Gnathostomata	ANCESTRAL SPECIES	605																ENSGT00390000017890 #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00390000006503.b #20	ENSGT00390000013419 #19	ENSGT00940000156986 #26
Euteleostomi	ANCESTRAL SPECIES	723																ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25
Sarcopterygii	ANCESTRAL SPECIES	633																ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25
Tetrapoda	ANCESTRAL SPECIES	145							ENSGT00940000153212	ENSGT00940000155803	ENSGT00940000163094	ENSGT00940000158826	ENSGT00530000063841.a	ENSGT00390000016737	ENSGT00940000156266	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00940000154630.b	ENSGT00390000017143
Amniota	ANCESTRAL SPECIES	73						ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000164512	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00940000157178	ENSGT00940000156591	ENSGT00940000157357	ENSGT01050000244968.c
Mammalia	ANCESTRAL SPECIES	27					ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00940000157178	ENSGT00940000156591	ENSGT00940000157357
Theria	ANCESTRAL SPECIES	6	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT00940000157326 #32	ENSGT00940000160287 #34
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Glires	ANCESTRAL SPECIES	8	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Rodentia	ANCESTRAL SPECIES	21	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Muroidea	ANCESTRAL SPECIES	26	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Muroidea_A	ANCESTRAL SPECIES	26	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Murinae	ANCESTRAL SPECIES	23	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Mus	ANCESTRAL SPECIES	6	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00900000143366	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00900000143366	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326.b #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326.b #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
spretus	MODERN SPECIES	17	AI429214 (MGP_SPRETEiJ_G0032103) #7	Dlc1 (MGP_SPRETEiJ_G0032102) #8	Trmt9b (MGP_SPRETEiJ_G0032101) #9	Lonrf1 (MGP_SPRETEiJ_G0032100) #10	Prag1 (MGP_SPRETEiJ_G0032099) #11	Cldn23 (MGP_SPRETEiJ_G0032098) #12	Gm19410 (MGP_SPRETEiJ_G0032097) #13	Mfhas1 (MGP_SPRETEiJ_G0032096) #14	Eri1 (MGP_SPRETEiJ_G0032095) #15	Ppp1r3b (MGP_SPRETEiJ_G0032094) #16	Tnks (MGP_SPRETEiJ_G0032093) #17	Dusp4 (MGP_SPRETEiJ_G0032092) #18	MGP_SPRETEiJ_G0032091 #19	Leprotl1 (MGP_SPRETEiJ_G0032090) #20	Mboat4 (MGP_SPRETEiJ_G0032089) #21	Dctn6 (MGP_SPRETEiJ_G0032088) #22	Rbpms (MGP_SPRETEiJ_G0032087) #23	Smim18 (MGP_SPRETEiJ_G0032086) #24	Gtf2e2 (MGP_SPRETEiJ_G0032085) #25	Gsr (MGP_SPRETEiJ_G0032084) #26	Ubxn8 (MGP_SPRETEiJ_G0032083) #27	Ppp2cb (MGP_SPRETEiJ_G0032082) #28	Tex15 (MGP_SPRETEiJ_G0032081) #29	Purg (MGP_SPRETEiJ_G0032080) #30	Wrn (MGP_SPRETEiJ_G0032079) #31	MGP_SPRETEiJ_G0032078 #32	MGP_SPRETEiJ_G0032077 #33	Fut10 (MGP_SPRETEiJ_G0032076) #34	Mak16 (MGP_SPRETEiJ_G0032075) #35	Tti2 (MGP_SPRETEiJ_G0032074) #36	Rnf122 (MGP_SPRETEiJ_G0032073) #37
Steppe mouse	MODERN SPECIES	767																ENSMSIG00000002475 #22
Mouse	MODERN SPECIES	17	Dlc1 (ENSMUSG00000031523) #8	Trmt9b (ENSMUSG00000039620) #9	Lonrf1 (ENSMUSG00000039633) #10	Prag1 (ENSMUSG00000050271) #11	Cldn23 (ENSMUSG00000055976) #12	Gm19410 (ENSMUSG00000109372) #13	Mfhas1 (ENSMUSG00000070056) #14	Eri1 (ENSMUSG00000031527) #15	Ppp1r3b (ENSMUSG00000046794) #16	Tnks (ENSMUSG00000031529) #17	Dusp4 (ENSMUSG00000031530) #18	Saraf (ENSMUSG00000031532) #19	Leprotl1 (ENSMUSG00000031513) #20	Mboat4 (ENSMUSG00000071113) #21	Gm10131 (ENSMUSG00000063412)	Dctn6 (ENSMUSG00000031516) #22	Rbpms (ENSMUSG00000031586) #23	Smim18 (ENSMUSG00000094500) #24	Gtf2e2 (ENSMUSG00000031585) #25	Gsr (ENSMUSG00000031584) #26	Ubxn8 (ENSMUSG00000052906) ##27	Ppp2cb (ENSMUSG00000009630) #28	Tex15 (ENSMUSG00000009628) #29	Purg (ENSMUSG00000049184) #30	Wrn (ENSMUSG00000031583) #31	Nrg1 (ENSMUSG00000118541)	Nrg1 (ENSMUSG00000062991) #32	Fut10 (ENSMUSG00000046152) #34	Mak16 (ENSMUSG00000031578) #35	Tti2 (ENSMUSG00000031577) #36	Rnf122 (ENSMUSG00000039328) #37
