSMAMG00000012597
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d	ENSGT01030000234539.b.b.a.i	ENSGT00940000165717	ENSGT00940000158107.a.a	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023.b	ENSGT00390000004874.a.b	ENSGT00940000161682.i	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00500000044904.a.b.e.a	ENSGT00950000183234
Climbing perch	MODERN SPECIES	3	ENSATEG00000000460	ENSATEG00000000436	ENSATEG00000000411	ENSATEG00000000385	DUSP26 (ENSATEG00000027239)	ENSATEG00000000343	dbnla (ENSATEG00000000324)	tcf7l1a (ENSATEG00000025217)	ENSATEG00000000311	ENSATEG00000026312	dusp11 (ENSATEG00000000234)	ENSATEG00000000167 ##15	GFRA2 (ENSATEG00000000060) #17	xpo7 (ENSATEG00000023484) #19	pbdc1 (ENSATEG00000025714)	dmtn (ENSATEG00000023472) #22	ENSATEG00000023456 ##35	ENSATEG00000023445	hpse (ENSATEG00000023437)	ENSATEG00000023434	HELQ (ENSATEG00000023420)	mrps18c (ENSATEG00000027902)	abraxas1 (ENSATEG00000026181)	gpat3 (ENSATEG00000023407)	nkx6.1 (ENSATEG00000023404)	ENSATEG00000023387	ENSATEG00000023384	ENSATEG00000023381	ENSATEG00000023366	ENSATEG00000023346	ENSATEG00000023334
Siamese fighting fish	MODERN SPECIES	3	ENSBSLG00000014514	ENSBSLG00000014489	ZMIZ2 (ENSBSLG00000014403)	ENSBSLG00000014388	DUSP26 (ENSBSLG00000014373)	COX5B (ENSBSLG00000014362)	ENSBSLG00000014334	tcf7l1a (ENSBSLG00000014304)	ENSBSLG00000014293	ENSBSLG00000014278	dusp11 (ENSBSLG00000014263)	ATP6V1B2 (ENSBSLG00000014065) ##15	GFRA2 (ENSBSLG00000013611) #17	xpo7 (ENSBSLG00000013212) #19	pbdc1 (ENSBSLG00000013015)	dmtn (ENSBSLG00000013003) #22	ppp3ccb (ENSBSLG00000012409) ##35	ENSBSLG00000012336	HELQ (ENSBSLG00000012143)	mrps18c (ENSBSLG00000012122)	abraxas1 (ENSBSLG00000011978)	nkx6.1 (ENSBSLG00000011617)	rpl17 (ENSBSLG00000011009)	MFHAS1 (ENSBSLG00000010998)	ppp1r3b (ENSBSLG00000010990)	lmbrd2b (ENSBSLG00000010833)	ENSBSLG00000010780	capslb (ENSBSLG00000010741)	ENSBSLG00000010687	myo5b (ENSBSLG00000010335)	ENSBSLG00000010325
Carangaria	ANCESTRAL SPECIES	17	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023.b	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b	ENSGT00510000049239.b.a
Carangaria_A	ANCESTRAL SPECIES	48	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000161682.i	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a
Barramundi perch	MODERN SPECIES	605															pbdc1 (ENSLCAG00010011488)	dmtn (ENSLCAG00010011485) #22	ppp3ccb (ENSLCAG00010010739) ##35	ENSLCAG00010010564	hpse (ENSLCAG00010010557)	HELQ (ENSLCAG00010010535)	mrps18c (ENSLCAG00010010526)	abraxas1 (ENSLCAG00010010519)	gpat3 (ENSLCAG00010010484)
Seriola	ANCESTRAL SPECIES	163																ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000161682.i	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a
Greater amberjack	MODERN SPECIES	224																dmtn (ENSSDUG00000015467) #22	ppp3ccb (ENSSDUG00000015519) ##35	ENSSDUG00000015581	hpse (ENSSDUG00000015608)	HELQ (ENSSDUG00000015665)	mrps18c (ENSSDUG00000015676)	abraxas1 (ENSSDUG00000015688)	gpat3 (ENSSDUG00000015712)	nkx6.1 (ENSSDUG00000015738)	rpl17 (ENSSDUG00000015761)	MFHAS1 (ENSSDUG00000015819)	ppp1r3b (ENSSDUG00000015830)	lmbrd2b (ENSSDUG00000015850)	ENSSDUG00000015917
Yellowtail amberjack	MODERN SPECIES	2864																dmtn (ENSSLDG00000002439) #22	ENSSLDG00000002428 ##35
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000156732.a.a	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847.c	ENSGT00940000155068.a.a ##15	ENSGT00940000156168.B #17	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000163023.b	ENSGT00390000004874.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00950000183234	ENSGT00940000155402.a.b.l	ENSGT01030000234908
Turbot	MODERN SPECIES	7	ENSSMAG00000009342	stc1l (ENSSMAG00000009300)	ENSSMAG00000009265	ENSSMAG00000034455	wdr45 (ENSSMAG00000009227)	ENSSMAG00000009215	ENSSMAG00000009197	ENSSMAG00000034909	ENSSMAG00000009168	ENSSMAG00000009165	ENSSMAG00000021812 #17	ENSSMAG00000009149 #17	ENSSMAG00000036211	xpo7 (ENSSMAG00000032317) #19	pbdc1 (ENSSMAG00000029601)	dmtn (ENSSMAG00000024114) #22	ENSSMAG00000031785 ##35	ENSSMAG00000038004	HELQ (ENSSMAG00000031179)	mrps18c (ENSSMAG00000037445)	abraxas1 (ENSSMAG00000037441)	gpat3 (ENSSMAG00000035292)	nkx6.1 (ENSSMAG00000008198)	ENSSMAG00000008225	ENSSMAG00000008230	ENSSMAG00000008242	ENSSMAG00000031721	ENSSMAG00000008284	ENSSMAG00000029577	ENSSMAG00000031401	ENSSMAG00000008409
Tongue sole	MODERN SPECIES	5	rbm18 (ENSCSEG00000017587)	lhx6a (ENSCSEG00000017597)	morn5 (ENSCSEG00000017608)	ndufa8 (ENSCSEG00000017614)	si:ch211-243g18.2 (ENSCSEG00000017629)	rbp4l (ENSCSEG00000017648)	PDE6B (ENSCSEG00000017653)	ENSCSEG00000017669	ENSCSEG00000017672	nnt (ENSCSEG00000017705)	ENSCSEG00000017731	fgf10a (ENSCSEG00000017732)	GFRA2 (ENSCSEG00000017738) #17	xpo7 (ENSCSEG00000017746) #19	pbdc1 (ENSCSEG00000017787)	dmtn (ENSCSEG00000017799) #22	ATP6V1B2 (ENSCSEG00000017810) ##15	dusp11 (ENSCSEG00000017836)	ENSCSEG00000017847	ENSCSEG00000017856	wdr91 (ENSCSEG00000017864)	hmgcs1 (ENSCSEG00000017895)	YTHDC2 (ENSCSEG00000017911)	psmb10 (ENSCSEG00000017959)	ndor1 (ENSCSEG00000017975)	ntmt1 (ENSCSEG00000017989)	ier5l (ENSCSEG00000017996)	ptpa (ENSCSEG00000018006)	crata (ENSCSEG00000018060)	ENSCSEG00000018101	june (ENSCSEG00000018115)
Pinecone sodierfish	MODERN SPECIES	3	kctd9b (ENSMMDG00005020743)	marchf5l (ENSMMDG00005020746)	ACTR1B (ENSMMDG00005020749)	npy8ar (ENSMMDG00005020758)	COX5B (ENSMMDG00005020951)	ENSMMDG00005020953	tcf7l1a (ENSMMDG00005020954)	ENSMMDG00005020957	dusp11 (ENSMMDG00005020958)	ATP6V1B2 (ENSMMDG00005020967) ##15	ENSMMDG00005021017	ENSMMDG00005021018 #17	GFRA2 (ENSMMDG00005021022) #17	xpo7 (ENSMMDG00005021048) #19	pbdc1 (ENSMMDG00005021844)	dmtn (ENSMMDG00005021847) #22	ppp3ccb (ENSMMDG00005021889) ##35	MYL5 (ENSMMDG00005022949)	hpse (ENSMMDG00005022951)	HELQ (ENSMMDG00005022960)	mrps18c (ENSMMDG00005022973)	abraxas1 (ENSMMDG00005022974)	gpat3 (ENSMMDG00005022976)	nkx6.1 (ENSMMDG00005022979)	rpl17 (ENSMMDG00005022980)	ENSMMDG00005022986	lmbrd2b (ENSMMDG00005023002)	capslb (ENSMMDG00005023108)	ENSMMDG00005023113	myo5b (ENSMMDG00005023295)	cfap53 (ENSMMDG00005024746)
Cod	MODERN SPECIES	17	ENSGMOG00000026568	stc1l (ENSGMOG00000030223)	ENSGMOG00000012944	kctd9b (ENSGMOG00000014201)	ENSGMOG00000028456	ENSGMOG00000017491	npy8ar (ENSGMOG00000017513)	ENSGMOG00000030473	dbnla (ENSGMOG00000027970)	tcf7l1a (ENSGMOG00000006333)	ENSGMOG00000034173	dusp11 (ENSGMOG00000028702)	ENSGMOG00000008712 #17	xpo7 (ENSGMOG00000019505) #19	pbdc1 (ENSGMOG00000019503)	dmtn (ENSGMOG00000025083) #22	ENSGMOG00000000016 ##35	ENSGMOG00000012980	hpse (ENSGMOG00000000018)	HELQ (ENSGMOG00000000020)	mrps18c (ENSGMOG00000032590)	ENSGMOG00000000023	ENSGMOG00000035135	gpat3 (ENSGMOG00000031783)	nkx6.1 (ENSGMOG00000029517)	ENSGMOG00000012984	ENSGMOG00000025798	lmbrd2b (ENSGMOG00000012999)	ENSGMOG00000019290	ENSGMOG00000035554	myo5b (ENSGMOG00000019264)
Protacanthopterygii	ANCESTRAL SPECIES	77	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00940000153654.af	ENSGT00940000180245	ENSGT00940000153654.`f.b	ENSGT00950000182772.B.a.a	ENSGT00940000155679.d	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000154115.d ##35	ENSGT00940000166302.d	ENSGT00400000024390	ENSGT00390000002216	ENSGT00940000155460	ENSGT00390000015757.y	ENSGT00940000157438.d	ENSGT00390000015757.z	ENSGT00940000164013	ENSGT00670000098179.d.b	ENSGT00670000098179.d.a	ENSGT00940000156161.A	ENSGT00940000159066	ENSGT00940000168590	ENSGT00940000155983.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	353	ENSGT00940000157468.b.o	ENSGT00940000156428.bd	ENSGT00940000155101.e.j	ENSGT00950000183174.A.c	ENSGT00500000044909.c	ENSGT00950000182888.b.e.a	ENSGT00950000182869.e.b.g.b.d	ENSGT00550000074856.c.a.c	ENSGT00550000074798.a.a.q.a	ENSGT00940000159978.s.a	ENSGT00940000153654.`f.b	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000155679.d.e.a	ENSGT00940000153139.B.a.c #19	ENSGT00390000016333.i	ENSGT00950000182850.a.b.b.b.b.g #22	ENSGT00940000154115.d.d ##35	ENSGT00400000024390.c	ENSGT00390000002216.c.b	ENSGT00940000155460.n.b	ENSGT00940000157438.d.c	ENSGT00390000015757.z	ENSGT00940000164013	ENSGT00670000098179.d.b.a.a.b	ENSGT00670000098179.d.b.a.a.a	ENSGT00670000098179.d.a.k	ENSGT00940000156161.A.p
Salmoninae_a	ANCESTRAL SPECIES	87	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b.o	ENSGT00940000155101.e.j	ENSGT00950000183174.A.c	ENSGT00500000044909.c	ENSGT00950000182888.b.e.a	ENSGT00950000182869.e.b.g.b.d	ENSGT00550000074856.c.a.c	ENSGT00550000074798.a.a.q.a	ENSGT00940000159978.s.a	ENSGT00940000153654.`f.b	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000155679.d.e.a	ENSGT00940000153139.B.a.c #19	ENSGT00390000016333.i	ENSGT00950000182850.a.b.b.b.b.g #22	ENSGT00940000154115.d.d ##35	ENSGT00400000024390.c	ENSGT00390000002216.c.b	ENSGT00940000155460.n.b	ENSGT00940000157438.d.c	ENSGT00390000015757.z	ENSGT00940000164013	ENSGT00670000098179.d.b.a.a.b	ENSGT00670000098179.d.b.a.a.a	ENSGT00670000098179.d.a.k	ENSGT00940000156161.A.o.a	ENSGT00940000159066.e	ENSGT00940000155983.a.b.d	ENSGT00390000009453.gb.c	ENSGT01100000263544.c.a.a.b.g
Oncorhynchus	ANCESTRAL SPECIES	67	ENSGT00940000157468.b.o	ENSGT00940000156428.bd	ENSGT00940000155101.e.j	ENSGT00950000183174.A.c	ENSGT00500000044909.c	ENSGT00950000182888.b.e.a	ENSGT00950000182869.e.b.g.b.d	ENSGT00550000074856.c.a.c	ENSGT00550000074798.a.a.q.a	ENSGT00940000159978.s.a	ENSGT00940000153654.af	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000155679.d.e.a	ENSGT00940000153139.B.a.c #19	ENSGT00390000016333.i	ENSGT00950000182850.a.b.b.b.b.g #22	ENSGT00940000154115.d.d ##35	ENSGT00400000024390.c	ENSGT00390000002216.c.b	ENSGT00940000155460.n.b	ENSGT00940000157438.d.c	ENSGT00390000015757.z	ENSGT00940000164013.d	ENSGT00670000098179.d.b.a.a.b	ENSGT00670000098179.d.b.a.a.a	ENSGT00670000098179.d.a.k	ENSGT00940000156161.A.o.a	ENSGT00940000159066.e	ENSGT00940000155983.a.b.d	ENSGT00390000009453.gb.c	ENSGT01100000263544.c.a.a.b.g
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000074688	ENSOMYG00000000862	ENSOMYG00000000664	ENSOMYG00000000080	tor4aa (ENSOMYG00000047398)	ENSOMYG00000047378	ENSOMYG00000071407	ENSOMYG00000047340	pi4kaa (ENSOMYG00000047266)	ENSOMYG00000047251	ENSOMYG00000048403	ENSOMYG00000047234	ENSOMYG00000047150	xpo7 (ENSOMYG00000046957) #19	ENSOMYG00000046802	dmtn (ENSOMYG00000021598) #22	ENSOMYG00000046720	spp1 (ENSOMYG00000046677)	ENSOMYG00000046671	vldlr (ENSOMYG00000044977)	ENSOMYG00000044771	pum3 (ENSOMYG00000044752)	ENSOMYG00000044071	ENSOMYG00000077330	ENSOMYG00000074341	ENSOMYG00000074021	ENSOMYG00000072873	ENSOMYG00000050153	ENSOMYG00000061803	ENSOMYG00000049388	ENSOMYG00000072385
Oncorhynchus_a	ANCESTRAL SPECIES	74	ENSGT00940000157468.b.o	ENSGT00940000156428.bd	ENSGT00940000155101.e.j	ENSGT00950000183174.A.c	ENSGT00500000044909.c	ENSGT00950000182888.b.e.a	ENSGT00950000182869.e.b.g.b.d	ENSGT00550000074856.c.a.c	ENSGT00550000074798.a.a.q.a	ENSGT00940000159978.s.a	ENSGT00940000153654.af	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000155679.d.e.a	ENSGT00940000153139.B.a.c #19	ENSGT00390000016333.i	ENSGT00950000182850.a.b.b.b.b.g #22	ENSGT00940000154115.d.d ##35	ENSGT00400000024390.c	ENSGT00390000002216.c.b	ENSGT00940000155460.n.b	ENSGT00940000157438.d.c	ENSGT00390000015757.z	ENSGT00940000164013.d	ENSGT00670000098179.d.b.a.a.b	ENSGT00670000098179.d.a.k	ENSGT00940000156161.A.o.a	ENSGT00940000159066.e	ENSGT00940000155983.a.b.d	ENSGT00390000009453.gb.c	ENSGT01100000263544.c.a.a.b.g	ENSGT00940000156471.a.e
Coho salmon	MODERN SPECIES	15	ENSOKIG00005021330	ENSOKIG00005021621	NAA25 (ENSOKIG00005021702)	brap (ENSOKIG00005021927)	tor4aa (ENSOKIG00005022121)	ENSOKIG00005022139	ENSOKIG00005006099	SLC25A1 (ENSOKIG00005006155)	pi4kaa (ENSOKIG00005006349)	HIC2 (ENSOKIG00005007498)	UBE2L5 (ENSOKIG00005007504)	ckmt2a (ENSOKIG00005007515)	RASGRF2 (ENSOKIG00005007598)	xpo7 (ENSOKIG00005008326) #19	PBDC1 (ENSOKIG00005012996)	dmtn (ENSOKIG00005013010) #22	ENSOKIG00005013086 ##35	spp1 (ENSOKIG00005014310)	ENSOKIG00005014319	vldlr (ENSOKIG00005014361)	KCNV2 (ENSOKIG00005014897)	pum3 (ENSOKIG00005014917)	ENSOKIG00005015030	ENSOKIG00005015247	ENSOKIG00005015255	ENSOKIG00005015269	ENSOKIG00005015274	ENSOKIG00005015280	ENSOKIG00005015285	ENSOKIG00005015293	ENSOKIG00005015300
Chinook salmon	MODERN SPECIES	12	ENSOTSG00005022571	ENSOTSG00005022492	PITPNB (ENSOTSG00005022480)	NAA25 (ENSOTSG00005022476)	brap (ENSOTSG00005022387)	tor4aa (ENSOTSG00005022385)	ENSOTSG00005022384	SLC25A1 (ENSOTSG00005022343)	PI4KA (ENSOTSG00005021281)	HIC2 (ENSOTSG00005021264)	UBE2L5 (ENSOTSG00005021263)	ckmt2a (ENSOTSG00005021213)	RASGRF2 (ENSOTSG00005016851)	xpo7 (ENSOTSG00005012328) #19	pbdc1 (ENSOTSG00005012291)	dmtn (ENSOTSG00005012288) #22	ppp3ccb (ENSOTSG00005011948) ##35	spp1 (ENSOTSG00005011947)	vldlr (ENSOTSG00005010375)	KCNV2 (ENSOTSG00005010374)	PUM3 (ENSOTSG00005010371)	ENSOTSG00005009184	ENSOTSG00005009175	hspb9l (ENSOTSG00005009173)	ENSOTSG00005009172	ENSOTSG00005008436	dusp4 (ENSOTSG00005008407)	ENSOTSG00005008404	zgc:86764 (ENSOTSG00005008399)	slc26a1 (ENSOTSG00005008395)	PDE6B (ENSOTSG00005006517)
Salmo	ANCESTRAL SPECIES	54	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b.o	ENSGT00940000155101.e.j	ENSGT00950000183174.A.c	ENSGT00500000044909.c	ENSGT00950000182888.b.e.a	ENSGT00950000182869.e.b.g.b.d	ENSGT00550000074856.c.a.c	ENSGT00550000074798.a.a.q.a	ENSGT00940000159978.s.a	ENSGT00940000153654.`f.b	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000155679.d.e.a	ENSGT00940000153139.B.a.c #19	ENSGT00390000016333.i	ENSGT00950000182850.a.b.b.b.b.g #22	ENSGT00940000154115.d.d ##35	ENSGT00400000024390.c	ENSGT00390000002216.c.b	ENSGT00940000155460.n.b	ENSGT00940000157438.d.c	ENSGT00390000015757.z	ENSGT00940000164013	ENSGT00670000098179.d.a.k	ENSGT00940000156161.A.o.a	ENSGT00940000159066.e	ENSGT00940000155983.a.b.d	ENSGT00390000009453.gb.c	ENSGT01100000263544.c.a.a.b.g	ENSGT00510000047107.B.c.d	ENSGT00940000156471.a.e
River trout	MODERN SPECIES	15	ENSSTUG00000025253	ENSSTUG00000025269	ENSSTUG00000025629	NAA25 (ENSSTUG00000025671)	brap (ENSSTUG00000025931)	tor4aa (ENSSTUG00000026854)	VDAC3 (ENSSTUG00000026859)	SLC25A1 (ENSSTUG00000026875)	pi4kaa (ENSSTUG00000027067)	HIC2 (ENSSTUG00000028859)	ENSSTUG00000028864	ckmt2a (ENSSTUG00000028892)	RASGRF2 (ENSSTUG00000029003)	xpo7 (ENSSTUG00000031531) #19	pbdc1 (ENSSTUG00000032741)	dmtn (ENSSTUG00000032765) #22	ppp3ccb (ENSSTUG00000032896) ##35	spp1 (ENSSTUG00000036943)	ENSSTUG00000036946	ENSSTUG00000036957	vldlr (ENSSTUG00000037262)	KCNV2 (ENSSTUG00000045706)	pum3 (ENSSTUG00000045740)	ENSSTUG00000046121	ENSSTUG00000046173	ENSSTUG00000046178	ENSSTUG00000046183	ENSSTUG00000046188	ENSSTUG00000046192	ENSSTUG00000046196	ENSSTUG00000046198
Atlantic salmon	MODERN SPECIES		ENSSSAG00000080542	ENSSSAG00000112958	ENSSSAG00000106460	ENSSSAG00000080800	brap (ENSSSAG00000080969)	tor4aa (ENSSSAG00000099633)	ENSSSAG00000080973	ENSSSAG00000100677	pi4kaa (ENSSSAG00000080982)	ENSSSAG00000080397	ENSSSAG00000110550	ckmt2 (ENSSSAG00000000174)	ENSSSAG00000000533	xpo7 (ENSSSAG00000107149) #19	ENSSSAG00000096570	dema (ENSSSAG00000001462) #22	pp2bc (ENSSSAG00000001614) ##35	spp1 (ENSSSAG00000100947)	ENSSSAG00000003155	vldlr (ENSSSAG00000003279)	ENSSSAG00000003693	pum3 (ENSSSAG00000003731)	ENSSSAG00000046417	ENSSSAG00000085506	ENSSSAG00000004003	dusp4 (ENSSSAG00000005289)	ENSSSAG00000005301	ENSSSAG00000115507	zgc:86764 (ENSSSAG00000005322)	slc26a1 (ENSSSAG00000098190)	rbp4l (ENSSSAG00000005370)
Huchen	MODERN SPECIES	919						TOR4A (ENSHHUG00000025525)	zgc:56235 (ENSHHUG00000025438)	SLC25A1 (ENSHHUG00000025395)	PI4KA (ENSHHUG00000025319)	ENSHHUG00000025313	UBE2L5 (ENSHHUG00000025304)	ckmt2a (ENSHHUG00000025161)	RASGRF2 (ENSHHUG00000025044)	xpo7 (ENSHHUG00000024568) #19	pbdc1 (ENSHHUG00000024561)	dmtn (ENSHHUG00000024558) #22	ppp3ccb (ENSHHUG00000023176) ##35	spp1 (ENSHHUG00000023157)	ENSHHUG00000023135	vldlr (ENSHHUG00000021769)	KCNV2 (ENSHHUG00000021749)	pum3 (ENSHHUG00000021703)	ENSHHUG00000021571	ENSHHUG00000021549	ENSHHUG00000021543	ENSHHUG00000021540	ENSHHUG00000021536	ENSHHUG00000021531	ENSHHUG00000021525	ENSHHUG00000021518	ENSHHUG00000021515
Salmoninae	ANCESTRAL SPECIES	824																ENSGT00950000182850.a.b.b.b.b.h #22	ENSGT00940000154115.d.c ##35	ENSGT00400000024390.d	ENSGT00390000002216.c.a	ENSGT00940000155460.n.a	ENSGT00390000015757.y	ENSGT00940000157438.d.d	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000165179.a	ENSGT00940000156428.bd	ENSGT00940000155101.e.i	ENSGT00950000183174.A.d	ENSGT00500000044909.d	ENSGT00950000182888.b.e.b	ENSGT00950000182869.e.b.g.b.c	ENSGT00550000074856.c.a.d	ENSGT00550000074798.a.a.q.b	ENSGT00940000159978.s.b	ENSGT00940000153654.af	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000155679.d.e.b	ENSGT00940000153139.B.a.d #19	ENSGT00390000016333.j	ENSGT00950000182850.a.b.b.b.b.h #22	ENSGT00940000154115.d.c ##35	ENSGT00400000024390.d	ENSGT00390000002216.c.a	ENSGT00940000155460.n.a	ENSGT00390000015757.y	ENSGT00940000157438.d.d	ENSGT00670000098179.d.b.b.a	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.b	ENSGT00940000156161.A.o.b	ENSGT00940000159066.f	ENSGT00940000168590	ENSGT00940000155983.a.b.c	ENSGT00390000009453.gb.d	ENSGT01100000263544.c.a.a.b.h
Salmo	ANCESTRAL SPECIES	13	ENSGT00940000165179.a	ENSGT00940000156428.bd	ENSGT00940000155101.e.i	ENSGT00950000183174.A.d	ENSGT00500000044909.d	ENSGT00950000182888.b.e.b	ENSGT00950000182869.e.b.g.b.c	ENSGT00550000074856.c.a.d	ENSGT00550000074798.a.a.q.b	ENSGT00940000159978.s.b	ENSGT00940000153654.af	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000155679.d.e.b	ENSGT00390000016333.j	ENSGT00940000153139.B.a.d #19	ENSGT00950000182850.a.b.b.b.b.h #22	ENSGT00940000166302.d	ENSGT00400000024390.d	ENSGT00390000002216.c.a	ENSGT00940000155460.n.a	ENSGT00390000015757.y	ENSGT00940000157438.d.d	ENSGT00670000098179.d.b.b.a	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.b	ENSGT00940000156161.A.o.b	ENSGT00940000159066.f	ENSGT00940000168590	ENSGT00940000155983.a.b.c	ENSGT00390000009453.gb.d	ENSGT01100000263544.c.a.a.b.h
River trout	MODERN SPECIES	6	ENSSTUG00000015699	ENSSTUG00000015480	ENSSTUG00000015458	pitpnb (ENSSTUG00000015426)	NAA25 (ENSSTUG00000015362)	brap (ENSSTUG00000015117)	TOR4A (ENSSTUG00000015099)	ENSSTUG00000015037	SLC25A1 (ENSSTUG00000014587)	HIC2 (ENSSTUG00000014445)	UBE2L5 (ENSSTUG00000014402)	ckmt2a (ENSSTUG00000014287)	RASGRF2 (ENSSTUG00000013940)	xpo7 (ENSSTUG00000011342) #19	pbdc1 (ENSSTUG00000011252)	dmtn (ENSSTUG00000011230) #22	ENSSTUG00000011189	ENSSTUG00000011182	spp1 (ENSSTUG00000011173)	ENSSTUG00000011123	vldlr (ENSSTUG00000002627)	KCNV2 (ENSSTUG00000002090)	ENSSTUG00000036340	hspb9l (ENSSTUG00000036326)	ENSSTUG00000036319	ENSSTUG00000035778	dusp4 (ENSSTUG00000035739)	ENSSTUG00000035727	ENSSTUG00000035712	zgc:86764 (ENSSTUG00000035618)	slc26a1 (ENSSTUG00000035599)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000080714	pitpnb (ENSSSAG00000080688)	ENSSSAG00000080629	ENSSSAG00000080521	tor4aa (ENSSSAG00000080619)	ENSSSAG00000080605	ENSSSAG00000119324	pi4kaa (ENSSSAG00000080418)	ENSSSAG00000103870	ub2l3 (ENSSSAG00000080389)	ENSSSAG00000080382	ENSSSAG00000080140	ENSSSAG00000099207	xpo7 (ENSSSAG00000119701) #19	ENSSSAG00000079534	dmtn (ENSSSAG00000094544) #22	ENSSSAG00000079106 ##35	ENSSSAG00000106802	spp1 (ENSSSAG00000091532)	spp1 (ENSSSAG00000097659)	spp1 (ENSSSAG00000095024)	ENSSSAG00000079081	vldlr (ENSSSAG00000076621)	ENSSSAG00000076475	ENSSSAG00000076482	ENSSSAG00000076468	ENSSSAG00000095488	ENSSSAG00000075230	ENSSSAG00000075168	dusp4 (ENSSSAG00000095568)	ENSSSAG00000106062
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000157468.b.p	ENSGT00940000165179.a	ENSGT00940000155101.e.i	ENSGT00950000183174.A.d	ENSGT00500000044909.d	ENSGT00950000182888.b.e.b	ENSGT00950000182869.e.b.g.b.c	ENSGT00550000074856.c.a.d	ENSGT00550000074798.a.a.q.b.b	ENSGT00940000159978.s.b	ENSGT00940000153654.`f.a.a	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000155679.d.e.b	ENSGT00940000153139.B.a.d #19	ENSGT00390000016333.j	ENSGT00950000182850.a.b.b.b.b.h #22	ENSGT00940000154115.d.c ##35	ENSGT00400000024390.d	ENSGT00390000002216.c.a	ENSGT00940000155460.n.a	ENSGT00940000157438.d.d	ENSGT00390000015757.y	ENSGT00940000164013.c	ENSGT00670000098179.d.b.b.a	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.b	ENSGT00940000156161.A.o.b	ENSGT01100000265845	ENSGT00940000159066.f	ENSGT00940000168590	ENSGT00940000155983.a.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00940000165179.a	ENSGT00940000155101.e.i	ENSGT00950000183174.A.d	ENSGT00500000044909.d	ENSGT00950000182888.b.e.b	ENSGT00950000182869.e.b.g.b.c	ENSGT00550000074856.c.a.d	ENSGT00550000074798.a.a.q.b.b	ENSGT00940000159978.s.b	ENSGT00940000153654.`f.a.a	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000155679.d.e.b	ENSGT00940000155679.d.f	ENSGT00940000153139.B.a.d #19	ENSGT00390000016333.j	ENSGT00950000182850.a.b.b.b.b.h #22	ENSGT00940000154115.d.c ##35	ENSGT00400000024390.d	ENSGT00390000002216.c.a	ENSGT00940000155460.n.a	ENSGT00940000157438.d.d	ENSGT00390000015757.y	ENSGT00940000164013.c	ENSGT00670000098179.d.b.b.a	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.b	ENSGT00940000156161.A.o.b	ENSGT01100000265845	ENSGT00940000159066.f	ENSGT00940000168590	ENSGT00940000155983.a.b.c
Chinook salmon	MODERN SPECIES	33	ptpn11a (ENSOTSG00005042626)	ENSOTSG00005042679	pla2g3 (ENSOTSG00005042681)	pitpnb (ENSOTSG00005042687)	NAA25 (ENSOTSG00005042695)	brap (ENSOTSG00005042778)	TOR4A (ENSOTSG00005042780)	ENSOTSG00005042781	SLC25A1 (ENSOTSG00005042782)	PI4KA (ENSOTSG00005042790)	ENSOTSG00005042795	cyhr1 (ENSOTSG00005042797)	ENSOTSG00005042798	xpo7 (ENSOTSG00005042804) #19	pbdc1 (ENSOTSG00005043805)	dmtn (ENSOTSG00005043806) #22	spp1 (ENSOTSG00005043807)	ENSOTSG00005043809	vldlr (ENSOTSG00005043824)	KCNV2 (ENSOTSG00005046704)	ENSOTSG00005046706	ENSOTSG00005046707	ENSOTSG00005046709	hspb9l (ENSOTSG00005046711)	ENSOTSG00005046712	ENSOTSG00005046730	ENSOTSG00005046776	dusp4 (ENSOTSG00005046777)	ENSOTSG00005046778	ENSOTSG00005046779	zgc:86764 (ENSOTSG00005046780)
Coho salmon	MODERN SPECIES	26	ptpn11a (ENSOKIG00005002033)	ENSOKIG00005002245	pla2g3 (ENSOKIG00005002265)	ENSOKIG00005002378	pitpnb (ENSOKIG00005002395)	NAA25 (ENSOKIG00005002458)	tor4aa (ENSOKIG00005002592)	zgc:56235 (ENSOKIG00005002604)	SLC25A1 (ENSOKIG00005002637)	pi4kaa (ENSOKIG00005002855)	HIC2 (ENSOKIG00005003299)	ube2l3a (ENSOKIG00005003307)	ckmt2a (ENSOKIG00005003317)	RASGRF2 (ENSOKIG00005003338)	pbdc1 (ENSOKIG00005003485)	ENSOKIG00005003498 #22	ppp3ccb (ENSOKIG00005003539) ##35	spp1 (ENSOKIG00005003610)	ENSOKIG00005003626	vldlr (ENSOKIG00005004075)	KCNV2 (ENSOKIG00005013491)	ENSOKIG00005013497	hspb9l (ENSOKIG00005013506)	ENSOKIG00005013607	ENSOKIG00005014620	dusp4 (ENSOKIG00005014631)	ENSOKIG00005014650	ENSOKIG00005014667	zgc:86764 (ENSOKIG00005014693)	slc26a1 (ENSOKIG00005014762)	ENSOKIG00005014770
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000018459	ENSOMYG00000018738	tor4aa (ENSOMYG00000018751)	ENSOMYG00000018757	ENSOMYG00000070169	ENSOMYG00000018770	ENSOMYG00000042313	pi4kaa (ENSOMYG00000018843)	ENSOMYG00000054995	ENSOMYG00000019004	ENSOMYG00000019023	ENSOMYG00000019051	ENSOMYG00000019617	xpo7 (ENSOMYG00000021515) #19	ENSOMYG00000021586	dmtn (ENSOMYG00000069825) #22	ENSOMYG00000021617 ##35	ENSOMYG00000073848	spp1 (ENSOMYG00000021668)	ENSOMYG00000021684	vldlr (ENSOMYG00000022122)	ENSOMYG00000025435	ENSOMYG00000025501	ENSOMYG00000025515	ENSOMYG00000026060	ENSOMYG00000053420	dusp4 (ENSOMYG00000026384)	ENSOMYG00000026392	ENSOMYG00000026405	zgc:86764 (ENSOMYG00000026430)	slc26a1 (ENSOMYG00000026463)
Huchen	MODERN SPECIES	1662																dmtn (ENSHHUG00000044154) #22	ppp3ccb (ENSHHUG00000044179) ##35	spp1 (ENSHHUG00000044710)	ENSHHUG00000044713	vldlr (ENSHHUG00000044732)	KCNV2 (ENSHHUG00000046133)	ENSHHUG00000046136	hspb9l (ENSHHUG00000046155)	ENSHHUG00000046158	ENSHHUG00000046160
Northern pike	MODERN SPECIES	13	SLC25A1 (ENSELUG00000002451)	pi4kaa (ENSELUG00000002430)	HIC2 (ENSELUG00000002408)	ENSELUG00000002405	ENSELUG00000030963	ENSELUG00000025888	ENSELUG00000002402	ENSELUG00000028537	ENSELUG00000002399	UBE2L5 (ENSELUG00000002395)	ENSELUG00000029352	ckmt2a (ENSELUG00000002389)	RASGRF2 (ENSELUG00000002372)	xpo7 (ENSELUG00000002329) #19	pbdc1 (ENSELUG00000002300)	dmtn (ENSELUG00000002290) #22	ENSELUG00000002280	spp1 (ENSELUG00000002267)	ENSELUG00000002261	vldlr (ENSELUG00000002236)	KCNV2 (ENSELUG00000002219)	pum3 (ENSELUG00000002215)	ENSELUG00000001380	hspb9l (ENSELUG00000002193)	ENSELUG00000002184	dusp4 (ENSELUG00000002163)	ENSELUG00000002156	zgc:86764 (ENSELUG00000029876)	slc26a1 (ENSELUG00000002144)	ENSELUG00000034698	rbp4l (ENSELUG00000002138)
Osteoglossiformes	ANCESTRAL SPECIES	188	ENSGT00940000160296.j #28	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00940000155782.f	ENSGT00390000009948.d	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.b.e	ENSGT00940000157038.a.b	ENSGT00940000164699	ENSGT00940000155847	ENSGT00940000156168.B #17	ENSGT00940000159868.b #18	ENSGT00940000153139.B.a #19	ENSGT00390000016333	ENSGT00950000182850.a.b.b.b.b #22	ENSGT00940000156239.f	ENSGT00940000164380.b
Asian bonytongue	MODERN SPECIES	21	kctd9b (ENSSFOG00015027589)	actr1b (ENSSFOG00015004696)	marchf5l (ENSSFOG00015004657)	npy8ar (ENSSFOG00015004598)	cox5ba (ENSSFOG00015004590)	DBNL (ENSSFOG00015004574)	ENSSFOG00015026787	tcf7l1a (ENSSFOG00015004425)	ENSSFOG00015004391	ENSSFOG00015025286	ENSSFOG00015004317	dusp11 (ENSSFOG00015025576)	GFRA2 (ENSSFOG00015015943) #17	xpo7 (ENSSFOG00015015859) #19	pbdc1 (ENSSFOG00015015830)	dmtn (ENSSFOG00015015782) #22	adam9 (ENSSFOG00015015739)	ENSSFOG00015015665	ENSSFOG00015015649	ppp3ccb (ENSSFOG00015015580) ##35	TCIM (ENSSFOG00015015559)	ENSSFOG00015025014	ENSSFOG00015015440	sfrp1b (ENSSFOG00015015426)	ENSSFOG00015015387	zdhhc12b (ENSSFOG00015015374)	uap1l1 (ENSSFOG00015015353)	slc25a25b (ENSSFOG00015030265)	NAIF1 (ENSSFOG00015015307)	eeig1b (ENSSFOG00015025518)	ENSSFOG00015015295
P. kingsleyae	MODERN SPECIES	9	ENSPKIG00000018721	PTBP3 (ENSPKIG00000018677)	hsdl2 (ENSPKIG00000018620)	ENSPKIG00000018582	ythdc1 (ENSPKIG00000018497)	snx30 (ENSPKIG00000018432)	inip (ENSPKIG00000018405)	ENSPKIG00000018390	ENSPKIG00000018367	ENSPKIG00000018347	ENSPKIG00000018334	GFRA2 (ENSPKIG00000018311) #17	ENSPKIG00000018292 #18	xpo7 (ENSPKIG00000018175) #19	pbdc1 (ENSPKIG00000018127)	dmtn (ENSPKIG00000018115) #22	adam9 (ENSPKIG00000018077)	ENSPKIG00000018049	GNAZ (ENSPKIG00000018034)	sppl3 (ENSPKIG00000018000)	sdf2l1 (ENSPKIG00000017963)	ube2l3b (ENSPKIG00000017942)	hic2 (ENSPKIG00000017929)	pi4kaa (ENSPKIG00000017878)	ENSPKIG00000017835	SLC25A1 (ENSPKIG00000017818)	zgc:56235 (ENSPKIG00000017776)	glis3 (ENSPKIG00000017730)	rfx3 (ENSPKIG00000017641)	FOXN4 (ENSPKIG00000017607)	UNG (ENSPKIG00000017575)
Spotted gar	MODERN SPECIES	647	RHOBTB2 (ENSLOCG00000014937)	egr3 (ENSLOCG00000014936)	BIN3 (ENSLOCG00000014932)	kansl3 (ENSLOCG00000014926)	npffr1l1 (ENSLOCG00000014924)	bmp1b (ENSLOCG00000014917) #30	atp6v1b2 (ENSLOCG00000014912) #15	LZTS1 (ENSLOCG00000014910) #16	gfra2a (ENSLOCG00000014902) #17	DOK2 (ENSLOCG00000014900) #18	kazald3 (ENSLOCG00000014896)	xpo7 (ENSLOCG00000014884) #19	pbdc1 (ENSLOCG00000014881)	npm2b (ENSLOCG00000014878) #20	fgf17 (ENSLOCG00000014874)	dmtn (ENSLOCG00000014865) #22	ENSLOCG00000014859	naa10 (ENSLOCG00000014858)	arhgap4a (ENSLOCG00000014854)	ENSLOCG00000014852	l1cama (ENSLOCG00000014844)	ENSLOCG00000014841	ENSLOCG00000014839	ENSLOCG00000014837	ENSLOCG00000014835	HUWE1 (ENSLOCG00000014797)	ENSLOCG00000014794	ENSLOCG00000014792	FAM120C (ENSLOCG00000014788)	WNK3 (ENSLOCG00000014785)	ENSLOCG00000014784
Reedfish	MODERN SPECIES		ENSECRG00000007248	ENSECRG00000007240	stc1l (ENSECRG00000007229)	ido1 (ENSECRG00000007213)	ENSECRG00000007199	atp6v1b2 (ENSECRG00000007165) #15	LZTS1 (ENSECRG00000007151) #16	ENSECRG00000007146	gfra2a (ENSECRG00000007137) #17	ENSECRG00000007131	DOK2 (ENSECRG00000007126) #18	kazald3 (ENSECRG00000007104)	xpo7 (ENSECRG00000007066) #19	pbdc1 (ENSECRG00000007046)	fgf17 (ENSECRG00000007030)	dmtn (ENSECRG00000006995) #22	RIBC2 (ENSECRG00000006979)	ENSECRG00000005175	ENSECRG00000004863	ENSECRG00000004819	ENSECRG00000004806	yif1b (ENSECRG00000004798)	ENSECRG00000004783	ENSECRG00000004767	ENSECRG00000004756	ENSECRG00000004728	prdm4 (ENSECRG00000004698)	ASCL4 (ENSECRG00000004689)	ENSECRG00000004676	ENSECRG00000004662	ENSECRG00000004640
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.b #22
Lamprey	MODERN SPECIES	1395																ENSPMAG00000002578 #22
Hagfish	MODERN SPECIES	797								ENSEBUG00000000319	adrb1 (ENSEBUG00000006164)	ENSEBUG00000015249	ENSEBUG00000014474	fhip2a (ENSEBUG00000007241) ##23	FNTA (ENSEBUG00000016337)	ENSEBUG00000007420	ENSEBUG00000011677 ##22	ENSEBUG00000001164 #22	ENSEBUG00000007146
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a ##22
Gnathostomata	ANCESTRAL SPECIES	624																ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318
Elephant shark	MODERN SPECIES	1651				CTSO (ENSCMIG00000010354)	tdo2b (ENSCMIG00000010344)	ASIC5 (ENSCMIG00000010339)	gucy1b1 (ENSCMIG00000010317)	gucy1a1 (ENSCMIG00000010302)	ENSCMIG00000010300	ENSCMIG00000010297	npy2rl (ENSCMIG00000010294)	rbm46 (ENSCMIG00000010286)	ENSCMIG00000010278	ENSCMIG00000010269	ENSCMIG00000010267	ABLIM2 (ENSCMIG00000010230) ##22	AFAP1 (ENSCMIG00000010206)	KLHL2 (ENSCMIG00000010188)	SORCS2 (ENSCMIG00000010164)	grpel1 (ENSCMIG00000010157)	tada2b (ENSCMIG00000010154)	SMIM31 (ENSCMIG00000010152)	ENSCMIG00000010151	ENSCMIG00000010146	ENSCMIG00000010140
Euteleostomi	ANCESTRAL SPECIES		ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000165038	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c	ENSGT01030000235227
Actinopterygii	ANCESTRAL SPECIES	20	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778.a	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.a.a	ENSGT00940000162580	ENSGT00940000165038	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c	ENSGT01030000235227
Neopterygii	ANCESTRAL SPECIES	35	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000164407.a.a	ENSGT00940000159778.a	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.a.a	ENSGT00940000162580	ENSGT00940000165038	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c
Osteoglossocephalai	ANCESTRAL SPECIES	200	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00530000063074.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594	ENSGT00390000011576.a	ENSGT00940000153763.b	ENSGT00940000155279.C.b	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Osteoglossiformes	ANCESTRAL SPECIES	89	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00530000063074.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594	ENSGT00390000011576.a	ENSGT00940000153763.b	ENSGT00940000155279.C.b	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000264788	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928.c.c	ENSGT00940000166785	ENSGT00940000153713.B.c
P. kingsleyae	MODERN SPECIES	214	ENSPKIG00000015789	intu (ENSPKIG00000015816)	ino80b (ENSPKIG00000015858)	AADAT (ENSPKIG00000015890)	mfap3l (ENSPKIG00000015936)	ENSPKIG00000015951	CLCN3 (ENSPKIG00000016012)	ANK2 (ENSPKIG00000016128)	ENSPKIG00000016197	camk2d1 (ENSPKIG00000016240)	ARSJ (ENSPKIG00000016348)	mad2l1 (ENSPKIG00000016368)	pde5ab (ENSPKIG00000016389)	zcchc4 (ENSPKIG00000016454)	ENSPKIG00000016513	ABLIM2 (ENSPKIG00000016529) ##22	AFAP1 (ENSPKIG00000016612)	SORCS2 (ENSPKIG00000016962)	tada2b (ENSPKIG00000017247)	ccdc96 (ENSPKIG00000017269)
Asian bonytongue	MODERN SPECIES		ENSSFOG00015029111	ENSSFOG00015021359	trmt10b (ENSSFOG00015033105)	intu (ENSSFOG00015021338)	ino80b (ENSSFOG00015021329)	AADAT (ENSSFOG00015021299)	mfap3l (ENSSFOG00015028214)	CLCN3 (ENSSFOG00015021235)	ANK2 (ENSSFOG00015021177)	ENSSFOG00015021102	ARSJ (ENSSFOG00015032330)	mad2l1 (ENSSFOG00015021070)	pde5ab (ENSSFOG00015020998)	ENSSFOG00015030389	zcchc4 (ENSSFOG00015020941)	ABLIM2 (ENSSFOG00015020774) ##22	AFAP1 (ENSSFOG00015020672)	SORCS2 (ENSSFOG00015020627)	grpel1 (ENSSFOG00015020614)	tada2b (ENSSFOG00015027209)	ccdc96 (ENSSFOG00015031962)	ENSSFOG00015005560	ENSSFOG00015027749	TBC1D14 (ENSSFOG00015020556)	kiaa0232 (ENSSFOG00015020528)	ENSSFOG00015020451	dysf (ENSSFOG00015020375)	cyp26b1 (ENSSFOG00015020343)	ENSSFOG00015020333	exoc6b (ENSSFOG00015020269)	cct7 (ENSSFOG00015020230)
Clupeocephala	ANCESTRAL SPECIES	179					ENSGT00940000162580.b.a	ENSGT00940000165038.b	ENSGT00940000156391.c	ENSGT00950000183001.b.b.b	ENSGT00390000000645	ENSGT00940000159769.b	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b	ENSGT01100000263563.c.b	ENSGT00940000174987
Euteleosteomorpha	ANCESTRAL SPECIES	78	ENSGT00940000161027.b	ENSGT00940000165255.A	ENSGT00940000155078.a.a	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT00940000156819.b	ENSGT01100000263495.E	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b	ENSGT01100000263563.c.b	ENSGT00940000174987
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	57	ENSGT00940000155078.a.a	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT00940000156819.b	ENSGT01100000263495.E	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a.b ##22	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.cb	ENSGT01100000263563.c.b	ENSGT00390000015965
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	336	ENSGT00940000155293.b	ENSGT00940000161027.b.f.a	ENSGT00940000155078.a.a.a	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00390000004124.j.j	ENSGT00940000156996.f.a.b.b	ENSGT00940000156819.b.g	ENSGT00940000162989.f.b	ENSGT01100000263495.E.m.b.b	ENSGT00940000155279.C.a.a.m.a.a.a	ENSGT00940000155150.a.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c	ENSGT00950000182850.a.b.a.a.a.a ##22	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT01100000263482.F	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a	ENSGT01100000263563.c.b.c	ENSGT00390000015965	ENSGT00390000000214.a.b.k.a	ENSGT00940000157221.x.i.b
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000155078.a.a.a	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00390000004124.j.j	ENSGT00940000156996.f.a.b.b	ENSGT00940000156819.b.g	ENSGT00940000162989.f.b	ENSGT01100000263495.E.m.b.b	ENSGT00940000155279.C.a.a.m.a.a.a	ENSGT00940000155150.a.b	ENSGT00940000155279.C.a.a.m.a.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c	ENSGT00950000182850.a.b.a.a.a.a ##22	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a	ENSGT01100000263563.c.b.c	ENSGT00390000015965	ENSGT00390000000214.a.b.k.a	ENSGT00940000157221.x.i.b	ENSGT00940000153648.b.n	ENSGT00990000208579.b	ENSGT00980000201372
Salmo	ANCESTRAL SPECIES	18	ENSGT00940000166499.c	ENSGT00940000155293.b	ENSGT00940000161027.b.f.a	ENSGT00940000155078.a.a.a	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00390000004124.j.j	ENSGT00940000156996.f.a.b.b	ENSGT00940000156819.b.g	ENSGT00940000162989.f.b	ENSGT01100000263495.E.m.b.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c	ENSGT00950000182850.a.b.a.a.a.a ##22	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000018895.a.m.a	ENSGT00390000005197.a.cb.e.a	ENSGT01100000263563.c.b.c	ENSGT00390000015965	ENSGT00390000000214.a.b.k.a	ENSGT00990000211390	ENSGT00940000157221.x.i.b	ENSGT00940000165320
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000090367	ENSSSAG00000078233	ENSSSAG00000120059	cd248a (ENSSSAG00000109080)	ENSSSAG00000102952	ENSSSAG00000078192	ENSSSAG00000101548	znf16l (ENSSSAG00000078183)	ENSSSAG00000097190	ENSSSAG00000069256	ENSSSAG00000100753	ENSSSAG00000068126	ENSSSAG00000081908	pde5ab (ENSSSAG00000061144)	zcchc4 (ENSSSAG00000087227)	ABLIM2 (ENSSSAG00000060413) ##22	ENSSSAG00000083801	AFAP1 (ENSSSAG00000060218)	SORCS2 (ENSSSAG00000049497)	GRPEL1 (ENSSSAG00000049102)	tada2b (ENSSSAG00000086629)	ENSSSAG00000049074	TBC1D14 (ENSSSAG00000043970)	KIAA0232 (ENSSSAG00000043817)	ENSSSAG00000092477	ENSSSAG00000043781	ENSSSAG00000083639	rbpjb (ENSSSAG00000041441)	CCKAR (ENSSSAG00000088509)	tbc1d19 (ENSSSAG00000041126)	STIM2 (ENSSSAG00000003054)
River trout	MODERN SPECIES	35	ENSSTUG00000037755	ENSSTUG00000037736	ENSSTUG00000037712	PELI3 (ENSSTUG00000037703)	RCE1 (ENSSTUG00000037662)	cd248a (ENSSTUG00000037625)	ENSSTUG00000037613	ENSSTUG00000037548	znf16l (ENSSTUG00000037541)	ENSSTUG00000034215	ENSSTUG00000032175	ARSJ (ENSSTUG00000032060)	mad2l1 (ENSSTUG00000032049)	pde5ab (ENSSTUG00000031450)	zcchc4 (ENSSTUG00000031388)	ABLIM2 (ENSSTUG00000030413) ##22	AFAP1 (ENSSTUG00000030368)	ENSSTUG00000030361	SORCS2 (ENSSTUG00000029672)	grpel1 (ENSSTUG00000029638)	tada2b (ENSSTUG00000029631)	ENSSTUG00000029612	TBC1D14 (ENSSTUG00000027130)	kiaa0232 (ENSSTUG00000027072)	ENSSTUG00000027066	rbpjb (ENSSTUG00000026772)	CCKAR (ENSSTUG00000050267)	tbc1d19 (ENSSTUG00000050255)	STIM2 (ENSSTUG00000050244)	ENSSTUG00000050236	PCDH7 (ENSSTUG00000050235)
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000161027.b.f.a	ENSGT00940000155078.a.a.a	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00390000004124.j.j	ENSGT00940000156996.f.a.b.b	ENSGT00940000156819.b.g	ENSGT00940000162989.f.b	ENSGT01100000263495.E.m.b.b	ENSGT00940000155279.C.a.a.m.a.a.a	ENSGT00940000155150.a.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c	ENSGT00950000182850.a.b.a.a.a.a ##22	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a	ENSGT01100000263563.c.b.c	ENSGT00390000015965	ENSGT00390000000214.a.b.k.a	ENSGT01000000220453.A	ENSGT00940000157221.x.i.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.a.a.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.a
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000002907	ENSOMYG00000003003	ENSOMYG00000003060	ENSOMYG00000065876	ENSOMYG00000003099	cd248a (ENSOMYG00000003125)	SSTR1B (ENSOMYG00000003136)	chi (ENSOMYG00000003189)	znf16l (ENSOMYG00000003282)	ENSOMYG00000003978	ENSOMYG00000005554	ENSOMYG00000052362	ENSOMYG00000071329	pde5ab (ENSOMYG00000007783)	ENSOMYG00000009006	ABLIM2 (ENSOMYG00000009018) ##22	AFAP1 (ENSOMYG00000076559)	SORCS2 (ENSOMYG00000009185)	grpel1 (ENSOMYG00000059030)	tada2b (ENSOMYG00000009315)	ENSOMYG00000076871	TBC1D14 (ENSOMYG00000009692)	kiaa0232 (ENSOMYG00000010844)	ENSOMYG00000010848	rbpjb (ENSOMYG00000010928)	CCKAR (ENSOMYG00000011008)	tbc1d19 (ENSOMYG00000011076)	STIM2 (ENSOMYG00000011343)	ENSOMYG00000072475	ENSOMYG00000011485	PCDH7 (ENSOMYG00000011494)
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000161027.b.f.a	ENSGT00940000155078.a.a.a	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00390000004124.j.j	ENSGT00940000156996.f.a.b.b	ENSGT00940000156819.b.g	ENSGT00940000162989.f.b	ENSGT01100000263495.E.m.b.b	ENSGT00940000155279.C.a.a.m.a.a.a	ENSGT00940000155150.a.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c	ENSGT00950000182850.a.b.a.a.a.a ##22	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a	ENSGT01100000263563.c.b.c	ENSGT00390000015965	ENSGT00390000000214.a.b.k.a	ENSGT01000000220453.A	ENSGT00940000157221.x.i.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.a.a.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.a
Coho salmon	MODERN SPECIES	7	taf6l (ENSOKIG00005038056)	ENSOKIG00005038195	ENSOKIG00005038229	ENSOKIG00005038322	ENSOKIG00005038364	PELI3 (ENSOKIG00005038447)	RCE1 (ENSOKIG00005038476)	cd248a (ENSOKIG00005038552)	ENSOKIG00005038578	ENSOKIG00005038607	znf16l (ENSOKIG00005038813)	ENSOKIG00005039598	ARSJ (ENSOKIG00005040154)	MAD2L1 (ENSOKIG00005040164)	pde5ab (ENSOKIG00005040433)	ABLIM2 (ENSOKIG00005043756) ##22	zcchc4 (ENSOKIG00005043797)	AFAP1 (ENSOKIG00005043840)	SORCS2 (ENSOKIG00005043962)	GRPEL1 (ENSOKIG00005044114)	tada2b (ENSOKIG00005044130)	TBC1D14 (ENSOKIG00005044210)	KIAA0232 (ENSOKIG00005044699)	rbpjb (ENSOKIG00005044732)	CCKAR (ENSOKIG00005044891)	tbc1d19 (ENSOKIG00005044905)	STIM2 (ENSOKIG00005044980)	ENSOKIG00005045149	ENSOKIG00005045153	ENSOKIG00005045158	ENSOKIG00005045163
Chinook salmon	MODERN SPECIES	1	mta2 (ENSOTSG00005017375)	taf6l (ENSOTSG00005017433)	ENSOTSG00005017440	ENSOTSG00005017471	PELI3 (ENSOTSG00005017502)	RCE1 (ENSOTSG00005017504)	cd248a (ENSOTSG00005017507)	ENSOTSG00005017508	ENSOTSG00005017510	znf16l (ENSOTSG00005017512)	ANK2 (ENSOTSG00005017559)	camk2d1 (ENSOTSG00005032430)	mad2l1 (ENSOTSG00005032959)	pde5ab (ENSOTSG00005032979)	zcchc4 (ENSOTSG00005033936)	ABLIM2 (ENSOTSG00005033937) ##22	AFAP1 (ENSOTSG00005033946)	SORCS2 (ENSOTSG00005033948)	grpel1 (ENSOTSG00005033954)	tada2b (ENSOTSG00005033957)	ENSOTSG00005033959	TBC1D14 (ENSOTSG00005033971)	ENSOTSG00005000732	kiaa0232 (ENSOTSG00005001061)	rbpjb (ENSOTSG00005001100)	CCKAR (ENSOTSG00005001452)	tbc1d19 (ENSOTSG00005001461)	STIM2 (ENSOTSG00005001632)	ENSOTSG00005001636	PCDH7 (ENSOTSG00005001637)	ENSOTSG00005001641
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.a.b ##22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	6049															ENSHHUG00000009486 ##22	ENSHHUG00000009501 ##22
Huchen	MODERN SPECIES	67	ENSHHUG00000023303	ENSHHUG00000023295	ENSHHUG00000023214	PELI3 (ENSHHUG00000023209)	RCE1 (ENSHHUG00000023189)	cd248a (ENSHHUG00000023183)	ENSHHUG00000023179	ENSHHUG00000023164	znf16l (ENSHHUG00000023156)	ENSHHUG00000022463	camk2d1 (ENSHHUG00000020480)	ARSJ (ENSHHUG00000020454)	mad2l1 (ENSHHUG00000020429)	pde5ab (ENSHHUG00000019939)	zcchc4 (ENSHHUG00000019901)	ABLIM2 (ENSHHUG00000019886) ##22	ENSHHUG00000019866	ENSHHUG00000019864
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.a.b ##22
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000161027.b.f.b	ENSGT00940000155669.nc	ENSGT00940000155078.a.a.b	ENSGT00950000183050.b.b.b.a.b.b.f	ENSGT00390000004124.j.i	ENSGT00940000156996.f.a.b.a	ENSGT00940000156819.b.h	ENSGT01100000263495.E.m.b.a	ENSGT00940000155279.C.a.a.m.a.b	ENSGT00940000159769.a.a.w.a	ENSGT00940000159954.b	ENSGT00940000153395.a.j	ENSGT00940000155475.h.j	ENSGT00940000168370	ENSGT00390000012556.d	ENSGT00950000182850.a.b.a.a.a.b ##22	ENSGT00950000183067.a.a.h	ENSGT01030000234563.b.a.a.l.a	ENSGT00390000005589.a.a.w	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g.a	ENSGT00940000162710.c.a.c.a	ENSGT00940000157667.d.c	ENSGT00940000158481.d.i	ENSGT00390000017249.e	ENSGT00940000156431.u	ENSGT00390000006293.t.b	ENSGT00940000156938.e.g.b	ENSGT00940000163421.a.d.a.a.f.a.a.b	ENSGT00940000166375.h
River trout	MODERN SPECIES	38	taf6l (ENSSTUG00000009079)	ENSSTUG00000008832	ENSSTUG00000008804	ENSSTUG00000008795	ENSSTUG00000008792	PELI3 (ENSSTUG00000008783)	RCE1 (ENSSTUG00000008756)	cd248a (ENSSTUG00000008736)	ENSSTUG00000008727	znf16l (ENSSTUG00000008718)	ENSSTUG00000006503	ARSJ (ENSSTUG00000006489)	mad2l1 (ENSSTUG00000006479)	pde5ab (ENSSTUG00000005963)	ENSSTUG00000005950	ABLIM2 (ENSSTUG00000005851) ##22	ENSSTUG00000005845	AFAP1 (ENSSTUG00000005834)	SORCS2 (ENSSTUG00000005480)	grpel1 (ENSSTUG00000005439)	tada2b (ENSSTUG00000005427)	ccdc96 (ENSSTUG00000005424)	ENSSTUG00000005406	ENSSTUG00000005370	ENSSTUG00000005355	TBC1D14 (ENSSTUG00000003515)	kiaa0232 (ENSSTUG00000003427)	S100P (ENSSTUG00000003417)	ENSSTUG00000003406	MAN2B2 (ENSSTUG00000003373)	ENSSTUG00000003357
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000063371	peli3 (ENSSSAG00000039604)	ENSSSAG00000098780	cd248a (ENSSSAG00000039247)	ENSSSAG00000039187	znf16l (ENSSSAG00000119114)	ENSSSAG00000008316	ENSSSAG00000007877	ENSSSAG00000007815	ENSSSAG00000007809	pde5ab (ENSSSAG00000007143)	ENSSSAG00000007102	ENSSSAG00000108529	ENSSSAG00000113257	ENSSSAG00000007088	ABLIM2 (ENSSSAG00000007010) ##22	ENSSSAG00000119722	ENSSSAG00000084726	AFAP1 (ENSSSAG00000006919)	ENSSSAG00000113173	SORCS2 (ENSSSAG00000006057)	grpel1 (ENSSSAG00000116289)	tada2b (ENSSSAG00000119094)	ENSSSAG00000089298	ccdc96 (ENSSSAG00000005913)	ENSSSAG00000059975	ENSSSAG00000062059	ENSSSAG00000005906	ENSSSAG00000014842	ENSSSAG00000003774	tbc1d14 (ENSSSAG00000003821)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.a.b ##22
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000015711	ENSOMYG00000015732	ENSOMYG00000015815	ENSOMYG00000015822	cd248a (ENSOMYG00000015834)	ENSOMYG00000015841	znf16l (ENSOMYG00000015852)	ENSOMYG00000016144	ENSOMYG00000070669	ENSOMYG00000022114	ENSOMYG00000022248	ENSOMYG00000022268	pde5ab (ENSOMYG00000022278)	ENSOMYG00000022315	ENSOMYG00000022330	ABLIM2 (ENSOMYG00000022345) ##22	ENSOMYG00000052232	AFAP1 (ENSOMYG00000009076)	ENSOMYG00000056156	SORCS2 (ENSOMYG00000022367)	grpel1 (ENSOMYG00000022403)	tada2b (ENSOMYG00000022418)	ccdc96 (ENSOMYG00000022426)	ENSOMYG00000022432	ENSOMYG00000022449	ENSOMYG00000067246	TBC1D14 (ENSOMYG00000022537)	KIAA0232 (ENSOMYG00000022849)	S100P (ENSOMYG00000022859)	ENSOMYG00000022870	MAN2B2 (ENSOMYG00000023014)
Northern pike	MODERN SPECIES	23	cd248a (ENSELUG00000012328)	ENSELUG00000012320	ENSELUG00000025924	ENSELUG00000012262	ENSELUG00000012204	ENSELUG00000031992	ENSELUG00000033501	znf16l (ENSELUG00000012156)	ANK2 (ENSELUG00000012054)	ENSELUG00000012007	ARSJ (ENSELUG00000011975)	mad2l1 (ENSELUG00000011950)	pde5ab (ENSELUG00000011916)	ENSELUG00000025483	zcchc4 (ENSELUG00000011763)	ABLIM2 (ENSELUG00000011712) ##22	AFAP1 (ENSELUG00000011506)	ENSELUG00000028395	hsd11b1la (ENSELUG00000011379)	SORCS2 (ENSELUG00000011332)	grpel1 (ENSELUG00000011256)	tada2b (ENSELUG00000011240)	ccdc96 (ENSELUG00000031533)	TBC1D14 (ENSELUG00000011194)	kiaa0232 (ENSELUG00000011174)	s100p (ENSELUG00000011155)	ENSELUG00000011060	MAN2B2 (ENSELUG00000011118)	smim20 (ENSELUG00000031844)	rbpjb (ENSELUG00000011029)	CCKAR (ENSELUG00000001082)
Protacanthopterygii	ANCESTRAL SPECIES	57	ENSGT00940000160057	ENSGT00940000165255.A	ENSGT00940000155078.a.a	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT00940000156819.b	ENSGT01100000263495.E	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a.b ##22	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.cb
Salmoninae	ANCESTRAL SPECIES	1328																ENSGT00950000182850.a.b.a.a.b ##22	ENSGT00950000183067.a.a.h	ENSGT01030000234563.b.a.a.l.b
Huchen	MODERN SPECIES	6049																ENSHHUG00000009486 ##22	ENSHHUG00000009501 ##22
Salmoninae_a	ANCESTRAL SPECIES	101	ENSGT00940000161027.b.f.b	ENSGT00940000155669.nc	ENSGT00940000155078.a.a.b	ENSGT00950000183050.b.b.b.a.b.b.f	ENSGT00390000004124.j.i	ENSGT00940000156996.f.a.b.a	ENSGT00940000156819.b.h	ENSGT01100000263495.E.m.b.a	ENSGT00940000155279.C.a.a.m.b	ENSGT00940000159769.a.a.w.a	ENSGT00940000159954.b	ENSGT00940000153395.a.j	ENSGT00940000155475.h.j	ENSGT00940000168370	ENSGT00390000012556.d	ENSGT00950000182850.a.b.a.a.b ##22	ENSGT00950000183067.a.a.h	ENSGT01030000234563.b.a.a.l.a	ENSGT00390000005589.a.a.w	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00940000162710.c.a.c.a	ENSGT00940000163421.a.d.a.b.a	ENSGT00940000163421.a.d.a.b.b	ENSGT00940000159150.ab	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000161027.b.f.b	ENSGT00940000155669.nc	ENSGT00940000155078.a.a.b	ENSGT00950000183050.b.b.b.a.b.b.f	ENSGT00390000004124.j.i	ENSGT00940000156996.f.a.b.a	ENSGT00940000156819.b.h	ENSGT01100000263495.E.m.b.a	ENSGT00940000155279.C.a.a.m.b	ENSGT00940000159769.a.a.w.a	ENSGT00940000159954.b.a	ENSGT00940000153395.a.j	ENSGT00940000155475.h.j	ENSGT00940000168370	ENSGT00390000012556.d	ENSGT00950000182850.a.b.a.a.b ##22	ENSGT00950000183067.a.a.h	ENSGT01030000234563.b.a.a.l.a	ENSGT00390000005589.a.a.w	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00940000162710.c.a.c.a	ENSGT00940000163421.a.d.a.b.a	ENSGT00940000163421.a.d.a.b.b.b	ENSGT00940000159150.ab.e	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000161027.b.f.b	ENSGT00940000165255.A	ENSGT00940000155078.a.a.b	ENSGT00950000183050.b.b.b.a.b.b.f	ENSGT00390000004124.j.i	ENSGT00940000156996.f.a.b.a	ENSGT00940000156819.b.h	ENSGT01100000263495.E.m.b.a	ENSGT00940000155279.C.a.a.m.b	ENSGT00940000159769.a.a.w.a	ENSGT00940000159954.b.a	ENSGT00940000153395.a.j	ENSGT00940000155475.h.j	ENSGT00940000168370	ENSGT00390000012556.d	ENSGT00950000182850.a.b.a.a.b ##22	ENSGT00950000183067.a.a.h	ENSGT01030000234563.b.a.a.l.a	ENSGT00390000005589.a.a.w	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00940000162710.c.a.c.a	ENSGT00940000163421.a.d.a.b.b.b	ENSGT00940000159150.ab.e	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT01030000234638.b.a.b.c
Coho salmon	MODERN SPECIES	29	PELI3 (ENSOKIG00005016641)	RCE1 (ENSOKIG00005016650)	ENSOKIG00005016677	cd248a (ENSOKIG00005016682)	ENSOKIG00005016688	ENSOKIG00005016695	znf16l (ENSOKIG00005016705)	ANK2 (ENSOKIG00005017078)	ENSOKIG00005024277	ARSJ (ENSOKIG00005024380)	mad2l1 (ENSOKIG00005024388)	pde5ab (ENSOKIG00005024427)	ENSOKIG00005024853	ENSOKIG00005024867	ENSOKIG00005024923	ABLIM2 (ENSOKIG00005024933) ##22	AFAP1 (ENSOKIG00005024960)	SORCS2 (ENSOKIG00005025020)	grpel1 (ENSOKIG00005025162)	tada2b (ENSOKIG00005025191)	ccdc96 (ENSOKIG00005025208)	ENSOKIG00005025215	ENSOKIG00005025275	ENSOKIG00005025498	TBC1D14 (ENSOKIG00005025524)	kiaa0232 (ENSOKIG00005025740)	S100P (ENSOKIG00005025743)	ENSOKIG00005025758	MAN2B2 (ENSOKIG00005025814)	ENSOKIG00005026694	smim20 (ENSOKIG00005026709)
Acanthomorphata	ANCESTRAL SPECIES	100								ENSGT00940000155279.C.a.b	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640
Cod	MODERN SPECIES	8	ENSGMOG00000036870	tmem88b (ENSGMOG00000004009)	KDM6B (ENSGMOG00000003968)	ENSGMOG00000007920	ENSGMOG00000035526	wrap53 (ENSGMOG00000011868)	ENSGMOG00000011874	ENSGMOG00000034471	ENSGMOG00000022845	ENSGMOG00000014650	ENSGMOG00000003248	ENSGMOG00000008197	pde5ab (ENSGMOG00000002770)	ENSGMOG00000027107	zcchc4 (ENSGMOG00000006485)	ABLIM2 (ENSGMOG00000009526) ##22	AFAP1 (ENSGMOG00000009885)	SORCS2 (ENSGMOG00000001580)	GRPEL1 (ENSGMOG00000019350)	tada2b (ENSGMOG00000019352)	ENSGMOG00000019355	pop7 (ENSGMOG00000005955)	epoa (ENSGMOG00000019363)	ENSGMOG00000032441	ufsp1 (ENSGMOG00000020121)	ENSGMOG00000037220	ENSGMOG00000019364	ENSGMOG00000027342	tmem256 (ENSGMOG00000018676)	tmem102 (ENSGMOG00000022209)	fgf11a (ENSGMOG00000005813)
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640
Pinecone sodierfish	MODERN SPECIES	9													ENSMMDG00005014572	ENSMMDG00005014570	zcchc4 (ENSMMDG00005014558)	ABLIM2 (ENSMMDG00005014543) ##22	AFAP1 (ENSMMDG00005014490)	SORCS2 (ENSMMDG00005014482)	grpel1 (ENSMMDG00005014481)	tada2b (ENSMMDG00005014477)	ccdc96 (ENSMMDG00005014476)	ENSMMDG00005014470	ENSMMDG00005014461	pde5ab (ENSMMDG00005014454)	mad2l1 (ENSMMDG00005014448)	ARSJ (ENSMMDG00005014446)	ENSMMDG00005013370	ENSMMDG00005013333	ENSMMDG00005013328	ENSMMDG00005013315	ENSMMDG00005013307
Percomorphaceae	ANCESTRAL SPECIES	18									ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640
Tiger tail seahorse	MODERN SPECIES	263	ENSHCOG00000005431 ##23	CPZ (ENSHCOG00000005408)	ENSHCOG00000005401	ADRA2C (ENSHCOG00000005397)	DOK7 (ENSHCOG00000000167)	HGFAC (ENSHCOG00000005385)	ENSHCOG00000000637	ENSHCOG00000005343	msantd1 (ENSHCOG00000000870)	dtx4a (ENSHCOG00000000681)	coro1b (ENSHCOG00000005289)	osbp (ENSHCOG00000005270)	ENSHCOG00000005103	cldnd1a (ENSHCOG00000005095)	zcchc4 (ENSHCOG00000005083)	ABLIM2 (ENSHCOG00000005021) ##22	AFAP1 (ENSHCOG00000005000)	senp3b (ENSHCOG00000004967)	eif4a1a (ENSHCOG00000000636)	sox19b (ENSHCOG00000004919)	mpdu1b (ENSHCOG00000004916)	mpdu1b (ENSHCOG00000004882)	ENSHCOG00000004865	MBLAC1 (ENSHCOG00000004858)	tm4sf21b (ENSHCOG00000004842)	gal3st4 (ENSHCOG00000004730)	trappc14 (ENSHCOG00000004707)	zanl (ENSHCOG00000004690)	ENSHCOG00000004613	SLC2A4 (ENSHCOG00000004608)	ENSHCOG00000004582
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000155397.a.b	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978	ENSGT00940000174504.A	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978	ENSGT00940000174504.A	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978	ENSGT00940000174504.A	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000163911.a.a.b.a.a.a.b	ENSGT01030000234978	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867
Zig-zag eel	MODERN SPECIES	9	slc1a1 (ENSMAMG00000002306)	ENSMAMG00000002355	tspan5a (ENSMAMG00000002417)	ENSMAMG00000002471	frem1a (ENSMAMG00000002508)	ENSMAMG00000027140	ENSMAMG00000002904	ENSMAMG00000002915	ENSMAMG00000002963	ENSMAMG00000003089	ENSMAMG00000003180	ENSMAMG00000003272	pde5ab (ENSMAMG00000003200)	zcchc4 (ENSMAMG00000003297)	ENSMAMG00000003336	ABLIM2 (ENSMAMG00000003355) ##22	AFAP1 (ENSMAMG00000003432)	ENSMAMG00000003482	SORCS2 (ENSMAMG00000003507)	grpel1 (ENSMAMG00000003658)	tada2b (ENSMAMG00000003674)	ccdc96 (ENSMAMG00000003712)	ENSMAMG00000025953	ENSMAMG00000024332	ENSMAMG00000003751	TBC1D14 (ENSMAMG00000003758)	kiaa0232 (ENSMAMG00000003775)	S100P (ENSMAMG00000026011)	ENSMAMG00000025378	ENSMAMG00000028030	ENSMAMG00000003823
Anabantoidei	ANCESTRAL SPECIES	22	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000177569.b	ENSGT00940000163911.a.a.b.a.a.a.b	ENSGT01030000234978	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a
Climbing perch	MODERN SPECIES	9	ENSATEG00000000970	tspan5a (ENSATEG00000000935)	ENSATEG00000029290	frem1a (ENSATEG00000000746)	ENSATEG00000000719	ENSATEG00000000657	ENSATEG00000000649	ENSATEG00000000560	ANK2 (ENSATEG00000028978)	camk2d1 (ENSATEG00000000178)	ARSJ (ENSATEG00000000161)	mad2l1 (ENSATEG00000025736)	pde5ab (ENSATEG00000000026)	ENSATEG00000020711	ENSATEG00000020701	ENSATEG00000020630 ##22	AFAP1 (ENSATEG00000020578)	ENSATEG00000020524	ENSATEG00000020507	ENSATEG00000020461	SORCS2 (ENSATEG00000020390)	grpel1 (ENSATEG00000029995)	tada2b (ENSATEG00000028980)	ccdc96 (ENSATEG00000020333)	ENSATEG00000020313	ENSATEG00000020297	ENSATEG00000029963	ENSATEG00000020260	TBC1D14 (ENSATEG00000020180)	kiaa0232 (ENSATEG00000020142)	S100P (ENSATEG00000020133)
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000011290	ENSBSLG00000011287	ENSBSLG00000011284	ENSBSLG00000011280	ENSBSLG00000011276	ENSBSLG00000011274	ENSBSLG00000011269	ENSBSLG00000011263	ENSBSLG00000011260	ENSBSLG00000011236	ENSBSLG00000011227	ENSBSLG00000011197	ENSBSLG00000011069	ENSBSLG00000011039	zcchc4 (ENSBSLG00000010935)	ABLIM2 (ENSBSLG00000010692) ##22	AFAP1 (ENSBSLG00000010169)	ENSBSLG00000010155	ENSBSLG00000010150	ENSBSLG00000010010	ENSBSLG00000009375	ENSBSLG00000009321	ENSBSLG00000009311	ENSBSLG00000009296	ENSBSLG00000009292	ENSBSLG00000009253	ENSBSLG00000009160	sowahcb (ENSBSLG00000009134)	ENSBSLG00000009106	ENSBSLG00000009097	cep70 (ENSBSLG00000009074)
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01040000242820	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867
Carangaria_A	ANCESTRAL SPECIES	41	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978	ENSGT00940000174504.A
Barramundi perch	MODERN SPECIES	51								ANK2 (ENSLCAG00010014785)	ENSLCAG00010014515	ENSLCAG00010012628	ARSJ (ENSLCAG00010011924)	mad2l1 (ENSLCAG00010011920)	pde5ab (ENSLCAG00010011494)	zcchc4 (ENSLCAG00010011426)	ENSLCAG00010011422	ABLIM2 (ENSLCAG00010011389) ##22	AFAP1 (ENSLCAG00010011356)	ENSLCAG00010011349	ENSLCAG00010011347	grpel1 (ENSLCAG00010011343)	SORCS2 (ENSLCAG00010010507)	ENSLCAG00010010346	ENSLCAG00010010342	tada2b (ENSLCAG00010010338)	ENSLCAG00010010332	ENSLCAG00010010331	TBC1D14 (ENSLCAG00010010324)	kiaa0232 (ENSLCAG00010010319)	S100P (ENSLCAG00010010315)	ENSLCAG00010010313	SLC29A2 (ENSLCAG00010010306)
Seriola	ANCESTRAL SPECIES	64	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000159842.pc.a.a.b.a.b	ENSGT00950000183067.a.a	ENSGT00940000158194	ENSGT00940000169954	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT00940000167160	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258	ENSGT00940000164485.a.a	ENSGT00940000164485.a.b	ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e
Greater amberjack	MODERN SPECIES	49	ENSSDUG00000002856	ENSSDUG00000002881	frem1a (ENSSDUG00000002894)	ENSSDUG00000002958	PAQR9 (ENSSDUG00000002972)	ACO1 (ENSSDUG00000002984)	ENSSDUG00000003039	ENSSDUG00000003091	ENSSDUG00000003159	ENSSDUG00000003180	ARSJ (ENSSDUG00000003283)	mad2l1 (ENSSDUG00000003297)	pde5ab (ENSSDUG00000003319)	zcchc4 (ENSSDUG00000003383)	ENSSDUG00000003436	ABLIM2 (ENSSDUG00000003451) ##22	ENSSDUG00000003542	AFAP1 (ENSSDUG00000003568)	ENSSDUG00000003618	ing2 (ENSSDUG00000003634)	ENSSDUG00000003652	ENSSDUG00000003672	slx1b (ENSSDUG00000003681)	zgc:112271 (ENSSDUG00000003689)	ENSSDUG00000003715	pygmb (ENSSDUG00000003844)	sf1 (ENSSDUG00000003903)	rbm4.1 (ENSSDUG00000003925)	rbm4.2 (ENSSDUG00000003936)	ENSSDUG00000003945	map4k2 (ENSSDUG00000003970)
Yellowtail amberjack	MODERN SPECIES	3056	slc1a1 (ENSSLDG00000014207)	RAP1GDS1 (ENSSLDG00000014143)	ENSSLDG00000014092	ENSSLDG00000014071	frem1a (ENSSLDG00000014018)	ENSSLDG00000013997	PAQR9 (ENSSLDG00000013992)	ACO1 (ENSSLDG00000013952)	ANK2 (ENSSLDG00000013812)	camk2d1 (ENSSLDG00000013740)	ARSJ (ENSSLDG00000013725)	mad2l1 (ENSSLDG00000013709)	pde5ab (ENSSLDG00000013675)	ENSSLDG00000013657	zcchc4 (ENSSLDG00000013617)	ABLIM2 (ENSSLDG00000013587) ##22	ENSSLDG00000013572	AFAP1 (ENSSLDG00000013501)	ecsit (ENSSLDG00000013450)	ENSSLDG00000013408	rtn3 (ENSSLDG00000013371)	men1 (ENSSLDG00000013252)	map4k2 (ENSSLDG00000013179)	rbm4.2 (ENSSLDG00000013157)	rbm4.1 (ENSSLDG00000013147)	sf1 (ENSSLDG00000013075)	pygmb (ENSSLDG00000013013)	ENSSLDG00000012988	zgc:112271 (ENSSLDG00000012972)	slx1b (ENSSLDG00000012957)	ENSSLDG00000012939
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01040000242820	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640	ENSGT00390000012424.a
Turbot	MODERN SPECIES	16	ENSSMAG00000018348	tspan5a (ENSSMAG00000018453)	ENSSMAG00000018526	frem1a (ENSSMAG00000018555)	ENSSMAG00000018871	ENSSMAG00000018903	ENSSMAG00000018908	ENSSMAG00000005321	ENSSMAG00000005288	ENSSMAG00000005212	ENSSMAG00000005194	ENSSMAG00000005179	pde5ab (ENSSMAG00000004989)	ENSSMAG00000004971	ENSSMAG00000004944	ABLIM2 (ENSSMAG00000004778) ##22	AFAP1 (ENSSMAG00000004705)	ENSSMAG00000004681	SORCS2 (ENSSMAG00000004493)	grpel1 (ENSSMAG00000037054)	tada2b (ENSSMAG00000013588)	ccdc96 (ENSSMAG00000013576)	ENSSMAG00000025442	TBC1D14 (ENSSMAG00000013479)	kiaa0232 (ENSSMAG00000013437)	S100P (ENSSMAG00000013420)	S100P (ENSSMAG00000013426)	ENSSMAG00000013315	ENSSMAG00000013290	ENSSMAG00000013238	ENSSMAG00000013147
