Murinae	ANCESTRAL SPECIES	2	ENSGT00940000157630.a.b	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000161688.f.b.a.b ##11	ENSGT00940000154712.c.a.b.b #16	ENSGT00940000154469.a.a.a.a.a.b #17	ENSGT00390000003768 #18	ENSGT00390000013727.c #19	ENSGT01030000234558.A.a.a.b #20	ENSGT00390000007643 #21	ENSGT00940000154513.A #22	ENSGT00940000154513.B #23	ENSGT00940000159291 #24	ENSGT00390000012490 #25	ENSGT00390000017402 #26	ENSGT00390000013828 #27	ENSGT00940000153395.b #29	ENSGT00940000159980 #30	ENSGT00940000159408 #31	ENSGT00940000160929 #32	ENSGT00940000157931 #33	ENSGT00390000012439 #34	ENSGT00930000151037 #35	ENSGT00940000157064.a.a #36	ENSGT00390000015408 #37	ENSGT00870000136521
Rat	MODERN SPECIES	15	ENSRNOG00000070363 #7	LOC500584 (ENSRNOG00000063088) #8	ENSRNOG00000070082 #9	Rex2 (ENSRNOG00000062461) #10	ENSRNOG00000063649 #11	ENSRNOG00000070045 #12	ENSRNOG00000068633 #13	RGD1565622 (ENSRNOG00000033792) #14	ENSRNOG00000068760 #15	RGD1565622 (ENSRNOG00000062859) #16	Zfp933 (ENSRNOG00000056374) #17	Miip (ENSRNOG00000024139) #18	Mfn2 (ENSRNOG00000046424) #19	Plod1 (ENSRNOG00000007763) #20	Kiaa2013 (ENSRNOG00000007968) #21	Nppb (ENSRNOG00000008141) #22	Nppa (ENSRNOG00000008176) #23	Clcn6 (ENSRNOG00000008345) #24	Mthfr (ENSRNOG00000008553) #25	Agtrap (ENSRNOG00000008619) #26	Draxin (ENSRNOG00000008911) #27	Rpl35a (ENSRNOG00000031641) #28	Mad2l2 (ENSRNOG00000009134) #29	Fbxo6 (ENSRNOG00000009217) #30	Fbxo44 (ENSRNOG00000009298) #31	Fbxo2 (ENSRNOG00000009409) #32	Disp3 (ENSRNOG00000026447) #33	Ubiad1 (ENSRNOG00000009575) #34	Mtor (ENSRNOG00000009615) #35	Angptl7 (ENSRNOG00000009589) #36	Exosc10 (ENSRNOG00000010719) #37
Mus	ANCESTRAL SPECIES	3	ENSGT00940000157630.a.b	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000161688.f.b.a.b ##11	ENSGT00940000154712.c.a.b.b #16	ENSGT00940000154469.a.a.a.a.a.b #17	ENSGT00390000003768 #18	ENSGT00390000013727.c #19	ENSGT01030000234558.A.a.a.b #20	ENSGT00390000007643 #21	ENSGT00940000154513.A #22	ENSGT00940000154513.B #23	ENSGT00940000159291 #24	ENSGT00390000012490 #25	ENSGT00390000017402 #26	ENSGT00390000013828 #27	ENSGT00940000153395.b #29	ENSGT00940000159980 #30	ENSGT00940000159408 #31	ENSGT00940000160929 #32	ENSGT00940000157931 #33	ENSGT00390000012439 #34	ENSGT00930000151037 #35	ENSGT00940000157064.a.a #36	ENSGT00390000015408 #37	ENSGT00870000136521