Ryukyu mouse	MODERN SPECIES	17	Dlc1 (MGP_CAROLIEiJ_G0030986) #8	Trmt9b (MGP_CAROLIEiJ_G0030985) #9	Lonrf1 (MGP_CAROLIEiJ_G0030984) #10	Prag1 (MGP_CAROLIEiJ_G0030983) #11	Cldn23 (MGP_CAROLIEiJ_G0030982) #12	Gm19410 (MGP_CAROLIEiJ_G0030981) #13	Mfhas1 (MGP_CAROLIEiJ_G0030980) #14	Eri1 (MGP_CAROLIEiJ_G0030979) #15	Ppp1r3b (MGP_CAROLIEiJ_G0030978) #16	Tnks (MGP_CAROLIEiJ_G0030977) #17	Dusp4 (MGP_CAROLIEiJ_G0030976) #18	MGP_CAROLIEiJ_G0030975	Saraf (MGP_CAROLIEiJ_G0030974) #19	Leprotl1 (MGP_CAROLIEiJ_G0030973) #20	Mboat4 (MGP_CAROLIEiJ_G0030972) #21	Dctn6 (MGP_CAROLIEiJ_G0030971) #22	Rbpms (MGP_CAROLIEiJ_G0030970) #23	Smim18 (MGP_CAROLIEiJ_G0030969) #24	Gtf2e2 (MGP_CAROLIEiJ_G0030968) #25	Gsr (MGP_CAROLIEiJ_G0030967) #26	Ubxn8 (MGP_CAROLIEiJ_G0030966) #27	Ppp2cb (MGP_CAROLIEiJ_G0030965) #28	Tex15 (MGP_CAROLIEiJ_G0030964) #29	MGP_CAROLIEiJ_G0030963	Purg (MGP_CAROLIEiJ_G0030962) #30	Wrn (MGP_CAROLIEiJ_G0030961) #31	MGP_CAROLIEiJ_G0030960 #32	MGP_CAROLIEiJ_G0030959 #32	Fut10 (MGP_CAROLIEiJ_G0030958) #34	Mak16 (MGP_CAROLIEiJ_G0030957) #35	Tti2 (MGP_CAROLIEiJ_G0030956) #36
Shrew mouse	MODERN SPECIES	10	AI429214 (MGP_PahariEiJ_G0021455) #7	Dlc1 (MGP_PahariEiJ_G0021454) #8	Trmt9b (MGP_PahariEiJ_G0021453) #9	Lonrf1 (MGP_PahariEiJ_G0021452) #10	Prag1 (MGP_PahariEiJ_G0021451) #11	Cldn23 (MGP_PahariEiJ_G0021450) #12	Gm19410 (MGP_PahariEiJ_G0021449) #13	Mfhas1 (MGP_PahariEiJ_G0021448) #14	Eri1 (MGP_PahariEiJ_G0021447) #15	Ppp1r3b (MGP_PahariEiJ_G0021446) #16	Tnks (MGP_PahariEiJ_G0021445) #17	Dusp4 (MGP_PahariEiJ_G0021444) #18	Saraf (MGP_PahariEiJ_G0021443) #19	Leprotl1 (MGP_PahariEiJ_G0021442) #20	Mboat4 (MGP_PahariEiJ_G0021441) #21	Dctn6 (MGP_PahariEiJ_G0021440) #22	Rbpms (MGP_PahariEiJ_G0021439) #23	Smim18 (MGP_PahariEiJ_G0021438) #24	Gtf2e2 (MGP_PahariEiJ_G0021437) #25	Gsr (MGP_PahariEiJ_G0021436) #26	Ubxn8 (MGP_PahariEiJ_G0021435) #27	Ppp2cb (MGP_PahariEiJ_G0021434) #28	MGP_PahariEiJ_G0021433 #29	MGP_PahariEiJ_G0021432	Purg (MGP_PahariEiJ_G0021431) #30	Wrn (MGP_PahariEiJ_G0021430) #31	MGP_PahariEiJ_G0021429 #32	MGP_PahariEiJ_G0021428 #32	Fut10 (MGP_PahariEiJ_G0021427) #34	Mak16 (MGP_PahariEiJ_G0021426) #35	Tti2 (MGP_PahariEiJ_G0021425) #36
Rat	MODERN SPECIES	7	Trmt9b (ENSRNOG00000011253) #9	ENSRNOG00000066954	Lonrf1 (ENSRNOG00000053706) #10	Prag1 (ENSRNOG00000011407) #11	Cldn23 (ENSRNOG00000011424) #12	LOC100910088 (ENSRNOG00000054809) #13	Mfhas1 (ENSRNOG00000011431) #14	Eri1 (ENSRNOG00000011448) #15	Ppp1r3b (ENSRNOG00000011474) #16	Tnks (ENSRNOG00000011625) #17	Dusp4 (ENSRNOG00000011921) #18	AABR07026048.1 (ENSRNOG00000031879)	Saraf (ENSRNOG00000012329) #19	Leprotl1 (ENSRNOG00000012601) #20	Mboat4 (ENSRNOG00000030102) #21	Dctn6 (ENSRNOG00000013254) #22	LOC100364509 (ENSRNOG00000050067)	AABR07026059.1 (ENSRNOG00000031959)	Rbpms (ENSRNOG00000013328) #23	Gtf2e2 (ENSRNOG00000014422) #25	Smim18 (ENSRNOG00000049689) #24	ENSRNOG00000070491	Gsr (ENSRNOG00000014915) #26	Ubxn8 (ENSRNOG00000015109) #27	Ppp2cb (ENSRNOG00000015182) #28	Tex15 (ENSRNOG00000007748) #29	Purg (ENSRNOG00000015426) #30	Wrn (ENSRNOG00000015440) #31	Nrg1 (ENSRNOG00000010392) #32	ENSRNOG00000070947	Fut10 (ENSRNOG00000050857) #34
Cricetidae	ANCESTRAL SPECIES	23	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Cricetinae	ANCESTRAL SPECIES	25	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Golden Hamster	MODERN SPECIES	624	ENSMAUG00000002793	Sgcz (ENSMAUG00000019739)	Dlc1 (ENSMAUG00000017179) #8	Trmt9b (ENSMAUG00000017514) #9	Lonrf1 (ENSMAUG00000019267) #10	Prag1 (ENSMAUG00000011341) #11	Cldn23 (ENSMAUG00000008935) #12	Gm19410 (ENSMAUG00000012977) #13	Eri1 (ENSMAUG00000006186) #15	Ppp1r3b (ENSMAUG00000008079) #16	Tnks (ENSMAUG00000007100) #17	Dusp4 (ENSMAUG00000018224) #18	Saraf (ENSMAUG00000007950) #19	Leprotl1 (ENSMAUG00000011224) #20	Mboat4 (ENSMAUG00000015561) #21	Dctn6 (ENSMAUG00000008454) #22	ENSMAUG00000019334	Rbpms (ENSMAUG00000018892) #23	Smim18 (ENSMAUG00000012861) #24	Gtf2e2 (ENSMAUG00000003938) #25	Gsr (ENSMAUG00000013110) #26	Ubxn8 (ENSMAUG00000013271) #27	ENSMAUG00000018928 #28	Tex15 (ENSMAUG00000013992) #29	Purg (ENSMAUG00000010214) #30	Wrn (ENSMAUG00000016235) #31	Nrg1 (ENSMAUG00000022160) #32	Fut10 (ENSMAUG00000021420) #34	Mak16 (ENSMAUG00000008496) #35	Tti2 (ENSMAUG00000016364) #36	Rnf122 (ENSMAUG00000009969) #37