Tongue sole	MODERN SPECIES		zgc:77880 (ENSCSEG00000005054)	ENSCSEG00000005048	pip4p1b (ENSCSEG00000005042)	ENSCSEG00000005021	ENSCSEG00000005015	dysf (ENSCSEG00000004989)	cyp26b1 (ENSCSEG00000004973)	camk2d1 (ENSCSEG00000004948)	rpl17 (ENSCSEG00000004760)	ARSJ (ENSCSEG00000004731)	mad2l1 (ENSCSEG00000004726)	pde5ab (ENSCSEG00000004689)	ENSCSEG00000004679	ENSCSEG00000004675	zcchc4 (ENSCSEG00000004671)	ABLIM2 (ENSCSEG00000004654) ##22	AFAP1 (ENSCSEG00000004634)	STIM2 (ENSCSEG00000004617)	tbc1d19 (ENSCSEG00000004592)	CCKAR (ENSCSEG00000004584)	RBPJ (ENSCSEG00000004581)	smim20 (ENSCSEG00000004579)	ENSCSEG00000004575	ENSCSEG00000004573	sat2a.2 (ENSCSEG00000004567)	tnfsf12 (ENSCSEG00000004560)	ENSCSEG00000004557	CHD3 (ENSCSEG00000004489)	naa38 (ENSCSEG00000004480)	dnajc3b (ENSCSEG00000004470)	cldn15a (ENSCSEG00000004464)
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640
Tetraodontidae	ANCESTRAL SPECIES	108												ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640
Fugu	MODERN SPECIES	20	cd59 (ENSTRUG00000022452)	ENSTRUG00000031847	eef1b2 (ENSTRUG00000011667)	arl11 (ENSTRUG00000011561)	cavin2b (ENSTRUG00000011526)	vps16 (ENSTRUG00000011267)	rgn (ENSTRUG00000011178)	ENSTRUG00000010475	ENSTRUG00000027980	ARSJ (ENSTRUG00000010396)	mad2l1 (ENSTRUG00000023674)	pde5ab (ENSTRUG00000010171)	ENSTRUG00000031468	zcchc4 (ENSTRUG00000010046)	ENSTRUG00000026830	ABLIM2 (ENSTRUG00000009795) ##22	AFAP1 (ENSTRUG00000009616)	SORCS2 (ENSTRUG00000009401)	ENSTRUG00000031866	grpel1 (ENSTRUG00000009322)	tada2b (ENSTRUG00000032822)	ENSTRUG00000009255	ENSTRUG00000029174	TBC1D14 (ENSTRUG00000020505)	kiaa0232 (ENSTRUG00000009220)	SLC29A2 (ENSTRUG00000008954)	ENSTRUG00000008801	rela (ENSTRUG00000008758)	zgc:63470 (ENSTRUG00000008748)	ANK2 (ENSTRUG00000008279)	ENSTRUG00000007602
Tetraodon	MODERN SPECIES	26	noc4l (ENSTNIG00000003941)	nek7 (ENSTNIG00000003934)	ENSTNIG00000003929	ENSTNIG00000003928	ENSTNIG00000003927	ENSTNIG00000003920	gss (ENSTNIG00000003919)	ENSTNIG00000001636	ENSTNIG00000003918	ENSTNIG00000003912	PALS1 (ENSTNIG00000003911)	ENSTNIG00000000947	ENSTNIG00000003906	zbtb49 (ENSTNIG00000003905)	ENSTNIG00000001060	ABLIM2 (ENSTNIG00000003898) ##22	ENSTNIG00000003895	gripap1 (ENSTNIG00000003886)	ENSTNIG00000003884	ENSTNIG00000003883	mbnl1 (ENSTNIG00000003878)	BACH2 (ENSTNIG00000003864)	ENSTNIG00000003863	ENSTNIG00000000081	ENSTNIG00000003859	myh7l (ENSTNIG00000003860)	PFKFB2 (ENSTNIG00000003857)	ENSTNIG00000003856	SKI (ENSTNIG00000001491)	det1 (ENSTNIG00000003849)	ENSTNIG00000003841
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640
Ballan wrasse	MODERN SPECIES	202						ENSLBEG00000012328	ENSLBEG00000012348	ENSLBEG00000012364	ANK2 (ENSLBEG00000012446)	camk2d1 (ENSLBEG00000012749)	ARSJ (ENSLBEG00000013201)	mad2l1 (ENSLBEG00000013236)	pde5ab (ENSLBEG00000013283)	zcchc4 (ENSLBEG00000013353)	ENSLBEG00000013399	ABLIM2 (ENSLBEG00000013428) ##22	AFAP1 (ENSLBEG00000013494)	RAP1GDS1 (ENSLBEG00000013550)	tspan5a (ENSLBEG00000013625)	frem1a (ENSLBEG00000013674)	ENSLBEG00000013803	PAQR9 (ENSLBEG00000013829)	ACO1 (ENSLBEG00000013866)	slc1a1 (ENSLBEG00000013947)	ENSLBEG00000014003	trmt10a (ENSLBEG00000014032)	ENSLBEG00000014050	hacd4 (ENSLBEG00000014068)	ENSLBEG00000014253	mllt3 (ENSLBEG00000014586)	H2AZ1 (ENSLBEG00000014657)
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867	ENSGT00390000011640
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.C	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010005459	ENSSAUG00010005450	ENSSAUG00010005443	PAQR9 (ENSSAUG00010005442)	ACO1 (ENSSAUG00010005355)	ENSSAUG00010024423	ANK2 (ENSSAUG00010023331)	ENSSAUG00010023269	ENSSAUG00010023190	ARSJ (ENSSAUG00010023187)	ENSSAUG00010023186	mad2l1 (ENSSAUG00010023185)	pde5ab (ENSSAUG00010022024)	ENSSAUG00010021990	zcchc4 (ENSSAUG00010021986)	ABLIM2 (ENSSAUG00010021184) ##22	AFAP1 (ENSSAUG00010021162)	ENSSAUG00010021161	ENSSAUG00010021160	senp3b (ENSSAUG00010021149)	eif4a1a (ENSSAUG00010021113)	sox19b (ENSSAUG00010021105)	mpdu1b (ENSSAUG00010021104)	ENSSAUG00010021103	MBLAC1 (ENSSAUG00010021101)	tm4sf21b (ENSSAUG00010021099)	gal3st4 (ENSSAUG00010021098)	trappc14 (ENSSAUG00010021096)	zanl (ENSSAUG00010021065)	ENSSAUG00010021062	serpine1 (ENSSAUG00010021060)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000266235	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000159867
European seabass	MODERN SPECIES	16	slc1a1 (ENSDLAG00005033872)	ENSDLAG00005006523	tspan5a (ENSDLAG00005006709)	ENSDLAG00005006736	frem1a (ENSDLAG00005006751)	ENSDLAG00005031223	ENSDLAG00005006897	ENSDLAG00005007733	camk2d1 (ENSDLAG00005020120)	ENSDLAG00005020179	ARSJ (ENSDLAG00005020204)	mad2l1 (ENSDLAG00005028659)	pde5ab (ENSDLAG00005020232)	zcchc4 (ENSDLAG00005020651)	ENSDLAG00005020669	ABLIM2 (ENSDLAG00005020689) ##22	AFAP1 (ENSDLAG00005020819)	SORCS2 (ENSDLAG00005020908)	grpel1 (ENSDLAG00005028693)	tada2b (ENSDLAG00005034948)	ccdc96 (ENSDLAG00005022484)	ENSDLAG00005026719	ENSDLAG00005022490	ENSDLAG00005022497	TBC1D14 (ENSDLAG00005022527)	kiaa0232 (ENSDLAG00005023090)	S100P (ENSDLAG00005023088)	ENSDLAG00005023096	ENSDLAG00005023099	ENSDLAG00005023106	ENSDLAG00005023126
Large yellow croaker	MODERN SPECIES	485	ing2 (ENSLCRG00005008410)	ENSLCRG00005008420	ENSLCRG00005008423	rwdd (ENSLCRG00005008424)	ENSLCRG00005008427	ENSLCRG00005008499	ENSLCRG00005009193	ENSLCRG00005009256	ENSLCRG00005009307	mllt3 (ENSLCRG00005009330)	ENSLCRG00005009458	hacd4 (ENSLCRG00005010480)	C4orf54 (ENSLCRG00005010483)	zcchc4 (ENSLCRG00005010485)	ENSLCRG00005010519	ABLIM2 (ENSLCRG00005010545) ##22	AFAP1 (ENSLCRG00005010556)	SORCS2 (ENSLCRG00005010899)	grpel1 (ENSLCRG00005013780)	tada2b (ENSLCRG00005013781)	ccdc96 (ENSLCRG00005013782)	ENSLCRG00005013784	TBC1D14 (ENSLCRG00005013912)	kiaa0232 (ENSLCRG00005014793)	ENSLCRG00005014795	S100P (ENSLCRG00005014798)	SLC29A2 (ENSLCRG00005014811)	ENSLCRG00005014889	rela (ENSLCRG00005015346)	zgc:63470 (ENSLCRG00005015354)	drap1 (ENSLCRG00005015357)
Perciformes	ANCESTRAL SPECIES	19	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a.j
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a
Pike perch	MODERN SPECIES	150									ENSSLUG00000013073	ENSSLUG00000012720	ENSSLUG00000009271	ARSJ (ENSSLUG00000009000)	mad2l1 (ENSSLUG00000008991)	pde5ab (ENSSLUG00000006137)	zcchc4 (ENSSLUG00000005986)	ABLIM2 (ENSSLUG00000005646) ##22	AFAP1 (ENSSLUG00000005580)	C4orf54 (ENSSLUG00000005560)	hacd4 (ENSSLUG00000005554)	ENSSLUG00000005478	mllt3 (ENSSLUG00000005429)	H2AZ1 (ENSSLUG00000005390)	ENSSLUG00000005378	ENSSLUG00000005366
Channel bull blenny	MODERN SPECIES	9	slc1a1 (ENSCGOG00000024346)	RAP1GDS1 (ENSCGOG00000024365)	tspan5a (ENSCGOG00000024396)	ENSCGOG00000024403	frem1a (ENSCGOG00000024405)	ENSCGOG00000024411	ENSCGOG00000024412	ENSCGOG00000024413	ACO1 (ENSCGOG00000024452)	ANK2 (ENSCGOG00000024701)	ENSCGOG00000024748	ARSJ (ENSCGOG00000024752)	mad2l1 (ENSCGOG00000024753)	pde5ab (ENSCGOG00000024754)	zcchc4 (ENSCGOG00000024755)	ABLIM2 (ENSCGOG00000024756) ##22	AFAP1 (ENSCGOG00000024757)	ENSCGOG00000024758	ENSCGOG00000024759	cldnd1a (ENSCGOG00000024760)	ACY3 (ENSCGOG00000024761)	osbp (ENSCGOG00000024762)	coro1b (ENSCGOG00000024763)	dtx4a (ENSCGOG00000006418)	msantd1 (ENSCGOG00000006424)	ENSCGOG00000006425	HGFAC (ENSCGOG00000006430)	DOK7 (ENSCGOG00000006456)	ADRA2C (ENSCGOG00000006461)	HMX1 (ENSCGOG00000006465)	ENSCGOG00000006467
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a.j
Stickleback	MODERN SPECIES	417														pde5ab (ENSGACG00000000974)	zcchc4 (ENSGACG00000000969)	ABLIM2 (ENSGACG00000000966) ##22	AFAP1 (ENSGACG00000000961)	tada2b (ENSGACG00000000960)	grpel1 (ENSGACG00000000958)	SORCS2 (ENSGACG00000000941)	frem1a (ENSGACG00000000932)	tspan5a (ENSGACG00000000929)	RAP1GDS1 (ENSGACG00000000917)	slc1a1 (ENSGACG00000000901)	ENSGACG00000000900	trmt10a (ENSGACG00000000892)	hacd4 (ENSGACG00000000890)	ENSGACG00000000877	mllt3 (ENSGACG00000000874)	H2AZ1 (ENSGACG00000000870)	ENSGACG00000000867
Lumpfish	MODERN SPECIES	9	slc1a1 (ENSCLMG00005022956)	RAP1GDS1 (ENSCLMG00005022967)	ENSCLMG00005022993	ENSCLMG00005022994	frem1a (ENSCLMG00005004935)	ENSCLMG00005004941	PAQR9 (ENSCLMG00005004943)	ACO1 (ENSCLMG00005004953)	ANK2 (ENSCLMG00005005554)	ENSCLMG00005005601	ARSJ (ENSCLMG00005005666)	mad2l1 (ENSCLMG00005005688)	pde5ab (ENSCLMG00005005718)	zcchc4 (ENSCLMG00005010832)	ENSCLMG00005010835	ABLIM2 (ENSCLMG00005010843) ##22	AFAP1 (ENSCLMG00005012202)	ccdc96 (ENSCLMG00005012209)	tada2b (ENSCLMG00005012212)	grpel1 (ENSCLMG00005012214)	ENSCLMG00005012215
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.B	ENSGT00940000171869.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT01100000263983	ENSGT00940000162871	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a
Cichlidae	ANCESTRAL SPECIES	31	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000171869.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871.h	ENSGT01100000263983	ENSGT00940000162871.g	ENSGT00940000177059	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00390000018549	ENSGT00940000157250	ENSGT01100000263482.F.k	ENSGT01100000263482.F.l	ENSGT00940000171869.A	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000158971	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00390000015545	ENSGT00940000158194	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT00940000167160	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258	ENSGT00940000164485.a.a	ENSGT00940000164485.a.b	ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e
Nile tilapia	MODERN SPECIES	15	ENSONIG00000036736	ENSONIG00000038751	ENSONIG00000030427	ENSONIG00000036651	ENSONIG00000041596	ccdc96 (ENSONIG00000041207)	tada2b (ENSONIG00000034695)	grpel1 (ENSONIG00000029457)	SORCS2 (ENSONIG00000001509)	ENSONIG00000005473	arsj (ENSONIG00000005471)	mad2l1 (ENSONIG00000005468)	pde5ab (ENSONIG00000005462)	ENSONIG00000005461	zcchc4 (ENSONIG00000005459)	ABLIM2 (ENSONIG00000005456) ##22	AFAP1 (ENSONIG00000005448)	rwdd (ENSONIG00000015703)	ing2 (ENSONIG00000015708)	ENSONIG00000015709	ENSONIG00000015713	slx1b (ENSONIG00000015715)	zgc:112271 (ENSONIG00000027381)	ENSONIG00000015717	pygmb (ENSONIG00000015719)	sf1 (ENSONIG00000015728)	rbm4.1 (ENSONIG00000015730)	rbm4.2 (ENSONIG00000032681)	ENSONIG00000039105	map4k2 (ENSONIG00000003805)	men1 (ENSONIG00000003810)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	81										ENSGT00940000158971	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a
Lyretail cichlid	MODERN SPECIES	550											ARSJ (ENSNBRG00000000877)	mad2l1 (ENSNBRG00000000851)	pde5ab (ENSNBRG00000000777)	ENSNBRG00000000755	zcchc4 (ENSNBRG00000000710)	ABLIM2 (ENSNBRG00000000664) ##22
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.c ##22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.c ##22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.c ##22
Zebra mbuna	MODERN SPECIES	227																ABLIM2 (ENSMZEG00005011809) ##22	AFAP1 (ENSMZEG00005011777)	fam113 (ENSMZEG00005011761)	kif2c (ENSMZEG00005011693)
Haplochromini	ANCESTRAL SPECIES	102										ENSGT00940000158971	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a.d ##22	ENSGT00950000183067.a.a
Burton s mouthbrooder	MODERN SPECIES	939													pde5ab (ENSHBUG00000005962)	ENSHBUG00000005971	zcchc4 (ENSHBUG00000006047)	ABLIM2 (ENSHBUG00000006083) ##22
Haplochromini_A	ANCESTRAL SPECIES	110									ENSGT00940000158971	ENSGT00940000159954	ENSGT00940000153395.a.e	ENSGT00940000153395.a.f	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a.d ##22	ENSGT00950000183067.a.a
P. nyererei	MODERN SPECIES	704													pde5ab (ENSPNYG00000002131)	ENSPNYG00000002101	zcchc4 (ENSPNYG00000002085)	ABLIM2 (ENSPNYG00000001965) ##22	AFAP1 (ENSPNYG00000001918)
Haplochromini_B	ANCESTRAL SPECIES	128								ENSGT00940000158971	ENSGT00940000159954	ENSGT00940000153395.a.e	ENSGT00940000171869.A.h	ENSGT00940000153395.a.f	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a.d ##22	ENSGT00950000183067.a.a
Eastern happy	MODERN SPECIES	15	ENSACLG00000006254	ENSACLG00000006245	ENSACLG00000006239	ing2 (ENSACLG00000006232)	rwdd (ENSACLG00000006200)	ENSACLG00000006178	ENSACLG00000006168	ENSACLG00000006084	ARSJ (ENSACLG00000006048)	mad2l1 (ENSACLG00000005723)	ENSACLG00000005713	mad2l1 (ENSACLG00000005690)	pde5ab (ENSACLG00000005554)	ENSACLG00000005546	zcchc4 (ENSACLG00000005538)	ABLIM2 (ENSACLG00000004972) ##22	AFAP1 (ENSACLG00000004930)	ENSACLG00000004890	kif2c (ENSACLG00000004831)
Zebra mbuna	MODERN SPECIES	1106	ENSMZEG00005009059	ENSMZEG00005009049	ing2 (ENSMZEG00005009039)	rwdd (ENSMZEG00005009024)	mad2l1 (ENSMZEG00005008962)	ENSMZEG00005008944	ccdc96 (ENSMZEG00005008931)	tada2b (ENSMZEG00005008903)	grpel1 (ENSMZEG00005008885)	ENSMZEG00005008878	SORCS2 (ENSMZEG00005008816)	mad2l1 (ENSMZEG00005008797)	pde5ab (ENSMZEG00005008758)	ENSMZEG00005008738	zcchc4 (ENSMZEG00005008724)	ENSMZEG00005008709 ##22	ENSMZEG00005008662	ENSMZEG00005008610	rela (ENSMZEG00005008549)	zgc:63470 (ENSMZEG00005008532)	drap1 (ENSMZEG00005008517)	MAP3K11 (ENSMZEG00005008508)	ENSMZEG00005008498	ENSMZEG00005008482	NRXN2 (ENSMZEG00005008393)	ENSMZEG00005008357	RASGRP2 (ENSMZEG00005008308)	ENSMZEG00005008276	ENSMZEG00005008269	ENSMZEG00005008254	ENSMZEG00005008226
Midas cichlid	MODERN SPECIES	1824												ENSACIG00000012719	mad2l1 (ENSACIG00000012709)	pde5ab (ENSACIG00000012649)	zcchc4 (ENSACIG00000012574)	ABLIM2 (ENSACIG00000012527) ##22	AFAP1 (ENSACIG00000012422)	SORCS2 (ENSACIG00000012327)	grpel1 (ENSACIG00000012282)	tada2b (ENSACIG00000012268)	ccdc96 (ENSACIG00000012259)	ENSACIG00000012247	GRK7 (ENSACIG00000012233)	rnf7 (ENSACIG00000012221)	ENSACIG00000012204	ENSACIG00000012169	ENSACIG00000012159	ENSACIG00000012136	RASA2 (ENSACIG00000012064)	ENSACIG00000012059	ENSACIG00000012005
Pomacentridae	ANCESTRAL SPECIES	127	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00730000111645.a	ENSGT00940000155279.C.a.a	ENSGT00940000159769.a.a.g.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978.a.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F
Bicolor damselfish	MODERN SPECIES	765												mad2l1 (ENSSPAG00000011404)	pde5ab (ENSSPAG00000011294)	ENSSPAG00000011255	zcchc4 (ENSSPAG00000011232)	ABLIM2 (ENSSPAG00000011026) ##22	AFAP1 (ENSSPAG00000010990)
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00730000111645.a	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978.a.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000171869.B	ENSGT00940000171869.A	ENSGT00940000157250.g	ENSGT00940000157250.h	ENSGT00390000018549	ENSGT00940000162871.j
Amphiprion	ANCESTRAL SPECIES	82	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00730000111645.a	ENSGT00940000181321	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978.a.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A
Clown anemonefish	MODERN SPECIES	1987																ABLIM2 (ENSAOCG00000019984) ##22
Orange clownfish	MODERN SPECIES	15	RAP1GDS1 (ENSAPEG00000014708)	slc1a1 (ENSAPEG00000014778)	ENSAPEG00000014841	trmt10a (ENSAPEG00000014878)	ENSAPEG00000014895	C4orf54 (ENSAPEG00000014909)	ENSAPEG00000014935	ANK2 (ENSAPEG00000014987)	camk2d1 (ENSAPEG00000015153)	ARSJ (ENSAPEG00000015214)	mad2l1 (ENSAPEG00000015250)	pde5ab (ENSAPEG00000015273)	ENSAPEG00000015356	zcchc4 (ENSAPEG00000015422)	ENSAPEG00000015472	ABLIM2 (ENSAPEG00000015498) ##22	AFAP1 (ENSAPEG00000015549)	ENSAPEG00000015592	ENSAPEG00000015604	ENSAPEG00000015614	ENSAPEG00000015633	ENSAPEG00000015639	SORCS2 (ENSAPEG00000015665)	ENSAPEG00000015787	grpel1 (ENSAPEG00000015805)	tada2b (ENSAPEG00000015831)	ccdc96 (ENSAPEG00000015858)	ENSAPEG00000015881	ENSAPEG00000015901	ENSAPEG00000015915	ENSAPEG00000015919
Spiny chromis	MODERN SPECIES	832											ARSJ (ENSAPOG00000017107)	mad2l1 (ENSAPOG00000017138)	pde5ab (ENSAPOG00000017195)	ENSAPOG00000017225	zcchc4 (ENSAPOG00000001123)	ABLIM2 (ENSAPOG00000017329) ##22
Atherinomorphae	ANCESTRAL SPECIES	34	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234978.a.b	ENSGT00940000174504.A	ENSGT00940000163911.a.a.b.a.a.a.b	ENSGT00940000163911.a.a.a.s
Oryzias	ANCESTRAL SPECIES	53												ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000163911.a.a.b.a.a.a.b.b	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a.l	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a
Oryzias_b	ANCESTRAL SPECIES	37	ENSGT00530000062962.b.b	ENSGT00940000172047	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a.l	ENSGT00940000155279.C.a.a.k.a	ENSGT00940000155279.C.a.b.e.a
Javanese ricefish	MODERN SPECIES	9						slc1a1 (ENSOJAG00000022655)	RAP1GDS1 (ENSOJAG00000022683)	TSPAN5 (ENSOJAG00000022700)	ENSOJAG00000022714	ENSOJAG00000022745	PAQR9 (ENSOJAG00000022752)	AFAP1 (ENSOJAG00000022763)	mad2l1 (ENSOJAG00000022783)	pde5ab (ENSOJAG00000022845)	zcchc4 (ENSOJAG00000022997)	ABLIM2 (ENSOJAG00000023009) ##22	ARSJ (ENSOJAG00000023050)	camk2d1 (ENSOJAG00000023195)	ANK2 (ENSOJAG00000023500)	ENSOJAG00000023530	trmt10a (ENSOJAG00000023535)	ENSOJAG00000023536	hacd4 (ENSOJAG00000023540)	mllt3 (ENSOJAG00000023610)	H2AZ1 (ENSOJAG00000023617)	ENSOJAG00000023625	ENSOJAG00000023631	rwdd (ENSOJAG00000023638)	ing2 (ENSOJAG00000023641)	ENSOJAG00000023645	ENSOJAG00000023648
Indian medaka	MODERN SPECIES	19	hacd4 (ENSOMEG00000004757)	ENSOMEG00000004740	trmt10a (ENSOMEG00000004720)	spata6l (ENSOMEG00000004701)	slc1a1 (ENSOMEG00000004659)	RAP1GDS1 (ENSOMEG00000004595)	ENSOMEG00000004522	ENSOMEG00000004502	frem1a (ENSOMEG00000004492)	ENSOMEG00000004458	PAQR9 (ENSOMEG00000004455)	AFAP1 (ENSOMEG00000004442)	mad2l1 (ENSOMEG00000004375)	pde5ab (ENSOMEG00000004350)	zcchc4 (ENSOMEG00000004315)	ABLIM2 (ENSOMEG00000004271) ##22	ARSJ (ENSOMEG00000004257)	ENSOMEG00000004226	ENSOMEG00000004170	ENSOMEG00000004161	ENSOMEG00000004145	ENSOMEG00000004138	ENSOMEG00000004123	ENSOMEG00000004113	ENSOMEG00000004092	ENSOMEG00000004085	ENSOMEG00000004074	ENSOMEG00000004029	NRXN2 (ENSOMEG00000004004)	ENSOMEG00000003941	ENSOMEG00000003929
Oryzias_a	ANCESTRAL SPECIES	124												ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000163911.a.a.b.a.a.a.b.b	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a.l	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990
Japanese Medaka HdrR	MODERN SPECIES	9						ENSORLG00000027704	ENSORLG00000027111	ENSORLG00000024130	AFAP1 (ENSORLG00000020781)	mad2l1 (ENSORLG00000020784)	pde5ab (ENSORLG00000020785)	zcchc4 (ENSORLG00000019957)	ENSORLG00000026384	ENSORLG00000028204	ENSORLG00000023551	ABLIM2 (ENSORLG00000019949) ##22	ENSORLG00000019929	ENSORLG00000022505	ARSJ (ENSORLG00000024656)	ENSORLG00000030026	ENSORLG00000019918	ENSORLG00000010794	ANK2 (ENSORLG00000024491)	ENSORLG00000023218	ACO1 (ENSORLG00000020656)	ENSORLG00000022463	PAQR9 (ENSORLG00000030633)	ENSORLG00000022365	ENSORLG00000030033	frem1a (ENSORLG00000020663)	ENSORLG00000028709
Chinese medaka	MODERN SPECIES	788																ABLIM2 (ENSOSIG00000001600) ##22	ENSOSIG00000001672	ARSJ (ENSOSIG00000001696)
Cyprinodontiformes	ANCESTRAL SPECIES	29	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a
Aplocheiloidei	ANCESTRAL SPECIES	49	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954.f	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a
Mangrove rivulus	MODERN SPECIES	135	ENSKMAG00000015835	ENSKMAG00000015876	ENSKMAG00000015902	ENSKMAG00000015909	camk2d1 (ENSKMAG00000015956)	ARSJ (ENSKMAG00000016034)	ENSKMAG00000016042	ENSKMAG00000016050	ENSKMAG00000016059	mad2l1 (ENSKMAG00000016072)	pde5ab (ENSKMAG00000016117)	ENSKMAG00000016200	ENSKMAG00000016215	zcchc4 (ENSKMAG00000016236)	ENSKMAG00000016290	ABLIM2 (ENSKMAG00000016369) ##22	ENSKMAG00000016532	ENSKMAG00000016544	AFAP1 (ENSKMAG00000016590)	ENSKMAG00000016645	ENSKMAG00000016703	ENSKMAG00000016812	ENSKMAG00000016826	ENSKMAG00000016843	ENSKMAG00000016863	ENSKMAG00000016879	ENSKMAG00000016910	ENSKMAG00000016966	ENSKMAG00000017052	ENSKMAG00000017064	ENSKMAG00000017071
Turquoise killifish	MODERN SPECIES	1619		ACOX3 (ENSNFUG00015011539)	ENSNFUG00015011774	ENSNFUG00015011803	MTM1 (ENSNFUG00015011865)	mtmr1a (ENSNFUG00015012234)	ENSNFUG00015013446	ENSNFUG00015013457	ENSNFUG00015013459	sox19b (ENSNFUG00015013464)	MPDU1B (ENSNFUG00015013472)	MBLAC1 (ENSNFUG00015013478)	tm4sf21b (ENSNFUG00015013485)	GAL3ST4 (ENSNFUG00015013502)	zcchc4 (ENSNFUG00015013521)	ABLIM2 (ENSNFUG00015013596) ##22	ENSNFUG00015013759	AFAP1 (ENSNFUG00015013774)	ENSNFUG00015013806	ENSNFUG00015013821	DHRSX (ENSNFUG00015013828)	sowahcb (ENSNFUG00015013835)	adarb1a (ENSNFUG00015013852)	slx9 (ENSNFUG00015013889)	ENSNFUG00015009120	ENSNFUG00015009138	ENSNFUG00015009160	ENSNFUG00015009167	ENSNFUG00015009175	CD99 (ENSNFUG00015009200)	GYG2 (ENSNFUG00015009233)
Cyprinodontoidei	ANCESTRAL SPECIES	39	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.k.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a
Poeciliinae	ANCESTRAL SPECIES	59									ENSGT00940000168975	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990.q	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b
Platyfish	MODERN SPECIES	5	ENSXMAG00000029769	ENSXMAG00000021173	ENSXMAG00000025088	ENSXMAG00000026165	ENSXMAG00000029584	ENSXMAG00000026632	ENSXMAG00000022211	ENSXMAG00000027494	ANK2 (ENSXMAG00000007067)	ENSXMAG00000023501	camk2d1 (ENSXMAG00000028041)	ARSJ (ENSXMAG00000013200)	ENSXMAG00000022064	mad2l1 (ENSXMAG00000022079)	pde5ab (ENSXMAG00000019230)	ABLIM2 (ENSXMAG00000028425) ##22	AFAP1 (ENSXMAG00000009021)	ENSXMAG00000020214	ACO1 (ENSXMAG00000023603)	ENSXMAG00000023410	ENSXMAG00000023868	frem1a (ENSXMAG00000015784)	ENSXMAG00000024260	ENSXMAG00000024410	tspan5a (ENSXMAG00000024005)	RAP1GDS1 (ENSXMAG00000029432)
Poecilia	ANCESTRAL SPECIES	105							ENSGT00940000155279.C.a.a.l	ENSGT00770000121665.f	ENSGT00940000168975	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h.g	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990.q
Guppy	MODERN SPECIES	448	ENSPREG00000021426	RAP1GDS1 (ENSPREG00000021455)	slc1a1 (ENSPREG00000021518)	ENSPREG00000021539	ENSPREG00000021564	ENSPREG00000021584	ENSPREG00000021590	ENSPREG00000021603	ENSPREG00000021607	camk2d1 (ENSPREG00000021625)	ARSJ (ENSPREG00000021666)	mad2l1 (ENSPREG00000021671)	pde5ab (ENSPREG00000021683)	ENSPREG00000021696	zcchc4 (ENSPREG00000021704)	ABLIM2 (ENSPREG00000021724) ##22	ENSPREG00000021757	AFAP1 (ENSPREG00000021768)	ACO1 (ENSPREG00000021791)	PAQR9 (ENSPREG00000021816)	ENSPREG00000021823	ENSPREG00000021829	ENSPREG00000021842	ENSPREG00000021854	ENSPREG00000021859	ENSPREG00000021864	TBC1D14 (ENSPREG00000021882)	kiaa0232 (ENSPREG00000021904)	S100P (ENSPREG00000021912)	ENSPREG00000021921	ENSPREG00000021925
NAME_6	ANCESTRAL SPECIES	525													ENSGT00940000155475.h.g	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22
Amazon molly	MODERN SPECIES	512												RAP1GDS1 (ENSPFOG00000005005)	pde5ab (ENSPFOG00000004961)	ENSPFOG00000004956	zcchc4 (ENSPFOG00000004954)	ENSPFOG00000023857 ##22	ENSPFOG00000004941	pgap4 (ENSPFOG00000020080)	MAL (ENSPFOG00000004880)	lgalsla (ENSPFOG00000004842)	slc29a2 (ENSPFOG00000004682)	ENSPFOG00000004572	vps54 (ENSPFOG00000004273)	ugp2a (ENSPFOG00000004151)	mdh1aa (ENSPFOG00000004030)	otx2a (ENSPFOG00000004008)	ENSPFOG00000003959	b3gnt2a (ENSPFOG00000003950)	commd1 (ENSPFOG00000003910)	commd1 (ENSPFOG00000021967)	ENSPFOG00000003839
NAME_4	ANCESTRAL SPECIES	294						ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.k.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a
Sheepshead minnow	MODERN SPECIES	1236														ENSCVAG00000017550	zcchc4 (ENSCVAG00000017577)	ABLIM2 (ENSCVAG00000017605) ##22	AFAP1 (ENSCVAG00000000457)
Mummichog	MODERN SPECIES	2187						ENSFHEG00000005666	PAQR9 (ENSFHEG00000005637)	ACO1 (ENSFHEG00000005619)	ENSFHEG00000005568	camk2d1 (ENSFHEG00000005414)	ARSJ (ENSFHEG00000005333)	mad2l1 (ENSFHEG00000005319)	pde5ab (ENSFHEG00000005298)	zcchc4 (ENSFHEG00000005245)	ENSFHEG00000005226	ABLIM2 (ENSFHEG00000005197) ##22	AFAP1 (ENSFHEG00000005086)	MTMR1 (ENSFHEG00000005004)	mtm1 (ENSFHEG00000004972)	NAT16 (ENSFHEG00000004930)	acox3 (ENSFHEG00000004904)	znf16l (ENSFHEG00000004859)	ENSFHEG00000004851	ENSFHEG00000004838	ENSFHEG00000004812	ENSFHEG00000004735	ENSFHEG00000004718	ENSFHEG00000000603	ENSFHEG00000004671	ENSFHEG00000004661	ENSFHEG00000004648
Otomorpha	ANCESTRAL SPECIES	382										ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00530000063854	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549
Clupeiformes	ANCESTRAL SPECIES	282		ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00970000193685	ENSGT00940000158971	ENSGT00390000015545	ENSGT00950000185893	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063854	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A
Atlantic herring	MODERN SPECIES	9	ENSCHAG00000012953	FBXO24 (ENSCHAG00000012872)	ENSCHAG00000012857	ENSCHAG00000012850	ENSCHAG00000012808	ENSCHAG00000012556	rwdd (ENSCHAG00000012547)	ENSCHAG00000012531	acox3 (ENSCHAG00000011209)	HTRA3 (ENSCHAG00000011133)	ENSCHAG00000011125	ENSCHAG00000011076	mfsd8 (ENSCHAG00000010982)	ENSCHAG00000010972	zcchc4 (ENSCHAG00000010934)	ABLIM2 (ENSCHAG00000010663) ##22	ENSCHAG00000010642	AFAP1 (ENSCHAG00000010233)	SORCS2 (ENSCHAG00000006975)	ENSCHAG00000006891	grpel1 (ENSCHAG00000006856)	tada2b (ENSCHAG00000006716)	ccdc96 (ENSCHAG00000006706)	ENSCHAG00000006694	ENSCHAG00000006662	ENSCHAG00000006642	ENSCHAG00000006554	ENSCHAG00000006536	ENSCHAG00000006495	ENSCHAG00000006441	SEMA4F (ENSCHAG00000006416)
Denticle herring	MODERN SPECIES		TTC28 (ENSDCDG00000002870)	PITPNB (ENSDCDG00000003242)	MN1 (ENSDCDG00000003257)	ENSDCDG00000003264	ENSDCDG00000003269	zgc:153044 (ENSDCDG00000003275)	ENSDCDG00000003286	ADAM33 (ENSDCDG00000003407)	rwdd (ENSDCDG00000003758)	ENSDCDG00000003762	acox3 (ENSDCDG00000013987)	HTRA3 (ENSDCDG00000015661)	mfsd8 (ENSDCDG00000015890)	zcchc4 (ENSDCDG00000015900)	ENSDCDG00000015904	ABLIM2 (ENSDCDG00000015924) ##22	AFAP1 (ENSDCDG00000016790)	SORCS2 (ENSDCDG00000016911)	grpel1 (ENSDCDG00000017725)	tada2b (ENSDCDG00000017728)	MAP3K11 (ENSDCDG00000017731)	drap1 (ENSDCDG00000017735)	zgc:63470 (ENSDCDG00000017736)	rela (ENSDCDG00000017742)	PPP1CB (ENSDCDG00000017817)	SLC29A2 (ENSDCDG00000018886)	ALPK1 (ENSDCDG00000018922)	epdl1 (ENSDCDG00000018927)	PAQR9 (ENSDCDG00000018934)	pcolceb (ENSDCDG00000018935)	per1b (ENSDCDG00000018952)
Otophysi	ANCESTRAL SPECIES	48	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000165211	ENSGT00940000159866	ENSGT00940000165567	ENSGT00940000154035.a	ENSGT00940000161268	ENSGT00930000151033	ENSGT00940000159305	ENSGT00940000163587.a.b.b.e.b	ENSGT00940000175986	ENSGT00530000063854	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164184	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b	ENSGT00440000037780.a	ENSGT00940000154101.b.c.b	ENSGT00940000158806	ENSGT00940000158582	ENSGT00940000166891.a	ENSGT00940000166891.b	ENSGT00940000154653	ENSGT00390000014526	ENSGT00950000183208.B.f.a	ENSGT00950000182860.a.a.b.a.a.a.a
Characiphysae	ANCESTRAL SPECIES	93	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000165211	ENSGT00940000159866	ENSGT00940000154035.a	ENSGT00940000161268	ENSGT00930000151033	ENSGT00940000159305	ENSGT00940000163587.a.b.b.e.b	ENSGT00940000175986	ENSGT00530000063854	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164184	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b
Channel catfish	MODERN SPECIES	4	ctbp2a (ENSIPUG00000002494)	mmp21 (ENSIPUG00000002534)	UROS (ENSIPUG00000002557)	zgc:92749 (ENSIPUG00000002576)	zgc:86738 (ENSIPUG00000002583)	shbg (ENSIPUG00000002592)	ENSIPUG00000002604	Polr2a (ENSIPUG00000002613)	capg (ENSIPUG00000002689)	ENSIPUG00000002704	ENSIPUG00000002713	mfsd8 (ENSIPUG00000002729)	zcchc4 (ENSIPUG00000002789)	ENSIPUG00000002802	ENSIPUG00000002825	ABLIM2 (ENSIPUG00000002827) ##22	ENSIPUG00000002851	afap1 (ENSIPUG00000002861)	ENSIPUG00000002933	MKX (ENSIPUG00000002944)	ODAD2 (ENSIPUG00000002969)	mpp7a (ENSIPUG00000003014)	ENSIPUG00000003039	ENSIPUG00000003093	ENSIPUG00000003108	ENSIPUG00000003119	ENSIPUG00000003142	SYDE1 (ENSIPUG00000003163)	neurl4 (ENSIPUG00000003190)	ENSIPUG00000003274	HDLBP (ENSIPUG00000003291)
Characiphysae_b	ANCESTRAL SPECIES	3	ENSGT00940000157917.a.a.f	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000165211	ENSGT00940000159866	ENSGT00940000154035.a	ENSGT00940000161268	ENSGT00930000151033	ENSGT00940000159305	ENSGT00940000163587.a.b.b.e.b	ENSGT00530000063854	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164184	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b
Characoidei	ANCESTRAL SPECIES	6	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000165211	ENSGT00940000159866	ENSGT00940000154035.a	ENSGT00940000161268	ENSGT00930000151033	ENSGT00940000159305	ENSGT00940000163587.a.b.b.e.b	ENSGT00940000162705	ENSGT00940000164656.b.b.b.b	ENSGT00530000063854	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164184	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b
Red-bellied piranha	MODERN SPECIES	3	wnt3 (ENSPNAG00000010911)	nsfb (ENSPNAG00000006033)	ENSPNAG00000011029	ENSPNAG00000011104	NEURL4 (ENSPNAG00000001574)	ENSPNAG00000001584	ENSPNAG00000011183	POLR2A (ENSPNAG00000011237)	capgb (ENSPNAG00000011259)	ENSPNAG00000001653	ENSPNAG00000011295	ENSPNAG00000011306	mfsd8 (ENSPNAG00000006991)	ENSPNAG00000001696	zcchc4 (ENSPNAG00000001701)	ABLIM2 (ENSPNAG00000011468) ##22	AFAP1 (ENSPNAG00000011517)	rab18a (ENSPNAG00000011548)	mkxa (ENSPNAG00000001811)	ODAD2 (ENSPNAG00000001881)	mpp7a (ENSPNAG00000001916)	ENSPNAG00000005842	nploc4 (ENSPNAG00000001954)	ENSPNAG00000001961	ENSPNAG00000011840	gprc5c (ENSPNAG00000011847)	GPR142 (ENSPNAG00000011851)	BTBD17 (ENSPNAG00000011861)	map2k6 (ENSPNAG00000011870)	kcnj2a (ENSPNAG00000001985)	galr2a (ENSPNAG00000011891)
Mexicana tetra	MODERN SPECIES	21	ENSAMXG00000043705	nsfb (ENSAMXG00000019876)	ENSAMXG00000041001	ENSAMXG00000030776	ENSAMXG00000019946	NEURL4 (ENSAMXG00000019983)	ENSAMXG00000031200	ENSAMXG00000035481	POLR2A (ENSAMXG00000020046)	capgb (ENSAMXG00000031347)	ENSAMXG00000030948	ENSAMXG00000039749	ENSAMXG00000020064	mfsd8 (ENSAMXG00000038160)	zcchc4 (ENSAMXG00000031395)	ABLIM2 (ENSAMXG00000042957) ##22	ENSAMXG00000033954	AFAP1 (ENSAMXG00000030633)	mkxa (ENSAMXG00000013305)	ENSAMXG00000038824	mpp7a (ENSAMXG00000030959)	ENSAMXG00000032016	USH1G (ENSAMXG00000020117)	selenou1b (ENSAMXG00000020069)	ENSAMXG00000029160	ENSAMXG00000040221	ENSAMXG00000032450	CYP4F8 (ENSAMXG00000039116)	ENSAMXG00000041298	SYDE1 (ENSAMXG00000038498)	ENSAMXG00000025794
Electric eel	MODERN SPECIES	393																ABLIM2 (ENSEEEG00000013384) ##22	AFAP1 (ENSEEEG00000013477)	RAB18 (ENSEEEG00000013516)	mkxa (ENSEEEG00000013531)	ODAD2 (ENSEEEG00000013542)	mpp7a (ENSEEEG00000013545)	ENSEEEG00000013576	pax2b (ENSEEEG00000013577)
Cyprinoidei	ANCESTRAL SPECIES	26	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000165211	ENSGT00940000159866	ENSGT00940000165567	ENSGT00940000154035.a	ENSGT00940000161268	ENSGT00930000151033	ENSGT00940000159305	ENSGT00940000163587.a.b.b.e.b	ENSGT00530000063854	ENSGT00940000168370	ENSGT00390000012556	ENSGT00390000005970	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164184	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b	ENSGT00440000037780.a	ENSGT00940000154101.b.c.b	ENSGT00940000158806	ENSGT00940000158582	ENSGT00940000166891.a	ENSGT00940000166891.b	ENSGT00940000154653	ENSGT01030000234540.A.a.a.w.a	ENSGT00390000011433.s.b	ENSGT00390000003855.a
Zebrafish	MODERN SPECIES	3	ormdl3 (ENSDARG00000025555)	wnt3 (ENSDARG00000038990)	nsfb (ENSDARG00000038991)	ENSDARG00000061844	ENSDARG00000061864	NEURL4 (ENSDARG00000078127)	shbg (ENSDARG00000019492)	ENSDARG00000105255	POLR2A (ENSDARG00000099966)	capgb (ENSDARG00000099672)	ENSDARG00000096739	mfsd8 (ENSDARG00000103235)	zcchc4 (ENSDARG00000104531)	ENSDARG00000096804	cdca9 (ENSDARG00000088639)	ABLIM2 (ENSDARG00000055223) ##22	AFAP1 (ENSDARG00000055284)	rab18a (ENSDARG00000055291)	mkxa (ENSDARG00000075450)	ODAD2 (ENSDARG00000055128)	mpp7a (ENSDARG00000102470)	waca (ENSDARG00000012577)	bambia (ENSDARG00000055381)	MAP3K8 (ENSDARG00000061710)	MTPAP (ENSDARG00000076155)	ENSDARG00000089871	svila (ENSDARG00000055075)	psme4b (ENSDARG00000018742)	chac2 (ENSDARG00000055078)	asb3 (ENSDARG00000005246)	nrxn1a (ENSDARG00000061647)
Cyprininae	ANCESTRAL SPECIES	88	ENSGT00940000157917.a.a.d	ENSGT00950000183178.b.b.b.a.b	ENSGT00940000157854.y	ENSGT00530000064085.c.a	ENSGT01030000234571.b.b.a.a.b.e.a.a	ENSGT00940000165211.c	ENSGT00940000159866.c	ENSGT00940000165567	ENSGT00940000161268.g	ENSGT00930000151033.e	ENSGT00940000159305.bb.b	ENSGT00530000063854.c	ENSGT00940000168370.b	ENSGT00390000012556.a	ENSGT00390000005970.a	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a.f	ENSGT00940000164184.e	ENSGT00940000156227.f.i	ENSGT00940000156625.o	ENSGT00940000156232.b.b	ENSGT00440000037780.a.z	ENSGT00940000154101.b.c.b.b	ENSGT00940000158806.q	ENSGT00940000158582.i	ENSGT00940000166891.a.h	ENSGT00940000154653.p.b	ENSGT00390000011433.s.b.a	ENSGT00390000003855.a.b	ENSGT00940000159080.e	ENSGT00940000154292.a.b.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3	mrpl27 (ENSCARG00000021692)	ENSCARG00000021684	THRA (ENSCARG00000020032)	ormdl3 (ENSCARG00000019972)	wnt3 (ENSCARG00000019941)	ENSCARG00000019889	ENSCARG00000015373	NEURL4 (ENSCARG00000014646)	shbg (ENSCARG00000014584)	ENSCARG00000014578	POLR2A (ENSCARG00000014556)	capgb (ENSCARG00000014536)	mfsd8 (ENSCARG00000014518)	ENSCARG00000014513	zcchc4 (ENSCARG00000014477)	ABLIM2 (ENSCARG00000014219) ##22	AFAP1 (ENSCARG00000014088)	rab18a (ENSCARG00000014022)	cdca9 (ENSCARG00000013992)	mkxa (ENSCARG00000013975)	ODAD2 (ENSCARG00000013961)	mpp7a (ENSCARG00000012737)	waca (ENSCARG00000012662)	bambia (ENSCARG00000012651)	MAP3K8 (ENSCARG00000012648)	MTPAP (ENSCARG00000012640)	ENSCARG00000012634	svila (ENSCARG00000012484)	psme4b (ENSCARG00000012316)	chac2 (ENSCARG00000012289)	asb3 (ENSCARG00000012262)
Goldfish	MODERN SPECIES	30	THRA (ENSCARG00000006409)	ormdl3 (ENSCARG00000008491)	wnt3 (ENSCARG00000008494)	nsfb (ENSCARG00000008637)	ENSCARG00000011937	ENSCARG00000012054	NEURL4 (ENSCARG00000015754)	ENSCARG00000015953	ENSCARG00000015981	POLR2A (ENSCARG00000015989)	capgb (ENSCARG00000016017)	ENSCARG00000016045	mfsd8 (ENSCARG00000016060)	ENSCARG00000016208	cdca9 (ENSCARG00000016218)	ABLIM2 (ENSCARG00000016243) ##22	AFAP1 (ENSCARG00000016271)	rab18a (ENSCARG00000016409)	mkxa (ENSCARG00000016574)	ODAD2 (ENSCARG00000016619)	mpp7a (ENSCARG00000016886)	waca (ENSCARG00000018680)	bambia (ENSCARG00000018753)	MAP3K8 (ENSCARG00000018758)	MTPAP (ENSCARG00000018770)	ENSCARG00000018815	svila (ENSCARG00000019153)	psme4b (ENSCARG00000028435)	ENSCARG00000032377	asb3 (ENSCARG00000032386)	ENSCARG00000032577
Cyprininae_a	ANCESTRAL SPECIES	8	ENSGT00940000157917.a.a.d	ENSGT00950000183178.b.b.b.a.b	ENSGT00940000157854.y	ENSGT00530000064085.c.a	ENSGT01030000234571.b.b.a.a.b.e.a.a	ENSGT00940000165211.c	ENSGT00940000159866.c	ENSGT00940000154035.a.g	ENSGT00940000161268.g	ENSGT00930000151033.e	ENSGT00940000159305.bb.b	ENSGT00530000063854.c	ENSGT00940000168370.b	ENSGT00390000012556.a	ENSGT00390000005970.a	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a.f	ENSGT00940000164184.e	ENSGT00940000156227.f.i	ENSGT00940000156625.o	ENSGT00940000156232.b.b	ENSGT00440000037780.a.z	ENSGT00940000154101.b.c.b.b	ENSGT00940000158806.q	ENSGT00940000158582.i	ENSGT00940000166891.a.h	ENSGT00940000154653.p.b	ENSGT00390000011433.s.b.a	ENSGT00390000003855.a.b	ENSGT00940000159080.e	ENSGT00940000154292.a.b.a.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	25	ormdl3 (ENSCCRG00000015057)	wnt3 (ENSCCRG00000058564)	nsfb (ENSCCRG00000007814)	ENSCCRG00000063204	ENSCCRG00000011594	ENSCCRG00000011554	ENSCCRG00000032433	ENSCCRG00000074667	ENSCCRG00000079906	capgb (ENSCCRG00000033442)	ENSCCRG00000049029	mfsd8 (ENSCCRG00000055766)	zcchc4 (ENSCCRG00000060300)	ENSCCRG00000036104	cdca9 (ENSCCRG00000046835)	ENSCCRG00000058055 ##22	ENSCCRG00000001507	rab18a (ENSCCRG00000075147)	mkxa (ENSCCRG00000073641)	ODAD2 (ENSCCRG00000015428)	mpp7a (ENSCCRG00000061976)	waca (ENSCCRG00000026819)	bambia (ENSCCRG00000067488)	ENSCCRG00000020144	ENSCCRG00000020143	svila (ENSCCRG00000015186)	psme4b (ENSCCRG00000045880)	chac2 (ENSCCRG00000080988)	asb3 (ENSCCRG00000045913)	ENSCCRG00000080925	ENSCCRG00000047406
Common carp reference	MODERN SPECIES	44	ormdl3 (ENSCCRG00000069244)	wnt3 (ENSCCRG00000056023)	nsfb (ENSCCRG00000015087)	ENSCCRG00000048307	ENSCCRG00000048332	ENSCCRG00000048863	ENSCCRG00000048874	ENSCCRG00000054328	ENSCCRG00000062018	capgb (ENSCCRG00000036031)	ENSCCRG00000036271	mfsd8 (ENSCCRG00000077943)	ENSCCRG00000009065	zcchc4 (ENSCCRG00000008926)	ENSCCRG00000046842	ENSCCRG00000066542 ##22	ENSCCRG00000004777	rab18a (ENSCCRG00000076010)	mkxa (ENSCCRG00000004485)	ODAD2 (ENSCCRG00000004379)	mpp7a (ENSCCRG00000004348)	waca (ENSCCRG00000020077)	bambia (ENSCCRG00000026806)	ENSCCRG00000020148	ENSCCRG00000061636	svila (ENSCCRG00000047293)	psme4b (ENSCCRG00000047187)	chac2 (ENSCCRG00000045910)	asb3 (ENSCCRG00000015097)	ENSCCRG00000007045	ENSCCRG00000005363
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	58	THRA (ENSSGRG00000028963)	ORMDL3 (ENSSGRG00000028930)	wnt3 (ENSSGRG00000028902)	nsfb (ENSSGRG00000028165)	ENSSGRG00000028151	ENSSGRG00000026229	NEURL4 (ENSSGRG00000026171)	ENSSGRG00000026167	ENSSGRG00000026165	ENSSGRG00000025925	capgb (ENSSGRG00000025908)	mfsd8 (ENSSGRG00000025907)	ENSSGRG00000025903	zcchc4 (ENSSGRG00000025899)	cdca9 (ENSSGRG00000025893)	ABLIM2 (ENSSGRG00000025863) ##22	AFAP1 (ENSSGRG00000025646)	ENSSGRG00000025644	mkxa (ENSSGRG00000025643)	ODAD2 (ENSSGRG00000025641)	mpp7a (ENSSGRG00000025640)	waca (ENSSGRG00000025639)	bambia (ENSSGRG00000025637)	MAP3K8 (ENSSGRG00000025636)	ENSSGRG00000025635	ENSSGRG00000025634	svila (ENSSGRG00000025459)	psme4b (ENSSGRG00000025178)	chac2 (ENSSGRG00000025161)	asb3 (ENSSGRG00000025160)	ENSSGRG00000025157
Golden-line barbel	MODERN SPECIES	370																ENSSGRG00000002304 ##22	AFAP1 (ENSSGRG00000002303)	rab18a (ENSSGRG00000002082)	mkxa (ENSSGRG00000002060)	ODAD2 (ENSSGRG00000002054)	mpp7a (ENSSGRG00000001568)	waca (ENSSGRG00000001550)	bambia (ENSSGRG00000001546)	MAP3K8 (ENSSGRG00000001543)	MTPAP (ENSSGRG00000001420)	ENSSGRG00000001406	ENSSGRG00000001400	svila (ENSSGRG00000000904)	psme4b (ENSSGRG00000000402)	chac2 (ENSSGRG00000000113)	asb3 (ENSSGRG00000000102)
Spotted gar	MODERN SPECIES	670	msantd1 (ENSLOCG00000010411)	rgs12b (ENSLOCG00000010388)	HGFAC (ENSLOCG00000010382)	DOK7 (ENSLOCG00000010376)	lrpap1 (ENSLOCG00000010362)	adra2c (ENSLOCG00000018038)	ENSLOCG00000010357	hmx4 (ENSLOCG00000010349)	CPZ (ENSLOCG00000010330)	GPR78 (ENSLOCG00000010323)	trmt44 (ENSLOCG00000010316)	acox3 (ENSLOCG00000010299)	htra3a (ENSLOCG00000010288)	ENSLOCG00000010275	ENSLOCG00000010260	ABLIM2 (ENSLOCG00000010240) ##22	AFAP1 (ENSLOCG00000010207)	SORCS2 (ENSLOCG00000010190)	grpel1 (ENSLOCG00000010180)	tada2b (ENSLOCG00000010175)	ccdc96 (ENSLOCG00000018036)	ENSLOCG00000010172	TBC1D14 (ENSLOCG00000010162)	kiaa0232 (ENSLOCG00000010153)	S100P (ENSLOCG00000010147)	MAN2B2 (ENSLOCG00000010140)	ppp2r2ca (ENSLOCG00000010130)	WFS1 (ENSLOCG00000010122)	ENSLOCG00000010117	JAKMIP1 (ENSLOCG00000010109)	ENSLOCG00000010099
Reedfish	MODERN SPECIES	13	GUF1 (ENSECRG00000003129)	GABRG1 (ENSECRG00000002825)	ENSECRG00000002665	GABRA4 (ENSECRG00000002606)	ENSECRG00000002589	ENSECRG00000002533	commd8 (ENSECRG00000002491)	atp10d (ENSECRG00000002470)	CORIN (ENSECRG00000002380)	NFXL1 (ENSECRG00000002324)	cnga1a (ENSECRG00000002287)	NIPAL1 (ENSECRG00000002259)	ENSECRG00000002250	ENSECRG00000002231	tec (ENSECRG00000002195)	ABLIM2 (ENSECRG00000002064) ##22	AFAP1 (ENSECRG00000001962)	SORCS2 (ENSECRG00000001726)	ENSECRG00000001624	grpel1 (ENSECRG00000001615)	tada2b (ENSECRG00000001599)	ccdc96 (ENSECRG00000001586)	ENSECRG00000001572	TBC1D14 (ENSECRG00000001527)	kiaa0232 (ENSECRG00000001480)	S100P (ENSECRG00000001461)	MAN2B2 (ENSECRG00000001421)	ppp2r2ca (ENSECRG00000001116)	WFS1 (ENSECRG00000000949)	ENSECRG00000003947	JAKMIP1 (ENSECRG00000003936)
Sarcopterygii	ANCESTRAL SPECIES	2	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000165038	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c
Coelacanth	MODERN SPECIES	1848															ENSLACG00000002491	ABLIM2 (ENSLACG00000004588) ##22
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000165038	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b
Anura	ANCESTRAL SPECIES	2	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000165038	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B
Frog	MODERN SPECIES		lyar (ENSXETG00000016038)	zbtb49 (ENSXETG00000016041)	nsg1 (ENSXETG00000038539)	stx18 (ENSXETG00000016051)	msx1 (ENSXETG00000044104)	cytl1 (ENSXETG00000032408)	stk32b (ENSXETG00000030063)	ENSXETG00000048912	evc2 (ENSXETG00000029923)	evc (ENSXETG00000033121)	crmp1 (ENSXETG00000011600)	jakmip1 (ENSXETG00000011601)	wfs1 (ENSXETG00000035947)	ppp2r2c (ENSXETG00000011604)	man2b2 (ENSXETG00000011609)	ablim2 (ENSXETG00000011610) ##22	afap1 (ENSXETG00000011611)	ENSXETG00000048627	sorcs2 (ENSXETG00000022892)	grpel1 (ENSXETG00000022900)	tada2b (ENSXETG00000022903)	ccdc96 (ENSXETG00000037177)	tbc1d14 (ENSXETG00000022908)	adpgkl (ENSXETG00000022910)	kiaa0232 (ENSXETG00000022909)	s100p (ENSXETG00000031325)	ENSXETG00000039660	sh3tc1 (ENSXETG00000031697)	htra3 (ENSXETG00000032274)	trmt44 (ENSXETG00000030882)	acox3 (ENSXETG00000031495)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000000714	CPZ (ENSLLEG00000000650)	GPR78 (ENSLLEG00000000638)	ENSLLEG00000000624	TRMT44 (ENSLLEG00000000534)	ENSLLEG00000000517	ENSLLEG00000000456	ACOX3 (ENSLLEG00000000388)	HTRA3 (ENSLLEG00000000364)	ENSLLEG00000000355	ENSLLEG00000000349	ENSLLEG00000000329	ENSLLEG00000000321	ENSLLEG00000000293	ENSLLEG00000000281	ABLIM2 (ENSLLEG00000000194) ##22	ENSLLEG00000003724	AFAP1 (ENSLLEG00000003640)	SORCS2 (ENSLLEG00000003556)	ENSLLEG00000003541	ENSLLEG00000003534	WFS1 (ENSLLEG00000003519)	PPP2R2C (ENSLLEG00000003349)	MAN2B2 (ENSLLEG00000003261)	ENSLLEG00000003244	ENSLLEG00000003234	ENSLLEG00000003220	ENSLLEG00000003214	ENSLLEG00000003209	ENSLLEG00000003188	ENSLLEG00000003167
Amniota	ANCESTRAL SPECIES	2	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c	ENSGT01030000235227
Sauria	ANCESTRAL SPECIES	6	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.b	ENSGT00390000003220	ENSGT00940000166785	ENSGT00940000153713.B.c.a
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000236356	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c.a	ENSGT01030000235227
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000236356	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000235227
Aves	ANCESTRAL SPECIES	3	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b
African ostrich	MODERN SPECIES	1016	GRK4 (ENSSCUG00000015602)	HTT (ENSSCUG00000015693)	MSANTD1 (ENSSCUG00000015836)	RGS12 (ENSSCUG00000015845)	HGFAC (ENSSCUG00000015856)	DOK7 (ENSSCUG00000015865)	LRPAP1 (ENSSCUG00000015871)	ADRA2C (ENSSCUG00000015879)	HMX3 (ENSSCUG00000015881)	CPZ (ENSSCUG00000015884)	GPR78 (ENSSCUG00000015887)	TRMT44 (ENSSCUG00000015891)	ACOX3 (ENSSCUG00000015894)	HTRA3 (ENSSCUG00000015900)	ENSSCUG00000015904	ABLIM2 (ENSSCUG00000015911) ##22	AFAP1 (ENSSCUG00000015923)	SORCS2 (ENSSCUG00000015929)	TADA2B (ENSSCUG00000015935)	GRPEL1 (ENSSCUG00000015939)	TBC1D14 (ENSSCUG00000015944)	KIAA0232 (ENSSCUG00000015948)	ENSSCUG00000015966	MAN2B2 (ENSSCUG00000015968)	PPP2R2C (ENSSCUG00000015970)	WFS1 (ENSSCUG00000015976)	ENSSCUG00000015982	ENSSCUG00000015986	ENSSCUG00000015997	CRMP1 (ENSSCUG00000016009)	EVC (ENSSCUG00000016014)
Neognathae	ANCESTRAL SPECIES	5	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263482.B.a.d	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B	ENSGT00940000154127.A
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263482.B.a.d	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b.i	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B	ENSGT00940000154127.A
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263482.B.a.d	ENSGT00940000161707.b	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b.j	ENSGT01030000234638.b.a.b.i	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B
Medium ground finch	MODERN SPECIES	75	GRK4 (ENSGFOG00000008414)	HTT (ENSGFOG00000000476)	MSANTD1 (ENSGFOG00000000975)	RGS12 (ENSGFOG00000000986)	HGFAC (ENSGFOG00000001002)	DOK7 (ENSGFOG00000001026)	LRPAP1 (ENSGFOG00000001041)	ENSGFOG00000001062	ADRA2C (ENSGFOG00000001073)	CPZ (ENSGFOG00000001084)	GPR78 (ENSGFOG00000001107)	TRMT44 (ENSGFOG00000001125)	ACOX3 (ENSGFOG00000001152)	HTRA3 (ENSGFOG00000001170)	ENSGFOG00000001207	ABLIM2 (ENSGFOG00000001473) ##22	AFAP1 (ENSGFOG00000002362)	SORCS2 (ENSGFOG00000002421)	GRPEL1 (ENSGFOG00000002535)	TADA2B (ENSGFOG00000002554)	TBC1D14 (ENSGFOG00000002583)	ENSGFOG00000002632	ENSGFOG00000002648	S100P (ENSGFOG00000002658)	ENSGFOG00000002687
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263482.B.a.d	ENSGT00940000161707.b	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b.i	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B	ENSGT00940000154127.A
Zebra finch	MODERN SPECIES	25	MSANTD1 (ENSTGUG00000010397)	RGS12 (ENSTGUG00000010365)	HGFAC (ENSTGUG00000010360)	DOK7 (ENSTGUG00000010345)	LRPAP1 (ENSTGUG00000010329)	ENSTGUG00000010325	ADRA2C (ENSTGUG00000010321)	ENSTGUG00000028917	ENSTGUG00000010318	CPZ (ENSTGUG00000010292)	GPR78 (ENSTGUG00000010289)	TRMT44 (ENSTGUG00000010279)	ACOX3 (ENSTGUG00000010262)	HTRA3 (ENSTGUG00000010252)	ENSTGUG00000010236	ABLIM2 (ENSTGUG00000010211) ##22	AFAP1 (ENSTGUG00000010189)	SORCS2 (ENSTGUG00000010129)	GRPEL1 (ENSTGUG00000020628)	TADA2B (ENSTGUG00000026011)	TBC1D14 (ENSTGUG00000010105)	KIAA0232 (ENSTGUG00000010100)	S100P (ENSTGUG00000010098)	MAN2B2 (ENSTGUG00000010078)	PPP2R2C (ENSTGUG00000010058)	WFS1 (ENSTGUG00000010045)	JAKMIP1 (ENSTGUG00000010025)	ENSTGUG00000027123	CRMP1 (ENSTGUG00000010001)	ENSTGUG00000029632	EVC (ENSTGUG00000009987)
Common canary	MODERN SPECIES	2	HTT (ENSSCAG00000015474)	MSANTD1 (ENSSCAG00000015491)	RGS12 (ENSSCAG00000015496)	HGFAC (ENSSCAG00000015504)	DOK7 (ENSSCAG00000015507)	LRPAP1 (ENSSCAG00000015510)	ENSSCAG00000015522	ADRA2C (ENSSCAG00000015532)	ENSSCAG00000015536	CPZ (ENSSCAG00000015543)	GPR78 (ENSSCAG00000015546)	TRMT44 (ENSSCAG00000015556)	ACOX3 (ENSSCAG00000015562)	HTRA3 (ENSSCAG00000015569)	ENSSCAG00000015579	ABLIM2 (ENSSCAG00000015639) ##22	AFAP1 (ENSSCAG00000015833)	SORCS2 (ENSSCAG00000015922)	GRPEL1 (ENSSCAG00000016023)	TADA2B (ENSSCAG00000016028)	TBC1D14 (ENSSCAG00000016030)	KIAA0232 (ENSSCAG00000016039)	S100P (ENSSCAG00000016046)	MAN2B2 (ENSSCAG00000016052)	PPP2R2C (ENSSCAG00000016060)	WFS1 (ENSSCAG00000000100)	ENSSCAG00000000115	ENSSCAG00000000128	ENSSCAG00000000138	CRMP1 (ENSSCAG00000000179)	EVC (ENSSCAG00000000198)
Flycatcher	MODERN SPECIES	22	MSANTD1 (ENSFALG00000009729)	RGS12 (ENSFALG00000009727)	HGFAC (ENSFALG00000009723)	DOK7 (ENSFALG00000009722)	LRPAP1 (ENSFALG00000009713)	ENSFALG00000009708	ADRA2C (ENSFALG00000014832)	HMX1 (ENSFALG00000009706)	ENSFALG00000024180	CPZ (ENSFALG00000009697)	GPR78 (ENSFALG00000009692)	TRMT44 (ENSFALG00000009686)	ACOX3 (ENSFALG00000009684)	HTRA3 (ENSFALG00000009680)	ENSFALG00000009677	ABLIM2 (ENSFALG00000009676) ##22	AFAP1 (ENSFALG00000009673)	SORCS2 (ENSFALG00000009666)	GRPEL1 (ENSFALG00000026769)	TADA2B (ENSFALG00000009654)	TBC1D14 (ENSFALG00000009650)	KIAA0232 (ENSFALG00000009641)	S100P (ENSFALG00000024959)	MAN2B2 (ENSFALG00000009630)	PPP2R2C (ENSFALG00000009617)	WFS1 (ENSFALG00000009607)	JAKMIP1 (ENSFALG00000009595)	ENSFALG00000023527	CRMP1 (ENSFALG00000009557)	EVC (ENSFALG00000009507)	EVC2 (ENSFALG00000009488)
Great tit	MODERN SPECIES	23	MSANTD1 (ENSPMJG00000016450)	RGS12 (ENSPMJG00000016449)	HGFAC (ENSPMJG00000016448)	DOK7 (ENSPMJG00000016447)	LRPAP1 (ENSPMJG00000016446)	ENSPMJG00000016445	ADRA2C (ENSPMJG00000016442)	ENSPMJG00000016441	ENSPMJG00000016440	CPZ (ENSPMJG00000016439)	GPR78 (ENSPMJG00000016438)	TRMT44 (ENSPMJG00000016436)	ACOX3 (ENSPMJG00000016435)	HTRA3 (ENSPMJG00000016434)	ENSPMJG00000016433	ABLIM2 (ENSPMJG00000016432) ##22	AFAP1 (ENSPMJG00000016431)	SORCS2 (ENSPMJG00000016424)	GRPEL1 (ENSPMJG00000016422)	TADA2B (ENSPMJG00000016421)	TBC1D14 (ENSPMJG00000016420)	KIAA0232 (ENSPMJG00000016419)	S100P (ENSPMJG00000016418)	MAN2B2 (ENSPMJG00000016417)	PPP2R2C (ENSPMJG00000016415)	WFS1 (ENSPMJG00000016414)	JAKMIP1 (ENSPMJG00000016413)	ENSPMJG00000016412	CRMP1 (ENSPMJG00000016411)	EVC (ENSPMJG00000016410)	EVC2 (ENSPMJG00000016409)
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b
Kakapo	MODERN SPECIES	24	MSANTD1 (ENSSHBG00005016239)	RGS12 (ENSSHBG00005016307)	ENSSHBG00005016933	ENSSHBG00005016937	DOK7 (ENSSHBG00005016947)	LRPAP1 (ENSSHBG00005016957)	ADRA2C (ENSSHBG00005016961)	ENSSHBG00005016964	ENSSHBG00005016970	CPZ (ENSSHBG00005016978)	GPR78 (ENSSHBG00005016989)	TRMT44 (ENSSHBG00005016993)	ACOX3 (ENSSHBG00005017015)	HTRA3 (ENSSHBG00005017129)	ENSSHBG00005017135	ABLIM2 (ENSSHBG00005017227) ##22	AFAP1 (ENSSHBG00005018588)	SORCS2 (ENSSHBG00005018635)	GRPEL1 (ENSSHBG00005018773)	TADA2B (ENSSHBG00005018792)	TBC1D14 (ENSSHBG00005018800)	KIAA0232 (ENSSHBG00005018818)	S100P (ENSSHBG00005018824)	MAN2B2 (ENSSHBG00005018830)	PPP2R2C (ENSSHBG00005018840)	WFS1 (ENSSHBG00005018849)	JAKMIP1 (ENSSHBG00005018856)	ENSSHBG00005018866	CRMP1 (ENSSHBG00005018895)	EVC (ENSSHBG00005018912)	EVC2 (ENSSHBG00005018930)
Golden eagle	MODERN SPECIES		HTT (ENSACCG00020000124)	MSANTD1 (ENSACCG00020000125)	RGS12 (ENSACCG00020000126)	HGFAC (ENSACCG00020000127)	DOK7 (ENSACCG00020000128)	LRPAP1 (ENSACCG00020000129)	ADRA2C (ENSACCG00020000130)	ENSACCG00020000131	ENSACCG00020000132	CPZ (ENSACCG00020000133)	GPR78 (ENSACCG00020000134)	TRMT44 (ENSACCG00020000135)	ACOX3 (ENSACCG00020000136)	HTRA3 (ENSACCG00020000137)	ENSACCG00020000138	ABLIM2 (ENSACCG00020000139) ##22	AFAP1 (ENSACCG00020000140)	SORCS2 (ENSACCG00020000141)	GRPEL1 (ENSACCG00020000142)	TADA2B (ENSACCG00020000143)	ENSACCG00020000144	TBC1D14 (ENSACCG00020000145)	KIAA0232 (ENSACCG00020000146)	S100P (ENSACCG00020000147)	MAN2B2 (ENSACCG00020000148)	PPP2R2C (ENSACCG00020000150)	WFS1 (ENSACCG00020000151)	ENSACCG00020000152	ENSACCG00020000153	ENSACCG00020000154	CRMP1 (ENSACCG00020000155)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B
Pink-footed goose	MODERN SPECIES	7	HTT (ENSABRG00000005491)	MSANTD1 (ENSABRG00000005427)	RGS12 (ENSABRG00000004091)	HGFAC (ENSABRG00000003427)	DOK7 (ENSABRG00000003334)	LRPAP1 (ENSABRG00000003299)	ADRA2C (ENSABRG00000003272)	ENSABRG00000003242	ENSABRG00000003230	CPZ (ENSABRG00000003208)	GPR78 (ENSABRG00000003186)	TRMT44 (ENSABRG00000003154)	ACOX3 (ENSABRG00000003051)	HTRA3 (ENSABRG00000003022)	ENSABRG00000002976	ABLIM2 (ENSABRG00000002855) ##22	AFAP1 (ENSABRG00000002757)	SORCS2 (ENSABRG00000002579)	GRPEL1 (ENSABRG00000002454)	TADA2B (ENSABRG00000002438)	ENSABRG00000002425	TBC1D14 (ENSABRG00000002358)	KIAA0232 (ENSABRG00000002341)	S100P (ENSABRG00000002317)	MAN2B2 (ENSABRG00000002285)	PPP2R2C (ENSABRG00000002144)	WFS1 (ENSABRG00000002111)	JAKMIP1 (ENSABRG00000001971)	ENSABRG00000001914	CRMP1 (ENSABRG00000001873)	EVC (ENSABRG00000001811)
Duck	MODERN SPECIES	22	MSANTD1 (ENSAPLG00000008738)	ENSAPLG00000008768	ENSAPLG00000017346	HGFAC (ENSAPLG00000009213)	DOK7 (ENSAPLG00000009564)	LRPAP1 (ENSAPLG00000009747)	ADRA2C (ENSAPLG00000000625)	ENSAPLG00000030640	ENSAPLG00000028415	CPZ (ENSAPLG00000010071)	GPR78 (ENSAPLG00000010509)	TRMT44 (ENSAPLG00000010512)	ACOX3 (ENSAPLG00000010626)	HTRA3 (ENSAPLG00000020579)	ENSAPLG00000011482	ABLIM2 (ENSAPLG00000012162) ##22	AFAP1 (ENSAPLG00000012327)	SORCS2 (ENSAPLG00000012740)	KIAA0232 (ENSAPLG00000013499)	GRPEL1 (ENSAPLG00000023287)	TADA2B (ENSAPLG00000000629)	ENSAPLG00000000631	TBC1D14 (ENSAPLG00000013358)	S100P (ENSAPLG00000013517)	MAN2B2 (ENSAPLG00000005435)	PPP2R2C (ENSAPLG00000012437)	WFS1 (ENSAPLG00000012849)	ENSAPLG00000005851	ENSAPLG00000018584	ENSAPLG00000030559	EVC (ENSAPLG00000004565)
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000153118.eb.h	ENSGT00940000161707.b	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a.k ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT01070000257179	ENSGT01030000236356	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000235227
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000153118.eb.h	ENSGT00940000161707.b	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a.k ##22	ENSGT00950000183067.a.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT01070000257179	ENSGT01030000236356	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b.a	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT01030000235227	ENSGT01030000234527.A.a.b.b.b
Chicken	MODERN SPECIES	33	RGS12 (ENSGALG00010016340)	HGFAC (ENSGALG00010016263)	ENSGALG00010016229	DOK7 (ENSGALG00010016696)	LRPAP1 (ENSGALG00010016673)	ENSGALG00010016662	ADRA2C (ENSGALG00010016648)	HMX1 (ENSGALG00010016091)	SOHO1 (ENSGALG00010016057)	CPZ (ENSGALG00010017003)	GPR78 (ENSGALG00010016990)	TRMT44 (ENSGALG00010016423)	ACOX3 (ENSGALG00010009294)	HTRA3 (ENSGALG00010009102)	SH3TC1 (ENSGALG00010009700)	ABLIM2 (ENSGALG00010009653) ##22	AFAP1 (ENSGALG00010009608)	SORCS2 (ENSGALG00010011655)	GRPEL1 (ENSGALG00010011638)	TADA2B (ENSGALG00010011633)	ENSGALG00010011612	TBC1D14 (ENSGALG00010011597)	KIAA0232 (ENSGALG00010011549)	ENSGALG00010011522	ENSGALG00010011498	MAN2B2 (ENSGALG00010011487)	PPP2R2C (ENSGALG00010011465)	WFS1 (ENSGALG00010011417)	JAKMIP1 (ENSGALG00010011399)	ENSGALG00010011368	CRMP1 (ENSGALG00010011345)
Turkey	MODERN SPECIES	24	ENSMGAG00000017303	ENSMGAG00000011071	ENSMGAG00000022581	ENSMGAG00000017070	ENSMGAG00000010973	ENSMGAG00000019985	ENSMGAG00000017568	ENSMGAG00000020370	ENSMGAG00000021760	ENSMGAG00000010976	ENSMGAG00000018249	ENSMGAG00000020209	ENSMGAG00000012828	ENSMGAG00000012869	ENSMGAG00000021717	ENSMGAG00000012854 ##22	ENSMGAG00000022298 ##22	ENSMGAG00000012847	HTRA3 (ENSMGAG00000012882)	ENSMGAG00000012878	ENSMGAG00000012879	GPR78 (ENSMGAG00000012900)	ENSMGAG00000012892	ENSMGAG00000017633	ENSMGAG00000015757	ENSMGAG00000015760	ENSMGAG00000017513	ENSMGAG00000012902	ENSMGAG00000012909	ENSMGAG00000012912	ENSMGAG00000018158
Japanese quail	MODERN SPECIES	22	ENSCJPG00005018621	ENSCJPG00005018620	HGFAC (ENSCJPG00005018570)	DOK7 (ENSCJPG00005018569)	LRPAP1 (ENSCJPG00005018568)	ENSCJPG00005018564	ADRA2C (ENSCJPG00005018563)	ENSCJPG00005018561	ENSCJPG00005018560	CPZ (ENSCJPG00005018559)	GPR78 (ENSCJPG00005018558)	TRMT44 (ENSCJPG00005018557)	ACOX3 (ENSCJPG00005018556)	HTRA3 (ENSCJPG00005018553)	ENSCJPG00005018551	ABLIM2 (ENSCJPG00005018550) ##22	AFAP1 (ENSCJPG00005018549)	SORCS2 (ENSCJPG00005018548)	GRPEL1 (ENSCJPG00005018547)	TADA2B (ENSCJPG00005018546)	ENSCJPG00005018545	TBC1D14 (ENSCJPG00005018544)	KIAA0232 (ENSCJPG00005018543)	ENSCJPG00005018541	ENSCJPG00005018540	MAN2B2 (ENSCJPG00005018539)	PPP2R2C (ENSCJPG00005018536)	WFS1 (ENSCJPG00005018535)	ENSCJPG00005018534	ENSCJPG00005018533	ENSCJPG00005018532
Phasianidae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.l ##22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.l ##22
Turkey	MODERN SPECIES	24	ENSMGAG00000011071	ENSMGAG00000022581	ENSMGAG00000017070	ENSMGAG00000010973	ENSMGAG00000019985	ENSMGAG00000017568	ENSMGAG00000020370	ENSMGAG00000021760	ENSMGAG00000010976	ENSMGAG00000018249	ENSMGAG00000020209	ENSMGAG00000012828	ENSMGAG00000012869	ENSMGAG00000021717	ENSMGAG00000012854 ##22	ENSMGAG00000022298 ##22	ENSMGAG00000012847	HTRA3 (ENSMGAG00000012882)	ENSMGAG00000012878	ENSMGAG00000012879	GPR78 (ENSMGAG00000012900)	ENSMGAG00000012892	ENSMGAG00000017633	ENSMGAG00000015757	ENSMGAG00000015760	ENSMGAG00000017513	ENSMGAG00000012902	ENSMGAG00000012909	ENSMGAG00000012912	ENSMGAG00000018158	ENSMGAG00000012930
Australian saltwater crocodile	MODERN SPECIES	65	RGS12 (ENSCPRG00005002625)	ENSCPRG00005002916	ENSCPRG00005002921	DOK7 (ENSCPRG00005002935)	LRPAP1 (ENSCPRG00005002961)	ADRA2C (ENSCPRG00005003063)	ENSCPRG00005003080	ENSCPRG00005003084	HMX1 (ENSCPRG00005003086)	CPZ (ENSCPRG00005003114)	GPR78 (ENSCPRG00005003128)	TRMT44 (ENSCPRG00005003147)	ENSCPRG00005003171	HTRA3 (ENSCPRG00005003226)	ENSCPRG00005003262	ABLIM2 (ENSCPRG00005003360) ##22	AFAP1 (ENSCPRG00005003509)	SORCS2 (ENSCPRG00005003524)	ENSCPRG00005003557	GRPEL1 (ENSCPRG00005003566)	TADA2B (ENSCPRG00005003569)	ENSCPRG00005003574	TBC1D14 (ENSCPRG00005003585)	KIAA0232 (ENSCPRG00005003604)	S100P (ENSCPRG00005003629)	ENSCPRG00005003633	MAN2B2 (ENSCPRG00005003638)	PPP2R2C (ENSCPRG00005003659)	WFS1 (ENSCPRG00005003665)	JAKMIP1 (ENSCPRG00005003672)	ENSCPRG00005003680
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000236356	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000159778	ENSGT00390000001149	ENSGT00390000003127	ENSGT00940000170324	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000236356	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00390000002245	ENSGT00940000159741.h	ENSGT00940000159778	ENSGT00390000001149.d	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT01030000234527.A.a.b.b.b
Goode s thornscrub tortoise	MODERN SPECIES	19	HTT (ENSGEVG00005002723)	MSANTD1 (ENSGEVG00005003475)	RGS12 (ENSGEVG00005003494)	HGFAC (ENSGEVG00005003528)	ENSGEVG00005003553	DOK7 (ENSGEVG00005003575)	LRPAP1 (ENSGEVG00005003603)	ADRA2C (ENSGEVG00005009045)	ENSGEVG00005009071	ENSGEVG00005009099	CPZ (ENSGEVG00005009142)	GPR78 (ENSGEVG00005009219)	ACOX3 (ENSGEVG00005009570)	HTRA3 (ENSGEVG00005009626)	ENSGEVG00005009702	ABLIM2 (ENSGEVG00005010117) ##22	AFAP1 (ENSGEVG00005010457)	SORCS2 (ENSGEVG00005010610)	GRPEL1 (ENSGEVG00005011217)	TADA2B (ENSGEVG00005011238)	ENSGEVG00005011256	TBC1D14 (ENSGEVG00005011285)	KIAA0232 (ENSGEVG00005011333)	S100P (ENSGEVG00005011358)	MAN2B2 (ENSGEVG00005011458)	PPP2R2C (ENSGEVG00005011619)	WFS1 (ENSGEVG00005011738)	ENSGEVG00005011783	ENSGEVG00005011851	ENSGEVG00005011898	CRMP1 (ENSGEVG00005011994)