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000157630.a.b	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000161688.f.b.a.b ##11	ENSGT00940000154712.c.a.b.b #16	ENSGT00940000154469.a.a.a.a.a.b #17	ENSGT00390000003768 #18	ENSGT00390000013727.c #19	ENSGT01030000234558.A.a.a.b #20	ENSGT00390000007643 #21	ENSGT00940000154513.A #22	ENSGT00940000154513.B #23	ENSGT00940000159291 #24	ENSGT00390000012490 #25	ENSGT00390000017402 #26	ENSGT00390000013828 #27	ENSGT00940000153395.b #29	ENSGT00940000159980 #30	ENSGT00940000159408 #31	ENSGT00940000160929 #32	ENSGT00940000157931 #33	ENSGT00390000012439 #34	ENSGT00930000151037 #35	ENSGT00940000157064.a.a #36	ENSGT00390000015408 #37	ENSGT00870000136521
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000154712.c.a.b.b.d.a.a.a.a #16	ENSGT00940000154712.c.a.b.b.d.a.a.a.b #16	ENSGT00940000154469.a.a.a.a.a.b #17	ENSGT00390000003768 #18	ENSGT00940000168197	ENSGT00390000013727.c #19	ENSGT01030000234558.A.a.a.b #20	ENSGT00390000007643 #21	ENSGT00940000154513.A #22	ENSGT00940000154513.B #23	ENSGT00940000159291 #24	ENSGT00390000012490 #25	ENSGT00390000017402 #26	ENSGT00390000013828 #27	ENSGT00940000153395.b #29	ENSGT00940000159980 #30	ENSGT00940000159408 #31	ENSGT00940000160929 #32	ENSGT00940000157931 #33	ENSGT00390000012439 #34	ENSGT00930000151037 #35	ENSGT00940000157064.a.a #36	ENSGT00390000015408 #37	ENSGT00870000136521
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000163565	ENSGT00940000157630.a.b	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000154469.a.a.a.a.a.b #17	ENSGT00390000003768 #18	ENSGT00940000168197	ENSGT00390000013727.c #19	ENSGT01030000234558.A.a.a.b #20	ENSGT00390000007643 #21	ENSGT00940000154513.A #22	ENSGT00940000154513.B #23	ENSGT00940000159291 #24	ENSGT00390000012490 #25	ENSGT00390000017402 #26	ENSGT00390000013828 #27	ENSGT00940000153395.b #29	ENSGT00940000159980 #30	ENSGT00940000159408 #31	ENSGT00940000160929 #32	ENSGT00940000157931 #33	ENSGT00390000012439 #34	ENSGT00930000151037 #35	ENSGT00940000157064.a.a #36	ENSGT00390000015408 #37	ENSGT00870000136521