Chinese hamster chok1gshd	MODERN SPECIES	1	Lonrf1 (ENSCGRG00001020250) #10	ENSCGRG00001005461	Prag1 (ENSCGRG00001023518) #11	Cldn23 (ENSCGRG00001006104) #12	Gm19410 (ENSCGRG00001024429) #13	ENSCGRG00001016163 #14	Eri1 (ENSCGRG00001017852) #15	Ppp1r3b (ENSCGRG00001005666) #16	Tnks (ENSCGRG00001020318) #17	Dusp4 (ENSCGRG00001022778) #18	ENSCGRG00001007762	ENSCGRG00001005245	Saraf (ENSCGRG00001024847) #19	Leprotl1 (ENSCGRG00001000543) #20	Mboat4 (ENSCGRG00001015723) #21	Dctn6 (ENSCGRG00001001182) #22	Rbpms (ENSCGRG00001002814) #23	Gtf2e2 (ENSCGRG00001004129) #25	Smim18 (ENSCGRG00001006260) #24	Gsr (ENSCGRG00001023740) #26	Ubxn8 (ENSCGRG00001024281) #27	Ppp2cb (ENSCGRG00001024500) #28	Tex15 (ENSCGRG00001014732) #29	Purg (ENSCGRG00001015485) #30	Wrn (ENSCGRG00001016491) #31	ENSCGRG00001022694	Nrg1 (ENSCGRG00001024689) #32	ENSCGRG00001014339	Fut10 (ENSCGRG00001014936) #34	Mak16 (ENSCGRG00001016542) #35	Tti2 (ENSCGRG00001014541) #36
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	5	ENSPEMG00000025165	Foxa1 (ENSPEMG00000014429)	Ttc6 (ENSPEMG00000012398)	Sstr1 (ENSPEMG00000027830)	Clec14a (ENSPEMG00000008142)	ENSPEMG00000001174	ENSPEMG00000024797	ENSPEMG00000010494	Gemin2 (ENSPEMG00000008079)	Trappc6b (ENSPEMG00000031181)	Pnn (ENSPEMG00000020349)	Mia2 (ENSPEMG00000009691)	Fbxo33 (ENSPEMG00000007070)	ENSPEMG00000031398	ENSPEMG00000031040	ENSPEMG00000013551 #22	Lrfn5 (ENSPEMG00000022367)	ENSPEMG00000026831	ENSPEMG00000029446	ENSPEMG00000015129	Frmd6 (ENSPEMG00000020767)	Tmx1 (ENSPEMG00000020440)	Trim9 (ENSPEMG00000021633)	Pygl (ENSPEMG00000022037)	Abhd12b (ENSPEMG00000020611)	Nin (ENSPEMG00000020865)	Sav1 (ENSPEMG00000022702)	Atl1 (ENSPEMG00000022136)	Map4k5 (ENSPEMG00000016155)	Cdkl1 (ENSPEMG00000011830)	Dmac2l (ENSPEMG00000020580)
Northern American deer mouse	MODERN SPECIES	8	Dlc1 (ENSPEMG00000018237) #8	ENSPEMG00000025702	Trmt9b (ENSPEMG00000021287) #9	Lonrf1 (ENSPEMG00000024160) #10	Prag1 (ENSPEMG00000022666) #11	Cldn23 (ENSPEMG00000001401) #12	Gm19410 (ENSPEMG00000021928) #13	Mfhas1 (ENSPEMG00000020822) #14	Eri1 (ENSPEMG00000027473) #15	Ppp1r3b (ENSPEMG00000025580) #16	Tnks (ENSPEMG00000015511) #17	Dusp4 (ENSPEMG00000025997) #18	Saraf (ENSPEMG00000000797) #19	Leprotl1 (ENSPEMG00000000535) #20	Mboat4 (ENSPEMG00000020959) #21	ENSPEMG00000021943 #22	Rbpms (ENSPEMG00000021130) #23	Gtf2e2 (ENSPEMG00000010946) #25	Smim18 (ENSPEMG00000028343) #24	Gsr (ENSPEMG00000016504) #26	Ubxn8 (ENSPEMG00000020593) #27	Ppp2cb (ENSPEMG00000023087) #28	Tex15 (ENSPEMG00000026734) #29	ENSPEMG00000013191	Purg (ENSPEMG00000021091) #30	Wrn (ENSPEMG00000020615) #31	Nrg1 (ENSPEMG00000022891) #32	ENSPEMG00000022149	Fut10 (ENSPEMG00000008967) #34	Mak16 (ENSPEMG00000015171) #35	Tti2 (ENSPEMG00000015846) #36
Prairie vole	MODERN SPECIES	356	Sgcz (ENSMOCG00000009551)	Dlc1 (ENSMOCG00000001472) #8	Trmt9b (ENSMOCG00000013997) #9	Lonrf1 (ENSMOCG00000010882) #10	Prag1 (ENSMOCG00000004666) #11	Cldn23 (ENSMOCG00000009754) #12	Gm19410 (ENSMOCG00000017706) #13	Mfhas1 (ENSMOCG00000011084) #14	Eri1 (ENSMOCG00000003319) #15	Ppp1r3b (ENSMOCG00000014062) #16	Tnks (ENSMOCG00000022402) #17	Dusp4 (ENSMOCG00000017211) #18	Saraf (ENSMOCG00000016723) #19	Leprotl1 (ENSMOCG00000002171) #20	Mboat4 (ENSMOCG00000021461) #21	Dctn6 (ENSMOCG00000018050) #22	Rbpms (ENSMOCG00000014009) #23	Smim18 (ENSMOCG00000000211) #24	Gtf2e2 (ENSMOCG00000018396) #25	Gsr (ENSMOCG00000010491) #26	Ubxn8 (ENSMOCG00000003103) #27	ENSMOCG00000022950 #28	Tex15 (ENSMOCG00000020732) #29	Purg (ENSMOCG00000008083) #30	Wrn (ENSMOCG00000013972) #31	Nrg1 (ENSMOCG00000014264) #32	Fut10 (ENSMOCG00000016849) #34	Mak16 (ENSMOCG00000007445) #35	Tti2 (ENSMOCG00000005440) #36	Rnf122 (ENSMOCG00000001095) #37	Dusp26 (ENSMOCG00000021310)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	792											Tnks (ENSNGAG00000000489) #17	Dusp4 (ENSNGAG00000000194) #18	Saraf (ENSNGAG00000006407) #19	Leprotl1 (ENSNGAG00000004995) #20	Mboat4 (ENSNGAG00000004226) #21	ENSNGAG00000002881 #22
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795			Cdc42bpa (ENSNGAG00000016580)	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006)	Psen2 (ENSNGAG00000023668)	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387)	Stum (ENSNGAG00000007799)	Parp1 (ENSNGAG00000003885)	Lin9 (ENSNGAG00000010078)	Mixl1 (ENSNGAG00000018300)	Acbd3 (ENSNGAG00000019285)	ENSNGAG00000008728	Sde2 (ENSNGAG00000022889)	ENSNGAG00000006685 #22	ENSNGAG00000023800	Pycr2 (ENSNGAG00000004193)	ENSNGAG00000007205	Tmem63a (ENSNGAG00000010999)	ENSNGAG00000013471	ENSNGAG00000007235