Abingdon island giant tortoise	MODERN SPECIES	2596										CPZ (ENSCABG00000019519)	GPR78 (ENSCABG00000019514)	TRMT44 (ENSCABG00000019506)	ACOX3 (ENSCABG00000019497)	HTRA3 (ENSCABG00000019493)	ENSCABG00000019472	ABLIM2 (ENSCABG00000019460) ##22
Emydidae	ANCESTRAL SPECIES	1	ENSGT00390000002245	ENSGT00940000159741.h	ENSGT00940000159778	ENSGT00390000001149.e	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000236356	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c.a	ENSGT00940000153713.B.c.b	ENSGT00390000003220
painted turtle	MODERN SPECIES	2381															ENSCPBG00000023279	ABLIM2 (ENSCPBG00000023275) ##22	AFAP1 (ENSCPBG00000023272)	SORCS2 (ENSCPBG00000023266)	TXNRD1 (ENSCPBG00000023232)	CHST11 (ENSCPBG00000023228)	SLC41A2 (ENSCPBG00000023226)	ENSCPBG00000023225	ALDH1L2 (ENSCPBG00000023220)	WASHC4 (ENSCPBG00000023215)	APPL2 (ENSCPBG00000023209)	ENSCPBG00000023208	NUAK1 (ENSCPBG00000023206)	CKAP4 (ENSCPBG00000023205)	TCP11L2 (ENSCPBG00000023203)	POLR3B (ENSCPBG00000023199)	RFX4 (ENSCPBG00000023197)
Three-toed box turtle	MODERN SPECIES	26	ENSTMTG00000000958	ENSTMTG00000000940	HGFAC (ENSTMTG00000000923)	ENSTMTG00000000913	DOK7 (ENSTMTG00000000894)	LRPAP1 (ENSTMTG00000000865)	ADRA2C (ENSTMTG00000000854)	HMX1 (ENSTMTG00000000845)	ENSTMTG00000000832	CPZ (ENSTMTG00000000812)	GPR78 (ENSTMTG00000000785)	TRMT44 (ENSTMTG00000000727)	ACOX3 (ENSTMTG00000000680)	HTRA3 (ENSTMTG00000000640)	ENSTMTG00000000583	ABLIM2 (ENSTMTG00000000378) ##22	AFAP1 (ENSTMTG00000000264)	SORCS2 (ENSTMTG00000000224)	GRPEL1 (ENSTMTG00000000187)	TADA2B (ENSTMTG00000000170)	ENSTMTG00000000147	TBC1D14 (ENSTMTG00000000113)	KIAA0232 (ENSTMTG00000000071)	S100P (ENSTMTG00000008342)	ENSTMTG00000008326	MAN2B2 (ENSTMTG00000008295)	PPP2R2C (ENSTMTG00000008237)	WFS1 (ENSTMTG00000008214)	ENSTMTG00000008189	JAKMIP1 (ENSTMTG00000008119)	CRMP1 (ENSTMTG00000007924)
Chinese turtle	MODERN SPECIES	1451	HGFAC (ENSPSIG00000014780)	ENSPSIG00000014759	DOK7 (ENSPSIG00000014752)	LRPAP1 (ENSPSIG00000014672)	ENSPSIG00000000922	ADRA2C (ENSPSIG00000000913)	ENSPSIG00000000907	ENSPSIG00000014657	ENSPSIG00000014653	ENSPSIG00000014536	GPR78 (ENSPSIG00000014522)	TRMT44 (ENSPSIG00000014471)	ACOX3 (ENSPSIG00000013982)	HTRA3 (ENSPSIG00000013705)	ENSPSIG00000013599	ABLIM2 (ENSPSIG00000012808) ##22	ENSPSIG00000012785	AFAP1 (ENSPSIG00000012038)	SORCS2 (ENSPSIG00000011002)	GRPEL1 (ENSPSIG00000010924)	TADA2B (ENSPSIG00000010812)	ENSPSIG00000010792	TBC1D14 (ENSPSIG00000010414)	KIAA0232 (ENSPSIG00000010236)	S100P (ENSPSIG00000010218)	MAN2B2 (ENSPSIG00000008794)	PPP2R2C (ENSPSIG00000007905)	WFS1 (ENSPSIG00000007097)	ENSPSIG00000006793	ENSPSIG00000006621	ENSPSIG00000000900
Lepidosauria	ANCESTRAL SPECIES	117			ENSGT00390000004855	ENSGT00390000015386	ENSGT00940000159778	ENSGT00940000159741	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871
tuatara	MODERN SPECIES	1102									ENSSPUG00000002621	CPZ (ENSSPUG00000002585)	GPR78 (ENSSPUG00000002573)	TRMT44 (ENSSPUG00000002536)	ACOX3 (ENSSPUG00000002476)	HTRA3 (ENSSPUG00000002448)	ENSSPUG00000002294	ABLIM2 (ENSSPUG00000002233) ##22	AFAP1 (ENSSPUG00000002204)	SORCS2 (ENSSPUG00000002072)	GRPEL1 (ENSSPUG00000002013)	TADA2B (ENSSPUG00000001999)	ENSSPUG00000001994	TBC1D14 (ENSSPUG00000001970)	ENSSPUG00000001957	ENSSPUG00000001954	S100P (ENSSPUG00000001942)
Episquamata	ANCESTRAL SPECIES	3	ENSGT00830000128422	ENSGT00390000017459	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159778	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000160313	ENSGT00940000161053	ENSGT01100000263564.b	ENSGT00390000009359.a	ENSGT01020000230338	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477	ENSGT00390000012901	ENSGT00940000159350	ENSGT00940000157037.a	ENSGT00940000159192	ENSGT00390000009416
Laterata	ANCESTRAL SPECIES	21	ENSGT00830000128422	ENSGT00390000017459	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159778	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000160313	ENSGT00940000161053	ENSGT01100000263564.b	ENSGT00390000009359.a	ENSGT01020000230338.h	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477	ENSGT00390000012901	ENSGT00940000159350	ENSGT00940000157037.a	ENSGT00940000159192	ENSGT00390000009416
Argentine black and white tegu	MODERN SPECIES	1	ENSSMRG00000023403	NOP14 (ENSSMRG00000023404)	HTT (ENSSMRG00000023405)	MSANTD1 (ENSSMRG00000023407)	HGFAC (ENSSMRG00000023408)	RGS12 (ENSSMRG00000023409)	DOK7 (ENSSMRG00000023411)	ADRA2C (ENSSMRG00000023413)	HMX1 (ENSSMRG00000023414)	ENSSMRG00000023415	CPZ (ENSSMRG00000023416)	TRMT44 (ENSSMRG00000023417)	ACOX3 (ENSSMRG00000023418)	HTRA3 (ENSSMRG00000023419)	ENSSMRG00000023420	ABLIM2 (ENSSMRG00000023421) ##22	ENSSMRG00000023422	FOXJ2 (ENSSMRG00000023423)	C3AR1 (ENSSMRG00000023424)	NECAP1 (ENSSMRG00000023425)	ENSSMRG00000023426	MSX1 (ENSSMRG00000023427)	STX18 (ENSSMRG00000023429)	NSG1 (ENSSMRG00000023430)	ZBTB49 (ENSSMRG00000023431)	LYAR (ENSSMRG00000023432)	TMEM128 (ENSSMRG00000023433)	OTOP1 (ENSSMRG00000023434)	DRD5 (ENSSMRG00000023435)	SLC2A9 (ENSSMRG00000023436)	ENSSMRG00000023437
Common wall lizard	MODERN SPECIES	17	ETFA (ENSPMRG00000013980)	TMEM266 (ENSPMRG00000013993)	NRG4 (ENSPMRG00000014034)	FBXO22 (ENSPMRG00000014042)	UBE2Q2 (ENSPMRG00000014073)	ENSPMRG00000014131	CHRNB4 (ENSPMRG00000014135)	CHRNA3 (ENSPMRG00000014141)	ENSPMRG00000014145	CHRNA5 (ENSPMRG00000014151)	ENSPMRG00000014155	PSMA4 (ENSPMRG00000014165)	HYKK (ENSPMRG00000014179)	ENSPMRG00000014185	ENSPMRG00000014192	ABLIM2 (ENSPMRG00000014210) ##22	ENSPMRG00000014231	ENSPMRG00000014247	FOXJ2 (ENSPMRG00000014253)	C3AR1 (ENSPMRG00000014262)	NECAP1 (ENSPMRG00000014274)	ENSPMRG00000015800	ENSPMRG00000015806	ENSPMRG00000015813	ENSPMRG00000015820	ENSPMRG00000015828	STX18 (ENSPMRG00000015836)	NSG1 (ENSPMRG00000015856)	ZBTB49 (ENSPMRG00000015875)	LYAR (ENSPMRG00000015894)	TMEM128 (ENSPMRG00000015902)
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00390000002216	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159778	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000160313	ENSGT00940000161053	ENSGT01100000263564.b	ENSGT00390000009359.a	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477	ENSGT00390000012901	ENSGT00940000159350	ENSGT00940000157037.a	ENSGT00940000159192	ENSGT00390000009416	ENSGT00940000161833
Elapidae	ANCESTRAL SPECIES	65													ENSGT00390000000645	ENSGT00940000159423	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000160313	ENSGT00940000161053	ENSGT01100000263564.b	ENSGT00390000009359.a	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477
Indian cobra	MODERN SPECIES	3	PPID (ENSNNAG00000005139)	ETFDH (ENSNNAG00000005076)	TMEM144 (ENSNNAG00000005011)	GASK1B (ENSNNAG00000004976)	GRIA2 (ENSNNAG00000004633)	GLRB (ENSNNAG00000004584)	PDGFC (ENSNNAG00000004572)	FGFBP1 (ENSNNAG00000004557)	ENSNNAG00000004437	ENSNNAG00000004399	TAPT1 (ENSNNAG00000004293)	TRMT44 (ENSNNAG00000004250)	ACOX3 (ENSNNAG00000003863)	ENSNNAG00000003796	ENSNNAG00000003770	ABLIM2 (ENSNNAG00000003730) ##22	ENSNNAG00000003713	FOXJ2 (ENSNNAG00000003653)	C3AR1 (ENSNNAG00000003632)	NECAP1 (ENSNNAG00000003610)	MSX1 (ENSNNAG00000003599)	STX18 (ENSNNAG00000003576)	NSG1 (ENSNNAG00000003545)	ENSNNAG00000003527	LYAR (ENSNNAG00000003516)	ENSNNAG00000003498	NKX3-2 (ENSNNAG00000003486)	ENSNNAG00000003436	ENSNNAG00000003425	ENSNNAG00000003420	C1QTNF7 (ENSNNAG00000003412)
Elapidae_a	ANCESTRAL SPECIES	148													ENSGT00390000000645	ENSGT00940000159423	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000160313	ENSGT00940000161053	ENSGT01100000263564.b	ENSGT00390000009359.a	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477
Acanthophiinae	ANCESTRAL SPECIES	135													ENSGT00390000000645	ENSGT00940000159423	ENSGT00530000063812.D	ENSGT00950000182850.a.b.a.a ##22	ENSGT00940000160313	ENSGT00940000161053	ENSGT01100000263564.b	ENSGT00390000009359.a	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750.w	ENSGT00390000003477
Mainland tiger snake	MODERN SPECIES	594													TRMT44 (ENSNSUG00000002116)	ACOX3 (ENSNSUG00000002109)	ENSNSUG00000001965	ABLIM2 (ENSNSUG00000001960) ##22	ENSNSUG00000001590	FOXJ2 (ENSNSUG00000001570)	C3AR1 (ENSNSUG00000001569)	NECAP1 (ENSNSUG00000001565)
Eastern brown snake	MODERN SPECIES	12	SLC2A9 (ENSPTXG00000005623)	ENSPTXG00000005625	WDR1 (ENSPTXG00000005626)	RAB28 (ENSPTXG00000005627)	NKX3-2 (ENSPTXG00000005628)	ENSPTXG00000005629	ENSPTXG00000005630	C1QTNF7 (ENSPTXG00000005639)	ENSPTXG00000005640	CC2D2A (ENSPTXG00000005643)	FBXL5 (ENSPTXG00000005652)	CD38 (ENSPTXG00000005654)	TRMT44 (ENSPTXG00000005656)	ACOX3 (ENSPTXG00000005751)	ENSPTXG00000005752	ABLIM2 (ENSPTXG00000005753) ##22	ENSPTXG00000005754	FOXJ2 (ENSPTXG00000005755)	C3AR1 (ENSPTXG00000005756)	NECAP1 (ENSPTXG00000005757)	MSX1 (ENSPTXG00000005758)	STX18 (ENSPTXG00000005759)	NSG1 (ENSPTXG00000005760)	ENSPTXG00000005761	ENSPTXG00000005762	LYAR (ENSPTXG00000005763)
Blue-lipped sea krait	MODERN SPECIES	7369																ABLIM2 (ENSLLTG00000016768) ##22	ENSLLTG00000016930
Lizard	MODERN SPECIES	850						MSANTD1 (ENSACAG00000044093)	ENSACAG00000005806	ENSACAG00000005758	ENSACAG00000005755	HMX1 (ENSACAG00000027749)	CPZ (ENSACAG00000012204)	TRMT44 (ENSACAG00000012152)	ACOX3 (ENSACAG00000012039)	HTRA3 (ENSACAG00000011912)	ENSACAG00000011803	ABLIM2 (ENSACAG00000011592) ##22	ENSACAG00000011337	ENSACAG00000040561	ENSACAG00000011293	C3AR1 (ENSACAG00000011272)	ENSACAG00000011134	ENSACAG00000042955	ENSACAG00000035199	ENSACAG00000011057	MSX1 (ENSACAG00000042172)	STX18 (ENSACAG00000011038)	NSG1 (ENSACAG00000035567)	ZBTB49 (ENSACAG00000010957)	ENSACAG00000042086	LYAR (ENSACAG00000028262)	ENSACAG00000041705
Mammalia	ANCESTRAL SPECIES	1	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c	ENSGT00390000003220
Platypus	MODERN SPECIES	15	GRK4 (ENSOANG00000021583)	HTT (ENSOANG00000041824)	MSANTD1 (ENSOANG00000041153)	RGS12 (ENSOANG00000015036)	HGFAC (ENSOANG00000048673)	DOK7 (ENSOANG00000040522)	LRPAP1 (ENSOANG00000043402)	ADRA2C (ENSOANG00000047040)	ENSOANG00000044173	CPZ (ENSOANG00000048753)	GPR78 (ENSOANG00000050536)	ENSOANG00000020584	ENSOANG00000037473	HTRA3 (ENSOANG00000038381)	ENSOANG00000039780	ABLIM2 (ENSOANG00000039436) ##22	AFAP1 (ENSOANG00000039955)	ENSOANG00000047288	SORCS2 (ENSOANG00000041261)	GRPEL1 (ENSOANG00000048425)	TADA2B (ENSOANG00000014275)	ENSOANG00000040715	KIAA0232 (ENSOANG00000039861)	PPP2R2C (ENSOANG00000048242)	WFS1 (ENSOANG00000039288)	JAKMIP1 (ENSOANG00000011472)	CRMP1 (ENSOANG00000020714)	ENSOANG00000048670	ENSOANG00000004350	STK32B (ENSOANG00000004349)	CYTL1 (ENSOANG00000042158)
Theria	ANCESTRAL SPECIES	6	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c	ENSGT00390000003220
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b
Opossum	MODERN SPECIES	4	MSANTD1 (ENSMODG00000003508)	ENSMODG00000003502	ENSMODG00000049174	HGFAC (ENSMODG00000003485)	DOK7 (ENSMODG00000003469)	LRPAP1 (ENSMODG00000003461)	ADRA2C (ENSMODG00000003290)	ENSMODG00000003283	ENSMODG00000043158	CPZ (ENSMODG00000003209)	GPR78 (ENSMODG00000003175)	ENSMODG00000039676	ACOX3 (ENSMODG00000003150)	HTRA3 (ENSMODG00000003113)	SH3TC1 (ENSMODG00000003098)	ABLIM2 (ENSMODG00000003062) ##22	AFAP1 (ENSMODG00000003012)	ENSMODG00000002968	ENSMODG00000037366	ENSMODG00000002955	TADA2B (ENSMODG00000043302)	ENSMODG00000013944	TBC1D14 (ENSMODG00000002932)	KIAA0232 (ENSMODG00000002906)	S100P (ENSMODG00000002897)	MAN2B2 (ENSMODG00000002889)	PPP2R2C (ENSMODG00000002866)	WFS1 (ENSMODG00000002825)	JAKMIP1 (ENSMODG00000002810)	ENSMODG00000029793	CRMP1 (ENSMODG00000001760)
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00530000063647.B.n	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b
Tasmanian devil	MODERN SPECIES	5	MSANTD1 (ENSSHAG00000027187)	RGS12 (ENSSHAG00000002156)	HGFAC (ENSSHAG00000001769)	DOK7 (ENSSHAG00000029804)	LRPAP1 (ENSSHAG00000014590)	ENSSHAG00000021069	ENSSHAG00000009037	ENSSHAG00000024016	CPZ (ENSSHAG00000002362)	GPR78 (ENSSHAG00000031228)	TRMT44 (ENSSHAG00000027526)	ENSSHAG00000027734	ENSSHAG00000016195	HTRA3 (ENSSHAG00000015806)	SH3TC1 (ENSSHAG00000015357)	ABLIM2 (ENSSHAG00000014165) ##22	AFAP1 (ENSSHAG00000012867)	SORCS2 (ENSSHAG00000031117)	ENSSHAG00000003330	GRPEL1 (ENSSHAG00000007667)	ENSSHAG00000007482	TADA2B (ENSSHAG00000031196)	TBC1D14 (ENSSHAG00000006157)	KIAA0232 (ENSSHAG00000004235)	ENSSHAG00000000132	ENSSHAG00000027596	ENSSHAG00000001652	ENSSHAG00000025526	ENSSHAG00000017856	DLC1 (ENSSHAG00000017773)	SGCZ (ENSSHAG00000016991)
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00530000063647.B.n	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b
Wallaby	MODERN SPECIES	6907																ABLIM2 (ENSMEUG00000007599) ##22
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000167254	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00530000063647.B.n	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b
Common wonbat	MODERN SPECIES	1054	GRK4 (ENSVURG00010021670)	HTT (ENSVURG00010021701)	MSANTD1 (ENSVURG00010021763)	RGS12 (ENSVURG00010021768)	HGFAC (ENSVURG00010021775)	DOK7 (ENSVURG00010021778)	LRPAP1 (ENSVURG00010021783)	ADRA2C (ENSVURG00010021786)	HMX1 (ENSVURG00010021792)	CPZ (ENSVURG00010021800)	GPR78 (ENSVURG00010021802)	TRMT44 (ENSVURG00010021809)	ACOX3 (ENSVURG00010021844)	HTRA3 (ENSVURG00010021852)	SH3TC1 (ENSVURG00010021859)	ABLIM2 (ENSVURG00010021886) ##22	AFAP1 (ENSVURG00010021912)	SORCS2 (ENSVURG00010021952)	ENSVURG00010022120	GRPEL1 (ENSVURG00010022126)	TADA2B (ENSVURG00010022133)	ENSVURG00010022142	TBC1D14 (ENSVURG00010022152)	KIAA0232 (ENSVURG00010022163)	ENSVURG00010022173	MAN2B2 (ENSVURG00010022178)	PPP2R2C (ENSVURG00010022192)	WFS1 (ENSVURG00010022202)	JAKMIP1 (ENSVURG00010022217)	CRMP1 (ENSVURG00010022248)	EVC (ENSVURG00010022280)
koala	MODERN SPECIES	43	HTT (ENSPCIG00000028525)	MSANTD1 (ENSPCIG00000028526)	RGS12 (ENSPCIG00000028527)	HGFAC (ENSPCIG00000028528)	DOK7 (ENSPCIG00000028529)	LRPAP1 (ENSPCIG00000028530)	ADRA2C (ENSPCIG00000014482)	ENSPCIG00000023618	ENSPCIG00000023620	CPZ (ENSPCIG00000023623)	ENSPCIG00000023628	TRMT44 (ENSPCIG00000023633)	ACOX3 (ENSPCIG00000023639)	HTRA3 (ENSPCIG00000023654)	SH3TC1 (ENSPCIG00000023664)	ABLIM2 (ENSPCIG00000001097) ##22	AFAP1 (ENSPCIG00000001025)	SORCS2 (ENSPCIG00000000411)	ENSPCIG00000006867	GRPEL1 (ENSPCIG00000019934)	TADA2B (ENSPCIG00000019936)	TBC1D14 (ENSPCIG00000025626)	KIAA0232 (ENSPCIG00000028370)	ENSPCIG00000028385	MAN2B2 (ENSPCIG00000028387)	PPP2R2C (ENSPCIG00000028392)	WFS1 (ENSPCIG00000020571)	JAKMIP1 (ENSPCIG00000018887)	ENSPCIG00000019163	CRMP1 (ENSPCIG00000019167)	EVC (ENSPCIG00000008820)
Eutheria	ANCESTRAL SPECIES	2	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c
Atlantogenata	DUPLICATION
Atlantogenata	ANCESTRAL SPECIES	131	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a.m ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a
Afrotheria	ANCESTRAL SPECIES	171	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a.m ##22	ENSGT00950000183067.a.a
Afrotheria_a	ANCESTRAL SPECIES	173	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a.m ##22	ENSGT00950000183067.a.a
Hyrax	MODERN SPECIES	4694																ABLIM2 (ENSPCAG00000008188) ##22
Elephant	MODERN SPECIES	164	SH3BP2 (ENSLAFG00000016902)	ADD1 (ENSLAFG00000028230)	ENSLAFG00000029996	NOP14 (ENSLAFG00000017989)	GRK4 (ENSLAFG00000015019)	HTT (ENSLAFG00000013021)	MSANTD1 (ENSLAFG00000032063)	RGS12 (ENSLAFG00000013706)	DOK7 (ENSLAFG00000020555)	LRPAP1 (ENSLAFG00000001667)	ENSLAFG00000032054	TRMT44 (ENSLAFG00000005046)	ACOX3 (ENSLAFG00000031250)	HTRA3 (ENSLAFG00000001907)	SH3TC1 (ENSLAFG00000016068)	ABLIM2 (ENSLAFG00000031132) ##22	AFAP1 (ENSLAFG00000028754)
Tenrec	MODERN SPECIES	5551																ENSETEG00000013288 ##22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.m ##22
Armadillo	MODERN SPECIES	4591																ENSDNOG00000043055 ##22
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.n ##22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a.n ##22
Armadillo	MODERN SPECIES	4296																ENSDNOG00000045262 ##22	ENSDNOG00000045654
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000160151	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c
Suina	ANCESTRAL SPECIES	33	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.o.a	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Pig	MODERN SPECIES	16	MFSD10 (ENSSSCG00000008695)	NOP14 (ENSSSCG00000008693)	GRK4 (ENSSSCG00000008694)	HTT (ENSSSCG00000008697)	MSANTD1 (ENSSSCG00000058478)	RGS12 (ENSSSCG00000008698)	HGFAC (ENSSSCG00000008700)	LRPAP1 (ENSSSCG00000008701)	ADRA2C (ENSSSCG00000008703)	HMX1 (ENSSSCG00000008720)	CPZ (ENSSSCG00000032151)	TRMT44 (ENSSSCG00000033873)	ACOX3 (ENSSSCG00000008724)	HTRA3 (ENSSSCG00000008723)	SH3TC1 (ENSSSCG00000008722)	ABLIM2 (ENSSSCG00000008721) ##22	AFAP1 (ENSSSCG00000023907)	SORCS2 (ENSSSCG00000037539)	PSAPL1 (ENSSSCG00000055134)	ENSSSCG00000037445	TADA2B (ENSSSCG00000029624)	ENSSSCG00000028085	ENSSSCG00000027349	BLOC1S4 (ENSSSCG00000059110)	ENSSSCG00000038829	ENSSSCG00000027746	MAN2B2 (ENSSSCG00000027178)	PPP2R2C (ENSSSCG00000008712)	WFS1 (ENSSSCG00000032452)	ENSSSCG00000034286	JAKMIP1 (ENSSSCG00000008710)
Chacoan peccary	MODERN SPECIES	962																ENSCWAG00000019151 ##22	AFAP1 (ENSCWAG00000019234)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Camelidae	ANCESTRAL SPECIES	22	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B
Arabian camel	MODERN SPECIES	11	ADD1 (ENSCDRG00005004116)	MFSD10 (ENSCDRG00005003971)	NOP14 (ENSCDRG00005003889)	GRK4 (ENSCDRG00005003589)	HTT (ENSCDRG00005002844)	MSANTD1 (ENSCDRG00005002625)	RGS12 (ENSCDRG00005002591)	HGFAC (ENSCDRG00005002564)	DOK7 (ENSCDRG00005002538)	LRPAP1 (ENSCDRG00005002510)	CPZ (ENSCDRG00005002249)	TRMT44 (ENSCDRG00005002204)	ACOX3 (ENSCDRG00005002157)	HTRA3 (ENSCDRG00005002125)	SH3TC1 (ENSCDRG00005002064)	ABLIM2 (ENSCDRG00005001968) ##22	AFAP1 (ENSCDRG00005001874)	PSAPL1 (ENSCDRG00005001861)	SORCS2 (ENSCDRG00005001824)	GRPEL1 (ENSCDRG00005001815)	TADA2B (ENSCDRG00005001800)	ENSCDRG00005001798	TBC1D14 (ENSCDRG00005001604)	KIAA0232 (ENSCDRG00005001561)	ENSCDRG00005001531	ENSCDRG00005001519	ENSCDRG00005001505	ENSCDRG00005001487	ENSCDRG00005001469	PPP2R2C (ENSCDRG00005001398)	WFS1 (ENSCDRG00005001375)
Artiodactyla_b	ANCESTRAL SPECIES	30	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00950000183337	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b
Cetacea	ANCESTRAL SPECIES	12	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.db.a	ENSGT01030000234638.b.a.b.r	ENSGT00940000157090	ENSGT00950000183174.B.a	ENSGT00390000002565	ENSGT00440000037338
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.db.b.a	ENSGT00940000157090	ENSGT00950000183174.B.a	ENSGT00390000002565.y.a	ENSGT00440000037338	ENSGT00940000154953	ENSGT00940000155249
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386.d	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.db.b.a	ENSGT00940000157090	ENSGT00950000183174.B.a	ENSGT00390000002565.y.a	ENSGT00440000037338	ENSGT00940000154953	ENSGT00940000155249
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386.d	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.db.b.a	ENSGT00940000157090	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00950000183174.B.a	ENSGT00390000002565.y.a	ENSGT00440000037338	ENSGT00940000154953
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386.d	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.db.b.a	ENSGT00940000157090	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00950000183174.B.a	ENSGT00390000002565.y.a	ENSGT00440000037338	ENSGT00940000154953
Narwhal	MODERN SPECIES	307	NOP14 (ENSMMNG00015007703)	ENSMMNG00015007674	HTT (ENSMMNG00015007552)	MSANTD1 (ENSMMNG00015007459)	RGS12 (ENSMMNG00015007391)	HGFAC (ENSMMNG00015007314)	DOK7 (ENSMMNG00015007268)	LRPAP1 (ENSMMNG00015007240)	ADRA2C (ENSMMNG00015007215)	HMX1 (ENSMMNG00015007199)	CPZ (ENSMMNG00015007134)	TRMT44 (ENSMMNG00015007067)	ACOX3 (ENSMMNG00015006993)	HTRA3 (ENSMMNG00015006949)	SH3TC1 (ENSMMNG00015006864)	ABLIM2 (ENSMMNG00015006708) ##22	AFAP1 (ENSMMNG00015006549)	SORCS2 (ENSMMNG00015006468)	GRPEL1 (ENSMMNG00015006417)	TADA2B (ENSMMNG00015006399)	CCDC96 (ENSMMNG00015006381)	TBC1D14 (ENSMMNG00015006306)	KIAA0232 (ENSMMNG00015006220)	BLOC1S4 (ENSMMNG00015006131)	ENSMMNG00015006115	RAB33B (ENSMMNG00015006101)	NAA15 (ENSMMNG00015006046)	ENSMMNG00015006008	MGARP (ENSMMNG00015005988)	ENSMMNG00015005969	ELF2 (ENSMMNG00015013677)
Beluga whale	MODERN SPECIES	77	ENSDLEG00000014878	ENSDLEG00000014875	HTT (ENSDLEG00000011397)	MSANTD1 (ENSDLEG00000011054)	RGS12 (ENSDLEG00000011012)	HGFAC (ENSDLEG00000019464)	DOK7 (ENSDLEG00000019424)	ENSDLEG00000019421	ADRA2C (ENSDLEG00000019419)	HMX1 (ENSDLEG00000019416)	CPZ (ENSDLEG00000019412)	TRMT44 (ENSDLEG00000019402)	ACOX3 (ENSDLEG00000019342)	HTRA3 (ENSDLEG00000019321)	SH3TC1 (ENSDLEG00000019312)	ABLIM2 (ENSDLEG00000019228) ##22	AFAP1 (ENSDLEG00000019189)	SORCS2 (ENSDLEG00000019131)	GRPEL1 (ENSDLEG00000019119)	TADA2B (ENSDLEG00000019117)	CCDC96 (ENSDLEG00000019112)	TBC1D14 (ENSDLEG00000019083)	KIAA0232 (ENSDLEG00000019074)	BLOC1S4 (ENSDLEG00000019071)	ENSDLEG00000019068	RAB33B (ENSDLEG00000019066)	ENSDLEG00000019063	NAA15 (ENSDLEG00000019037)	ENSDLEG00000019031	MGARP (ENSDLEG00000019030)	ELF2 (ENSDLEG00000019002)
Vaquita	MODERN SPECIES	16	HTT (ENSPSNG00000000530)	ENSPSNG00000000712	MSANTD1 (ENSPSNG00000000749)	RGS12 (ENSPSNG00000000810)	HGFAC (ENSPSNG00000000872)	ENSPSNG00000000926	ENSPSNG00000000951	ENSPSNG00000000974	ADRA2C (ENSPSNG00000001008)	HMX1 (ENSPSNG00000001020)	CPZ (ENSPSNG00000001074)	TRMT44 (ENSPSNG00000001139)	ACOX3 (ENSPSNG00000001193)	HTRA3 (ENSPSNG00000001248)	SH3TC1 (ENSPSNG00000001295)	ABLIM2 (ENSPSNG00000001662) ##22	AFAP1 (ENSPSNG00000002106)	SORCS2 (ENSPSNG00000002142)	GRPEL1 (ENSPSNG00000002191)	TADA2B (ENSPSNG00000002208)	CCDC96 (ENSPSNG00000002230)	TBC1D14 (ENSPSNG00000002281)	KIAA0232 (ENSPSNG00000002420)	BLOC1S4 (ENSPSNG00000002460)	ENSPSNG00000002467	RAB33B (ENSPSNG00000002479)	ENSPSNG00000002493	NAA15 (ENSPSNG00000002515)	ENSPSNG00000002536	MGARP (ENSPSNG00000002547)	ELF2 (ENSPSNG00000002585)
Dolphin	MODERN SPECIES	2360														HTRA3 (ENSTTRG00000003897)	SH3TC1 (ENSTTRG00000003885)	ABLIM2 (ENSTTRG00000003864) ##22	AFAP1 (ENSTTRG00000003841)	SORCS2 (ENSTTRG00000003803)
Sperm whale	MODERN SPECIES	18	ENSPCTG00005018578	ENSPCTG00005018521	ENSPCTG00005018492	HTT (ENSPCTG00005017818)	MSANTD1 (ENSPCTG00005017696)	RGS12 (ENSPCTG00005017623)	HGFAC (ENSPCTG00005017292)	DOK7 (ENSPCTG00005017177)	LRPAP1 (ENSPCTG00005017137)	ADRA2C (ENSPCTG00005017090)	HMX1 (ENSPCTG00005017053)	CPZ (ENSPCTG00005016872)	TRMT44 (ENSPCTG00005016606)	ACOX3 (ENSPCTG00005016523)	ENSPCTG00005016460	ENSPCTG00005016281 ##22	AFAP1 (ENSPCTG00005015990)	SORCS2 (ENSPCTG00005015247)	GRPEL1 (ENSPCTG00005015078)	TADA2B (ENSPCTG00005015010)	CCDC96 (ENSPCTG00005014994)	TBC1D14 (ENSPCTG00005014818)	KIAA0232 (ENSPCTG00005014740)	ENSPCTG00005014714	ENSPCTG00005014639	RAB33B (ENSPCTG00005014600)	ENSPCTG00005014565	NAA15 (ENSPCTG00005014457)	NDUFC1 (ENSPCTG00005014424)	MGARP (ENSPCTG00005014383)	ELF2 (ENSPCTG00005013935)
Blue whale	MODERN SPECIES	16	GRK4 (ENSBMSG00010009184)	ENSBMSG00010009064	HTT (ENSBMSG00010009010)	MSANTD1 (ENSBMSG00010008984)	RGS12 (ENSBMSG00010008788)	HGFAC (ENSBMSG00010008732)	DOK7 (ENSBMSG00010008705)	LRPAP1 (ENSBMSG00010008696)	ADRA2C (ENSBMSG00010008691)	HMX1 (ENSBMSG00010008686)	CPZ (ENSBMSG00010008653)	TRMT44 (ENSBMSG00010008602)	ACOX3 (ENSBMSG00010008584)	HTRA3 (ENSBMSG00010008566)	SH3TC1 (ENSBMSG00010008538)	ABLIM2 (ENSBMSG00010007465) ##22	AFAP1 (ENSBMSG00010007315)	ENSBMSG00010007301	SORCS2 (ENSBMSG00010007238)	ENSBMSG00010007222	ENSBMSG00010007211	TADA2B (ENSBMSG00010007190)	ENSBMSG00010007181	TBC1D14 (ENSBMSG00010007109)	KIAA0232 (ENSBMSG00010007070)	BLOC1S4 (ENSBMSG00010007051)	ENSBMSG00010007023	ENSBMSG00010007008	RAB33B (ENSBMSG00010006989)	NAA15 (ENSBMSG00010006960)	ENSBMSG00010006938
Pecora	ANCESTRAL SPECIES	15	ENSGT00960000190697	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.a	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Yarkand deer	MODERN SPECIES	29	ENSCHYG00000024729	ENSCHYG00000024585	NOP14 (ENSCHYG00000024534)	GRK4 (ENSCHYG00000024289)	HTT (ENSCHYG00000023889)	MSANTD1 (ENSCHYG00000023764)	RGS12 (ENSCHYG00000023405)	DOK7 (ENSCHYG00000023263)	ENSCHYG00000023167	ENSCHYG00000023148	CPZ (ENSCHYG00000023015)	TRMT44 (ENSCHYG00000022951)	ACOX3 (ENSCHYG00000022776)	HTRA3 (ENSCHYG00000022643)	SH3TC1 (ENSCHYG00000022378)	ABLIM2 (ENSCHYG00000020931) ##22	AFAP1 (ENSCHYG00000020461)	ENSCHYG00000020420	PSAPL1 (ENSCHYG00000020393)	SORCS2 (ENSCHYG00000019915)	GRPEL1 (ENSCHYG00000019821)	ENSCHYG00000019763	ENSCHYG00000019740	TBC1D14 (ENSCHYG00000019146)	KIAA0232 (ENSCHYG00000018708)	ENSCHYG00000018646	ENSCHYG00000018589	BLOC1S4 (ENSCHYG00000018565)	ENSCHYG00000018541	ENSCHYG00000018414	ENSCHYG00000016693
Percora_a	ANCESTRAL SPECIES	18	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263828	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.c.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Siberian musk deer	MODERN SPECIES	1272					ENSMMSG00000018625	DOK7 (ENSMMSG00000018780)	LRPAP1 (ENSMMSG00000018820)	ENSMMSG00000018846	ADRA2C (ENSMMSG00000018915)	HMX1 (ENSMMSG00000018929)	CPZ (ENSMMSG00000018959)	TRMT44 (ENSMMSG00000019083)	ACOX3 (ENSMMSG00000019148)	HTRA3 (ENSMMSG00000019212)	SH3TC1 (ENSMMSG00000019253)	ABLIM2 (ENSMMSG00000019368) ##22	AFAP1 (ENSMMSG00000019516)	SORCS2 (ENSMMSG00000019625)	PSAPL1 (ENSMMSG00000019730)	ENSMMSG00000019734	ENSMMSG00000019744	ENSMMSG00000019761	TBC1D14 (ENSMMSG00000019790)	KIAA0232 (ENSMMSG00000019984)	ENSMMSG00000020014	ENSMMSG00000020026	ENSMMSG00000020063	CLRN2 (ENSMMSG00000020425)	QDPR (ENSMMSG00000020473)	ENSMMSG00000020553	LDB2 (ENSMMSG00000020581)
Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d	ENSGT01030000234638.b.a.b.q.b.c.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000160151	ENSGT00390000015863.i	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a.t	ENSGT01030000234563.b.a.a.s	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.a.a.a	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d	ENSGT01030000234638.b.a.b.q.b.c.a	ENSGT00850000132319.a.a.b
Rambouillet Sheep	MODERN SPECIES	22	NOP14 (ENSOARG00020021463)	GRK4 (ENSOARG00020021071)	HTT (ENSOARG00020020229)	MSANTD1 (ENSOARG00020020116)	RGS12 (ENSOARG00020019415)	HGFAC (ENSOARG00020019211)	DOK7 (ENSOARG00020019127)	LRPAP1 (ENSOARG00020019028)	ADRA2C (ENSOARG00020018999)	HMX1 (ENSOARG00020018963)	CPZ (ENSOARG00020018772)	ENSOARG00020018563	ACOX3 (ENSOARG00020018378)	HTRA3 (ENSOARG00020018235)	SH3TC1 (ENSOARG00020017981)	ABLIM2 (ENSOARG00020012027) ##22	AFAP1 (ENSOARG00020011241)	PSAPL1 (ENSOARG00020011199)	SORCS2 (ENSOARG00020010444)	GRPEL1 (ENSOARG00020010391)	ENSOARG00020010320	ENSOARG00020010297	TBC1D14 (ENSOARG00020009685)	KIAA0232 (ENSOARG00020009528)	BLOC1S4 (ENSOARG00020009507)	ENSOARG00020009488	ENSOARG00020009021	ENSOARG00020008117	ENSOARG00020007096	ENSOARG00020006164	CLRN2 (ENSOARG00020006122)
Goat	MODERN SPECIES	25	TMEM129 (ENSCHIG00000024846)	SLBP (ENSCHIG00000019364)	ENSCHIG00000013117	HGFAC (ENSCHIG00000026186)	RGS12 (ENSCHIG00000019778)	LRPAP1 (ENSCHIG00000012569)	ENSCHIG00000024026	ADRA2C (ENSCHIG00000008674)	HMX1 (ENSCHIG00000012036)	CPZ (ENSCHIG00000022665)	TRMT44 (ENSCHIG00000019204)	ENSCHIG00000004823	ACOX3 (ENSCHIG00000015179)	HTRA3 (ENSCHIG00000023003)	SH3TC1 (ENSCHIG00000009657)	ABLIM2 (ENSCHIG00000019315) ##22	AFAP1 (ENSCHIG00000006390)	ENSCHIG00000018509	PSAPL1 (ENSCHIG00000004800)	ENSCHIG00000017846	GRPEL1 (ENSCHIG00000026236)	ENSCHIG00000017445	ENSCHIG00000009998	TBC1D14 (ENSCHIG00000015595)	KIAA0232 (ENSCHIG00000018335)	BLOC1S4 (ENSCHIG00000008679)	ENSCHIG00000008557	ENSCHIG00000014705	ENSCHIG00000025479	ENSCHIG00000016572	ENSCHIG00000011403
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000002245	ENSGT00940000159741.t	ENSGT00940000159741.s	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d.b	ENSGT01030000234638.b.a.b.q.b.d.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470
American bison	MODERN SPECIES	3256															ENSBBBG00000009544	ABLIM2 (ENSBBBG00000001546) ##22	AFAP1 (ENSBBBG00000009531)	SORCS2 (ENSBBBG00000009511)	ENSBBBG00000009500	GRPEL1 (ENSBBBG00000006822)	ENSBBBG00000009496	TBC1D14 (ENSBBBG00000009490)	ENSBBBG00000009476	BLOC1S4 (ENSBBBG00000007870)	ENSBBBG00000025475	ENSBBBG00000025433	ENSBBBG00000008084
Bos	ANCESTRAL SPECIES	15	ENSGT00390000002245	ENSGT00940000159741.t	ENSGT00940000159741.s	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855.c	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d.b	ENSGT01030000234638.b.a.b.q.b.d.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Bos_a	ANCESTRAL SPECIES	61	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741.s	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855.c	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b
Wild yak	MODERN SPECIES	2762														HTRA3 (ENSBMUG00000011043)	SH3TC1 (ENSBMUG00000010888)	ABLIM2 (ENSBMUG00000010798) ##22
Domestic yak	MODERN SPECIES	25	NOP14 (ENSBGRG00000014192)	GRK4 (ENSBGRG00000013724)	HTT (ENSBGRG00000008977)	MSANTD1 (ENSBGRG00000008700)	ENSBGRG00000008554	HGFAC (ENSBGRG00000008451)	DOK7 (ENSBGRG00000008376)	LRPAP1 (ENSBGRG00000008251)	ENSBGRG00000008212	HMX1 (ENSBGRG00000010610)	CPZ (ENSBGRG00000010490)	TRMT44 (ENSBGRG00000010431)	ACOX3 (ENSBGRG00000009913)	HTRA3 (ENSBGRG00000009786)	SH3TC1 (ENSBGRG00000009550)	ABLIM2 (ENSBGRG00000008458) ##22	AFAP1 (ENSBGRG00000008121)	PSAPL1 (ENSBGRG00000008033)	SORCS2 (ENSBGRG00000006748)	ENSBGRG00000006693	ENSBGRG00000006688	GRPEL1 (ENSBGRG00000006663)	ENSBGRG00000006635	ENSBGRG00000006619	TBC1D14 (ENSBGRG00000006353)	ENSBGRG00000006283	KIAA0232 (ENSBGRG00000006253)	BLOC1S4 (ENSBGRG00000006240)	ENSBGRG00000006229	ENSBGRG00000006130
Bos_b	ANCESTRAL SPECIES	14	ENSGT00390000002245	ENSGT00940000159741.t	ENSGT00940000159741.s	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855.c	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d.b	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Cow	MODERN SPECIES	25	HTT (ENSBTAG00000001506)	MSANTD1 (ENSBTAG00000003776)	ENSBTAG00000052058	ENSBTAG00000052328	ENSBTAG00000016714	HGFAC (ENSBTAG00000017335)	DOK7 (ENSBTAG00000009742)	LRPAP1 (ENSBTAG00000000073)	ADRA2C (ENSBTAG00000045994)	HMX1 (ENSBTAG00000031197)	CPZ (ENSBTAG00000014803)	TRMT44 (ENSBTAG00000004797)	ACOX3 (ENSBTAG00000004893)	HTRA3 (ENSBTAG00000047613)	SH3TC1 (ENSBTAG00000047876)	ABLIM2 (ENSBTAG00000015926) ##22	AFAP1 (ENSBTAG00000012464)	SORCS2 (ENSBTAG00000027434)	GRPEL1 (ENSBTAG00000010181)	TADA2B (ENSBTAG00000010185)	CCDC96 (ENSBTAG00000047810)	TBC1D14 (ENSBTAG00000005493)	KIAA0232 (ENSBTAG00000019427)	BLOC1S4 (ENSBTAG00000003766)	MRFAP1L1 (ENSBTAG00000046936)	ENSBTAG00000049123	ENSBTAG00000019584	ENSBTAG00000027825	CLRN2 (ENSBTAG00000003357)	QDPR (ENSBTAG00000040333)	LDB2 (ENSBTAG00000014058)
Hybrid Bos Indicus	MODERN SPECIES	25	NOP14 (ENSBIXG00005009826)	GRK4 (ENSBIXG00005010030)	HTT (ENSBIXG00005006419)	MSANTD1 (ENSBIXG00005010285)	RGS12 (ENSBIXG00005010377)	DOK7 (ENSBIXG00005010412)	ENSBIXG00005010446	ENSBIXG00005010466	ADRA2C (ENSBIXG00005010512)	HMX1 (ENSBIXG00005010552)	CPZ (ENSBIXG00005000693)	TRMT44 (ENSBIXG00005010670)	ACOX3 (ENSBIXG00005010819)	HTRA3 (ENSBIXG00005000973)	SH3TC1 (ENSBIXG00005000986)	ABLIM2 (ENSBIXG00005001027) ##22	ENSBIXG00005001052	AFAP1 (ENSBIXG00005011288)	PSAPL1 (ENSBIXG00005011305)	SORCS2 (ENSBIXG00005011360)	ENSBIXG00005001113	ENSBIXG00005011501	ENSBIXG00005011511	ENSBIXG00005005918	KIAA0232 (ENSBIXG00005001164)	BLOC1S4 (ENSBIXG00005001177)	ENSBIXG00005011841	ENSBIXG00005012224	ENSBIXG00005005481	ENSBIXG00005012673	CLRN2 (ENSBIXG00005005831)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Canidae	ANCESTRAL SPECIES	21	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.m	ENSGT01030000234638.b.a.b.n	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00940000159422
Red fox	MODERN SPECIES	1	MFSD10 (ENSVVUG00000023927)	NOP14 (ENSVVUG00000023936)	GRK4 (ENSVVUG00000023942)	ENSVVUG00000023970	HTT (ENSVVUG00000024096)	MSANTD1 (ENSVVUG00000024948)	RGS12 (ENSVVUG00000024952)	HGFAC (ENSVVUG00000024961)	DOK7 (ENSVVUG00000025017)	LRPAP1 (ENSVVUG00000025019)	CPZ (ENSVVUG00000025033)	TRMT44 (ENSVVUG00000025044)	ACOX3 (ENSVVUG00000025052)	HTRA3 (ENSVVUG00000025060)	SH3TC1 (ENSVVUG00000025067)	ABLIM2 (ENSVVUG00000025103) ##22	AFAP1 (ENSVVUG00000000026)	SORCS2 (ENSVVUG00000000041)	GRPEL1 (ENSVVUG00000000058)	TADA2B (ENSVVUG00000000081)	ENSVVUG00000000096	TBC1D14 (ENSVVUG00000000192)	KIAA0232 (ENSVVUG00000000302)	BLOC1S4 (ENSVVUG00000000395)	S100P (ENSVVUG00000000444)	ENSVVUG00000000473	ENSVVUG00000000501	ENSVVUG00000000562	ENSVVUG00000000613	PPP2R2C (ENSVVUG00000001098)	CRABP1 (ENSVVUG00000001115)
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00950000183198.c.a.b.a.a	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.m	ENSGT01030000234638.b.a.b.n	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00940000159422
Dingo	MODERN SPECIES	138	ENSCAFG00020012783	HTT (ENSCAFG00020012904)	MSANTD1 (ENSCAFG00020014619)	RGS12 (ENSCAFG00020014622)	HGFAC (ENSCAFG00020014624)	DOK7 (ENSCAFG00020014626)	LRPAP1 (ENSCAFG00020014629)	ADRA2C (ENSCAFG00020014633)	HMX1 (ENSCAFG00020014639)	CPZ (ENSCAFG00020014642)	TRMT44 (ENSCAFG00020014653)	ENSCAFG00020014681	ACOX3 (ENSCAFG00020014686)	HTRA3 (ENSCAFG00020014735)	SH3TC1 (ENSCAFG00020014736)	ABLIM2 (ENSCAFG00020014758) ##22	AFAP1 (ENSCAFG00020014815)	SORCS2 (ENSCAFG00020014834)	ENSCAFG00020014970	GRPEL1 (ENSCAFG00020014974)	TADA2B (ENSCAFG00020014977)	ENSCAFG00020014980	TBC1D14 (ENSCAFG00020014982)	KIAA0232 (ENSCAFG00020014988)	BLOC1S4 (ENSCAFG00020015002)	S100P (ENSCAFG00020015006)	ENSCAFG00020015008	ENSCAFG00020015024	ENSCAFG00020015026	ENSCAFG00020015037	ENSCAFG00020015112
Dog	MODERN SPECIES	22	HTT (ENSCAFG00845011174)	HTT (ENSCAFG00845011109)	HGFAC (ENSCAFG00845011005)	HGFAC (ENSCAFG00845010920)	ENSCAFG00845010871	HGFAC (ENSCAFG00845010777)	LRPAP1 (ENSCAFG00845010689)	ENSCAFG00845010654	HMX1 (ENSCAFG00845010633)	CPZ (ENSCAFG00845010568)	TRMT44 (ENSCAFG00845010510)	ENSCAFG00845010480	ACOX3 (ENSCAFG00845010178)	HTRA3 (ENSCAFG00845010076)	SH3TC1 (ENSCAFG00845009957)	ABLIM2 (ENSCAFG00845009215) ##22	AFAP1 (ENSCAFG00845008918)	SORCS2 (ENSCAFG00845008589)	GRPEL1 (ENSCAFG00845008512)	TADA2B (ENSCAFG00845008475)	ENSCAFG00845008449	TBC1D14 (ENSCAFG00845008035)	BLOC1S4 (ENSCAFG00845007877)	S100P (ENSCAFG00845007858)	ENSCAFG00845007818	MRFAP1 (ENSCAFG00845007784)	ENSCAFG00845007718	ENSCAFG00845007645	PPP2R2C (ENSCAFG00845007569)	ENSCAFG00845007506	WDR61 (ENSCAFG00845007438)
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Mustelinae	ANCESTRAL SPECIES	69	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
American mink	MODERN SPECIES	139	GRK4 (ENSNVIG00000001210)	HTT (ENSNVIG00000001469)	MSANTD1 (ENSNVIG00000005202)	ENSNVIG00000005214	ENSNVIG00000005232	HGFAC (ENSNVIG00000005255)	ENSNVIG00000005312	LRPAP1 (ENSNVIG00000005321)	HMX1 (ENSNVIG00000005343)	CPZ (ENSNVIG00000005357)	TRMT44 (ENSNVIG00000005444)	ACOX3 (ENSNVIG00000005462)	HTRA3 (ENSNVIG00000005532)	SH3TC1 (ENSNVIG00000005580)	ENSNVIG00000005654	ABLIM2 (ENSNVIG00000005686) ##22	ENSNVIG00000006127	AFAP1 (ENSNVIG00000006148)	SORCS2 (ENSNVIG00000006257)	GRPEL1 (ENSNVIG00000006297)	TADA2B (ENSNVIG00000006308)	ENSNVIG00000006315	TBC1D14 (ENSNVIG00000006343)	KIAA0232 (ENSNVIG00000006465)	BLOC1S4 (ENSNVIG00000006492)	ENSNVIG00000006498	S100P (ENSNVIG00000006501)	ENSNVIG00000006512	ENSNVIG00000006515	ENSNVIG00000006525
Ferret	MODERN SPECIES	334	MFSD10 (ENSMPUG00000010909)	NOP14 (ENSMPUG00000010899)	GRK4 (ENSMPUG00000010706)	HTT (ENSMPUG00000010698)	MSANTD1 (ENSMPUG00000010693)	RGS12 (ENSMPUG00000010690)	HGFAC (ENSMPUG00000010585)	DOK7 (ENSMPUG00000010576)	LRPAP1 (ENSMPUG00000010570)	ENSMPUG00000010565	CPZ (ENSMPUG00000010557)	TRMT44 (ENSMPUG00000010536)	ACOX3 (ENSMPUG00000010527)	HTRA3 (ENSMPUG00000010519)	SH3TC1 (ENSMPUG00000010511)	ABLIM2 (ENSMPUG00000010499) ##22	AFAP1 (ENSMPUG00000010492)	SORCS2 (ENSMPUG00000010476)	ENSMPUG00000010471	TADA2B (ENSMPUG00000010456)	TBC1D14 (ENSMPUG00000010445)	KIAA0232 (ENSMPUG00000010437)	BLOC1S4 (ENSMPUG00000019112)
Ursidae	ANCESTRAL SPECIES	29	ENSGT00940000164295	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151.g	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785	ENSGT00940000153713.B.c
Ursus	ANCESTRAL SPECIES	105	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151.g	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT00940000155541.B
Polar bear	MODERN SPECIES	111	SH3BP2 (ENSUMAG00000006627)	ENSUMAG00000006661	ENSUMAG00000006673	NOP14 (ENSUMAG00000006697)	GRK4 (ENSUMAG00000006953)	HTT (ENSUMAG00000008320)	MSANTD1 (ENSUMAG00000009714)	RGS12 (ENSUMAG00000009717)	HGFAC (ENSUMAG00000009730)	LRPAP1 (ENSUMAG00000009747)	CPZ (ENSUMAG00000009774)	TRMT44 (ENSUMAG00000009816)	ACOX3 (ENSUMAG00000009883)	HTRA3 (ENSUMAG00000010208)	SH3TC1 (ENSUMAG00000010239)	ABLIM2 (ENSUMAG00000010333) ##22	AFAP1 (ENSUMAG00000010787)	SORCS2 (ENSUMAG00000010954)	GRPEL1 (ENSUMAG00000010977)	TADA2B (ENSUMAG00000010984)	TBC1D14 (ENSUMAG00000010991)	KIAA0232 (ENSUMAG00000011003)	BLOC1S4 (ENSUMAG00000011027)	ENSUMAG00000011029	ENSUMAG00000011034
American black bear	MODERN SPECIES	558																ABLIM2 (ENSUAMG00000013677) ##22	AFAP1 (ENSUAMG00000014056)	SORCS2 (ENSUAMG00000014345)
Giant Panda	MODERN SPECIES	2	ADD1 (ENSAMEG00000014449)	MFSD10 (ENSAMEG00000014523)	NOP14 (ENSAMEG00000014547)	GRK4 (ENSAMEG00000014586)	HTT (ENSAMEG00000014658)	MSANTD1 (ENSAMEG00000027262)	RGS12 (ENSAMEG00000014786)	HGFAC (ENSAMEG00000014815)	DOK7 (ENSAMEG00000024474)	ENSAMEG00000014853	ENSAMEG00000014899	TRMT44 (ENSAMEG00000014919)	ACOX3 (ENSAMEG00000014936)	HTRA3 (ENSAMEG00000014991)	SH3TC1 (ENSAMEG00000025685)	ABLIM2 (ENSAMEG00000015072) ##22	AFAP1 (ENSAMEG00000006201)	SORCS2 (ENSAMEG00000006150)	GRPEL1 (ENSAMEG00000028793)	TADA2B (ENSAMEG00000008308)	ENSAMEG00000008315	TBC1D14 (ENSAMEG00000008316)	KIAA0232 (ENSAMEG00000008363)	BLOC1S4 (ENSAMEG00000008378)	ENSAMEG00000023739	S100P (ENSAMEG00000008381)	ENSAMEG00000028799	ENSAMEG00000020044	PPP2R2C (ENSAMEG00000010920)	WFS1 (ENSAMEG00000010926)	ENSAMEG00000026053
Felidae	ANCESTRAL SPECIES	4	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B	ENSGT00940000154127.A
Panthera	ANCESTRAL SPECIES	5	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.w.b	ENSGT00940000155541.B	ENSGT00940000162871	ENSGT00940000155541.C.w.a	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c
Tiger	MODERN SPECIES	68												ENSPTIG00000015060	CPZ (ENSPTIG00000013611)	ENSPTIG00000013080	ACOX3 (ENSPTIG00000011467)	ENSPTIG00000010844 ##22	AFAP1 (ENSPTIG00000008059)	SORCS2 (ENSPTIG00000005430)	GRPEL1 (ENSPTIG00000005227)	TADA2B (ENSPTIG00000005032)	ENSPTIG00000002658	TBC1D14 (ENSPTIG00000020235)	KIAA0232 (ENSPTIG00000017817)	BLOC1S4 (ENSPTIG00000002785)	ENSPTIG00000002754	PPP2R2C (ENSPTIG00000016012)	WFS1 (ENSPTIG00000015610)	JAKMIP1 (ENSPTIG00000013914)	ENSPTIG00000013627	CRMP1 (ENSPTIG00000012758)	EVC (ENSPTIG00000011400)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.w.b	ENSGT00940000155541.B.c	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b
lion	MODERN SPECIES	4	NOP14 (ENSPLOG00000003997)	ENSPLOG00000003978	GRK4 (ENSPLOG00000003900)	HTT (ENSPLOG00000003788)	MSANTD1 (ENSPLOG00000003674)	RGS12 (ENSPLOG00000003568)	HGFAC (ENSPLOG00000003505)	DOK7 (ENSPLOG00000003465)	LRPAP1 (ENSPLOG00000003425)	ADRA2C (ENSPLOG00000003403)	CPZ (ENSPLOG00000003386)	TRMT44 (ENSPLOG00000003365)	ACOX3 (ENSPLOG00000003334)	HTRA3 (ENSPLOG00000003274)	SH3TC1 (ENSPLOG00000003184)	ABLIM2 (ENSPLOG00000002684) ##22	AFAP1 (ENSPLOG00000002258)	GRPEL1 (ENSPLOG00000002205)	TADA2B (ENSPLOG00000002191)	ENSPLOG00000002175	TBC1D14 (ENSPLOG00000002050)	KIAA0232 (ENSPLOG00000001930)	BLOC1S4 (ENSPLOG00000001909)	ENSPLOG00000001900	S100P (ENSPLOG00000001889)	ENSPLOG00000001878	ENSPLOG00000001864	ENSPLOG00000001852	PPP2R2C (ENSPLOG00000001809)	WFS1 (ENSPLOG00000001709)	JAKMIP1 (ENSPLOG00000001633)
leopard	MODERN SPECIES	25	ENSPPRG00000001525	GRK4 (ENSPPRG00000004398)	HTT (ENSPPRG00000008717)	MSANTD1 (ENSPPRG00000010491)	RGS12 (ENSPPRG00000014281)	HGFAC (ENSPPRG00000020547)	DOK7 (ENSPPRG00000021690)	LRPAP1 (ENSPPRG00000022560)	ADRA2C (ENSPPRG00000023307)	HMX1 (ENSPPRG00000023236)	CPZ (ENSPPRG00000000157)	TRMT44 (ENSPPRG00000001613)	ACOX3 (ENSPPRG00000003521)	HTRA3 (ENSPPRG00000005071)	SH3TC1 (ENSPPRG00000005952)	ABLIM2 (ENSPPRG00000019420) ##22	AFAP1 (ENSPPRG00000002919)	SORCS2 (ENSPPRG00000003995)	GRPEL1 (ENSPPRG00000004353)	TADA2B (ENSPPRG00000004710)	ENSPPRG00000017005	ENSPPRG00000005104	TBC1D14 (ENSPPRG00000007356)	KIAA0232 (ENSPPRG00000007996)	BLOC1S4 (ENSPPRG00000017163)	ENSPPRG00000017176	S100P (ENSPPRG00000008483)	ENSPPRG00000017187	PPP2R2C (ENSPPRG00000012126)	WFS1 (ENSPPRG00000012817)	JAKMIP1 (ENSPPRG00000024637)
Cat	MODERN SPECIES	235	GRK4 (ENSFCAG00000023067)	HTT (ENSFCAG00000004607)	MSANTD1 (ENSFCAG00000004611)	RGS12 (ENSFCAG00000004612)	HGFAC (ENSFCAG00000012646)	DOK7 (ENSFCAG00000012716)	LRPAP1 (ENSFCAG00000028599)	ENSFCAG00000047516	ADRA2C (ENSFCAG00000023309)	HMX1 (ENSFCAG00000045042)	CPZ (ENSFCAG00000015298)	TRMT44 (ENSFCAG00000015295)	ACOX3 (ENSFCAG00000015294)	HTRA3 (ENSFCAG00000015293)	SH3TC1 (ENSFCAG00000046348)	ABLIM2 (ENSFCAG00000015291) ##22	AFAP1 (ENSFCAG00000015289)	SORCS2 (ENSFCAG00000015288)	GRPEL1 (ENSFCAG00000041754)	TADA2B (ENSFCAG00000010027)	KIAA0232 (ENSFCAG00000010024)	BLOC1S4 (ENSFCAG00000004290)	ENSFCAG00000010023	S100P (ENSFCAG00000044457)	ENSFCAG00000046639	ENSFCAG00000043532	ENSFCAG00000053431	PPP2R2C (ENSFCAG00000006161)	WFS1 (ENSFCAG00000040449)	JAKMIP1 (ENSFCAG00000004079)	C4orf50 (ENSFCAG00000004078)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928
Megabat	MODERN SPECIES	1869															SH3TC1 (ENSPVAG00000005479)	ABLIM2 (ENSPVAG00000005478) ##22
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928
Greater horseshoe bat	MODERN SPECIES	23	ENSRFEG00010008607	GRK4 (ENSRFEG00010008411)	HTT (ENSRFEG00010007650)	MSANTD1 (ENSRFEG00010007510)	RGS12 (ENSRFEG00010007497)	HGFAC (ENSRFEG00010007433)	DOK7 (ENSRFEG00010007323)	LRPAP1 (ENSRFEG00010007276)	ADRA2C (ENSRFEG00010007225)	HMX1 (ENSRFEG00010007198)	CPZ (ENSRFEG00010006985)	TRMT44 (ENSRFEG00010006921)	ACOX3 (ENSRFEG00010006855)	HTRA3 (ENSRFEG00010006798)	SH3TC1 (ENSRFEG00010006738)	ABLIM2 (ENSRFEG00010006470) ##22	AFAP1 (ENSRFEG00010006280)	PSAPL1 (ENSRFEG00010006259)	SORCS2 (ENSRFEG00010006085)	GRPEL1 (ENSRFEG00010005941)	TADA2B (ENSRFEG00010005900)	ENSRFEG00010005879	TBC1D14 (ENSRFEG00010005763)	KIAA0232 (ENSRFEG00010005655)	BLOC1S4 (ENSRFEG00010005617)	MRFAP1L1 (ENSRFEG00010005604)	S100P (ENSRFEG00010005592)	ENSRFEG00010005580	ENSRFEG00010005566	PPP2R2C (ENSRFEG00010005525)	WFS1 (ENSRFEG00010005481)
Microbat	MODERN SPECIES	1846																ABLIM2 (ENSMLUG00000004921) ##22	AFAP1 (ENSMLUG00000006740)
Equus	ANCESTRAL SPECIES	12	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C.y	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C.z	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Horse	MODERN SPECIES	22	GRK4 (ENSECAG00000018979)	HTT (ENSECAG00000008684)	MSANTD1 (ENSECAG00000008424)	RGS12 (ENSECAG00000019746)	HGFAC (ENSECAG00000019001)	DOK7 (ENSECAG00000017927)	LRPAP1 (ENSECAG00000014825)	HMX1 (ENSECAG00000032622)	ENSECAG00000057404	ENSECAG00000036844	CPZ (ENSECAG00000012887)	TRMT44 (ENSECAG00000011958)	ACOX3 (ENSECAG00000008588)	HTRA3 (ENSECAG00000000727)	SH3TC1 (ENSECAG00000020879)	ABLIM2 (ENSECAG00000016485) ##22	AFAP1 (ENSECAG00000013779)	PSAPL1 (ENSECAG00000013584)	SORCS2 (ENSECAG00000009779)	GRPEL1 (ENSECAG00000009669)	TADA2B (ENSECAG00000009381)	CCDC96 (ENSECAG00000009372)	KIAA0232 (ENSECAG00000024031)	BLOC1S4 (ENSECAG00000003954)	ENSECAG00000002649	S100P (ENSECAG00000023992)	ENSECAG00000058216	MAN2B2 (ENSECAG00000019297)	PPP2R2C (ENSECAG00000013951)	WFS1 (ENSECAG00000013126)	ENSECAG00000043260
Donkey	MODERN SPECIES	22	ENSEASG00005025149	ENSEASG00005004164	HGFAC (ENSEASG00005004371)	DOK7 (ENSEASG00005004429)	LRPAP1 (ENSEASG00005004447)	ENSEASG00005033997	ENSEASG00005004463	ENSEASG00005032469	ENSEASG00005031500	CPZ (ENSEASG00005004468)	TRMT44 (ENSEASG00005004478)	ACOX3 (ENSEASG00005004493)	HTRA3 (ENSEASG00005004509)	ENSEASG00005027671	ENSEASG00005028749	ABLIM2 (ENSEASG00005004676) ##22	AFAP1 (ENSEASG00005005136)	PSAPL1 (ENSEASG00005038318)	SORCS2 (ENSEASG00005005144)	GRPEL1 (ENSEASG00005036452)	TADA2B (ENSEASG00005034952)	ENSEASG00005005171	TBC1D14 (ENSEASG00005005175)	KIAA0232 (ENSEASG00005005182)	BLOC1S4 (ENSEASG00005005186)	ENSEASG00005031347	ENSEASG00005031306	ENSEASG00005034544	ENSEASG00005005194	ENSEASG00005032923	ENSEASG00005005202
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Primates	ANCESTRAL SPECIES	10	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000154531.y.b.b	ENSGT00390000009416	ENSGT00940000159192	ENSGT00940000157037.a.a	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000154531.y.b.b	ENSGT00390000009416	ENSGT00940000159192	ENSGT00940000157037.a.a	ENSGT00390000001538.a	ENSGT00940000160995.b.e.b	ENSGT00390000009472.b	ENSGT00940000163626.f.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00950000183337	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C
Pan	ANCESTRAL SPECIES	7	ENSGT00940000154531.y.b.b	ENSGT00390000009416	ENSGT00940000159192	ENSGT00940000157037.a.a	ENSGT00390000001538.a	ENSGT00940000160995.b.e.b	ENSGT00390000009472.b.a	ENSGT00940000163626.f.a.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00950000183337	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C
Chimpanzee	MODERN SPECIES	17	ENSPTRG00000050777	WDR1 (ENSPTRG00000015916)	SLC2A9 (ENSPTRG00000015915)	DRD5 (ENSPTRG00000031262)	DEFB131A (ENSPTRG00000015911)	DEFB130A (ENSPTRG00000034363)	ENSPTRG00000031265	ENSPTRG00000034308	HMX1 (ENSPTRG00000042875)	CPZ (ENSPTRG00000015909)	GPR78 (ENSPTRG00000015907)	TRMT44 (ENSPTRG00000034388)	ACOX3 (ENSPTRG00000015905)	HTRA3 (ENSPTRG00000015903)	SH3TC1 (ENSPTRG00000015901)	ABLIM2 (ENSPTRG00000015900) ##22	ENSPTRG00000038716	AFAP1 (ENSPTRG00000015897)	PSAPL1 (ENSPTRG00000031269)	SORCS2 (ENSPTRG00000015895)	GRPEL1 (ENSPTRG00000015894)	TADA2B (ENSPTRG00000015893)	CCDC96 (ENSPTRG00000020278)	TBC1D14 (ENSPTRG00000015892)	ENSPTRG00000052189	KIAA0232 (ENSPTRG00000015890)	BLOC1S4 (ENSPTRG00000051001)	MRFAP1L1 (ENSPTRG00000015888)	S100P (ENSPTRG00000015887)	ENSPTRG00000047908	ENSPTRG00000046653
Bonobo	MODERN SPECIES	17	ENSPPAG00000010911	HS3ST1 (ENSPPAG00000008014)	CLNK (ENSPPAG00000037951)	ENSPPAG00000043338	WDR1 (ENSPPAG00000030082)	SLC2A9 (ENSPPAG00000031738)	DRD5 (ENSPPAG00000023786)	ENSPPAG00000031253	ENSPPAG00000015865	CPZ (ENSPPAG00000036243)	GPR78 (ENSPPAG00000031581)	TRMT44 (ENSPPAG00000028201)	ACOX3 (ENSPPAG00000011697)	HTRA3 (ENSPPAG00000031446)	SH3TC1 (ENSPPAG00000028783)	ABLIM2 (ENSPPAG00000034667) ##22	AFAP1 (ENSPPAG00000002142)	ENSPPAG00000025997	SORCS2 (ENSPPAG00000036554)	GRPEL1 (ENSPPAG00000013236)	TADA2B (ENSPPAG00000034890)	TBC1D14 (ENSPPAG00000039444)	ENSPPAG00000034425	KIAA0232 (ENSPPAG00000037105)	BLOC1S4 (ENSPPAG00000012058)	MRFAP1L1 (ENSPPAG00000007021)	S100P (ENSPPAG00000017625)	ENSPPAG00000042290	ENSPPAG00000035212	MAN2B2 (ENSPPAG00000028247)	PPP2R2C (ENSPPAG00000039417)
Human	MODERN SPECIES	16	USP17L18 (ENSG00000250844)	USP17L17 (ENSG00000249104)	USP17L15 (ENSG00000223569)	USP17L13 (ENSG00000232399)	USP17L12 (ENSG00000227551)	USP17L11 (ENSG00000233136)	USP17L10 (ENSG00000231396)	FAM90A26 (ENSG00000229924)	HMX1 (ENSG00000215612)	CPZ (ENSG00000109625)	GPR78 (ENSG00000155269)	TRMT44 (ENSG00000155275)	ACOX3 (ENSG00000087008)	HTRA3 (ENSG00000170801)	SH3TC1 (ENSG00000125089)	ABLIM2 (ENSG00000163995) ##22	AFAP1 (ENSG00000196526)	PSAPL1 (ENSG00000178597)	SORCS2 (ENSG00000184985)	GRPEL1 (ENSG00000109519)	TADA2B (ENSG00000173011)	CCDC96 (ENSG00000173013)	TBC1D14 (ENSG00000132405)	KIAA0232 (ENSG00000170871)	BLOC1S4 (ENSG00000186222)	MRFAP1L1 (ENSG00000178988)	S100P (ENSG00000163993)	ENSG00000170846	MRFAP1 (ENSG00000179010)	MAN2B2 (ENSG00000013288)	PPP2R2C (ENSG00000074211)
Gorilla	MODERN SPECIES	17	ZNF518B (ENSGGOG00000040283)	ENSGGOG00000039866	WDR1 (ENSGGOG00000015364)	SLC2A9 (ENSGGOG00000015358)	DRD5 (ENSGGOG00000007931)	ENSGGOG00000039268	ENSGGOG00000022821	ENSGGOG00000036477	CPZ (ENSGGOG00000008061)	GPR78 (ENSGGOG00000008058)	TRMT44 (ENSGGOG00000008016)	ACOX3 (ENSGGOG00000008003)	HTRA3 (ENSGGOG00000005347)	SH3TC1 (ENSGGOG00000005337)	ENSGGOG00000042878	ABLIM2 (ENSGGOG00000009142) ##22	AFAP1 (ENSGGOG00000015836)	PSAPL1 (ENSGGOG00000002811)	SORCS2 (ENSGGOG00000015807)	GRPEL1 (ENSGGOG00000016390)	TADA2B (ENSGGOG00000016386)	ENSGGOG00000016381	TBC1D14 (ENSGGOG00000016363)	KIAA0232 (ENSGGOG00000015102)	BLOC1S4 (ENSGGOG00000007549)	MRFAP1L1 (ENSGGOG00000038267)	S100P (ENSGGOG00000027028)	ENSGGOG00000023517	ENSGGOG00000036653	ENSGGOG00000040669	MAN2B2 (ENSGGOG00000008067)
Orangutan	MODERN SPECIES	17	GRK4 (ENSPPYG00000014550)	HTT (ENSPPYG00000014551)	MSANTD1 (ENSPPYG00000014552)	RGS12 (ENSPPYG00000014553)	HGFAC (ENSPPYG00000029408)	DOK7 (ENSPPYG00000014554)	LRPAP1 (ENSPPYG00000014556)	ADRA2C (ENSPPYG00000036306)	HMX1 (ENSPPYG00000015293)	CPZ (ENSPPYG00000014560)	GPR78 (ENSPPYG00000014561)	TRMT44 (ENSPPYG00000038960)	ACOX3 (ENSPPYG00000014563)	HTRA3 (ENSPPYG00000014564)	SH3TC1 (ENSPPYG00000014566)	ABLIM2 (ENSPPYG00000014567) ##22	AFAP1 (ENSPPYG00000014569)	SORCS2 (ENSPPYG00000014571)	PSAPL1 (ENSPPYG00000014572)	GRPEL1 (ENSPPYG00000035781)	TADA2B (ENSPPYG00000041568)	CCDC96 (ENSPPYG00000014575)	TBC1D14 (ENSPPYG00000014578)	KIAA0232 (ENSPPYG00000014579)	BLOC1S4 (ENSPPYG00000014580)	MRFAP1L1 (ENSPPYG00000014581)	S100P (ENSPPYG00000014582)	ENSPPYG00000014584	MRFAP1 (ENSPPYG00000025866)	MAN2B2 (ENSPPYG00000014586)	PPP2R2C (ENSPPYG00000014588)
Gibbon	MODERN SPECIES	12	HTT (ENSNLEG00000000273)	ENSNLEG00000000286	ENSNLEG00000000287	HGFAC (ENSNLEG00000000301)	DOK7 (ENSNLEG00000000308)	LRPAP1 (ENSNLEG00000000309)	ENSNLEG00000018645	ENSNLEG00000031510	ENSNLEG00000011937	GPR78 (ENSNLEG00000011932)	TRMT44 (ENSNLEG00000011922)	ACOX3 (ENSNLEG00000011919)	HTRA3 (ENSNLEG00000011913)	SH3TC1 (ENSNLEG00000011887)	ENSNLEG00000028406	ABLIM2 (ENSNLEG00000011868) ##22	AFAP1 (ENSNLEG00000011850)	PSAPL1 (ENSNLEG00000019118)	ENSNLEG00000011834	GRPEL1 (ENSNLEG00000011822)	TADA2B (ENSNLEG00000011820)	ENSNLEG00000011821	TBC1D14 (ENSNLEG00000011813)	KIAA0232 (ENSNLEG00000011801)	MRFAP1L1 (ENSNLEG00000011799)	S100P (ENSNLEG00000011798)	ENSNLEG00000019117	ENSNLEG00000011791	MAN2B2 (ENSNLEG00000011788)	PPP2R2C (ENSNLEG00000011766)	WFS1 (ENSNLEG00000011751)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Rhinopithecus	ANCESTRAL SPECIES	143																ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b.c	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c
Black snub-nosed monkey	MODERN SPECIES	2170																ABLIM2 (ENSRBIG00000041531) ##22
Golden snub-nosed monkey	MODERN SPECIES	1478																ABLIM2 (ENSRROG00000038815) ##22	AFAP1 (ENSRROG00000038243)	SORCS2 (ENSRROG00000038217)	GRPEL1 (ENSRROG00000011503)	TADA2B (ENSRROG00000028976)	TBC1D14 (ENSRROG00000043690)	ENSRROG00000044087	KIAA0232 (ENSRROG00000028934)	ENSRROG00000028251	MRFAP1L1 (ENSRROG00000013722)	S100P (ENSRROG00000044147)	ENSRROG00000020151	MAN2B2 (ENSRROG00000041962)	PPP2R2C (ENSRROG00000045326)	WFS1 (ENSRROG00000029987)	JAKMIP1 (ENSRROG00000038557)
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Vervet Monkey	MODERN SPECIES	19	HTT (ENSCSAG00000015865)	MSANTD1 (ENSCSAG00000015872)	RGS12 (ENSCSAG00000015902)	HGFAC (ENSCSAG00000015923)	DOK7 (ENSCSAG00000015932)	ENSCSAG00000019706	LRPAP1 (ENSCSAG00000015939)	ENSCSAG00000015942	ADRA2C (ENSCSAG00000019705)	HMX1 (ENSCSAG00000015947)	CPZ (ENSCSAG00000015954)	GPR78 (ENSCSAG00000015965)	TRMT44 (ENSCSAG00000015971)	HTRA3 (ENSCSAG00000015988)	SH3TC1 (ENSCSAG00000015999)	ABLIM2 (ENSCSAG00000016010) ##22	AFAP1 (ENSCSAG00000016020)	PSAPL1 (ENSCSAG00000019704)	GRPEL1 (ENSCSAG00000016043)	TADA2B (ENSCSAG00000016045)	ENSCSAG00000019703	TBC1D14 (ENSCSAG00000016054)	KIAA0232 (ENSCSAG00000016061)	BLOC1S4 (ENSCSAG00000019702)	MRFAP1L1 (ENSCSAG00000016085)	S100P (ENSCSAG00000016092)	MRFAP1 (ENSCSAG00000016101)	MAN2B2 (ENSCSAG00000016111)	PPP2R2C (ENSCSAG00000016118)	WFS1 (ENSCSAG00000016125)	JAKMIP1 (ENSCSAG00000016146)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b
Olive baboon	MODERN SPECIES	61														ENSPANG00000048228	ENSPANG00000039052	ABLIM2 (ENSPANG00000019760) ##22
Cercopithecinae_d	ANCESTRAL SPECIES	85	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928
Sooty mangabey	MODERN SPECIES	649	GRK4 (ENSCATG00000035371)	HTT (ENSCATG00000040455)	MSANTD1 (ENSCATG00000035501)	RGS12 (ENSCATG00000034123)	HGFAC (ENSCATG00000040884)	DOK7 (ENSCATG00000036059)	LRPAP1 (ENSCATG00000035154)	ADRA2C (ENSCATG00000042063)	HMX1 (ENSCATG00000032412)	CPZ (ENSCATG00000013066)	GPR78 (ENSCATG00000043357)	TRMT44 (ENSCATG00000035762)	ACOX3 (ENSCATG00000031306)	HTRA3 (ENSCATG00000037928)	SH3TC1 (ENSCATG00000035668)	ABLIM2 (ENSCATG00000030535) ##22	AFAP1 (ENSCATG00000038081)	SORCS2 (ENSCATG00000033134)	GRPEL1 (ENSCATG00000041445)	TADA2B (ENSCATG00000042413)	TBC1D14 (ENSCATG00000040958)	ENSCATG00000017471	KIAA0232 (ENSCATG00000036186)	BLOC1S4 (ENSCATG00000021995)	MRFAP1L1 (ENSCATG00000019249)	S100P (ENSCATG00000041338)	ENSCATG00000017778	MAN2B2 (ENSCATG00000030238)	PPP2R2C (ENSCATG00000029704)	WFS1 (ENSCATG00000003876)	JAKMIP1 (ENSCATG00000025554)
Drill	MODERN SPECIES	1409			HTT (ENSMLEG00000043358)	MSANTD1 (ENSMLEG00000041591)	RGS12 (ENSMLEG00000035980)	HGFAC (ENSMLEG00000020815)	ENSMLEG00000028892	LRPAP1 (ENSMLEG00000032110)	ADRA2C (ENSMLEG00000041604)	CPZ (ENSMLEG00000036244)	GPR78 (ENSMLEG00000031143)	TRMT44 (ENSMLEG00000038987)	ACOX3 (ENSMLEG00000038218)	HTRA3 (ENSMLEG00000042540)	SH3TC1 (ENSMLEG00000012281)	ABLIM2 (ENSMLEG00000044169) ##22	AFAP1 (ENSMLEG00000033195)	SORCS2 (ENSMLEG00000043723)	GRPEL1 (ENSMLEG00000009386)	TADA2B (ENSMLEG00000039869)	TBC1D14 (ENSMLEG00000029496)	ENSMLEG00000031353	KIAA0232 (ENSMLEG00000043346)	BLOC1S4 (ENSMLEG00000018555)	MRFAP1L1 (ENSMLEG00000026396)	S100P (ENSMLEG00000010727)	ENSMLEG00000017347	MRFAP1 (ENSMLEG00000042203)	MAN2B2 (ENSMLEG00000038325)	PPP2R2C (ENSMLEG00000026416)	WFS1 (ENSMLEG00000043917)
Macaca	ANCESTRAL SPECIES	25	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00910000147514	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C.i	ENSGT01030000234638.b.a.b
Pig-tailed macaque	MODERN SPECIES	590	HTT (ENSMNEG00000037615)	MSANTD1 (ENSMNEG00000043740)	RGS12 (ENSMNEG00000037042)	HGFAC (ENSMNEG00000022644)	DOK7 (ENSMNEG00000029872)	LRPAP1 (ENSMNEG00000030259)	ENSMNEG00000041149	ADRA2C (ENSMNEG00000040943)	HMX1 (ENSMNEG00000039219)	CPZ (ENSMNEG00000031483)	GPR78 (ENSMNEG00000045501)	TRMT44 (ENSMNEG00000030113)	ACOX3 (ENSMNEG00000029626)	HTRA3 (ENSMNEG00000037839)	ENSMNEG00000042252	ABLIM2 (ENSMNEG00000027537) ##22	AFAP1 (ENSMNEG00000004303)	SORCS2 (ENSMNEG00000042007)	GRPEL1 (ENSMNEG00000038054)	TADA2B (ENSMNEG00000044586)	TBC1D14 (ENSMNEG00000040107)	ENSMNEG00000028403	KIAA0232 (ENSMNEG00000044759)	BLOC1S4 (ENSMNEG00000022723)	MRFAP1L1 (ENSMNEG00000017988)	S100P (ENSMNEG00000041835)	ENSMNEG00000021899	MAN2B2 (ENSMNEG00000042273)	PPP2R2C (ENSMNEG00000031702)	WFS1 (ENSMNEG00000030212)	JAKMIP1 (ENSMNEG00000003143)
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.a.b.b.b.a.b.a.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A.c	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C.i	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Rhesus	MODERN SPECIES	15	RGS12 (ENSMMUG00000007154)	HGFAC (ENSMMUG00000007162)	DOK7 (ENSMMUG00000046062)	ENSMMUG00000050948	ENSMMUG00000059133	LRPAP1 (ENSMMUG00000023099)	ADRA2C (ENSMMUG00000014781)	HMX1 (ENSMMUG00000063426)	CPZ (ENSMMUG00000006237)	GPR78 (ENSMMUG00000006236)	ENSMMUG00000058760	TRMT44 (ENSMMUG00000062398)	ACOX3 (ENSMMUG00000006234)	HTRA3 (ENSMMUG00000022672)	SH3TC1 (ENSMMUG00000030400)	ABLIM2 (ENSMMUG00000013984) ##22	AFAP1 (ENSMMUG00000043581)	SORCS2 (ENSMMUG00000022416)	PSAPL1 (ENSMMUG00000051974)	GRPEL1 (ENSMMUG00000064900)	TADA2B (ENSMMUG00000049270)	CCDC96 (ENSMMUG00000017001)	TBC1D14 (ENSMMUG00000017000)	KIAA0232 (ENSMMUG00000016999)	BLOC1S4 (ENSMMUG00000049992)	MRFAP1L1 (ENSMMUG00000021886)	S100P (ENSMMUG00000021887)	ENSMMUG00000064424	ENSMMUG00000060097	MRFAP1 (ENSMMUG00000021695)	MAN2B2 (ENSMMUG00000005298)
Crab-eating macaque	MODERN SPECIES	15	HTT (ENSMFAG00000036776)	MSANTD1 (ENSMFAG00000030979)	RGS12 (ENSMFAG00000039419)	HGFAC (ENSMFAG00000002414)	DOK7 (ENSMFAG00000045592)	LRPAP1 (ENSMFAG00000045907)	HMX1 (ENSMFAG00000034271)	CPZ (ENSMFAG00000045903)	GPR78 (ENSMFAG00000010719)	ENSMFAG00000052335	TRMT44 (ENSMFAG00000025459)	ACOX3 (ENSMFAG00000037622)	HTRA3 (ENSMFAG00000033668)	ENSMFAG00000036846	ENSMFAG00000064819	ABLIM2 (ENSMFAG00000033256) ##22	AFAP1 (ENSMFAG00000039822)	ENSMFAG00000058444	GRPEL1 (ENSMFAG00000059933)	TADA2B (ENSMFAG00000002501)	TBC1D14 (ENSMFAG00000034270)	KIAA0232 (ENSMFAG00000034581)	MRFAP1L1 (ENSMFAG00000056896)	S100P (ENSMFAG00000042181)	ENSMFAG00000064380	ENSMFAG00000011252	MAN2B2 (ENSMFAG00000034516)	PPP2R2C (ENSMFAG00000000990)	WFS1 (ENSMFAG00000040639)	JAKMIP1 (ENSMFAG00000036205)	ENSMFAG00000038554
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00950000182895.a.a.a.a.b.k.v.a	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Cebidae	ANCESTRAL SPECIES	4	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00950000182895.a.a.a.a.b.k.v.a	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT00830000128422.a	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000155541.A	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b