spretus	MODERN SPECIES	13	Aadacl4fm2 (MGP_SPRETEiJ_G0027766)	MGP_SPRETEiJ_G0027767	Aadacl4fm4 (MGP_SPRETEiJ_G0027768)	AAdacl4fm3 (MGP_SPRETEiJ_G0027769)	Aadacl4fm5 (MGP_SPRETEiJ_G0027770)	Dhrs3 (MGP_SPRETEiJ_G0027771)	Vps13d (MGP_SPRETEiJ_G0027772)	Tnfrsf1b (MGP_SPRETEiJ_G0027773)	Tnfrsf8 (MGP_SPRETEiJ_G0027774)	Zfp933 (MGP_SPRETEiJ_G0027775) #17	Miip (MGP_SPRETEiJ_G0027776) #18	Fv1 (MGP_SPRETEiJ_G0027777)	Mfn2 (MGP_SPRETEiJ_G0027778) #19	Plod1 (MGP_SPRETEiJ_G0027779) #20	2510039O18Rik (MGP_SPRETEiJ_G0027780) #21	Nppb (MGP_SPRETEiJ_G0027781) #22	Nppa (MGP_SPRETEiJ_G0027782) #23	Clcn6 (MGP_SPRETEiJ_G0027783) #24	Mthfr (MGP_SPRETEiJ_G0027784) #25	Agtrap (MGP_SPRETEiJ_G0027785) #26	Draxin (MGP_SPRETEiJ_G0027786) #27	Mad2l2 (MGP_SPRETEiJ_G0027787) #29	Fbxo6 (MGP_SPRETEiJ_G0027788) #30	Fbxo44 (MGP_SPRETEiJ_G0027789) #31	Fbxo2 (MGP_SPRETEiJ_G0027790) #32	Disp3 (MGP_SPRETEiJ_G0027791) #33	Ubiad1 (MGP_SPRETEiJ_G0027792) #34	Mtor (MGP_SPRETEiJ_G0027793) #35	Angptl7 (MGP_SPRETEiJ_G0027794) #36	Exosc10 (MGP_SPRETEiJ_G0027795) #37	Srm (MGP_SPRETEiJ_G0027796)
Steppe mouse	MODERN SPECIES	3147											Zfp933 (ENSMSIG00000010977) #17	Miip (ENSMSIG00000011005) #18	Mfn2 (ENSMSIG00000011070) #19	Plod1 (ENSMSIG00000011130) #20	2510039O18Rik (ENSMSIG00000011176) #21	Nppb (ENSMSIG00000011201) #22	Nppa (ENSMSIG00000011213) #23	Clcn6 (ENSMSIG00000011225) #24	Mthfr (ENSMSIG00000011288) #25	Agtrap (ENSMSIG00000011355) #26	ENSMSIG00000011372	Draxin (ENSMSIG00000011398) #27	Mad2l2 (ENSMSIG00000011418) #29	ENSMSIG00000011464 #31	Fbxo2 (ENSMSIG00000011541) #32	Disp3 (ENSMSIG00000011555) #33	Ubiad1 (ENSMSIG00000011575) #34	Mtor (ENSMSIG00000011592) #35	Angptl7 (ENSMSIG00000011805) #36	Exosc10 (ENSMSIG00000011825) #37	Srm (ENSMSIG00000011893)
Mouse	MODERN SPECIES	13	Rex2 (ENSMUSG00000067919) #16	Zfp991 (ENSMUSG00000067916) #16	Zfp988 (ENSMUSG00000078498) #16	Zfp978 (ENSMUSG00000078497) #16	Zfp982 (ENSMUSG00000078496) ##11	Zfp985 (ENSMUSG00000065999) #16	Zfp979 (ENSMUSG00000066000) #16	Zfp534 (ENSMUSG00000062518) #16	Zfp984 (ENSMUSG00000078495) #16	Zfp933 (ENSMUSG00000059423) #17	Miip (ENSMUSG00000029022) #18	Fv1 (ENSMUSG00000070583)	Mfn2 (ENSMUSG00000029020) #19	Plod1 (ENSMUSG00000019055) #20	2510039O18Rik (ENSMUSG00000044496) #21	Nppb (ENSMUSG00000029019) #22	Nppa (ENSMUSG00000041616) #23	Clcn6 (ENSMUSG00000029016) #24	Mthfr (ENSMUSG00000029009) #25	Agtrap (ENSMUSG00000029007) #26	Draxin (ENSMUSG00000029005) #27	Mad2l2 (ENSMUSG00000029003) #29	Fbxo6 (ENSMUSG00000055401) #30	Fbxo44 (ENSMUSG00000029001) #31	Fbxo2 (ENSMUSG00000041556) #32	Disp3 (ENSMUSG00000041544) #33	Ubiad1 (ENSMUSG00000047719) #34	Mtor (ENSMUSG00000028991) #35	Angptl7 (ENSMUSG00000028989) #36	Exosc10 (ENSMUSG00000017264) #37	Srm (ENSMUSG00000006442)