Lesser Egyptian jerboa	MODERN SPECIES	138	Cldn23 (ENSJJAG00000013088) #12	Gm19410 (ENSJJAG00000001787) #13	Mfhas1 (ENSJJAG00000015209) #14	Eri1 (ENSJJAG00000015740) #15	Ppp1r3b (ENSJJAG00000012925) #16	ENSJJAG00000022750	ENSJJAG00000000167	Tnks (ENSJJAG00000010315) #17	Dusp4 (ENSJJAG00000015845) #18	ENSJJAG00000013189	ENSJJAG00000016531	ENSJJAG00000016758	Saraf (ENSJJAG00000017570) #19	ENSJJAG00000018340 #20	Mboat4 (ENSJJAG00000019709) #21	Dctn6 (ENSJJAG00000009554) #22	ENSJJAG00000010922	ENSJJAG00000011948	Rbpms (ENSJJAG00000014024) #23	Gtf2e2 (ENSJJAG00000016660) #25	Gsr (ENSJJAG00000018464) #26	Ubxn8 (ENSJJAG00000011389) #27	ENSJJAG00000012013 #28	ENSJJAG00000012832	Tex15 (ENSJJAG00000013617) #29	Purg (ENSJJAG00000013136) #30	Wrn (ENSJJAG00000015655) #31	ENSJJAG00000018862 #32
Kangaroo rat	MODERN SPECIES	323	Sgcz (ENSDORG00000016664)	Dlc1 (ENSDORG00000000271) #8	ENSDORG00000013664 #9	ENSDORG00000004157 #10	Prag1 (ENSDORG00000011449) #11	Cldn23 (ENSDORG00000026976) #12	Gm19410 (ENSDORG00000027381) #13	Mfhas1 (ENSDORG00000012091) #14	Eri1 (ENSDORG00000012092) #15	Ppp1r3b (ENSDORG00000013270) #16	Tnks (ENSDORG00000011584) #17	Dusp4 (ENSDORG00000030024) #18	Saraf (ENSDORG00000000028) #19	Leprotl1 (ENSDORG00000000029) #20	Mboat4 (ENSDORG00000024635) #21	Dctn6 (ENSDORG00000000033) #22	Rbpms (ENSDORG00000004501) #23	ENSDORG00000003054 #25	Gsr (ENSDORG00000010007) #26	ENSDORG00000029837	Ubxn8 (ENSDORG00000025536) #27	Ppp2cb (ENSDORG00000007881) #28	ENSDORG00000026659	Tex15 (ENSDORG00000026229) #29	Purg (ENSDORG00000023729) #30	Wrn (ENSDORG00000002696) #31	Nrg1 (ENSDORG00000006594) #32	Fut10 (ENSDORG00000015226) #34	ENSDORG00000015722 #35	Tti2 (ENSDORG00000024219) #36	Rnf122 (ENSDORG00000015725) #37
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000002808	ENSHGLG00000002892 #14	ERI1 (ENSHGLG00000002928) #15	ENSHGLG00000038493	PPP1R3B (ENSHGLG00000032439) #16	ENSHGLG00000041340	ENSHGLG00000003279 #17	ENSHGLG00000045110 #18	ENSHGLG00000040893	ENSHGLG00000043902	ENSHGLG00000003828	ENSHGLG00000004030	SARAF (ENSHGLG00000004133) #19	ENSHGLG00000004898 #20	ENSHGLG00000005636 #21	ENSHGLG00000001627 #22	ENSHGLG00000001817	ENSHGLG00000044234	ENSHGLG00000001883	ENSHGLG00000033530	ENSHGLG00000002303 #23	ENSHGLG00000002529 #25	SMIM18 (ENSHGLG00000002636) #24	ENSHGLG00000039655	ENSHGLG00000039496	GSR (ENSHGLG00000008420) #26	ENSHGLG00000050810	ENSHGLG00000047725	UBXN8 (ENSHGLG00000037756) #27	PPP2CB (ENSHGLG00000004398) #28	TEX15 (ENSHGLG00000040015) #29
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Guinea pig	MODERN SPECIES	130			DLC1 (ENSCPOG00000012692) #8	TRMT9B (ENSCPOG00000032099) #9	ENSCPOG00000001023 #10	PRAG1 (ENSCPOG00000021826) #11	ENSCPOG00000024741 #13	MFHAS1 (ENSCPOG00000006116) #14	ERI1 (ENSCPOG00000030481) #15	PPP1R3B (ENSCPOG00000037520) #16	TNKS (ENSCPOG00000010040) #17	DUSP4 (ENSCPOG00000036262) #18	SARAF (ENSCPOG00000006162) #19	LEPROTL1 (ENSCPOG00000030496) #20	MBOAT4 (ENSCPOG00000010633) #21	DCTN6 (ENSCPOG00000011021) #22	RBPMS (ENSCPOG00000038597) #23	ENSCPOG00000008561 #25
Hystricomorpha_b	ANCESTRAL SPECIES	86	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Long-tailed chinchilla	MODERN SPECIES	170	SGCZ (ENSCLAG00000001655)	DLC1 (ENSCLAG00000002202) #8	TRMT9B (ENSCLAG00000000634) #9	ENSCLAG00000000683 #10	PRAG1 (ENSCLAG00000000774) #11	CLDN23 (ENSCLAG00000017543) #12	ENSCLAG00000001080 #13	MFHAS1 (ENSCLAG00000000979) #14	ERI1 (ENSCLAG00000001116) #15	PPP1R3B (ENSCLAG00000001207) #16	TNKS (ENSCLAG00000001619) #17	DUSP4 (ENSCLAG00000002370) #18	SARAF (ENSCLAG00000002432) #19	LEPROTL1 (ENSCLAG00000002667) #20	MBOAT4 (ENSCLAG00000001107) #21	DCTN6 (ENSCLAG00000001329) #22	RBPMS (ENSCLAG00000001518) #23	GTF2E2 (ENSCLAG00000001696) #25	SMIM18 (ENSCLAG00000000790) #24	GSR (ENSCLAG00000000785) #26	UBXN8 (ENSCLAG00000001056) #27	PPP2CB (ENSCLAG00000001213) #28	TEX15 (ENSCLAG00000000845) #29	PURG (ENSCLAG00000001059) #30	WRN (ENSCLAG00000000817) #31	NRG1 (ENSCLAG00000001108) #32	FUT10 (ENSCLAG00000001573) #34	MAK16 (ENSCLAG00000002726) #35	TTI2 (ENSCLAG00000002873) #36	RNF122 (ENSCLAG00000003028) #37	DUSP26 (ENSCLAG00000003277)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	