Capuchin	MODERN SPECIES	117	NAT8L (ENSCCAG00000033445)	POLN (ENSCCAG00000026095)	HAUS3 (ENSCCAG00000037575)	MXD4 (ENSCCAG00000026915)	ZFYVE28 (ENSCCAG00000019800)	ADRA2C (ENSCCAG00000033349)	ENSCCAG00000035547	HMX1 (ENSCCAG00000029215)	ENSCCAG00000031132	CPZ (ENSCCAG00000037917)	GPR78 (ENSCCAG00000023119)	TRMT44 (ENSCCAG00000018176)	ACOX3 (ENSCCAG00000026216)	HTRA3 (ENSCCAG00000036961)	SH3TC1 (ENSCCAG00000027117)	ABLIM2 (ENSCCAG00000025531) ##22	AFAP1 (ENSCCAG00000028544)	SORCS2 (ENSCCAG00000021696)	GRPEL1 (ENSCCAG00000036101)	TADA2B (ENSCCAG00000027900)	TBC1D14 (ENSCCAG00000019475)	KIAA0232 (ENSCCAG00000023673)	ENSCCAG00000033200	ENSCCAG00000019962	ENSCCAG00000030741	S100P (ENSCCAG00000029281)	ENSCCAG00000018562	MAN2B2 (ENSCCAG00000022428)	PPP2R2C (ENSCCAG00000032397)	WFS1 (ENSCCAG00000023081)	JAKMIP1 (ENSCCAG00000026955)
Bolivian squirrel monkey	MODERN SPECIES	108	GRK4 (ENSSBOG00000034886)	HTT (ENSSBOG00000001468)	MSANTD1 (ENSSBOG00000032002)	RGS12 (ENSSBOG00000001879)	ENSSBOG00000029708	HGFAC (ENSSBOG00000025765)	DOK7 (ENSSBOG00000034734)	LRPAP1 (ENSSBOG00000025745)	ENSSBOG00000026148	CPZ (ENSSBOG00000023106)	GPR78 (ENSSBOG00000036138)	TRMT44 (ENSSBOG00000025156)	ACOX3 (ENSSBOG00000022268)	HTRA3 (ENSSBOG00000019152)	SH3TC1 (ENSSBOG00000025058)	ABLIM2 (ENSSBOG00000018472) ##22	AFAP1 (ENSSBOG00000027624)	SORCS2 (ENSSBOG00000027153)	ENSSBOG00000029303	GRPEL1 (ENSSBOG00000023402)	TADA2B (ENSSBOG00000033366)	TBC1D14 (ENSSBOG00000029945)	KIAA0232 (ENSSBOG00000026766)	MRFAP1L1 (ENSSBOG00000033309)	S100P (ENSSBOG00000027690)	ENSSBOG00000008810	MAN2B2 (ENSSBOG00000029632)	PPP2R2C (ENSSBOG00000033832)	WFS1 (ENSSBOG00000034393)	JAKMIP1 (ENSSBOG00000021767)	ENSSBOG00000025885
Marmoset	MODERN SPECIES	15	MSANTD1 (ENSCJAG00000014062)	RGS12 (ENSCJAG00000014023)	HGFAC (ENSCJAG00000014013)	DOK7 (ENSCJAG00000014004)	LRPAP1 (ENSCJAG00000013237)	ADRA2C (ENSCJAG00000040081)	ENSCJAG00000055923	HMX1 (ENSCJAG00000044848)	CPZ (ENSCJAG00000021495)	GPR78 (ENSCJAG00000021496)	TRMT44 (ENSCJAG00000021498)	ACOX3 (ENSCJAG00000007110)	HTRA3 (ENSCJAG00000072254)	SH3TC1 (ENSCJAG00000013904)	ENSCJAG00000072520	ABLIM2 (ENSCJAG00000001053) ##22	ENSCJAG00000055912	ENSCJAG00000085371	AFAP1 (ENSCJAG00000001034)	PSAPL1 (ENSCJAG00000063407)	SORCS2 (ENSCJAG00000001022)	GRPEL1 (ENSCJAG00000040936)	TADA2B (ENSCJAG00000004932)	ENSCJAG00000004152	TBC1D14 (ENSCJAG00000004156)	KIAA0232 (ENSCJAG00000004174)	BLOC1S4 (ENSCJAG00000033540)	MRFAP1L1 (ENSCJAG00000082845)	S100P (ENSCJAG00000055083)	ENSCJAG00000022014	MRFAP1 (ENSCJAG00000076429)
Mas night monkey	MODERN SPECIES	395												TRMT44 (ENSANAG00000026046)	ACOX3 (ENSANAG00000022010)	HTRA3 (ENSANAG00000029170)	SH3TC1 (ENSANAG00000030761)	ABLIM2 (ENSANAG00000021439) ##22	AFAP1 (ENSANAG00000029447)	SORCS2 (ENSANAG00000032649)
Tarsier	MODERN SPECIES	7019																ABLIM2 (ENSTSYG00000037157) ##22	ENSTSYG00000033290
Strepsirrhini	ANCESTRAL SPECIES	40	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.q.b	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00740000115581.f	ENSGT00940000156736	ENSGT00390000015494	ENSGT01100000263544.c.a.a.b	ENSGT00940000159492	ENSGT00390000015667	ENSGT00940000159527	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00940000163023	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00910000144269	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.q.b	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Lemuriformes_a	ANCESTRAL SPECIES	93	ENSGT00740000115581.f	ENSGT00940000156736	ENSGT00390000015494	ENSGT01100000263544.c.a.a.b	ENSGT00940000159492	ENSGT00390000015667	ENSGT00940000159527	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00940000163023	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00910000144269	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250.q.b	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.B	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928
Coquerels sifaka	MODERN SPECIES	675												PCDH7 (ENSPCOG00000016022)	ENSPCOG00000021509	PIGG (ENSPCOG00000013385)	SH3TC1 (ENSPCOG00000018269)	ABLIM2 (ENSPCOG00000027716) ##22	AFAP1 (ENSPCOG00000014313)	SORCS2 (ENSPCOG00000023609)	GRPEL1 (ENSPCOG00000005210)	TADA2B (ENSPCOG00000002766)	ENSPCOG00000022637
Greater bamboo lemur	MODERN SPECIES	172	SPON2 (ENSPSMG00000002740)	ENSPSMG00000002744	ENSPSMG00000002762	FGFRL1 (ENSPSMG00000002798)	IDUA (ENSPSMG00000002839)	SLC26A1 (ENSPSMG00000002846)	TMEM175 (ENSPSMG00000002873)	GAK (ENSPSMG00000003100)	CPLX1 (ENSPSMG00000003571)	PCGF3 (ENSPSMG00000003577)	SLC49A3 (ENSPSMG00000003590)	PDE6B (ENSPSMG00000003606)	ENSPSMG00000003611	PIGG (ENSPSMG00000003730)	SH3TC1 (ENSPSMG00000003934)	ABLIM2 (ENSPSMG00000004485) ##22
Mouse lemur	MODERN SPECIES	9	FGFRL1 (ENSMICG00000030053)	IDUA (ENSMICG00000012938)	SLC26A1 (ENSMICG00000033003)	DGKQ (ENSMICG00000012917)	TMEM175 (ENSMICG00000029354)	GAK (ENSMICG00000012895)	CPLX1 (ENSMICG00000036308)	ENSMICG00000032656	PCGF3 (ENSMICG00000046135)	SLC49A3 (ENSMICG00000035034)	MYL5 (ENSMICG00000034354)	ATP5ME (ENSMICG00000046376)	PDE6B (ENSMICG00000010725)	PIGG (ENSMICG00000012340)	SH3TC1 (ENSMICG00000013247)	ABLIM2 (ENSMICG00000005733) ##22	ENSMICG00000033614	ENSMICG00000033823	AFAP1 (ENSMICG00000005712)	SORCS2 (ENSMICG00000011732)	ENSMICG00000043820	TADA2B (ENSMICG00000033119)	CCDC96 (ENSMICG00000007976)	ENSMICG00000007951	KIAA0232 (ENSMICG00000032016)	ENSMICG00000041611	S100P (ENSMICG00000034145)	MAN2B2 (ENSMICG00000007904)	PPP2R2C (ENSMICG00000007446)	WFS1 (ENSMICG00000028651)	ENSMICG00000045752
Bushbaby	MODERN SPECIES	261	LTC4S (ENSOGAG00000024180)	MAML1 (ENSOGAG00000024232)	CANX (ENSOGAG00000015727)	ENSOGAG00000029984	HNRNPH1 (ENSOGAG00000012631)	RUFY1 (ENSOGAG00000012620)	ADAMTS2 (ENSOGAG00000011081)	ZNF354C (ENSOGAG00000011077)	ADRA2C (ENSOGAG00000033833)	HMX1 (ENSOGAG00000032103)	CPZ (ENSOGAG00000002249)	TRMT44 (ENSOGAG00000002246)	ACOX3 (ENSOGAG00000002245)	HTRA3 (ENSOGAG00000025277)	SH3TC1 (ENSOGAG00000007883)	ABLIM2 (ENSOGAG00000007881) ##22	AFAP1 (ENSOGAG00000009378)	SORCS2 (ENSOGAG00000009359)	PSAPL1 (ENSOGAG00000033890)	GRPEL1 (ENSOGAG00000032291)	TADA2B (ENSOGAG00000006693)	TBC1D14 (ENSOGAG00000006685)	KIAA0232 (ENSOGAG00000007094)	BLOC1S4 (ENSOGAG00000011128)	ENSOGAG00000025197	S100P (ENSOGAG00000001789)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00530000066358	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928
Tree shrew	MODERN SPECIES	4541																ABLIM2 (ENSTBEG00000006854) ##22	ENSTBEG00000006454	AFAP1 (ENSTBEG00000004799)	SORCS2 (ENSTBEG00000002012)
Glires	ANCESTRAL SPECIES	8	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Rodentia	ANCESTRAL SPECIES	13	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Kangaroo rat	MODERN SPECIES	390	ENSDORG00000023495	ENSDORG00000001192	Nop14 (ENSDORG00000001193)	ENSDORG00000001194	Msantd1 (ENSDORG00000003277)	Rgs12 (ENSDORG00000014704)	Hgfac (ENSDORG00000014709)	Dok7 (ENSDORG00000014713)	Lrpap1 (ENSDORG00000014714)	Adra2c (ENSDORG00000029260)	Cpz (ENSDORG00000009339)	Trmt44 (ENSDORG00000006411)	Acox3 (ENSDORG00000015374)	Htra3 (ENSDORG00000002142)	Sh3tc1 (ENSDORG00000007236)	Ablim2 (ENSDORG00000012609) ##22	Afap1 (ENSDORG00000006803)	Sorcs2 (ENSDORG00000027668)	Grpel1 (ENSDORG00000016660)	Tada2b (ENSDORG00000029869)	ENSDORG00000026965	Tbc1d14 (ENSDORG00000000773)	D5Ertd579e (ENSDORG00000029162)	Man2b2 (ENSDORG00000016448)	Ppp2r2c (ENSDORG00000015756)	Wfs1 (ENSDORG00000012589)	ENSDORG00000024252	ENSDORG00000011737	ENSDORG00000024833	Crmp1 (ENSDORG00000005781)	Evc (ENSDORG00000008832)
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Muroidea	ANCESTRAL SPECIES	17	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Murinae	ANCESTRAL SPECIES	12	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Rat	MODERN SPECIES	5	Grk4 (ENSRNOG00000011847)	Htt (ENSRNOG00000011073)	Msantd1 (ENSRNOG00000064777)	LOC108352780 (ENSRNOG00000030162)	Rgs12 (ENSRNOG00000030568)	Hgfac (ENSRNOG00000009572)	Dok7 (ENSRNOG00000022419)	Lrpap1 (ENSRNOG00000009313)	Adra2c (ENSRNOG00000009299)	Hmx1 (ENSRNOG00000009154)	Cpz (ENSRNOG00000008947)	Trmt44 (ENSRNOG00000008898)	Acox3 (ENSRNOG00000008474)	Htra3 (ENSRNOG00000008182)	Sh3tc1 (ENSRNOG00000007993)	Ablim2 (ENSRNOG00000007882) ##22	Afap1 (ENSRNOG00000060665)	Psapl1 (ENSRNOG00000006845)	Sorcs2 (ENSRNOG00000007033)	ENSRNOG00000070648	Grpel1 (ENSRNOG00000006593)	Tada2b (ENSRNOG00000027326)	Ccdc96 (ENSRNOG00000006575)	ENSRNOG00000062938	Tbc1d14 (ENSRNOG00000006400)	LOC680039 (ENSRNOG00000027623)	Bloc1s4 (ENSRNOG00000054224)	ENSRNOG00000068182	Man2b2 (ENSRNOG00000056162)	Ppp2r2c (ENSRNOG00000058202)	Wfs1 (ENSRNOG00000005108)
Mus	ANCESTRAL SPECIES	14	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Shrew mouse	MODERN SPECIES	4	Nop14 (MGP_PahariEiJ_G0016921)	Grk4 (MGP_PahariEiJ_G0016922)	Htt (MGP_PahariEiJ_G0016923)	Msantd1 (MGP_PahariEiJ_G0016924)	Rgs12 (MGP_PahariEiJ_G0016925)	Hgfac (MGP_PahariEiJ_G0016926)	Dok7 (MGP_PahariEiJ_G0016927)	Lrpap1 (MGP_PahariEiJ_G0016928)	Adra2c (MGP_PahariEiJ_G0016929)	Hmx1 (MGP_PahariEiJ_G0016930)	Cpz (MGP_PahariEiJ_G0016931)	Trmt44 (MGP_PahariEiJ_G0016932)	Acox3 (MGP_PahariEiJ_G0016933)	Htra3 (MGP_PahariEiJ_G0016934)	Sh3tc1 (MGP_PahariEiJ_G0016935)	Ablim2 (MGP_PahariEiJ_G0016936) ##22	Afap1 (MGP_PahariEiJ_G0016937)	Sorcs2 (MGP_PahariEiJ_G0016938)	Psapl1 (MGP_PahariEiJ_G0016939)	Grpel1 (MGP_PahariEiJ_G0016940)	Tada2b (MGP_PahariEiJ_G0016941)	Ccdc96 (MGP_PahariEiJ_G0016942)	Tbc1d14 (MGP_PahariEiJ_G0016943)	D5Ertd579e (MGP_PahariEiJ_G0016944)	Bloc1s4 (MGP_PahariEiJ_G0016945)	MGP_PahariEiJ_G0016946	MGP_PahariEiJ_G0016947	Man2b2 (MGP_PahariEiJ_G0016948)	Ppp2r2c (MGP_PahariEiJ_G0016949)	Wfs1 (MGP_PahariEiJ_G0016950)	Jakmip1 (MGP_PahariEiJ_G0016951)
Mus_A	ANCESTRAL SPECIES	6	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Ryukyu mouse	MODERN SPECIES	14	Nop14 (MGP_CAROLIEiJ_G0027137)	Grk4 (MGP_CAROLIEiJ_G0027138)	Htt (MGP_CAROLIEiJ_G0027139)	Msantd1 (MGP_CAROLIEiJ_G0027140)	Rgs12 (MGP_CAROLIEiJ_G0027141)	Hgfac (MGP_CAROLIEiJ_G0027142)	Dok7 (MGP_CAROLIEiJ_G0027143)	Lrpap1 (MGP_CAROLIEiJ_G0027144)	Adra2c (MGP_CAROLIEiJ_G0027145)	Hmx1 (MGP_CAROLIEiJ_G0027146)	Cpz (MGP_CAROLIEiJ_G0027147)	Trmt44 (MGP_CAROLIEiJ_G0027148)	Acox3 (MGP_CAROLIEiJ_G0027149)	Htra3 (MGP_CAROLIEiJ_G0027150)	Sh3tc1 (MGP_CAROLIEiJ_G0027151)	Ablim2 (MGP_CAROLIEiJ_G0027152) ##22	Afap1 (MGP_CAROLIEiJ_G0027153)	Sorcs2 (MGP_CAROLIEiJ_G0027154)	Psapl1 (MGP_CAROLIEiJ_G0027155)	Grpel1 (MGP_CAROLIEiJ_G0027156)	Tada2b (MGP_CAROLIEiJ_G0027157)	Ccdc96 (MGP_CAROLIEiJ_G0027158)	Tbc1d14 (MGP_CAROLIEiJ_G0027159)	D5Ertd579e (MGP_CAROLIEiJ_G0027160)	Bloc1s4 (MGP_CAROLIEiJ_G0027161)	MGP_CAROLIEiJ_G0027162	MGP_CAROLIEiJ_G0027163	Man2b2 (MGP_CAROLIEiJ_G0027164)	Ppp2r2c (MGP_CAROLIEiJ_G0027165)	Wfs1 (MGP_CAROLIEiJ_G0027166)	Jakmip1 (MGP_CAROLIEiJ_G0027167)
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Mouse	MODERN SPECIES	14	Nop14 (ENSMUSG00000036693)	Grk4 (ENSMUSG00000052783)	Htt (ENSMUSG00000029104)	Msantd1 (ENSMUSG00000051246)	Rgs12 (ENSMUSG00000029101)	Hgfac (ENSMUSG00000029102)	Dok7 (ENSMUSG00000044716)	Lrpap1 (ENSMUSG00000029103)	Adra2c (ENSMUSG00000045318)	Hmx1 (ENSMUSG00000067438)	Cpz (ENSMUSG00000036596)	Trmt44 (ENSMUSG00000029097)	Acox3 (ENSMUSG00000029098)	Htra3 (ENSMUSG00000029096)	Sh3tc1 (ENSMUSG00000036553)	Ablim2 (ENSMUSG00000029095) ##22	Afap1 (ENSMUSG00000029094)	Sorcs2 (ENSMUSG00000029093)	Psapl1 (ENSMUSG00000043430)	Grpel1 (ENSMUSG00000029198)	Tada2b (ENSMUSG00000029196)	Ccdc96 (ENSMUSG00000050677)	Tbc1d14 (ENSMUSG00000029192)	D5Ertd579e (ENSMUSG00000029190)	Bloc1s4 (ENSMUSG00000060708)	Mrfap1 (ENSMUSG00000055302)	Man2b2 (ENSMUSG00000029119)	Ppp2r2c (ENSMUSG00000029120)	Wfs1 (ENSMUSG00000039474)	Jakmip1 (ENSMUSG00000063646)	Gm1043 (ENSMUSG00000117286)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
spretus	MODERN SPECIES	14	Nop14 (MGP_SPRETEiJ_G0028133)	MGP_SPRETEiJ_G0028134	Htt (MGP_SPRETEiJ_G0028135)	Msantd1 (MGP_SPRETEiJ_G0028136)	Rgs12 (MGP_SPRETEiJ_G0028137)	Hgfac (MGP_SPRETEiJ_G0028138)	Dok7 (MGP_SPRETEiJ_G0028139)	Lrpap1 (MGP_SPRETEiJ_G0028140)	Adra2c (MGP_SPRETEiJ_G0028141)	Hmx1 (MGP_SPRETEiJ_G0028142)	Cpz (MGP_SPRETEiJ_G0028143)	Trmt44 (MGP_SPRETEiJ_G0028144)	Acox3 (MGP_SPRETEiJ_G0028145)	Htra3 (MGP_SPRETEiJ_G0028146)	Sh3tc1 (MGP_SPRETEiJ_G0028147)	Ablim2 (MGP_SPRETEiJ_G0028148) ##22	Afap1 (MGP_SPRETEiJ_G0028149)	Sorcs2 (MGP_SPRETEiJ_G0028150)	Psapl1 (MGP_SPRETEiJ_G0028151)	Grpel1 (MGP_SPRETEiJ_G0028152)	Tada2b (MGP_SPRETEiJ_G0028153)	Ccdc96 (MGP_SPRETEiJ_G0028154)	Tbc1d14 (MGP_SPRETEiJ_G0028155)	D5Ertd579e (MGP_SPRETEiJ_G0028156)	Bloc1s4 (MGP_SPRETEiJ_G0028157)	MGP_SPRETEiJ_G0028158	MGP_SPRETEiJ_G0028159	Man2b2 (MGP_SPRETEiJ_G0028160)	Ppp2r2c (MGP_SPRETEiJ_G0028161)	Wfs1 (MGP_SPRETEiJ_G0028162)	Jakmip1 (MGP_SPRETEiJ_G0028163)
Steppe mouse	MODERN SPECIES	3132	Nop14 (ENSMSIG00000022337)	Grk4 (ENSMSIG00000022371)	Htt (ENSMSIG00000022431)	Msantd1 (ENSMSIG00000022619)	Rgs12 (ENSMSIG00000022662)	Hgfac (ENSMSIG00000022868)	Dok7 (ENSMSIG00000022905)	Lrpap1 (ENSMSIG00000022985)	Adra2c (ENSMSIG00000023019)	ENSMSIG00000023027	Cpz (ENSMSIG00000023039)	Trmt44 (ENSMSIG00000023059)	Acox3 (ENSMSIG00000023076)	Htra3 (ENSMSIG00000023159)	Sh3tc1 (ENSMSIG00000023220)	Ablim2 (ENSMSIG00000023274) ##22
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220	ENSGT01030000234527.A.a.b.b.b
Chinese hamster chok1gshd	MODERN SPECIES	44	Grk4 (ENSCGRG00001011864)	Htt (ENSCGRG00001024008)	ENSCGRG00001017546	Msantd1 (ENSCGRG00001020279)	Rgs12 (ENSCGRG00001009377)	Hgfac (ENSCGRG00001011915)	Dok7 (ENSCGRG00001018277)	Lrpap1 (ENSCGRG00001019166)	Adra2c (ENSCGRG00001008328)	Hmx1 (ENSCGRG00001020782)	Cpz (ENSCGRG00001012760)	Trmt44 (ENSCGRG00001016915)	Acox3 (ENSCGRG00001018521)	Htra3 (ENSCGRG00001010385)	Sh3tc1 (ENSCGRG00001019370)	Ablim2 (ENSCGRG00001019600) ##22	Afap1 (ENSCGRG00001022799)	Sorcs2 (ENSCGRG00001014802)	Psapl1 (ENSCGRG00001012581)	ENSCGRG00001001259	Grpel1 (ENSCGRG00001009780)	Tada2b (ENSCGRG00001010287)	Ccdc96 (ENSCGRG00001013284)	Tbc1d14 (ENSCGRG00001017768)	D5Ertd579e (ENSCGRG00001005712)	Bloc1s4 (ENSCGRG00001011319)	Mrfap1 (ENSCGRG00001009764)	Man2b2 (ENSCGRG00001016058)	Ppp2r2c (ENSCGRG00001019071)	Wfs1 (ENSCGRG00001022731)	Jakmip1 (ENSCGRG00001024145)
Golden Hamster	MODERN SPECIES	632	Nop14 (ENSMAUG00000011891)	Grk4 (ENSMAUG00000019885)	Htt (ENSMAUG00000016135)	Msantd1 (ENSMAUG00000019122)	Rgs12 (ENSMAUG00000020471)	Hgfac (ENSMAUG00000014240)	Dok7 (ENSMAUG00000013714)	Lrpap1 (ENSMAUG00000000794)	Adra2c (ENSMAUG00000010360)	Hmx1 (ENSMAUG00000014298)	Cpz (ENSMAUG00000021426)	Trmt44 (ENSMAUG00000021974)	Acox3 (ENSMAUG00000020686)	Htra3 (ENSMAUG00000005565)	Sh3tc1 (ENSMAUG00000021685)	Ablim2 (ENSMAUG00000015012) ##22	Afap1 (ENSMAUG00000011963)	Sorcs2 (ENSMAUG00000017879)	Grpel1 (ENSMAUG00000021692)	Tada2b (ENSMAUG00000011750)	Ccdc96 (ENSMAUG00000017336)	Tbc1d14 (ENSMAUG00000012045)	D5Ertd579e (ENSMAUG00000017750)	Bloc1s4 (ENSMAUG00000009210)	Mrfap1 (ENSMAUG00000019876)	Man2b2 (ENSMAUG00000010000)	Ppp2r2c (ENSMAUG00000013526)	Wfs1 (ENSMAUG00000021403)	ENSMAUG00000008007	ENSMAUG00000001336	Gm1043 (ENSMAUG00000006911)
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT00390000003220
Prairie vole	MODERN SPECIES	88	Nop14 (ENSMOCG00000021638)	Grk4 (ENSMOCG00000014083)	Htt (ENSMOCG00000019391)	Msantd1 (ENSMOCG00000016043)	Rgs12 (ENSMOCG00000022287)	Hgfac (ENSMOCG00000010840)	Dok7 (ENSMOCG00000015164)	Lrpap1 (ENSMOCG00000001033)	Adra2c (ENSMOCG00000006396)	Hmx1 (ENSMOCG00000013589)	Cpz (ENSMOCG00000021090)	Trmt44 (ENSMOCG00000017807)	Acox3 (ENSMOCG00000005263)	Htra3 (ENSMOCG00000014875)	Sh3tc1 (ENSMOCG00000019986)	Ablim2 (ENSMOCG00000002107) ##22	Afap1 (ENSMOCG00000015747)	Sorcs2 (ENSMOCG00000012048)	Grpel1 (ENSMOCG00000015614)	Tada2b (ENSMOCG00000000385)	Tbc1d14 (ENSMOCG00000017556)	D5Ertd579e (ENSMOCG00000020581)	Bloc1s4 (ENSMOCG00000004103)	Mrfap1 (ENSMOCG00000013388)	Man2b2 (ENSMOCG00000019526)	Ppp2r2c (ENSMOCG00000019489)	Wfs1 (ENSMOCG00000021244)	Jakmip1 (ENSMOCG00000000764)	Gm1043 (ENSMOCG00000022856)	Crmp1 (ENSMOCG00000001460)	Evc (ENSMOCG00000014503)
Northern American deer mouse	MODERN SPECIES	1	Grk4 (ENSPEMG00000003121)	Htt (ENSPEMG00000000805)	Msantd1 (ENSPEMG00000028370)	Rgs12 (ENSPEMG00000012259)	Hgfac (ENSPEMG00000008506)	Dok7 (ENSPEMG00000018287)	Lrpap1 (ENSPEMG00000019005)	ENSPEMG00000030404	Adra2c (ENSPEMG00000007034)	Hmx1 (ENSPEMG00000007689)	Cpz (ENSPEMG00000018359)	Trmt44 (ENSPEMG00000007598)	Acox3 (ENSPEMG00000008809)	Htra3 (ENSPEMG00000009866)	Sh3tc1 (ENSPEMG00000015098)	Ablim2 (ENSPEMG00000015528) ##22	Afap1 (ENSPEMG00000019260)	Sorcs2 (ENSPEMG00000016677)	Psapl1 (ENSPEMG00000030506)	Grpel1 (ENSPEMG00000029107)	Tada2b (ENSPEMG00000010787)	Ccdc96 (ENSPEMG00000011040)	Tbc1d14 (ENSPEMG00000001163)	D5Ertd579e (ENSPEMG00000009021)	Bloc1s4 (ENSPEMG00000006436)	Mrfap1 (ENSPEMG00000017209)	Man2b2 (ENSPEMG00000011183)	Ppp2r2c (ENSPEMG00000018216)	Wfs1 (ENSPEMG00000004831)	Jakmip1 (ENSPEMG00000016344)	Gm1043 (ENSPEMG00000016478)
Upper Galilee mountains blind mole rat	MODERN SPECIES	807									Hmx1 (ENSNGAG00000001883)	ENSNGAG00000007693	Cpz (ENSNGAG00000011621)	Trmt44 (ENSNGAG00000000623)	Acox3 (ENSNGAG00000022184)	Htra3 (ENSNGAG00000006315)	Sh3tc1 (ENSNGAG00000012387)	Ablim2 (ENSNGAG00000020346) ##22	Afap1 (ENSNGAG00000022001)	Sorcs2 (ENSNGAG00000020173)
Lesser Egyptian jerboa	MODERN SPECIES	58	Nop14 (ENSJJAG00000006861)	Grk4 (ENSJJAG00000012324)	Htt (ENSJJAG00000014310)	Msantd1 (ENSJJAG00000015075)	ENSJJAG00000022086	ENSJJAG00000022095	Hgfac (ENSJJAG00000017476)	Dok7 (ENSJJAG00000017296)	Lrpap1 (ENSJJAG00000024126)	Hmx1 (ENSJJAG00000022946)	Cpz (ENSJJAG00000023616)	Trmt44 (ENSJJAG00000018255)	Acox3 (ENSJJAG00000015539)	Htra3 (ENSJJAG00000021963)	Sh3tc1 (ENSJJAG00000023163)	Ablim2 (ENSJJAG00000019184) ##22	Afap1 (ENSJJAG00000000844)	Sorcs2 (ENSJJAG00000005535)	ENSJJAG00000022830	ENSJJAG00000014281	Grpel1 (ENSJJAG00000013642)	Tada2b (ENSJJAG00000017078)	Ccdc96 (ENSJJAG00000023826)	Tbc1d14 (ENSJJAG00000019700)	ENSJJAG00000004558	ENSJJAG00000004447	ENSJJAG00000003772	ENSJJAG00000019504	Mrfap1 (ENSJJAG00000004261)	ENSJJAG00000004013
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c
Marmotini	ANCESTRAL SPECIES	26	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c
Alpin marmot	MODERN SPECIES	9	ADD1 (ENSMMMG00000010678)	ENSMMMG00000012548	NOP14 (ENSMMMG00000012574)	GRK4 (ENSMMMG00000012594)	HTT (ENSMMMG00000012619)	MSANTD1 (ENSMMMG00000012701)	RGS12 (ENSMMMG00000012736)	HGFAC (ENSMMMG00000013025)	LRPAP1 (ENSMMMG00000013053)	ADRA2C (ENSMMMG00000014251)	CPZ (ENSMMMG00000014261)	TRMT44 (ENSMMMG00000014276)	ACOX3 (ENSMMMG00000014316)	HTRA3 (ENSMMMG00000014366)	SH3TC1 (ENSMMMG00000014397)	ABLIM2 (ENSMMMG00000014483) ##22	AFAP1 (ENSMMMG00000014805)	SORCS2 (ENSMMMG00000014836)	GRPEL1 (ENSMMMG00000014999)	TADA2B (ENSMMMG00000015003)	ENSMMMG00000015006	TBC1D14 (ENSMMMG00000015012)	KIAA0232 (ENSMMMG00000015088)	BLOC1S4 (ENSMMMG00000015101)	ENSMMMG00000015103	S100P (ENSMMMG00000015105)	MAN2B2 (ENSMMMG00000015106)	PPP2R2C (ENSMMMG00000015117)	WFS1 (ENSMMMG00000015123)	JAKMIP1 (ENSMMMG00000015150)	ENSMMMG00000015267
Marmotini_b	ANCESTRAL SPECIES	33	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c
Arctic ground squirrel	MODERN SPECIES	154	NOP14 (ENSUPAG00010005404)	GRK4 (ENSUPAG00010005384)	HTT (ENSUPAG00010005314)	MSANTD1 (ENSUPAG00010005291)	RGS12 (ENSUPAG00010005196)	HGFAC (ENSUPAG00010005168)	DOK7 (ENSUPAG00010005159)	LRPAP1 (ENSUPAG00010005144)	ADRA2C (ENSUPAG00010005139)	HMX1 (ENSUPAG00010005133)	CPZ (ENSUPAG00010005113)	TRMT44 (ENSUPAG00010005096)	ACOX3 (ENSUPAG00010005046)	HTRA3 (ENSUPAG00010005039)	SH3TC1 (ENSUPAG00010005003)	ABLIM2 (ENSUPAG00010004675) ##22	AFAP1 (ENSUPAG00010004645)	PSAPL1 (ENSUPAG00010004619)	SORCS2 (ENSUPAG00010004579)	GRPEL1 (ENSUPAG00010004575)	TADA2B (ENSUPAG00010004566)	ENSUPAG00010004564	ENSUPAG00010004558	TBC1D14 (ENSUPAG00010004452)	KIAA0232 (ENSUPAG00010004399)	BLOC1S4 (ENSUPAG00010004395)	S100P (ENSUPAG00010004392)	MAN2B2 (ENSUPAG00010004375)	PPP2R2C (ENSUPAG00010004357)	WFS1 (ENSUPAG00010004345)	ENSUPAG00010004337
Squirrel	MODERN SPECIES	77	ENSSTOG00000025349	NOP14 (ENSSTOG00000009739)	GRK4 (ENSSTOG00000009753)	HTT (ENSSTOG00000009766)	MSANTD1 (ENSSTOG00000001629)	RGS12 (ENSSTOG00000022380)	HGFAC (ENSSTOG00000025456)	DOK7 (ENSSTOG00000004961)	LRPAP1 (ENSSTOG00000002323)	HMX1 (ENSSTOG00000034792)	CPZ (ENSSTOG00000027638)	TRMT44 (ENSSTOG00000014057)	ACOX3 (ENSSTOG00000016342)	HTRA3 (ENSSTOG00000021150)	SH3TC1 (ENSSTOG00000020377)	ABLIM2 (ENSSTOG00000024265) ##22	AFAP1 (ENSSTOG00000023755)	SORCS2 (ENSSTOG00000021488)	GRPEL1 (ENSSTOG00000009782)	ENSSTOG00000027035	TBC1D14 (ENSSTOG00000028274)	KIAA0232 (ENSSTOG00000015114)	BLOC1S4 (ENSSTOG00000015106)	ENSSTOG00000024126	S100P (ENSSTOG00000003753)	MAN2B2 (ENSSTOG00000003905)	PPP2R2C (ENSSTOG00000011959)	WFS1 (ENSSTOG00000021858)	ENSSTOG00000029807	JAKMIP1 (ENSSTOG00000009209)	CRMP1 (ENSSTOG00000008899)
Eurasian red squirrel	MODERN SPECIES	18	NOP14 (ENSSVLG00005016178)	GRK4 (ENSSVLG00005015841)	HTT (ENSSVLG00005015171)	MSANTD1 (ENSSVLG00005015035)	RGS12 (ENSSVLG00005014175)	HGFAC (ENSSVLG00005013667)	DOK7 (ENSSVLG00005013571)	LRPAP1 (ENSSVLG00005013407)	ADRA2C (ENSSVLG00005013315)	HMX1 (ENSSVLG00005013295)	CPZ (ENSSVLG00005013141)	TRMT44 (ENSSVLG00005012786)	ACOX3 (ENSSVLG00005012401)	HTRA3 (ENSSVLG00005012341)	SH3TC1 (ENSSVLG00005012110)	ABLIM2 (ENSSVLG00005010614) ##22	AFAP1 (ENSSVLG00005010402)	PSAPL1 (ENSSVLG00005010373)	SORCS2 (ENSSVLG00005010100)	ENSSVLG00005010062	ENSSVLG00005010011	TADA2B (ENSSVLG00005009970)	ENSSVLG00005009953	TBC1D14 (ENSSVLG00005009746)	ENSSVLG00005009687	KIAA0232 (ENSSVLG00005009626)	BLOC1S4 (ENSSVLG00005009606)	ENSSVLG00005009589	S100P (ENSSVLG00005009565)	ENSSVLG00005009547	MAN2B2 (ENSSVLG00005009508)
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000162871	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000166785
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741.y	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741.y	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT00940000161707.b	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a ##22	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000016928	ENSGT00940000153713.B.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000154127.B
Long-tailed chinchilla	MODERN SPECIES	221	ADD1 (ENSCLAG00000011442)	ENSCLAG00000011338	NOP14 (ENSCLAG00000008622)	GRK4 (ENSCLAG00000007161)	HTT (ENSCLAG00000007604)	MSANTD1 (ENSCLAG00000008147)	ENSCLAG00000008016	HGFAC (ENSCLAG00000008342)	DOK7 (ENSCLAG00000010230)	LRPAP1 (ENSCLAG00000007328)	CPZ (ENSCLAG00000010243)	TRMT44 (ENSCLAG00000008063)	ACOX3 (ENSCLAG00000009133)	HTRA3 (ENSCLAG00000007335)	SH3TC1 (ENSCLAG00000007496)	ABLIM2 (ENSCLAG00000008762) ##22	AFAP1 (ENSCLAG00000011637)	SORCS2 (ENSCLAG00000008556)	PSAPL1 (ENSCLAG00000018086)	GRPEL1 (ENSCLAG00000014866)	TADA2B (ENSCLAG00000014444)	TBC1D14 (ENSCLAG00000009594)	KIAA0232 (ENSCLAG00000007238)	ENSCLAG00000008626	MAN2B2 (ENSCLAG00000012883)	PPP2R2C (ENSCLAG00000011596)	WFS1 (ENSCLAG00000011130)	JAKMIP1 (ENSCLAG00000010363)	CRMP1 (ENSCLAG00000007378)	EVC (ENSCLAG00000015926)	EVC2 (ENSCLAG00000010171)
Degu	MODERN SPECIES	47	NOP14 (ENSODEG00000011223)	GRK4 (ENSODEG00000012144)	HTT (ENSODEG00000010889)	MSANTD1 (ENSODEG00000009931)	ENSODEG00000019744	RGS12 (ENSODEG00000011606)	HGFAC (ENSODEG00000010427)	DOK7 (ENSODEG00000010960)	LRPAP1 (ENSODEG00000011862)	ADRA2C (ENSODEG00000009910)	CPZ (ENSODEG00000010389)	TRMT44 (ENSODEG00000009730)	ACOX3 (ENSODEG00000009811)	HTRA3 (ENSODEG00000010864)	SH3TC1 (ENSODEG00000010846)	ABLIM2 (ENSODEG00000009883) ##22	AFAP1 (ENSODEG00000009173)	SORCS2 (ENSODEG00000010208)	GRPEL1 (ENSODEG00000009579)	TADA2B (ENSODEG00000009529)	ENSODEG00000009069	ENSODEG00000010053	KIAA0232 (ENSODEG00000009378)	ENSODEG00000013573	MAN2B2 (ENSODEG00000010318)	PPP2R2C (ENSODEG00000011119)	WFS1 (ENSODEG00000012808)	JAKMIP1 (ENSODEG00000010138)	CRMP1 (ENSODEG00000009439)	EVC (ENSODEG00000008913)	EVC2 (ENSODEG00000010011)
Guinea pig	MODERN SPECIES	166	ENSCPOG00000032158	ENSCPOG00000012872	HTT (ENSCPOG00000007218)	MSANTD1 (ENSCPOG00000008697)	RGS12 (ENSCPOG00000005334)	HGFAC (ENSCPOG00000023599)	DOK7 (ENSCPOG00000020197)	LRPAP1 (ENSCPOG00000005331)	ENSCPOG00000023934	HMX1 (ENSCPOG00000022976)	CPZ (ENSCPOG00000025982)	TRMT44 (ENSCPOG00000032399)	ACOX3 (ENSCPOG00000024370)	HTRA3 (ENSCPOG00000019986)	SH3TC1 (ENSCPOG00000004747)	ABLIM2 (ENSCPOG00000009704) ##22	AFAP1 (ENSCPOG00000023490)	SORCS2 (ENSCPOG00000021058)	GRPEL1 (ENSCPOG00000031655)	TADA2B (ENSCPOG00000035453)	ENSCPOG00000039540	TBC1D14 (ENSCPOG00000009991)	KIAA0232 (ENSCPOG00000039758)	ENSCPOG00000022457	MAN2B2 (ENSCPOG00000007632)
Naked mole-rat female	MODERN SPECIES	1	ENSHGLG00000048089	HTT (ENSHGLG00000014813)	MSANTD1 (ENSHGLG00000015087)	ENSHGLG00000016876	ENSHGLG00000016854	DOK7 (ENSHGLG00000018845)	ENSHGLG00000019431	ENSHGLG00000041494	ENSHGLG00000021093	ENSHGLG00000038773	ENSHGLG00000013817	TRMT44 (ENSHGLG00000014808)	ACOX3 (ENSHGLG00000014645)	HTRA3 (ENSHGLG00000014617)	SH3TC1 (ENSHGLG00000014578)	ABLIM2 (ENSHGLG00000014370) ##22	AFAP1 (ENSHGLG00000014284)	PSAPL1 (ENSHGLG00000042113)	SORCS2 (ENSHGLG00000014243)	GRPEL1 (ENSHGLG00000044024)	TADA2B (ENSHGLG00000040286)	ENSHGLG00000035793	TBC1D14 (ENSHGLG00000008360)	KIAA0232 (ENSHGLG00000008045)	BLOC1S4 (ENSHGLG00000046522)	ENSHGLG00000007372	ENSHGLG00000007042	MAN2B2 (ENSHGLG00000006658)	PPP2R2C (ENSHGLG00000050574)	WFS1 (ENSHGLG00000005950)	ENSHGLG00000049306
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.a ##22
Rabbit	MODERN SPECIES	1093																ENSOCUG00000029987 ##22
Pika	MODERN SPECIES	2825																ENSOPRG00000013821 ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b ##22
Gnathostomata	DUPLICATION
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Elephant shark	MODERN SPECIES	930																ENSCMIG00000000334 ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES	10	ENSGT00390000009902	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a	ENSGT00940000158132.m.b
Euacanthomorphacea	ANCESTRAL SPECIES	20	ENSGT00390000009902	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00390000009902	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Pleuronectoidei	ANCESTRAL SPECIES	23										ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a	ENSGT00940000158132.m.b
Tongue sole	MODERN SPECIES	10	LTBP3 (ENSCSEG00000020073)	DSCAML1 (ENSCSEG00000020036)	ENSCSEG00000020025	myo1ca (ENSCSEG00000020002)	ENSCSEG00000019993	ENSCSEG00000019987	ENSCSEG00000019978	stag2a (ENSCSEG00000019962)	thoc2 (ENSCSEG00000019946)	EBF1 (ENSCSEG00000019931)	RNF145 (ENSCSEG00000019927)	ublcp1 (ENSCSEG00000019918)	IL12B (ENSCSEG00000019912)	ubtd2 (ENSCSEG00000019907)	ENSCSEG00000019904	ablim3 (ENSCSEG00000019869) ##22	afap1l1b (ENSCSEG00000019859)	fgf13b (ENSCSEG00000019840)	f9b (ENSCSEG00000019826)	MCF2 (ENSCSEG00000019810)	arr3a (ENSCSEG00000019793)	znrd2 (ENSCSEG00000019789)	ENSCSEG00000019780	ENSCSEG00000019760	ENSCSEG00000019756	dpp3 (ENSCSEG00000019735)	ENSCSEG00000019727	RAB39B (ENSCSEG00000019722)	ENSCSEG00000019720	ENSCSEG00000019707	rbm14a (ENSCSEG00000019690)
Turbot	MODERN SPECIES	16	ENSSMAG00000001953	ENSSMAG00000001966	ENSSMAG00000001983	ENSSMAG00000002055	ENSSMAG00000002131	ENSSMAG00000002154	ENSSMAG00000002252	ENSSMAG00000033947	ENSSMAG00000002279	EBF1 (ENSSMAG00000002578)	RNF145 (ENSSMAG00000002608)	ublcp1 (ENSSMAG00000002625)	IL12B (ENSSMAG00000002666)	ubtd2 (ENSSMAG00000002687)	ENSSMAG00000002705	ENSSMAG00000002722 ##22	ENSSMAG00000002828	fgf13b (ENSSMAG00000002856)	ENSSMAG00000002888	arr3a (ENSSMAG00000002928)	znrd2 (ENSSMAG00000002957)	ENSSMAG00000002970	ENSSMAG00000002865	STC2 (ENSSMAG00000002986)	ENSSMAG00000021794	CREBRF (ENSSMAG00000003032)	ENSSMAG00000003042	ENSSMAG00000003066	RFXAP (ENSSMAG00000003100)	dclk1a (ENSSMAG00000003113)	ENSSMAG00000030244
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Seriola	ANCESTRAL SPECIES	2	ENSGT00390000006030.d.a.a	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000175992
Greater amberjack	MODERN SPECIES	15	CLINT1 (ENSSDUG00000019673)	ENSSDUG00000019725	TCERG1 (ENSSDUG00000019753)	PCYOX1L (ENSSDUG00000019862)	CREBRF (ENSSDUG00000019886)	BNIP1 (ENSSDUG00000019948)	STC2 (ENSSDUG00000019965)	ENSSDUG00000019984	htatsf1 (ENSSDUG00000020002)	EBF1 (ENSSDUG00000020020)	RNF145 (ENSSDUG00000020056)	ublcp1 (ENSSDUG00000020092)	IL12B (ENSSDUG00000020130)	ubtd2 (ENSSDUG00000020150)	ADRB2 (ENSSDUG00000020160)	ablim3 (ENSSDUG00000020212) ##22	afap1l1b (ENSSDUG00000020317)	fgf13b (ENSSDUG00000020368)	f9b (ENSSDUG00000020377)	MCF2 (ENSSDUG00000020394)	arr3a (ENSSDUG00000020460)	znrd2 (ENSSDUG00000020640)	FAM89B (ENSSDUG00000020652)	ENSSDUG00000020657	ENSSDUG00000020670	ENSSDUG00000020686	dpp3 (ENSSDUG00000020699)	ENSSDUG00000020744	rbm14a (ENSSDUG00000020756)	ENSSDUG00000020778	ENSSDUG00000020799
Yellowtail amberjack	MODERN SPECIES	3182										EBF1 (ENSSLDG00000005360)	RNF145 (ENSSLDG00000005450)	ublcp1 (ENSSLDG00000005505)	IL12B (ENSSLDG00000005564)	ubtd2 (ENSSLDG00000005600)	ADRB2 (ENSSLDG00000005630)	ablim3 (ENSSLDG00000005644) ##22	afap1l1b (ENSSLDG00000005707)	fgf13b (ENSSLDG00000005756)	f9b (ENSSLDG00000005785)	MCF2 (ENSSLDG00000005831)	arr3a (ENSSLDG00000005892)	znrd2 (ENSSLDG00000005954)	FAM89B (ENSSLDG00000005992)	ENSSLDG00000006034	ENSSLDG00000006214	ENSSLDG00000006236	dpp3 (ENSSLDG00000006251)	ENSSLDG00000006297	rbm14a (ENSSLDG00000006311)	ENSSLDG00000006327	ENSSLDG00000006348
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	94	bod1 (ENSLCAG00010021113)	STC2 (ENSLCAG00010021108)	BNIP1 (ENSLCAG00010021103)	CREBRF (ENSLCAG00010021095)	PCYOX1L (ENSLCAG00010021088)	TCERG1 (ENSLCAG00010020910)	ENSLCAG00010020854	CLINT1 (ENSLCAG00010020851)	EBF1 (ENSLCAG00010020655)	RNF145 (ENSLCAG00010020593)	ublcp1 (ENSLCAG00010020583)	IL12B (ENSLCAG00010020580)	ubtd2 (ENSLCAG00010020575)	ADRB2 (ENSLCAG00010020568)	ENSLCAG00010020565 ##22	ablim3 (ENSLCAG00010020559) ##22	afap1l1b (ENSLCAG00010020555)	fgf13b (ENSLCAG00010020552)	f9b (ENSLCAG00010020548)	MCF2 (ENSLCAG00010020530)	arr3a (ENSLCAG00010020523)	znrd2 (ENSLCAG00010020521)	FAM89B (ENSLCAG00010020520)	ENSLCAG00010020519	EHBP1L1 (ENSLCAG00010020515)	ENSLCAG00010020510	ENSLCAG00010020508	ENSLCAG00010020506	dpp3 (ENSLCAG00010020416)	ENSLCAG00010020357	rbm14a (ENSLCAG00010020353)
Barramundi perch	MODERN SPECIES	94	htatsf1 (ENSLCAG00010021118)	bod1 (ENSLCAG00010021113)	STC2 (ENSLCAG00010021108)	BNIP1 (ENSLCAG00010021103)	CREBRF (ENSLCAG00010021095)	PCYOX1L (ENSLCAG00010021088)	TCERG1 (ENSLCAG00010020910)	ENSLCAG00010020854	CLINT1 (ENSLCAG00010020851)	EBF1 (ENSLCAG00010020655)	RNF145 (ENSLCAG00010020593)	ublcp1 (ENSLCAG00010020583)	IL12B (ENSLCAG00010020580)	ubtd2 (ENSLCAG00010020575)	ADRB2 (ENSLCAG00010020568)	ENSLCAG00010020565 ##22	ablim3 (ENSLCAG00010020559) ##22	afap1l1b (ENSLCAG00010020555)	fgf13b (ENSLCAG00010020552)	f9b (ENSLCAG00010020548)	MCF2 (ENSLCAG00010020530)	arr3a (ENSLCAG00010020523)	znrd2 (ENSLCAG00010020521)	FAM89B (ENSLCAG00010020520)	ENSLCAG00010020519	EHBP1L1 (ENSLCAG00010020515)	ENSLCAG00010020510	ENSLCAG00010020508	ENSLCAG00010020506	dpp3 (ENSLCAG00010020416)	ENSLCAG00010020357
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000161042	ENSGT00940000155650.a.b.e	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a	ENSGT00940000158132.m.b
Zig-zag eel	MODERN SPECIES	5	tpst1l (ENSMAMG00000021169)	ENSMAMG00000021172	ENSMAMG00000021183	ENSMAMG00000021200	CREBRF (ENSMAMG00000021202)	ENSMAMG00000021210	STC2 (ENSMAMG00000028227)	bod1 (ENSMAMG00000021222)	ENSMAMG00000021225	EBF1 (ENSMAMG00000021229)	RNF145 (ENSMAMG00000021243)	ublcp1 (ENSMAMG00000021251)	ENSMAMG00000021258	ubtd2 (ENSMAMG00000021262)	ENSMAMG00000028249	ENSMAMG00000021268 ##22	ENSMAMG00000021277	fgf13b (ENSMAMG00000021278)	f9b (ENSMAMG00000021280)	arr3a (ENSMAMG00000021288)	znrd2 (ENSMAMG00000021302)	ENSMAMG00000026960	ENSMAMG00000021305	ENSMAMG00000021306	ENSMAMG00000021308	ENSMAMG00000021310	ENSMAMG00000021313	ENSMAMG00000021319	ENSMAMG00000021324	RAB39B (ENSMAMG00000024637)	slc7a3a (ENSMAMG00000021333)
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000161042	ENSGT00940000155650.a.b.e	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a	ENSGT00940000158132.m.b	ENSGT00940000154651.a
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000008743	PCYOX1L (ENSBSLG00000008733)	CREBRF (ENSBSLG00000008717)	BNIP1 (ENSBSLG00000008712)	STC2 (ENSBSLG00000008694)	STC2 (ENSBSLG00000008679)	bod1 (ENSBSLG00000008667)	ENSBSLG00000008662	htatsf1 (ENSBSLG00000008470)	EBF1 (ENSBSLG00000007687)	RNF145 (ENSBSLG00000007668)	ublcp1 (ENSBSLG00000007663)	ENSBSLG00000007661	ubtd2 (ENSBSLG00000007655)	ENSBSLG00000007652	ablim3 (ENSBSLG00000007431) ##22	afap1l1b (ENSBSLG00000007409)	fgf13b (ENSBSLG00000007364)	fgf13b (ENSBSLG00000007304)	f9b (ENSBSLG00000007295)	MCF2 (ENSBSLG00000007277)	arr3a (ENSBSLG00000006943)	ENSBSLG00000006904	ENSBSLG00000006527	ENSBSLG00000005847	dpp3 (ENSBSLG00000005747)	ENSBSLG00000005721	rbm14a (ENSBSLG00000005705)	ENSBSLG00000004933	ENSBSLG00000004586	RAB39B (ENSBSLG00000004578)
Climbing perch	MODERN SPECIES	5	ENSATEG00000008713	ENSATEG00000026150	ENSATEG00000008799	ENSATEG00000008819	CREBRF (ENSATEG00000008829)	ENSATEG00000025959	STC2 (ENSATEG00000008869)	bod1 (ENSATEG00000028746)	ENSATEG00000008903	EBF1 (ENSATEG00000008930)	RNF145 (ENSATEG00000009011)	ublcp1 (ENSATEG00000009067)	IL12B (ENSATEG00000009107)	ubtd2 (ENSATEG00000009133)	ENSATEG00000026283	ENSATEG00000009150 ##22	ENSATEG00000009262	fgf13b (ENSATEG00000009279)	f9b (ENSATEG00000009307)	ENSATEG00000029303	arr3a (ENSATEG00000009399)	znrd2 (ENSATEG00000009457)	ENSATEG00000009536	ENSATEG00000009572	ENSATEG00000009590	ENSATEG00000009685	ENSATEG00000009700	ENSATEG00000009742	ENSATEG00000009786	ENSATEG00000009865	slc7a3a (ENSATEG00000009879)
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT00940000156341.e.a	ENSGT00940000154833.a	ENSGT00940000153460.c.b.c.b	ENSGT00940000164309	ENSGT00940000153609.a	ENSGT00940000154651.a	ENSGT00940000158132.m.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000157436.b	ENSGT00940000165459.b	ENSGT00390000007335	ENSGT00940000156996.f.b	ENSGT00390000004124.i	ENSGT00940000161027.a	ENSGT00390000013169	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00940000163509.b	ENSGT00510000047299.c	ENSGT00940000155158.q.b	ENSGT00390000000214.a.a.f	ENSGT00940000153997.b.a.b.c.b	ENSGT00940000164751.b	ENSGT00940000153733.A	ENSGT00940000155453	ENSGT00440000034259.b	ENSGT00390000005712
Tetraodon	MODERN SPECIES	22	CPEB4 (ENSTNIG00000018221)	ENSTNIG00000018222	fhl1b (ENSTNIG00000018223)	slc9a6b (ENSTNIG00000018224)	ENSTNIG00000018225	snx12 (ENSTNIG00000018226)	slc7a3a (ENSTNIG00000018227)	RAB39B (ENSTNIG00000018228)	ENSTNIG00000018229	rbm14a (ENSTNIG00000000058)	ENSTNIG00000018230	dpp3 (ENSTNIG00000018231)	ENSTNIG00000018232	ENSTNIG00000018233	znrd2 (ENSTNIG00000018234)	ABLIM3 (ENSTNIG00000018235) ##22	afap1l1b (ENSTNIG00000018236)	f9b (ENSTNIG00000006321)	ENSTNIG00000006322	arr3a (ENSTNIG00000006323)	ENSTNIG00000001709	pgap2 (ENSTNIG00000006324)	rhogb (ENSTNIG00000006325)	stim1b (ENSTNIG00000006326)	dub (ENSTNIG00000006327)	guca1d (ENSTNIG00000006328)	alg8 (ENSTNIG00000006329)	ENSTNIG00000004774	pcf11 (ENSTNIG00000004775)	ncbp3 (ENSTNIG00000004776)	rap1gap2b (ENSTNIG00000004777)
Fugu	MODERN SPECIES	6	ENSTRUG00000010653	fhl1b (ENSTRUG00000010547)	slc9a6b (ENSTRUG00000010179)	il2rg (ENSTRUG00000010161)	snx12 (ENSTRUG00000010136)	slc7a3 (ENSTRUG00000009937)	RAB39B (ENSTRUG00000009928)	ENSTRUG00000009540	rbm14a (ENSTRUG00000009504)	ENSTRUG00000023698	dpp3 (ENSTRUG00000009234)	ENSTRUG00000024781	ENSTRUG00000026511	ENSTRUG00000021318	znrd2 (ENSTRUG00000008927)	ABLIM3 (ENSTRUG00000027401) ##22	afap1l1b (ENSTRUG00000008171)	fgf13b (ENSTRUG00000007939)	f9b (ENSTRUG00000007324)	MCF2 (ENSTRUG00000006824)	arr3a (ENSTRUG00000005945)	zgc:56585 (ENSTRUG00000005890)	ENSTRUG00000024103	pgap2 (ENSTRUG00000005742)	rhogb (ENSTRUG00000029154)	stim1b (ENSTRUG00000005578)	dub (ENSTRUG00000021750)	guca1d (ENSTRUG00000005393)	ccdc90b (ENSTRUG00000004783)	pcf11 (ENSTRUG00000004419)	ncbp3 (ENSTRUG00000003769)
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	801																ablim3 (ENSLBEG00000006506) ##22	afap1l1b (ENSLBEG00000006438)	fgf13b (ENSLBEG00000006401)	f9b (ENSLBEG00000006344)	MCF2 (ENSLBEG00000006294)	arr3a (ENSLBEG00000006150)	znrd2 (ENSLBEG00000006073)	FAM89B (ENSLBEG00000006047)
Ballan wrasse	MODERN SPECIES	79	crcp (ENSLBEG00000000804)	tpst1l (ENSLBEG00000000840)	ENSLBEG00000000880	TCERG1 (ENSLBEG00000000954)	PCYOX1L (ENSLBEG00000000989)	CREBRF (ENSLBEG00000001041)	BNIP1 (ENSLBEG00000001098)	ENSLBEG00000001137	htatsf1 (ENSLBEG00000001154)	EBF1 (ENSLBEG00000001189)	RNF145 (ENSLBEG00000001256)	ublcp1 (ENSLBEG00000001310)	ENSLBEG00000001365	ubtd2 (ENSLBEG00000001406)	ADRB2 (ENSLBEG00000001430)	ENSLBEG00000001592 ##22
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Perciformes	ANCESTRAL SPECIES	22	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Cottioidei	ANCESTRAL SPECIES	10	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Lumpfish	MODERN SPECIES	5	tmtops3b (ENSCLMG00005014888)	ENSCLMG00005014951	TCERG1 (ENSCLMG00005014974)	PCYOX1L (ENSCLMG00005004338)	CREBRF (ENSCLMG00005004612)	BNIP1 (ENSCLMG00005004636)	STC2 (ENSCLMG00005004659)	bod1 (ENSCLMG00005004676)	htatsf1 (ENSCLMG00005004701)	EBF1 (ENSCLMG00005004801)	RNF145 (ENSCLMG00005004819)	ublcp1 (ENSCLMG00005004823)	IL12B (ENSCLMG00005004829)	ubtd2 (ENSCLMG00005004863)	ADRB2 (ENSCLMG00005004873)	ABLIM3 (ENSCLMG00005004981) ##22	afap1l1b (ENSCLMG00005004996)	fgf13b (ENSCLMG00005005005)	f9b (ENSCLMG00005005044)	MCF2 (ENSCLMG00005005267)	arr3a (ENSCLMG00005005270)	znrd2 (ENSCLMG00005005273)	FAM89B (ENSCLMG00005005274)	EHBP1L1 (ENSCLMG00005005276)	ENSCLMG00005005288	ENSCLMG00005005451	dpp3 (ENSCLMG00005005471)	ENSCLMG00005005604	rbm14a (ENSCLMG00005005605)	ENSCLMG00005005607	ENSCLMG00005005609
Stickleback	MODERN SPECIES	7	tpst1l (ENSGACG00000020467)	tmtops3b (ENSGACG00000020466)	ENSGACG00000020465	TCERG1 (ENSGACG00000020464)	PCYOX1L (ENSGACG00000020463)	CREBRF (ENSGACG00000020462)	BNIP1 (ENSGACG00000020461)	bod1 (ENSGACG00000020460)	htatsf1 (ENSGACG00000020459)	EBF1 (ENSGACG00000020458)	RNF145 (ENSGACG00000020457)	ublcp1 (ENSGACG00000020456)	IL12B (ENSGACG00000020455)	ubtd2 (ENSGACG00000020454)	ADRB2 (ENSGACG00000020453)	ablim3 (ENSGACG00000020452) ##22	afap1l1b (ENSGACG00000020451)	fgf13b (ENSGACG00000020450)	f9b (ENSGACG00000020449)	ENSGACG00000020448	MCF2 (ENSGACG00000020447)	arr3a (ENSGACG00000020446)	znrd2 (ENSGACG00000020445)	ENSGACG00000020444	ENSGACG00000020443	ENSGACG00000020442	dpp3 (ENSGACG00000020441)	rbm14a (ENSGACG00000020440)	ENSGACG00000020439	ENSGACG00000020438	RAB39B (ENSGACG00000020437)
Perciformes_a	ANCESTRAL SPECIES	20	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Channel bull blenny	MODERN SPECIES	5	ENSCGOG00000014705	ENSCGOG00000014707	TCERG1 (ENSCGOG00000014714)	PCYOX1L (ENSCGOG00000014943)	CREBRF (ENSCGOG00000014949)	BNIP1 (ENSCGOG00000014957)	STC2 (ENSCGOG00000014964)	bod1 (ENSCGOG00000014976)	htatsf1 (ENSCGOG00000014980)	EBF1 (ENSCGOG00000001634)	RNF145 (ENSCGOG00000001840)	ublcp1 (ENSCGOG00000001909)	IL12B (ENSCGOG00000002018)	ubtd2 (ENSCGOG00000002024)	ADRB2 (ENSCGOG00000002027)	ablim3 (ENSCGOG00000002042) ##22	afap1l1b (ENSCGOG00000002048)	fgf13b (ENSCGOG00000002054)	f9b (ENSCGOG00000002069)	MCF2 (ENSCGOG00000002108)	arr3a (ENSCGOG00000002149)	znrd2 (ENSCGOG00000002199)	FAM89B (ENSCGOG00000002201)	ENSCGOG00000002205	ENSCGOG00000002218	ENSCGOG00000002251	dpp3 (ENSCGOG00000002275)	ENSCGOG00000003731	rbm14a (ENSCGOG00000003732)	ENSCGOG00000003802	ENSCGOG00000005940
Pike perch	MODERN SPECIES	54	ENSSLUG00000002966	ENSSLUG00000002914	TCERG1 (ENSSLUG00000002376)	PCYOX1L (ENSSLUG00000002331)	CREBRF (ENSSLUG00000002328)	BNIP1 (ENSSLUG00000002323)	STC2 (ENSSLUG00000002300)	bod1 (ENSSLUG00000002291)	htatsf1 (ENSSLUG00000002251)	EBF1 (ENSSLUG00000002218)	RNF145 (ENSSLUG00000002193)	ublcp1 (ENSSLUG00000002180)	IL12B (ENSSLUG00000002170)	ubtd2 (ENSSLUG00000002159)	ADRB2 (ENSSLUG00000002154)	ablim3 (ENSSLUG00000002122) ##22	afap1l1b (ENSSLUG00000002083)	fgf13b (ENSSLUG00000002001)	f9b (ENSSLUG00000001995)	MCF2 (ENSSLUG00000001968)	arr3a (ENSSLUG00000001877)	znrd2 (ENSSLUG00000001844)	FAM89B (ENSSLUG00000001839)	ENSSLUG00000001830	ENSSLUG00000001820	ENSSLUG00000001816	ENSSLUG00000001803	dpp3 (ENSSLUG00000001703)	ENSSLUG00000001536	rbm14a (ENSSLUG00000001525)	ENSSLUG00000025078
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Gilthead seabream	MODERN SPECIES	4	bod1 (ENSSAUG00010011927)	STC2 (ENSSAUG00010011922)	BNIP1 (ENSSAUG00010011920)	CREBRF (ENSSAUG00010011917)	PCYOX1L (ENSSAUG00010011914)	TCERG1 (ENSSAUG00010011896)	CLINT1 (ENSSAUG00010011892)	crcp (ENSSAUG00010011882)	EBF1 (ENSSAUG00010011838)	RNF145 (ENSSAUG00010011831)	ublcp1 (ENSSAUG00010011828)	IL12B (ENSSAUG00010011827)	ubtd2 (ENSSAUG00010011825)	ADRB2 (ENSSAUG00010011822)	ENSSAUG00010011821	ablim3 (ENSSAUG00010011815) ##22	afap1l1b (ENSSAUG00010011804)	fgf13b (ENSSAUG00010011799)	ENSSAUG00010011795	arr3a (ENSSAUG00010011383)	znrd2 (ENSSAUG00010011373)	FAM89B (ENSSAUG00010011372)	ENSSAUG00010011366	ENSSAUG00010011361	ENSSAUG00010011359	dpp3 (ENSSAUG00010011265)	ENSSAUG00010011260	rbm14a (ENSSAUG00010011259)	f9b (ENSSAUG00010011257)	ENSSAUG00010011248	ENSSAUG00010011243
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
European seabass	MODERN SPECIES	4	ENSDLAG00005000699	ENSDLAG00005000717	ENSDLAG00005000723	ENSDLAG00005000752	ENSDLAG00005031176	ENSDLAG00005034378	BNIP1 (ENSDLAG00005028746)	ENSDLAG00005029702	ENSDLAG00005000984	EBF1 (ENSDLAG00005001006)	RNF145 (ENSDLAG00005001084)	ublcp1 (ENSDLAG00005001095)	IL12B (ENSDLAG00005001099)	ubtd2 (ENSDLAG00005034075)	ENSDLAG00005001112	ENSDLAG00005001118 ##22	ENSDLAG00005001131	fgf13b (ENSDLAG00005001154)	f9b (ENSDLAG00005028462)	MCF2 (ENSDLAG00005001180)	arr3a (ENSDLAG00005001553)	ENSDLAG00005027186	ENSDLAG00005029223	ENSDLAG00005001826	ENSDLAG00005001837	ENSDLAG00005001861	ENSDLAG00005001966	ENSDLAG00005001969	ENSDLAG00005002017	ENSDLAG00005029067	ENSDLAG00005002305
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Oryzias	ANCESTRAL SPECIES	14	ENSGT00390000006030.d.a.a	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00390000006030.d.a.a	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a	ENSGT00940000158132.m.b
Japanese Medaka HdrR	MODERN SPECIES	5	tpst1l (ENSORLG00000002471)	tmtops3b (ENSORLG00000023227)	CLINT1 (ENSORLG00000002460)	TCERG1 (ENSORLG00000002439)	PCYOX1L (ENSORLG00000002404)	CREBRF (ENSORLG00000002384)	BNIP1 (ENSORLG00000002369)	bod1 (ENSORLG00000025671)	htatsf1 (ENSORLG00000002356)	EBF1 (ENSORLG00000002342)	RNF145 (ENSORLG00000002282)	ublcp1 (ENSORLG00000002261)	IL12B (ENSORLG00000002238)	ubtd2 (ENSORLG00000025523)	ENSORLG00000002214	ENSORLG00000002194 ##22	afap1l1b (ENSORLG00000002101)	fgf13b (ENSORLG00000002061)	f9b (ENSORLG00000024715)	ENSORLG00000024912	MCF2 (ENSORLG00000002026)	arr3a (ENSORLG00000001983)	znrd2 (ENSORLG00000023825)	ENSORLG00000028902	ENSORLG00000030006	ENSORLG00000024591	ENSORLG00000001955	ENSORLG00000024145	dpp3 (ENSORLG00000001951)	rbm14a (ENSORLG00000001900)	ENSORLG00000001890
Chinese medaka	MODERN SPECIES	1285															ADRB2 (ENSOSIG00000017868)	ablim3 (ENSOSIG00000017879) ##22	afap1l1b (ENSOSIG00000017880)	fgf13b (ENSOSIG00000017887)	f9b (ENSOSIG00000017889)	MCF2 (ENSOSIG00000017900)	arr3a (ENSOSIG00000018026)	znrd2 (ENSOSIG00000018660)	ENSOSIG00000018679	ENSOSIG00000018700	ENSOSIG00000018704	dpp3 (ENSOSIG00000018720)	ENSOSIG00000018782	rbm14a (ENSOSIG00000018784)	ENSOSIG00000018818	ENSOSIG00000019989	RAB39B (ENSOSIG00000019992)
Oryzias_b	ANCESTRAL SPECIES	13	ENSGT00390000006030.d.a.a	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Javanese ricefish	MODERN SPECIES	5	tmtops3b (ENSOJAG00000006034)	CLINT1 (ENSOJAG00000006155)	TCERG1 (ENSOJAG00000006210)	PCYOX1L (ENSOJAG00000006386)	CREBRF (ENSOJAG00000006413)	BNIP1 (ENSOJAG00000006433)	ENSOJAG00000006455	bod1 (ENSOJAG00000006467)	htatsf1 (ENSOJAG00000006497)	EBF1 (ENSOJAG00000006781)	RNF145 (ENSOJAG00000008356)	ublcp1 (ENSOJAG00000008495)	ENSOJAG00000008524	ubtd2 (ENSOJAG00000008586)	ADRB2 (ENSOJAG00000008607)	ablim3 (ENSOJAG00000008739) ##22	afap1l1b (ENSOJAG00000008773)	fgf13b (ENSOJAG00000008788)	f9b (ENSOJAG00000008834)	ENSOJAG00000008845	MCF2 (ENSOJAG00000008879)	arr3a (ENSOJAG00000009086)	znrd2 (ENSOJAG00000009555)	ENSOJAG00000009559	ENSOJAG00000009568	ENSOJAG00000009588	ENSOJAG00000009612	dpp3 (ENSOJAG00000009649)	ENSOJAG00000009868	rbm14a (ENSOJAG00000010029)	ENSOJAG00000010055
Indian medaka	MODERN SPECIES	4	tpst1l (ENSOMEG00000007967)	tmtops3b (ENSOMEG00000007938)	CLINT1 (ENSOMEG00000007904)	TCERG1 (ENSOMEG00000007795)	PCYOX1L (ENSOMEG00000007716)	CREBRF (ENSOMEG00000000190)	BNIP1 (ENSOMEG00000007608)	bod1 (ENSOMEG00000007588)	htatsf1 (ENSOMEG00000007564)	EBF1 (ENSOMEG00000007507)	RNF145 (ENSOMEG00000007416)	ublcp1 (ENSOMEG00000007357)	IL12B (ENSOMEG00000007298)	ubtd2 (ENSOMEG00000007255)	ADRB2 (ENSOMEG00000007249)	ablim3 (ENSOMEG00000007193) ##22	afap1l1b (ENSOMEG00000007075)	fgf13b (ENSOMEG00000007025)	f9b (ENSOMEG00000007003)	tert (ENSOMEG00000006967)	MCF2 (ENSOMEG00000006840)	arr3a (ENSOMEG00000006803)	znrd2 (ENSOMEG00000006765)	ENSOMEG00000006734	ENSOMEG00000006664	ENSOMEG00000006620	dpp3 (ENSOMEG00000006610)	ENSOMEG00000006537	rbm14a (ENSOMEG00000006508)	ENSOMEG00000006405	ENSOMEG00000006344
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i.b	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000175992
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i.b	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000175992
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000175992	ENSGT00940000165121.a
Poecilia	ANCESTRAL SPECIES	7	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000175992	ENSGT00940000165121.a
Guppy	DUPLICATION
Guppy	MODERN SPECIES	444	tmtops3b (ENSPREG00000008102)	ENSPREG00000008013	TCERG1 (ENSPREG00000007921)	PCYOX1L (ENSPREG00000007899)	CREBRF (ENSPREG00000007884)	BNIP1 (ENSPREG00000007862)	bod1 (ENSPREG00000007838)	htatsf1 (ENSPREG00000007811)	EBF1 (ENSPREG00000007760)	RNF145 (ENSPREG00000007712)	ublcp1 (ENSPREG00000007679)	IL12B (ENSPREG00000007646)	ubtd2 (ENSPREG00000007621)	ENSPREG00000007607	ABLIM3 (ENSPREG00000007581) ##22	ENSPREG00000007561 ##22	fgf13b (ENSPREG00000007543)	f9b (ENSPREG00000007455)	znrd2 (ENSPREG00000007391)	ENSPREG00000007374	ENSPREG00000007366	dpp3 (ENSPREG00000007298)	rbm14a (ENSPREG00000007274)	ENSPREG00000007181	ENSPREG00000007150	RAB39B (ENSPREG00000007129)	slc7a3a (ENSPREG00000007114)	ENSPREG00000007082	slc9a6b (ENSPREG00000006340)	fhl1b (ENSPREG00000006263)	ENSPREG00000006255
Guppy	MODERN SPECIES	444	tpst1l (ENSPREG00000008413)	tmtops3b (ENSPREG00000008102)	ENSPREG00000008013	TCERG1 (ENSPREG00000007921)	PCYOX1L (ENSPREG00000007899)	CREBRF (ENSPREG00000007884)	BNIP1 (ENSPREG00000007862)	bod1 (ENSPREG00000007838)	htatsf1 (ENSPREG00000007811)	EBF1 (ENSPREG00000007760)	RNF145 (ENSPREG00000007712)	ublcp1 (ENSPREG00000007679)	IL12B (ENSPREG00000007646)	ubtd2 (ENSPREG00000007621)	ENSPREG00000007607	ABLIM3 (ENSPREG00000007581) ##22	ENSPREG00000007561 ##22	fgf13b (ENSPREG00000007543)	f9b (ENSPREG00000007455)	znrd2 (ENSPREG00000007391)	ENSPREG00000007374	ENSPREG00000007366	dpp3 (ENSPREG00000007298)	rbm14a (ENSPREG00000007274)	ENSPREG00000007181	ENSPREG00000007150	RAB39B (ENSPREG00000007129)	slc7a3a (ENSPREG00000007114)	ENSPREG00000007082	slc9a6b (ENSPREG00000006340)	fhl1b (ENSPREG00000006263)
NAME_6	ANCESTRAL SPECIES	1	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000175992	ENSGT00940000165121.a
Sailfin molly	MODERN SPECIES	87					ENSPLAG00000018510	tomt (ENSPLAG00000018490)	anapc15 (ENSPLAG00000018477)	folr (ENSPLAG00000018473)	inppl1a (ENSPLAG00000018457)	phox2a (ENSPLAG00000018346)	CLPB (ENSPLAG00000018334)	stard10 (ENSPLAG00000018324)	ARAP1 (ENSPLAG00000018306)	ENSPLAG00000018286	ADRB2 (ENSPLAG00000018276)	ablim3 (ENSPLAG00000018246) ##22	afap1l1b (ENSPLAG00000018004)	fgf13b (ENSPLAG00000017978)	f9b (ENSPLAG00000017940)	MCF2 (ENSPLAG00000017598)	arr3a (ENSPLAG00000017586)	znrd2 (ENSPLAG00000017560)	FAM89B (ENSPLAG00000017555)	EHBP1L1 (ENSPLAG00000017547)	ENSPLAG00000017458	dpp3 (ENSPLAG00000017419)	ENSPLAG00000017368	rbm14a (ENSPLAG00000017359)
Amazon molly	MODERN SPECIES	255	tmtops3b (ENSPFOG00000008567)	TCERG1 (ENSPFOG00000008374)	PCYOX1L (ENSPFOG00000008275)	CREBRF (ENSPFOG00000008174)	BNIP1 (ENSPFOG00000008074)	STC2 (ENSPFOG00000008043)	STC2 (ENSPFOG00000023652)	bod1 (ENSPFOG00000008031)	htatsf1 (ENSPFOG00000007871)	EBF1 (ENSPFOG00000007531)	RNF145 (ENSPFOG00000007292)	ublcp1 (ENSPFOG00000007186)	IL12B (ENSPFOG00000007116)	ubtd2 (ENSPFOG00000007096)	ADRB2 (ENSPFOG00000007036)	ABLIM3 (ENSPFOG00000006596) ##22	afap1l1b (ENSPFOG00000006277)	fgf13b (ENSPFOG00000006203)	f9b (ENSPFOG00000006072)	MCF2 (ENSPFOG00000005613)	arr3a (ENSPFOG00000005241)	znrd2 (ENSPFOG00000005175)	FAM89B (ENSPFOG00000005167)	EHBP1L1 (ENSPFOG00000005065)	ENSPFOG00000005048	dpp3 (ENSPFOG00000004916)	rbm14a (ENSPFOG00000004843)	ENSPFOG00000004606	ENSPFOG00000004534	RAB39B (ENSPFOG00000004492)	slc7a3a (ENSPFOG00000004316)
Platyfish	MODERN SPECIES	2	ENSXMAG00000027186	ENSXMAG00000000532	TCERG1 (ENSXMAG00000000519)	PCYOX1L (ENSXMAG00000027639)	CREBRF (ENSXMAG00000000504)	BNIP1 (ENSXMAG00000000497)	STC2 (ENSXMAG00000000495)	bod1 (ENSXMAG00000022469)	htatsf1 (ENSXMAG00000000490)	EBF1 (ENSXMAG00000000489)	RNF145 (ENSXMAG00000000480)	ublcp1 (ENSXMAG00000025933)	IL12B (ENSXMAG00000000474)	ubtd2 (ENSXMAG00000026332)	ADRB2 (ENSXMAG00000000470)	ablim3 (ENSXMAG00000000456) ##22	afap1l1b (ENSXMAG00000000445)	fgf13b (ENSXMAG00000000441)	f9b (ENSXMAG00000000424)	MCF2 (ENSXMAG00000000404)	arr3a (ENSXMAG00000000387)	znrd2 (ENSXMAG00000000384)	FAM89B (ENSXMAG00000000383)	ENSXMAG00000028134	ENSXMAG00000027013	dpp3 (ENSXMAG00000000342)	rbm14a (ENSXMAG00000000338)	ENSXMAG00000023871	ENSXMAG00000000328	ENSXMAG00000000327	RAB39B (ENSXMAG00000000325)
NAME_4	ANCESTRAL SPECIES	12	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i.b	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Sheepshead minnow	MODERN SPECIES	206	tpst1l (ENSCVAG00000013647)	ENSCVAG00000013673	TCERG1 (ENSCVAG00000013825)	PCYOX1L (ENSCVAG00000013866)	CREBRF (ENSCVAG00000013884)	BNIP1 (ENSCVAG00000013923)	STC2 (ENSCVAG00000013998)	bod1 (ENSCVAG00000014044)	htatsf1 (ENSCVAG00000014070)	EBF1 (ENSCVAG00000014113)	RNF145 (ENSCVAG00000014162)	ublcp1 (ENSCVAG00000014220)	IL12B (ENSCVAG00000014229)	ubtd2 (ENSCVAG00000014249)	ADRB2 (ENSCVAG00000014254)	ablim3 (ENSCVAG00000014437) ##22	afap1l1b (ENSCVAG00000014453)	fgf13b (ENSCVAG00000014484)	f9b (ENSCVAG00000014495)	MCF2 (ENSCVAG00000014560)	arr3a (ENSCVAG00000014576)	znrd2 (ENSCVAG00000014581)	FAM89B (ENSCVAG00000014584)	ENSCVAG00000014598	ENSCVAG00000000370	ENSCVAG00000014695	ENSCVAG00000014702	dpp3 (ENSCVAG00000014773)	ENSCVAG00000014790	rbm14a (ENSCVAG00000014858)	ENSCVAG00000014880
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	403														ubtd2 (ENSFHEG00000022399)	ADRB2 (ENSFHEG00000022386)	ENSFHEG00000022362 ##22	ENSFHEG00000022350 ##22	afap1l1b (ENSFHEG00000022326)	fgf13b (ENSFHEG00000022293)	f9b (ENSFHEG00000022273)	MCF2 (ENSFHEG00000022230)	arr3a (ENSFHEG00000021032)	znrd2 (ENSFHEG00000020993)	ENSFHEG00000020980	ENSFHEG00000020974	RCE1 (ENSFHEG00000020964)	ENSFHEG00000000520	dpp3 (ENSFHEG00000020932)	ENSFHEG00000020925	rbm14a (ENSFHEG00000020913)	ENSFHEG00000020902
Mummichog	MODERN SPECIES	403													ubtd2 (ENSFHEG00000022399)	ADRB2 (ENSFHEG00000022386)	ENSFHEG00000022362 ##22	ENSFHEG00000022350 ##22	afap1l1b (ENSFHEG00000022326)	fgf13b (ENSFHEG00000022293)	f9b (ENSFHEG00000022273)	MCF2 (ENSFHEG00000022230)	arr3a (ENSFHEG00000021032)	znrd2 (ENSFHEG00000020993)	ENSFHEG00000020980	ENSFHEG00000020974	RCE1 (ENSFHEG00000020964)	ENSFHEG00000000520	dpp3 (ENSFHEG00000020932)	ENSFHEG00000020925	rbm14a (ENSFHEG00000020913)	ENSFHEG00000020902	ENSFHEG00000020882
Aplocheiloidei	ANCESTRAL SPECIES	35	ENSGT01100000263502.A.a.a.a.a.b	ENSGT00940000155650.a.b	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00390000004124.i.b	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a	ENSGT00940000158132.m.b
Turquoise killifish	MODERN SPECIES	1620	TCERG1 (ENSNFUG00015008923)	PCYOX1L (ENSNFUG00015008860)	CREBRF (ENSNFUG00015008855)	BNIP1 (ENSNFUG00015008846)	CABZ01034707.1 (ENSNFUG00015008839)	BOD1 (ENSNFUG00015008836)	HTATSF1 (ENSNFUG00015008749)	EBF1 (ENSNFUG00015008709)	ENSNFUG00015008696	ENSNFUG00015008691	RNF145 (ENSNFUG00015008678)	UBLCP1 (ENSNFUG00015008670)	IL12BB (ENSNFUG00015008661)	UBTD2 (ENSNFUG00015008654)	ADRB2B (ENSNFUG00015008648)	ablim3 (ENSNFUG00015008641) ##22	AFAP1L1B (ENSNFUG00015008640)	OLA.13760 (ENSNFUG00015008638)	f9b (ENSNFUG00015008636)	ENSNFUG00015008634	MCF2B (ENSNFUG00015008350)	ARR3A (ENSNFUG00015008125)	SSSCA1 (ENSNFUG00015008104)	ENSNFUG00015008095	ENSNFUG00015008094	ENSNFUG00015007991	Nfu_g_1_005373 (ENSNFUG00015007966)	DPP3 (ENSNFUG00015007938)	ENSNFUG00015007927	rbm14a (ENSNFUG00015007924)	ENSNFUG00015007919
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	58	ENSKMAG00000007423	TCERG1 (ENSKMAG00000007448)	PCYOX1L (ENSKMAG00000007492)	CREBRF (ENSKMAG00000007522)	BNIP1 (ENSKMAG00000007566)	STC2 (ENSKMAG00000007593)	bod1 (ENSKMAG00000007608)	htatsf1 (ENSKMAG00000007622)	EBF1 (ENSKMAG00000007667)	RNF145 (ENSKMAG00000007773)	ublcp1 (ENSKMAG00000007828)	IL12B (ENSKMAG00000007875)	ubtd2 (ENSKMAG00000007896)	ADRB2 (ENSKMAG00000007924)	ENSKMAG00000007935 ##22	ablim3 (ENSKMAG00000007970) ##22	afap1l1b (ENSKMAG00000008026)	fgf13b (ENSKMAG00000008064)	f9b (ENSKMAG00000008098)	MCF2 (ENSKMAG00000008123)	arr3a (ENSKMAG00000008151)	znrd2 (ENSKMAG00000008182)	ENSKMAG00000008225	ENSKMAG00000008349	ENSKMAG00000008389	dpp3 (ENSKMAG00000008424)	ENSKMAG00000008499	rbm14a (ENSKMAG00000008514)	ENSKMAG00000008552	ENSKMAG00000008611	RAB39B (ENSKMAG00000008625)
Mangrove rivulus	MODERN SPECIES	58	ENSKMAG00000007406	ENSKMAG00000007423	TCERG1 (ENSKMAG00000007448)	PCYOX1L (ENSKMAG00000007492)	CREBRF (ENSKMAG00000007522)	BNIP1 (ENSKMAG00000007566)	STC2 (ENSKMAG00000007593)	bod1 (ENSKMAG00000007608)	htatsf1 (ENSKMAG00000007622)	EBF1 (ENSKMAG00000007667)	RNF145 (ENSKMAG00000007773)	ublcp1 (ENSKMAG00000007828)	IL12B (ENSKMAG00000007875)	ubtd2 (ENSKMAG00000007896)	ADRB2 (ENSKMAG00000007924)	ENSKMAG00000007935 ##22	ablim3 (ENSKMAG00000007970) ##22	afap1l1b (ENSKMAG00000008026)	fgf13b (ENSKMAG00000008064)	f9b (ENSKMAG00000008098)	MCF2 (ENSKMAG00000008123)	arr3a (ENSKMAG00000008151)	znrd2 (ENSKMAG00000008182)	ENSKMAG00000008225	ENSKMAG00000008349	ENSKMAG00000008389	dpp3 (ENSKMAG00000008424)	ENSKMAG00000008499	rbm14a (ENSKMAG00000008514)	ENSKMAG00000008552	ENSKMAG00000008611
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	22	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Lyretail cichlid	MODERN SPECIES	297	tmtops3b (ENSNBRG00000003163)	ENSNBRG00000003331	ENSNBRG00000003369	TCERG1 (ENSNBRG00000003409)	PCYOX1L (ENSNBRG00000003661)	CREBRF (ENSNBRG00000003698)	BNIP1 (ENSNBRG00000003746)	ENSNBRG00000003779	htatsf1 (ENSNBRG00000003818)	EBF1 (ENSNBRG00000003853)	RNF145 (ENSNBRG00000003907)	ublcp1 (ENSNBRG00000003982)	IL12B (ENSNBRG00000004011)	ubtd2 (ENSNBRG00000004032)	ADRB2 (ENSNBRG00000004061)	ablim3 (ENSNBRG00000004085) ##22	afap1l1b (ENSNBRG00000004182)	fgf13b (ENSNBRG00000004284)	f9b (ENSNBRG00000004304)	MCF2 (ENSNBRG00000004320)	arr3a (ENSNBRG00000004388)	znrd2 (ENSNBRG00000004693)	ENSNBRG00000004721	ENSNBRG00000004786	ENSNBRG00000004809	dpp3 (ENSNBRG00000004854)	ENSNBRG00000004929	rbm14a (ENSNBRG00000004960)	ENSNBRG00000004992	ENSNBRG00000005019	RAB39B (ENSNBRG00000005082)
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	321	tpst1l (ENSPNYG00000016957)	tmtops3b (ENSPNYG00000016902)	ENSPNYG00000016867	ENSPNYG00000016846	TCERG1 (ENSPNYG00000016818)	PCYOX1L (ENSPNYG00000016803)	CREBRF (ENSPNYG00000016767)	BNIP1 (ENSPNYG00000016750)	ENSPNYG00000016725	htatsf1 (ENSPNYG00000016693)	EBF1 (ENSPNYG00000016643)	ublcp1 (ENSPNYG00000016605)	IL12B (ENSPNYG00000016585)	ubtd2 (ENSPNYG00000016542)	ADRB2 (ENSPNYG00000016532)	ABLIM3 (ENSPNYG00000016482) ##22	ENSPNYG00000016458 ##22	afap1l1b (ENSPNYG00000016417)	fgf13b (ENSPNYG00000016380)	f9b (ENSPNYG00000016364)	MCF2 (ENSPNYG00000016299)	arr3a (ENSPNYG00000016254)	znrd2 (ENSPNYG00000016233)	ENSPNYG00000016088	ENSPNYG00000016038	ENSPNYG00000016023	ENSPNYG00000015996	dpp3 (ENSPNYG00000015935)	ENSPNYG00000015920	rbm14a (ENSPNYG00000015906)	ENSPNYG00000015865
P. nyererei	MODERN SPECIES	321	tmtops3b (ENSPNYG00000016902)	ENSPNYG00000016867	ENSPNYG00000016846	TCERG1 (ENSPNYG00000016818)	PCYOX1L (ENSPNYG00000016803)	CREBRF (ENSPNYG00000016767)	BNIP1 (ENSPNYG00000016750)	ENSPNYG00000016725	htatsf1 (ENSPNYG00000016693)	EBF1 (ENSPNYG00000016643)	ublcp1 (ENSPNYG00000016605)	IL12B (ENSPNYG00000016585)	ubtd2 (ENSPNYG00000016542)	ADRB2 (ENSPNYG00000016532)	ABLIM3 (ENSPNYG00000016482) ##22	ENSPNYG00000016458 ##22	afap1l1b (ENSPNYG00000016417)	fgf13b (ENSPNYG00000016380)	f9b (ENSPNYG00000016364)	MCF2 (ENSPNYG00000016299)	arr3a (ENSPNYG00000016254)	znrd2 (ENSPNYG00000016233)	ENSPNYG00000016088	ENSPNYG00000016038	ENSPNYG00000016023	ENSPNYG00000015996	dpp3 (ENSPNYG00000015935)	ENSPNYG00000015920	rbm14a (ENSPNYG00000015906)	ENSPNYG00000015865	ENSPNYG00000015807
Haplochromini_B	ANCESTRAL SPECIES	16	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a	ENSGT00940000158132.m.b