Ryukyu mouse	MODERN SPECIES	13	Aadacl4fm1 (MGP_CAROLIEiJ_G0026773)	Aadacl4fm2 (MGP_CAROLIEiJ_G0026774)	Aadacl4 (MGP_CAROLIEiJ_G0026775)	Aadacl4fm4 (MGP_CAROLIEiJ_G0026776)	AAdacl4fm3 (MGP_CAROLIEiJ_G0026777)	Aadacl4fm5 (MGP_CAROLIEiJ_G0026778)	Dhrs3 (MGP_CAROLIEiJ_G0026779)	Vps13d (MGP_CAROLIEiJ_G0026780)	Tnfrsf1b (MGP_CAROLIEiJ_G0026781)	Tnfrsf8 (MGP_CAROLIEiJ_G0026782)	MGP_CAROLIEiJ_G0026783 ##17	Miip (MGP_CAROLIEiJ_G0026784) #18	Mfn2 (MGP_CAROLIEiJ_G0026785) #19	Plod1 (MGP_CAROLIEiJ_G0026786) #20	2510039O18Rik (MGP_CAROLIEiJ_G0026787) #21	Nppb (MGP_CAROLIEiJ_G0026788) #22	Nppa (MGP_CAROLIEiJ_G0026789) #23	Clcn6 (MGP_CAROLIEiJ_G0026790) #24	Mthfr (MGP_CAROLIEiJ_G0026791) #25	Agtrap (MGP_CAROLIEiJ_G0026792) #26	Draxin (MGP_CAROLIEiJ_G0026793) #27	MGP_CAROLIEiJ_G0026794 #29	Fbxo6 (MGP_CAROLIEiJ_G0026795) #30	Fbxo44 (MGP_CAROLIEiJ_G0026796) #31	Fbxo2 (MGP_CAROLIEiJ_G0026797) #32	Disp3 (MGP_CAROLIEiJ_G0026798) #33	Ubiad1 (MGP_CAROLIEiJ_G0026799) #34	Mtor (MGP_CAROLIEiJ_G0026800) #35	Angptl7 (MGP_CAROLIEiJ_G0026801) #36	Exosc10 (MGP_CAROLIEiJ_G0026802) #37	Srm (MGP_CAROLIEiJ_G0026803)
Shrew mouse	MODERN SPECIES	19	Aadacl4fm1 (MGP_PahariEiJ_G0029121)	Aadacl4fm2 (MGP_PahariEiJ_G0029122)	Aadacl4 (MGP_PahariEiJ_G0029123)	Aadacl4fm4 (MGP_PahariEiJ_G0029124)	AAdacl4fm3 (MGP_PahariEiJ_G0029125)	Aadacl4fm5 (MGP_PahariEiJ_G0029126)	Dhrs3 (MGP_PahariEiJ_G0029127)	Vps13d (MGP_PahariEiJ_G0029128)	Tnfrsf1b (MGP_PahariEiJ_G0029129)	Tnfrsf8 (MGP_PahariEiJ_G0029130)	MGP_PahariEiJ_G0029131 ##17	Miip (MGP_PahariEiJ_G0029132) #18	Mfn2 (MGP_PahariEiJ_G0029133) #19	Plod1 (MGP_PahariEiJ_G0029134) #20	2510039O18Rik (MGP_PahariEiJ_G0029135) #21	Nppb (MGP_PahariEiJ_G0029136) #22	Nppa (MGP_PahariEiJ_G0029137) #23	Clcn6 (MGP_PahariEiJ_G0029138) #24	Mthfr (MGP_PahariEiJ_G0029139) #25	Agtrap (MGP_PahariEiJ_G0029140) #26	Draxin (MGP_PahariEiJ_G0029141) #27	Mad2l2 (MGP_PahariEiJ_G0029142) #29	Fbxo6 (MGP_PahariEiJ_G0029143) #30	MGP_PahariEiJ_G0029144 #31	Fbxo2 (MGP_PahariEiJ_G0029145) #32	Disp3 (MGP_PahariEiJ_G0029146) #33	Ubiad1 (MGP_PahariEiJ_G0029147) #34	Mtor (MGP_PahariEiJ_G0029148) #35	Angptl7 (MGP_PahariEiJ_G0029149) #36	Exosc10 (MGP_PahariEiJ_G0029150) #37	Srm (MGP_PahariEiJ_G0029151)