137	IHH (ENSODEG00000006698)	ENSODEG00000005977	SLC23A3 (ENSODEG00000007227)	CNPPD1 (ENSODEG00000006063)	RETREG2 (ENSODEG00000007657)	ZFAND2B (ENSODEG00000006890)	ABCB6 (ENSODEG00000006250)	ATG9A (ENSODEG00000009070)	ENSODEG00000006254	ENSODEG00000006309	GLB1L (ENSODEG00000006656)	STK16 (ENSODEG00000006054)	TUBA4A (ENSODEG00000007381)	DNAJB2 (ENSODEG00000006729)	PTPRN (ENSODEG00000006545)	ENSODEG00000019355 #22	ENSODEG00000006500	DNPEP (ENSODEG00000007870)	DES (ENSODEG00000005722)	ENSODEG00000005456	ENSODEG00000007610	ASIC4 (ENSODEG00000008072)	CHPF (ENSODEG00000006369)	TMEM198 (ENSODEG00000006314)	OBSL1 (ENSODEG00000007087)	INHA (ENSODEG00000006794)	STK11IP (ENSODEG00000006046)	SLC4A3 (ENSODEG00000008058)	ENSODEG00000019432	EPHA4 (ENSODEG00000007794)	ENSODEG00000007595
Degu	MODERN SPECIES	94	ENSODEG00000004351	TRMT9B (ENSODEG00000004422) #9	ENSODEG00000004736	LONRF1 (ENSODEG00000004254) #10	PRAG1 (ENSODEG00000004326) #11	CLDN23 (ENSODEG00000019489) #12	MFHAS1 (ENSODEG00000004525) #14	ERI1 (ENSODEG00000004586) #15	PPP1R3B (ENSODEG00000019115) #16	ENSODEG00000005017	TNKS (ENSODEG00000004893) #17	DUSP4 (ENSODEG00000005526) #18	SARAF (ENSODEG00000005565) #19	LEPROTL1 (ENSODEG00000005881) #20	MBOAT4 (ENSODEG00000006303) #21	ENSODEG00000006428 #22	ENSODEG00000019309	RBPMS (ENSODEG00000006700) #23	GTF2E2 (ENSODEG00000006742) #25	ENSODEG00000008593	GSR (ENSODEG00000008858) #26	UBXN8 (ENSODEG00000004381) #27	ENSODEG00000004425 #28	ENSODEG00000004553 #29	PURG (ENSODEG00000019280) #30	WRN (ENSODEG00000004076) #31	ENSODEG00000004757	ENSODEG00000005162	ENSODEG00000005245	ENSODEG00000018985	BOC (ENSODEG00000004266)
Degu	MODERN SPECIES	44	ENSODEG00000018343	CELF4 (ENSODEG00000018464)	ENSODEG00000018335	ENSODEG00000018449	ENSODEG00000018350	ENSODEG00000018344	ENSODEG00000018387	FHOD3 (ENSODEG00000018487)	MOCOS (ENSODEG00000018329)	ELP2 (ENSODEG00000018360)	SLC39A6 (ENSODEG00000018391)	RPRD1A (ENSODEG00000018331)	ENSODEG00000018309	GALNT1 (ENSODEG00000018395)	ENSODEG00000020532	ENSODEG00000018436 #22	ENSODEG00000018453	ENSODEG00000018420	ENSODEG00000020539	ZNF24 (ENSODEG00000018328)	ENSODEG00000018345	ENSODEG00000018301	ZNF397 (ENSODEG00000018455)	MAPRE2 (ENSODEG00000018430)	DTNA (ENSODEG00000018476)	ENSODEG00000018326	NOL4 (ENSODEG00000018414)	ASXL3 (ENSODEG00000018431)	ENSODEG00000020529	KLHL14 (ENSODEG00000018307)	ENSODEG00000018292
Sciuridae	ANCESTRAL SPECIES	47															ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	8	CHD9 (ENSSVLG00005025759)	CHD9NB (ENSSVLG00005025793)	ENSSVLG00005025795	TOX3 (ENSSVLG00005025797)	SALL1 (ENSSVLG00005025799)	CYLD (ENSSVLG00005025804)	NOD2 (ENSSVLG00005025812)	SNX20 (ENSSVLG00005025820)	NKD1 (ENSSVLG00005025829)	ENSSVLG00005025838	ADCY7 (ENSSVLG00005025857)	TENT4B (ENSSVLG00005025875)	HEATR3 (ENSSVLG00005025878)	ENSSVLG00005025884	ENSSVLG00005025890	ENSSVLG00005025893 #22	ENSSVLG00005025899	ZNF423 (ENSSVLG00005016875)	ENSSVLG00005016966	CBLN1 (ENSSVLG00005017023)	ENSSVLG00005017072	N4BP1 (ENSSVLG00005017117)	ENSSVLG00005017168	SIAH1 (ENSSVLG00005017212)	LONP2 (ENSSVLG00005017285)	ABCC11 (ENSSVLG00005017407)	ABCC12 (ENSSVLG00005018066)	ENSSVLG00005018386	ITFG1 (ENSSVLG00005018515)	NETO2 (ENSSVLG00005018574)	ENSSVLG00005018635
Eurasian red squirrel	MODERN SPECIES	14	TMEM121B (ENSSVLG00005021991)	HDHD5 (ENSSVLG00005021890)	ADA2 (ENSSVLG00005021814)	ENSSVLG00005021751	CECR2 (ENSSVLG00005021410)	SLC25A18 (ENSSVLG00005021313)	ENSSVLG00005021046	ENSSVLG00005021002	BCL2L13 (ENSSVLG00005020832)	BID (ENSSVLG00005020750)	ENSSVLG00005020690	PEX26 (ENSSVLG00005020583)	USP18 (ENSSVLG00005020464)	ENSSVLG00005020327	MBOAT4 (ENSSVLG00005020277) #21	ENSSVLG00005020253 #22	ENSSVLG00005020206	RBPMS (ENSSVLG00005020116) #23	SMIM18 (ENSSVLG00005020071) #24	ENSSVLG00005019974 #25	ENSSVLG00005019906	GSR (ENSSVLG00005019759) #26	UBXN8 (ENSSVLG00005019558) #27	PPP2CB (ENSSVLG00005019386) #28	ENSSVLG00005018607	PURG (ENSSVLG00005018535) #30	WRN (ENSSVLG00005018499) #31	NRG1 (ENSSVLG00005017132) #32	ENSSVLG00005016877	ENSSVLG00005016864	FUT10 (ENSSVLG00005016821) #34
Marmotini	ANCESTRAL SPECIES	82															ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	235															ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890.w #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000164545	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31