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1092	ENSMZEG00005025262	ENSMZEG00005025265	TCERG1 (ENSMZEG00005025267)	PCYOX1L (ENSMZEG00005025274)	CREBRF (ENSMZEG00005025280)	BNIP1 (ENSMZEG00005025287)	STC2 (ENSMZEG00005000115)	bod1 (ENSMZEG00005000477)	htatsf1 (ENSMZEG00005000485)	EBF1 (ENSMZEG00005000538)	RNF145 (ENSMZEG00005000588)	ublcp1 (ENSMZEG00005000662)	IL12B (ENSMZEG00005000714)	ubtd2 (ENSMZEG00005000741)	ADRB2 (ENSMZEG00005000756)	ABLIM3 (ENSMZEG00005000761) ##22	ENSMZEG00005000796 ##22	afap1l1b (ENSMZEG00005000815)	fgf13b (ENSMZEG00005000828)	f9b (ENSMZEG00005000838)	MCF2 (ENSMZEG00005000848)	arr3a (ENSMZEG00005000912)	znrd2 (ENSMZEG00005000923)	ENSMZEG00005000973	ENSMZEG00005001114	ENSMZEG00005001121	dpp3 (ENSMZEG00005001130)	ENSMZEG00005001186	rbm14a (ENSMZEG00005001201)	ENSMZEG00005001219	ENSMZEG00005001267
Zebra mbuna	MODERN SPECIES	1092	ENSMZEG00005025265	TCERG1 (ENSMZEG00005025267)	PCYOX1L (ENSMZEG00005025274)	CREBRF (ENSMZEG00005025280)	BNIP1 (ENSMZEG00005025287)	STC2 (ENSMZEG00005000115)	bod1 (ENSMZEG00005000477)	htatsf1 (ENSMZEG00005000485)	EBF1 (ENSMZEG00005000538)	RNF145 (ENSMZEG00005000588)	ublcp1 (ENSMZEG00005000662)	IL12B (ENSMZEG00005000714)	ubtd2 (ENSMZEG00005000741)	ADRB2 (ENSMZEG00005000756)	ABLIM3 (ENSMZEG00005000761) ##22	ENSMZEG00005000796 ##22	afap1l1b (ENSMZEG00005000815)	fgf13b (ENSMZEG00005000828)	f9b (ENSMZEG00005000838)	MCF2 (ENSMZEG00005000848)	arr3a (ENSMZEG00005000912)	znrd2 (ENSMZEG00005000923)	ENSMZEG00005000973	ENSMZEG00005001114	ENSMZEG00005001121	dpp3 (ENSMZEG00005001130)	ENSMZEG00005001186	rbm14a (ENSMZEG00005001201)	ENSMZEG00005001219	ENSMZEG00005001267	RAB39B (ENSMZEG00005002185)
Eastern happy	MODERN SPECIES	1	ENSACLG00000007689	TCERG1 (ENSACLG00000007702)	PCYOX1L (ENSACLG00000007754)	CREBRF (ENSACLG00000007766)	BNIP1 (ENSACLG00000007807)	ENSACLG00000008086	htatsf1 (ENSACLG00000008096)	EBF1 (ENSACLG00000008113)	ENSACLG00000008129	ENSACLG00000008130	RNF145 (ENSACLG00000008134)	ublcp1 (ENSACLG00000008166)	IL12B (ENSACLG00000008190)	ubtd2 (ENSACLG00000008197)	ADRB2 (ENSACLG00000008511)	ablim3 (ENSACLG00000008513) ##22	afap1l1b (ENSACLG00000008529)	fgf13b (ENSACLG00000008552)	f9b (ENSACLG00000008559)	MCF2 (ENSACLG00000008594)	arr3a (ENSACLG00000008617)	znrd2 (ENSACLG00000008671)	ENSACLG00000008688	ENSACLG00000008975	ENSACLG00000008998	dpp3 (ENSACLG00000009003)	ENSACLG00000009093	rbm14a (ENSACLG00000009112)	ENSACLG00000009386	ENSACLG00000009465	RAB39B (ENSACLG00000009468)
Burton s mouthbrooder	MODERN SPECIES	347	tmtops3b (ENSHBUG00000004742)	ENSHBUG00000004665	ENSHBUG00000004619	TCERG1 (ENSHBUG00000004587)	PCYOX1L (ENSHBUG00000004569)	CREBRF (ENSHBUG00000004512)	BNIP1 (ENSHBUG00000004466)	ENSHBUG00000004421	htatsf1 (ENSHBUG00000004392)	EBF1 (ENSHBUG00000004347)	RNF145 (ENSHBUG00000004241)	ublcp1 (ENSHBUG00000000106)	IL12B (ENSHBUG00000004166)	ubtd2 (ENSHBUG00000004137)	ADRB2 (ENSHBUG00000004125)	ablim3 (ENSHBUG00000004111) ##22	afap1l1b (ENSHBUG00000004020)	fgf13b (ENSHBUG00000003999)	f9b (ENSHBUG00000003960)	MCF2 (ENSHBUG00000003923)	arr3a (ENSHBUG00000003900)	znrd2 (ENSHBUG00000003845)	ENSHBUG00000003820	ENSHBUG00000003762	ENSHBUG00000003750	dpp3 (ENSHBUG00000003735)	ENSHBUG00000003675	rbm14a (ENSHBUG00000003665)	ENSHBUG00000000085	ENSHBUG00000003548	RAB39B (ENSHBUG00000003539)
Nile tilapia	MODERN SPECIES	1	ENSONIG00000008668	ENSONIG00000008664	TCERG1 (ENSONIG00000008655)	PCYOX1L (ENSONIG00000008650)	CREBRF (ENSONIG00000008647)	BNIP1 (ENSONIG00000008646)	STC2 (ENSONIG00000008645)	bod1 (ENSONIG00000042231)	htatsf1 (ENSONIG00000008638)	EBF1 (ENSONIG00000008631)	RNF145 (ENSONIG00000008627)	ublcp1 (ENSONIG00000008623)	IL12B (ENSONIG00000008618)	ubtd2 (ENSONIG00000008615)	ADRB2 (ENSONIG00000036346)	ablim3 (ENSONIG00000008605) ##22	afap1l1b (ENSONIG00000008601)	fgf13b (ENSONIG00000028040)	f9b (ENSONIG00000008591)	MCF2 (ENSONIG00000008583)	arr3a (ENSONIG00000008570)	ENSONIG00000031227	znrd2 (ENSONIG00000028216)	ENSONIG00000032804	ENSONIG00000028970	ENSONIG00000027324	dpp3 (ENSONIG00000008558)	ENSONIG00000041478	rbm14a (ENSONIG00000008557)	ENSONIG00000008548	ENSONIG00000008546
Midas cichlid	MODERN SPECIES	60	CLINT1 (ENSACIG00000020282)	ENSACIG00000020307	TCERG1 (ENSACIG00000020318)	PCYOX1L (ENSACIG00000020354)	CREBRF (ENSACIG00000020364)	BNIP1 (ENSACIG00000020392)	ENSACIG00000020412	ENSACIG00000020454	htatsf1 (ENSACIG00000020459)	EBF1 (ENSACIG00000020484)	RNF145 (ENSACIG00000020500)	ublcp1 (ENSACIG00000020518)	IL12B (ENSACIG00000020532)	ubtd2 (ENSACIG00000020544)	ADRB2 (ENSACIG00000020563)	ablim3 (ENSACIG00000020709) ##22	afap1l1b (ENSACIG00000020759)	fgf13b (ENSACIG00000020858)	f9b (ENSACIG00000020872)	MCF2 (ENSACIG00000020888)	arr3a (ENSACIG00000020924)	znrd2 (ENSACIG00000020951)	ENSACIG00000020997	ENSACIG00000021037	ENSACIG00000021111	dpp3 (ENSACIG00000021133)	ENSACIG00000021158	rbm14a (ENSACIG00000021173)	ENSACIG00000021202	ENSACIG00000021228	RAB39B (ENSACIG00000000154)
Pomacentridae	ANCESTRAL SPECIES	10	ENSGT00390000009902	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00390000009902	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00940000179094	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT01090000259997.a.d.b.b.b.b.b.c	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00940000181131	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000181697	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Clown anemonefish	MODERN SPECIES	739								ENSAOCG00000021673	EBF1 (ENSAOCG00000021715)	ENSAOCG00000021742	RNF145 (ENSAOCG00000021805)	ublcp1 (ENSAOCG00000021854)	IL12B (ENSAOCG00000021887)	ubtd2 (ENSAOCG00000021918)	ADRB2 (ENSAOCG00000021933)	ablim3 (ENSAOCG00000022137) ##22	afap1l1b (ENSAOCG00000022210)	fgf13b (ENSAOCG00000022246)	f9b (ENSAOCG00000022262)	MCF2 (ENSAOCG00000022360)	arr3a (ENSAOCG00000022413)	znrd2 (ENSAOCG00000022428)	FAM89B (ENSAOCG00000022438)	ENSAOCG00000001958	ENSAOCG00000022607
Orange clownfish	MODERN SPECIES	6	STC2 (ENSAPEG00000016395)	BNIP1 (ENSAPEG00000016372)	CREBRF (ENSAPEG00000016349)	ENSAPEG00000016336	PCYOX1L (ENSAPEG00000016324)	TCERG1 (ENSAPEG00000016260)	CLINT1 (ENSAPEG00000016192)	ENSAPEG00000016158	EBF1 (ENSAPEG00000016110)	ENSAPEG00000016088	RNF145 (ENSAPEG00000016047)	ublcp1 (ENSAPEG00000015991)	IL12B (ENSAPEG00000015946)	ubtd2 (ENSAPEG00000015929)	ADRB2 (ENSAPEG00000015923)	ablim3 (ENSAPEG00000015796) ##22	afap1l1b (ENSAPEG00000015760)	ENSAPEG00000015745	fgf13b (ENSAPEG00000015730)	ENSAPEG00000015722	btg3 (ENSAPEG00000015710)	cxadr (ENSAPEG00000015699)	AUTS2 (ENSAPEG00000015219)	ints2 (ENSAPEG00000015071)	med13a (ENSAPEG00000014866)	rnft1 (ENSAPEG00000014829)	ENSAPEG00000014775	ENSAPEG00000014767	VMP1 (ENSAPEG00000014734)	ptrh2 (ENSAPEG00000014719)	cltca (ENSAPEG00000014591)
Spiny chromis	MODERN SPECIES	688															ADRB2 (ENSAPOG00000000080)	ablim3 (ENSAPOG00000003868) ##22	afap1l1b (ENSAPOG00000003754)	fgf13b (ENSAPOG00000003725)	f9b (ENSAPOG00000003690)	MCF2 (ENSAPOG00000003675)	arr3a (ENSAPOG00000003658)	znrd2 (ENSAPOG00000003601)	FAM89B (ENSAPOG00000000798)	ENSAPOG00000003549	ENSAPOG00000003536	ENSAPOG00000003523	ENSAPOG00000003501	dpp3 (ENSAPOG00000003466)	ENSAPOG00000003394	rbm14a (ENSAPOG00000003380)	ENSAPOG00000003360
Bicolor damselfish	MODERN SPECIES	538		uap1l1 (ENSSPAG00000003523)	ENSSPAG00000003548	ENSSPAG00000003579	smarcb1b (ENSSPAG00000003595)	derl2 (ENSSPAG00000003626)	crata (ENSSPAG00000003694)	IQSEC2 (ENSSPAG00000004074)	ENSSPAG00000004120	ENSSPAG00000004154	USP11 (ENSSPAG00000004185)	rfc2 (ENSSPAG00000004272)	ENSSPAG00000004302	ENSSPAG00000004340	ENSSPAG00000004388	ablim3 (ENSSPAG00000004625) ##22	ENSSPAG00000004651
Pinecone sodierfish	MODERN SPECIES	5	htatsf1 (ENSMMDG00005016373)	bod1 (ENSMMDG00005016372)	STC2 (ENSMMDG00005016367)	BNIP1 (ENSMMDG00005016363)	CREBRF (ENSMMDG00005016358)	PCYOX1L (ENSMMDG00005016352)	TCERG1 (ENSMMDG00005015160)	ENSMMDG00005015150	CLINT1 (ENSMMDG00005015146)	EBF1 (ENSMMDG00005015002)	RNF145 (ENSMMDG00005014960)	ublcp1 (ENSMMDG00005014958)	ENSMMDG00005014953	ubtd2 (ENSMMDG00005014952)	ENSMMDG00005014873	ablim3 (ENSMMDG00005014796) ##22	afap1l1b (ENSMMDG00005014778)	fgf13b (ENSMMDG00005014772)	f9b (ENSMMDG00005014696)	MCF2 (ENSMMDG00005014684)	arr3a (ENSMMDG00005014566)	ENSMMDG00005014557	znrd2 (ENSMMDG00005014553)	FAM89B (ENSMMDG00005014550)	ENSMMDG00005014515	ENSMMDG00005014511	ENSMMDG00005014507	dpp3 (ENSMMDG00005013042)	ENSMMDG00005012990	ENSMMDG00005012987	ENSMMDG00005012984
Cod	MODERN SPECIES	20	ENSGMOG00000016444	bod1 (ENSGMOG00000016460)	STC2 (ENSGMOG00000024586)	ENSGMOG00000016467	CREBRF (ENSGMOG00000025090)	ENSGMOG00000016493	ENSGMOG00000016505	ENSGMOG00000036187	ENSGMOG00000023755	RNF145 (ENSGMOG00000011104)	ublcp1 (ENSGMOG00000011094)	ENSGMOG00000011082	ubtd2 (ENSGMOG00000023849)	ENSGMOG00000032640	ENSGMOG00000011065	ENSGMOG00000011042 ##22	ENSGMOG00000011023	fgf13b (ENSGMOG00000011012)	f9b (ENSGMOG00000022348)	MCF2 (ENSGMOG00000010978)	arr3a (ENSGMOG00000010969)	znrd2 (ENSGMOG00000033688)	ENSGMOG00000010941	ENSGMOG00000010874	ENSGMOG00000036016	ENSGMOG00000030070	ENSGMOG00000034818	ENSGMOG00000010840	ENSGMOG00000010816	ENSGMOG00000010808	slc7a3a (ENSGMOG00000010793)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.a ##22
Atlantic herring	MODERN SPECIES	22	NETO2 (ENSCHAG00000018955)	ENSCHAG00000018935	ENSCHAG00000018879	ENSCHAG00000018838	atp6v0e1 (ENSCHAG00000018820)	rpl26 (ENSCHAG00000018807)	tcerg1a (ENSCHAG00000018415)	ENSCHAG00000018347	ENSCHAG00000018331	ENSCHAG00000018310	thg1l (ENSCHAG00000018305)	LSM11 (ENSCHAG00000018297)	clint1a (ENSCHAG00000018163)	ADRB2 (ENSCHAG00000018103)	ENSCHAG00000018020	ENSCHAG00000017997 ##22	zgc:194246 (ENSCHAG00000017959)	ENSCHAG00000017717	WNT8A (ENSCHAG00000017544)	gria1a (ENSCHAG00000017335)	ENSCHAG00000017042	ENSCHAG00000016982	ENSCHAG00000016963
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES	69	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Acanthomorphata	ANCESTRAL SPECIES	1	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Tiger tail seahorse	MODERN SPECIES	332									thg1l (ENSHCOG00000002622)	LSM11 (ENSHCOG00000002629)	clint1a (ENSHCOG00000002647)	ebf3a (ENSHCOG00000002667)	il12ba (ENSHCOG00000002702)	adrb2a (ENSHCOG00000000575)	SH3TC2 (ENSHCOG00000002730)	ablim3 (ENSHCOG00000002753) ##22	afap1l1a (ENSHCOG00000002775)	ENSHCOG00000002788	foxi3b (ENSHCOG00000002793)	ENSHCOG00000002802	ENSHCOG00000002816	WNT8A (ENSHCOG00000002830)	ENSHCOG00000002837	gria1a (ENSHCOG00000002856)	ENSHCOG00000002891	ENSHCOG00000000601	itk (ENSHCOG00000002937)	cyfip2 (ENSHCOG00000002967)	hmmr (ENSHCOG00000002975)	ENSHCOG00000002990	ENSHCOG00000002998
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	17	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	20	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT01100000263971.a.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Haplochromini	ANCESTRAL SPECIES	14	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000179352	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT01100000263971.a.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b
Burton s mouthbrooder	MODERN SPECIES	284	STC2 (ENSHBUG00000004169)	nkx2.5 (ENSHBUG00000004161)	BNIP1 (ENSHBUG00000004144)	atp6v0e1 (ENSHBUG00000004116)	rpl26 (ENSHBUG00000004103)	ENSHBUG00000004086	GPR151 (ENSHBUG00000004045)	ENSHBUG00000004038	thg1l (ENSHBUG00000004025)	LSM11 (ENSHBUG00000004016)	clint1a (ENSHBUG00000003990)	EBF1 (ENSHBUG00000003918)	il12ba (ENSHBUG00000003827)	adrb2a (ENSHBUG00000003812)	SH3TC2 (ENSHBUG00000003801)	ablim3 (ENSHBUG00000003776) ##22	afap1l1a (ENSHBUG00000003720)	ENSHBUG00000003689	foxi3b (ENSHBUG00000003678)	ENSHBUG00000003671	ENSHBUG00000003661	ENSHBUG00000003647	WNT8A (ENSHBUG00000003609)	ENSHBUG00000003592	ENSHBUG00000003561	gria1a (ENSHBUG00000000832)	ENSHBUG00000003488	ENSHBUG00000003444	itk (ENSHBUG00000000073)	cyfip2 (ENSHBUG00000003396)	hmmr (ENSHBUG00000003301)
Haplochromini_A	ANCESTRAL SPECIES	13	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000179352	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT01100000263971.a.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b
P. nyererei	MODERN SPECIES	296	STC2 (ENSPNYG00000000177)	nkx2.5 (ENSPNYG00000000176)	BNIP1 (ENSPNYG00000000175)	atp6v0e1 (ENSPNYG00000000174)	rpl26 (ENSPNYG00000000173)	ENSPNYG00000000172	GPR151 (ENSPNYG00000000171)	ADAM19 (ENSPNYG00000000170)	thg1l (ENSPNYG00000000169)	LSM11 (ENSPNYG00000000168)	clint1a (ENSPNYG00000000167)	EBF1 (ENSPNYG00000000166)	il12ba (ENSPNYG00000000165)	adrb2a (ENSPNYG00000000164)	SH3TC2 (ENSPNYG00000000163)	ablim3 (ENSPNYG00000000162) ##22	afap1l1a (ENSPNYG00000000161)	ENSPNYG00000000160	foxi3b (ENSPNYG00000000159)	ENSPNYG00000000158	ENSPNYG00000000157	WNT8A (ENSPNYG00000000156)	WNT8A (ENSPNYG00000000155)	ENSPNYG00000000154	ENSPNYG00000000153	gria1a (ENSPNYG00000000152)	ENSPNYG00000000151	ENSPNYG00000000150	ENSPNYG00000000149	itk (ENSPNYG00000000148)	cyfip2 (ENSPNYG00000000147)
Haplochromini_B	ANCESTRAL SPECIES	7	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT01100000263971.a.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Eastern happy	MODERN SPECIES	11	STC2 (ENSACLG00000001808)	nkx2.5 (ENSACLG00000001803)	BNIP1 (ENSACLG00000001742)	atp6v0e1 (ENSACLG00000001656)	rpl26 (ENSACLG00000001623)	ENSACLG00000001580	GPR151 (ENSACLG00000001567)	ENSACLG00000001513	thg1l (ENSACLG00000001490)	LSM11 (ENSACLG00000001470)	clint1a (ENSACLG00000001440)	EBF1 (ENSACLG00000001374)	il12ba (ENSACLG00000001346)	adrb2a (ENSACLG00000001339)	SH3TC2 (ENSACLG00000001215)	ablim3 (ENSACLG00000001009) ##22	afap1l1a (ENSACLG00000000985)	ENSACLG00000000979	ENSACLG00000000973	foxi3b (ENSACLG00000000960)	ENSACLG00000000952	ENSACLG00000000927	WNT8A (ENSACLG00000000875)	ENSACLG00000000862	gria1a (ENSACLG00000000782)	ENSACLG00000000756	ENSACLG00000000718	ENSACLG00000000711	itk (ENSACLG00000000656)	cyfip2 (ENSACLG00000000548)	ENSACLG00000000536
Zebra mbuna	MODERN SPECIES	1102	nkx2.5 (ENSMZEG00005008933)	BNIP1 (ENSMZEG00005008908)	atp6v0e1 (ENSMZEG00005008895)	rpl26 (ENSMZEG00005008869)	ENSMZEG00005008829	GPR151 (ENSMZEG00005008821)	ENSMZEG00005008796	thg1l (ENSMZEG00005008770)	LSM11 (ENSMZEG00005008755)	clint1a (ENSMZEG00005008620)	EBF1 (ENSMZEG00005008525)	il12ba (ENSMZEG00005008489)	ENSMZEG00005008456	adrb2a (ENSMZEG00005008409)	SH3TC2 (ENSMZEG00005008353)	ablim3 (ENSMZEG00005008291) ##22	afap1l1a (ENSMZEG00005008238)	ENSMZEG00005008218	foxi3b (ENSMZEG00005008209)	ENSMZEG00005008197	ENSMZEG00005008185	WNT8A (ENSMZEG00005008172)	ENSMZEG00005008157	ENSMZEG00005008139	gria1a (ENSMZEG00005008118)	ENSMZEG00005008104	ENSMZEG00005008089	ENSMZEG00005008079	itk (ENSMZEG00005008029)	cyfip2 (ENSMZEG00005007960)	ENSMZEG00005007942
Lyretail cichlid	MODERN SPECIES	292	STC2 (ENSNBRG00000016511)	nkx2.5 (ENSNBRG00000016525)	BNIP1 (ENSNBRG00000016563)	atp6v0e1 (ENSNBRG00000016585)	rpl26 (ENSNBRG00000016596)	ENSNBRG00000016625	GPR151 (ENSNBRG00000016675)	ADAM19 (ENSNBRG00000016976)	thg1l (ENSNBRG00000017747)	LSM11 (ENSNBRG00000017775)	clint1a (ENSNBRG00000017805)	EBF1 (ENSNBRG00000017864)	il12ba (ENSNBRG00000017908)	adrb2a (ENSNBRG00000017928)	SH3TC2 (ENSNBRG00000017949)	ablim3 (ENSNBRG00000018020) ##22	afap1l1a (ENSNBRG00000018184)	ENSNBRG00000018226	foxi3b (ENSNBRG00000018251)	ENSNBRG00000018261	ENSNBRG00000018267	WNT8A (ENSNBRG00000018339)	ENSNBRG00000018577	gria1a (ENSNBRG00000018592)	ENSNBRG00000018627	ENSNBRG00000018645	ENSNBRG00000018680	itk (ENSNBRG00000018729)	cyfip2 (ENSNBRG00000018830)	hmmr (ENSNBRG00000018896)	insb (ENSNBRG00000018974)
Nile tilapia	MODERN SPECIES	11	stc2 (ENSONIG00000029953)	nkx2.5 (ENSONIG00000017679)	BNIP1 (ENSONIG00000017678)	atp6v0e1 (ENSONIG00000028024)	rpl26 (ENSONIG00000017676)	ENSONIG00000017671	GPR151 (ENSONIG00000029838)	ENSONIG00000017665	thg1l (ENSONIG00000017663)	LSM11 (ENSONIG00000017657)	clint1a (ENSONIG00000017658)	EBF1 (ENSONIG00000017655)	il12ba (ENSONIG00000017652)	adrb2a (ENSONIG00000020577)	SH3TC2 (ENSONIG00000017645)	ablim3 (ENSONIG00000017632) ##22	afap1l1a (ENSONIG00000017624)	ENSONIG00000029286	foxi3b (ENSONIG00000017618)	ENSONIG00000029990	ENSONIG00000017617	ENSONIG00000027224	ENSONIG00000017615	ENSONIG00000037471	gria1a (ENSONIG00000017606)	ENSONIG00000017600	ENSONIG00000020576	itk (ENSONIG00000017591)	cyfip2 (ENSONIG00000017589)	hmmr (ENSONIG00000017587)	ENSONIG00000017585
Midas cichlid	MODERN SPECIES	189	STC2 (ENSACIG00000016800)	nkx2.5 (ENSACIG00000016790)	BNIP1 (ENSACIG00000016771)	atp6v0e1 (ENSACIG00000016760)	rpl26 (ENSACIG00000016752)	ENSACIG00000016718	GPR151 (ENSACIG00000016712)	ADAM19 (ENSACIG00000016009)	thg1l (ENSACIG00000015946)	LSM11 (ENSACIG00000015937)	clint1a (ENSACIG00000015914)	EBF1 (ENSACIG00000015886)	il12ba (ENSACIG00000015872)	adrb2a (ENSACIG00000015862)	SH3TC2 (ENSACIG00000015791)	ablim3 (ENSACIG00000015752) ##22	afap1l1a (ENSACIG00000015699)	ENSACIG00000015669	foxi3b (ENSACIG00000015632)	ENSACIG00000015615	ENSACIG00000015599	WNT8A (ENSACIG00000015581)	ENSACIG00000015570	gria1a (ENSACIG00000015526)	ENSACIG00000015494	med7 (ENSACIG00000015483)	itk (ENSACIG00000015444)	cyfip2 (ENSACIG00000015377)	hmmr (ENSACIG00000015342)	insb (ENSACIG00000015184)	ENSACIG00000015160
Pomacentridae	DUPLICATION
Pomacentridae	ANCESTRAL SPECIES	4	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b.a ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Pomacentridae_A	ANCESTRAL SPECIES	17	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b.a ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Amphiprion	ANCESTRAL SPECIES	26	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b.a ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.a	ENSGT00940000157840.b	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Clown anemonefish	MODERN SPECIES	3322	STC2 (ENSAOCG00000015774)	BNIP1 (ENSAOCG00000001092)	nkx2.5 (ENSAOCG00000001088)	atp6v0e1 (ENSAOCG00000015692)	rpl26 (ENSAOCG00000015670)	ENSAOCG00000015657	GPR151 (ENSAOCG00000015625)	ENSAOCG00000015615	thg1l (ENSAOCG00000015583)	LSM11 (ENSAOCG00000015560)	clint1a (ENSAOCG00000015555)	EBF1 (ENSAOCG00000015500)	il12ba (ENSAOCG00000015400)	adrb2a (ENSAOCG00000015368)	SH3TC2 (ENSAOCG00000015347)	ablim3 (ENSAOCG00000015274) ##22	afap1l1a (ENSAOCG00000015204)	ENSAOCG00000002171	foxi3b (ENSAOCG00000015146)	ENSAOCG00000015137	WNT8A (ENSAOCG00000015126)	WNT8A (ENSAOCG00000015098)	ENSAOCG00000001848	gria1a (ENSAOCG00000014969)	ENSAOCG00000014930	ENSAOCG00000001026	itk (ENSAOCG00000014893)	cyfip2 (ENSAOCG00000014820)	hmmr (ENSAOCG00000014725)	ENSAOCG00000014680
Orange clownfish	MODERN SPECIES	4	STC2 (ENSAPEG00000011880)	nkx2.5 (ENSAPEG00000011853)	BNIP1 (ENSAPEG00000011824)	atp6v0e1 (ENSAPEG00000011795)	rpl26 (ENSAPEG00000011777)	ENSAPEG00000011721	GPR151 (ENSAPEG00000011707)	ENSAPEG00000011683	thg1l (ENSAPEG00000011671)	LSM11 (ENSAPEG00000011659)	clint1a (ENSAPEG00000011645)	EBF1 (ENSAPEG00000011584)	il12ba (ENSAPEG00000011572)	adrb2a (ENSAPEG00000011560)	SH3TC2 (ENSAPEG00000011464)	ablim3 (ENSAPEG00000011381) ##22	afap1l1a (ENSAPEG00000011329)	ENSAPEG00000011292	foxi3b (ENSAPEG00000011273)	ENSAPEG00000011258	WNT8A (ENSAPEG00000011151)	WNT8A (ENSAPEG00000011102)	ENSAPEG00000011095	gria1a (ENSAPEG00000011016)	ENSAPEG00000010961	ENSAPEG00000010943	itk (ENSAPEG00000010858)	cyfip2 (ENSAPEG00000010752)	hmmr (ENSAPEG00000010676)	insb (ENSAPEG00000010670)	ENSAPEG00000010656
Spiny chromis	MODERN SPECIES	401															SH3TC2 (ENSAPOG00000023926)	ablim3 (ENSAPOG00000023739) ##22	afap1l1a (ENSAPOG00000023493)	ENSAPOG00000023295	foxi3b (ENSAPOG00000023271)	ENSAPOG00000023254	WNT8A (ENSAPOG00000023241)	WNT8A (ENSAPOG00000023204)	ENSAPOG00000000664	gria1a (ENSAPOG00000023180)	ENSAPOG00000000661
Bicolor damselfish	MODERN SPECIES	400	STC2 (ENSSPAG00000008573)	nkx2.5 (ENSSPAG00000008586)	BNIP1 (ENSSPAG00000008611)	atp6v0e1 (ENSSPAG00000008628)	rpl26 (ENSSPAG00000008645)	ENSSPAG00000008661	GPR151 (ENSSPAG00000008694)	ENSSPAG00000008702	thg1l (ENSSPAG00000008744)	LSM11 (ENSSPAG00000008768)	clint1a (ENSSPAG00000008774)	EBF1 (ENSSPAG00000008807)	il12ba (ENSSPAG00000008911)	adrb2a (ENSSPAG00000008929)	SH3TC2 (ENSSPAG00000008941)	ablim3 (ENSSPAG00000008984) ##22	ENSSPAG00000009018 ##22	afap1l1a (ENSSPAG00000009032)	ENSSPAG00000009064	foxi3b (ENSSPAG00000009081)	ENSSPAG00000009088	ENSSPAG00000009101	WNT8A (ENSSPAG00000009125)	WNT8A (ENSSPAG00000009138)	ENSSPAG00000009173
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.b ##22
Bicolor damselfish	MODERN SPECIES	400	nkx2.5 (ENSSPAG00000008586)	BNIP1 (ENSSPAG00000008611)	atp6v0e1 (ENSSPAG00000008628)	rpl26 (ENSSPAG00000008645)	ENSSPAG00000008661	GPR151 (ENSSPAG00000008694)	ENSSPAG00000008702	thg1l (ENSSPAG00000008744)	LSM11 (ENSSPAG00000008768)	clint1a (ENSSPAG00000008774)	EBF1 (ENSSPAG00000008807)	il12ba (ENSSPAG00000008911)	adrb2a (ENSSPAG00000008929)	SH3TC2 (ENSSPAG00000008941)	ablim3 (ENSSPAG00000008984) ##22	ENSSPAG00000009018 ##22	afap1l1a (ENSSPAG00000009032)	ENSSPAG00000009064	foxi3b (ENSSPAG00000009081)	ENSSPAG00000009088	ENSSPAG00000009101	WNT8A (ENSSPAG00000009125)	WNT8A (ENSSPAG00000009138)	ENSSPAG00000009173
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Oryzias	ANCESTRAL SPECIES	17	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Oryzias_b	ANCESTRAL SPECIES	20	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00990000205642	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Javanese ricefish	MODERN SPECIES	1	nkx2.5 (ENSOJAG00000010200)	BNIP1 (ENSOJAG00000010159)	atp6v0e1 (ENSOJAG00000010132)	rpl26 (ENSOJAG00000010114)	ENSOJAG00000009776	GPR151 (ENSOJAG00000009747)	ENSOJAG00000008293	thg1l (ENSOJAG00000008145)	LSM11 (ENSOJAG00000008134)	clint1a (ENSOJAG00000008106)	ENSOJAG00000008070	EBF1 (ENSOJAG00000007315)	il12ba (ENSOJAG00000007054)	adrb2a (ENSOJAG00000007009)	SH3TC2 (ENSOJAG00000006962)	ablim3 (ENSOJAG00000006796) ##22	afap1l1a (ENSOJAG00000006732)	ENSOJAG00000006709	foxi3b (ENSOJAG00000006691)	ENSOJAG00000006678	WNT8A (ENSOJAG00000006416)	ENSOJAG00000006364	gria1a (ENSOJAG00000005934)	ENSOJAG00000022715	med7 (ENSOJAG00000022709)	itk (ENSOJAG00000022693)	cyfip2 (ENSOJAG00000022671)	hmmr (ENSOJAG00000022658)	ENSOJAG00000022646	TENM2 (ENSOJAG00000021800)	zgc:165573 (ENSOJAG00000021663)
Indian medaka	MODERN SPECIES	16	nkx2.5 (ENSOMEG00000011234)	BNIP1 (ENSOMEG00000011257)	atp6v0e1 (ENSOMEG00000011268)	rpl26 (ENSOMEG00000011284)	ENSOMEG00000011370	GPR151 (ENSOMEG00000011385)	ENSOMEG00000011448	thg1l (ENSOMEG00000011477)	LSM11 (ENSOMEG00000011492)	clint1a (ENSOMEG00000011516)	ENSOMEG00000011527	EBF1 (ENSOMEG00000011625)	il12ba (ENSOMEG00000011666)	adrb2a (ENSOMEG00000011673)	SH3TC2 (ENSOMEG00000011756)	ablim3 (ENSOMEG00000011979) ##22	afap1l1a (ENSOMEG00000012122)	ENSOMEG00000012177	foxi3b (ENSOMEG00000012195)	ENSOMEG00000012202	WNT8A (ENSOMEG00000012222)	WNT8A (ENSOMEG00000012256)	ENSOMEG00000012270	gria1a (ENSOMEG00000012345)	ENSOMEG00000012395	ENSOMEG00000012405	itk (ENSOMEG00000012431)	cyfip2 (ENSOMEG00000000713)	hmmr (ENSOMEG00000012679)	ENSOMEG00000012707	TENM2 (ENSOMEG00000013180)
Oryzias_a	ANCESTRAL SPECIES	22	ENSGT00940000182228	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Japanese Medaka HdrR	MODERN SPECIES	1	ENSORLG00000022613	nkx2.5 (ENSORLG00000007346)	BNIP1 (ENSORLG00000007358)	atp6v0e1 (ENSORLG00000007362)	rpl26 (ENSORLG00000007374)	ENSORLG00000007398	GPR151 (ENSORLG00000007403)	ENSORLG00000007413	thg1l (ENSORLG00000007424)	LSM11 (ENSORLG00000007434)	clint1a (ENSORLG00000007455)	EBF1 (ENSORLG00000007471)	il12ba (ENSORLG00000007477)	adrb2a (ENSORLG00000007484)	SH3TC2 (ENSORLG00000007524)	ablim3 (ENSORLG00000007590) ##22	afap1l1a (ENSORLG00000007636)	ENSORLG00000007644	foxi3b (ENSORLG00000028275)	ENSORLG00000025412	WNT8A (ENSORLG00000007648)	WNT8A (ENSORLG00000007667)	ENSORLG00000007678	gria1a (ENSORLG00000007719)	ENSORLG00000024316	ENSORLG00000007735	ENSORLG00000007738	itk (ENSORLG00000007773)	cyfip2 (ENSORLG00000007842)	hmmr (ENSORLG00000007875)	ENSORLG00000025157
Chinese medaka	MODERN SPECIES	25	nkx2.5 (ENSOSIG00000021419)	BNIP1 (ENSOSIG00000021421)	atp6v0e1 (ENSOSIG00000021424)	rpl26 (ENSOSIG00000021426)	ENSOSIG00000021439	GPR151 (ENSOSIG00000021853)	ENSOSIG00000021855	ADAM19 (ENSOSIG00000021886)	thg1l (ENSOSIG00000021893)	LSM11 (ENSOSIG00000021896)	clint1a (ENSOSIG00000021908)	EBF1 (ENSOSIG00000022001)	il12ba (ENSOSIG00000022253)	adrb2a (ENSOSIG00000022258)	SH3TC2 (ENSOSIG00000022265)	ablim3 (ENSOSIG00000022277) ##22	afap1l1a (ENSOSIG00000022298)	ENSOSIG00000022301	foxi3b (ENSOSIG00000000022)	ENSOSIG00000000028	WNT8A (ENSOSIG00000000031)	ENSOSIG00000000034	ENSOSIG00000000038	gria1a (ENSOSIG00000000157)	ENSOSIG00000000358	ENSOSIG00000000362	itk (ENSOSIG00000000378)	cyfip2 (ENSOSIG00000000442)	hmmr (ENSOSIG00000000476)	ENSOSIG00000000479	TENM2 (ENSOSIG00000000504)
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Aplocheiloidei	ANCESTRAL SPECIES	98	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B.f	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	633																ENSNFUG00015016689 ##22
Turquoise killifish	MODERN SPECIES	1627	ENSNFUG00015016511	IDNK (ENSNFUG00015016517)	FRMD3 (ENSNFUG00015016538)	ENSNFUG00015016661	RASEF (ENSNFUG00015016668)	ENSNFUG00015016714	SMAD4 (ENSNFUG00015017545)	MEX3C (ENSNFUG00015017604)	TMED7 (ENSNFUG00015017609)	FEM1C (ENSNFUG00015017616)	PGGT1B (ENSNFUG00015017630)	ENSNFUG00015017667	TRIM36 (ENSNFUG00015017700)	ENSNFUG00015017811	ENSNFUG00015017816	ablim3 (ENSNFUG00015017828) ##22	CCSER1 (ENSNFUG00015017848)	CU138508.1 (ENSNFUG00015017857)	ENSNFUG00015017866	ENSNFUG00015017872	ENSNFUG00015017877	grid2 (ENSNFUG00015017899)	SMARCAD1 (ENSNFUG00015018326)	atoh1a (ENSNFUG00015018429)	MPEG1 (ENSNFUG00015018433)	ENSNFUG00015018443	prf1.5 (ENSNFUG00015018447)	MPEG1 (ENSNFUG00015018482)	tspan36 (ENSNFUG00015018485)	ENSNFUG00015018491	MAPK4 (ENSNFUG00015018492)
Mangrove rivulus	MODERN SPECIES	188	STC2 (ENSKMAG00000008973)	nkx2.5 (ENSKMAG00000009000)	BNIP1 (ENSKMAG00000009017)	atp6v0e1 (ENSKMAG00000009053)	rpl26 (ENSKMAG00000009061)	ENSKMAG00000009079	GPR151 (ENSKMAG00000009118)	ADAM19 (ENSKMAG00000009132)	thg1l (ENSKMAG00000009156)	LSM11 (ENSKMAG00000009181)	clint1a (ENSKMAG00000009195)	EBF1 (ENSKMAG00000009270)	il12ba (ENSKMAG00000009319)	adrb2a (ENSKMAG00000009371)	SH3TC2 (ENSKMAG00000009379)	ablim3 (ENSKMAG00000009437) ##22	afap1l1a (ENSKMAG00000009542)	ENSKMAG00000009626	ENSKMAG00000009662	foxi3b (ENSKMAG00000009703)	ENSKMAG00000009718	ENSKMAG00000009743	WNT8A (ENSKMAG00000009767)	WNT8A (ENSKMAG00000009796)	ENSKMAG00000009857
Cyprinodontoidei	ANCESTRAL SPECIES	19	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Poecilia	ANCESTRAL SPECIES	21	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.d
NAME_6	DUPLICATION
NAME_6	ANCESTRAL SPECIES	405																ENSGT00950000182850.a.b.a.b.a.b.e ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a
Amazon molly	MODERN SPECIES	1052																ablim3 (ENSPFOG00000004508) ##22	afap1l1a (ENSPFOG00000005052)	ENSPFOG00000005236
Sailfin molly	MODERN SPECIES	2194																ablim3 (ENSPLAG00000008646) ##22	afap1l1a (ENSPLAG00000008609)	ENSPLAG00000008593	foxi3b (ENSPLAG00000008563)	ENSPLAG00000000711	WNT8A (ENSPLAG00000008524)	ENSPLAG00000008510	ENSPLAG00000008483
NAME_6	ANCESTRAL SPECIES	17	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b.f	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b.f ##22
Amazon molly	MODERN SPECIES	622					GPR151 (ENSPFOG00000000955)	GPR151 (ENSPFOG00000020976)	ENSPFOG00000000776	thg1l (ENSPFOG00000000643)	thg1l (ENSPFOG00000000528)	LSM11 (ENSPFOG00000000512)	clint1a (ENSPFOG00000000551)	EBF1 (ENSPFOG00000000294)	il12ba (ENSPFOG00000000264)	adrb2a (ENSPFOG00000020975)	SH3TC2 (ENSPFOG00000000208)	ENSPFOG00000022035 ##22	ENSPFOG00000000198	ENSPFOG00000023621	gria1a (ENSPFOG00000000190)
Sailfin molly	MODERN SPECIES	728								thg1l (ENSPLAG00000019419)	LSM11 (ENSPLAG00000019434)	clint1a (ENSPLAG00000019440)	EBF1 (ENSPLAG00000019486)	il12ba (ENSPLAG00000019510)	ENSPLAG00000019522	adrb2a (ENSPLAG00000019528)	SH3TC2 (ENSPLAG00000019580)	ENSPLAG00000019591 ##22
Guppy	MODERN SPECIES	440	STC2 (ENSPREG00000019524)	nkx2.5 (ENSPREG00000019530)	BNIP1 (ENSPREG00000019539)	atp6v0e1 (ENSPREG00000019563)	rpl26 (ENSPREG00000019574)	ENSPREG00000019594	ENSPREG00000019638	ENSPREG00000019651	thg1l (ENSPREG00000019678)	LSM11 (ENSPREG00000019696)	clint1a (ENSPREG00000019704)	EBF1 (ENSPREG00000019762)	il12ba (ENSPREG00000019792)	adrb2a (ENSPREG00000019818)	SH3TC2 (ENSPREG00000019866)	ablim3 (ENSPREG00000020058) ##22	afap1l1a (ENSPREG00000020266)	ENSPREG00000020347	foxi3b (ENSPREG00000020357)	ENSPREG00000020363	ENSPREG00000020370	WNT8A (ENSPREG00000020385)	gria1a (ENSPREG00000020418)	ENSPREG00000020435	ENSPREG00000020443	itk (ENSPREG00000020456)	cyfip2 (ENSPREG00000020521)	hmmr (ENSPREG00000020688)	ENSPREG00000020737	ENSPREG00000020855	TENM2 (ENSPREG00000020872)
Platyfish	MODERN SPECIES	15	cpeb4a (ENSXMAG00000010247)	STC2 (ENSXMAG00000010263)	nkx2.5 (ENSXMAG00000010266)	BNIP1 (ENSXMAG00000023412)	atp6v0e1 (ENSXMAG00000021044)	rpl26 (ENSXMAG00000010281)	ENSXMAG00000029074	ENSXMAG00000010315	thg1l (ENSXMAG00000008240)	LSM11 (ENSXMAG00000008238)	clint1a (ENSXMAG00000008223)	EBF1 (ENSXMAG00000010351)	il12ba (ENSXMAG00000010355)	adrb2a (ENSXMAG00000019510)	SH3TC2 (ENSXMAG00000010375)	ablim3 (ENSXMAG00000010396) ##22	afap1l1a (ENSXMAG00000010435)	ENSXMAG00000010450	ENSXMAG00000027368	foxi3b (ENSXMAG00000010462)	ENSXMAG00000023574	WNT8A (ENSXMAG00000010465)	WNT8A (ENSXMAG00000010466)	ENSXMAG00000010476	ENSXMAG00000029503	ENSXMAG00000026788	gria1a (ENSXMAG00000010477)	ENSXMAG00000010505	med7 (ENSXMAG00000019511)	itk (ENSXMAG00000013011)	cyfip2 (ENSXMAG00000004446)
NAME_4	ANCESTRAL SPECIES	20	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000177067	ENSGT01030000234566.e.b.a.b.c.a
Mummichog	MODERN SPECIES	454												ENSFHEG00000010676	il12ba (ENSFHEG00000010683)	adrb2a (ENSFHEG00000010689)	SH3TC2 (ENSFHEG00000010719)	ablim3 (ENSFHEG00000010827) ##22	afap1l1a (ENSFHEG00000010911)	ENSFHEG00000011019	foxi3b (ENSFHEG00000011033)	ENSFHEG00000011046	WNT8A (ENSFHEG00000011066)	WNT8A (ENSFHEG00000011077)
Sheepshead minnow	MODERN SPECIES	260												il12ba (ENSCVAG00000018444)	adrb2a (ENSCVAG00000018454)	ENSCVAG00000018465	SH3TC2 (ENSCVAG00000018528)	ablim3 (ENSCVAG00000018706) ##22	afap1l1a (ENSCVAG00000018759)	ENSCVAG00000018795	foxi3b (ENSCVAG00000018805)	ENSCVAG00000018848	WNT8A (ENSCVAG00000018988)	ENSCVAG00000019000	ENSCVAG00000019005	gria1a (ENSCVAG00000019046)	ENSCVAG00000019124	ENSCVAG00000019197	ENSCVAG00000019211	cyfip2 (ENSCVAG00000019360)	hmmr (ENSCVAG00000019373)	ENSCVAG00000019393
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000012202	NKX2-5 (ENSMAMG00000012211)	BNIP1 (ENSMAMG00000012221)	atp6v0e1 (ENSMAMG00000012234)	rpl26 (ENSMAMG00000012244)	ENSMAMG00000012253	ENSMAMG00000012275	ENSMAMG00000012283	ENSMAMG00000012302	LSM11 (ENSMAMG00000012318)	clint1a (ENSMAMG00000012330)	EBF1 (ENSMAMG00000012394)	il12ba (ENSMAMG00000012459)	adrb2a (ENSMAMG00000012468)	SH3TC2 (ENSMAMG00000012479)	ablim3 (ENSMAMG00000012572) ##22	afap1l1a (ENSMAMG00000012645)	ENSMAMG00000012661	foxi3b (ENSMAMG00000012681)	ENSMAMG00000012699	ENSMAMG00000012707	ENSMAMG00000012767	gria1a (ENSMAMG00000012778)	ENSMAMG00000012811	ENSMAMG00000012827	itk (ENSMAMG00000012832)	cyfip2 (ENSMAMG00000012858)	hmmr (ENSMAMG00000012972)	ENSMAMG00000013012	ENSMAMG00000013437	ENSMAMG00000013522
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000177067
Siamese fighting fish	MODERN SPECIES	1	STC2 (ENSBSLG00000024394)	nkx2.5 (ENSBSLG00000024391)	BNIP1 (ENSBSLG00000024390)	atp6v0e1 (ENSBSLG00000024387)	rpl26 (ENSBSLG00000024385)	PPP2R2B (ENSBSLG00000024353)	GPR151 (ENSBSLG00000024352)	ENSBSLG00000024320	thg1l (ENSBSLG00000024304)	LSM11 (ENSBSLG00000024301)	clint1a (ENSBSLG00000024298)	EBF1 (ENSBSLG00000024182)	il12ba (ENSBSLG00000024142)	adrb2a (ENSBSLG00000024137)	SH3TC2 (ENSBSLG00000024125)	ablim3 (ENSBSLG00000023320) ##22	afap1l1a (ENSBSLG00000023244)	ENSBSLG00000023233	foxi3b (ENSBSLG00000023228)	ENSBSLG00000023224	ENSBSLG00000023175	WNT8A (ENSBSLG00000023159)	ENSBSLG00000023157	gria1a (ENSBSLG00000022444)	ENSBSLG00000022149	ENSBSLG00000022144	itk (ENSBSLG00000022102)	cyfip2 (ENSBSLG00000021947)	hmmr (ENSBSLG00000021863)	ENSBSLG00000021805	TENM2 (ENSBSLG00000020848)
Climbing perch	MODERN SPECIES	1	ENSATEG00000001757	NKX2-5 (ENSATEG00000001752)	BNIP1 (ENSATEG00000001656)	atp6v0e1 (ENSATEG00000026190)	rpl26 (ENSATEG00000001516)	ENSATEG00000001492	ENSATEG00000001487	ENSATEG00000001474	ENSATEG00000001426	LSM11 (ENSATEG00000001413)	clint1a (ENSATEG00000001365)	EBF1 (ENSATEG00000001287)	il12ba (ENSATEG00000001253)	adrb2a (ENSATEG00000001246)	SH3TC2 (ENSATEG00000001211)	ablim3 (ENSATEG00000001150) ##22	afap1l1a (ENSATEG00000001108)	ENSATEG00000001099	foxi3b (ENSATEG00000026556)	ENSATEG00000001060	ENSATEG00000025662	ENSATEG00000000946	ENSATEG00000000969	ENSATEG00000000936	gria1a (ENSATEG00000000871)	ENSATEG00000000803	ENSATEG00000000784	itk (ENSATEG00000000704)	cyfip2 (ENSATEG00000000572)	ENSATEG00000000564	ENSATEG00000000372
Carangaria	ANCESTRAL SPECIES	15	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Pleuronectoidei	ANCESTRAL SPECIES	18	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Turbot	MODERN SPECIES	4	ENSSMAG00000008853	nkx2.5 (ENSSMAG00000034948)	BNIP1 (ENSSMAG00000008871)	atp6v0e1 (ENSSMAG00000023882)	rpl26 (ENSSMAG00000008898)	ENSSMAG00000008920	ENSSMAG00000008960	ENSSMAG00000008967	ENSSMAG00000008988	LSM11 (ENSSMAG00000008998)	clint1a (ENSSMAG00000009019)	EBF1 (ENSSMAG00000009083)	il12ba (ENSSMAG00000009129)	adrb2a (ENSSMAG00000009143)	SH3TC2 (ENSSMAG00000009150)	ablim3 (ENSSMAG00000009267) ##22	afap1l1a (ENSSMAG00000009343)	ENSSMAG00000009475	foxi3b (ENSSMAG00000009513)	ENSSMAG00000009518	ENSSMAG00000009532	ENSSMAG00000009563	ENSSMAG00000009574	gria1a (ENSSMAG00000009591)	ENSSMAG00000009636	ENSSMAG00000009664	itk (ENSSMAG00000009682)	cyfip2 (ENSSMAG00000009790)	hmmr (ENSSMAG00000009898)	ENSSMAG00000025284	ENSSMAG00000010000
Tongue sole	MODERN SPECIES	6	BNIP1 (ENSCSEG00000019916)	atp6v0e1 (ENSCSEG00000019925)	rpl26 (ENSCSEG00000019926)	ENSCSEG00000019928	ADAM19 (ENSCSEG00000019932)	ENSCSEG00000019942	ENSCSEG00000019944	thg1l (ENSCSEG00000019947)	LSM11 (ENSCSEG00000019951)	clint1a (ENSCSEG00000019955)	EBF1 (ENSCSEG00000019968)	il12ba (ENSCSEG00000019971)	ENSCSEG00000019988	adrb2a (ENSCSEG00000019998)	SH3TC2 (ENSCSEG00000020000)	ablim3 (ENSCSEG00000020013) ##22	afap1l1a (ENSCSEG00000020028)	ENSCSEG00000020044	foxi3b (ENSCSEG00000020048)	ENSCSEG00000020052	ENSCSEG00000020054	WNT8A (ENSCSEG00000020067)	ENSCSEG00000020084	gria1a (ENSCSEG00000020093)	ENSCSEG00000020111	itk (ENSCSEG00000020127)	cyfip2 (ENSCSEG00000020134)	hmmr (ENSCSEG00000020147)	nkx2.5 (ENSCSEG00000020152)	STC2 (ENSCSEG00000020153)	cpeb4a (ENSCSEG00000020154)
Carangaria_A	ANCESTRAL SPECIES	22	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Seriola	ANCESTRAL SPECIES	22	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT00940000177067
Greater amberjack	MODERN SPECIES	67	STC2 (ENSSDUG00000009667)	nkx2.5 (ENSSDUG00000009686)	BNIP1 (ENSSDUG00000009715)	atp6v0e1 (ENSSDUG00000009742)	rpl26 (ENSSDUG00000009759)	ENSSDUG00000009786	GPR151 (ENSSDUG00000009811)	ADAM19 (ENSSDUG00000009819)	thg1l (ENSSDUG00000009841)	LSM11 (ENSSDUG00000009878)	clint1a (ENSSDUG00000009895)	EBF1 (ENSSDUG00000009954)	il12ba (ENSSDUG00000010051)	adrb2a (ENSSDUG00000010174)	SH3TC2 (ENSSDUG00000010200)	ablim3 (ENSSDUG00000010236) ##22	afap1l1a (ENSSDUG00000010313)	ENSSDUG00000010352	foxi3b (ENSSDUG00000010362)	ENSSDUG00000010376	WNT8A (ENSSDUG00000010385)	WNT8A (ENSSDUG00000010424)	ENSSDUG00000010445	gria1a (ENSSDUG00000010457)	ENSSDUG00000010533	ENSSDUG00000010588	itk (ENSSDUG00000010601)	cyfip2 (ENSSDUG00000010693)	hmmr (ENSSDUG00000010814)	ENSSDUG00000010837	TENM2 (ENSSDUG00000010858)
Yellowtail amberjack	MODERN SPECIES	2988	STC2 (ENSSLDG00000003626)	nkx2.5 (ENSSLDG00000003605)	BNIP1 (ENSSLDG00000003548)	atp6v0e1 (ENSSLDG00000003531)	rpl26 (ENSSLDG00000003512)	ENSSLDG00000003475	GPR151 (ENSSLDG00000003464)	ENSSLDG00000003450	thg1l (ENSSLDG00000003416)	LSM11 (ENSSLDG00000003399)	clint1a (ENSSLDG00000003286)	EBF1 (ENSSLDG00000003179)	il12ba (ENSSLDG00000003125)	adrb2a (ENSSLDG00000003082)	SH3TC2 (ENSSLDG00000002927)	ablim3 (ENSSLDG00000002750) ##22	afap1l1a (ENSSLDG00000002678)	ENSSLDG00000002654	foxi3b (ENSSLDG00000002640)	ENSSLDG00000002612	WNT8A (ENSSLDG00000002575)	WNT8A (ENSSLDG00000002476)	ENSSLDG00000002443	gria1a (ENSSLDG00000002377)	ENSSLDG00000002325	ENSSLDG00000002310	itk (ENSSLDG00000002242)	cyfip2 (ENSSLDG00000002141)	hmmr (ENSSLDG00000002118)	insb (ENSSLDG00000002108)
Barramundi perch	MODERN SPECIES	63	STC2 (ENSLCAG00010007434)	nkx2.5 (ENSLCAG00010007425)	BNIP1 (ENSLCAG00010007416)	atp6v0e1 (ENSLCAG00010007410)	rpl26 (ENSLCAG00010007402)	ENSLCAG00010007273	GPR151 (ENSLCAG00010007185)	ADAM19 (ENSLCAG00010007141)	thg1l (ENSLCAG00010007125)	LSM11 (ENSLCAG00010007119)	clint1a (ENSLCAG00010007115)	il12ba (ENSLCAG00010007108)	EBF1 (ENSLCAG00010006361)	adrb2a (ENSLCAG00010006103)	SH3TC2 (ENSLCAG00010006084)	ablim3 (ENSLCAG00010006048) ##22	afap1l1a (ENSLCAG00010006031)	ENSLCAG00010006021	foxi3b (ENSLCAG00010006012)	ENSLCAG00010006007	ENSLCAG00010006004	WNT8A (ENSLCAG00010005995)	ENSLCAG00010005991	gria1a (ENSLCAG00010005799)	ENSLCAG00010005751	itk (ENSLCAG00010005734)	cyfip2 (ENSLCAG00010005713)	hmmr (ENSLCAG00010005689)	insb (ENSLCAG00010005683)	TENM2 (ENSLCAG00010005032)	ENSLCAG00010004790
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Tetraodontidae	ANCESTRAL SPECIES	9	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.a	ENSGT01030000235081.a	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Fugu	MODERN SPECIES	5	stc2 (ENSTRUG00000032377)	nkx2.5 (ENSTRUG00000010802)	BNIP1 (ENSTRUG00000020057)	atp6v0e1 (ENSTRUG00000010738)	rpl26l1 (ENSTRUG00000032099)	PPP2R2B (ENSTRUG00000010364)	GPR151 (ENSTRUG00000010343)	ADAM19 (ENSTRUG00000009860)	thg1l (ENSTRUG00000009758)	LSM11 (ENSTRUG00000009729)	clint1a (ENSTRUG00000009500)	EBF1 (ENSTRUG00000009320)	IL-12 p40 (ENSTRUG00000009097)	adrb2a (ENSTRUG00000009069)	SH3TC2 (ENSTRUG00000008708)	ablim3 (ENSTRUG00000008090) ##22	afap1l1a (ENSTRUG00000007424)	ENSTRUG00000007147	foxi3b (ENSTRUG00000026942)	ENSTRUG00000021681	wnt8 (ENSTRUG00000006709)	ENSTRUG00000025786	gria1a (ENSTRUG00000005608)	ENSTRUG00000005452	ENSTRUG00000005389	itk (ENSTRUG00000004405)	cyfip2 (ENSTRUG00000003384)	hmmr (ENSTRUG00000002533)	insb (ENSTRUG00000026875)	TENM2 (ENSTRUG00000002890)	ENSTRUG00000020086
Tetraodon	MODERN SPECIES		STC2 (ENSTNIG00000017076)	nkx2.5 (ENSTNIG00000017075)	BNIP1 (ENSTNIG00000017073)	atp6v0e1 (ENSTNIG00000017072)	rpl26 (ENSTNIG00000017071)	PPP2R2B (ENSTNIG00000017070)	GPR151 (ENSTNIG00000017069)	ADAM19 (ENSTNIG00000017068)	thg1l (ENSTNIG00000017067)	LSM11 (ENSTNIG00000017066)	clint1a (ENSTNIG00000017065)	EBF1 (ENSTNIG00000017063)	il12ba (ENSTNIG00000001796)	adrb2a (ENSTNIG00000017062)	SH3TC2 (ENSTNIG00000017061)	ablim3 (ENSTNIG00000017060) ##22	afap1l1a (ENSTNIG00000017059)	foxi3b (ENSTNIG00000017058)	WNT8A (ENSTNIG00000017057)	gria1a (ENSTNIG00000017056)	ENSTNIG00000017055	med7 (ENSTNIG00000019596)	itk (ENSTNIG00000003228)	cyfip2 (ENSTNIG00000003229)	ENSTNIG00000004977	ENSTNIG00000004978	ENSTNIG00000000734	ENSTNIG00000015791	TENM2 (ENSTNIG00000015790)	eif4ebp3l (ENSTNIG00000015789)	acsl4a (ENSTNIG00000015788)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Ballan wrasse	MODERN SPECIES	27											ENSLBEG00000012904	il12ba (ENSLBEG00000012935)	ENSLBEG00000012967	adrb2a (ENSLBEG00000012986)	SH3TC2 (ENSLBEG00000013012)	ablim3 (ENSLBEG00000013118) ##22	afap1l1a (ENSLBEG00000013290)	ENSLBEG00000013370	foxi3b (ENSLBEG00000013388)	ENSLBEG00000013404	ENSLBEG00000013436	ENSLBEG00000013476	WNT8A (ENSLBEG00000013500)	ENSLBEG00000013522	ENSLBEG00000013551	gria1a (ENSLBEG00000013604)	ENSLBEG00000013687	med7 (ENSLBEG00000013736)	itk (ENSLBEG00000013777)	cyfip2 (ENSLBEG00000013896)	hmmr (ENSLBEG00000014021)
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135
European seabass	MODERN SPECIES	12	msx2a (ENSDLAG00005001228)	cpeb4a (ENSDLAG00005001293)	ENSDLAG00005001491	nkx2.5 (ENSDLAG00005031252)	ENSDLAG00005033905	ENSDLAG00005001619	ENSDLAG00005031126	ENSDLAG00005002241	ENSDLAG00005029288	LSM11 (ENSDLAG00005003399)	clint1a (ENSDLAG00005003411)	EBF1 (ENSDLAG00005003583)	il12ba (ENSDLAG00005004098)	adrb2a (ENSDLAG00005028975)	SH3TC2 (ENSDLAG00005004142)	ablim3 (ENSDLAG00005004497) ##22	afap1l1a (ENSDLAG00005006940)	ENSDLAG00005006968	foxi3b (ENSDLAG00005006986)	ENSDLAG00005027845	ENSDLAG00005034197	ENSDLAG00005006995	ENSDLAG00005007017	ENSDLAG00005007043	gria1a (ENSDLAG00005007100)	ENSDLAG00005008309	med7 (ENSDLAG00005008337)	itk (ENSDLAG00005008355)	cyfip2 (ENSDLAG00005008466)	ENSDLAG00005008728	ENSDLAG00005008755
Large yellow croaker	MODERN SPECIES		STC2 (ENSLCRG00005021436)	nkx2.5 (ENSLCRG00005021437)	BNIP1 (ENSLCRG00005000061)	atp6v0e1 (ENSLCRG00005000057)	rpl26 (ENSLCRG00005000065)	ENSLCRG00005000089	GPR151 (ENSLCRG00005000120)	ADAM19 (ENSLCRG00005000157)	thg1l (ENSLCRG00005000206)	LSM11 (ENSLCRG00005000218)	clint1a (ENSLCRG00005000238)	EBF1 (ENSLCRG00005000365)	il12ba (ENSLCRG00005001169)	adrb2a (ENSLCRG00005001170)	SH3TC2 (ENSLCRG00005001178)	ablim3 (ENSLCRG00005001204) ##22	afap1l1a (ENSLCRG00005001224)	ENSLCRG00005001229	foxi3b (ENSLCRG00005001232)	ENSLCRG00005001234	WNT8A (ENSLCRG00005001238)	ENSLCRG00005001244	gria1a (ENSLCRG00005001255)	ENSLCRG00005001302	ENSLCRG00005001303	itk (ENSLCRG00005001339)	cyfip2 (ENSLCRG00005002388)	hmmr (ENSLCRG00005002458)	insb (ENSLCRG00005002513)	TENM2 (ENSLCRG00005002714)	ENSLCRG00005006739
Gilthead seabream	MODERN SPECIES	9	nkx2.5 (ENSSAUG00010027499)	BNIP1 (ENSSAUG00010027497)	atp6v0e1 (ENSSAUG00010027496)	rpl26 (ENSSAUG00010027493)	ENSSAUG00010027485	GPR151 (ENSSAUG00010027479)	ENSSAUG00010027476	thg1l (ENSSAUG00010027475)	LSM11 (ENSSAUG00010027474)	clint1a (ENSSAUG00010027473)	EBF1 (ENSSAUG00010027457)	il12ba (ENSSAUG00010027455)	ENSSAUG00010027454	adrb2a (ENSSAUG00010027453)	SH3TC2 (ENSSAUG00010027450)	ablim3 (ENSSAUG00010027425) ##22	afap1l1a (ENSSAUG00010027415)	ENSSAUG00010027414	foxi3b (ENSSAUG00010027413)	ENSSAUG00010027412	ENSSAUG00010027410	ENSSAUG00010027409	WNT8A (ENSSAUG00010027407)	ENSSAUG00010027406	gria1a (ENSSAUG00010027364)	ENSSAUG00010027352	ENSSAUG00010027348	med7 (ENSSAUG00010027347)	itk (ENSSAUG00010027270)	cyfip2 (ENSSAUG00010027226)	hmmr (ENSSAUG00010027215)
Perciformes	ANCESTRAL SPECIES	13	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a
Channel bull blenny	MODERN SPECIES	1	STC2 (ENSCGOG00000014075)	BNIP1 (ENSCGOG00000014077)	nkx2.5 (ENSCGOG00000014081)	atp6v0e1 (ENSCGOG00000014083)	rpl26 (ENSCGOG00000014091)	ENSCGOG00000014103	GPR151 (ENSCGOG00000014195)	ADAM19 (ENSCGOG00000014207)	thg1l (ENSCGOG00000014601)	LSM11 (ENSCGOG00000014611)	clint1a (ENSCGOG00000014613)	EBF1 (ENSCGOG00000014632)	il12ba (ENSCGOG00000015518)	adrb2a (ENSCGOG00000015521)	SH3TC2 (ENSCGOG00000015522)	ablim3 (ENSCGOG00000015561) ##22	afap1l1a (ENSCGOG00000016278)	ENSCGOG00000016283	foxi3b (ENSCGOG00000016302)	ENSCGOG00000016304	foxi3b (ENSCGOG00000016314)	WNT8A (ENSCGOG00000016336)	ENSCGOG00000016341	ENSCGOG00000016347	gria1a (ENSCGOG00000016429)	ENSCGOG00000019787	ENSCGOG00000019788	itk (ENSCGOG00000019792)	cyfip2 (ENSCGOG00000019908)	hmmr (ENSCGOG00000021591)	insb (ENSCGOG00000021619)
Pike perch	MODERN SPECIES	176								thg1l (ENSSLUG00000004723)	clint1a (ENSSLUG00000004683)	EBF1 (ENSSLUG00000004604)	il12ba (ENSSLUG00000004572)	adrb2a (ENSSLUG00000004567)	SH3TC2 (ENSSLUG00000004490)	ENSSLUG00000004448	ENSSLUG00000004444	ablim3 (ENSSLUG00000003636) ##22	afap1l1a (ENSSLUG00000003524)	ENSSLUG00000003489	foxi3b (ENSSLUG00000003468)	ENSSLUG00000003452	WNT8A (ENSSLUG00000003440)	WNT8A (ENSSLUG00000003407)	ENSSLUG00000003387	gria1a (ENSSLUG00000002964)	ENSSLUG00000002911	med7 (ENSSLUG00000018216)	itk (ENSSLUG00000017987)	cyfip2 (ENSSLUG00000017941)	hmmr (ENSSLUG00000017920)	ENSSLUG00000017883	ENSSLUG00000017876
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00390000005989.a.b.a.a	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000176934	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT01100000264027	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b	ENSGT00390000007135	ENSGT01030000234566.e.b.a.b.c.a	ENSGT00940000165340
Stickleback	MODERN SPECIES	3	BNIP1 (ENSGACG00000018435)	atp6v0e1 (ENSGACG00000018438)	rpl26 (ENSGACG00000018439)	ENSGACG00000018440	GPR151 (ENSGACG00000018442)	ENSGACG00000018443	ADAM19 (ENSGACG00000018444)	thg1l (ENSGACG00000018445)	LSM11 (ENSGACG00000018447)	clint1a (ENSGACG00000018449)	EBF1 (ENSGACG00000018450)	il12ba (ENSGACG00000018453)	adrb2a (ENSGACG00000018455)	ENSGACG00000018456	SH3TC2 (ENSGACG00000018457)	ablim3 (ENSGACG00000018461) ##22	ENSGACG00000018464	ENSGACG00000018466	afap1l1a (ENSGACG00000018467)	ENSGACG00000018471	foxi3b (ENSGACG00000018474)	ENSGACG00000018475	WNT8A (ENSGACG00000018477)	gria1a (ENSGACG00000018480)	ENSGACG00000018483	ENSGACG00000018484	itk (ENSGACG00000018485)	cyfip2 (ENSGACG00000018487)	NXPE3 (ENSGACG00000018489)	hmmr (ENSGACG00000018490)	TENM2 (ENSGACG00000018493)
Lumpfish	MODERN SPECIES	1	STC2 (ENSCLMG00005021717)	nkx2.5 (ENSCLMG00005021716)	BNIP1 (ENSCLMG00005021715)	atp6v0e1 (ENSCLMG00005021713)	rpl26 (ENSCLMG00005021712)	ENSCLMG00005021711	GPR151 (ENSCLMG00005021710)	ENSCLMG00005021709	thg1l (ENSCLMG00005021707)	LSM11 (ENSCLMG00005021706)	clint1a (ENSCLMG00005021705)	EBF1 (ENSCLMG00005021682)	il12ba (ENSCLMG00005021650)	adrb2a (ENSCLMG00005021649)	SH3TC2 (ENSCLMG00005021648)	ablim3 (ENSCLMG00005021641) ##22	afap1l1a (ENSCLMG00005021637)	ENSCLMG00005021636	foxi3b (ENSCLMG00005021635)	ENSCLMG00005021634	ENSCLMG00005021632	WNT8A (ENSCLMG00005021630)	ENSCLMG00005021629	gria1a (ENSCLMG00005021575)	ENSCLMG00005021569	ENSCLMG00005021568	itk (ENSCLMG00005021460)	cyfip2 (ENSCLMG00005021130)	hmmr (ENSCLMG00005021108)	ENSCLMG00005021107	ENSCLMG00005021106
Pinecone sodierfish	MODERN SPECIES	1	nkx2.5 (ENSMMDG00005022739)	BNIP1 (ENSMMDG00005022734)	atp6v0e1 (ENSMMDG00005022732)	rpl26 (ENSMMDG00005022729)	ENSMMDG00005022719	GPR151 (ENSMMDG00005022716)	ADAM19 (ENSMMDG00005022706)	thg1l (ENSMMDG00005022704)	thg1l (ENSMMDG00005022703)	LSM11 (ENSMMDG00005022701)	clint1a (ENSMMDG00005022699)	EBF1 (ENSMMDG00005022694)	il12ba (ENSMMDG00005022654)	adrb2a (ENSMMDG00005022646)	SH3TC2 (ENSMMDG00005022645)	ablim3 (ENSMMDG00005022624) ##22	afap1l1a (ENSMMDG00005022619)	ENSMMDG00005022617	foxi3b (ENSMMDG00005022614)	zgc:194246 (ENSMMDG00005022613)	ENSMMDG00005022610	WNT8A (ENSMMDG00005022609)	ENSMMDG00005022606	gria1a (ENSMMDG00005022559)	ENSMMDG00005022552	ENSMMDG00005022550	itk (ENSMMDG00005022526)	cyfip2 (ENSMMDG00005021311)	hmmr (ENSMMDG00005021272)	insb (ENSMMDG00005021268)	ENSMMDG00005021266
Cod	MODERN SPECIES	1	NKX2-5 (ENSGMOG00000015370)	BNIP1 (ENSGMOG00000036420)	atp6v0e1 (ENSGMOG00000029150)	rpl26 (ENSGMOG00000015401)	ENSGMOG00000018383	ENSGMOG00000015432	ENSGMOG00000015440	ENSGMOG00000015482	LSM11 (ENSGMOG00000015497)	clint1a (ENSGMOG00000036912)	ebf3a (ENSGMOG00000015541)	ENSGMOG00000015572	ENSGMOG00000032788	adrb2a (ENSGMOG00000001811)	SH3TC2 (ENSGMOG00000001820)	ablim3 (ENSGMOG00000001852) ##22	afap1l1a (ENSGMOG00000001890)	ENSGMOG00000001922	foxi3b (ENSGMOG00000023911)	zgc:194246 (ENSGMOG00000024122)	ENSGMOG00000001947	ENSGMOG00000001956	ENSGMOG00000001977	gria1a (ENSGMOG00000014490)	ENSGMOG00000023039	ENSGMOG00000036215	ENSGMOG00000013791	ENSGMOG00000020070	itk (ENSGMOG00000013813)	cyfip2 (ENSGMOG00000013874)	hmmr (ENSGMOG00000013951)
Protacanthopterygii	ANCESTRAL SPECIES	19	ENSGT00390000014412.l	ENSGT00940000156866	ENSGT00390000014165	ENSGT00950000182864.a.b.b.a.b.a.b.b	ENSGT01030000234518.A.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00940000155650.a.b.d	ENSGT00950000182859.A.a.b.b.d.c.a	ENSGT00390000012630.A.b	ENSGT00390000007501	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.a.b ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT00940000158603	ENSGT00940000153203.A.a	ENSGT00940000168499	ENSGT00940000156901.A.d	ENSGT00940000158334	ENSGT00940000165206.d	ENSGT00940000163328.c	ENSGT00940000165340	ENSGT01030000234566.e.b.a.b.c.a	ENSGT00940000164327.b	ENSGT00390000007135	ENSGT00500000044831.a.a.b
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	143	ENSGT01030000234518.A.a.b.h	ENSGT00940000159624.g	ENSGT00390000011705.u	ENSGT00390000011705.v.b	ENSGT00390000012944.j	ENSGT00940000155650.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.a.a	ENSGT00940000154967.a.a.b	ENSGT00390000012630.A.b.c	ENSGT00940000155650.a.a.f	ENSGT00950000182859.A.a.b.b.d.c.a.a.b	ENSGT00390000012630.A.b.d	ENSGT00390000007501	ENSGT00940000159538.g.a.f	ENSGT00530000063812.B.c.b	ENSGT00950000182850.a.b.a.b.a.b.g.a ##22	ENSGT00940000159538.g.a.e
Salmoninae_a	ANCESTRAL SPECIES	41	ENSGT01030000234518.A.a.b.h	ENSGT00940000159624.g	ENSGT00390000011705.u	ENSGT00390000011705.v.b	ENSGT00390000012944.j	ENSGT00940000155650.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.a.a	ENSGT00940000154967.a.a.b	ENSGT00390000012630.A.b.c	ENSGT00940000155650.a.a.f	ENSGT00950000182859.A.a.b.b.d.c.a.a.b	ENSGT00390000012630.A.b.d	ENSGT00390000007501	ENSGT00940000159538.g.a.f	ENSGT00530000063812.B.c.b	ENSGT00950000182850.a.b.a.b.a.b.g.a ##22	ENSGT00940000159538.g.a.e	ENSGT00530000063812.B.c.a	ENSGT00950000182850.a.b.a.b.a.b.h ##22	ENSGT00950000183067.a.b.a.d.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a.e	ENSGT00940000158603.c	ENSGT00940000153203.A.a.c.a.a	ENSGT00940000168499.a	ENSGT00940000156901.A.d.d	ENSGT00940000158334.g.a	ENSGT00940000165206.d.b	ENSGT00940000153768.b.t.a.b.a.a.b	ENSGT00940000163328.c.a.a	ENSGT00940000165340.k.a
Salmo	ANCESTRAL SPECIES	24	ENSGT00940000158996.m.a	ENSGT00390000014412.l.c	ENSGT00940000156866.a.a	ENSGT00390000014165.i	ENSGT00950000182864.a.b.b.a.b.a.b.b.b	ENSGT01030000234518.A.a.b.g	ENSGT00940000159624.h	ENSGT00390000011705.v.a	ENSGT00390000012944.i	ENSGT00940000155650.a.a.f	ENSGT00950000182859.A.a.b.b.d.c.a.a.b	ENSGT00390000012630.A.b.d	ENSGT00390000007501.e	ENSGT00940000159538.g.a.f	ENSGT00530000063812.B.c.b	ENSGT00950000182850.a.b.a.b.a.b.g.a ##22	ENSGT00950000183067.a.b.a.d.c	ENSGT00940000164576.b.a.a.f	ENSGT01030000235237.d	ENSGT00940000158603.d	ENSGT00940000153203.A.a.c.a.b	ENSGT00940000168499.b	ENSGT00940000156901.A.d.c	ENSGT00940000158334.g.b	ENSGT00940000165206.d.a	ENSGT00940000163328.c.a.b	ENSGT00940000165340.k.b	ENSGT01030000234566.e.b.a.b.c.a.z.a	ENSGT00390000007135.h	ENSGT00500000044831.a.a.a.a.b.b	ENSGT00940000158850.p
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000076705	rl26 (ENSSSAG00000076707)	ENSSSAG00000119445	ENSSSAG00000099093	ENSSSAG00000070677	ENSSSAG00000112575	ENSSSAG00000044766	ENSSSAG00000068905	lsm11 (ENSSSAG00000068908)	ENSSSAG00000068917	EBF1 (ENSSSAG00000115078)	ENSSSAG00000068948	efcab9 (ENSSSAG00000068958)	ENSSSAG00000119290	SH3TC2 (ENSSSAG00000044258)	ENSSSAG00000068581 ##22	afap1l1a (ENSSSAG00000068597)	ENSSSAG00000106889	zgc:194246 (ENSSSAG00000002338)	ENSSSAG00000095964	ENSSSAG00000121770	ENSSSAG00000039848	ENSSSAG00000081971	ENSSSAG00000091861	hbegfa (ENSSSAG00000041283)	ENSSSAG00000115941	hnrnph1 (ENSSSAG00000041962)	ENSSSAG00000117628	ENSSSAG00000095630	ANKHD1 (ENSSSAG00000037820)	4EBP (ENSSSAG00000044218)
River trout	MODERN SPECIES	22	rpl26 (ENSSTUG00000000591)	ENSSTUG00000000598	GPR151 (ENSSTUG00000000621)	ENSSTUG00000000666	thg1l (ENSSTUG00000000985)	LSM11 (ENSSTUG00000001012)	clint1a (ENSSTUG00000001024)	ENSSTUG00000001066	EBF1 (ENSSTUG00000001083)	ENSSTUG00000001134	il12ba (ENSSTUG00000001143)	EFCAB9 (ENSSTUG00000001251)	adrb2a (ENSSTUG00000001260)	ENSSTUG00000001266	SH3TC2 (ENSSTUG00000001286)	ABLIM3 (ENSSTUG00000001359) ##22	afap1l1a (ENSSTUG00000001384)	foxi3b (ENSSTUG00000001426)	ENSSTUG00000001432	rmnd5b (ENSSTUG00000001443)	ENSSTUG00000001479	hbegfa (ENSSTUG00000001485)	ENSSTUG00000001510	hnrnph1 (ENSSTUG00000001666)	eif4ebp3l (ENSSTUG00000001765)	ENSSTUG00000001783	ENSSTUG00000001787	TENM2 (ENSSTUG00000001894)	ENSSTUG00000003277	hmmr (ENSSTUG00000003284)	cyfip2 (ENSSTUG00000003364)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.g.b.a ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.g.b.a ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.g.b.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.g.b.a ##22
Chinook salmon	MODERN SPECIES	654																ENSOTSG00005017032 ##22
Huchen	MODERN SPECIES	4819																ENSHHUG00000008796 ##22	ENSHHUG00000008801	ENSHHUG00000008827
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.g.b.b ##22
Huchen	MODERN SPECIES	2206																ENSHHUG00000032668 ##22	afap1l1b (ENSHHUG00000032672)	grpel2 (ENSHHUG00000032690)	nhp2 (ENSHHUG00000032691)	foxi3a (ENSHHUG00000032698)	ENSHHUG00000032699	zmat2 (ENSHHUG00000032717)	slbp2 (ENSHHUG00000032723)	fam53c (ENSHHUG00000032733)	ENSHHUG00000032742	ENSHHUG00000032905	ENSHHUG00000032910	ENSHHUG00000032916	ENSHHUG00000032918
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.g.b.b ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.a.b.g.b.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES	43	ENSGT00390000007125.b.a	ENSGT00940000156866.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.b	ENSGT00940000157770.a.b	ENSGT00940000161042.c	ENSGT00940000155650.a.b.c.b	ENSGT00950000182859.A.a.a.a.e	ENSGT00950000182859.A.a.b.b.c.b	ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a	ENSGT00940000157281.v	ENSGT00390000010107.v	ENSGT00390000012630.A.a.b	ENSGT00940000156641.m.b	ENSGT00940000159538.g.b.b	ENSGT00950000182850.a.b.a.b.b.o ##22	ENSGT00950000182850.a.b.a.b.a.b.g.b.b ##22	ENSGT00950000183067.a.b.a.c.e.b	ENSGT00390000005589.a.b.q	ENSGT00550000074939.a	ENSGT00940000164576.b.a.b.c	ENSGT00940000156835.l.b.b	ENSGT00390000010712	ENSGT00940000164705.f	ENSGT00530000063371.C.a.c	ENSGT00940000157061.b.k.b.a	ENSGT00940000168356	ENSGT00990000211609.b.b	ENSGT00940000165075.a.b.a.a	ENSGT00940000163509.b.g	ENSGT00940000163509.a.a.a.q.a	ENSGT00940000156944.a.a.g
Chinook salmon	MODERN SPECIES	23	GRXCR2 (ENSOTSG00005003615)	ENSOTSG00005003614	ENSOTSG00005003611	RBM27 (ENSOTSG00005003606)	pou4f3 (ENSOTSG00005003603)	drd1b (ENSOTSG00005003602)	msx2b (ENSOTSG00005003600)	bod1 (ENSOTSG00005003597)	STC2 (ENSOTSG00005003596)	BNIP1 (ENSOTSG00005003594)	CREBRF (ENSOTSG00005003593)	ENSOTSG00005003266	TCERG1 (ENSOTSG00005002993)	ENSOTSG00005002978	CLINT1 (ENSOTSG00005002962)	ENSOTSG00005002940 ##22	afap1l1b (ENSOTSG00005002926)	grpel2 (ENSOTSG00005002918)	nhp2 (ENSOTSG00005002916)	foxi3a (ENSOTSG00005002913)	ENSOTSG00005002896	zmat2 (ENSOTSG00005002892)	slbp2 (ENSOTSG00005002884)	fam53c (ENSOTSG00005002874)	ENSOTSG00005002717	ENSOTSG00005039704	timd4 (ENSOTSG00005039699)	havcr1 (ENSOTSG00005039698)	ADRA1B (ENSOTSG00005039695)	ENSOTSG00005039694	PWWP2A (ENSOTSG00005039693)
Salmoninae	ANCESTRAL SPECIES	237	ENSGT00390000013444.a.b.b.b.e.b	ENSGT00390000013444.a.b.b.b.f	ENSGT00940000161486.j	ENSGT00940000166023	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b.i	ENSGT00940000155070.a.b.a.e	ENSGT00390000016784	ENSGT00390000009327	ENSGT00940000161394	ENSGT00940000162696.c.a.b	ENSGT00940000159450.a.a	ENSGT00940000157994.h	ENSGT00940000166590.c	ENSGT00530000063812.B.c.a	ENSGT00950000182850.a.b.a.b.a.b.h ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000164576.b.a.a.f	ENSGT01030000235237	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a.d	ENSGT00440000033329.a.a.a.i	ENSGT00940000165241	ENSGT00940000158850.p	ENSGT00500000044831.a.a.b	ENSGT00500000044831.a.a.a.a.b.a	ENSGT00390000007135.g	ENSGT00940000164327.b
Huchen	MODERN SPECIES	5282																ENSHHUG00000028070 ##22	ENSHHUG00000028077 ##22
Salmoninae_a	ANCESTRAL SPECIES	41	ENSGT00390000011705.v.b	ENSGT00390000012944.j	ENSGT00940000155650.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.a.a	ENSGT00940000154967.a.a.b	ENSGT00390000012630.A.b.c	ENSGT00940000155650.a.a.f	ENSGT00950000182859.A.a.b.b.d.c.a.a.b	ENSGT00390000012630.A.b.d	ENSGT00390000007501	ENSGT00940000159538.g.a.f	ENSGT00530000063812.B.c.b	ENSGT00950000182850.a.b.a.b.a.b.g.a ##22	ENSGT00940000159538.g.a.e	ENSGT00530000063812.B.c.a	ENSGT00950000182850.a.b.a.b.a.b.h ##22	ENSGT00950000183067.a.b.a.d.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a.e	ENSGT00940000158603.c	ENSGT00940000153203.A.a.c.a.a	ENSGT00940000168499.a	ENSGT00940000156901.A.d.d	ENSGT00940000158334.g.a	ENSGT00940000165206.d.b	ENSGT00940000153768.b.t.a.b.a.a.b	ENSGT00940000163328.c.a.a	ENSGT00940000165340.k.a	ENSGT01030000234566.e.b.a.b.c.a.z.b	ENSGT01090000260313.a.a.b.a	ENSGT00940000164327.b
Salmo	ANCESTRAL SPECIES	47	ENSGT00390000014412.l.d	ENSGT00940000156866.a.b	ENSGT00390000014165.j	ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b	ENSGT01030000234518.A.a.b.h	ENSGT00940000159624.g	ENSGT00390000011705.u	ENSGT00390000012944.j	ENSGT00940000155650.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.a.a	ENSGT00940000154967.a.a.b	ENSGT00390000012630.A.b.c	ENSGT00390000007501.f	ENSGT00940000159538.g.a.e	ENSGT00530000063812.B.c.a	ENSGT00950000182850.a.b.a.b.a.b.h ##22	ENSGT00950000183067.a.b.a.d.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a.e	ENSGT00940000158603.c	ENSGT00940000153203.A.a.c.a.a	ENSGT00940000168499.a	ENSGT00940000156901.A.d.d	ENSGT00940000158334.g.a	ENSGT00940000165206.d.b	ENSGT00940000153768.b.t.a.b.b	ENSGT00940000163328.c.b	ENSGT00940000163328.c.a.a	ENSGT00940000165340.k.a	ENSGT01030000234566.e.b.a.b.c.a.z.b	ENSGT01090000260313.a.a.b.a
River trout	MODERN SPECIES	4	atp6v0e1 (ENSSTUG00000046147)	rpl26 (ENSSTUG00000046141)	ENSSTUG00000046137	GPR151 (ENSSTUG00000046133)	ENSSTUG00000046049	ENSSTUG00000046037	ENSSTUG00000046032	ENSSTUG00000046030	ENSSTUG00000045961	ENSSTUG00000045947	il12ba (ENSSTUG00000045936)	ENSSTUG00000045926	adrb2a (ENSSTUG00000045922)	ENSSTUG00000045920	SH3TC2 (ENSSTUG00000045662)	ABLIM3 (ENSSTUG00000045596) ##22	afap1l1a (ENSSTUG00000045558)	ENSSTUG00000045548	foxi3b (ENSSTUG00000045541)	ENSSTUG00000045520	rmnd5b (ENSSTUG00000045442)	ENSSTUG00000045434	hbegfa (ENSSTUG00000045420)	ENSSTUG00000045393	hnrnph1 (ENSSTUG00000045375)	ENSSTUG00000043299	eif4ebp3l (ENSSTUG00000043166)	ENSSTUG00000043158	ENSSTUG00000043145	ENSSTUG00000043128	ENSSTUG00000043115
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000100909	atp6v0e1 (ENSSSAG00000045502)	rpl26 (ENSSSAG00000045463)	ENSSSAG00000104483	ENSSSAG00000044973	ENSSSAG00000087715	ENSSSAG00000044706	LSM11 (ENSSSAG00000044648)	ENSSSAG00000044622	EBF1 (ENSSSAG00000041858)	ENSSSAG00000041836	il12ba (ENSSSAG00000041830)	ENSSSAG00000098102	ENSSSAG00000041803	SH3TC2 (ENSSSAG00000041691)	ENSSSAG00000040583 ##22	afap1l1a (ENSSSAG00000040443)	ENSSSAG00000087064	ENSSSAG00000040168	ENSSSAG00000068610	foxi3b (ENSSSAG00000040153)	ENSSSAG00000040143	ENSSSAG00000085319	ENSSSAG00000106022	hbegfa (ENSSSAG00000039824)	ENSSSAG00000100256	hnrnph1 (ENSSSAG00000038087)	ANKHD1 (ENSSSAG00000071680)	ENSSSAG00000037917	eif4ebp3l (ENSSSAG00000071597)	cystm1 (ENSSSAG00000071594)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	45	ENSGT00390000005989.a.b.a.a.a	ENSGT00940000158996.m.a	ENSGT00390000014412.l.c	ENSGT00940000156866.a.a	ENSGT00390000014165.i	ENSGT00950000182864.a.b.b.a.b.a.b.b.b	ENSGT01030000234518.A.a.b.g	ENSGT00940000159624.h.b	ENSGT00390000012944.i	ENSGT00940000155650.a.a.f	ENSGT00950000182859.A.a.b.b.d.c.a.a.b	ENSGT00390000012630.A.b.d	ENSGT00390000007501	ENSGT00940000159538.g.a.f	ENSGT00530000063812.B.c.b	ENSGT00950000182850.a.b.a.b.a.b.h.a ##22	ENSGT00950000183067.a.b.a.d.c	ENSGT00940000164576.b.a.a.f	ENSGT00940000158603.d	ENSGT00940000153203.A.a.c.a.b	ENSGT00940000168499.b	ENSGT00940000156901.A.d.c	ENSGT00940000158334.g.b	ENSGT00940000165206.d.a	ENSGT00940000165340.k.b	ENSGT01030000234566.e.b.a.b.c.a.z.a	ENSGT00390000007135.h	ENSGT00500000044831.a.a.a.a.b.b	ENSGT00940000158850.p	ENSGT00940000154444.B	ENSGT00940000165241.c
Rainbow trout	MODERN SPECIES	5	rpl26 (ENSOMYG00000012270)	ENSOMYG00000053239	ENSOMYG00000019500	ENSOMYG00000064582	ENSOMYG00000047910	ENSOMYG00000061851	ENSOMYG00000067774	LSM11 (ENSOMYG00000015096)	ENSOMYG00000066391	EBF1 (ENSOMYG00000015081)	ENSOMYG00000015114	ENSOMYG00000076178	ENSOMYG00000050866	ENSOMYG00000071793	SH3TC2 (ENSOMYG00000019579)	ENSOMYG00000053543 ##22	afap1l1a (ENSOMYG00000012254)	ENSOMYG00000012242	ENSOMYG00000069189	ENSOMYG00000048509	ENSOMYG00000012121	ENSOMYG00000060465	ENSOMYG00000012093	ENSOMYG00000011955	hnrnph1 (ENSOMYG00000011895)	ENSOMYG00000051547	ENSOMYG00000011886	eif4ebp3l (ENSOMYG00000011863)	ENSOMYG00000066407	ENSOMYG00000057655	cyfip2 (ENSOMYG00000011670)
Oncorhynchus	ANCESTRAL SPECIES	34	ENSGT00390000005989.a.b.a.a.b	ENSGT00940000158996.m.b	ENSGT00390000014412.l.d	ENSGT00940000156866.a.b	ENSGT00390000014165.j	ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b	ENSGT01030000234518.A.a.b.h	ENSGT00940000159624.g	ENSGT00390000011705.v.a	ENSGT00940000155650.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.b.b	ENSGT00940000154967.a.a.b.i	ENSGT00390000012630.A.b.c	ENSGT00940000159538.g.a.e	ENSGT00530000063812.B.c.a	ENSGT00950000182850.a.b.a.b.a.b.h.b ##22	ENSGT00950000183067.a.b.a.d.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a.e	ENSGT00940000158603.c	ENSGT00940000153203.A.a.c.a.a	ENSGT00940000156901.A.d.d	ENSGT00940000158334.g.a	ENSGT00940000165206.d.b	ENSGT00940000153768.b.t.a.b.a.a.b	ENSGT00940000163328.c.a.a	ENSGT00940000165340.k.a	ENSGT01030000234566.e.b.a.b.c.a.z.b	ENSGT01090000260313.a.a.b.a	ENSGT00940000164327.b	ENSGT00390000007135.g
Rainbow trout	MODERN SPECIES	23	ENSOMYG00000019519	LSM11 (ENSOMYG00000019530)	ENSOMYG00000064299	ENSOMYG00000056049	ENSOMYG00000063906	EBF1 (ENSOMYG00000060398)	ENSOMYG00000072987	ENSOMYG00000019558	il12ba (ENSOMYG00000019564)	ENSOMYG00000072216	ENSOMYG00000071779	ENSOMYG00000072099	ENSOMYG00000058892	ENSOMYG00000052680	SH3TC2 (ENSOMYG00000071494)	ENSOMYG00000072163 ##22	afap1l1a (ENSOMYG00000019614)	ENSOMYG00000075117	foxi3b (ENSOMYG00000019630)	ENSOMYG00000048809	ENSOMYG00000019667	ENSOMYG00000068554	ENSOMYG00000073400	hbegfa (ENSOMYG00000076381)	ENSOMYG00000019758	hnrnph1 (ENSOMYG00000019772)	ENSOMYG00000060642	ANKHD1 (ENSOMYG00000019798)	eif4ebp3l (ENSOMYG00000019823)	ENSOMYG00000019826	ENSOMYG00000077500
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00940000154998.a.b.a.b	ENSGT00390000005989.a.b.a.a.b	ENSGT00940000158996.m.b	ENSGT00390000014412.l.d	ENSGT00940000156866.a.b	ENSGT00390000014165.j	ENSGT01030000234518.A.a.b.h	ENSGT00940000159624.g	ENSGT00390000011705.v.a	ENSGT00940000155650.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.b.b	ENSGT00940000154967.a.a.b.i	ENSGT00390000012630.A.b.c	ENSGT00940000159538.g.a.e	ENSGT00530000063812.B.c.a	ENSGT00950000182850.a.b.a.b.a.b.h.b ##22	ENSGT00950000183067.a.b.a.d.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a.e	ENSGT00940000158603.c	ENSGT00940000153203.A.a.c.a.a	ENSGT00940000156901.A.d.d	ENSGT00940000158334.g.a	ENSGT00940000165206.d.b	ENSGT00940000153768.b.t.a.b.a.a.b	ENSGT00940000163328.c.a.a	ENSGT00940000165340.k.a	ENSGT00940000164327.b	ENSGT00390000007135.g	ENSGT00500000044831.a.a.a.a.b.a	ENSGT00940000165241.d
Chinook salmon	MODERN SPECIES	106														ENSOTSG00005039007	adrb2a (ENSOTSG00005039085)	ENSOTSG00005039087 ##22	ENSOTSG00005039096	ENSOTSG00005039098	il12ba (ENSOTSG00005039100)	ENSOTSG00005039103	ENSOTSG00005039106	cpo (ENSOTSG00005039108)	ENSOTSG00005039122	TMC7 (ENSOTSG00005043557)	ENSOTSG00005043559	ENSOTSG00005043560	gsg1l (ENSOTSG00005043773)	dtd1 (ENSOTSG00005043789)	SLK (ENSOTSG00005043800)	stn1 (ENSOTSG00005044154)	SH3PXD2A (ENSOTSG00005044156)
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	6	BNIP1 (ENSOKIG00005025175)	atp6v0e1 (ENSOKIG00005025201)	rpl26 (ENSOKIG00005025221)	GPR151 (ENSOKIG00005025245)	ENSOKIG00005025343	thg1l (ENSOKIG00005026021)	ENSOKIG00005026030	ENSOKIG00005026042	ENSOKIG00005026048	ENSOKIG00005026058	ENSOKIG00005026069	ENSOKIG00005026091	il12ba (ENSOKIG00005026108)	adrb2a (ENSOKIG00005026111)	SH3TC2 (ENSOKIG00005026136)	ABLIM3 (ENSOKIG00005026342) ##22	ENSOKIG00005026877	ENSOKIG00005026883	foxi3b (ENSOKIG00005026891)	ENSOKIG00005026900	RMND5B (ENSOKIG00005026915)	ENSOKIG00005027147	hbegfa (ENSOKIG00005027158)	ENSOKIG00005027181	hnrnph1 (ENSOKIG00005027387)	ANKHD1 (ENSOKIG00005027463)	eif4ebp3l (ENSOKIG00005027920)	ENSOKIG00005027963	ENSOKIG00005027968	TENM2 (ENSOKIG00005028066)	ENSOKIG00005028662
Coho salmon	MODERN SPECIES	10	atp6v0e1 (ENSOKIG00005041743)	rpl26 (ENSOKIG00005041732)	ENSOKIG00005041725	ENSOKIG00005041714	GPR151 (ENSOKIG00005041698)	ENSOKIG00005041385	ENSOKIG00005041247	LSM11 (ENSOKIG00005041226)	CLINT1 (ENSOKIG00005040748)	EBF1 (ENSOKIG00005040636)	ENSOKIG00005040602	ENSOKIG00005040566	ADRB2 (ENSOKIG00005040557)	ENSOKIG00005040534	SH3TC2 (ENSOKIG00005040449)	ENSOKIG00005040391 ##22	afap1l1a (ENSOKIG00005040370)	ENSOKIG00005040357	ENSOKIG00005040327	rmnd5b (ENSOKIG00005040087)	hbegfa (ENSOKIG00005040047)	RUFY1 (ENSOKIG00005039317)	hnrnph1 (ENSOKIG00005039171)	ENSOKIG00005038796	TENM2 (ENSOKIG00005037787)	ENSOKIG00005037501	ENSOKIG00005037493	cyfip2 (ENSOKIG00005037307)	ENSOKIG00005037282	ENSOKIG00005037256	gria1a (ENSOKIG00005037097)
Northern pike	MODERN SPECIES	3	FLRT1 (ENSELUG00000007458)	fermt3b (ENSELUG00000007439)	trpt1 (ENSELUG00000007385)	ZBTB3 (ENSELUG00000007359)	rnaseh2c (ENSELUG00000007345)	zdhhc24 (ENSELUG00000007297)	LSM11 (ENSELUG00000007280)	clint1a (ENSELUG00000001078)	EBF1 (ENSELUG00000007199)	ENSELUG00000026279	il12ba (ENSELUG00000007092)	ENSELUG00000007054	ENSELUG00000033617	adrb2a (ENSELUG00000007046)	SH3TC2 (ENSELUG00000007026)	ABLIM3 (ENSELUG00000006966) ##22	afap1l1a (ENSELUG00000006908)	ENSELUG00000006843	foxi3b (ENSELUG00000006819)	zgc:194246 (ENSELUG00000000219)	ENSELUG00000006800	rmnd5b (ENSELUG00000006778)	hbegfa (ENSELUG00000006753)	RUFY1 (ENSELUG00000006741)	hnrnph1 (ENSELUG00000006715)	ANKHD1 (ENSELUG00000006674)	eif4ebp3l (ENSELUG00000006596)	ENSELUG00000030472	ENSELUG00000006587	TENM2 (ENSELUG00000006563)	ENSELUG00000024758
Gnathostomata	ANCESTRAL SPECIES	576														ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1685										ENSCMIG00000003171	ENSCMIG00000003165	ENSCMIG00000003159	adrb2a (ENSCMIG00000003155)	ENSCMIG00000003153	ENSCMIG00000003151	ENSCMIG00000003064 ##22	afap1l1a (ENSCMIG00000003031)	grpel2 (ENSCMIG00000003026)	PCYOX1L (ENSCMIG00000003012)	ENSCMIG00000003010
Elephant shark	MODERN SPECIES	722																ENSCMIG00000002760 ##22
Euteleostomi	ANCESTRAL SPECIES	283							ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854
Sarcopterygii	ANCESTRAL SPECIES	47	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.b	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a
Coelacanth	MODERN SPECIES	1182																ABLIM3 (ENSLACG00000001207) ##22	AFAP1L1 (ENSLACG00000004868)	GRPEL2 (ENSLACG00000006320)	PCYOX1L (ENSLACG00000006394)	IL17B (ENSLACG00000006880)	CSNK1A1 (ENSLACG00000008673)	ARHGEF37 (ENSLACG00000009628)	PPARGC1B (ENSLACG00000011232)	ENSLACG00000011710	PDE6A (ENSLACG00000012002)	SLC26A2 (ENSLACG00000012512)	ENSLACG00000012970
Tetrapoda	ANCESTRAL SPECIES	29	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.b	ENSGT00390000014165.d	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000158761	ENSGT00950000182938.b.b.a	ENSGT00940000158129
Anura	ANCESTRAL SPECIES		ENSGT00940000154909	ENSGT00940000158782	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00940000154856.A.a	ENSGT00940000157856	ENSGT00390000005154	ENSGT00940000158670	ENSGT00940000154966	ENSGT00390000004149	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT01090000260260	ENSGT00940000158761	ENSGT00950000182938.b.b.a	ENSGT00940000158129
Leishan spiny toad	MODERN SPECIES	6	DUSP1 (ENSLLEG00000007651)	ENSLLEG00000007678	ENSLLEG00000007690	ENSLLEG00000007700	NEURL1B (ENSLLEG00000007712)	SH3PXD2B (ENSLLEG00000007755)	STK10 (ENSLLEG00000007889)	UBTD2 (ENSLLEG00000008051)	ENSLLEG00000008087	ADRB2 (ENSLLEG00000008145)	ENSLLEG00000008163	ENSLLEG00000008172	SH3TC2 (ENSLLEG00000008218)	ENSLLEG00000008519	ENSLLEG00000008540	ABLIM3 (ENSLLEG00000008655) ##22	AFAP1L1 (ENSLLEG00000009809)	GRPEL2 (ENSLLEG00000010154)	PCYOX1L (ENSLLEG00000010203)	IL17B (ENSLLEG00000010266)	CSNK1A1 (ENSLLEG00000010398)	ENSLLEG00000010913	ARHGEF37 (ENSLLEG00000010958)	PPARGC1B (ENSLLEG00000011230)	PDE6A (ENSLLEG00000011396)	SLC26A2 (ENSLLEG00000011545)	ENSLLEG00000011579	ENSLLEG00000011619	ENSLLEG00000011675	HTR4 (ENSLLEG00000011727)	FBXO38 (ENSLLEG00000012045)
Frog	MODERN SPECIES	3	tlr22 (ENSXETG00000046119)	dusp1 (ENSXETG00000027880)	ergic1 (ENSXETG00000018301)	neurl1b (ENSXETG00000001703)	ENSXETG00000040995	ENSXETG00000042376	sh3pxd2b (ENSXETG00000038056)	pole4 (ENSXETG00000014422)	stk10 (ENSXETG00000014423)	ENSXETG00000042783	ubtd2 (ENSXETG00000014428)	adrb2 (ENSXETG00000037096)	ENSXETG00000045119	sh3tc2 (ENSXETG00000030692)	ENSXETG00000047343	ablim3 (ENSXETG00000030469) ##22	afap1l1 (ENSXETG00000032942)	grpel2 (ENSXETG00000020835)	ENSXETG00000048140	pcyox1l (ENSXETG00000033269)	csnk1a1 (ENSXETG00000020861)	ppp2r2b (ENSXETG00000020864)	ENSXETG00000046970	GPR151 (ENSXETG00000002325)	pou4f3 (ENSXETG00000041097)	ENSXETG00000045329	rbm27 (ENSXETG00000002324)	lars1 (ENSXETG00000002320)	sh3rf2 (ENSXETG00000002319)	grxcr2 (ENSXETG00000032005)	ENSXETG00000043029
Amniota	ANCESTRAL SPECIES	17	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.b	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000158761	ENSGT00950000182938.b.a
Mammalia	ANCESTRAL SPECIES	30														ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00900000141664	ENSGT00530000064225	ENSGT00520000060726
Theria	ANCESTRAL SPECIES	18	ENSGT00940000158129	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00990000204698	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00900000141664	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Eutheria	ANCESTRAL SPECIES	6	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Glires	ANCESTRAL SPECIES	7	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Rodentia	ANCESTRAL SPECIES	7	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000166334	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Kangaroo rat	MODERN SPECIES	404	Dpysl3 (ENSDORG00000004716)	Jakmip2 (ENSDORG00000006820)	Spink1 (ENSDORG00000014987)	ENSDORG00000004967	Gm94 (ENSDORG00000003474)	Spink5 (ENSDORG00000009521)	Spink6 (ENSDORG00000005808)	Gm37797 (ENSDORG00000026147)	ENSDORG00000027988	Spink7 (ENSDORG00000015485)	Gm36368 (ENSDORG00000025096)	Fbxo38 (ENSDORG00000008958)	Htr4 (ENSDORG00000011917)	ENSDORG00000024403	Sh3tc2 (ENSDORG00000016298)	Ablim3 (ENSDORG00000004812) ##22	Afap1l1 (ENSDORG00000013435)	Grpel2 (ENSDORG00000029163)	Pcyox1l (ENSDORG00000011140)	Il17b (ENSDORG00000011138)	ENSDORG00000011907	Arhgef37 (ENSDORG00000016036)	Ppargc1b (ENSDORG00000012605)	Pde6a (ENSDORG00000012607)	Slc26a2 (ENSDORG00000027006)	Hmgxb3 (ENSDORG00000009890)	Csf1r (ENSDORG00000009892)	Pdgfrb (ENSDORG00000009895)	Cdx1 (ENSDORG00000029630)	Slc6a7 (ENSDORG00000000014)	Camk2a (ENSDORG00000009223)
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000166334	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Muroidea	ANCESTRAL SPECIES	4								ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00950000183103.d.a.b	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.c.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.c.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Northern American deer mouse	MODERN SPECIES	10	Wdr7 (ENSPEMG00000010069)	Txnl1 (ENSPEMG00000017177)	ENSPEMG00000005223	ENSPEMG00000005013	Piezo2 (ENSPEMG00000009069)	Napg (ENSPEMG00000017100)	Apcdd1 (ENSPEMG00000018854)	ENSPEMG00000010935	Spink13 (ENSPEMG00000010732)	Spink7 (ENSPEMG00000009248)	Gm36368 (ENSPEMG00000008650)	Fbxo38 (ENSPEMG00000003062)	Htr4 (ENSPEMG00000018290)	Adrb2 (ENSPEMG00000018963)	Sh3tc2 (ENSPEMG00000002472)	Ablim3 (ENSPEMG00000006536) ##22	Afap1l1 (ENSPEMG00000012507)	ENSPEMG00000031083	Pcyox1l (ENSPEMG00000008397)	Il17b (ENSPEMG00000016022)	Csnk1a1 (ENSPEMG00000015069)	Arhgef37 (ENSPEMG00000006816)	Ppargc1b (ENSPEMG00000018822)	Pde6a (ENSPEMG00000007308)	Slc26a2 (ENSPEMG00000026991)	Hmgxb3 (ENSPEMG00000009704)	Csf1r (ENSPEMG00000010942)	Pdgfrb (ENSPEMG00000016131)	Cdx1 (ENSPEMG00000029534)	Slc6a7 (ENSPEMG00000015046)	Camk2a (ENSPEMG00000016613)
Prairie vole	MODERN SPECIES	5	St8sia3 (ENSMOCG00000016467)	Wdr7 (ENSMOCG00000019471)	Txnl1 (ENSMOCG00000015339)	Piezo2 (ENSMOCG00000021619)	Napg (ENSMOCG00000018422)	Apcdd1 (ENSMOCG00000009393)	ENSMOCG00000002924	ENSMOCG00000022868	Spink13 (ENSMOCG00000019263)	Spink7 (ENSMOCG00000017843)	Gm36368 (ENSMOCG00000003300)	Fbxo38 (ENSMOCG00000015410)	Htr4 (ENSMOCG00000007510)	Adrb2 (ENSMOCG00000002446)	Sh3tc2 (ENSMOCG00000001886)	Ablim3 (ENSMOCG00000022187) ##22	Afap1l1 (ENSMOCG00000009034)	Grpel2 (ENSMOCG00000005100)	Pcyox1l (ENSMOCG00000002804)	Il17b (ENSMOCG00000003368)	Csnk1a1 (ENSMOCG00000014668)	Arhgef37 (ENSMOCG00000017841)	Ppargc1b (ENSMOCG00000014885)	Pde6a (ENSMOCG00000007130)	Slc26a2 (ENSMOCG00000020889)	Hmgxb3 (ENSMOCG00000014574)	Csf1r (ENSMOCG00000018935)	Pdgfrb (ENSMOCG00000015349)	Cdx1 (ENSMOCG00000005003)	Slc6a7 (ENSMOCG00000021402)	Camk2a (ENSMOCG00000006768)
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00950000183103.d.a.b	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.c.a	ENSGT00390000011206.b.e	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Chinese hamster chok1gshd	MODERN SPECIES	153	Onecut2 (ENSCGRG00001019906)	St8sia3 (ENSCGRG00001023138)	Wdr7 (ENSCGRG00001010802)	Txnl1 (ENSCGRG00001004048)	Piezo2 (ENSCGRG00001023508)	Napg (ENSCGRG00001018518)	Apcdd1 (ENSCGRG00001023871)	ENSCGRG00001011180	Spink13 (ENSCGRG00001022801)	Spink7 (ENSCGRG00001024419)	Gm36368 (ENSCGRG00001012234)	Fbxo38 (ENSCGRG00001021538)	Htr4 (ENSCGRG00001012683)	Adrb2 (ENSCGRG00001009662)	Sh3tc2 (ENSCGRG00001020826)	Ablim3 (ENSCGRG00001021818) ##22	Afap1l1 (ENSCGRG00001018190)	ENSCGRG00001022902	ENSCGRG00001024056	Il17b (ENSCGRG00001005197)	ENSCGRG00001021849	Csnk1a1 (ENSCGRG00001015873)	Arhgef37 (ENSCGRG00001011933)	Ppargc1b (ENSCGRG00001017949)	Pde6a (ENSCGRG00001018960)	Slc26a2 (ENSCGRG00001016363)	Hmgxb3 (ENSCGRG00001022214)	Csf1r (ENSCGRG00001013504)	Pdgfrb (ENSCGRG00001022643)	Cdx1 (ENSCGRG00001016843)	Slc6a7 (ENSCGRG00001006717)
Golden Hamster	MODERN SPECIES	665	Onecut2 (ENSMAUG00000009580)	St8sia3 (ENSMAUG00000000556)	Wdr7 (ENSMAUG00000009364)	Txnl1 (ENSMAUG00000017294)	Piezo2 (ENSMAUG00000015407)	ENSMAUG00000000968	Apcdd1 (ENSMAUG00000010015)	ENSMAUG00000013780	Spink13 (ENSMAUG00000007928)	Spink7 (ENSMAUG00000009498)	Gm36368 (ENSMAUG00000015079)	Fbxo38 (ENSMAUG00000019180)	Htr4 (ENSMAUG00000006143)	Adrb2 (ENSMAUG00000017373)	Sh3tc2 (ENSMAUG00000019540)	Ablim3 (ENSMAUG00000019807) ##22	Afap1l1 (ENSMAUG00000010737)	Grpel2 (ENSMAUG00000014948)	Il17b (ENSMAUG00000015682)	Csnk1a1 (ENSMAUG00000001051)	Arhgef37 (ENSMAUG00000005987)	Ppargc1b (ENSMAUG00000014191)	Pde6a (ENSMAUG00000002281)	Slc26a2 (ENSMAUG00000013332)	Hmgxb3 (ENSMAUG00000018828)	Csf1r (ENSMAUG00000009005)	Pdgfrb (ENSMAUG00000012051)	Cdx1 (ENSMAUG00000013537)	Slc6a7 (ENSMAUG00000009461)	Camk2a (ENSMAUG00000019808)	Arsi (ENSMAUG00000000226)
Murinae	ANCESTRAL SPECIES	17	ENSGT00950000183103.d.a.b	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Mus	ANCESTRAL SPECIES	19	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00800000125342	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Mus_A	ANCESTRAL SPECIES	19	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00800000125342	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Mus_B	ANCESTRAL SPECIES	19	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00800000125342	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Mus_C	ANCESTRAL SPECIES	16	ENSGT01030000234535.E	ENSGT00940000155301	ENSGT00940000156170	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000164814.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00800000125342	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Steppe mouse	MODERN SPECIES	3286	Wdr7 (ENSMSIG00000005908)	Txnl1 (ENSMSIG00000005854)	Piezo2 (ENSMSIG00000005610)	Napg (ENSMSIG00000005506)	Apcdd1 (ENSMSIG00000005484)	ENSMSIG00000005473	Spink10 (ENSMSIG00000005386)	Spink13 (ENSMSIG00000005361)	Spink7 (ENSMSIG00000005347)	Gm36368 (ENSMSIG00000005324)	Fbxo38 (ENSMSIG00000005266)	Htr4 (ENSMSIG00000005233)	ENSMSIG00000005210	Adrb2 (ENSMSIG00000005196)	Sh3tc2 (ENSMSIG00000005138)	Ablim3 (ENSMSIG00000004941) ##22	Afap1l1 (ENSMSIG00000004885)	Grpel2 (ENSMSIG00000004877)	Pcyox1l (ENSMSIG00000004853)	Il17b (ENSMSIG00000004841)
spretus	MODERN SPECIES	9	MGP_SPRETEiJ_G0023257	St8sia3 (MGP_SPRETEiJ_G0023256)	Wdr7 (MGP_SPRETEiJ_G0023255)	Txnl1 (MGP_SPRETEiJ_G0023254)	Piezo2 (MGP_SPRETEiJ_G0023253)	Napg (MGP_SPRETEiJ_G0023252)	Apcdd1 (MGP_SPRETEiJ_G0023251)	Spink10 (MGP_SPRETEiJ_G0023250)	Spink13 (MGP_SPRETEiJ_G0023249)	Spink7 (MGP_SPRETEiJ_G0023248)	Fbxo38 (MGP_SPRETEiJ_G0023247)	Htr4 (MGP_SPRETEiJ_G0023246)	MGP_SPRETEiJ_G0023245	Adrb2 (MGP_SPRETEiJ_G0023244)	Sh3tc2 (MGP_SPRETEiJ_G0023243)	Ablim3 (MGP_SPRETEiJ_G0023242) ##22	Afap1l1 (MGP_SPRETEiJ_G0023241)	Grpel2 (MGP_SPRETEiJ_G0023240)	Pcyox1l (MGP_SPRETEiJ_G0023239)	Il17b (MGP_SPRETEiJ_G0023238)	Csnk1a1 (MGP_SPRETEiJ_G0023237)	Arhgef37 (MGP_SPRETEiJ_G0023236)	Ppargc1b (MGP_SPRETEiJ_G0023235)	Pde6a (MGP_SPRETEiJ_G0023234)	Slc26a2 (MGP_SPRETEiJ_G0023233)	Hmgxb3 (MGP_SPRETEiJ_G0023232)	Csf1r (MGP_SPRETEiJ_G0023231)	Pdgfrb (MGP_SPRETEiJ_G0023230)	Cdx1 (MGP_SPRETEiJ_G0023229)	Slc6a7 (MGP_SPRETEiJ_G0023228)	Camk2a (MGP_SPRETEiJ_G0023227)
Mouse	MODERN SPECIES	9	Onecut2 (ENSMUSG00000045991)	St8sia3 (ENSMUSG00000056812)	Wdr7 (ENSMUSG00000040560)	Txnl1 (ENSMUSG00000024583)	Piezo2 (ENSMUSG00000041482)	Napg (ENSMUSG00000024581)	Apcdd1 (ENSMUSG00000071847)	Spink13 (ENSMUSG00000073551)	Spink7 (ENSMUSG00000060201)	Gm36368 (ENSMUSG00000110576)	Spink10 (ENSMUSG00000044176)	Fbxo38 (ENSMUSG00000042211)	Htr4 (ENSMUSG00000026322)	Adrb2 (ENSMUSG00000045730)	Sh3tc2 (ENSMUSG00000045629)	Ablim3 (ENSMUSG00000032735) ##22	Afap1l1 (ENSMUSG00000033032)	Grpel2 (ENSMUSG00000024580)	Pcyox1l (ENSMUSG00000024579)	Il17b (ENSMUSG00000024578)	Csnk1a1 (ENSMUSG00000024576)	Arhgef37 (ENSMUSG00000045094)	Ppargc1b (ENSMUSG00000033871)	Pde6a (ENSMUSG00000024575)	Slc26a2 (ENSMUSG00000034320)	Hmgxb3 (ENSMUSG00000024622)	Csf1r (ENSMUSG00000024621)	Pdgfrb (ENSMUSG00000024620)	Cdx1 (ENSMUSG00000024619)	Slc6a7 (ENSMUSG00000052026)	Camk2a (ENSMUSG00000024617)
Ryukyu mouse	MODERN SPECIES	9	St8sia3 (MGP_CAROLIEiJ_G0022345)	Wdr7 (MGP_CAROLIEiJ_G0022344)	Txnl1 (MGP_CAROLIEiJ_G0022343)	Piezo2 (MGP_CAROLIEiJ_G0022342)	Napg (MGP_CAROLIEiJ_G0022341)	Apcdd1 (MGP_CAROLIEiJ_G0022340)	MGP_CAROLIEiJ_G0022339	Spink10 (MGP_CAROLIEiJ_G0022338)	Spink13 (MGP_CAROLIEiJ_G0022337)	Spink7 (MGP_CAROLIEiJ_G0022336)	Fbxo38 (MGP_CAROLIEiJ_G0022335)	Htr4 (MGP_CAROLIEiJ_G0022334)	MGP_CAROLIEiJ_G0022333	Adrb2 (MGP_CAROLIEiJ_G0022332)	Sh3tc2 (MGP_CAROLIEiJ_G0022331)	Ablim3 (MGP_CAROLIEiJ_G0022330) ##22	Afap1l1 (MGP_CAROLIEiJ_G0022329)	Grpel2 (MGP_CAROLIEiJ_G0022328)	Pcyox1l (MGP_CAROLIEiJ_G0022327)	Il17b (MGP_CAROLIEiJ_G0022326)	Csnk1a1 (MGP_CAROLIEiJ_G0022325)	Arhgef37 (MGP_CAROLIEiJ_G0022324)	Ppargc1b (MGP_CAROLIEiJ_G0022323)	Pde6a (MGP_CAROLIEiJ_G0022322)	Slc26a2 (MGP_CAROLIEiJ_G0022321)	Hmgxb3 (MGP_CAROLIEiJ_G0022320)	Csf1r (MGP_CAROLIEiJ_G0022319)	Pdgfrb (MGP_CAROLIEiJ_G0022318)	Cdx1 (MGP_CAROLIEiJ_G0022317)	Slc6a7 (MGP_CAROLIEiJ_G0022316)	Camk2a (MGP_CAROLIEiJ_G0022315)
Shrew mouse	MODERN SPECIES	6	Onecut2 (MGP_PahariEiJ_G0019075)	St8sia3 (MGP_PahariEiJ_G0019074)	Wdr7 (MGP_PahariEiJ_G0019073)	Txnl1 (MGP_PahariEiJ_G0019072)	Piezo2 (MGP_PahariEiJ_G0019071)	Napg (MGP_PahariEiJ_G0019070)	Apcdd1 (MGP_PahariEiJ_G0019069)	Spink10 (MGP_PahariEiJ_G0019068)	Spink13 (MGP_PahariEiJ_G0019067)	Spink7 (MGP_PahariEiJ_G0019066)	Fbxo38 (MGP_PahariEiJ_G0019065)	Htr4 (MGP_PahariEiJ_G0019064)	MGP_PahariEiJ_G0019063	Adrb2 (MGP_PahariEiJ_G0019062)	Sh3tc2 (MGP_PahariEiJ_G0019061)	Ablim3 (MGP_PahariEiJ_G0019060) ##22	Afap1l1 (MGP_PahariEiJ_G0019059)	Grpel2 (MGP_PahariEiJ_G0019058)	Pcyox1l (MGP_PahariEiJ_G0019057)	Il17b (MGP_PahariEiJ_G0019056)	Csnk1a1 (MGP_PahariEiJ_G0019055)	Arhgef37 (MGP_PahariEiJ_G0019054)	Ppargc1b (MGP_PahariEiJ_G0019053)	Pde6a (MGP_PahariEiJ_G0019052)	Slc26a2 (MGP_PahariEiJ_G0019051)	Hmgxb3 (MGP_PahariEiJ_G0019050)	Csf1r (MGP_PahariEiJ_G0019049)	Pdgfrb (MGP_PahariEiJ_G0019048)	Cdx1 (MGP_PahariEiJ_G0019047)	Slc6a7 (MGP_PahariEiJ_G0019046)	Camk2a (MGP_PahariEiJ_G0019045)
Rat	MODERN SPECIES	9	AABR07032277.1 (ENSRNOG00000050226)	Wdr7 (ENSRNOG00000018387)	Txnl1 (ENSRNOG00000018818)	Piezo2 (ENSRNOG00000038784)	Napg (ENSRNOG00000018914)	Apcdd1 (ENSRNOG00000043304)	Spink10 (ENSRNOG00000043250)	Spink13 (ENSRNOG00000038793)	Spink7 (ENSRNOG00000032873)	LOC102547035 (ENSRNOG00000058091)	Fbxo38 (ENSRNOG00000019063)	Htr4 (ENSRNOG00000019134)	ENSRNOG00000068793	Adrb2 (ENSRNOG00000019217)	Sh3tc2 (ENSRNOG00000019305)	Ablim3 (ENSRNOG00000019365) ##22	Afap1l1 (ENSRNOG00000019403)	Grpel2 (ENSRNOG00000064275)	Pcyox1l (ENSRNOG00000019643)	Il17b (ENSRNOG00000019695)	Csnk1a1 (ENSRNOG00000063313)	Arhgef37 (ENSRNOG00000025502)	Ppargc1b (ENSRNOG00000017503)	Pde6a (ENSRNOG00000017816)	Slc26a2 (ENSRNOG00000018082)	Hmgxb3 (ENSRNOG00000018132)	Csf1r (ENSRNOG00000018414)	Pdgfrb (ENSRNOG00000018461)	Cdx1 (ENSRNOG00000060334)	Slc6a7 (ENSRNOG00000018644)	Camk2a (ENSRNOG00000018712)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1018												Htr4 (ENSNGAG00000017150)	Sh3tc2 (ENSNGAG00000018960)	ENSNGAG00000020126	ENSNGAG00000020302	Ablim3 (ENSNGAG00000001557) ##22	Afap1l1 (ENSNGAG00000009627)	ENSNGAG00000011362	Grpel2 (ENSNGAG00000011908)	Pcyox1l (ENSNGAG00000012349)	Il17b (ENSNGAG00000013221)	ENSNGAG00000014437	Arhgef37 (ENSNGAG00000015605)	Ppargc1b (ENSNGAG00000016998)	Pde6a (ENSNGAG00000019377)	Slc26a2 (ENSNGAG00000019650)
Lesser Egyptian jerboa	MODERN SPECIES	113	Spink1 (ENSJJAG00000006429)	Scgb3a2 (ENSJJAG00000010077)	Gm94 (ENSJJAG00000017623)	Spink5 (ENSJJAG00000022352)	Spink6 (ENSJJAG00000009856)	ENSJJAG00000012629	ENSJJAG00000019051	Spink13 (ENSJJAG00000020648)	Spink7 (ENSJJAG00000023412)	Gm36368 (ENSJJAG00000023568)	Fbxo38 (ENSJJAG00000002802)	Htr4 (ENSJJAG00000017156)	ENSJJAG00000020095	ENSJJAG00000017717	Sh3tc2 (ENSJJAG00000018953)	Ablim3 (ENSJJAG00000023419) ##22	ENSJJAG00000021995	ENSJJAG00000001426	Pcyox1l (ENSJJAG00000010362)	Il17b (ENSJJAG00000013607)	ENSJJAG00000017594	ENSJJAG00000021433	Arhgef37 (ENSJJAG00000022039)	ENSJJAG00000015885	Ppargc1b (ENSJJAG00000018633)	ENSJJAG00000019481	Pde6a (ENSJJAG00000003639)	Slc26a2 (ENSJJAG00000010661)	Hmgxb3 (ENSJJAG00000012795)	Csf1r (ENSJJAG00000022296)	ENSJJAG00000014141
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.x.b.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Marmotini	ANCESTRAL SPECIES	23	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.x.b.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Marmotini_b	ANCESTRAL SPECIES	16	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.x.b.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Arctic ground squirrel	MODERN SPECIES	29	C5orf46 (ENSUPAG00010012996)	ENSUPAG00010013005	ENSUPAG00010013016	SPINK14 (ENSUPAG00010013021)	SPINK6 (ENSUPAG00010013044)	ENSUPAG00010013049	MARCOL (ENSUPAG00010013054)	ENSUPAG00010013059	SPINK13 (ENSUPAG00010013067)	SPINK7 (ENSUPAG00010013075)	ENSUPAG00010013087	FBXO38 (ENSUPAG00010013108)	HTR4 (ENSUPAG00010013156)	ADRB2 (ENSUPAG00010013166)	SH3TC2 (ENSUPAG00010013173)	ABLIM3 (ENSUPAG00010013211) ##22	AFAP1L1 (ENSUPAG00010013342)	GRPEL2 (ENSUPAG00010013353)	PCYOX1L (ENSUPAG00010013355)	IL17B (ENSUPAG00010013375)	ENSUPAG00010013391	ARHGEF37 (ENSUPAG00010013464)	PPARGC1B (ENSUPAG00010013478)	PDE6A (ENSUPAG00010013495)	SLC26A2 (ENSUPAG00010013538)	TIGD6 (ENSUPAG00010013551)	HMGXB3 (ENSUPAG00010013558)	CSF1R (ENSUPAG00010013615)
Squirrel	MODERN SPECIES	104	DPYSL3 (ENSSTOG00000006307)	JAKMIP2 (ENSSTOG00000016056)	SPINK1 (ENSSTOG00000009814)	SCGB3A2 (ENSSTOG00000013672)	SPINK14 (ENSSTOG00000031546)	SPINK6 (ENSSTOG00000011797)	ENSSTOG00000034457	ENSSTOG00000033221	SPINK13 (ENSSTOG00000032408)	SPINK7 (ENSSTOG00000033073)	FBXO38 (ENSSTOG00000009088)	HTR4 (ENSSTOG00000007489)	ADRB2 (ENSSTOG00000010102)	ENSSTOG00000023821	SH3TC2 (ENSSTOG00000015087)	ABLIM3 (ENSSTOG00000015100) ##22	AFAP1L1 (ENSSTOG00000015118)	GRPEL2 (ENSSTOG00000015128)	PCYOX1L (ENSSTOG00000015137)	IL17B (ENSSTOG00000015142)	ENSSTOG00000022141	ARHGEF37 (ENSSTOG00000008681)	PPARGC1B (ENSSTOG00000024758)	PDE6A (ENSSTOG00000008725)	SLC26A2 (ENSSTOG00000006553)	TIGD6 (ENSSTOG00000008758)	HMGXB3 (ENSSTOG00000008763)	CSF1R (ENSSTOG00000026851)	PDGFRB (ENSSTOG00000025211)	CDX1 (ENSSTOG00000020585)	SLC6A7 (ENSSTOG00000007042)
Alpin marmot	MODERN SPECIES		SPINK1 (ENSMMMG00000018832)	SCGB3A2 (ENSMMMG00000018837)	C5orf46 (ENSMMMG00000018843)	ENSMMMG00000018849	SPINK5 (ENSMMMG00000018888)	ENSMMMG00000018911	SPINK6 (ENSMMMG00000018915)	MARCOL (ENSMMMG00000018975)	SPINK13 (ENSMMMG00000018976)	SPINK7 (ENSMMMG00000018980)	ENSMMMG00000018983	FBXO38 (ENSMMMG00000018990)	HTR4 (ENSMMMG00000019045)	ADRB2 (ENSMMMG00000019082)	SH3TC2 (ENSMMMG00000019086)	ABLIM3 (ENSMMMG00000019099) ##22	AFAP1L1 (ENSMMMG00000019132)	GRPEL2 (ENSMMMG00000019143)	PCYOX1L (ENSMMMG00000019178)	IL17B (ENSMMMG00000019186)	ENSMMMG00000019193	ENSMMMG00000019199	ARHGEF37 (ENSMMMG00000019234)	PPARGC1B (ENSMMMG00000019280)	PDE6A (ENSMMMG00000019293)	ENSMMMG00000019311	SLC26A2 (ENSMMMG00000019313)	TIGD6 (ENSMMMG00000019320)	HMGXB3 (ENSMMMG00000019323)	CSF1R (ENSMMMG00000019339)	ENSMMMG00000019351
Eurasian red squirrel	MODERN SPECIES	15	SCGB3A2 (ENSSVLG00005010732)	C5orf46 (ENSSVLG00005010669)	SPINK5 (ENSSVLG00005010081)	SPINK14 (ENSSVLG00005009913)	SPINK6 (ENSSVLG00005009864)	ENSSVLG00005009828	MARCOL (ENSSVLG00005009798)	ENSSVLG00005009773	SPINK13 (ENSSVLG00005009725)	SPINK7 (ENSSVLG00005009662)	SPINK9 (ENSSVLG00005009630)	FBXO38 (ENSSVLG00005009534)	HTR4 (ENSSVLG00005009342)	ADRB2 (ENSSVLG00005009293)	SH3TC2 (ENSSVLG00005009091)	ABLIM3 (ENSSVLG00005008990) ##22	AFAP1L1 (ENSSVLG00005008886)	GRPEL2 (ENSSVLG00005008810)	PCYOX1L (ENSSVLG00005008779)	IL17B (ENSSVLG00005008753)	CSNK1A1 (ENSSVLG00005008669)	ARHGEF37 (ENSSVLG00005008585)	PPARGC1B (ENSSVLG00005008537)	PDE6A (ENSSVLG00005008299)	ENSSVLG00005008227	ENSSVLG00005008152	HMGXB3 (ENSSVLG00005008069)	CSF1R (ENSSVLG00005007891)	PDGFRB (ENSSVLG00005007828)	CDX1 (ENSSVLG00005007785)	SLC6A7 (ENSSVLG00005007630)
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Hystricomorpha_b	ANCESTRAL SPECIES	57	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Long-tailed chinchilla	MODERN SPECIES	122	PPP2R2B (ENSCLAG00000010669)	STK32A (ENSCLAG00000009888)	DPYSL3 (ENSCLAG00000011589)	ENSCLAG00000010255	SPINK1 (ENSCLAG00000009591)	SCGB3A2 (ENSCLAG00000012325)	C5orf46 (ENSCLAG00000013364)	SPINK5 (ENSCLAG00000010015)	SPINK6 (ENSCLAG00000010382)	SPINK7 (ENSCLAG00000012052)	ENSCLAG00000011836	FBXO38 (ENSCLAG00000011431)	HTR4 (ENSCLAG00000010344)	ADRB2 (ENSCLAG00000017769)	SH3TC2 (ENSCLAG00000012078)	ABLIM3 (ENSCLAG00000015956) ##22	AFAP1L1 (ENSCLAG00000010477)	PCYOX1L (ENSCLAG00000010474)	IL17B (ENSCLAG00000012430)	ENSCLAG00000010744	ARHGEF37 (ENSCLAG00000012033)	PPARGC1B (ENSCLAG00000015452)	PDE6A (ENSCLAG00000015700)	SLC26A2 (ENSCLAG00000014413)	HMGXB3 (ENSCLAG00000010310)	CSF1R (ENSCLAG00000011617)	PDGFRB (ENSCLAG00000009688)	CDX1 (ENSCLAG00000009492)	SLC6A7 (ENSCLAG00000011923)	CAMK2A (ENSCLAG00000012010)	ARSI (ENSCLAG00000014790)
Degu	MODERN SPECIES	81	PPP2R2B (ENSODEG00000004739)	STK32A (ENSODEG00000004575)	ENSODEG00000005091	JAKMIP2 (ENSODEG00000004578)	SCGB3A2 (ENSODEG00000006603)	C5orf46 (ENSODEG00000006859)	SPINK5 (ENSODEG00000005846)	ENSODEG00000019231	SPINK6 (ENSODEG00000005901)	ENSODEG00000005177	SPINK7 (ENSODEG00000005558)	ENSODEG00000006116	FBXO38 (ENSODEG00000006237)	HTR4 (ENSODEG00000005142)	SH3TC2 (ENSODEG00000005803)	ABLIM3 (ENSODEG00000005665) ##22	AFAP1L1 (ENSODEG00000005278)	GRPEL2 (ENSODEG00000005652)	PCYOX1L (ENSODEG00000006043)	IL17B (ENSODEG00000006115)	ENSODEG00000006337	ENSODEG00000006577	ARHGEF37 (ENSODEG00000006724)	PPARGC1B (ENSODEG00000004901)	ENSODEG00000005721	SLC26A2 (ENSODEG00000006352)	HMGXB3 (ENSODEG00000006575)	CSF1R (ENSODEG00000004884)	PDGFRB (ENSODEG00000007189)	CDX1 (ENSODEG00000005756)	SLC6A7 (ENSODEG00000005582)
Guinea pig	MODERN SPECIES	6	DPYSL3 (ENSCPOG00000007983)	JAKMIP2 (ENSCPOG00000001839)	SPINK1 (ENSCPOG00000010443)	C5orf46 (ENSCPOG00000010594)	SPINK5 (ENSCPOG00000014264)	SPINK14 (ENSCPOG00000021753)	SPINK6 (ENSCPOG00000007875)	ENSCPOG00000032360	ENSCPOG00000008611	SPINK7 (ENSCPOG00000027129)	ENSCPOG00000033815	FBXO38 (ENSCPOG00000012424)	HTR4 (ENSCPOG00000012428)	ADRB2 (ENSCPOG00000012753)	SH3TC2 (ENSCPOG00000014919)	ABLIM3 (ENSCPOG00000014922) ##22	AFAP1L1 (ENSCPOG00000014925)	GRPEL2 (ENSCPOG00000031461)	PCYOX1L (ENSCPOG00000024170)	IL17B (ENSCPOG00000019682)	CSNK1A1 (ENSCPOG00000036829)	ARHGEF37 (ENSCPOG00000002907)	PPARGC1B (ENSCPOG00000001958)	PDE6A (ENSCPOG00000001962)	SLC26A2 (ENSCPOG00000001964)	HMGXB3 (ENSCPOG00000002607)	CSF1R (ENSCPOG00000024309)	PDGFRB (ENSCPOG00000005994)	ENSCPOG00000020353	SLC6A7 (ENSCPOG00000027356)	CAMK2A (ENSCPOG00000006638)
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000009289	ENSHGLG00000034049	SPINK5 (ENSHGLG00000004049)	SPINK6 (ENSHGLG00000004409)	MARCOL (ENSHGLG00000006214)	ENSHGLG00000034840	ENSHGLG00000034903	ENSHGLG00000010512	ENSHGLG00000034397	ENSHGLG00000007633	ENSHGLG00000047084	ENSHGLG00000045515	ENSHGLG00000009971	ENSHGLG00000033081	ENSHGLG00000036885	ABLIM3 (ENSHGLG00000012245) ##22	AFAP1L1 (ENSHGLG00000017322)	GRPEL2 (ENSHGLG00000041395)	PCYOX1L (ENSHGLG00000018480)	IL17B (ENSHGLG00000018467)	CSNK1A1 (ENSHGLG00000014074)	ENSHGLG00000050787	ARHGEF37 (ENSHGLG00000015980)	ENSHGLG00000050938	PPARGC1B (ENSHGLG00000005967)	ENSHGLG00000037858	PDE6A (ENSHGLG00000006466)	SLC26A2 (ENSHGLG00000008518)	HMGXB3 (ENSHGLG00000009767)	CSF1R (ENSHGLG00000003579)	PDGFRB (ENSHGLG00000003797)
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.`b	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Pika	MODERN SPECIES	3224															SH3TC2 (ENSOPRG00000004016)	ABLIM3 (ENSOPRG00000004072) ##22	AFAP1L1 (ENSOPRG00000004129)	GRPEL2 (ENSOPRG00000004163)	PCYOX1L (ENSOPRG00000004183)	IL17B (ENSOPRG00000004196)
Rabbit	MODERN SPECIES	14	ENSOCUG00000004369	SCGB3A2 (ENSOCUG00000010738)	SPINK5 (ENSOCUG00000008779)	SPINK14 (ENSOCUG00000008803)	SPINK6 (ENSOCUG00000008806)	ENSOCUG00000033590	ENSOCUG00000031087	ENSOCUG00000029696	SPINK13 (ENSOCUG00000024941)	SPINK7 (ENSOCUG00000037791)	SPINK9 (ENSOCUG00000029351)	FBXO38 (ENSOCUG00000017291)	HTR4 (ENSOCUG00000017309)	ADRB2 (ENSOCUG00000016088)	SH3TC2 (ENSOCUG00000025096)	ABLIM3 (ENSOCUG00000016093) ##22	AFAP1L1 (ENSOCUG00000016114)	ENSOCUG00000016138	PCYOX1L (ENSOCUG00000008337)	IL17B (ENSOCUG00000016145)	CSNK1A1 (ENSOCUG00000006669)	ENSOCUG00000036543	ARHGEF37 (ENSOCUG00000006829)	PPARGC1B (ENSOCUG00000013833)	PDE6A (ENSOCUG00000013850)	SLC26A2 (ENSOCUG00000013871)	HMGXB3 (ENSOCUG00000007500)	CSF1R (ENSOCUG00000021056)	PDGFRB (ENSOCUG00000001725)	CDX1 (ENSOCUG00000012479)	SLC6A7 (ENSOCUG00000006404)
Tree shrew	MODERN SPECIES	3630															SH3TC2 (ENSTBEG00000016757)	ABLIM3 (ENSTBEG00000017039) ##22	AFAP1L1 (ENSTBEG00000009709)	GRPEL2 (ENSTBEG00000010105)
Primates	ANCESTRAL SPECIES	8	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Lemuriformes	ANCESTRAL SPECIES	21	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Lemuriformes_a	ANCESTRAL SPECIES	13	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Greater bamboo lemur	MODERN SPECIES	50									SPINK13 (ENSPSMG00000024551)	SPINK7 (ENSPSMG00000024547)	SPINK9 (ENSPSMG00000024545)	FBXO38 (ENSPSMG00000024539)	HTR4 (ENSPSMG00000024509)	ADRB2 (ENSPSMG00000024452)	SH3TC2 (ENSPSMG00000024445)	ABLIM3 (ENSPSMG00000024414) ##22	AFAP1L1 (ENSPSMG00000024305)	GRPEL2 (ENSPSMG00000024280)	PCYOX1L (ENSPSMG00000024261)	IL17B (ENSPSMG00000024251)	ENSPSMG00000024239	CSNK1A1 (ENSPSMG00000024208)	ARHGEF37 (ENSPSMG00000024142)	PPARGC1B (ENSPSMG00000024131)	ENSPSMG00000024111	PDE6A (ENSPSMG00000024104)	SLC26A2 (ENSPSMG00000024091)	TIGD6 (ENSPSMG00000024090)	HMGXB3 (ENSPSMG00000024071)	CSF1R (ENSPSMG00000024029)	PDGFRB (ENSPSMG00000023975)
Coquerels sifaka	MODERN SPECIES	738	PPP2R2B (ENSPCOG00000012944)	STK32A (ENSPCOG00000003861)	DPYSL3 (ENSPCOG00000021742)	JAKMIP2 (ENSPCOG00000022201)	SPINK1 (ENSPCOG00000019952)	SCGB3A2 (ENSPCOG00000027360)	C5orf46 (ENSPCOG00000005759)	ENSPCOG00000020885	SPINK14 (ENSPCOG00000015724)	SPINK6 (ENSPCOG00000012126)	MARCOL (ENSPCOG00000015672)	SPINK7 (ENSPCOG00000017440)	FBXO38 (ENSPCOG00000019795)	HTR4 (ENSPCOG00000026629)	SH3TC2 (ENSPCOG00000016330)	ABLIM3 (ENSPCOG00000021938) ##22	AFAP1L1 (ENSPCOG00000020332)	GRPEL2 (ENSPCOG00000027577)	PCYOX1L (ENSPCOG00000027029)	IL17B (ENSPCOG00000018305)	ENSPCOG00000027113	ENSPCOG00000017255	ARHGEF37 (ENSPCOG00000018318)	PPARGC1B (ENSPCOG00000024059)	PDE6A (ENSPCOG00000028318)	SLC26A2 (ENSPCOG00000021285)	HMGXB3 (ENSPCOG00000023148)	CSF1R (ENSPCOG00000025616)	PDGFRB (ENSPCOG00000028113)	CDX1 (ENSPCOG00000018558)	SLC6A7 (ENSPCOG00000019876)
Mouse lemur	MODERN SPECIES	15	SLC36A3 (ENSMICG00000000691)	GM2A (ENSMICG00000031216)	CCDC69 (ENSMICG00000041463)	ANXA6 (ENSMICG00000000675)	TNIP1 (ENSMICG00000000664)	GPX3 (ENSMICG00000000660)	ZNF300 (ENSMICG00000037632)	ENSMICG00000046828	ENSMICG00000030041	SPINK7 (ENSMICG00000002552)	SPINK9 (ENSMICG00000046265)	FBXO38 (ENSMICG00000002556)	HTR4 (ENSMICG00000002566)	ADRB2 (ENSMICG00000002569)	SH3TC2 (ENSMICG00000002571)	ABLIM3 (ENSMICG00000002582) ##22	AFAP1L1 (ENSMICG00000002598)	GRPEL2 (ENSMICG00000042083)	PCYOX1L (ENSMICG00000028126)	IL17B (ENSMICG00000002611)	CSNK1A1 (ENSMICG00000027056)	ENSMICG00000027812	ARHGEF37 (ENSMICG00000002691)	PPARGC1B (ENSMICG00000002702)	PDE6A (ENSMICG00000002710)	SLC26A2 (ENSMICG00000028691)	HMGXB3 (ENSMICG00000002740)	CSF1R (ENSMICG00000002770)	PDGFRB (ENSMICG00000002797)	CDX1 (ENSMICG00000033499)	SLC6A7 (ENSMICG00000002824)
Bushbaby	MODERN SPECIES	118	TCERG1 (ENSOGAG00000025674)	GPR151 (ENSOGAG00000009575)	PPP2R2B (ENSOGAG00000010873)	STK32A (ENSOGAG00000013862)	DPYSL3 (ENSOGAG00000013863)	ENSOGAG00000034689	JAKMIP2 (ENSOGAG00000007164)	SCGB3A2 (ENSOGAG00000002793)	C5orf46 (ENSOGAG00000016090)	SPINK5 (ENSOGAG00000013274)	SPINK7 (ENSOGAG00000001393)	HTR4 (ENSOGAG00000001398)	FBXO38 (ENSOGAG00000001396)	ADRB2 (ENSOGAG00000012705)	SH3TC2 (ENSOGAG00000013586)	ABLIM3 (ENSOGAG00000014316) ##22	AFAP1L1 (ENSOGAG00000014322)	GRPEL2 (ENSOGAG00000014326)	PCYOX1L (ENSOGAG00000014328)	IL17B (ENSOGAG00000014331)	ENSOGAG00000003253	ARHGEF37 (ENSOGAG00000003254)	PPARGC1B (ENSOGAG00000015983)	PDE6A (ENSOGAG00000015989)	SLC26A2 (ENSOGAG00000015997)	HMGXB3 (ENSOGAG00000004593)	CSF1R (ENSOGAG00000004598)	PDGFRB (ENSOGAG00000004602)	CDX1 (ENSOGAG00000025120)	SLC6A7 (ENSOGAG00000004607)	ENSOGAG00000024303
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Tarsier	MODERN SPECIES	5552															SH3TC2 (ENSTSYG00000009307)	ABLIM3 (ENSTSYG00000005662) ##22	AFAP1L1 (ENSTSYG00000033896)	GRPEL2 (ENSTSYG00000029446)	PCYOX1L (ENSTSYG00000036158)	IL17B (ENSTSYG00000031445)
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Macaca	ANCESTRAL SPECIES	7	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00940000158302.d.a	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT01030000239693	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.b.c.a.a.b	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Rhesus	MODERN SPECIES	16	JAKMIP2 (ENSMMUG00000013394)	SPINK1 (ENSMMUG00000017227)	SCGB3A2 (ENSMMUG00000017228)	C6H5orf46 (ENSMMUG00000064447)	SPINK5 (ENSMMUG00000017900)	SPINK14 (ENSMMUG00000001198)	SPINK6 (ENSMMUG00000057086)	ENSMMUG00000050453	SPINK13 (ENSMMUG00000061341)	SPINK7 (ENSMMUG00000016907)	SPINK9 (ENSMMUG00000029782)	FBXO38 (ENSMMUG00000016908)	HTR4 (ENSMMUG00000016913)	ADRB2 (ENSMMUG00000002214)	SH3TC2 (ENSMMUG00000019820)	ABLIM3 (ENSMMUG00000021657) ##22	AFAP1L1 (ENSMMUG00000021660)	GRPEL2 (ENSMMUG00000059111)	PCYOX1L (ENSMMUG00000021663)	IL17B (ENSMMUG00000021666)	ENSMMUG00000062594	ENSMMUG00000063983	CSNK1A1 (ENSMMUG00000001758)	ENSMMUG00000053973	ARHGEF37 (ENSMMUG00000017714)	PPARGC1B (ENSMMUG00000004749)	PDE6A (ENSMMUG00000004752)	SLC26A2 (ENSMMUG00000029776)	TIGD6 (ENSMMUG00000011553)	HMGXB3 (ENSMMUG00000011554)	CSF1R (ENSMMUG00000011556)
Pig-tailed macaque	MODERN SPECIES	383	JAKMIP2 (ENSMNEG00000043734)	SPINK1 (ENSMNEG00000038677)	SCGB3A2 (ENSMNEG00000036799)	C5orf46 (ENSMNEG00000025136)	SPINK5 (ENSMNEG00000034525)	SPINK14 (ENSMNEG00000031464)	SPINK6 (ENSMNEG00000040646)	MARCOL (ENSMNEG00000033533)	SPINK13 (ENSMNEG00000028624)	SPINK7 (ENSMNEG00000041021)	SPINK9 (ENSMNEG00000034418)	FBXO38 (ENSMNEG00000033470)	HTR4 (ENSMNEG00000035428)	ADRB2 (ENSMNEG00000002108)	SH3TC2 (ENSMNEG00000018695)	ABLIM3 (ENSMNEG00000043657) ##22	AFAP1L1 (ENSMNEG00000022071)	ENSMNEG00000040561	PCYOX1L (ENSMNEG00000034433)	IL17B (ENSMNEG00000003168)	ENSMNEG00000036052	CSNK1A1 (ENSMNEG00000036153)	ARHGEF37 (ENSMNEG00000035164)	PPARGC1B (ENSMNEG00000034121)	PDE6A (ENSMNEG00000043885)	SLC26A2 (ENSMNEG00000028522)	ENSMNEG00000045322	TIGD6 (ENSMNEG00000028353)	HMGXB3 (ENSMNEG00000035203)	CSF1R (ENSMNEG00000041139)	ENSMNEG00000031925
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00910000147883
Olive baboon	MODERN SPECIES	15	DPYSL3 (ENSPANG00000013090)	JAKMIP2 (ENSPANG00000001092)	ENSPANG00000038625	SPINK1 (ENSPANG00000012365)	C5orf46 (ENSPANG00000019122)	SPINK5 (ENSPANG00000007092)	ENSPANG00000045510	SPINK14 (ENSPANG00000024863)	SPINK6 (ENSPANG00000007464)	SPINK7 (ENSPANG00000012115)	SPINK9 (ENSPANG00000008614)	FBXO38 (ENSPANG00000026422)	HTR4 (ENSPANG00000017118)	ADRB2 (ENSPANG00000025700)	SH3TC2 (ENSPANG00000012855)	ABLIM3 (ENSPANG00000012205) ##22	AFAP1L1 (ENSPANG00000024862)	GRPEL2 (ENSPANG00000013468)	PCYOX1L (ENSPANG00000005731)	IL17B (ENSPANG00000010657)	CSNK1A1 (ENSPANG00000010406)	ARHGEF37 (ENSPANG00000013089)	PPARGC1B (ENSPANG00000009512)	PDE6A (ENSPANG00000019517)	SLC26A2 (ENSPANG00000008875)	TIGD6 (ENSPANG00000023729)	HMGXB3 (ENSPANG00000023318)	CSF1R (ENSPANG00000018729)	PDGFRB (ENSPANG00000023735)	CDX1 (ENSPANG00000050127)	SLC6A7 (ENSPANG00000006208)
Cercopithecinae_d	ANCESTRAL SPECIES	90	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00390000011010.b.mb	ENSGT00940000157138
Drill	MODERN SPECIES	921									SPINK13 (ENSMLEG00000041668)	SPINK7 (ENSMLEG00000011759)	SPINK9 (ENSMLEG00000043753)	FBXO38 (ENSMLEG00000043874)	HTR4 (ENSMLEG00000032925)	ADRB2 (ENSMLEG00000013549)	SH3TC2 (ENSMLEG00000039672)	ABLIM3 (ENSMLEG00000035568) ##22	AFAP1L1 (ENSMLEG00000036743)	GRPEL2 (ENSMLEG00000027712)	PCYOX1L (ENSMLEG00000029797)	IL17B (ENSMLEG00000029463)	CSNK1A1 (ENSMLEG00000032054)	ARHGEF37 (ENSMLEG00000008241)	PPARGC1B (ENSMLEG00000040973)	PDE6A (ENSMLEG00000035530)	SLC26A2 (ENSMLEG00000026088)	ENSMLEG00000036295	TIGD6 (ENSMLEG00000000354)	HMGXB3 (ENSMLEG00000043365)	CSF1R (ENSMLEG00000038866)	ENSMLEG00000031129	PDGFRB (ENSMLEG00000019760)
Sooty mangabey	MODERN SPECIES	150	JAKMIP2 (ENSCATG00000043931)	SPINK1 (ENSCATG00000041459)	SCGB3A2 (ENSCATG00000044032)	C5orf46 (ENSCATG00000031485)	SPINK5 (ENSCATG00000029075)	SPINK14 (ENSCATG00000042118)	SPINK6 (ENSCATG00000030265)	MARCOL (ENSCATG00000041443)	SPINK13 (ENSCATG00000033181)	SPINK7 (ENSCATG00000031455)	SPINK9 (ENSCATG00000036099)	FBXO38 (ENSCATG00000008057)	HTR4 (ENSCATG00000035093)	ADRB2 (ENSCATG00000023186)	SH3TC2 (ENSCATG00000036976)	ABLIM3 (ENSCATG00000025886) ##22	AFAP1L1 (ENSCATG00000029104)	ENSCATG00000040029	PCYOX1L (ENSCATG00000032100)	IL17B (ENSCATG00000031837)	CSNK1A1 (ENSCATG00000034093)	ARHGEF37 (ENSCATG00000044070)	PPARGC1B (ENSCATG00000030402)	PDE6A (ENSCATG00000022091)	SLC26A2 (ENSCATG00000016803)	ENSCATG00000030068	TIGD6 (ENSCATG00000017990)	HMGXB3 (ENSCATG00000038002)	CSF1R (ENSCATG00000007348)	ENSCATG00000045226	PDGFRB (ENSCATG00000044827)
Vervet Monkey	MODERN SPECIES	15	DPYSL3 (ENSCSAG00000012209)	JAKMIP2 (ENSCSAG00000012155)	SPINK1 (ENSCSAG00000012141)	SCGB3A2 (ENSCSAG00000012129)	C5orf46 (ENSCSAG00000012118)	SPINK5 (ENSCSAG00000012050)	SPINK14 (ENSCSAG00000011930)	SPINK6 (ENSCSAG00000011920)	SPINK13 (ENSCSAG00000011916)	SPINK7 (ENSCSAG00000011911)	SPINK9 (ENSCSAG00000011905)	FBXO38 (ENSCSAG00000011896)	HTR4 (ENSCSAG00000011878)	ADRB2 (ENSCSAG00000019717)	ENSCSAG00000011867	ABLIM3 (ENSCSAG00000011859) ##22	AFAP1L1 (ENSCSAG00000011843)	ENSCSAG00000011834	PCYOX1L (ENSCSAG00000011829)	IL17B (ENSCSAG00000011821)	CSNK1A1 (ENSCSAG00000011814)	ARHGEF37 (ENSCSAG00000011804)	PPARGC1B (ENSCSAG00000011792)	PDE6A (ENSCSAG00000011757)	SLC26A2 (ENSCSAG00000011710)	TIGD6 (ENSCSAG00000019718)	HMGXB3 (ENSCSAG00000011700)	CSF1R (ENSCSAG00000011690)	PDGFRB (ENSCSAG00000011671)	CDX1 (ENSCSAG00000011659)	SLC6A7 (ENSCSAG00000011636)
Rhinopithecus	ANCESTRAL SPECIES	53						ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330.b	ENSGT00940000161330.a	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506
Black snub-nosed monkey	MODERN SPECIES	531							SPINK6 (ENSRBIG00000037531)	MARCOL (ENSRBIG00000044146)	SPINK13 (ENSRBIG00000034804)	SPINK7 (ENSRBIG00000042503)	SPINK9 (ENSRBIG00000033013)	FBXO38 (ENSRBIG00000034304)	HTR4 (ENSRBIG00000042388)	ADRB2 (ENSRBIG00000044505)	SH3TC2 (ENSRBIG00000032968)	ABLIM3 (ENSRBIG00000027319) ##22	AFAP1L1 (ENSRBIG00000024173)	GRPEL2 (ENSRBIG00000034866)	PCYOX1L (ENSRBIG00000035607)	IL17B (ENSRBIG00000037794)	ENSRBIG00000015114	ENSRBIG00000043370	CSNK1A1 (ENSRBIG00000032845)	ARHGEF37 (ENSRBIG00000005435)	PPARGC1B (ENSRBIG00000036724)	PDE6A (ENSRBIG00000038805)	SLC26A2 (ENSRBIG00000016061)	ENSRBIG00000029871	TIGD6 (ENSRBIG00000023892)	HMGXB3 (ENSRBIG00000040563)	CSF1R (ENSRBIG00000031321)
Golden snub-nosed monkey	MODERN SPECIES	2594												FBXO38 (ENSRROG00000028798)	HTR4 (ENSRROG00000041400)	ADRB2 (ENSRROG00000023775)	SH3TC2 (ENSRROG00000035976)	ABLIM3 (ENSRROG00000044842) ##22	AFAP1L1 (ENSRROG00000035083)	GRPEL2 (ENSRROG00000030768)	PCYOX1L (ENSRROG00000045676)	IL17B (ENSRROG00000020909)	ENSRROG00000040365	ENSRROG00000033814	CSNK1A1 (ENSRROG00000032970)	ENSRROG00000031607	ARHGEF37 (ENSRROG00000027184)	PPARGC1B (ENSRROG00000029594)	ENSRROG00000041184
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT00390000009776.j.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT00390000009776.j.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506
Pan	ANCESTRAL SPECIES	10	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT00390000009776.j.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00860000136176	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506
Bonobo	MODERN SPECIES	18	STK32A (ENSPPAG00000028058)	DPYSL3 (ENSPPAG00000035370)	JAKMIP2 (ENSPPAG00000041169)	SCGB3A2 (ENSPPAG00000036296)	C5orf46 (ENSPPAG00000041880)	SPINK5 (ENSPPAG00000040944)	SPINK14 (ENSPPAG00000043145)	SPINK6 (ENSPPAG00000037222)	SPINK13 (ENSPPAG00000026789)	SPINK7 (ENSPPAG00000037231)	ENSPPAG00000039891	FBXO38 (ENSPPAG00000016960)	HTR4 (ENSPPAG00000040790)	ADRB2 (ENSPPAG00000036592)	SH3TC2 (ENSPPAG00000021974)	ABLIM3 (ENSPPAG00000029456) ##22	AFAP1L1 (ENSPPAG00000035426)	GRPEL2 (ENSPPAG00000032219)	PCYOX1L (ENSPPAG00000038525)	IL17B (ENSPPAG00000034378)	CSNK1A1 (ENSPPAG00000041093)	ENSPPAG00000029858	ARHGEF37 (ENSPPAG00000032767)	PPARGC1B (ENSPPAG00000035226)	PDE6A (ENSPPAG00000038123)	ENSPPAG00000026689	SLC26A2 (ENSPPAG00000038310)	ENSPPAG00000012250	TIGD6 (ENSPPAG00000008619)	HMGXB3 (ENSPPAG00000008815)	CSF1R (ENSPPAG00000041729)
Chimpanzee	MODERN SPECIES	18	JAKMIP2 (ENSPTRG00000017381)	SPINK1 (ENSPTRG00000017382)	SCGB3A2 (ENSPTRG00000017383)	C5H5orf46 (ENSPTRG00000017384)	SPINK5 (ENSPTRG00000043281)	SPINK14 (ENSPTRG00000022988)	SPINK6 (ENSPTRG00000017386)	MARCOL (ENSPTRG00000051181)	SPINK13 (ENSPTRG00000034142)	SPINK7 (ENSPTRG00000017387)	SPINK9 (ENSPTRG00000028533)	FBXO38 (ENSPTRG00000017388)	HTR4 (ENSPTRG00000017389)	ADRB2 (ENSPTRG00000017391)	SH3TC2 (ENSPTRG00000017392)	ABLIM3 (ENSPTRG00000017393) ##22	AFAP1L1 (ENSPTRG00000017394)	GRPEL2 (ENSPTRG00000017396)	PCYOX1L (ENSPTRG00000017397)	IL17B (ENSPTRG00000017399)	CSNK1A1 (ENSPTRG00000017401)	ARHGEF37 (ENSPTRG00000017402)	PPARGC1B (ENSPTRG00000017403)	PDE6A (ENSPTRG00000017404)	ENSPTRG00000051114	SLC26A2 (ENSPTRG00000043485)	ENSPTRG00000048680	TIGD6 (ENSPTRG00000049458)	HMGXB3 (ENSPTRG00000017408)	CSF1R (ENSPTRG00000017409)	PDGFRB (ENSPTRG00000044533)
Human	MODERN SPECIES	17	JAKMIP2 (ENSG00000176049)	SPINK1 (ENSG00000164266)	SCGB3A2 (ENSG00000164265)	C5orf46 (ENSG00000178776)	SPINK5 (ENSG00000133710)	SPINK14 (ENSG00000196800)	SPINK6 (ENSG00000178172)	MARCOL (ENSG00000248109)	SPINK13 (ENSG00000214510)	SPINK7 (ENSG00000145879)	SPINK9 (ENSG00000204909)	FBXO38 (ENSG00000145868)	HTR4 (ENSG00000164270)	ADRB2 (ENSG00000169252)	SH3TC2 (ENSG00000169247)	ABLIM3 (ENSG00000173210) ##22	AFAP1L1 (ENSG00000157510)	GRPEL2 (ENSG00000164284)	PCYOX1L (ENSG00000145882)	IL17B (ENSG00000127743)	CSNK1A1 (ENSG00000113712)	ARHGEF37 (ENSG00000183111)	PPARGC1B (ENSG00000155846)	PDE6A (ENSG00000132915)	SLC26A2 (ENSG00000155850)	TIGD6 (ENSG00000164296)	HMGXB3 (ENSG00000113716)	CSF1R (ENSG00000182578)	PDGFRB (ENSG00000113721)	CDX1 (ENSG00000113722)	SLC6A7 (ENSG00000011083)
Gorilla	MODERN SPECIES	18	JAKMIP2 (ENSGGOG00000003420)	SPINK1 (ENSGGOG00000008412)	SCGB3A2 (ENSGGOG00000026928)	C5orf46 (ENSGGOG00000010458)	SPINK5 (ENSGGOG00000024156)	SPINK14 (ENSGGOG00000012747)	SPINK6 (ENSGGOG00000000159)	MARCOL (ENSGGOG00000041755)	SPINK13 (ENSGGOG00000025175)	SPINK7 (ENSGGOG00000001299)	ENSGGOG00000023945	FBXO38 (ENSGGOG00000004687)	HTR4 (ENSGGOG00000016400)	ADRB2 (ENSGGOG00000005445)	SH3TC2 (ENSGGOG00000006958)	ABLIM3 (ENSGGOG00000005384) ##22	AFAP1L1 (ENSGGOG00000005401)	GRPEL2 (ENSGGOG00000005410)	PCYOX1L (ENSGGOG00000005413)	IL17B (ENSGGOG00000005421)	CSNK1A1 (ENSGGOG00000013926)	ARHGEF37 (ENSGGOG00000001871)	PPARGC1B (ENSGGOG00000009505)	ENSGGOG00000010699	ENSGGOG00000041643	SLC26A2 (ENSGGOG00000000528)	ENSGGOG00000041991	TIGD6 (ENSGGOG00000008920)	HMGXB3 (ENSGGOG00000008921)	CSF1R (ENSGGOG00000008936)	ENSGGOG00000015098
Orangutan	MODERN SPECIES	18	JAKMIP2 (ENSPPYG00000015917)	SPINK1 (ENSPPYG00000041440)	SCGB3A2 (ENSPPYG00000015919)	C5orf46 (ENSPPYG00000015920)	SPINK5 (ENSPPYG00000015921)	SPINK14 (ENSPPYG00000015922)	SPINK6 (ENSPPYG00000015923)	ENSPPYG00000036659	SPINK13 (ENSPPYG00000015924)	SPINK7 (ENSPPYG00000015925)	ENSPPYG00000015926	FBXO38 (ENSPPYG00000015927)	HTR4 (ENSPPYG00000015928)	ADRB2 (ENSPPYG00000015929)	SH3TC2 (ENSPPYG00000015930)	ABLIM3 (ENSPPYG00000015931) ##22	AFAP1L1 (ENSPPYG00000015932)	GRPEL2 (ENSPPYG00000015933)	PCYOX1L (ENSPPYG00000015934)	IL17B (ENSPPYG00000015935)	ENSPPYG00000036819	CSNK1A1 (ENSPPYG00000015936)	ARHGEF37 (ENSPPYG00000015937)	PPARGC1B (ENSPPYG00000015938)	PDE6A (ENSPPYG00000015939)	SLC26A2 (ENSPPYG00000038636)	HMGXB3 (ENSPPYG00000015941)	CSF1R (ENSPPYG00000015942)	PDGFRB (ENSPPYG00000015943)	CDX1 (ENSPPYG00000015944)	SLC6A7 (ENSPPYG00000015945)
Gibbon	MODERN SPECIES	11	STK32A (ENSNLEG00000009958)	DPYSL3 (ENSNLEG00000009966)	JAKMIP2 (ENSNLEG00000009982)	SPINK1 (ENSNLEG00000009998)	SCGB3A2 (ENSNLEG00000010000)	C5orf46 (ENSNLEG00000010005)	SPINK5 (ENSNLEG00000010008)	SPINK6 (ENSNLEG00000010064)	MARCOL (ENSNLEG00000031931)	ENSNLEG00000010067	SPINK7 (ENSNLEG00000010071)	ENSNLEG00000010076	FBXO38 (ENSNLEG00000010079)	HTR4 (ENSNLEG00000010112)	SH3TC2 (ENSNLEG00000010121)	ABLIM3 (ENSNLEG00000010135) ##22	AFAP1L1 (ENSNLEG00000010143)	GRPEL2 (ENSNLEG00000029202)	PCYOX1L (ENSNLEG00000010166)	IL17B (ENSNLEG00000035704)	ENSNLEG00000010172	CSNK1A1 (ENSNLEG00000027267)	ARHGEF37 (ENSNLEG00000010188)	PPARGC1B (ENSNLEG00000010193)	ENSNLEG00000035864	PDE6A (ENSNLEG00000010198)	SLC26A2 (ENSNLEG00000010209)	ENSNLEG00000028618	TIGD6 (ENSNLEG00000010212)	HMGXB3 (ENSNLEG00000010213)	CSF1R (ENSNLEG00000010225)
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Mas night monkey	MODERN SPECIES	966	SCGB3A2 (ENSANAG00000023468)	C5orf46 (ENSANAG00000037273)	SPINK5 (ENSANAG00000034759)	SPINK14 (ENSANAG00000029562)	SPINK6 (ENSANAG00000037160)	MARCOL (ENSANAG00000026951)	SPINK13 (ENSANAG00000024157)	SPINK7 (ENSANAG00000024041)	ENSANAG00000037965	SPINK9 (ENSANAG00000017436)	FBXO38 (ENSANAG00000025070)	HTR4 (ENSANAG00000016946)	ADRB2 (ENSANAG00000025525)	SH3TC2 (ENSANAG00000019462)	ENSANAG00000026413	ABLIM3 (ENSANAG00000036878) ##22	AFAP1L1 (ENSANAG00000024427)	GRPEL2 (ENSANAG00000030295)	PCYOX1L (ENSANAG00000020560)	IL17B (ENSANAG00000020790)	CSNK1A1 (ENSANAG00000021098)	ARHGEF37 (ENSANAG00000025504)	PPARGC1B (ENSANAG00000021830)	PDE6A (ENSANAG00000035251)	SLC26A2 (ENSANAG00000024045)	TIGD6 (ENSANAG00000023656)	HMGXB3 (ENSANAG00000021091)	CSF1R (ENSANAG00000028025)	ENSANAG00000027390	PDGFRB (ENSANAG00000036549)	CDX1 (ENSANAG00000022954)
Cebidae	ANCESTRAL SPECIES	6	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Cebidae_a	ANCESTRAL SPECIES	83	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700.kb.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Bolivian squirrel monkey	MODERN SPECIES	103	DPYSL3 (ENSSBOG00000026919)	JAKMIP2 (ENSSBOG00000029971)	SPINK1 (ENSSBOG00000011269)	SCGB3A2 (ENSSBOG00000033234)	C5orf46 (ENSSBOG00000035041)	SPINK5 (ENSSBOG00000021923)	SPINK14 (ENSSBOG00000021006)	SPINK6 (ENSSBOG00000030299)	MARCOL (ENSSBOG00000032171)	SPINK7 (ENSSBOG00000034263)	SPINK9 (ENSSBOG00000021252)	FBXO38 (ENSSBOG00000029557)	HTR4 (ENSSBOG00000029448)	ADRB2 (ENSSBOG00000020834)	SH3TC2 (ENSSBOG00000019392)	ABLIM3 (ENSSBOG00000031658) ##22	AFAP1L1 (ENSSBOG00000031006)	GRPEL2 (ENSSBOG00000030736)	PCYOX1L (ENSSBOG00000029897)	IL17B (ENSSBOG00000027325)	CSNK1A1 (ENSSBOG00000025117)	ENSSBOG00000026169	ARHGEF37 (ENSSBOG00000028328)	PPARGC1B (ENSSBOG00000028738)	PDE6A (ENSSBOG00000021337)	SLC26A2 (ENSSBOG00000031044)	TIGD6 (ENSSBOG00000032889)	HMGXB3 (ENSSBOG00000020648)	CSF1R (ENSSBOG00000023982)	PDGFRB (ENSSBOG00000025037)	ENSSBOG00000030617
Capuchin	MODERN SPECIES	71			C5orf46 (ENSCCAG00000036396)	SPINK5 (ENSCCAG00000032731)	SPINK14 (ENSCCAG00000035413)	SPINK6 (ENSCCAG00000026645)	MARCOL (ENSCCAG00000030766)	ENSCCAG00000036330	ENSCCAG00000031419	SPINK7 (ENSCCAG00000024710)	SPINK9 (ENSCCAG00000022106)	FBXO38 (ENSCCAG00000033302)	HTR4 (ENSCCAG00000033464)	ADRB2 (ENSCCAG00000027966)	SH3TC2 (ENSCCAG00000037468)	ABLIM3 (ENSCCAG00000033452) ##22	AFAP1L1 (ENSCCAG00000037827)	GRPEL2 (ENSCCAG00000030877)	PCYOX1L (ENSCCAG00000031959)	IL17B (ENSCCAG00000037576)	CSNK1A1 (ENSCCAG00000036479)	ARHGEF37 (ENSCCAG00000035607)	PPARGC1B (ENSCCAG00000026909)	PDE6A (ENSCCAG00000037978)	SLC26A2 (ENSCCAG00000020161)	ENSCCAG00000030622	HMGXB3 (ENSCCAG00000023989)	CSF1R (ENSCCAG00000033803)	ENSCCAG00000026641	PDGFRB (ENSCCAG00000031575)	CDX1 (ENSCCAG00000029914)
Marmoset	MODERN SPECIES	11	ENSCJAG00000083109	SPINK1 (ENSCJAG00000021274)	SCGB3A2 (ENSCJAG00000021268)	C5orf46 (ENSCJAG00000082790)	SPINK5 (ENSCJAG00000021245)	ENSCJAG00000073560	SPINK6 (ENSCJAG00000048610)	MARCOL (ENSCJAG00000043278)	ENSCJAG00000044950	SPINK7 (ENSCJAG00000021238)	SPINK9 (ENSCJAG00000021232)	FBXO38 (ENSCJAG00000021201)	HTR4 (ENSCJAG00000021192)	ADRB2 (ENSCJAG00000046663)	SH3TC2 (ENSCJAG00000021183)	ABLIM3 (ENSCJAG00000021152) ##22	ENSCJAG00000069995	AFAP1L1 (ENSCJAG00000021140)	PCYOX1L (ENSCJAG00000021137)	IL17B (ENSCJAG00000021136)	ENSCJAG00000073579	CSNK1A1 (ENSCJAG00000021121)	ARHGEF37 (ENSCJAG00000021116)	ENSCJAG00000073211	PPARGC1B (ENSCJAG00000021113)	PDE6A (ENSCJAG00000021102)	ENSCJAG00000076698	SLC26A2 (ENSCJAG00000021099)	HMGXB3 (ENSCJAG00000021088)	CSF1R (ENSCJAG00000021077)	PDGFRB (ENSCJAG00000021070)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Equus	ANCESTRAL SPECIES	6	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308.h	ENSGT00940000165308.g.a.a	ENSGT00940000165308.g.b.a.b	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Donkey	MODERN SPECIES	29	RPS23 (ENSEASG00005004140)	ENSEASG00005004142	TMEM167A (ENSEASG00005035583)	XRCC4 (ENSEASG00005004152)	VCAN (ENSEASG00005004200)	HAPLN1 (ENSEASG00005004559)	ENSEASG00005004576	ENSEASG00005024880	ENSEASG00005027718	SPINK7 (ENSEASG00005031369)	SPINK9 (ENSEASG00005026461)	FBXO38 (ENSEASG00005002952)	HTR4 (ENSEASG00005002941)	ADRB2 (ENSEASG00005035523)	SH3TC2 (ENSEASG00005002925)	ABLIM3 (ENSEASG00005002886) ##22	AFAP1L1 (ENSEASG00005002876)	GRPEL2 (ENSEASG00005029186)	PCYOX1L (ENSEASG00005002869)	IL17B (ENSEASG00005034663)	CSNK1A1 (ENSEASG00005002855)	ARHGEF37 (ENSEASG00005002843)	PPARGC1B (ENSEASG00005002826)	PDE6A (ENSEASG00005002786)	SLC26A2 (ENSEASG00005002777)	TIGD6 (ENSEASG00005034038)	HMGXB3 (ENSEASG00005002772)	CSF1R (ENSEASG00005002767)	PDGFRB (ENSEASG00005002763)	CDX1 (ENSEASG00005002759)	SLC6A7 (ENSEASG00005002754)
Horse	MODERN SPECIES	5	ENSECAG00000032400	ENSECAG00000051404	ENSECAG00000036997	ENSECAG00000030251	ENSECAG00000044153	ENSECAG00000039703	ENSECAG00000043180	ENSECAG00000037084	ENSECAG00000028172	SPINK7 (ENSECAG00000034028)	SPINK9 (ENSECAG00000036703)	FBXO38 (ENSECAG00000016193)	HTR4 (ENSECAG00000013365)	ADRB2 (ENSECAG00000004810)	SH3TC2 (ENSECAG00000009311)	ABLIM3 (ENSECAG00000016129) ##22	AFAP1L1 (ENSECAG00000010738)	GRPEL2 (ENSECAG00000009449)	PCYOX1L (ENSECAG00000007083)	IL17B (ENSECAG00000006456)	CSNK1A1 (ENSECAG00000004882)	ARHGEF37 (ENSECAG00000022738)	PPARGC1B (ENSECAG00000019769)	PDE6A (ENSECAG00000024028)	SLC26A2 (ENSECAG00000023363)	TIGD6 (ENSECAG00000004664)	HMGXB3 (ENSECAG00000015743)	CSF1R (ENSECAG00000000860)	PDGFRB (ENSECAG00000024793)	CDX1 (ENSECAG00000024772)	SLC6A7 (ENSECAG00000011225)
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT01080000259604	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Megabat	MODERN SPECIES	2359																ABLIM3 (ENSPVAG00000010469) ##22	AFAP1L1 (ENSPVAG00000010473)	PCYOX1L (ENSPVAG00000010474)	IL17B (ENSPVAG00000010475)
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT01080000259604	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Greater horseshoe bat	MODERN SPECIES	16	SCGB3A2 (ENSRFEG00010010085)	C5orf46 (ENSRFEG00010010119)	SPINK5 (ENSRFEG00010010219)	ENSRFEG00010010563	SPINK14 (ENSRFEG00010010787)	SPINK6 (ENSRFEG00010010858)	MARCOL (ENSRFEG00010010923)	ENSRFEG00010010974	SPINK13 (ENSRFEG00010011013)	SPINK7 (ENSRFEG00010011127)	ENSRFEG00010011193	FBXO38 (ENSRFEG00010011244)	HTR4 (ENSRFEG00010011375)	ADRB2 (ENSRFEG00010011504)	SH3TC2 (ENSRFEG00010011549)	ABLIM3 (ENSRFEG00010012097) ##22	AFAP1L1 (ENSRFEG00010012253)	GRPEL2 (ENSRFEG00010012346)	ENSRFEG00010012425	IL17B (ENSRFEG00010012496)	CSNK1A1 (ENSRFEG00010012571)	ARHGEF37 (ENSRFEG00010012691)	PPARGC1B (ENSRFEG00010012783)	PDE6A (ENSRFEG00010012866)	SLC26A2 (ENSRFEG00010013454)	HMGXB3 (ENSRFEG00010013671)	CSF1R (ENSRFEG00010013869)	PDGFRB (ENSRFEG00010013950)	CDX1 (ENSRFEG00010014033)	SLC6A7 (ENSRFEG00010014080)	CAMK2A (ENSRFEG00010014294)
Microbat	MODERN SPECIES	1139	ENSMLUG00000030062	JAKMIP2 (ENSMLUG00000015865)	ENSMLUG00000015887	SCGB3A2 (ENSMLUG00000015894)	SPINK5 (ENSMLUG00000010680)	ENSMLUG00000027330	SPINK6 (ENSMLUG00000016837)	ENSMLUG00000025288	SPINK13 (ENSMLUG00000027219)	ENSMLUG00000022200	ENSMLUG00000029877	FBXO38 (ENSMLUG00000013064)	HTR4 (ENSMLUG00000003382)	ADRB2 (ENSMLUG00000006314)	SH3TC2 (ENSMLUG00000010270)	ABLIM3 (ENSMLUG00000001706) ##22	AFAP1L1 (ENSMLUG00000002902)	GRPEL2 (ENSMLUG00000029499)	PCYOX1L (ENSMLUG00000030590)	IL17B (ENSMLUG00000002907)	ENSMLUG00000002910	ARHGEF37 (ENSMLUG00000012793)	PPARGC1B (ENSMLUG00000013169)
Carnivora	ANCESTRAL SPECIES	8	ENSGT00390000013835	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Felidae	ANCESTRAL SPECIES	6	ENSGT00390000013835	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Panthera	ANCESTRAL SPECIES	6	ENSGT00390000013835	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00390000013835	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069