Arctic ground squirrel	MODERN SPECIES	606															MBOAT4 (ENSUPAG00010016741) #21	ENSUPAG00010016743 #22	RBPMS (ENSUPAG00010016759) #23	GTF2E2 (ENSUPAG00010016807) #25	SMIM18 (ENSUPAG00010016863) #24	ENSUPAG00010016868	GSR (ENSUPAG00010016883) #26	UBXN8 (ENSUPAG00010016902) #27	PPP2CB (ENSUPAG00010016924) #28	TEX15 (ENSUPAG00010016935) #29	PURG (ENSUPAG00010016946) #30
Squirrel	MODERN SPECIES	392															MBOAT4 (ENSSTOG00000011525) #21	DCTN6 (ENSSTOG00000011527) #22	RBPMS (ENSSTOG00000026546) #23	GTF2E2 (ENSSTOG00000003714) #25	ENSSTOG00000022629	ENSSTOG00000034954	GSR (ENSSTOG00000001583) #26	UBXN8 (ENSSTOG00000024934) #27	ENSSTOG00000032331 #28	TEX15 (ENSSTOG00000006145) #29	ENSSTOG00000022216	PURG (ENSSTOG00000024490) #30	WRN (ENSSTOG00000013599) #31	ENSSTOG00000022932
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000017890.x #22
Arctic ground squirrel	MODERN SPECIES	110	ENSUPAG00010004072	RNF2 (ENSUPAG00010004080)	NIBAN1 (ENSUPAG00010004096)	EDEM3 (ENSUPAG00010004991)	C1orf21 (ENSUPAG00010005116)	ENSUPAG00010005122	COLGALT2 (ENSUPAG00010005128)	RGL1 (ENSUPAG00010005151)	ARPC5 (ENSUPAG00010005182)	NCF2 (ENSUPAG00010005185)	SMG7 (ENSUPAG00010005207)	NMNAT2 (ENSUPAG00010005271)	ENSUPAG00010005282	LAMC2 (ENSUPAG00010005286)	LAMC1 (ENSUPAG00010005318)	ENSUPAG00010005331 #22	SHCBP1L (ENSUPAG00010005337)	DHX9 (ENSUPAG00010005390)	NPL (ENSUPAG00010005414)	RGS8 (ENSUPAG00010005428)	RGS16 (ENSUPAG00010005535)	RNASEL (ENSUPAG00010005544)	RGSL1 (ENSUPAG00010005674)	ENSUPAG00010005685	ENSUPAG00010005694	ENSUPAG00010005701	ENSUPAG00010005716	ZNF648 (ENSUPAG00010005726)	CACNA1E (ENSUPAG00010005734)	IER5 (ENSUPAG00010005938)	MR1 (ENSUPAG00010005940)
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	72															MBOAT4 (ENSMMMG00000014010) #21	DCTN6 (ENSMMMG00000014013) #22	ENSMMMG00000014026 #23	GTF2E2 (ENSMMMG00000014033) #25	SMIM18 (ENSMMMG00000014049) #24	ENSMMMG00000014056	GSR (ENSMMMG00000014061) #26	UBXN8 (ENSMMMG00000014183) #27	PPP2CB (ENSMMMG00000014195) #28	TEX15 (ENSMMMG00000014201) #29	PURG (ENSMMMG00000014207) #30	WRN (ENSMMMG00000014218) #31	NRG1 (ENSMMMG00000014488) #32	FUT10 (ENSMMMG00000014749) #34	ENSMMMG00000014764	ENSMMMG00000014767	ENSMMMG00000014771 #35
Alpin marmot	MODERN SPECIES	83								MPDZ (ENSMMMG00000007606)	ENSMMMG00000007595	ENSMMMG00000007584	NFIB (ENSMMMG00000007378)	ZDHHC21 (ENSMMMG00000007346)	CER1 (ENSMMMG00000007339)	FREM1 (ENSMMMG00000007262)	TTC39B (ENSMMMG00000007232)	ENSMMMG00000007221 #22	SNAPC3 (ENSMMMG00000007194)	PSIP1 (ENSMMMG00000007110)	CCDC171 (ENSMMMG00000007048)	BNC2 (ENSMMMG00000006931)	CNTLN (ENSMMMG00000006867)	SH3GL2 (ENSMMMG00000006807)	ENSMMMG00000006805	ADAMTSL1 (ENSMMMG00000006719)	ENSMMMG00000006707	SAXO1 (ENSMMMG00000006694)	RRAGA (ENSMMMG00000006689)	ENSMMMG00000006686	HAUS6 (ENSMMMG00000006628)	PLIN2 (ENSMMMG00000006611)	DENND4C (ENSMMMG00000006441)
Lagomorpha	ANCESTRAL SPECIES	149													ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Rabbit	MODERN SPECIES	11	ENSOCUG00000034997	DAAM1 (ENSOCUG00000003608)	ENSOCUG00000007349	ENSOCUG00000012821	ENSOCUG00000030247	ENSOCUG00000035204	ENSOCUG00000038466	ENSOCUG00000035229	ENSOCUG00000011121	ENSOCUG00000037183	ENSOCUG00000034822	ENSOCUG00000031691	SARAF (ENSOCUG00000020996) #19	LEPROTL1 (ENSOCUG00000013931) #20	MBOAT4 (ENSOCUG00000014856) #21	DCTN6 (ENSOCUG00000010968) #22	RBPMS (ENSOCUG00000008572) #23	GTF2E2 (ENSOCUG00000016020) #25	SMIM18 (ENSOCUG00000039471) #24	GSR (ENSOCUG00000017234) #26	ENSOCUG00000005223 #27	ENSOCUG00000005230 #28	ENSOCUG00000014028	TEX15 (ENSOCUG00000017093) #29	PURG (ENSOCUG00000022003) #30	WRN (ENSOCUG00000012620) #31	ENSOCUG00000030626	NRG1 (ENSOCUG00000005836) #32	FUT10 (ENSOCUG00000000857) #34	MAK16 (ENSOCUG00000008735) #35	TTI2 (ENSOCUG00000008740) #36
Pika	DUPLICATION
Pika	MODERN SPECIES	4956																ENSOPRG00000002703 #22
Pika	DUPLICATION
Pika	MODERN SPECIES	5457																ENSOPRG00000004704 #22
Pika	MODERN SPECIES	8846																ENSOPRG00000005061 #22