lion	MODERN SPECIES		ARL15 (ENSPLOG00000001509)	HSPB3 (ENSPLOG00000001528)	SNX18 (ENSPLOG00000001535)	ENSPLOG00000001546	ESM1 (ENSPLOG00000001557)	GZMK (ENSPLOG00000001565)	ENSPLOG00000001576	ENSPLOG00000001587	SPINK13 (ENSPLOG00000001600)	SPINK7 (ENSPLOG00000001613)	SPINK9 (ENSPLOG00000001627)	FBXO38 (ENSPLOG00000001656)	HTR4 (ENSPLOG00000001716)	ADRB2 (ENSPLOG00000001745)	SH3TC2 (ENSPLOG00000001760)	ABLIM3 (ENSPLOG00000001844) ##22	AFAP1L1 (ENSPLOG00000002014)	GRPEL2 (ENSPLOG00000002072)	PCYOX1L (ENSPLOG00000002086)	IL17B (ENSPLOG00000002102)	CSNK1A1 (ENSPLOG00000002155)	ARHGEF37 (ENSPLOG00000002246)	PPARGC1B (ENSPLOG00000002296)	PDE6A (ENSPLOG00000002368)	SLC26A2 (ENSPLOG00000002429)	TIGD6 (ENSPLOG00000002441)	HMGXB3 (ENSPLOG00000002456)	CSF1R (ENSPLOG00000002499)	PDGFRB (ENSPLOG00000002606)	CDX1 (ENSPLOG00000002644)	SLC6A7 (ENSPLOG00000002663)
leopard	MODERN SPECIES	44	ARL15 (ENSPPRG00000011207)	HSPB3 (ENSPPRG00000017335)	SNX18 (ENSPPRG00000009820)	ENSPPRG00000009307	ESM1 (ENSPPRG00000008350)	GZMK (ENSPPRG00000008035)	ENSPPRG00000007951	SPINK13 (ENSPPRG00000007556)	SPINK7 (ENSPPRG00000007094)	ENSPPRG00000006706	FBXO38 (ENSPPRG00000005614)	HTR4 (ENSPPRG00000004837)	ENSPPRG00000003920	ENSPPRG00000003693	SH3TC2 (ENSPPRG00000003501)	ABLIM3 (ENSPPRG00000001965) ##22	AFAP1L1 (ENSPPRG00000011153)	GRPEL2 (ENSPPRG00000009018)	PCYOX1L (ENSPPRG00000008748)	IL17B (ENSPPRG00000008266)	ENSPPRG00000008114	CSNK1A1 (ENSPPRG00000007912)	ARHGEF37 (ENSPPRG00000005780)	PPARGC1B (ENSPPRG00000004608)	PDE6A (ENSPPRG00000002126)	SLC26A2 (ENSPPRG00000022664)	TIGD6 (ENSPPRG00000015925)	HMGXB3 (ENSPPRG00000023078)	CSF1R (ENSPPRG00000017326)	PDGFRB (ENSPPRG00000014021)	ENSPPRG00000012982
Tiger	MODERN SPECIES	435								ENSPTIG00000021649	SPINK13 (ENSPTIG00000021653)	SPINK7 (ENSPTIG00000021667)	ENSPTIG00000021684	FBXO38 (ENSPTIG00000021696)	HTR4 (ENSPTIG00000021718)	ADRB2 (ENSPTIG00000008074)	SH3TC2 (ENSPTIG00000021733)	ABLIM3 (ENSPTIG00000021747) ##22	AFAP1L1 (ENSPTIG00000021805)	GRPEL2 (ENSPTIG00000021810)	PCYOX1L (ENSPTIG00000021812)	IL17B (ENSPTIG00000021817)
Cat	MODERN SPECIES		ENSFCAG00000024162	ARL15 (ENSFCAG00000003414)	HSPB3 (ENSFCAG00000005331)	SNX18 (ENSFCAG00000030748)	CSPG4B (ENSFCAG00000027319)	ESM1 (ENSFCAG00000031977)	GZMK (ENSFCAG00000014052)	SPINK13 (ENSFCAG00000041823)	SPINK7 (ENSFCAG00000038097)	SPINK9 (ENSFCAG00000035030)	ENSFCAG00000047904	FBXO38 (ENSFCAG00000006106)	HTR4 (ENSFCAG00000009931)	ADRB2 (ENSFCAG00000007954)	SH3TC2 (ENSFCAG00000007955)	ABLIM3 (ENSFCAG00000003622) ##22	AFAP1L1 (ENSFCAG00000003623)	GRPEL2 (ENSFCAG00000045597)	PCYOX1L (ENSFCAG00000003625)	IL17B (ENSFCAG00000003626)	CSNK1A1 (ENSFCAG00000031849)	ARHGEF37 (ENSFCAG00000003628)	PPARGC1B (ENSFCAG00000003629)	PDE6A (ENSFCAG00000003630)	SLC26A2 (ENSFCAG00000026045)	TIGD6 (ENSFCAG00000024582)	HMGXB3 (ENSFCAG00000003632)	CSF1R (ENSFCAG00000003633)	PDGFRB (ENSFCAG00000003634)	CDX1 (ENSFCAG00000022723)	SLC6A7 (ENSFCAG00000024714)
Caniformia	ANCESTRAL SPECIES	5	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00940000165187	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00910000147883
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00940000165187	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00910000147883
Mustelinae	ANCESTRAL SPECIES	13	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00860000135710	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00940000165187	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
American mink	MODERN SPECIES	18	HSPB3 (ENSNVIG00000002416)	SNX18 (ENSNVIG00000002394)	ENSNVIG00000002390	ENSNVIG00000002375	ESM1 (ENSNVIG00000002362)	GZMK (ENSNVIG00000002350)	ENSNVIG00000002344	ENSNVIG00000002339	SPINK7 (ENSNVIG00000002330)	ENSNVIG00000002321	FBXO38 (ENSNVIG00000002255)	HTR4 (ENSNVIG00000002194)	ADRB2 (ENSNVIG00000002179)	SH3TC2 (ENSNVIG00000002135)	ENSNVIG00000002115	ABLIM3 (ENSNVIG00000001879) ##22	AFAP1L1 (ENSNVIG00000001811)	GRPEL2 (ENSNVIG00000001766)	PCYOX1L (ENSNVIG00000001740)	IL17B (ENSNVIG00000001722)	CSNK1A1 (ENSNVIG00000001545)	ARHGEF37 (ENSNVIG00000001518)	PPARGC1B (ENSNVIG00000001480)	PDE6A (ENSNVIG00000001368)	SLC26A2 (ENSNVIG00000001354)	TIGD6 (ENSNVIG00000001345)	HMGXB3 (ENSNVIG00000001274)	CSF1R (ENSNVIG00000001216)	PDGFRB (ENSNVIG00000001164)	CDX1 (ENSNVIG00000001149)	SLC6A7 (ENSNVIG00000001070)
Ferret	MODERN SPECIES	162	ENSMPUG00000014329	SNX18 (ENSMPUG00000014325)	ENSMPUG00000014323	ENSMPUG00000014315	ESM1 (ENSMPUG00000014314)	GZMK (ENSMPUG00000014312)	SPINK7 (ENSMPUG00000014310)	ENSMPUG00000014307	ENSMPUG00000014304	FBXO38 (ENSMPUG00000014300)	HTR4 (ENSMPUG00000014297)	ENSMPUG00000014294	ADRB2 (ENSMPUG00000014292)	SH3TC2 (ENSMPUG00000014283)	ENSMPUG00000014282	ABLIM3 (ENSMPUG00000014280) ##22	AFAP1L1 (ENSMPUG00000014272)	GRPEL2 (ENSMPUG00000014268)	PCYOX1L (ENSMPUG00000014263)	IL17B (ENSMPUG00000014258)	CSNK1A1 (ENSMPUG00000014255)	ARHGEF37 (ENSMPUG00000014249)	PPARGC1B (ENSMPUG00000014245)	PDE6A (ENSMPUG00000014122)	SLC26A2 (ENSMPUG00000014113)	TIGD6 (ENSMPUG00000019320)	HMGXB3 (ENSMPUG00000014009)	CSF1R (ENSMPUG00000013999)	PDGFRB (ENSMPUG00000013990)	CDX1 (ENSMPUG00000013978)	SLC6A7 (ENSMPUG00000013975)
Ursidae	DUPLICATION
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES	141															ENSGT00940000165187	ENSGT00950000182850.a.b.a.b.b.c.a ##22
Giant Panda	MODERN SPECIES	13	ARL15 (ENSAMEG00000000617)	HSPB3 (ENSAMEG00000018576)	SNX18 (ENSAMEG00000012846)	ENSAMEG00000026934	ENSAMEG00000012842	ESM1 (ENSAMEG00000024413)	ENSAMEG00000012805	ENSAMEG00000019196	SPINK7 (ENSAMEG00000024511)	SPINK9 (ENSAMEG00000031483)	FBXO38 (ENSAMEG00000001149)	HTR4 (ENSAMEG00000001144)	ADRB2 (ENSAMEG00000020122)	SH3TC2 (ENSAMEG00000005533)	ENSAMEG00000028219	ABLIM3 (ENSAMEG00000005476) ##22	AFAP1L1 (ENSAMEG00000005448)	GRPEL2 (ENSAMEG00000029514)	PCYOX1L (ENSAMEG00000005410)	IL17B (ENSAMEG00000027431)	CSNK1A1 (ENSAMEG00000005335)	ARHGEF37 (ENSAMEG00000005310)	PPARGC1B (ENSAMEG00000005287)	PDE6A (ENSAMEG00000005215)	SLC26A2 (ENSAMEG00000005206)	TIGD6 (ENSAMEG00000020121)	HMGXB3 (ENSAMEG00000005161)	CSF1R (ENSAMEG00000005060)	PDGFRB (ENSAMEG00000004961)	CDX1 (ENSAMEG00000031327)	ENSAMEG00000028629
Ursus	ANCESTRAL SPECIES	443															ENSGT00940000165187	ENSGT00950000182850.a.b.a.b.b.c.a ##22
American black bear	MODERN SPECIES	8058															ENSUAMG00000013571	ENSUAMG00000013572 ##22
Ursidae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b.c.b ##22
Ursus	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b.c.b ##22
American black bear	MODERN SPECIES	7142																ENSUAMG00000000023 ##22
Ursidae	ANCESTRAL SPECIES	24	ENSGT00390000013835	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a.i	ENSGT00390000018810	ENSGT00940000161886	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00940000165308	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.d ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00910000147883
Ursus	ANCESTRAL SPECIES	10	ENSGT00940000157072	ENSGT00390000013835	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000161876	ENSGT00530000064312	ENSGT00940000166334	ENSGT00940000165308	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.d ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a.c	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Polar bear	MODERN SPECIES	179	ITGA2 (ENSUMAG00000005743)	MOCS2 (ENSUMAG00000005732)	FST (ENSUMAG00000005725)	NDUFS4 (ENSUMAG00000005716)	ARL15 (ENSUMAG00000005708)	HSPB3 (ENSUMAG00000005699)	ESM1 (ENSUMAG00000005681)	GZMK (ENSUMAG00000005679)	SPINK7 (ENSUMAG00000005677)	SPINK9 (ENSUMAG00000005675)	ENSUMAG00000005667	FBXO38 (ENSUMAG00000005518)	HTR4 (ENSUMAG00000005494)	ADRB2 (ENSUMAG00000005490)	SH3TC2 (ENSUMAG00000005460)	ABLIM3 (ENSUMAG00000005443) ##22	AFAP1L1 (ENSUMAG00000005437)	GRPEL2 (ENSUMAG00000005433)	PCYOX1L (ENSUMAG00000005426)	IL17B (ENSUMAG00000005420)	CSNK1A1 (ENSUMAG00000005410)	ARHGEF37 (ENSUMAG00000005379)	PPARGC1B (ENSUMAG00000005361)	PDE6A (ENSUMAG00000004883)	SLC26A2 (ENSUMAG00000004796)	TIGD6 (ENSUMAG00000004793)	HMGXB3 (ENSUMAG00000004789)	CSF1R (ENSUMAG00000004783)	PDGFRB (ENSUMAG00000004358)	SLC6A7 (ENSUMAG00000004279)	ENSUMAG00000004228
Canidae	ANCESTRAL SPECIES	7	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00940000165187	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Red fox	MODERN SPECIES	2			HSPB3 (ENSVVUG00000014652)	ENSVVUG00000014630	ENSVVUG00000014629	ESM1 (ENSVVUG00000014614)	GZMK (ENSVVUG00000014607)	ENSVVUG00000014599	SPINK7 (ENSVVUG00000014584)	SPINK9 (ENSVVUG00000014579)	FBXO38 (ENSVVUG00000014567)	HTR4 (ENSVVUG00000014538)	ADRB2 (ENSVVUG00000014517)	SH3TC2 (ENSVVUG00000014444)	ENSVVUG00000014427	ABLIM3 (ENSVVUG00000014418) ##22	AFAP1L1 (ENSVVUG00000014410)	GRPEL2 (ENSVVUG00000014408)	PCYOX1L (ENSVVUG00000014404)	IL17B (ENSVVUG00000014402)	CSNK1A1 (ENSVVUG00000014391)	ARHGEF37 (ENSVVUG00000014383)	PPARGC1B (ENSVVUG00000014358)	PDE6A (ENSVVUG00000007855)	SLC26A2 (ENSVVUG00000007543)	TIGD6 (ENSVVUG00000007540)	HMGXB3 (ENSVVUG00000007485)	CSF1R (ENSVVUG00000007458)	PDGFRB (ENSVVUG00000007442)	ENSVVUG00000007438	SLC6A7 (ENSVVUG00000007422)
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724	ENSGT00940000154091.a.a	ENSGT00390000018810	ENSGT00940000161886	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00940000165308	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00940000165187	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Dingo	MODERN SPECIES	324	FST (ENSCAFG00020023298)	ENSCAFG00020023309	ARL15 (ENSCAFG00020023332)	HSPB3 (ENSCAFG00020023339)	SNX18 (ENSCAFG00020023340)	ENSCAFG00020023344	ENSCAFG00020023347	ESM1 (ENSCAFG00020023350)	GZMK (ENSCAFG00020023353)	SPINK7 (ENSCAFG00020023362)	FBXO38 (ENSCAFG00020023380)	HTR4 (ENSCAFG00020023454)	ADRB2 (ENSCAFG00020023459)	SH3TC2 (ENSCAFG00020023464)	ENSCAFG00020023475	ABLIM3 (ENSCAFG00020023480) ##22	AFAP1L1 (ENSCAFG00020023491)	GRPEL2 (ENSCAFG00020023496)	PCYOX1L (ENSCAFG00020023499)	IL17B (ENSCAFG00020023501)	CSNK1A1 (ENSCAFG00020023507)	ARHGEF37 (ENSCAFG00020023512)	PPARGC1B (ENSCAFG00020023524)	PDE6A (ENSCAFG00020023546)	SLC26A2 (ENSCAFG00020023581)	TIGD6 (ENSCAFG00020023582)	HMGXB3 (ENSCAFG00020023583)	CSF1R (ENSCAFG00020023585)	PDGFRB (ENSCAFG00020023594)	CDX1 (ENSCAFG00020023603)	SLC6A7 (ENSCAFG00020023615)
Dog	MODERN SPECIES	32	ENSCAFG00845000328	ARL15 (ENSCAFG00845000266)	ENSCAFG00845011675	SNX18 (ENSCAFG00845011602)	ENSCAFG00845011529	ESM1 (ENSCAFG00845011480)	GZMK (ENSCAFG00845011436)	ENSCAFG00845011407	SPINK7 (ENSCAFG00845011376)	SPINK9 (ENSCAFG00845011276)	ENSCAFG00845011221	FBXO38 (ENSCAFG00845010983)	HTR4 (ENSCAFG00845010692)	ADRB2 (ENSCAFG00845010580)	SH3TC2 (ENSCAFG00845010410)	ABLIM3 (ENSCAFG00845010075) ##22	AFAP1L1 (ENSCAFG00845009783)	PCYOX1L (ENSCAFG00845009623)	IL17B (ENSCAFG00845009566)	CSNK1A1 (ENSCAFG00845009382)	ARHGEF37 (ENSCAFG00845009298)	PPARGC1B (ENSCAFG00845009130)	PDE6A (ENSCAFG00845008935)	SLC26A2 (ENSCAFG00845008861)	HMGXB3 (ENSCAFG00845008592)	CSF1R (ENSCAFG00845008395)	PDGFRB (ENSCAFG00845008241)	CDX1 (ENSCAFG00845008164)	SLC6A7 (ENSCAFG00845008088)	CAMK2A (ENSCAFG00845007828)	ARSI (ENSCAFG00845007705)
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Suina	ANCESTRAL SPECIES	11	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Pig	MODERN SPECIES	10	SPINK14 (ENSSSCG00000033173)	ENSSSCG00000052577	ENSSSCG00000056375	ENSSSCG00000057744	SPINK6 (ENSSSCG00000058580)	MARCOL (ENSSSCG00000059951)	ENSSSCG00000029257	ENSSSCG00000047137	SPINK7 (ENSSSCG00000054392)	ENSSSCG00000061955	SPINK9 (ENSSSCG00000014426)	FBXO38 (ENSSSCG00000014427)	HTR4 (ENSSSCG00000014428)	ADRB2 (ENSSSCG00000052586)	SH3TC2 (ENSSSCG00000023279)	ABLIM3 (ENSSSCG00000014430) ##22	AFAP1L1 (ENSSSCG00000014431)	GRPEL2 (ENSSSCG00000014432)	PCYOX1L (ENSSSCG00000014433)	IL17B (ENSSSCG00000014434)	ENSSSCG00000032383	CSNK1A1 (ENSSSCG00000014435)	ARHGEF37 (ENSSSCG00000014436)	PPARGC1B (ENSSSCG00000014437)	PDE6A (ENSSSCG00000014438)	SLC26A2 (ENSSSCG00000039045)	HMGXB3 (ENSSSCG00000014440)	CSF1R (ENSSSCG00000014441)	PDGFRB (ENSSSCG00000022741)	CDX1 (ENSSSCG00000060480)	SLC6A7 (ENSSSCG00000014447)
Chacoan peccary	MODERN SPECIES	912	SCGB3A2 (ENSCWAG00000014402)	C5orf46 (ENSCWAG00000014434)	SPINK5 (ENSCWAG00000014523)	ENSCWAG00000015464	ENSCWAG00000003957	SPINK6 (ENSCWAG00000003986)	MARCOL (ENSCWAG00000004019)	ENSCWAG00000004038	SPINK13 (ENSCWAG00000004078)	SPINK7 (ENSCWAG00000004155)	SPINK9 (ENSCWAG00000004188)	FBXO38 (ENSCWAG00000004229)	HTR4 (ENSCWAG00000004339)	ADRB2 (ENSCWAG00000004475)	SH3TC2 (ENSCWAG00000004496)	ABLIM3 (ENSCWAG00000004703) ##22	AFAP1L1 (ENSCWAG00000005442)	GRPEL2 (ENSCWAG00000005612)	PCYOX1L (ENSCWAG00000005628)	IL17B (ENSCWAG00000005656)	CSNK1A1 (ENSCWAG00000005716)	ARHGEF37 (ENSCWAG00000005846)	PPARGC1B (ENSCWAG00000005883)	PDE6A (ENSCWAG00000005987)	SLC26A2 (ENSCWAG00000006207)	HMGXB3 (ENSCWAG00000006248)	ENSCWAG00000006349	ENSCWAG00000006378	PDGFRB (ENSCWAG00000006419)	CDX1 (ENSCWAG00000006455)	SLC6A7 (ENSCWAG00000006482)
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Cetacea	ANCESTRAL SPECIES	1	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00950000182965.a.b.b.a	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.k.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00950000182965.a.b.b.a	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.k.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000153556.A.b.b	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.k.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000153556.A.b.b	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.k.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000153556.A.b.b	ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.k.a	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Narwhal	MODERN SPECIES	298	ENSMMNG00015000321	ENSMMNG00015000335	JAKMIP2 (ENSMMNG00015000470)	SPINK1 (ENSMMNG00015000633)	SCGB3A2 (ENSMMNG00015000655)	C5orf46 (ENSMMNG00015000681)	SPINK14 (ENSMMNG00015000704)	SPINK6 (ENSMMNG00015000740)	ENSMMNG00015000765	SPINK13 (ENSMMNG00015000781)	SPINK7 (ENSMMNG00015000804)	FBXO38 (ENSMMNG00015000846)	HTR4 (ENSMMNG00015000986)	ADRB2 (ENSMMNG00015001090)	SH3TC2 (ENSMMNG00015001111)	ABLIM3 (ENSMMNG00015001180) ##22	AFAP1L1 (ENSMMNG00015001296)	ENSMMNG00015001433	PCYOX1L (ENSMMNG00015001461)	IL17B (ENSMMNG00015001496)	CSNK1A1 (ENSMMNG00015001586)	ARHGEF37 (ENSMMNG00015001691)	PPARGC1B (ENSMMNG00015001754)	PDE6A (ENSMMNG00015001823)	SLC26A2 (ENSMMNG00015001926)	HMGXB3 (ENSMMNG00015001971)	CSF1R (ENSMMNG00015002039)	PDGFRB (ENSMMNG00015002105)	CDX1 (ENSMMNG00015002198)	SLC6A7 (ENSMMNG00015002220)	CAMK2A (ENSMMNG00015002266)
Beluga whale	MODERN SPECIES	34	GPR151 (ENSDLEG00000003448)	PPP2R2B (ENSDLEG00000003469)	STK32A (ENSDLEG00000003484)	DPYSL3 (ENSDLEG00000003512)	JAKMIP2 (ENSDLEG00000003547)	ENSDLEG00000003602	SCGB3A2 (ENSDLEG00000003606)	CUNH5orf46 (ENSDLEG00000003615)	SPINK5 (ENSDLEG00000003623)	ENSDLEG00000003637	ENSDLEG00000003646	FBXO38 (ENSDLEG00000003654)	HTR4 (ENSDLEG00000003669)	SH3TC2 (ENSDLEG00000003686)	ADRB2 (ENSDLEG00000003724)	ABLIM3 (ENSDLEG00000003752) ##22	AFAP1L1 (ENSDLEG00000003846)	GRPEL2 (ENSDLEG00000003935)	PCYOX1L (ENSDLEG00000003965)	IL17B (ENSDLEG00000003971)	CSNK1A1 (ENSDLEG00000003984)	ARHGEF37 (ENSDLEG00000003999)	PPARGC1B (ENSDLEG00000004020)	PDE6A (ENSDLEG00000004080)	SLC26A2 (ENSDLEG00000004278)	HMGXB3 (ENSDLEG00000004299)	CSF1R (ENSDLEG00000004672)	PDGFRB (ENSDLEG00000004691)	CDX1 (ENSDLEG00000004703)	SLC6A7 (ENSDLEG00000004710)	CAMK2A (ENSDLEG00000004732)
Vaquita	MODERN SPECIES	14	STK32A (ENSPSNG00000000717)	DPYSL3 (ENSPSNG00000000668)	ENSPSNG00000000632	JAKMIP2 (ENSPSNG00000000558)	SPINK1 (ENSPSNG00000000390)	SCGB3A2 (ENSPSNG00000000357)	C5orf46 (ENSPSNG00000000335)	ENSPSNG00000000317	SPINK6 (ENSPSNG00000000297)	SPINK13 (ENSPSNG00000000253)	SPINK7 (ENSPSNG00000000221)	FBXO38 (ENSPSNG00000000192)	HTR4 (ENSPSNG00000000133)	ADRB2 (ENSPSNG00000019879)	SH3TC2 (ENSPSNG00000019837)	ABLIM3 (ENSPSNG00000019641) ##22	AFAP1L1 (ENSPSNG00000019557)	GRPEL2 (ENSPSNG00000019509)	PCYOX1L (ENSPSNG00000019459)	IL17B (ENSPSNG00000019415)	CSNK1A1 (ENSPSNG00000019268)	ARHGEF37 (ENSPSNG00000019187)	PPARGC1B (ENSPSNG00000019085)	PDE6A (ENSPSNG00000018694)	SLC26A2 (ENSPSNG00000018617)	TIGD6 (ENSPSNG00000018522)	HMGXB3 (ENSPSNG00000018442)	CSF1R (ENSPSNG00000018376)	PDGFRB (ENSPSNG00000018303)	CDX1 (ENSPSNG00000018239)	SLC6A7 (ENSPSNG00000018104)
Dolphin	MODERN SPECIES	1751														ADRB2 (ENSTTRG00000008381)	SH3TC2 (ENSTTRG00000008382)	ABLIM3 (ENSTTRG00000008384) ##22	AFAP1L1 (ENSTTRG00000008394)	GRPEL2 (ENSTTRG00000008406)	PCYOX1L (ENSTTRG00000008409)	IL17B (ENSTTRG00000008419)	CSNK1A1 (ENSTTRG00000008420)	ARHGEF37 (ENSTTRG00000008422)	PPARGC1B (ENSTTRG00000008430)	PDE6A (ENSTTRG00000008434)	SLC26A2 (ENSTTRG00000008441)	HMGXB3 (ENSTTRG00000008445)	CSF1R (ENSTTRG00000008450)
Sperm whale	MODERN SPECIES	19	JAKMIP2 (ENSPCTG00005002993)	SPINK1 (ENSPCTG00005003163)	SCGB3A2 (ENSPCTG00005003173)	C8H5orf46 (ENSPCTG00005003184)	SPINK5 (ENSPCTG00005003196)	SPINK14 (ENSPCTG00005003207)	SPINK6 (ENSPCTG00005003225)	ENSPCTG00005003234	SPINK13 (ENSPCTG00005003241)	SPINK7 (ENSPCTG00005003251)	SPINK9 (ENSPCTG00005003264)	ENSPCTG00005003282	FBXO38 (ENSPCTG00005003322)	HTR4 (ENSPCTG00005003439)	SH3TC2 (ENSPCTG00005003526)	ABLIM3 (ENSPCTG00005003581) ##22	AFAP1L1 (ENSPCTG00005003707)	GRPEL2 (ENSPCTG00005003736)	PCYOX1L (ENSPCTG00005003744)	IL17B (ENSPCTG00005003754)	CSNK1A1 (ENSPCTG00005000355)	ENSPCTG00005000378	PDE6A (ENSPCTG00005000439)	SLC26A2 (ENSPCTG00005000530)	TIGD6 (ENSPCTG00005000546)	HMGXB3 (ENSPCTG00005000575)	ENSPCTG00005000659	ENSPCTG00005000747	ENSPCTG00005000790	ENSPCTG00005000808	ZNF300 (ENSPCTG00005000820)
Blue whale	MODERN SPECIES	14	JAKMIP2 (ENSBMSG00010000163)	SPINK1 (ENSBMSG00010000202)	SCGB3A2 (ENSBMSG00010000232)	C5orf46 (ENSBMSG00010000246)	SPINK5 (ENSBMSG00010000284)	ENSBMSG00010000343	ENSBMSG00010000359	SPINK6 (ENSBMSG00010000377)	ENSBMSG00010000399	SPINK13 (ENSBMSG00010000418)	SPINK7 (ENSBMSG00010000439)	FBXO38 (ENSBMSG00010000482)	HTR4 (ENSBMSG00010000543)	ADRB2 (ENSBMSG00010000651)	SH3TC2 (ENSBMSG00010000673)	ABLIM3 (ENSBMSG00010000753) ##22	AFAP1L1 (ENSBMSG00010000816)	ENSBMSG00010000880	PCYOX1L (ENSBMSG00010000893)	IL17B (ENSBMSG00010000910)	CSNK1A1 (ENSBMSG00010000981)	ARHGEF37 (ENSBMSG00010001077)	PPARGC1B (ENSBMSG00010001147)	PDE6A (ENSBMSG00010001237)	SLC26A2 (ENSBMSG00010001309)	TIGD6 (ENSBMSG00010001323)	HMGXB3 (ENSBMSG00010001346)	CSF1R (ENSBMSG00010001379)	ENSBMSG00010001419	PDGFRB (ENSBMSG00010001441)	CDX1 (ENSBMSG00010001462)
Pecora	ANCESTRAL SPECIES		ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Yarkand deer	MODERN SPECIES	32	C5orf46 (ENSCHYG00000002812)	SPINK5 (ENSCHYG00000002857)	ENSCHYG00000002951	SPINK14 (ENSCHYG00000002963)	SPINK6 (ENSCHYG00000002969)	ENSCHYG00000002981	ENSCHYG00000002989	ENSCHYG00000002996	SPINK13 (ENSCHYG00000003006)	SPINK7 (ENSCHYG00000003021)	SPINK9 (ENSCHYG00000003036)	FBXO38 (ENSCHYG00000003111)	HTR4 (ENSCHYG00000003272)	ADRB2 (ENSCHYG00000003348)	SH3TC2 (ENSCHYG00000003366)	ABLIM3 (ENSCHYG00000003490) ##22	AFAP1L1 (ENSCHYG00000003583)	GRPEL2 (ENSCHYG00000003657)	PCYOX1L (ENSCHYG00000003705)	IL17B (ENSCHYG00000003726)	ENSCHYG00000003774	ARHGEF37 (ENSCHYG00000003829)	PPARGC1B (ENSCHYG00000003895)	PDE6A (ENSCHYG00000003974)	SLC26A2 (ENSCHYG00000004031)	HMGXB3 (ENSCHYG00000004053)	CSF1R (ENSCHYG00000004143)	PDGFRB (ENSCHYG00000004180)	CDX1 (ENSCHYG00000004360)	SLC6A7 (ENSCHYG00000004421)	CAMK2A (ENSCHYG00000004518)
Percora_a	ANCESTRAL SPECIES		ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308.c.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Siberian musk deer	MODERN SPECIES	46														ADRB2 (ENSMMSG00000000847)	SH3TC2 (ENSMMSG00000000803)	ABLIM3 (ENSMMSG00000000689) ##22	AFAP1L1 (ENSMMSG00000000557)	GRPEL2 (ENSMMSG00000000506)	PCYOX1L (ENSMMSG00000000477)	IL17B (ENSMMSG00000000450)
Bovidae	ANCESTRAL SPECIES		ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00980000199376	ENSGT00940000165308.c.b	ENSGT00940000165308.c.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00980000199376	ENSGT00960000191860	ENSGT00940000165308.c.b	ENSGT00940000165308.c.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.i	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
American bison	MODERN SPECIES	3206	ENSBBBG00000010061	SPINK14 (ENSBBBG00000010046)	SPINK6 (ENSBBBG00000001700)	MARCOL (ENSBBBG00000010037)	ENSBBBG00000010034	ENSBBBG00000010033	ENSBBBG00000010030	ENSBBBG00000025494	SPINK13 (ENSBBBG00000007867)	SPINK7 (ENSBBBG00000025440)	SPINK9 (ENSBBBG00000025423)	FBXO38 (ENSBBBG00000007859)	HTR4 (ENSBBBG00000025179)	ADRB2 (ENSBBBG00000008077)	SH3TC2 (ENSBBBG00000025093)	ABLIM3 (ENSBBBG00000025023) ##22	AFAP1L1 (ENSBBBG00000024685)	ENSBBBG00000024632	PCYOX1L (ENSBBBG00000024617)	IL17B (ENSBBBG00000024601)	ENSBBBG00000024576	ARHGEF37 (ENSBBBG00000000273)	PPARGC1B (ENSBBBG00000024422)	PDE6A (ENSBBBG00000024328)	SLC26A2 (ENSBBBG00000008983)	HMGXB3 (ENSBBBG00000006289)	CSF1R (ENSBBBG00000006257)	PDGFRB (ENSBBBG00000006246)	CDX1 (ENSBBBG00000023991)	SLC6A7 (ENSBBBG00000008692)	CAMK2A (ENSBBBG00000023955)
Bos	ANCESTRAL SPECIES	3	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00980000199376	ENSGT00960000191860	ENSGT00940000165308.c.b	ENSGT00940000165308.c.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.i	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Bos_a	ANCESTRAL SPECIES	2	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00980000199376	ENSGT00960000191860	ENSGT00940000165308.c.b	ENSGT00940000165308.c.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.i	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Wild yak	MODERN SPECIES	716																ABLIM3 (ENSBMUG00000014582) ##22	AFAP1L1 (ENSBMUG00000014791)	GRPEL2 (ENSBMUG00000014818)	PCYOX1L (ENSBMUG00000014872)	IL17B (ENSBMUG00000014891)	ENSBMUG00000014922	ENSBMUG00000014942	ARHGEF37 (ENSBMUG00000014980)	PPARGC1B (ENSBMUG00000015009)	PDE6A (ENSBMUG00000015080)	ENSBMUG00000015150	SLC26A2 (ENSBMUG00000015170)	HMGXB3 (ENSBMUG00000015189)	CSF1R (ENSBMUG00000015223)
Domestic yak	MODERN SPECIES	27	C5orf46 (ENSBGRG00000016434)	SPINK5 (ENSBGRG00000016553)	ENSBGRG00000016830	SPINK14 (ENSBGRG00000016872)	SPINK6 (ENSBGRG00000016994)	MARCOL (ENSBGRG00000017105)	ENSBGRG00000017229	ENSBGRG00000017256	SPINK13 (ENSBGRG00000017334)	SPINK7 (ENSBGRG00000017405)	SPINK9 (ENSBGRG00000017477)	FBXO38 (ENSBGRG00000017630)	HTR4 (ENSBGRG00000018072)	ADRB2 (ENSBGRG00000018281)	SH3TC2 (ENSBGRG00000018333)	ABLIM3 (ENSBGRG00000018552) ##22	AFAP1L1 (ENSBGRG00000018883)	GRPEL2 (ENSBGRG00000018960)	PCYOX1L (ENSBGRG00000019037)	IL17B (ENSBGRG00000019180)	ENSBGRG00000019297	ARHGEF37 (ENSBGRG00000019623)	PPARGC1B (ENSBGRG00000019954)	PDE6A (ENSBGRG00000020131)	SLC26A2 (ENSBGRG00000020568)	HMGXB3 (ENSBGRG00000020613)	CSF1R (ENSBGRG00000020676)	PDGFRB (ENSBGRG00000020782)	CDX1 (ENSBGRG00000021205)	SLC6A7 (ENSBGRG00000021265)	CAMK2A (ENSBGRG00000021420)
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00900000141664	ENSGT00740000116871	ENSGT00940000165308.c.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b.i	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823	ENSGT00940000155150.b.b
Cow	MODERN SPECIES	26	SPINK1 (ENSBTAG00000015558)	SCGB3A2 (ENSBTAG00000004153)	C7H5orf46 (ENSBTAG00000015465)	SPINK5 (ENSBTAG00000019140)	ENSBTAG00000052309	SPINK6 (ENSBTAG00000033470)	ENSBTAG00000052607	ENSBTAG00000050942	ENSBTAG00000033759	SPINK7 (ENSBTAG00000044183)	SPINK9 (ENSBTAG00000052488)	FBXO38 (ENSBTAG00000020303)	HTR4 (ENSBTAG00000010837)	ADRB2 (ENSBTAG00000002144)	SH3TC2 (ENSBTAG00000017151)	ABLIM3 (ENSBTAG00000004896) ##22	ENSBTAG00000048563	AFAP1L1 (ENSBTAG00000019948)	ENSBTAG00000052766	GRPEL2 (ENSBTAG00000019950)	PCYOX1L (ENSBTAG00000019951)	IL17B (ENSBTAG00000010578)	CSNK1A1 (ENSBTAG00000005326)	ARHGEF37 (ENSBTAG00000015419)	PPARGC1B (ENSBTAG00000012943)	PDE6A (ENSBTAG00000012945)	SLC26A2 (ENSBTAG00000014615)	HMGXB3 (ENSBTAG00000012768)	CSF1R (ENSBTAG00000012771)	PDGFRB (ENSBTAG00000002804)	CDX1 (ENSBTAG00000012014)
Hybrid Bos Indicus	MODERN SPECIES	26	SPINK5 (ENSBIXG00005007759)	ENSBIXG00005018705	SPINK14 (ENSBIXG00005018742)	SPINK6 (ENSBIXG00005018768)	ENSBIXG00005003054	MARCOL (ENSBIXG00005018782)	ENSBIXG00005018796	SPINK13 (ENSBIXG00005018819)	SPINK7 (ENSBIXG00005018848)	SPINK9 (ENSBIXG00005018872)	FBXO38 (ENSBIXG00005018959)	HTR4 (ENSBIXG00005019071)	ADRB2 (ENSBIXG00005019131)	ENSBIXG00005003118	SH3TC2 (ENSBIXG00005019209)	ABLIM3 (ENSBIXG00005019407) ##22	ENSBIXG00005019455	AFAP1L1 (ENSBIXG00005003178)	ENSBIXG00005019586	PCYOX1L (ENSBIXG00005003199)	IL17B (ENSBIXG00005003205)	ENSBIXG00005019760	ARHGEF37 (ENSBIXG00005019892)	PPARGC1B (ENSBIXG00005007671)	PDE6A (ENSBIXG00005006399)	SLC26A2 (ENSBIXG00005003313)	HMGXB3 (ENSBIXG00005020173)	CSF1R (ENSBIXG00005003356)	PDGFRB (ENSBIXG00005003405)	CDX1 (ENSBIXG00005003420)	SLC6A7 (ENSBIXG00005020348)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00980000199376.a	ENSGT00940000165308.c.b	ENSGT00940000165308.c.a	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700.ub.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Goat	MODERN SPECIES	26	SPINK1 (ENSCHIG00000026738)	SCGB3A2 (ENSCHIG00000025727)	SPINK5 (ENSCHIG00000016400)	ENSCHIG00000008592	ENSCHIG00000014591	SPINK6 (ENSCHIG00000020018)	ENSCHIG00000015048	ENSCHIG00000018387	ENSCHIG00000025526	SPINK7 (ENSCHIG00000013983)	SPINK9 (ENSCHIG00000013135)	ENSCHIG00000016093	FBXO38 (ENSCHIG00000026135)	HTR4 (ENSCHIG00000022715)	SH3TC2 (ENSCHIG00000015736)	ABLIM3 (ENSCHIG00000021812) ##22	AFAP1L1 (ENSCHIG00000003854)	GRPEL2 (ENSCHIG00000026744)	PCYOX1L (ENSCHIG00000022991)	IL17B (ENSCHIG00000026913)	ENSCHIG00000012892	ARHGEF37 (ENSCHIG00000025128)	PPARGC1B (ENSCHIG00000004409)	PDE6A (ENSCHIG00000017922)	SLC26A2 (ENSCHIG00000012265)	TIGD6 (ENSCHIG00000026767)	HMGXB3 (ENSCHIG00000011628)	CSF1R (ENSCHIG00000026731)	PDGFRB (ENSCHIG00000024821)	CDX1 (ENSCHIG00000022811)	SLC6A7 (ENSCHIG00000022198)
Rambouillet Sheep	MODERN SPECIES	21	C5orf46 (ENSOARG00020022918)	SPINK5 (ENSOARG00020022999)	ENSOARG00020023080	SPINK14 (ENSOARG00020023206)	SPINK6 (ENSOARG00020023247)	ENSOARG00020023278	ENSOARG00020023292	ENSOARG00020023322	SPINK13 (ENSOARG00020023348)	SPINK7 (ENSOARG00020023362)	ENSOARG00020023389	FBXO38 (ENSOARG00020023455)	HTR4 (ENSOARG00020023572)	ADRB2 (ENSOARG00020023772)	SH3TC2 (ENSOARG00020023787)	ABLIM3 (ENSOARG00020023876) ##22	AFAP1L1 (ENSOARG00020024308)	GRPEL2 (ENSOARG00020024427)	PCYOX1L (ENSOARG00020009821)	IL17B (ENSOARG00020009839)	ENSOARG00020009902	ARHGEF37 (ENSOARG00020010150)	PPARGC1B (ENSOARG00020010324)	PDE6A (ENSOARG00020010736)	SLC26A2 (ENSOARG00020011309)	HMGXB3 (ENSOARG00020011388)	CSF1R (ENSOARG00020011611)	PDGFRB (ENSOARG00020011812)	CDX1 (ENSOARG00020011893)	SLC6A7 (ENSOARG00020011935)	CAMK2A (ENSOARG00020012100)
Camelidae	ANCESTRAL SPECIES	1	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00980000199376	ENSGT00400000023784	ENSGT00940000161876	ENSGT00530000064312	ENSGT00940000165308	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Arabian camel	MODERN SPECIES	22	ENSCDRG00005005467	C5orf46 (ENSCDRG00005005444)	ENSCDRG00005005396	ENSCDRG00005005362	SPINK6 (ENSCDRG00005005335)	ENSCDRG00005005323	ENSCDRG00005003332	SPINK13 (ENSCDRG00005003321)	SPINK7 (ENSCDRG00005003303)	SPINK9 (ENSCDRG00005003292)	ENSCDRG00005003281	FBXO38 (ENSCDRG00005003249)	HTR4 (ENSCDRG00005003218)	ADRB2 (ENSCDRG00005003202)	SH3TC2 (ENSCDRG00005003129)	ABLIM3 (ENSCDRG00005003081) ##22	AFAP1L1 (ENSCDRG00005003036)	GRPEL2 (ENSCDRG00005003018)	PCYOX1L (ENSCDRG00005003002)	IL17B (ENSCDRG00005002983)	ENSCDRG00005002711	ARHGEF37 (ENSCDRG00005002648)	PPARGC1B (ENSCDRG00005002597)	PDE6A (ENSCDRG00005002480)	SLC26A2 (ENSCDRG00005002437)	TIGD6 (ENSCDRG00005002431)	HMGXB3 (ENSCDRG00005002388)	CSF1R (ENSCDRG00005002338)	PDGFRB (ENSCDRG00005002306)	CDX1 (ENSCDRG00005002290)	SLC6A7 (ENSCDRG00005002268)
Eulipotyphla	ANCESTRAL SPECIES	161																ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854
Common shrew	MODERN SPECIES	5330																ABLIM3 (ENSSARG00000006265) ##22
Hedgehog	MODERN SPECIES	6833																ABLIM3 (ENSEEUG00000015142) ##22	AFAP1L1 (ENSEEUG00000015285)
Atlantogenata	ANCESTRAL SPECIES		ENSGT00940000153713.B.d	ENSGT00530000064228	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00520000060726.a	ENSGT00940000162856	ENSGT00530000064225	ENSGT00740000116871	ENSGT00940000161876	ENSGT01080000259604	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Xenarthra	ANCESTRAL SPECIES	748																ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a
Armadillo	MODERN SPECIES	805																ABLIM3 (ENSDNOG00000002530) ##22	AFAP1L1 (ENSDNOG00000018762)	GRPEL2 (ENSDNOG00000048596)	PCYOX1L (ENSDNOG00000017886)	IL17B (ENSDNOG00000002613)	CSNK1A1 (ENSDNOG00000042645)	ARHGEF37 (ENSDNOG00000047746)
Sloth	MODERN SPECIES	6082																ABLIM3 (ENSCHOG00000001974) ##22
Afrotheria	ANCESTRAL SPECIES	7	ENSGT00940000157770	ENSGT01030000234518.A.a.b	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000153713.B.d	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000161876	ENSGT01080000259604	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Afrotheria_a	ANCESTRAL SPECIES	7	ENSGT00940000157770	ENSGT01030000234518.A.a.b	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000153713.B.d	ENSGT00420000029848.B	ENSGT00390000011484	ENSGT00510000048608	ENSGT00940000161876	ENSGT01080000259604	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000161330	ENSGT01100000263544.c.a.a.a	ENSGT00940000163700	ENSGT00390000006983	ENSGT00940000155506	ENSGT00940000157138	ENSGT00940000162069	ENSGT00940000160823
Elephant	MODERN SPECIES	2	TCERG1 (ENSLAFG00000013796)	GPR151 (ENSLAFG00000013805)	PPP2R2B (ENSLAFG00000013806)	STK32A (ENSLAFG00000013013)	DPYSL3 (ENSLAFG00000013018)	JAKMIP2 (ENSLAFG00000014366)	SCGB3A2 (ENSLAFG00000011483)	C5orf46 (ENSLAFG00000031450)	SPINK5 (ENSLAFG00000002815)	SPINK7 (ENSLAFG00000022995)	ENSLAFG00000016388	FBXO38 (ENSLAFG00000014405)	HTR4 (ENSLAFG00000013339)	ADRB2 (ENSLAFG00000032235)	SH3TC2 (ENSLAFG00000006471)	ABLIM3 (ENSLAFG00000006481) ##22	AFAP1L1 (ENSLAFG00000006486)	GRPEL2 (ENSLAFG00000006489)	PCYOX1L (ENSLAFG00000006493)	IL17B (ENSLAFG00000021716)	CSNK1A1 (ENSLAFG00000002394)	ARHGEF37 (ENSLAFG00000013074)	PPARGC1B (ENSLAFG00000012339)	PDE6A (ENSLAFG00000022256)	SLC26A2 (ENSLAFG00000029084)	HMGXB3 (ENSLAFG00000016790)	CSF1R (ENSLAFG00000016799)	PDGFRB (ENSLAFG00000016816)	CDX1 (ENSLAFG00000025906)	SLC6A7 (ENSLAFG00000011811)	ENSLAFG00000023243
Hyrax	MODERN SPECIES	5641																ABLIM3 (ENSPCAG00000008148) ##22
Tenrec	MODERN SPECIES	6660																ABLIM3 (ENSETEG00000019476) ##22
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00940000153451.a.a.b.i	ENSGT00940000158129	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00990000204698	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153713.B.d	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b
Marsupialia_b	DUPLICATION
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00940000158129.f	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00990000204698	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.f ##22	ENSGT00950000182850.a.b.a.b.b.e ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153713.B.d	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00940000158129.f	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00990000204698	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.f ##22	ENSGT00950000182850.a.b.a.b.b.e ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153713.B.d	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b
Diprotodontia_a	ANCESTRAL SPECIES	5	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00980000199878.B	ENSGT00980000199878.A	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.f ##22	ENSGT00950000182850.a.b.a.b.b.e ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153713.B.d	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00940000154576.d	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412
koala	MODERN SPECIES	189							ENSPCIG00000015325	ENSPCIG00000015331	ENSPCIG00000015335	ENSPCIG00000031979	FBXO38 (ENSPCIG00000014979)	HTR4 (ENSPCIG00000030236)	ADRB2 (ENSPCIG00000030235)	SH3TC2 (ENSPCIG00000030229)	ENSPCIG00000030225 ##22	ENSPCIG00000030223 ##22	AFAP1L1 (ENSPCIG00000030220)	GRPEL2 (ENSPCIG00000030218)	PCYOX1L (ENSPCIG00000016832)	IL17B (ENSPCIG00000016831)	JAKMIP2 (ENSPCIG00000006340)	SFXN1 (ENSPCIG00000014031)	DRD1 (ENSPCIG00000014024)	ENSPCIG00000009006	MSX2 (ENSPCIG00000010374)	ENSPCIG00000028337	NSG2 (ENSPCIG00000020950)	CPEB4 (ENSPCIG00000015843)	ENSPCIG00000005513	ENSPCIG00000005521	STC2 (ENSPCIG00000024498)
Common wonbat	MODERN SPECIES	1087	HRH2 (ENSVURG00010024454)	ENSVURG00010024459	ENSVURG00010024461	ENSVURG00010024462	SCGB3A2 (ENSVURG00010024464)	ENSVURG00010024479	ENSVURG00010024488	SPINK6 (ENSVURG00010024490)	SPINK7 (ENSVURG00010024496)	ENSVURG00010024498	ENSVURG00010024500	ENSVURG00010024501	FBXO38 (ENSVURG00010024504)	HTR4 (ENSVURG00010000100)	SH3TC2 (ENSVURG00010000134)	ENSVURG00010000169 ##22	AFAP1L1 (ENSVURG00010000196)	GRPEL2 (ENSVURG00010000242)	PCYOX1L (ENSVURG00010000251)	IL17B (ENSVURG00010000264)	JAKMIP2 (ENSVURG00010000289)	SFXN1 (ENSVURG00010000324)	DRD1 (ENSVURG00010000352)	MSX2 (ENSVURG00010000371)	NSG2 (ENSVURG00010000391)	CPEB4 (ENSVURG00010000453)	ENSVURG00010000764	ENSVURG00010000781	STC2 (ENSVURG00010000867)	ENSVURG00010000877	BNIP1 (ENSVURG00010000889)
Wallaby	MODERN SPECIES	6908																ENSMEUG00000004636 ##22
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00940000153451.a.a.b.i	ENSGT00940000158129.f	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00990000204698	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.f ##22	ENSGT00950000182850.a.b.a.b.b.e ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153713.B.d	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000016079	ENSSHAG00000027287	ENSSHAG00000009054	ENSSHAG00000031631	ENSSHAG00000005011	ENSSHAG00000002932	ENSSHAG00000005225	ENSSHAG00000031584	ENSSHAG00000029484	ENSSHAG00000004263	ENSSHAG00000029805	FBXO38 (ENSSHAG00000013888)	HTR4 (ENSSHAG00000013571)	ADRB2 (ENSSHAG00000012084)	SH3TC2 (ENSSHAG00000011495)	ABLIM3 (ENSSHAG00000010285) ##22	AFAP1L1 (ENSSHAG00000009663)	GRPEL2 (ENSSHAG00000009365)	PCYOX1L (ENSSHAG00000031829)	ENSSHAG00000009123	ENSSHAG00000007136	ENSSHAG00000027708	DRD1 (ENSSHAG00000024944)	MSX2 (ENSSHAG00000024059)	NSG2 (ENSSHAG00000026505)	CPEB4 (ENSSHAG00000025977)	ENSSHAG00000027063	STC2 (ENSSHAG00000025128)	NKX2-5 (ENSSHAG00000008877)	BNIP1 (ENSSHAG00000028003)	CREBRF (ENSSHAG00000007714)
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00940000153451.a.a.b.i	ENSGT00940000158129.f	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00990000204698	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.f ##22	ENSGT00950000182850.a.b.a.b.b.e ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153713.B.d	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412
Diprotodontia_a	ANCESTRAL SPECIES	5	ENSGT00940000158129.f	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00980000199878.B	ENSGT00980000199878.A	ENSGT00420000029848.B	ENSGT00510000048608	ENSGT00520000060726	ENSGT00530000064225	ENSGT00940000161876	ENSGT00530000064312	ENSGT00390000013163	ENSGT00940000155983.a.a	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.f ##22	ENSGT00950000182850.a.b.a.b.b.e ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153713.B.d	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00940000154576.d	ENSGT00390000005989.a	ENSGT00940000158996
koala	MODERN SPECIES	189								ENSPCIG00000015325	ENSPCIG00000015331	ENSPCIG00000015335	ENSPCIG00000031979	FBXO38 (ENSPCIG00000014979)	HTR4 (ENSPCIG00000030236)	ADRB2 (ENSPCIG00000030235)	SH3TC2 (ENSPCIG00000030229)	ENSPCIG00000030225 ##22	ENSPCIG00000030223 ##22	AFAP1L1 (ENSPCIG00000030220)	GRPEL2 (ENSPCIG00000030218)	PCYOX1L (ENSPCIG00000016832)	IL17B (ENSPCIG00000016831)	JAKMIP2 (ENSPCIG00000006340)	SFXN1 (ENSPCIG00000014031)	DRD1 (ENSPCIG00000014024)	ENSPCIG00000009006	MSX2 (ENSPCIG00000010374)	ENSPCIG00000028337	NSG2 (ENSPCIG00000020950)	CPEB4 (ENSPCIG00000015843)	ENSPCIG00000005513	ENSPCIG00000005521
Opossum	MODERN SPECIES		ENSMODG00000005519	ENSMODG00000005544	ENSMODG00000039546	ENSMODG00000027485	ENSMODG00000025742	ENSMODG00000038772	ENSMODG00000028745	ENSMODG00000005591	ENSMODG00000044855	ENSMODG00000046749	ENSMODG00000028081	FBXO38 (ENSMODG00000005613)	HTR4 (ENSMODG00000005643)	ADRB2 (ENSMODG00000005650)	SH3TC2 (ENSMODG00000005679)	ENSMODG00000005706 ##22	AFAP1L1 (ENSMODG00000005760)	GRPEL2 (ENSMODG00000005775)	ENSMODG00000040849	PCYOX1L (ENSMODG00000005809)	IL17B (ENSMODG00000005817)	JAKMIP2 (ENSMODG00000005857)	ENSMODG00000005887	DRD1 (ENSMODG00000023683)	ENSMODG00000040970	MSX2 (ENSMODG00000005933)	ENSMODG00000023086	ENSMODG00000006007	CPEB4 (ENSMODG00000006036)	ENSMODG00000006047	STC2 (ENSMODG00000006146)
Platypus	MODERN SPECIES	85	ENSOANG00000029983	ENSOANG00000036239	ENSOANG00000036801	ENSOANG00000008949	DIAPH1 (ENSOANG00000050892)	HDAC3 (ENSOANG00000045709)	RELL2 (ENSOANG00000015093)	FCHSD1 (ENSOANG00000006838)	ARAP3 (ENSOANG00000046433)	ENSOANG00000036758	PCDH1 (ENSOANG00000050778)	ENSOANG00000044520	ENSOANG00000048043	ADRB2 (ENSOANG00000036557)	ENSOANG00000007374	ABLIM3 (ENSOANG00000013016) ##22	AFAP1L1 (ENSOANG00000051161)	ENSOANG00000037525	ENSOANG00000039902	ENSOANG00000031301	ENSOANG00000050290	ENSOANG00000039132	ENSOANG00000001780	ENSOANG00000047887	ENSOANG00000042444	ENSOANG00000047640	ENSOANG00000019856	ENSOANG00000044628	ENSOANG00000039264	ENSOANG00000047010	CTSB (ENSOANG00000013012)
Sauria	ANCESTRAL SPECIES	17	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Lepidosauria	ANCESTRAL SPECIES	15	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT01090000260260.a	ENSGT00390000012630.A
Episquamata	ANCESTRAL SPECIES	4	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000157609	ENSGT01090000260260.a	ENSGT00390000012630.A
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000157609	ENSGT01040000241711	ENSGT00390000012630.A
Elapidae	ANCESTRAL SPECIES	2	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818.p	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000157609	ENSGT01030000235731	ENSGT01010000230216
Indian cobra	MODERN SPECIES	1	STC2 (ENSNNAG00000014718)	NKX2-5 (ENSNNAG00000014737)	BNIP1 (ENSNNAG00000014746)	CREBRF (ENSNNAG00000014762)	ATP6V0E1 (ENSNNAG00000000299)	RPL26 (ENSNNAG00000000313)	ERGIC1 (ENSNNAG00000000336)	DUSP1 (ENSNNAG00000000362)	NEURL1B (ENSNNAG00000000391)	SH3PXD2B (ENSNNAG00000000415)	STK10 (ENSNNAG00000000463)	EFCAB9 (ENSNNAG00000000494)	UBTD2 (ENSNNAG00000000511)	ADRB2 (ENSNNAG00000000525)	SH3TC2 (ENSNNAG00000000550)	ABLIM3 (ENSNNAG00000000585) ##22	AFAP1L1 (ENSNNAG00000000702)	GRPEL2 (ENSNNAG00000001028)	PCYOX1L (ENSNNAG00000001092)	IL17B (ENSNNAG00000001196)	CSNK1A1 (ENSNNAG00000001230)	ARHGEF37 (ENSNNAG00000001335)	PPARGC1B (ENSNNAG00000001536)	SLC26A2 (ENSNNAG00000001567)	ENSNNAG00000001656	HTR4 (ENSNNAG00000001749)	FBXO38 (ENSNNAG00000001781)	ECHS1 (ENSNNAG00000001819)	ENSNNAG00000001839	ENSNNAG00000001865	ENSNNAG00000001880
Elapidae_a	ANCESTRAL SPECIES	11	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818.p	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000157609	ENSGT01030000235731	ENSGT01010000230216
Acanthophiinae	ANCESTRAL SPECIES	12	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818.p	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00900000143729	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000157609	ENSGT01030000235731	ENSGT01010000230216
Mainland tiger snake	MODERN SPECIES	4	STC2 (ENSNSUG00000010506)	NKX2-5 (ENSNSUG00000010507)	BNIP1 (ENSNSUG00000010509)	CREBRF (ENSNSUG00000010517)	ATP6V0E1 (ENSNSUG00000010542)	RPL26 (ENSNSUG00000010543)	ERGIC1 (ENSNSUG00000010544)	DUSP1 (ENSNSUG00000010548)	NEURL1B (ENSNSUG00000010551)	SH3PXD2B (ENSNSUG00000010565)	STK10 (ENSNSUG00000010569)	EFCAB9 (ENSNSUG00000010573)	UBTD2 (ENSNSUG00000010577)	ADRB2 (ENSNSUG00000010579)	SH3TC2 (ENSNSUG00000010581)	ABLIM3 (ENSNSUG00000010584) ##22	AFAP1L1 (ENSNSUG00000010596)	GRPEL2 (ENSNSUG00000010706)	PCYOX1L (ENSNSUG00000010707)	IL17B (ENSNSUG00000010709)	ENSNSUG00000010716	CSNK1A1 (ENSNSUG00000010717)	ENSNSUG00000010718	ARHGEF37 (ENSNSUG00000010758)	PPARGC1B (ENSNSUG00000010762)	SLC26A2 (ENSNSUG00000010802)	ENSNSUG00000010831	HTR4 (ENSNSUG00000010865)	FBXO38 (ENSNSUG00000010869)	ECHS1 (ENSNSUG00000010986)	ENSNSUG00000010989
Eastern brown snake	MODERN SPECIES	6	STC2 (ENSPTXG00000001061)	NKX2-5 (ENSPTXG00000001049)	BNIP1 (ENSPTXG00000001046)	CREBRF (ENSPTXG00000001039)	ATP6V0E1 (ENSPTXG00000001035)	RPL26 (ENSPTXG00000001032)	ERGIC1 (ENSPTXG00000001026)	DUSP1 (ENSPTXG00000001023)	NEURL1B (ENSPTXG00000001020)	SH3PXD2B (ENSPTXG00000001015)	STK10 (ENSPTXG00000000694)	EFCAB9 (ENSPTXG00000000630)	UBTD2 (ENSPTXG00000000628)	ADRB2 (ENSPTXG00000000624)	SH3TC2 (ENSPTXG00000000607)	ABLIM3 (ENSPTXG00000000575) ##22	AFAP1L1 (ENSPTXG00000000554)	GRPEL2 (ENSPTXG00000000539)	PCYOX1L (ENSPTXG00000000528)	IL17B (ENSPTXG00000000473)	CSNK1A1 (ENSPTXG00000000431)	ENSPTXG00000000279	ARHGEF37 (ENSPTXG00000000222)	PPARGC1B (ENSPTXG00000000068)	SLC26A2 (ENSPTXG00000000054)	ENSPTXG00000009392	HTR4 (ENSPTXG00000009391)	FBXO38 (ENSPTXG00000009390)	ECHS1 (ENSPTXG00000009389)	ENSPTXG00000009388	ENSPTXG00000009387
Blue-lipped sea krait	MODERN SPECIES	9253																ABLIM3 (ENSLLTG00000011608) ##22
Lizard	MODERN SPECIES	1	ATP6V0E1 (ENSACAG00000015183)	ENSACAG00000015187	ERGIC1 (ENSACAG00000015210)	DUSP1 (ENSACAG00000015246)	ENSACAG00000039578	ENSACAG00000015261	SH3PXD2B (ENSACAG00000042684)	ENSACAG00000036124	STK10 (ENSACAG00000015294)	ENSACAG00000015404	UBTD2 (ENSACAG00000015415)	ENSACAG00000038795	ADRB2 (ENSACAG00000015418)	SH3TC2 (ENSACAG00000015429)	ENSACAG00000039080	ABLIM3 (ENSACAG00000015469) ##22	AFAP1L1 (ENSACAG00000015542)	GRPEL2 (ENSACAG00000015596)	PCYOX1L (ENSACAG00000015622)	IL17B (ENSACAG00000015644)	CSNK1A1 (ENSACAG00000015659)	ENSACAG00000036989	ENSACAG00000028117	ARHGEF37 (ENSACAG00000015707)	ENSACAG00000028909	PPARGC1B (ENSACAG00000015737)	SLC26A2 (ENSACAG00000015760)	ENSACAG00000035366	ENSACAG00000015764	ENSACAG00000015809	ENSACAG00000025449
Laterata	ANCESTRAL SPECIES	1	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00940000157609	ENSGT01090000260260.a	ENSGT00390000012630.A	ENSGT00940000158048
Common wall lizard	MODERN SPECIES	10	NKX2-5 (ENSPMRG00000010802)	ENSPMRG00000010791	BNIP1 (ENSPMRG00000010790)	CREBRF (ENSPMRG00000010780)	ENSPMRG00000010776	ATP6V0E1 (ENSPMRG00000010773)	RPL26 (ENSPMRG00000015148)	ERGIC1 (ENSPMRG00000015142)	DUSP1 (ENSPMRG00000015139)	NEURL1B (ENSPMRG00000015130)	SH3PXD2B (ENSPMRG00000015116)	EFCAB9 (ENSPMRG00000015112)	STK10 (ENSPMRG00000015086)	ADRB2 (ENSPMRG00000015071)	SH3TC2 (ENSPMRG00000015037)	ABLIM3 (ENSPMRG00000014945) ##22	AFAP1L1 (ENSPMRG00000014884)	ENSPMRG00000014867	GRPEL2 (ENSPMRG00000014847)	PCYOX1L (ENSPMRG00000014840)	IL17B (ENSPMRG00000014838)	ENSPMRG00000014832	CSNK1A1 (ENSPMRG00000014794)	ARHGEF37 (ENSPMRG00000014779)	PPARGC1B (ENSPMRG00000014770)	SLC26A2 (ENSPMRG00000014766)	ENSPMRG00000014761	HTR4 (ENSPMRG00000014752)	FBXO38 (ENSPMRG00000014703)	ECHS1 (ENSPMRG00000014691)	ENSPMRG00000014686
Argentine black and white tegu	MODERN SPECIES	1	NKX2-5 (ENSSMRG00000000222)	BNIP1 (ENSSMRG00000000231)	CREBRF (ENSSMRG00000000260)	ATP6V0E1 (ENSSMRG00000000286)	RPL26 (ENSSMRG00000000294)	ERGIC1 (ENSSMRG00000000312)	DUSP1 (ENSSMRG00000000325)	NEURL1B (ENSSMRG00000000401)	SH3PXD2B (ENSSMRG00000000416)	STK10 (ENSSMRG00000000484)	EFCAB9 (ENSSMRG00000000510)	UBTD2 (ENSSMRG00000000513)	ENSSMRG00000000551	ADRB2 (ENSSMRG00000000556)	SH3TC2 (ENSSMRG00000000562)	ABLIM3 (ENSSMRG00000000668) ##22	AFAP1L1 (ENSSMRG00000000709)	GRPEL2 (ENSSMRG00000000756)	PCYOX1L (ENSSMRG00000000762)	IL17B (ENSSMRG00000000774)	CSNK1A1 (ENSSMRG00000000796)	ENSSMRG00000000841	ARHGEF37 (ENSSMRG00000000923)	PPARGC1B (ENSSMRG00000001032)	SLC26A2 (ENSSMRG00000001051)	ENSSMRG00000001136	HTR4 (ENSSMRG00000001233)	FBXO38 (ENSSMRG00000001259)	ECHS1 (ENSSMRG00000001277)	ENSSMRG00000001283	ENSSMRG00000001289
tuatara	MODERN SPECIES	1232										SH3PXD2B (ENSSPUG00000003640)	STK10 (ENSSPUG00000003630)	EFCAB9 (ENSSPUG00000003620)	UBTD2 (ENSSPUG00000003618)	ADRB2 (ENSSPUG00000003608)	SH3TC2 (ENSSPUG00000003515)	ABLIM3 (ENSSPUG00000003470) ##22	AFAP1L1 (ENSSPUG00000003405)	GRPEL2 (ENSSPUG00000003260)	PCYOX1L (ENSSPUG00000003214)	IL17B (ENSSPUG00000003200)
Archelosauria	ANCESTRAL SPECIES	15	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944
Archosauria	ANCESTRAL SPECIES	17	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944
Australian saltwater crocodile	MODERN SPECIES	34	STC2 (ENSCPRG00005007937)	NKX2-5 (ENSCPRG00005007932)	BNIP1 (ENSCPRG00005007919)	CREBRF (ENSCPRG00005007915)	ATP6V0E1 (ENSCPRG00005007904)	RPL26 (ENSCPRG00005007902)	ERGIC1 (ENSCPRG00005007890)	DUSP1 (ENSCPRG00005007884)	NEURL1B (ENSCPRG00005007875)	SH3PXD2B (ENSCPRG00005007836)	STK10 (ENSCPRG00005007810)	EFCAB9 (ENSCPRG00005007806)	UBTD2 (ENSCPRG00005007804)	ADRB2 (ENSCPRG00005007778)	SH3TC2 (ENSCPRG00005007768)	ABLIM3 (ENSCPRG00005007745) ##22	AFAP1L1 (ENSCPRG00005007715)	GRPEL2 (ENSCPRG00005007705)	PCYOX1L (ENSCPRG00005007700)	IL17B (ENSCPRG00005007697)	CSNK1A1 (ENSCPRG00005007410)	ENSCPRG00005007347	ARHGEF37 (ENSCPRG00005007253)	PPARGC1B (ENSCPRG00005007224)	ENSCPRG00005007214	ENSCPRG00005007213	SLC26A2 (ENSCPRG00005007205)	ENSCPRG00005007158	HTR4 (ENSCPRG00005007148)	FBXO38 (ENSCPRG00005007108)	ENSCPRG00005007099
Aves	ANCESTRAL SPECIES	15	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
African ostrich	MODERN SPECIES	151			NKX2-5 (ENSSCUG00000002861)	BNIP1 (ENSSCUG00000002862)	CREBRF (ENSSCUG00000002864)	ENSSCUG00000002866	RPL26 (ENSSCUG00000002868)	ERGIC1 (ENSSCUG00000002870)	DUSP1 (ENSSCUG00000002873)	NEURL1B (ENSSCUG00000002876)	SH3PXD2B (ENSSCUG00000002881)	STK10 (ENSSCUG00000002883)	UBTD2 (ENSSCUG00000002885)	ADRB2 (ENSSCUG00000002887)	SH3TC2 (ENSSCUG00000002891)	ABLIM3 (ENSSCUG00000002892) ##22	AFAP1L1 (ENSSCUG00000002902)	GRPEL2 (ENSSCUG00000002905)	PCYOX1L (ENSSCUG00000002906)	IL17B (ENSSCUG00000002907)	ENSSCUG00000002909	ENSSCUG00000002910	ARHGEF37 (ENSSCUG00000002913)	CD74 (ENSSCUG00000002916)	ENSSCUG00000002917	ARSI (ENSSCUG00000002918)	ENSSCUG00000002919	ENSSCUG00000002920	SLC6A7 (ENSSCUG00000002922)	CDX1 (ENSSCUG00000002924)	PDGFRB (ENSSCUG00000002926)
Neognathae	ANCESTRAL SPECIES	14	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Galloanserae	ANCESTRAL SPECIES	14	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Anatidae	ANCESTRAL SPECIES	52																ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000237810	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944
Duck	MODERN SPECIES	5																ABLIM3 (ENSAPLG00000012449) ##22	AFAP1L1 (ENSAPLG00000011997)	ENSAPLG00000011936	PCYOX1L (ENSAPLG00000011797)	IL17B (ENSAPLG00000011795)	CSNK1A1 (ENSAPLG00000010571)	ARHGEF37 (ENSAPLG00000010419)	PPARGC1B (ENSAPLG00000009977)	SLC26A2 (ENSAPLG00000009889)	ENSAPLG00000027437	HTR4 (ENSAPLG00000009505)	FBXO38 (ENSAPLG00000009306)	ENSAPLG00000018464	IL12B (ENSAPLG00000009092)	ADRA1B (ENSAPLG00000009090)	TTC1 (ENSAPLG00000008791)
Pink-footed goose	MODERN SPECIES	415																ABLIM3 (ENSABRG00000011141) ##22	AFAP1L1 (ENSABRG00000011185)	GRPEL2 (ENSABRG00000011218)	PCYOX1L (ENSABRG00000011231)	IL17B (ENSABRG00000011243)	CSNK1A1 (ENSABRG00000011274)	ARHGEF37 (ENSABRG00000011303)	PPARGC1B (ENSABRG00000011312)	ENSABRG00000011319
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b.g ##22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b.g ##22
Turkey	MODERN SPECIES	6	NSG2 (ENSMGAG00000003692)	CPEB4 (ENSMGAG00000003660)	ENSMGAG00000003652	STC2 (ENSMGAG00000019072)	NKX2-5 (ENSMGAG00000021311)	BNIP1 (ENSMGAG00000003611)	CREBRF (ENSMGAG00000003597)	ENSMGAG00000003585	ERGIC1 (ENSMGAG00000003565)	DUSP1 (ENSMGAG00000003557)	ENSMGAG00000003546	SH3PXD2B (ENSMGAG00000003508)	ENSMGAG00000003464	ENSMGAG00000003447	ADRB2 (ENSMGAG00000022062)	ENSMGAG00000003360 ##22	AFAP1L1 (ENSMGAG00000003323)	PCYOX1L (ENSMGAG00000003301)	ENSMGAG00000021310	CSNK1A1 (ENSMGAG00000003239)	ARHGEF37 (ENSMGAG00000003214)	ENSMGAG00000003134 ##22	ENSMGAG00000022852	SLC26A2 (ENSMGAG00000003118)	ENSMGAG00000003112	ENSMGAG00000003088	ENSMGAG00000003033	ENSMGAG00000018749	IL12B (ENSMGAG00000003001)	ADRA1B (ENSMGAG00000002990)	ENSMGAG00000015441
Phasianidae	ANCESTRAL SPECIES	14	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.h ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Japanese quail	MODERN SPECIES	4	ENSCJPG00005008838	STC2 (ENSCJPG00005008836)	NKX2-5 (ENSCJPG00005008835)	BNIP1 (ENSCJPG00005008834)	CREBRF (ENSCJPG00005008833)	ATP6V0E1 (ENSCJPG00005008830)	RPL26 (ENSCJPG00005008829)	ERGIC1 (ENSCJPG00005008827)	DUSP1 (ENSCJPG00005008826)	NEURL1B (ENSCJPG00005008825)	SH3PXD2B (ENSCJPG00005008824)	STK10 (ENSCJPG00005008823)	UBTD2 (ENSCJPG00005008822)	ADRB2 (ENSCJPG00005008819)	SH3TC2 (ENSCJPG00005008812)	ABLIM3 (ENSCJPG00005008809) ##22	AFAP1L1 (ENSCJPG00005008808)	GRPEL2 (ENSCJPG00005008807)	PCYOX1L (ENSCJPG00005008806)	IL17B (ENSCJPG00005008805)	CSNK1A1 (ENSCJPG00005008802)	ARHGEF37 (ENSCJPG00005008801)	PPARGC1B (ENSCJPG00005008794)	ENSCJPG00005008791	SLC26A2 (ENSCJPG00005008790)	ENSCJPG00005008787	HTR4 (ENSCJPG00005008783)	FBXO38 (ENSCJPG00005008781)	ENSCJPG00005008780	ADRA1B (ENSCJPG00005008779)	IL12B (ENSCJPG00005008776)
Phasianidae_b	ANCESTRAL SPECIES	18	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.h ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Chicken	MODERN SPECIES	4	ENSGALG00010009378	STC2 (ENSGALG00010009346)	NKX2-5 (ENSGALG00010009324)	BNIP1 (ENSGALG00010009311)	CREBRF (ENSGALG00010009256)	ATP6V0E1 (ENSGALG00010009228)	RPL26L1 (ENSGALG00010009170)	ERGIC1 (ENSGALG00010009117)	DUSP1 (ENSGALG00010008227)	NEURL1B (ENSGALG00010012391)	SH3PXD2B (ENSGALG00010012382)	STK10 (ENSGALG00010012358)	UBTD2 (ENSGALG00010012327)	ADRB2 (ENSGALG00010012314)	SH3TC2 (ENSGALG00010012312)	ABLIM3 (ENSGALG00010012297) ##22	AFAP1L1 (ENSGALG00010011745)	GRPEL2 (ENSGALG00010011784)	PCYOX1L (ENSGALG00010011764)	IL17B (ENSGALG00010011754)	CSNK1A1 (ENSGALG00010011991)	ARHGEF37 (ENSGALG00010008217)	PPARGC1B (ENSGALG00010008209)	ENSGALG00010008195	ENSGALG00010008187	SLC26A2 (ENSGALG00010008174)	ENSGALG00010008173	HTR4 (ENSGALG00010008169)	FBXO38 (ENSGALG00010011647)	ENSGALG00010009424	IL12B (ENSGALG00010009374)
Turkey	MODERN SPECIES	6	CREBRF (ENSMGAG00000003597)	ENSMGAG00000003585	ERGIC1 (ENSMGAG00000003565)	DUSP1 (ENSMGAG00000003557)	ENSMGAG00000003546	SH3PXD2B (ENSMGAG00000003508)	ENSMGAG00000003464	ENSMGAG00000003447	ADRB2 (ENSMGAG00000022062)	ENSMGAG00000003360 ##22	AFAP1L1 (ENSMGAG00000003323)	PCYOX1L (ENSMGAG00000003301)	ENSMGAG00000021310	CSNK1A1 (ENSMGAG00000003239)	ARHGEF37 (ENSMGAG00000003214)	ENSMGAG00000003134 ##22	ENSMGAG00000022852	SLC26A2 (ENSMGAG00000003118)	ENSMGAG00000003112	ENSMGAG00000003088	ENSMGAG00000003033	ENSMGAG00000018749	IL12B (ENSMGAG00000003001)	ADRA1B (ENSMGAG00000002990)	ENSMGAG00000015441	TTC1 (ENSMGAG00000002950)	CCNJL (ENSMGAG00000002930)	C1QTNF2 (ENSMGAG00000002923)	SLU7 (ENSMGAG00000002882)	ENSMGAG00000017583	ATP10B (ENSMGAG00000002806)
Neognathae_b	ANCESTRAL SPECIES	16	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Neognathae_c	ANCESTRAL SPECIES	19	ENSGT00940000154998.a.a	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Kakapo	MODERN SPECIES	6	CPEB4 (ENSSHBG00005016128)	ENSSHBG00005016151	STC2 (ENSSHBG00005016156)	NKX2-5 (ENSSHBG00005016162)	BNIP1 (ENSSHBG00005016165)	CREBRF (ENSSHBG00005016175)	RPL26 (ENSSHBG00005016182)	ERGIC1 (ENSSHBG00005016189)	DUSP1 (ENSSHBG00005016192)	NEURL1B (ENSSHBG00005016201)	SH3PXD2B (ENSSHBG00005016219)	STK10 (ENSSHBG00005016343)	UBTD2 (ENSSHBG00005017971)	ADRB2 (ENSSHBG00005017975)	SH3TC2 (ENSSHBG00005017984)	ABLIM3 (ENSSHBG00005018000) ##22	AFAP1L1 (ENSSHBG00005018003)	GRPEL2 (ENSSHBG00005018006)	PCYOX1L (ENSSHBG00005018008)	IL17B (ENSSHBG00005018010)	CSNK1A1 (ENSSHBG00005018017)	ENSSHBG00005018025	ARHGEF37 (ENSSHBG00005018029)	PPARGC1B (ENSSHBG00005018033)	ENSSHBG00005018047	ENSSHBG00005018051	SLC26A2 (ENSSHBG00005018055)	ENSSHBG00005018064	HTR4 (ENSSHBG00005018183)	FBXO38 (ENSSHBG00005018193)	ENSSHBG00005018201
Golden eagle	MODERN SPECIES	14	ENSACCG00020012917	STC2 (ENSACCG00020012896)	NKX2-5 (ENSACCG00020012874)	BNIP1 (ENSACCG00020012856)	CREBRF (ENSACCG00020012815)	RPL26 (ENSACCG00020012774)	ERGIC1 (ENSACCG00020012710)	ENSACCG00020012686	DUSP1 (ENSACCG00020012672)	NEURL1B (ENSACCG00020012648)	SH3PXD2B (ENSACCG00020012626)	STK10 (ENSACCG00020012579)	UBTD2 (ENSACCG00020012552)	ADRB2 (ENSACCG00020012531)	SH3TC2 (ENSACCG00020012431)	ABLIM3 (ENSACCG00020012238) ##22	AFAP1L1 (ENSACCG00020012061)	GRPEL2 (ENSACCG00020011972)	PCYOX1L (ENSACCG00020011932)	IL17B (ENSACCG00020011884)	CSNK1A1 (ENSACCG00020011837)	ARHGEF37 (ENSACCG00020011768)	PPARGC1B (ENSACCG00020011712)	ENSACCG00020011667	ENSACCG00020011626	SLC26A2 (ENSACCG00020011604)	ENSACCG00020011572	HTR4 (ENSACCG00020016661)	FBXO38 (ENSACCG00020016658)	ENSACCG00020016655	IL12B (ENSACCG00020016647)
Passeriformes	ANCESTRAL SPECIES	14	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Great tit	MODERN SPECIES	4	CPEB4 (ENSPMJG00000006528)	ENSPMJG00000006523	STC2 (ENSPMJG00000006490)	NKX2-5 (ENSPMJG00000006487)	BNIP1 (ENSPMJG00000006485)	CREBRF (ENSPMJG00000006480)	RPL26 (ENSPMJG00000006464)	ERGIC1 (ENSPMJG00000006461)	DUSP1 (ENSPMJG00000006458)	NEURL1B (ENSPMJG00000006456)	SH3PXD2B (ENSPMJG00000006447)	STK10 (ENSPMJG00000006445)	UBTD2 (ENSPMJG00000006444)	ADRB2 (ENSPMJG00000006425)	SH3TC2 (ENSPMJG00000006424)	ABLIM3 (ENSPMJG00000006419) ##22	AFAP1L1 (ENSPMJG00000006405)	GRPEL2 (ENSPMJG00000006401)	PCYOX1L (ENSPMJG00000006393)	IL17B (ENSPMJG00000006386)	CSNK1A1 (ENSPMJG00000006380)	ARHGEF37 (ENSPMJG00000006361)	PPARGC1B (ENSPMJG00000006359)	ENSPMJG00000006357	ENSPMJG00000006353	ENSPMJG00000006348	SLC26A2 (ENSPMJG00000006346)	ENSPMJG00000006344	HTR4 (ENSPMJG00000006340)	FBXO38 (ENSPMJG00000006329)	ENSPMJG00000006326
Passeriformes_d	ANCESTRAL SPECIES	15	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Flycatcher	MODERN SPECIES	4	ENSFALG00000008811	STC2 (ENSFALG00000025551)	NKX2-5 (ENSFALG00000008813)	ENSFALG00000008815	CREBRF (ENSFALG00000008816)	ATP6V0E1 (ENSFALG00000008817)	ENSFALG00000008818	ERGIC1 (ENSFALG00000008820)	DUSP1 (ENSFALG00000008823)	ENSFALG00000008824	SH3PXD2B (ENSFALG00000008827)	ENSFALG00000008830	ENSFALG00000008833	ADRB2 (ENSFALG00000014433)	SH3TC2 (ENSFALG00000008835)	ABLIM3 (ENSFALG00000008837) ##22	AFAP1L1 (ENSFALG00000008840)	GRPEL2 (ENSFALG00000008841)	PCYOX1L (ENSFALG00000008842)	IL17B (ENSFALG00000025253)	ENSFALG00000025781	CSNK1A1 (ENSFALG00000028539)	ENSFALG00000025562	ENSFALG00000008853	ARHGEF37 (ENSFALG00000008850)	PPARGC1B (ENSFALG00000008858)	ENSFALG00000026287	ENSFALG00000028330	ENSFALG00000025241	SLC26A2 (ENSFALG00000022993)	ENSFALG00000026449
Passeriformes_g	ANCESTRAL SPECIES	15	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Medium ground finch	MODERN SPECIES	11	CPEB4 (ENSGFOG00000006967)	STC2 (ENSGFOG00000006981)	NKX2-5 (ENSGFOG00000006986)	BNIP1 (ENSGFOG00000006991)	CREBRF (ENSGFOG00000006997)	ATP6V0E1 (ENSGFOG00000007006)	RPL26 (ENSGFOG00000007011)	ERGIC1 (ENSGFOG00000007022)	DUSP1 (ENSGFOG00000007032)	NEURL1B (ENSGFOG00000007039)	SH3PXD2B (ENSGFOG00000007045)	STK10 (ENSGFOG00000007164)	UBTD2 (ENSGFOG00000010545)	ADRB2 (ENSGFOG00000010549)	ENSGFOG00000010556	ABLIM3 (ENSGFOG00000010564) ##22	AFAP1L1 (ENSGFOG00000010583)	GRPEL2 (ENSGFOG00000010597)	PCYOX1L (ENSGFOG00000010603)	IL17B (ENSGFOG00000010605)	ENSGFOG00000010610	CSNK1A1 (ENSGFOG00000010614)	ARHGEF37 (ENSGFOG00000010621)	PPARGC1B (ENSGFOG00000010638)	ENSGFOG00000010644	ENSGFOG00000010647	SLC26A2 (ENSGFOG00000010656)	ENSGFOG00000010669	HTR4 (ENSGFOG00000010835)	FBXO38 (ENSGFOG00000010861)	IL12B (ENSGFOG00000010875)
Passeroidea	ANCESTRAL SPECIES	15	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213
Zebra finch	MODERN SPECIES	4	ENSTGUG00000000324	STC2 (ENSTGUG00000029550)	NKX2-5 (ENSTGUG00000020969)	BNIP1 (ENSTGUG00000000316)	CREBRF (ENSTGUG00000000314)	ENSTGUG00000026118	RPL26 (ENSTGUG00000000309)	ERGIC1 (ENSTGUG00000000300)	DUSP1 (ENSTGUG00000000299)	NEURL1B (ENSTGUG00000000298)	SH3PXD2B (ENSTGUG00000022640)	STK10 (ENSTGUG00000000289)	UBTD2 (ENSTGUG00000029278)	ADRB2 (ENSTGUG00000000286)	SH3TC2 (ENSTGUG00000000277)	ABLIM3 (ENSTGUG00000000269) ##22	AFAP1L1 (ENSTGUG00000000263)	GRPEL2 (ENSTGUG00000027926)	PCYOX1L (ENSTGUG00000000252)	IL17B (ENSTGUG00000000251)	CSNK1A1 (ENSTGUG00000000243)	ARHGEF37 (ENSTGUG00000000241)	PPARGC1B (ENSTGUG00000000232)	ENSTGUG00000020371	SLC26A2 (ENSTGUG00000000228)	ENSTGUG00000000226	HTR4 (ENSTGUG00000000218)	FBXO38 (ENSTGUG00000000212)	ENSTGUG00000027639	IL12B (ENSTGUG00000000209)	ADRA1B (ENSTGUG00000000206)
Common canary	MODERN SPECIES	16	RGS14 (ENSSCAG00000000049)	ENSSCAG00000000054	LMAN2 (ENSSCAG00000000058)	N4BP3 (ENSSCAG00000000064)	NHP2 (ENSSCAG00000000066)	ENSSCAG00000000068	BRD8 (ENSSCAG00000000078)	KIF20A (ENSSCAG00000000091)	SFXN1 (ENSSCAG00000000132)	NEURL1B (ENSSCAG00000000152)	SH3PXD2B (ENSSCAG00000000168)	STK10 (ENSSCAG00000000397)	UBTD2 (ENSSCAG00000001079)	ADRB2 (ENSSCAG00000001083)	SH3TC2 (ENSSCAG00000001099)	ABLIM3 (ENSSCAG00000001170) ##22	AFAP1L1 (ENSSCAG00000001363)	GRPEL2 (ENSSCAG00000001377)	PCYOX1L (ENSSCAG00000001381)	IL17B (ENSSCAG00000001387)	CSNK1A1 (ENSSCAG00000001399)	ARHGEF37 (ENSSCAG00000001410)	PPARGC1B (ENSSCAG00000001426)	ENSSCAG00000001456	SLC26A2 (ENSSCAG00000001463)	ENSSCAG00000001469	HTR4 (ENSSCAG00000001475)	FBXO38 (ENSSCAG00000001522)	ENSSCAG00000001607	IL12B (ENSSCAG00000001611)	ADRA1B (ENSSCAG00000001616)