Primates	ANCESTRAL SPECIES	25	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Strepsirrhini	ANCESTRAL SPECIES	25	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Bushbaby	MODERN SPECIES	236	SGCZ (ENSOGAG00000012538)	C8orf48 (ENSOGAG00000014835) #7	DLC1 (ENSOGAG00000012710) #8	TRMT9B (ENSOGAG00000012709) #9	LONRF1 (ENSOGAG00000028558) #10	PRAG1 (ENSOGAG00000029936) #11	CLDN23 (ENSOGAG00000033228) #12	MFHAS1 (ENSOGAG00000033484) #14	ERI1 (ENSOGAG00000029057) #15	PPP1R3B (ENSOGAG00000002682) #16	TNKS (ENSOGAG00000007325) #17	DUSP4 (ENSOGAG00000028754) #18	SARAF (ENSOGAG00000003599) #19	LEPROTL1 (ENSOGAG00000003601) #20	MBOAT4 (ENSOGAG00000033748) #21	DCTN6 (ENSOGAG00000003603) #22	RBPMS (ENSOGAG00000030298) #23	GTF2E2 (ENSOGAG00000006287) #25	ENSOGAG00000016072 #26
Lemuriformes	DUPLICATION
Lemuriformes	DUPLICATION
Lemuriformes	ANCESTRAL SPECIES	32	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890.fb.a #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Lemuriformes_a	ANCESTRAL SPECIES	150			ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890.fb.a #22	ENSGT00390000017890.gb #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Greater bamboo lemur	MODERN SPECIES	551					LONRF1 (ENSPSMG00000005658) #10	PRAG1 (ENSPSMG00000005647) #11	CLDN23 (ENSPSMG00000005643) #12	MFHAS1 (ENSPSMG00000005640) #14	ERI1 (ENSPSMG00000005623) #15	PPP1R3B (ENSPSMG00000005615) #16	TNKS (ENSPSMG00000005552) #17	DUSP4 (ENSPSMG00000005503) #18	SARAF (ENSPSMG00000005497) #19	LEPROTL1 (ENSPSMG00000005485) #20	MBOAT4 (ENSPSMG00000005477) #21	ENSPSMG00000005446 #22
Mouse lemur	MODERN SPECIES	12	SGCZ (ENSMICG00000001439)	TUSC3 (ENSMICG00000000560)	ENSMICG00000035609	ENSMICG00000043449 ##8	DLC1 (ENSMICG00000012925) #8	TRMT9B (ENSMICG00000012942) #9	LONRF1 (ENSMICG00000012945) #10	PRAG1 (ENSMICG00000012957) #11	MFHAS1 (ENSMICG00000012971) #14	ENSMICG00000012988 #15	TNKS (ENSMICG00000012998) #17	DUSP4 (ENSMICG00000006088) #18	ENSMICG00000030380 #19	LEPROTL1 (ENSMICG00000036863) #20	MBOAT4 (ENSMICG00000044757) #21	DCTN6 (ENSMICG00000006096) #22	RBPMS (ENSMICG00000001295) #23	ENSMICG00000001841 #25	SMIM18 (ENSMICG00000042305) #24	GSR (ENSMICG00000010399) #26	UBXN8 (ENSMICG00000027523) #27	PPP2CB (ENSMICG00000016849) #28	TEX15 (ENSMICG00000037056) #29	PURG (ENSMICG00000034775) #30	WRN (ENSMICG00000010630) #31	NRG1 (ENSMICG00000015565) #32	FUT10 (ENSMICG00000013099) #34	MAK16 (ENSMICG00000013106) #35	TTI2 (ENSMICG00000013113) #36	RNF122 (ENSMICG00000013127) #37	DUSP26 (ENSMICG00000026693)
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00390000017890.fb.b #22
Lemuriformes_a	ANCESTRAL SPECIES	61												ENSGT00940000156295	ENSGT00940000160324	ENSGT00940000155249	ENSGT00940000154953	ENSGT00390000017890.fb.b #22	ENSGT00440000037338	ENSGT00390000002565	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828	ENSGT00950000182915.a.a.b	ENSGT00940000161998	ENSGT00940000156589	ENSGT00940000160382	ENSGT00910000148499	ENSGT00940000157878	ENSGT00940000156171
Greater bamboo lemur	MODERN SPECIES	1295												PCDH18 (ENSPSMG00000001093)	SLC7A11 (ENSPSMG00000001000)	ENSPSMG00000000927	NOCT (ENSPSMG00000000919)	ENSPSMG00000000915 #22	ELF2 (ENSPSMG00000000797)	MGARP (ENSPSMG00000000683)	NDUFC1 (ENSPSMG00000023905)	NAA15 (ENSPSMG00000023890)	RAB33B (ENSPSMG00000023852)	SETD7 (ENSPSMG00000023843)	MGST2 (ENSPSMG00000023823)	ENSPSMG00000023818	ENSPSMG00000023815
Coquerels sifaka	MODERN SPECIES	92												PCDH18 (ENSPCOG00000027193)	SLC7A11 (ENSPCOG00000026918)	NOCT (ENSPCOG00000013805)	ELF2 (ENSPCOG00000016141)	ENSPCOG00000017597 #22	MGARP (ENSPCOG00000020598)	NDUFC1 (ENSPCOG00000002891)	NAA15 (ENSPCOG00000026962)	RAB33B (ENSPCOG00000014314)	SETD7 (ENSPCOG00000018357)	MGST2 (ENSPCOG00000026886)	MAML3 (ENSPCOG00000020317)	ENSPCOG00000009673	CLGN (ENSPCOG00000013430)	MGAT4D (ENSPCOG00000017123)	ELMOD2 (ENSPCOG00000019207)	UCP1 (ENSPCOG00000020219)	TBC1D9 (ENSPCOG00000022369)	ENSPCOG00000018162	ENSPCOG00000024152
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00390000017890.gb #22
Lemuriformes_a	ANCESTRAL SPECIES	150		ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890.fb.a #22	ENSGT00390000017890.gb #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Coquerels sifaka	MODERN SPECIES	434						DLC1 (ENSPCOG00000016110) #8	TRMT9B (ENSPCOG00000020130) #9	LONRF1 (ENSPCOG00000003735) #10	PRAG1 (ENSPCOG00000014329) #11	MFHAS1 (ENSPCOG00000018440) #14	ERI1 (ENSPCOG00000019090) #15	DUSP4 (ENSPCOG00000014789) #18	ENSPCOG00000022522 #19	LEPROTL1 (ENSPCOG00000013061) #20	MBOAT4 (ENSPCOG00000024554) #21	ENSPCOG00000025003 #22	RBPMS (ENSPCOG00000015948) #23