Cryptodira	ANCESTRAL SPECIES	15	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944
Chinese turtle	MODERN SPECIES	2220	STC2 (ENSPSIG00000015246)	NKX2-5 (ENSPSIG00000014981)	BNIP1 (ENSPSIG00000014624)	CREBRF (ENSPSIG00000013820)	ATP6V0E1 (ENSPSIG00000013593)	RPL26 (ENSPSIG00000013153)	ERGIC1 (ENSPSIG00000011786)	DUSP1 (ENSPSIG00000011093)	NEURL1B (ENSPSIG00000010315)	SH3PXD2B (ENSPSIG00000010303)	STK10 (ENSPSIG00000009241)	EFCAB9 (ENSPSIG00000009216)	UBTD2 (ENSPSIG00000009210)	ADRB2 (ENSPSIG00000008710)	SH3TC2 (ENSPSIG00000007989)	ABLIM3 (ENSPSIG00000006198) ##22	AFAP1L1 (ENSPSIG00000015614)	GRPEL2 (ENSPSIG00000015124)	PCYOX1L (ENSPSIG00000013871)	IL17B (ENSPSIG00000013786)	CSNK1A1 (ENSPSIG00000012179)	ENSPSIG00000000250	ARHGEF37 (ENSPSIG00000011066)	PPARGC1B (ENSPSIG00000008358)	SLC26A2 (ENSPSIG00000007690)	HTR4 (ENSPSIG00000006016)	FBXO38 (ENSPSIG00000005569)	IL12B (ENSPSIG00000018025)	ADRA1B (ENSPSIG00000017993)	ARX (ENSPSIG00000017365)	IL1RAPL1 (ENSPSIG00000016810)
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT01000000218554	ENSGT00940000165772.b	ENSGT00960000189299
Testudinidae	ANCESTRAL SPECIES	16	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT01000000218554	ENSGT00940000165772.b	ENSGT00960000189299
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	22	BNIP1 (ENSGEVG00005009102)	CREBRF (ENSGEVG00005009119)	ATP6V0E1 (ENSGEVG00005009147)	RPL26 (ENSGEVG00005009170)	ERGIC1 (ENSGEVG00005009233)	DUSP1 (ENSGEVG00005009360)	NEURL1B (ENSGEVG00005009384)	ENSGEVG00005009402	ENSGEVG00005009428	STK10 (ENSGEVG00005009569)	EFCAB9 (ENSGEVG00005009608)	UBTD2 (ENSGEVG00005009650)	ADRB2 (ENSGEVG00005009673)	SH3TC2 (ENSGEVG00005009752)	ENSGEVG00005009824 ##22	ENSGEVG00005010177 ##22	AFAP1L1 (ENSGEVG00005010272)	GRPEL2 (ENSGEVG00005010390)	PCYOX1L (ENSGEVG00005010405)	IL17B (ENSGEVG00005010426)	CSNK1A1 (ENSGEVG00005010496)	ENSGEVG00005010620	ARHGEF37 (ENSGEVG00005010677)	PPARGC1B (ENSGEVG00005010716)	ENSGEVG00005010816	SLC26A2 (ENSGEVG00005010871)	HTR4 (ENSGEVG00005010911)	FBXO38 (ENSGEVG00005011028)	ENSGEVG00005011127	ENSGEVG00005011162	ENSGEVG00005011208
Goode s thornscrub tortoise	MODERN SPECIES	22	NKX2-5 (ENSGEVG00005009080)	BNIP1 (ENSGEVG00005009102)	CREBRF (ENSGEVG00005009119)	ATP6V0E1 (ENSGEVG00005009147)	RPL26 (ENSGEVG00005009170)	ERGIC1 (ENSGEVG00005009233)	DUSP1 (ENSGEVG00005009360)	NEURL1B (ENSGEVG00005009384)	ENSGEVG00005009402	ENSGEVG00005009428	STK10 (ENSGEVG00005009569)	EFCAB9 (ENSGEVG00005009608)	UBTD2 (ENSGEVG00005009650)	ADRB2 (ENSGEVG00005009673)	SH3TC2 (ENSGEVG00005009752)	ENSGEVG00005009824 ##22	ENSGEVG00005010177 ##22	AFAP1L1 (ENSGEVG00005010272)	GRPEL2 (ENSGEVG00005010390)	PCYOX1L (ENSGEVG00005010405)	IL17B (ENSGEVG00005010426)	CSNK1A1 (ENSGEVG00005010496)	ENSGEVG00005010620	ARHGEF37 (ENSGEVG00005010677)	PPARGC1B (ENSGEVG00005010716)	ENSGEVG00005010816	SLC26A2 (ENSGEVG00005010871)	HTR4 (ENSGEVG00005010911)	FBXO38 (ENSGEVG00005011028)	ENSGEVG00005011127	ENSGEVG00005011162
Abingdon island giant tortoise	MODERN SPECIES	1807															SH3TC2 (ENSCABG00000012525)	ABLIM3 (ENSCABG00000012519) ##22	AFAP1L1 (ENSCABG00000012310)	GRPEL2 (ENSCABG00000012309)	PCYOX1L (ENSCABG00000012307)	IL17B (ENSCABG00000012306)	CSNK1A1 (ENSCABG00000012302)	ENSCABG00000012300	ENSCABG00000012299	PPARGC1B (ENSCABG00000012296)	ENSCABG00000012295	SLC26A2 (ENSCABG00000012294)	HTR4 (ENSCABG00000012290)	FBXO38 (ENSCABG00000012286)	ENSCABG00000012282	ENSCABG00000012280	IL12B (ENSCABG00000012277)
Emydidae	ANCESTRAL SPECIES	11	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866	ENSGT00390000014165.c.a.a	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT00940000158396	ENSGT00940000156818	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00940000153700	ENSGT00940000163999.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT01030000234583.a.b.b.f.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00390000013163	ENSGT01000000218554	ENSGT00940000165772.b	ENSGT00960000189299
Three-toed box turtle	MODERN SPECIES	177									DUSP1 (ENSTMTG00000013458)	NEURL1B (ENSTMTG00000013469)	SH3PXD2B (ENSTMTG00000013489)	STK10 (ENSTMTG00000013536)	UBTD2 (ENSTMTG00000013558)	ADRB2 (ENSTMTG00000013564)	SH3TC2 (ENSTMTG00000013579)	ABLIM3 (ENSTMTG00000013687) ##22	AFAP1L1 (ENSTMTG00000014767)	GRPEL2 (ENSTMTG00000014920)	PCYOX1L (ENSTMTG00000014925)	IL17B (ENSTMTG00000014942)	CSNK1A1 (ENSTMTG00000014973)	ENSTMTG00000014993	ARHGEF37 (ENSTMTG00000015020)	PPARGC1B (ENSTMTG00000015044)	ENSTMTG00000015086	SLC26A2 (ENSTMTG00000015109)	HTR4 (ENSTMTG00000015116)	FBXO38 (ENSTMTG00000015153)	ENSTMTG00000015184	ENSTMTG00000015196	ENSTMTG00000015207
painted turtle	MODERN SPECIES	2385	NKX2-5 (ENSCPBG00000007563)	BNIP1 (ENSCPBG00000007566)	CREBRF (ENSCPBG00000007577)	ATP6V0E1 (ENSCPBG00000007589)	RPL26 (ENSCPBG00000007593)	ERGIC1 (ENSCPBG00000007601)	ENSCPBG00000007606	DUSP1 (ENSCPBG00000007611)	NEURL1B (ENSCPBG00000007630)	SH3PXD2B (ENSCPBG00000007639)	STK10 (ENSCPBG00000007660)	EFCAB9 (ENSCPBG00000007673)	UBTD2 (ENSCPBG00000007679)	ADRB2 (ENSCPBG00000007688)	SH3TC2 (ENSCPBG00000007700)	ABLIM3 (ENSCPBG00000007739) ##22	AFAP1L1 (ENSCPBG00000007799)	GRPEL2 (ENSCPBG00000007831)	PCYOX1L (ENSCPBG00000007839)	IL17B (ENSCPBG00000007844)	CSNK1A1 (ENSCPBG00000007854)	ENSCPBG00000007862	ARHGEF37 (ENSCPBG00000007872)	PPARGC1B (ENSCPBG00000007891)	ENSCPBG00000007898	SLC26A2 (ENSCPBG00000007902)	ENSCPBG00000007906	HTR4 (ENSCPBG00000007919)	FBXO38 (ENSCPBG00000007955)	ENSCPBG00000007970	ENSCPBG00000007976
Actinopterygii	ANCESTRAL SPECIES	103	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650	ENSGT00950000182859.A.a.b.a.b	ENSGT00950000182932.A.b.a.a.a	ENSGT00940000156141.C	ENSGT00950000182859.A.a.a.a	ENSGT00950000182859.A.a.b.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b	ENSGT00390000011206.b	ENSGT00940000160854	ENSGT00390000014165	ENSGT00940000156866	ENSGT00390000007125.b	ENSGT00390000014412	ENSGT00940000158996	ENSGT00390000005989.a	ENSGT00940000154979	ENSGT00940000154998.a.a	ENSGT00390000000483.a.a	ENSGT00940000159824	ENSGT00940000155857.f
Reedfish	MODERN SPECIES	2	gabrb2a (ENSECRG00000013694)	mgst3a (ENSECRG00000013670)	ATP10B (ENSECRG00000013627)	ENSECRG00000013610	SH3PXD2B (ENSECRG00000013596)	stk10 (ENSECRG00000013572)	STK32A (ENSECRG00000013551)	dpysl3 (ENSECRG00000013511)	JAKMIP2 (ENSECRG00000013354)	sfxn1 (ENSECRG00000013247)	ENSECRG00000013178	ENSECRG00000013124	ubtd2 (ENSECRG00000013076)	adrb2a (ENSECRG00000013059)	SH3TC2 (ENSECRG00000013029)	ablim3 (ENSECRG00000012996) ##22	afap1l1a (ENSECRG00000012954)	grpel2 (ENSECRG00000012927)	PCYOX1L (ENSECRG00000012911)	IL17B (ENSECRG00000012898)	rpl26 (ENSECRG00000012885)	ATP6V0E1 (ENSECRG00000012875)	CREBRF (ENSECRG00000012865)	BNIP1 (ENSECRG00000012851)	BNIP1 (ENSECRG00000012841)	nkx2.5 (ENSECRG00000012831)	stc2a (ENSECRG00000012818)	BOD1 (ENSECRG00000012812)	CPEB4 (ENSECRG00000012778)	nsg2 (ENSECRG00000012742)	MSX2 (ENSECRG00000012727)
Neopterygii	ANCESTRAL SPECIES	24	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650	ENSGT00950000182859.A.a.b.a.b	ENSGT00950000182932.A.b.a.b	ENSGT00940000156141.C	ENSGT00950000182859.A.a.a.a	ENSGT00950000182859.A.a.b.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A	ENSGT00390000007501	ENSGT00940000156641	ENSGT00940000159538.g	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a	ENSGT00390000005589.a.b
Spotted gar	MODERN SPECIES	672	ppp2r2bb (ENSLOCG00000009212)	GPR151 (ENSLOCG00000018302)	ENSLOCG00000009227	ADAM19 (ENSLOCG00000009244)	thg1l (ENSLOCG00000009255)	LSM11 (ENSLOCG00000009264)	clint1a (ENSLOCG00000009271)	ebf3a (ENSLOCG00000009282)	rnf145b (ENSLOCG00000009293)	ublcp1 (ENSLOCG00000009305)	il12ba (ENSLOCG00000009317)	EFCAB9 (ENSLOCG00000009328)	ubtd2 (ENSLOCG00000009340)	adrb2a (ENSLOCG00000009352)	SH3TC2 (ENSLOCG00000009362)	ablim3 (ENSLOCG00000009374) ##22	afap1l1a (ENSLOCG00000009385)	grpel2 (ENSLOCG00000009404)	slu7 (ENSLOCG00000009410)	C1QTNF2 (ENSLOCG00000009423)	ccnjl (ENSLOCG00000009433)	fabp6 (ENSLOCG00000009437)	PWWP2A (ENSLOCG00000009452)	ttc1 (ENSLOCG00000009457)	adra1bb (ENSLOCG00000009467)	ENSLOCG00000009475	ENSLOCG00000009482	ENSLOCG00000009487	ENSLOCG00000009492	timd4 (ENSLOCG00000009509)	egr1 (ENSLOCG00000009516)
Osteoglossocephalai	ANCESTRAL SPECIES	77	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.a.b	ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.g.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00390000005589.a.b	ENSGT00550000074939	ENSGT00940000164576.b.a.b	ENSGT00940000156835	ENSGT00950000183067.a.b.a.d	ENSGT00730000112008	ENSGT00390000010712	ENSGT00940000164705	ENSGT00530000063371.C.a	ENSGT00940000157061.b	ENSGT00940000165836	ENSGT00940000158095	ENSGT00940000160001	ENSGT00940000165075.a.b
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	23	ENSGT00390000014165	ENSGT00940000160854	ENSGT01030000234518.A.a.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000159624.b	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.a	ENSGT00940000157281.x	ENSGT00390000012630.A.b	ENSGT00940000156641	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.k ##22	ENSGT00950000183067.a.b.a.d	ENSGT00390000005589.a.b.n	ENSGT00550000074939	ENSGT00940000164576.b.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b.a	ENSGT00390000007135	ENSGT01030000234566.e.b.a.b.c.a	ENSGT00940000165340
Asian bonytongue	MODERN SPECIES	4	ENSSFOG00015017779	rpl26 (ENSSFOG00015026723)	IL17B (ENSSFOG00015017749)	PPP2R2B (ENSSFOG00015031806)	GPR151 (ENSSFOG00015017703)	tcerg1a (ENSSFOG00015017666)	ADAM19 (ENSSFOG00015017640)	thg1l (ENSSFOG00015017619)	LSM11 (ENSSFOG00015025495)	clint1a (ENSSFOG00015017553)	EBF1 (ENSSFOG00015017450)	RNF145 (ENSSFOG00015017406)	ENSSFOG00015017328	adrb2a (ENSSFOG00015017309)	SH3TC2 (ENSSFOG00015017275)	ablim3 (ENSSFOG00015017193) ##22	afap1l1a (ENSSFOG00015017127)	grpel2 (ENSSFOG00015017109)	pttg1 (ENSSFOG00015017097)	ENSSFOG00015017077	nhp2 (ENSSFOG00015032223)	foxi3b (ENSSFOG00015017028)	ENSSFOG00015027779	ENSSFOG00015016865	WNT8A (ENSSFOG00015016952)	ENSSFOG00015027769	gria1a (ENSSFOG00015016777)	ENSSFOG00015016829	ENSSFOG00015027125	ENSSFOG00015016730	itk (ENSSFOG00015016656)
P. kingsleyae	MODERN SPECIES	186														adrb2a (ENSPKIG00000006595)	SH3TC2 (ENSPKIG00000006541)	ablim3 (ENSPKIG00000006492) ##22	afap1l1a (ENSPKIG00000006453)	ENSPKIG00000006435	grpel2 (ENSPKIG00000006425)	nhp2 (ENSPKIG00000006410)	ENSPKIG00000006394	foxi3b (ENSPKIG00000006380)	ENSPKIG00000006356	ENSPKIG00000006339	gria1a (ENSPKIG00000006257)	ENSPKIG00000006150	ENSPKIG00000006078	itk (ENSPKIG00000006022)	cyfip2 (ENSPKIG00000005965)	hmmr (ENSPKIG00000005898)	ENSPKIG00000005870
Osteoglossiformes	ANCESTRAL SPECIES	23	ENSGT00390000000483.a.a.e	ENSGT00940000154998.a.a.s	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b	ENSGT00390000005989.a.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b.g	ENSGT00390000011206.b	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.b	ENSGT00940000157281.w	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b.l ##22	ENSGT00950000183067.a.b.a.c	ENSGT00390000005589.a.b.m	ENSGT00940000164576.b.a.b	ENSGT00940000161176	ENSGT00940000156835	ENSGT00390000010712	ENSGT00940000164705	ENSGT00530000063371.C.a.a	ENSGT00940000157061.b	ENSGT00940000165836	ENSGT00940000158095	ENSGT00940000160001	ENSGT00940000165075.a.b	ENSGT00940000163509.b	ENSGT00940000163509.a.a.a
Asian bonytongue	MODERN SPECIES	19	bod1 (ENSSFOG00015000254)	stc2a (ENSSFOG00015000247)	CREBRF (ENSSFOG00015000199)	atp6v0e1 (ENSSFOG00015026286)	PCYOX1L (ENSSFOG00015024935)	ENSSFOG00015000086	TCERG1 (ENSSFOG00015023283)	CLINT1 (ENSSFOG00015023249)	ENSSFOG00015023239	EBF1 (ENSSFOG00015023208)	RNF145 (ENSSFOG00015023193)	ublcp1 (ENSSFOG00015023175)	ENSSFOG00015024617	ubtd2 (ENSSFOG00015030397)	adrb2b (ENSSFOG00015030060)	ablim3 (ENSSFOG00015023081) ##22	afap1l1b (ENSSFOG00015023026)	grpel2 (ENSSFOG00015030367)	foxi3a (ENSSFOG00015028060)	lcp2a (ENSSFOG00015022992)	zmat2 (ENSSFOG00015022982)	ENSSFOG00015022968	fam53c (ENSSFOG00015033270)	ENSSFOG00015022938	ENSSFOG00015022932	timd4 (ENSSFOG00015022926)	ENSSFOG00015022917	ENSSFOG00015029758	PWWP2A (ENSSFOG00015022869)	ENSSFOG00015022891	slc23a1 (ENSSFOG00015022821)
P. kingsleyae	MODERN SPECIES	102									EBF1 (ENSPKIG00000017357)	RNF145 (ENSPKIG00000017449)	ublcp1 (ENSPKIG00000017480)	ENSPKIG00000017501	ubtd2 (ENSPKIG00000017530)	ENSPKIG00000017541	adrb2b (ENSPKIG00000017550)	ablim3 (ENSPKIG00000017594) ##22	afap1l1b (ENSPKIG00000017659)	grpel2 (ENSPKIG00000017691)	ENSPKIG00000017711	lcp2a (ENSPKIG00000017751)	zmat2 (ENSPKIG00000017778)	fam53c (ENSPKIG00000017801)	ENSPKIG00000017830	ENSPKIG00000017864	timd4 (ENSPKIG00000017892)	ENSPKIG00000017927	ENSPKIG00000017935	ENSPKIG00000017948	ENSPKIG00000017958	ENSPKIG00000017975	ENSPKIG00000017984
Clupeocephala	ANCESTRAL SPECIES	11													ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00390000005589.a.b	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	181												ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b.m ##22	ENSGT00950000183067.a.b.a.c	ENSGT00390000005589.a.b	ENSGT00550000074939	ENSGT00940000164576.b.a.b	ENSGT00940000156835.k	ENSGT00390000010712	ENSGT00940000164705	ENSGT00940000159345	ENSGT00940000156944.a.a	ENSGT00950000182934.b	ENSGT00940000157213	ENSGT00940000157692	ENSGT00940000157139.b	ENSGT00940000159349	ENSGT00950000182953.C.d
Clupeiformes	ANCESTRAL SPECIES	115											ENSGT00940000164917	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b.m ##22	ENSGT00950000183067.a.b.a.c	ENSGT00390000005589.a.b	ENSGT00550000074939	ENSGT00940000164576.b.a.b	ENSGT00940000156835.k	ENSGT00390000010712	ENSGT00940000164705	ENSGT00530000063371.C.a	ENSGT00940000163509.b	ENSGT00940000163509.a.a.a	ENSGT00940000163509.a.a.b	ENSGT00940000156944.a.a	ENSGT00950000182934.b	ENSGT00940000157213	ENSGT00940000157692
Denticle herring	MODERN SPECIES	16	ENSDCDG00000022119	PAK3 (ENSDCDG00000022088)	ENSDCDG00000022078	ENSDCDG00000022074	gria1b (ENSDCDG00000021440)	nipal4 (ENSDCDG00000021407)	TENM2 (ENSDCDG00000014499)	zgc:165573 (ENSDCDG00000014000)	mat2b (ENSDCDG00000013937)	ankhd1 (ENSDCDG00000033117)	zgc:110540 (ENSDCDG00000033043)	ublcp1 (ENSDCDG00000033040)	ENSDCDG00000033037	ubtd2 (ENSDCDG00000033035)	adrb2b (ENSDCDG00000033033)	ablim3 (ENSDCDG00000032880) ##22	afap1l1b (ENSDCDG00000032866)	grpel2 (ENSDCDG00000032864)	nhp2 (ENSDCDG00000032863)	foxi3a (ENSDCDG00000032861)	lcp2a (ENSDCDG00000032859)	zmat2 (ENSDCDG00000032855)	slbp2 (ENSDCDG00000032851)	fam53c (ENSDCDG00000032849)	ENSDCDG00000032678	ENSDCDG00000032671	timd4 (ENSDCDG00000032670)	ENSDCDG00000032669	ENSDCDG00000032668	ADRA1B (ENSDCDG00000032667)	ENSDCDG00000032665
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000015870	ENSCHAG00000015877	hnrnpabb (ENSCHAG00000000894)	gria1b (ENSCHAG00000001190)	nipal4 (ENSCHAG00000001747)	TENM2 (ENSCHAG00000001976)	zgc:165573 (ENSCHAG00000007303)	mat2b (ENSCHAG00000007316)	eif4ebp3 (ENSCHAG00000007456)	ankhd1 (ENSCHAG00000007635)	zgc:110540 (ENSCHAG00000009506)	ublcp1 (ENSCHAG00000009533)	ENSCHAG00000009567	ubtd2 (ENSCHAG00000010707)	adrb2b (ENSCHAG00000010726)	ablim3 (ENSCHAG00000010763) ##22	afap1l1b (ENSCHAG00000012303)	grpel2 (ENSCHAG00000012344)	foxi3a (ENSCHAG00000012354)	fam53c (ENSCHAG00000012371)	ENSCHAG00000012401	timd4 (ENSCHAG00000012771)	havcr1 (ENSCHAG00000012784)	ADRA1B (ENSCHAG00000012797)	ttc1 (ENSCHAG00000012861)	PWWP2A (ENSCHAG00000012878)	fabp6 (ENSCHAG00000012886)	slc23a1 (ENSCHAG00000012939)	pfdn1 (ENSCHAG00000015113)	ENSCHAG00000015132	hnrnph1l (ENSCHAG00000015173)
Otophysi	ANCESTRAL SPECIES	123	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00390000000080.a.b	ENSGT00620000088064	ENSGT00390000002110	ENSGT00940000158509	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00530000063407.b	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641.k.a	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b.m ##22
Characiphysae	ANCESTRAL SPECIES	60	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00390000000080.a.b	ENSGT00620000088064	ENSGT00390000002110	ENSGT00940000158509	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00530000063407.b	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641.k.a	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b.m ##22	ENSGT00940000156339	ENSGT00950000183018.a.d.b	ENSGT00530000063582.a	ENSGT00510000047092	ENSGT00940000158744	ENSGT01060000248589.C.h	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000000360	ENSGT00390000012647	ENSGT00940000154783	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Channel catfish	MODERN SPECIES	9	slco2b1 (ENSIPUG00000009338)	SERPINF1 (ENSIPUG00000009470)	Serpinf2 (ENSIPUG00000009487)	SLC13A5 (ENSIPUG00000009531)	med31 (ENSIPUG00000009602)	slc47a1 (ENSIPUG00000009645)	slc47a1 (ENSIPUG00000009665)	tmigd1 (ENSIPUG00000009744)	ENSIPUG00000009776	plrdgb (ENSIPUG00000009808)	ENSIPUG00000009948	ublcp1 (ENSIPUG00000009968)	il12b (ENSIPUG00000010114)	ubtd2 (ENSIPUG00000010146)	adrb2b (ENSIPUG00000010148)	ABLIM3 (ENSIPUG00000010168) ##22	cct6a (ENSIPUG00000010208)	NIPSNAP2 (ENSIPUG00000010266)	tmlhe (ENSIPUG00000010290)	dkc1 (ENSIPUG00000010309)	mpp1 (ENSIPUG00000010364)	ENSIPUG00000010427	ENSIPUG00000010448	ENSIPUG00000010479	GABRA3 (ENSIPUG00000010510)	ENSIPUG00000010521	brcc3 (ENSIPUG00000010538)	FUNDC1 (ENSIPUG00000010565)	cmc4 (ENSIPUG00000010593)	TMEM164 (ENSIPUG00000010615)	ammecr1 (ENSIPUG00000010641)
Characiphysae_b	ANCESTRAL SPECIES	6	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00390000000080.a.b	ENSGT00620000088064	ENSGT00390000002110	ENSGT00940000158509	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00530000063407.b	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641.k.a	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b.m ##22	ENSGT00940000156339	ENSGT00950000183018.a.d.b	ENSGT00530000063582.a	ENSGT00510000047092	ENSGT00940000158744	ENSGT01060000248589.C.h	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000000360	ENSGT00390000012647	ENSGT00940000154783	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Characoidei	ANCESTRAL SPECIES	17	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00390000000080.a.b	ENSGT00620000088064	ENSGT00390000002110	ENSGT00940000158509	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00530000063407.b	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641.k.a	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b.m ##22	ENSGT00940000156339	ENSGT00950000183018.a.d.b	ENSGT00530000063582.a	ENSGT00510000047092	ENSGT00940000158744	ENSGT01060000248589.C.h	ENSGT00940000160507	ENSGT00940000164188	ENSGT00940000159444	ENSGT00390000000360	ENSGT00390000012647	ENSGT00940000154783	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000158195
Mexicana tetra	MODERN SPECIES	5	nop16 (ENSAMXG00000006843)	ENSAMXG00000036791	WWC1 (ENSAMXG00000006817)	cnot8 (ENSAMXG00000041098)	GEMIN5 (ENSAMXG00000006771)	mrpl22 (ENSAMXG00000006753)	ENSAMXG00000036186	ENSAMXG00000042573	sgcd (ENSAMXG00000006747)	ENSAMXG00000017310	rars1 (ENSAMXG00000017290)	ublcp1 (ENSAMXG00000017277)	ENSAMXG00000017264	ubtd2 (ENSAMXG00000017243)	adrb2b (ENSAMXG00000025830)	ABLIM3 (ENSAMXG00000017208) ##22	cct6a (ENSAMXG00000017185)	ENSAMXG00000041512	TMLHE (ENSAMXG00000029827)	dkc1 (ENSAMXG00000017108)	MPP1 (ENSAMXG00000034396)	ENSAMXG00000025829	ENSAMXG00000017046	ENSAMXG00000032194	ENSAMXG00000017014	GABRA3 (ENSAMXG00000020340)	BRCC3 (ENSAMXG00000036716)	cmc4 (ENSAMXG00000042179)	fundc2 (ENSAMXG00000043151)	TMEM164 (ENSAMXG00000035817)	ENSAMXG00000034707
Red-bellied piranha	MODERN SPECIES	107	ENSPNAG00000017874	ENSPNAG00000017895	patl1 (ENSPNAG00000017907)	dnaja1 (ENSPNAG00000017951)	ENSPNAG00000017960	rps6 (ENSPNAG00000017985)	ENSPNAG00000018016	ENSPNAG00000018026	sgcd (ENSPNAG00000018054)	ENSPNAG00000018112	rars1 (ENSPNAG00000018183)	ublcp1 (ENSPNAG00000018236)	ENSPNAG00000003516	ubtd2 (ENSPNAG00000018276)	adrb2b (ENSPNAG00000018285)	ABLIM3 (ENSPNAG00000018341) ##22	cct6a (ENSPNAG00000018405)	NIPSNAP2 (ENSPNAG00000018459)	cxcl11.1 (ENSPNAG00000006645)	ENSPNAG00000018507	ENSPNAG00000006131	ENSPNAG00000018545	cnot6l (ENSPNAG00000003537)	mrpl1 (ENSPNAG00000018662)	fras1 (ENSPNAG00000019185)	bmp2k (ENSPNAG00000019284)	paqr3a (ENSPNAG00000019318)	antxr2a (ENSPNAG00000019395)	prdm8b (ENSPNAG00000019414)	fgf5 (ENSPNAG00000019426)	cfap299 (ENSPNAG00000019451)
Electric eel	MODERN SPECIES	40	GRK6 (ENSEEEG00000019333)	nop16 (ENSEEEG00000019310)	ARL10 (ENSEEEG00000019309)	WWC1 (ENSEEEG00000019308)	cnot8 (ENSEEEG00000019307)	GEMIN5 (ENSEEEG00000019305)	mrpl22 (ENSEEEG00000019302)	ENSEEEG00000019300	sgcd (ENSEEEG00000019299)	ENSEEEG00000019295	rars1 (ENSEEEG00000019288)	ublcp1 (ENSEEEG00000019281)	ENSEEEG00000019278	ubtd2 (ENSEEEG00000019276)	adrb2b (ENSEEEG00000019275)	ABLIM3 (ENSEEEG00000019270) ##22	cct6a (ENSEEEG00000019256)	NIPSNAP2 (ENSEEEG00000019233)	TMLHE (ENSEEEG00000019227)	ARX (ENSEEEG00000019222)	ENSEEEG00000019221	ccdc82 (ENSEEEG00000019220)	pomp (ENSEEEG00000019207)	ENSEEEG00000019202	ENSEEEG00000019199	cd74b (ENSEEEG00000019197)	rps14 (ENSEEEG00000019195)	ndst1b (ENSEEEG00000019115)	rbm22 (ENSEEEG00000019104)	ENSEEEG00000019101	ENSEEEG00000019100
Otomorpha	ANCESTRAL SPECIES	221							ENSGT00940000159624	ENSGT00390000011705	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.b	ENSGT00940000157281	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.n ##22	ENSGT00950000183067.a.b.a.d	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT01060000248750	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850	ENSGT00500000044831.a.a.b
Otophysi	ANCESTRAL SPECIES	22											ENSGT00390000012630.A.b	ENSGT00390000007501	ENSGT00940000156641.k.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.n ##22	ENSGT00950000183067.a.b.a.d	ENSGT00390000009693	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000179769	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850
Characiphysae	ANCESTRAL SPECIES	7	ENSGT00940000153737.a	ENSGT00940000159092	ENSGT00940000159149	ENSGT00940000159060	ENSGT00940000153304.A	ENSGT00940000166023	ENSGT00940000161486	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.b	ENSGT00390000012630.A.b	ENSGT00390000007501	ENSGT00940000156641.k.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.n ##22	ENSGT00950000183067.a.b.a.d	ENSGT00390000009693	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000179769	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b
Characiphysae_b	ANCESTRAL SPECIES	7											ENSGT00390000012630.A.b	ENSGT00390000007501	ENSGT00940000156641.k.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.n ##22	ENSGT00950000183067.a.b.a.d	ENSGT00390000009693	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000179769	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b
Characoidei	ANCESTRAL SPECIES	2	ENSGT00940000159092	ENSGT00940000159149	ENSGT00940000159060	ENSGT00940000153304.A	ENSGT00940000166023	ENSGT00940000161486	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.b	ENSGT00940000157281	ENSGT00940000166658.a	ENSGT00390000012630.A.b	ENSGT00940000156641.k.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.n ##22	ENSGT00950000183067.a.b.a.d	ENSGT00390000009693	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000179769	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000158850	ENSGT00500000044831.a.a.b
Red-bellied piranha	MODERN SPECIES	56	ENSPNAG00000018925	tspan7 (ENSPNAG00000018991)	SRPX2 (ENSPNAG00000019001)	sytl4 (ENSPNAG00000005144)	trmt12 (ENSPNAG00000019028)	rnaseh2c (ENSPNAG00000019111)	ZBTB3 (ENSPNAG00000019119)	LSM11 (ENSPNAG00000019128)	clint1a (ENSPNAG00000019182)	ebf3a (ENSPNAG00000019350)	RNF145 (ENSPNAG00000019400)	il12ba (ENSPNAG00000005879)	UBTD2 (ENSPNAG00000019833)	adrb2a (ENSPNAG00000019838)	SH3TC2 (ENSPNAG00000006468)	ablim3 (ENSPNAG00000019976) ##22	afap1l1a (ENSPNAG00000020021)	pttg1 (ENSPNAG00000020030)	ENSPNAG00000020045	foxi3b (ENSPNAG00000020052)	zgc:194246 (ENSPNAG00000020055)	ENSPNAG00000020065	ENSPNAG00000020109	WNT8A (ENSPNAG00000020116)	ENSPNAG00000020146	ENSPNAG00000020157	gria1a (ENSPNAG00000020218)	ENSPNAG00000020292	itk (ENSPNAG00000020462)	cyfip2 (ENSPNAG00000020606)	foxa (ENSPNAG00000020633)
Mexicana tetra	MODERN SPECIES	16	SRPX2 (ENSAMXG00000040946)	sytl4 (ENSAMXG00000001212)	trmt12 (ENSAMXG00000040366)	rnaseh2c (ENSAMXG00000001210)	ENSAMXG00000044033	LSM11 (ENSAMXG00000033820)	clint1a (ENSAMXG00000001202)	ebf3a (ENSAMXG00000001200)	RNF145 (ENSAMXG00000038735)	ENSAMXG00000040860	il12ba (ENSAMXG00000001197)	ENSAMXG00000034568	adrb2a (ENSAMXG00000026034)	ENSAMXG00000026033	SH3TC2 (ENSAMXG00000001194)	ablim3 (ENSAMXG00000007158) ##22	afap1l1a (ENSAMXG00000007308)	pttg1 (ENSAMXG00000007324)	ENSAMXG00000035984	prelid1a (ENSAMXG00000038989)	npy7r (ENSAMXG00000026043)	trim105 (ENSAMXG00000032694)	flt4 (ENSAMXG00000001322)	ergic1 (ENSAMXG00000038323)	dusp1 (ENSAMXG00000036546)	neurl1b (ENSAMXG00000005988)	spink2.5 (ENSAMXG00000032095)	uvssa (ENSAMXG00000005976)	nkx1.2lb (ENSAMXG00000031090)	ENSAMXG00000036953	slbp (ENSAMXG00000014527)
Electric eel	MODERN SPECIES	550											ENSEEEG00000002591	ENSEEEG00000002597	UBTD2 (ENSEEEG00000002601)	adrb2a (ENSEEEG00000002610)	SH3TC2 (ENSEEEG00000002619)	ablim3 (ENSEEEG00000002692) ##22	afap1l1a (ENSEEEG00000002697)	pttg1 (ENSEEEG00000002706)	ENSEEEG00000002708	foxi3b (ENSEEEG00000002710)	zgc:194246 (ENSEEEG00000002712)	ENSEEEG00000002721	WNT8A (ENSEEEG00000002796)	ENSEEEG00000002797	ENSEEEG00000002798	SEMA6B (ENSEEEG00000002799)
Channel catfish	MODERN SPECIES	27	Xk (ENSIPUG00000017780)	nox1 (ENSIPUG00000017799)	cstf2 (ENSIPUG00000017839)	ENSIPUG00000017870	tspan7 (ENSIPUG00000017920)	srpx2 (ENSIPUG00000017961)	SYTL4 (ENSIPUG00000017973)	trmt12 (ENSIPUG00000018011)	rnaseh2c (ENSIPUG00000018044)	ZBTB3 (ENSIPUG00000018082)	lsm11 (ENSIPUG00000018086)	CLINT1 (ENSIPUG00000018092)	ebf1 (ENSIPUG00000018125)	ENSIPUG00000018187	SH3TC2 (ENSIPUG00000018204)	ablim3 (ENSIPUG00000018280) ##22	afap1l1 (ENSIPUG00000018335)	ENSIPUG00000018444	foxi1e (ENSIPUG00000018458)	zgc:194246 (ENSIPUG00000018466)	ENSIPUG00000018474	WNT8A (ENSIPUG00000018480)	ENSIPUG00000018489	GRIA1 (ENSIPUG00000018516)	LONRF1 (ENSIPUG00000018548)	med7 (ENSIPUG00000018597)	itk (ENSIPUG00000018605)	CYFIP2 (ENSIPUG00000018665)	foxa2-a (ENSIPUG00000018793)	zdhhc24 (ENSIPUG00000018806)	ENSIPUG00000018816
Cyprinoidei	ANCESTRAL SPECIES	9	ENSGT00940000156344.b	ENSGT00940000158645	ENSGT00390000006394	ENSGT00940000160322	ENSGT00940000159149	ENSGT00940000159060	ENSGT00940000153304.A	ENSGT00940000166023	ENSGT00940000161486	ENSGT00390000012944	ENSGT00940000155650.a.a	ENSGT00950000182859.A.a.b.b.d.b	ENSGT00390000012630.A.b	ENSGT00940000159538.g.a	ENSGT00530000063812.B	ENSGT00950000182850.a.b.a.b.b.n ##22	ENSGT00950000183067.a.b.a.d	ENSGT00390000009693	ENSGT00940000166663	ENSGT00940000164576.b.a.a	ENSGT01030000235237	ENSGT00940000179769	ENSGT00940000156835.l.a.a	ENSGT00940000157840.b	ENSGT00940000157840.a	ENSGT00940000167593	ENSGT00940000157342.c.a	ENSGT00440000033329.a.a.a	ENSGT00940000165241	ENSGT00940000154444.B	ENSGT00940000158850
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	43	ENSGT00390000006394.b	ENSGT00940000160322.b	ENSGT00940000159149.d	ENSGT00940000159060.b	ENSGT00940000153304.A.c	ENSGT00940000166023.a	ENSGT00940000161486.g	ENSGT00390000012944	ENSGT00940000155650.a.a.g	ENSGT00950000182859.A.a.b.b.d.b.a	ENSGT00940000157281.r.b.a	ENSGT00390000012630.A.b.b	ENSGT00390000007501	ENSGT00940000159538.g.a.a	ENSGT00530000063812.B.h	ENSGT00950000182850.a.b.a.b.b.n.a ##22	ENSGT00950000183067.a.b.a.d.b	ENSGT00390000009693.fb	ENSGT00940000166663.b	ENSGT00940000164576.b.a.a.h	ENSGT01030000235237.b	ENSGT00940000156835.l.a.a.b	ENSGT00940000157840.b.b	ENSGT00940000157840.a.b	ENSGT00940000167593.e.a	ENSGT00940000157342.c.a.a	ENSGT00440000033329.a.a.a.e	ENSGT00940000165241.b	ENSGT00940000154444.B	ENSGT00940000158850.n	ENSGT00500000044831.a.a.b.f.b
Goldfish	MODERN SPECIES	5	mrpl18 (ENSCARG00000054745)	SSH3 (ENSCARG00000054753)	sytl4 (ENSCARG00000054828)	SRPX2 (ENSCARG00000054859)	trmt12 (ENSCARG00000054889)	rnaseh2c (ENSCARG00000054918)	ZBTB3 (ENSCARG00000054952)	LSM11 (ENSCARG00000054958)	clint1a (ENSCARG00000054975)	ebf3a (ENSCARG00000055166)	RNF145 (ENSCARG00000057629)	il12ba (ENSCARG00000057679)	EFCAB9 (ENSCARG00000057711)	adrb2a (ENSCARG00000057714)	SH3TC2 (ENSCARG00000057731)	ablim3 (ENSCARG00000057890) ##22	afap1l1a (ENSCARG00000058547)	pttg1 (ENSCARG00000058576)	ENSCARG00000058596	foxi3b (ENSCARG00000058659)	zgc:194246 (ENSCARG00000058675)	ENSCARG00000058688	ENSCARG00000058705	WNT8A (ENSCARG00000058750)	ENSCARG00000058782	gria1a (ENSCARG00000058821)	ENSCARG00000058908	ENSCARG00000058924	itk (ENSCARG00000058951)	cyfip2 (ENSCARG00000059433)	foxa (ENSCARG00000059870)
Cyprininae_a	ANCESTRAL SPECIES	97	ENSGT00940000156344.b.e	ENSGT00940000158645.h	ENSGT00940000160322.b	ENSGT00940000159149.d	ENSGT00940000159060.b	ENSGT00940000153304.A.c	ENSGT00940000161486.g	ENSGT00390000012944	ENSGT00940000155650.a.a.g	ENSGT00950000182859.A.a.b.b.d.b.a	ENSGT00940000157281.r.b.a	ENSGT00390000012630.A.b.b	ENSGT00390000007501	ENSGT00940000159538.g.a.a	ENSGT00530000063812.B.h	ENSGT00950000182850.a.b.a.b.b.n.a ##22	ENSGT00950000183067.a.b.a.d.b	ENSGT00940000164576.b.a.a.h	ENSGT01030000235237.b	ENSGT00940000156835.l.a.a.b	ENSGT00940000157840.b.b	ENSGT00940000157840.a.b	ENSGT00940000167593.e.a	ENSGT00940000157342.c.a.a	ENSGT00440000033329.a.a.a.e	ENSGT00940000154444.B	ENSGT00940000158850.n	ENSGT00500000044831.a.a.b.f.b	ENSGT00940000155999.f.b	ENSGT00940000164006.n.a	ENSGT01030000234532.A.a.a.a.a.b.l
Common carp reference	MODERN SPECIES	35	glrbb (ENSCCRG00000016043)	PDGFC (ENSCCRG00000018720)	ENSCCRG00000012911	ENSCCRG00000081130	sytl4 (ENSCCRG00000050668)	trmt12 (ENSCCRG00000060895)	ENSCCRG00000071752	LSM11 (ENSCCRG00000073242)	clint1a (ENSCCRG00000053927)	ebf3a (ENSCCRG00000060568)	RNF145 (ENSCCRG00000032860)	il12ba (ENSCCRG00000032928)	ENSCCRG00000035854	adrb2a (ENSCCRG00000035856)	SH3TC2 (ENSCCRG00000035858)	ablim3 (ENSCCRG00000058203) ##22	ENSCCRG00000028249	afap1l1a (ENSCCRG00000035746)	foxi3b (ENSCCRG00000073939)	zgc:194246 (ENSCCRG00000035761)	ENSCCRG00000054166	ENSCCRG00000054631	ENSCCRG00000073085	ENSCCRG00000082902	gria1a (ENSCCRG00000035631)	ENSCCRG00000008606	med7 (ENSCCRG00000078971)	itk (ENSCCRG00000008658)	ENSCCRG00000010963	cyfip2 (ENSCCRG00000011167)	foxa (ENSCCRG00000078916)
Golden-line barbel	MODERN SPECIES	329	mrpl18 (ENSSGRG00000021873)	ENSSGRG00000021872	SRPX2 (ENSSGRG00000021790)	sytl4 (ENSSGRG00000021785)	trmt12 (ENSSGRG00000021782)	ZBTB3 (ENSSGRG00000021781)	rnaseh2c (ENSSGRG00000021778)	LSM11 (ENSSGRG00000021775)	clint1a (ENSSGRG00000021767)	ebf3a (ENSSGRG00000021317)	il12ba (ENSSGRG00000021303)	ENSSGRG00000021302	EFCAB9 (ENSSGRG00000021300)	adrb2a (ENSSGRG00000021299)	SH3TC2 (ENSSGRG00000021298)	ablim3 (ENSSGRG00000021270) ##22	afap1l1a (ENSSGRG00000021269)	pttg1 (ENSSGRG00000021268)	foxi3b (ENSSGRG00000021266)	zgc:194246 (ENSSGRG00000021265)	ENSSGRG00000021264	ENSSGRG00000021263	ENSSGRG00000021262	gria1a (ENSSGRG00000021261)
Cyprininae	ANCESTRAL SPECIES	394	ENSGT00940000156344.b.f	ENSGT00940000158645.g.a	ENSGT00390000006394.a	ENSGT00940000160322.a	ENSGT00940000159149.c	ENSGT00940000159060.a	ENSGT00940000153304.A.d	ENSGT00940000166023.b	ENSGT00940000161486.h	ENSGT00940000155650.a.a.h	ENSGT00950000182859.A.a.b.b.d.b.b	ENSGT00940000157281.r.b.b	ENSGT00390000012630.A.b.a	ENSGT00940000159538.g.a.b	ENSGT00530000063812.B.g	ENSGT00950000182850.a.b.a.b.b.n.b ##22	ENSGT00950000183067.a.b.a.d.a	ENSGT00390000009693.gb	ENSGT00940000166663.a	ENSGT00940000164576.b.a.a.g	ENSGT01030000235237.a	ENSGT00940000156835.l.a.a.a	ENSGT00940000157840.b.a	ENSGT00940000157840.a.a	ENSGT00940000167593.e.b	ENSGT00940000157342.c.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	50	ENSGT00940000156344.b.f	ENSGT00940000158645.g.a	ENSGT00390000006394.a	ENSGT00940000160322.a	ENSGT00940000159149.c	ENSGT00940000159060.a	ENSGT00940000153304.A.d	ENSGT00940000166023.b	ENSGT00940000161486.h	ENSGT00940000155650.a.a.h	ENSGT00950000182859.A.a.b.b.d.b.b	ENSGT00940000157281.r.b.b	ENSGT00390000012630.A.b.a	ENSGT00940000159538.g.a.b	ENSGT00530000063812.B.g	ENSGT00950000182850.a.b.a.b.b.n.b ##22	ENSGT00950000183067.a.b.a.d.a	ENSGT00390000009693.gb	ENSGT00940000166663.a	ENSGT00940000164576.b.a.a.g	ENSGT01030000235237.a	ENSGT00940000156835.l.a.a.a	ENSGT00940000157840.b.a	ENSGT00940000157840.a.a	ENSGT00940000167593.e.b	ENSGT00940000167593.f	ENSGT00940000157342.c.a.b.a	ENSGT00440000033329.a.a.a.f	ENSGT00940000165241.a	ENSGT00940000158850.m	ENSGT00500000044831.a.a.b.f.a
Golden-line barbel	MODERN SPECIES	1270															SH3TC2 (ENSSGRG00000038121)	ablim3 (ENSSGRG00000038131) ##22	pttg1 (ENSSGRG00000038431)	ENSSGRG00000038432	foxi3b (ENSSGRG00000038433)	zgc:194246 (ENSSGRG00000038434)	WNT8A (ENSSGRG00000038437)	WNT8A (ENSSGRG00000038438)	gria1a (ENSSGRG00000038460)
Common carp reference	MODERN SPECIES	20	gria2b (ENSCCRG00000062450)	glrbb (ENSCCRG00000010375)	PDGFC (ENSCCRG00000050934)	mrpl18 (ENSCCRG00000036088)	ENSCCRG00000050953	ENSCCRG00000050968	trmt12 (ENSCCRG00000050670)	rnaseh2c (ENSCCRG00000075716)	ENSCCRG00000082456	clint1a (ENSCCRG00000051054)	ebf3a (ENSCCRG00000051070)	RNF145 (ENSCCRG00000037085)	il12ba (ENSCCRG00000061591)	adrb2a (ENSCCRG00000055158)	SH3TC2 (ENSCCRG00000053204)	ablim3 (ENSCCRG00000046571) ##22	afap1l1a (ENSCCRG00000052582)	ENSCCRG00000052576	foxi3b (ENSCCRG00000052574)	ENSCCRG00000052568	ENSCCRG00000082587	ENSCCRG00000052561	ENSCCRG00000074841	gria1a (ENSCCRG00000064017)	ENSCCRG00000014538	ENSCCRG00000008609	itk (ENSCCRG00000014571)	cyfip2 (ENSCCRG00000014694)	foxa (ENSCCRG00000059016)	zdhhc24 (ENSCCRG00000032405)	ENSCCRG00000053220
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	32	gfra3 (ENSCARG00000006698)	brd8b (ENSCARG00000006727)	ENSCARG00000006873	sting1 (ENSCARG00000006878)	ppp3cb (ENSCARG00000007001)	ENSCARG00000009478	zgc:110843 (ENSCARG00000009672)	CXXC5 (ENSCARG00000009680)	zgc:92242 (ENSCARG00000009685)	PSD2 (ENSCARG00000009716)	PURA (ENSCARG00000010958)	nrg2b (ENSCARG00000010963)	ENSCARG00000010975	adrb2a (ENSCARG00000010977)	SH3TC2 (ENSCARG00000010995)	ablim3 (ENSCARG00000011068) ##22	afap1l1a (ENSCARG00000012151)	pttg1 (ENSCARG00000012214)	ENSCARG00000012223	foxi3b (ENSCARG00000012248)	zgc:194246 (ENSCARG00000012254)	ENSCARG00000012264	ENSCARG00000012272	TSC22D3 (ENSCARG00000012278)	MID2 (ENSCARG00000012312)	nek12 (ENSCARG00000012393)	pin4 (ENSCARG00000012397)	acsl4a (ENSCARG00000012469)	ENSCARG00000013349	psmd10 (ENSCARG00000013355)	xiap (ENSCARG00000013360)
Goldfish	MODERN SPECIES	32	gria2b (ENSCARG00000022122)	glrbb (ENSCARG00000022109)	PDGFC (ENSCARG00000022101)	mrpl18 (ENSCARG00000022092)	ENSCARG00000022070	SRPX2 (ENSCARG00000022029)	sytl4 (ENSCARG00000021992)	ZBTB3 (ENSCARG00000021988)	rnaseh2c (ENSCARG00000021971)	clint1a (ENSCARG00000021906)	ebf3a (ENSCARG00000021736)	RNF145 (ENSCARG00000021649)	il12ba (ENSCARG00000021635)	adrb2a (ENSCARG00000021626)	SH3TC2 (ENSCARG00000021607)	ablim3 (ENSCARG00000020588) ##22	afap1l1a (ENSCARG00000020537)	pttg1 (ENSCARG00000020532)	ENSCARG00000020457	foxi3b (ENSCARG00000020446)	zgc:194246 (ENSCARG00000020438)	ENSCARG00000020431	ENSCARG00000020426	ENSCARG00000020419	gria1a (ENSCARG00000020365)	ENSCARG00000020330	ENSCARG00000020318	itk (ENSCARG00000020289)	cyfip2 (ENSCARG00000020116)	foxa (ENSCARG00000020108)	zdhhc24 (ENSCARG00000020091)
Zebrafish	MODERN SPECIES	5	PDGFC (ENSDARG00000077588)	mrpl18 (ENSDARG00000060199)	ENSDARG00000079591	SRPX2 (ENSDARG00000034559)	sytl4 (ENSDARG00000102433)	trmt12 (ENSDARG00000060338)	rnaseh2c (ENSDARG00000089637)	ZBTB3 (ENSDARG00000036235)	LSM11 (ENSDARG00000090854)	clint1a (ENSDARG00000025535)	ebf3a (ENSDARG00000099849)	RNF145 (ENSDARG00000002609)	il12ba (ENSDARG00000033727)	adrb2a (ENSDARG00000088124)	SH3TC2 (ENSDARG00000089917)	ablim3 (ENSDARG00000088168) ##22	afap1l1a (ENSDARG00000089162)	pttg1 (ENSDARG00000075421)	ENSDARG00000020901	foxi3b (ENSDARG00000009550)	zgc:194246 (ENSDARG00000092889)	ENSDARG00000095092	ENSDARG00000036215	wnt8-2 (ENSDARG00000078507)	wnt8a (ENSDARG00000052910)	ENSDARG00000092970	gria1a (ENSDARG00000021352)	ENSDARG00000075048	med7 (ENSDARG00000016318)	itk (ENSDARG00000017565)	cyfip2 (ENSDARG00000036375)
Euteleosteomorpha	ANCESTRAL SPECIES	25	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a	ENSGT00940000154998.a.a	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00950000182859.A.a.b.a.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00390000005589.a.b	ENSGT00550000074939	ENSGT00940000164576.b.a.b	ENSGT00940000156835.l.b	ENSGT00940000164576.b.b	ENSGT00940000161176	ENSGT00940000156835.k	ENSGT00390000010712	ENSGT00940000164705	ENSGT00530000063371.C.a	ENSGT00530000063371.C.b	ENSGT00940000157061.b	ENSGT00940000165075.a.b	ENSGT00940000163509.b
Protacanthopterygii	ANCESTRAL SPECIES	44	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00950000182864.a.b.b.a.b.a.b.a	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b.c	ENSGT00950000182859.A.a.b.b.c.a	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.g.b	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00390000005589.a.b	ENSGT00550000074939	ENSGT00940000164576.b.a.b	ENSGT00940000156835.l.b	ENSGT00390000010712	ENSGT00940000164705	ENSGT00530000063371.C.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	39	ENSGT00940000154998.a.a.w	ENSGT00940000156198.c.b.d	ENSGT00390000005989.a.b.a.b.a	ENSGT00390000014412.k.a	ENSGT00390000007125.b.a	ENSGT00940000156866.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.b	ENSGT00940000157770.a.b	ENSGT00940000155650.a.b.c.b	ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a	ENSGT00940000157281.v	ENSGT00390000010107.v	ENSGT00390000012630.A.a.b	ENSGT00940000156641.m.b	ENSGT00940000159538.g.b.b	ENSGT00950000182850.a.b.a.b.b.o ##22	ENSGT00950000183067.a.b.a.c.e.b	ENSGT00390000005589.a.b.q	ENSGT00550000074939.a	ENSGT00940000164576.b.a.b.c	ENSGT00940000156835.l.b.b	ENSGT00390000010712	ENSGT00940000164705.f	ENSGT00530000063371.C.a.c	ENSGT00940000157061.b.k.b.a	ENSGT00940000168356	ENSGT00940000165075.a.b.a.a	ENSGT00940000163509.b.g	ENSGT00940000163509.a.a.a.q.a	ENSGT00940000156944.a.a.g	ENSGT00940000157213.n
Salmoninae_a	ANCESTRAL SPECIES	44	ENSGT00940000154998.a.a.w	ENSGT00940000156198.c.b.d	ENSGT00390000005989.a.b.a.b.a	ENSGT00390000014412.k.a	ENSGT00390000007125.b.a	ENSGT00940000156866.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.b	ENSGT00940000157770.a.b	ENSGT00940000155650.a.b.c.b	ENSGT00950000182859.A.a.b.b.c.a.b	ENSGT00940000157281.v	ENSGT00390000010107.v	ENSGT00390000012630.A.a.b	ENSGT00940000156641.m.b	ENSGT00940000159538.g.b.b	ENSGT00950000182850.a.b.a.b.b.o ##22	ENSGT00950000183067.a.b.a.c.e.b	ENSGT00390000005589.a.b.q	ENSGT00550000074939.a	ENSGT00940000164576.b.a.b.c	ENSGT00940000156835.l.b.b	ENSGT00390000010712	ENSGT00940000164705.f	ENSGT00530000063371.C.a.c	ENSGT00940000157061.b.k.b.a	ENSGT00940000168356	ENSGT00940000165075.a.b.a.a	ENSGT00940000163509.b.g	ENSGT00940000163509.a.a.a.q.a	ENSGT00940000156944.a.a.g	ENSGT00940000157213.n
Oncorhynchus	ANCESTRAL SPECIES	41	ENSGT00390000014412.k.a	ENSGT00390000007125.b.a	ENSGT00940000156866.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.b	ENSGT00940000157770.a.b	ENSGT00940000161042.c	ENSGT00940000155650.a.b.c.b	ENSGT00950000182859.A.a.a.a.e	ENSGT00950000182859.A.a.b.b.c.b	ENSGT00950000182859.A.a.b.b.c.a.b	ENSGT00940000157281.v	ENSGT00390000010107.v	ENSGT00390000012630.A.a.b	ENSGT00940000156641.m.b	ENSGT00940000159538.g.b.b	ENSGT00950000182850.a.b.a.b.b.o ##22	ENSGT00950000183067.a.b.a.c.e.b	ENSGT00390000005589.a.b.q	ENSGT00550000074939.a	ENSGT00940000164576.b.a.b.c	ENSGT00940000156835.l.b.b	ENSGT00390000010712	ENSGT00940000164705.f	ENSGT00530000063371.C.a.c	ENSGT00940000157061.b.k.b.a	ENSGT00940000168356	ENSGT00990000211609.b.b	ENSGT00940000165075.a.b.a.a	ENSGT00940000163509.b.g	ENSGT00940000163509.a.a.a.q.a	ENSGT00940000156944.a.a.g
Oncorhynchus_a	ANCESTRAL SPECIES	43	ENSGT00390000014412.k.a	ENSGT00390000007125.b.a	ENSGT00940000156866.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.b	ENSGT00940000157770.a.b	ENSGT00940000161042.c	ENSGT00940000155650.a.b.c.b	ENSGT00950000182859.A.a.a.a.e	ENSGT00950000182859.A.a.b.b.c.b	ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a	ENSGT00940000157281.v	ENSGT00390000010107.v	ENSGT00390000012630.A.a.b	ENSGT00940000156641.m.b	ENSGT00940000159538.g.b.b	ENSGT00950000182850.a.b.a.b.b.o ##22	ENSGT00950000182850.a.b.a.b.a.b.g.b.b ##22	ENSGT00950000183067.a.b.a.c.e.b	ENSGT00390000005589.a.b.q	ENSGT00550000074939.a	ENSGT00940000164576.b.a.b.c	ENSGT00940000156835.l.b.b	ENSGT00390000010712	ENSGT00940000164705.f	ENSGT00530000063371.C.a.c	ENSGT00940000157061.b.k.b.a	ENSGT00940000168356	ENSGT00990000211609.b.b	ENSGT00940000165075.a.b.a.a	ENSGT00940000163509.b.g	ENSGT00940000163509.a.a.a.q.a
Coho salmon	MODERN SPECIES	20	ATP6V0E1 (ENSOKIG00005036389)	ENSOKIG00005036438	DLX6 (ENSOKIG00005036642)	TCERG1 (ENSOKIG00005036688)	CLINT1 (ENSOKIG00005037005)	ENSOKIG00005037071	EBF1 (ENSOKIG00005037083)	EBF1 (ENSOKIG00005037089)	ENSOKIG00005037103	RNF145 (ENSOKIG00005037114)	UBLCP1 (ENSOKIG00005037194)	ENSOKIG00005037227	ENSOKIG00005037259	ubtd2 (ENSOKIG00005037269)	adrb2b (ENSOKIG00005037279)	ABLIM3 (ENSOKIG00005037308) ##22	ENSOKIG00005037461	afap1l1b (ENSOKIG00005037475)	grpel2 (ENSOKIG00005037510)	nhp2 (ENSOKIG00005037534)	foxi3a (ENSOKIG00005037555)	ENSOKIG00005037572	ENSOKIG00005037642	zmat2 (ENSOKIG00005037681)	slbp2 (ENSOKIG00005037748)	fam53c (ENSOKIG00005037756)	ENSOKIG00005037784	ENSOKIG00005037894	ENSOKIG00005038054	ENSOKIG00005038074	timd4 (ENSOKIG00005038103)
Rainbow trout	MODERN SPECIES	1	BNIP1 (ENSOMYG00000031293)	CREBRF (ENSOMYG00000031280)	ATP6V0E1 (ENSOMYG00000052848)	ENSOMYG00000031043	ENSOMYG00000030826	CLINT1 (ENSOMYG00000069962)	ENSOMYG00000068243	ENSOMYG00000075590	EBF1 (ENSOMYG00000075841)	RNF145 (ENSOMYG00000017690)	UBLCP1 (ENSOMYG00000017671)	IL12B (ENSOMYG00000017650)	ENSOMYG00000068494	ubtd2 (ENSOMYG00000064167)	adrb2b (ENSOMYG00000012647)	ABLIM3 (ENSOMYG00000065012) ##22	afap1l1b (ENSOMYG00000018410)	grpel2 (ENSOMYG00000018397)	nhp2 (ENSOMYG00000018371)	foxi3a (ENSOMYG00000018364)	ENSOMYG00000018338	slbp2 (ENSOMYG00000018216)	zmat2 (ENSOMYG00000018246)	ENSOMYG00000018199	ENSOMYG00000018078	ENSOMYG00000017991	ENSOMYG00000056702	ENSOMYG00000049711	ENSOMYG00000017961	timd4 (ENSOMYG00000017954)	havcr1 (ENSOMYG00000017947)
Salmo	ANCESTRAL SPECIES	17	ENSGT00940000154998.a.a.w	ENSGT00940000156198.c.b.d	ENSGT00390000005989.a.b.a.b.a	ENSGT00390000014412.k.a	ENSGT00390000007125.b.a	ENSGT00940000156866.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.b	ENSGT00940000157770.a.b	ENSGT00940000155650.a.b.c.b	ENSGT00950000182859.A.a.b.b.c.a.b	ENSGT00940000157281.v	ENSGT00390000010107.v	ENSGT00390000012630.A.a.b	ENSGT00940000156641.m.b	ENSGT00940000159538.g.b.b	ENSGT00950000182850.a.b.a.b.b.o ##22	ENSGT00950000183067.a.b.a.c.e.b	ENSGT00390000005589.a.b.q	ENSGT00550000074939.a	ENSGT00940000164576.b.a.b.c	ENSGT00940000156835.l.b.b	ENSGT00390000010712	ENSGT00940000164705.f	ENSGT00530000063371.C.a.c	ENSGT00940000157061.b.k.b.a	ENSGT00940000168356	ENSGT00940000165075.a.b.a.a	ENSGT00940000163509.b.g	ENSGT00940000163509.a.a.a.q.a	ENSGT00940000161609	ENSGT00940000156944.a.a.g
Atlantic salmon	MODERN SPECIES	23	CPEB4 (ENSSSAG00000079086)	FA44B (ENSSSAG00000079334)	STC2 (ENSSSAG00000079338)	BNIP1 (ENSSSAG00000079340)	CREBRF (ENSSSAG00000079350)	ATP6V0E1 (ENSSSAG00000115307)	ENSSSAG00000106518	ENSSSAG00000079669	CLINT1 (ENSSSAG00000079767)	EBF1 (ENSSSAG00000079780)	RNF145 (ENSSSAG00000079811)	UBLCP1 (ENSSSAG00000079817)	IL12B (ENSSSAG00000079839)	ubtd2 (ENSSSAG00000096167)	adrb2b (ENSSSAG00000110588)	ABLIM3 (ENSSSAG00000079852) ##22	afap1l1b (ENSSSAG00000079915)	grpel2 (ENSSSAG00000079928)	nhp2 (ENSSSAG00000098655)	foxi3a (ENSSSAG00000092072)	LCP2 (ENSSSAG00000079937)	zmat2 (ENSSSAG00000079943)	slbp2 (ENSSSAG00000079947)	fam53c (ENSSSAG00000079951)	ENSSSAG00000089832	ENSSSAG00000080159	ENSSSAG00000080169	timd4 (ENSSSAG00000087400)	havcr1 (ENSSSAG00000080172)	ENSSSAG00000080174	ADRA1B (ENSSSAG00000080175)
River trout	MODERN SPECIES	10	CPEB4 (ENSSTUG00000004949)	bod1 (ENSSTUG00000004914)	STC2 (ENSSTUG00000004904)	BNIP1 (ENSSTUG00000004871)	CREBRF (ENSSTUG00000004839)	ATP6V0E1 (ENSSTUG00000004829)	ENSSTUG00000004825	ENSSTUG00000004656	TCERG1 (ENSSTUG00000004428)	CLINT1 (ENSSTUG00000004381)	RNF145 (ENSSTUG00000004290)	UBLCP1 (ENSSTUG00000004208)	IL12B (ENSSTUG00000004099)	ubtd2 (ENSSTUG00000004054)	adrb2b (ENSSTUG00000004048)	ablim3 (ENSSTUG00000003154) ##22	afap1l1b (ENSSTUG00000003044)	grpel2 (ENSSTUG00000003032)	nhp2 (ENSSTUG00000003023)	foxi3a (ENSSTUG00000003014)	ENSSTUG00000002942	zmat2 (ENSSTUG00000002672)	slbp2 (ENSSTUG00000002198)	fam53c (ENSSTUG00000036624)	ENSSTUG00000036388	ENSSTUG00000036268	ENSSTUG00000036253	timd4 (ENSSTUG00000036245)	ENSSTUG00000036228	ADRA1B (ENSSTUG00000036211)	ttc1 (ENSSTUG00000036193)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5661																ENSHHUG00000030452 ##22
Huchen	MODERN SPECIES	4420																ENSHHUG00000044300 ##22	ENSHHUG00000044303
Salmoninae	ANCESTRAL SPECIES	584									ENSGT00950000182859.A.a.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b	ENSGT00940000157281.u	ENSGT00390000010107.u	ENSGT00390000012630.A.a.a	ENSGT00940000156641.m.a	ENSGT00940000159538.g.b.a	ENSGT00950000182850.a.b.a.b.b.p ##22	ENSGT00950000183067.a.b.a.c.e.a	ENSGT00390000005589.a.b.r	ENSGT00550000074939.b	ENSGT00940000164576.b.a.b.d	ENSGT00940000156835.l.b.a	ENSGT00940000164705.e	ENSGT00530000063371.C.a.d	ENSGT00940000157061.b.k.b.b
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00390000007125.b.b	ENSGT00990000214210	ENSGT00390000011206.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.a	ENSGT00940000157770.a.a	ENSGT00940000161042	ENSGT00940000155650.a.b.c.a	ENSGT00950000182859.A.a.b.b.c.a.a	ENSGT00950000182859.A.a.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b	ENSGT00940000157281.u	ENSGT00390000010107.u	ENSGT00390000012630.A.a.a	ENSGT00940000156641.m.a	ENSGT00940000159538.g.b.a	ENSGT00950000182850.a.b.a.b.b.p ##22	ENSGT00950000183067.a.b.a.c.e.a	ENSGT00390000005589.a.b.r	ENSGT00550000074939.b	ENSGT00940000164576.b.a.b.d	ENSGT00940000156835.l.b.a	ENSGT00940000164705.e	ENSGT00530000063371.C.a.d	ENSGT00940000157061.b.k.b.b	ENSGT00940000165075.a.b.a.b	ENSGT00940000163509.b.h	ENSGT00940000163509.a.a.a.q.b	ENSGT00940000159345	ENSGT00940000156944.a.a.h	ENSGT00940000157213.m	ENSGT00940000157692.s
Salmo	ANCESTRAL SPECIES	44	ENSGT00390000007125.b.b	ENSGT00990000214210	ENSGT00390000011206.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.a	ENSGT00940000157770.a.a	ENSGT00940000161042	ENSGT00940000155650.a.b.c.a	ENSGT00950000182859.A.a.b.b.c.a.a	ENSGT00950000182859.A.a.a.a.e	ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b	ENSGT00940000157281.u	ENSGT00390000010107.u	ENSGT00390000012630.A.a.a	ENSGT00940000156641.m.a	ENSGT00940000159538.g.b.a	ENSGT00950000182850.a.b.a.b.b.p ##22	ENSGT00950000183067.a.b.a.c.e.a	ENSGT00390000005589.a.b.r	ENSGT00550000074939.b	ENSGT00940000164576.b.a.b.d	ENSGT00940000156835.l.b.a	ENSGT00940000164705.e	ENSGT00530000063371.C.a.d	ENSGT00940000157061.b.k.b.b	ENSGT00940000165075.a.b.a.b	ENSGT00940000163509.b.h	ENSGT00940000163509.a.a.a.q.b	ENSGT00940000159345	ENSGT00940000156944.a.a.h	ENSGT00940000157213.m	ENSGT00940000157692.s
Atlantic salmon	MODERN SPECIES	4	BNIP1 (ENSSSAG00000108295)	CREBRF (ENSSSAG00000073887)	ENSSSAG00000073883	ENSSSAG00000086568	ENSSSAG00000103687	ENSSSAG00000073861	ENSSSAG00000072917	ENSSSAG00000072867	CLINT1 (ENSSSAG00000072862)	ebf1 (ENSSSAG00000070298)	RNF145 (ENSSSAG00000069680)	UBLCP1 (ENSSSAG00000069642)	IL12p40b2 (ENSSSAG00000069633)	ubtd2 (ENSSSAG00000069624)	adrb2b (ENSSSAG00000100403)	ABLIM3 (ENSSSAG00000069535) ##22	afap1l1b (ENSSSAG00000069515)	nola2 (ENSSSAG00000069506)	foxi3a (ENSSSAG00000090123)	lcp2 (ENSSSAG00000069494)	ENSSSAG00000069491	fam53c (ENSSSAG00000095597)	ctbp2 (ENSSSAG00000069412)	ENSSSAG00000069406	timd4 (ENSSSAG00000116308)	havcr1 (ENSSSAG00000120312)	havcr1 (ENSSSAG00000069384)	ENSSSAG00000069377	ADRA1B (ENSSSAG00000069371)	ttc1 (ENSSSAG00000069365)	pwwp2a (ENSSSAG00000087301)
River trout	MODERN SPECIES	6	CREBRF (ENSSTUG00000012271)	ENSSTUG00000012264	PCYOX1L (ENSSTUG00000012245)	ENSSTUG00000012111	TCERG1 (ENSSTUG00000011818)	ENSSTUG00000011800	CLINT1 (ENSSTUG00000011752)	ENSSTUG00000011744	EBF1 (ENSSTUG00000011739)	RNF145 (ENSSTUG00000011631)	UBLCP1 (ENSSTUG00000011536)	IL12B (ENSSTUG00000011518)	ENSSTUG00000011515	ubtd2 (ENSSTUG00000011499)	adrb2b (ENSSTUG00000011494)	ablim3 (ENSSTUG00000011402) ##22	afap1l1b (ENSSTUG00000011335)	grpel2 (ENSSTUG00000011320)	nhp2 (ENSSTUG00000011301)	foxi3a (ENSSTUG00000011289)	ENSSTUG00000011244	slbp2 (ENSSTUG00000011232)	fam53c (ENSSTUG00000011224)	ENSSTUG00000011088	ENSSTUG00000011077	ENSSTUG00000011068	timd4 (ENSSTUG00000011064)	havcr1 (ENSSTUG00000011041)	ENSSTUG00000011032	ADRA1B (ENSSTUG00000011029)	ttc1 (ENSSTUG00000011019)
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00390000005989.a.b.a.b.b	ENSGT00390000014412.k.b	ENSGT00390000007125.b.b	ENSGT00990000214210	ENSGT00390000011206.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.a	ENSGT00940000157770.a.a	ENSGT00940000161042.d	ENSGT00940000155650.a.b.c.a	ENSGT00950000182859.A.a.b.b.c.a.a	ENSGT00940000157281.u	ENSGT00390000010107.u	ENSGT00390000012630.A.a.a	ENSGT00940000156641.m.a	ENSGT00940000159538.g.b.a	ENSGT00950000182850.a.b.a.b.b.p ##22	ENSGT00950000183067.a.b.a.c.e.a	ENSGT00390000005589.a.b.r	ENSGT00550000074939.b	ENSGT00940000164576.b.a.b.d	ENSGT00940000156835.l.b.a	ENSGT00530000063371.C.a.d	ENSGT00940000157061.b.k.b.b	ENSGT00940000165075.a.b.a.b	ENSGT00940000163509.b.h	ENSGT00940000163509.a.a.a.q.b	ENSGT00940000159345	ENSGT00940000156944.a.a.h	ENSGT00940000157213.m	ENSGT00940000157692.s	ENSGT00940000157139.b.e
Rainbow trout	MODERN SPECIES	3	CREBRF (ENSOMYG00000016119)	ENSOMYG00000016135	ENSOMYG00000016147	ENSOMYG00000016167	ENSOMYG00000016176	ENSOMYG00000016303	CLINT1 (ENSOMYG00000016310)	EBF1 (ENSOMYG00000016373)	ENSOMYG00000053188	RNF145 (ENSOMYG00000017078)	UBLCP1 (ENSOMYG00000017128)	il-12B2 (ENSOMYG00000017163)	ENSOMYG00000049547	ubtd2 (ENSOMYG00000017184)	adrb2b (ENSOMYG00000017194)	ABLIM3 (ENSOMYG00000017213) ##22	afap1l1b (ENSOMYG00000017287)	grpel2 (ENSOMYG00000017377)	ENSOMYG00000071550	nhp2 (ENSOMYG00000075157)	ENSOMYG00000017396	foxi3a (ENSOMYG00000017410)	ENSOMYG00000017430	ENSOMYG00000017464	ENSOMYG00000017514	ENSOMYG00000052705	havcr1 (ENSOMYG00000017688)	timd4 (ENSOMYG00000017656)	ENSOMYG00000017713	ADRA1B (ENSOMYG00000017725)	ttc1 (ENSOMYG00000017732)
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000156198.c.b.c	ENSGT00390000005989.a.b.a.b.b	ENSGT00390000014412.k.b	ENSGT00390000007125.b.b	ENSGT00390000011206.b	ENSGT00950000182864.a.b.b.a.b.a.b.a.a	ENSGT00940000157770.a.a	ENSGT00940000161042.d	ENSGT00940000155650.a.b.c.a	ENSGT00950000182859.A.a.b.b.c.a.a	ENSGT00940000157281.u	ENSGT00390000010107.u	ENSGT00390000012630.A.a.a	ENSGT00940000156641.m.a	ENSGT00940000159538.g.b.a	ENSGT00950000182850.a.b.a.b.b.p ##22	ENSGT00950000183067.a.b.a.c.e.a	ENSGT00390000005589.a.b.r	ENSGT00550000074939.b	ENSGT00940000164576.b.a.b.d	ENSGT00530000063371.C.a.d	ENSGT00940000157061.b.k.b.b	ENSGT00940000165075.a.b.a.b	ENSGT00940000163509.b.h	ENSGT00940000163509.a.a.a.q.b	ENSGT00940000159345	ENSGT00940000156944.a.a.h	ENSGT00940000157213.m	ENSGT00940000157692.s	ENSGT00940000157139.b.e	ENSGT00940000159349.e.b.b
Coho salmon	MODERN SPECIES	26	bod1 (ENSOKIG00005050285)	STC2 (ENSOKIG00005050291)	BNIP1 (ENSOKIG00005050293)	CREBRF (ENSOKIG00005001682)	PCYOX1L (ENSOKIG00005001695)	ENSOKIG00005001711	TCERG1 (ENSOKIG00005001795)	ENSOKIG00005001865	CLINT1 (ENSOKIG00005001894)	EBF1 (ENSOKIG00005001939)	RNF145 (ENSOKIG00005002040)	UBLCP1 (ENSOKIG00005002126)	IL12B (ENSOKIG00005002154)	ubtd2 (ENSOKIG00005002179)	adrb2b (ENSOKIG00005002209)	ABLIM3 (ENSOKIG00005002317) ##22	afap1l1b (ENSOKIG00005002733)	ENSOKIG00005002782	foxi3a (ENSOKIG00005002795)	ENSOKIG00005002814	ENSOKIG00005002826	ENSOKIG00005002877	timd4 (ENSOKIG00005002884)	ENSOKIG00005002891	ENSOKIG00005002899	ADRA1B (ENSOKIG00005002911)	ttc1 (ENSOKIG00005002924)	PWWP2A (ENSOKIG00005002931)	fabp6 (ENSOKIG00005002935)	ccnjl (ENSOKIG00005002948)	slc23a1 (ENSOKIG00005003006)
Chinook salmon	MODERN SPECIES	33	STC2 (ENSOTSG00005047595)	BNIP1 (ENSOTSG00005005730)	CREBRF (ENSOTSG00005005738)	ENSOTSG00005005747	PCYOX1L (ENSOTSG00005005777)	ENSOTSG00005005782	TCERG1 (ENSOTSG00005005804)	ENSOTSG00005005967	CLINT1 (ENSOTSG00005005969)	EBF1 (ENSOTSG00005005972)	RNF145 (ENSOTSG00005005977)	UBLCP1 (ENSOTSG00005006034)	IL12B (ENSOTSG00005006037)	ubtd2 (ENSOTSG00005006038)	adrb2b (ENSOTSG00005006040)	ablim3 (ENSOTSG00005006050) ##22	afap1l1b (ENSOTSG00005007463)	ENSOTSG00005007466	grpel2 (ENSOTSG00005007469)	nhp2 (ENSOTSG00005007470)	foxi3a (ENSOTSG00005007472)	fam53c (ENSOTSG00005007473)	ENSOTSG00005007480	ENSOTSG00005007735	timd4 (ENSOTSG00005007736)	havcr1 (ENSOTSG00005007738)	ENSOTSG00005007740	ENSOTSG00005007741	ADRA1B (ENSOTSG00005007743)	ttc1 (ENSOTSG00005007745)	PWWP2A (ENSOTSG00005007747)
Huchen	MODERN SPECIES	1964															ENSHHUG00000027126	ablim3 (ENSHHUG00000027116) ##22	afap1l1b (ENSHHUG00000027100)	grpel2 (ENSHHUG00000027093)	nhp2 (ENSHHUG00000027079)	foxi3a (ENSHHUG00000027076)	ENSHHUG00000027055	slbp2 (ENSHHUG00000027048)	fam53c (ENSHHUG00000027045)	ENSHHUG00000026944
Northern pike	MODERN SPECIES	6	STC2 (ENSELUG00000029462)	BNIP1 (ENSELUG00000028774)	CREBRF (ENSELUG00000022756)	ATP6V0E1 (ENSELUG00000025753)	PCYOX1L (ENSELUG00000022655)	PPP2R2B (ENSELUG00000022606)	TCERG1 (ENSELUG00000022544)	ENSELUG00000022471	CLINT1 (ENSELUG00000022458)	EBF1 (ENSELUG00000022383)	rnf145b (ENSELUG00000022258)	ublcp1 (ENSELUG00000022212)	IL12B (ENSELUG00000022176)	ubtd2 (ENSELUG00000022138)	adrb2b (ENSELUG00000022105)	ablim3 (ENSELUG00000022091) ##22	afap1l1b (ENSELUG00000022026)	grpel2 (ENSELUG00000022001)	nhp2 (ENSELUG00000021981)	foxi3a (ENSELUG00000021971)	ENSELUG00000021946	zmat2 (ENSELUG00000021857)	slbp2 (ENSELUG00000021799)	fam53c (ENSELUG00000021751)	ENSELUG00000021723	ENSELUG00000021690	ENSELUG00000028611	timd4 (ENSELUG00000021681)	havcr1 (ENSELUG00000032372)	havcr1 (ENSELUG00000021665)	havcr1 (ENSELUG00000021632)
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES	20	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000156198.c.b	ENSGT00390000005989.a.b.a.b	ENSGT00390000014412.k	ENSGT00390000007125.b	ENSGT00390000011206.b	ENSGT00940000157770	ENSGT00940000161042	ENSGT00940000155650.a.b	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
NAME_4	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Sheepshead minnow	MODERN SPECIES	225	ENSCVAG00000001468	MSS51 (ENSCVAG00000001472)	MSS51 (ENSCVAG00000001479)	CAPN15 (ENSCVAG00000001490)	ENSCVAG00000001497	nog2 (ENSCVAG00000001502)	ntn2 (ENSCVAG00000001511)	ENSCVAG00000001524	TBC1D24 (ENSCVAG00000001532)	ATP6V0C (ENSCVAG00000001537)	nubp2 (ENSCVAG00000001546)	ENSCVAG00000001550	ENSCVAG00000001554	ENSCVAG00000001563	ablim1b (ENSCVAG00000000059) ##22	ENSCVAG00000001574 ##22	MPRIP (ENSCVAG00000000066)	ENSCVAG00000001622	ENSCVAG00000001625	crp2 (ENSCVAG00000001629)	stub1 (ENSCVAG00000001632)	metrn (ENSCVAG00000001637)	tmem204 (ENSCVAG00000001643)	IFT140 (ENSCVAG00000001657)	telo2 (ENSCVAG00000001665)	rab11fip3 (ENSCVAG00000001674)	decr2 (ENSCVAG00000001681)	RDH13 (ENSCVAG00000001685)	SBK1 (ENSCVAG00000001689)	ENSCVAG00000001691	ENSCVAG00000001694
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b.b ##22
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000011206.b	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT00390000007125.b	ENSGT00390000014412.k	ENSGT00390000005989.a.b.a.b	ENSGT00940000156198.c.b	ENSGT00390000009902	ENSGT00950000182859.A.a.b.b.d.c.b	ENSGT00940000157281	ENSGT00390000010107	ENSGT00390000012630.A.a	ENSGT00940000156641	ENSGT00940000159538.h	ENSGT00950000182850.a.b.a.b.a.a ##22	ENSGT00950000182850.a.b.a.b.b ##22	ENSGT00950000183067.a.b.a.c	ENSGT00940000162313.b	ENSGT00940000159516	ENSGT00940000156974.e.b	ENSGT00950000182887.C.b.b.a	ENSGT00390000013169	ENSGT00940000153370.a.a	ENSGT00940000161027.a	ENSGT00390000004124.i	ENSGT00940000156996.f.b	ENSGT00390000007335	ENSGT00940000165459.b	ENSGT00940000157436.b	ENSGT00950000183068.a.a.a.a	ENSGT00940000165121.a
Large yellow croaker	MODERN SPECIES	493	ncam1a (ENSLCRG00005014298)	zbtb16a (ENSLCRG00005014289)	HTR3A (ENSLCRG00005014249)	HTR3B (ENSLCRG00005014248)	USP28 (ENSLCRG00005013073)	orai2 (ENSLCRG00005013052)	bckdk (ENSLCRG00005013039)	lrwd1 (ENSLCRG00005013031)	alkbh4 (ENSLCRG00005013029)	CBL (ENSLCRG00005012940)	ENSLCRG00005012919	tmem120aa (ENSLCRG00005012358)	ENSLCRG00005012353	ADRB2 (ENSLCRG00005019541)	ENSLCRG00005019539	ABLIM3 (ENSLCRG00005019538) ##22	fgf13b (ENSLCRG00005019464)	f9b (ENSLCRG00005019337)	MCF2 (ENSLCRG00005018752)	arr3a (ENSLCRG00005018717)	znrd2 (ENSLCRG00005018715)	FAM89B (ENSLCRG00005018713)	ENSLCRG00005018711	afap1l1b (ENSLCRG00005018707)	dpp3 (ENSLCRG00005018553)	ENSLCRG00005018551	ENSLCRG00005018549	rbm14a (ENSLCRG00005018544)	ENSLCRG00005018539	ENSLCRG00005018538	ENSLCRG00005018537
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182850.a.b.a.b ##22
Lamprey	MODERN SPECIES	1828																ENSPMAG00000005668 ##22
Hagfish	MODERN SPECIES	797									ENSEBUG00000000319	adrb1 (ENSEBUG00000006164)	ENSEBUG00000015249	ENSEBUG00000014474	fhip2a (ENSEBUG00000007241) ##23	FNTA (ENSEBUG00000016337)	ENSEBUG00000007420	ENSEBUG00000011677 ##22	ENSEBUG00000001164 #22	ENSEBUG00000007146