Haplorrhini	ANCESTRAL SPECIES	27	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	4137												ENSTSYG00000028226	SARAF (ENSTSYG00000003935) #19	LEPROTL1 (ENSTSYG00000026663) #20	MBOAT4 (ENSTSYG00000006418) #21	DCTN6 (ENSTSYG00000013306) #22
Tarsier	MODERN SPECIES	6577																ENSTSYG00000030715 #22	ROCK1 (ENSTSYG00000008129)	ENSTSYG00000010528	THOC1 (ENSTSYG00000010585)
Simiiformes	ANCESTRAL SPECIES	25	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00940000163468
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000013228.e.a.f	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT01030000237808
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000013228.e.a.f	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT01030000237808	ENSGT00940000160287 #34	ENSGT00390000012859 #35
Rhinopithecus	ANCESTRAL SPECIES	55	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000154314.l	ENSGT00910000148103	ENSGT00910000147276	ENSGT00940000157326 #32	ENSGT00940000160287 #34
Golden snub-nosed monkey	MODERN SPECIES	1551	ELP3 (ENSRROG00000035502)	PNOC (ENSRROG00000034843)	ZNF395 (ENSRROG00000039052)	FBXO16 (ENSRROG00000031695)	FZD3 (ENSRROG00000042665)	EXTL3 (ENSRROG00000037901)	INTS9 (ENSRROG00000040531)	HMBOX1 (ENSRROG00000031895)	KIF13B (ENSRROG00000043696)	DUSP4 (ENSRROG00000022122) #18	ENSRROG00000023257	ENSRROG00000037428	SARAF (ENSRROG00000027882) #19	LEPROTL1 (ENSRROG00000029326) #20	MBOAT4 (ENSRROG00000034165) #21	DCTN6 (ENSRROG00000038808) #22	ENSRROG00000041818	RBPMS (ENSRROG00000042518) #23	SMIM18 (ENSRROG00000017435) #24	GTF2E2 (ENSRROG00000042583) #25	ENSRROG00000030996	GSR (ENSRROG00000038338) #26	UBXN8 (ENSRROG00000037021) #27	PPP2CB (ENSRROG00000031584) #28	TEX15 (ENSRROG00000031020) #29	PURG (ENSRROG00000040270) #30	WRN (ENSRROG00000045381) #31	ENSRROG00000000062	ENSRROG00000037574	ENSRROG00000019737	NRG1 (ENSRROG00000038218) #32
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	159											DUSP4 (ENSRBIG00000040063) #18	ENSRBIG00000035464	SARAF (ENSRBIG00000034416) #19	LEPROTL1 (ENSRBIG00000043780) #20	MBOAT4 (ENSRBIG00000042055) #21	DCTN6 (ENSRBIG00000019701) #22	ENSRBIG00000032267	RBPMS (ENSRBIG00000038218) #23	GTF2E2 (ENSRBIG00000043183) #25	GSR (ENSRBIG00000043055) #26	ENSRBIG00000026447	ENSRBIG00000042273	UBXN8 (ENSRBIG00000031406) #27	PPP2CB (ENSRBIG00000032443) #28	TEX15 (ENSRBIG00000004255) #29	PURG (ENSRBIG00000028388) #30	WRN (ENSRBIG00000031825) #31	ENSRBIG00000040116	NRG1 (ENSRBIG00000039150) #32	FUT10 (ENSRBIG00000028023) #34	MAK16 (ENSRBIG00000039940) #35
Black snub-nosed monkey	MODERN SPECIES	1795											ENSRBIG00000043544	GNA13 (ENSRBIG00000028740)	ENSRBIG00000009577	RGS9 (ENSRBIG00000032297)	AXIN2 (ENSRBIG00000038370)	ENSRBIG00000043249 #22	ENSRBIG00000025654	ENSRBIG00000028302	CEP112 (ENSRBIG00000027435)	ENSRBIG00000033569	APOH (ENSRBIG00000034681)	PRKCA (ENSRBIG00000034135)	CACNG5 (ENSRBIG00000031304)	CACNG4 (ENSRBIG00000042689)	CACNG1 (ENSRBIG00000013073)	HELZ (ENSRBIG00000026299)	PSMD12 (ENSRBIG00000033652)	ENSRBIG00000030472	PITPNC1 (ENSRBIG00000030307)	NOL11 (ENSRBIG00000040261)	ENSRBIG00000036690
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000013228.e.a.f	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT01030000237808	ENSGT00940000160287 #34	ENSGT00390000012859 #35
Vervet Monkey	MODERN SPECIES	27	ENSCSAG00000015949	ELP3 (ENSCSAG00000015927)	PNOC (ENSCSAG00000015924)	ZNF395 (ENSCSAG00000015919)	FBXO16 (ENSCSAG00000015916)	FZD3 (ENSCSAG00000015910)	EXTL3 (ENSCSAG00000015903)	INTS9 (ENSCSAG00000015899)	HMBOX1 (ENSCSAG00000015894)	ENSCSAG00000018526	KIF13B (ENSCSAG00000015877)	DUSP4 (ENSCSAG00000015851) #18	SARAF (ENSCSAG00000015848) #19	LEPROTL1 (ENSCSAG00000015845) #20	MBOAT4 (ENSCSAG00000015840) #21	DCTN6 (ENSCSAG00000015839) #22	RBPMS (ENSCSAG00000015838) #23	SMIM18 (ENSCSAG00000018528) #24	GSR (ENSCSAG00000015834) #26	UBXN8 (ENSCSAG00000015827) #27	PPP2CB (ENSCSAG00000015823) #28	TEX15 (ENSCSAG00000015819) #29	PURG (ENSCSAG00000015815) #30	WRN (ENSCSAG00000015810) #31	ENSCSAG00000018530	NRG1 (ENSCSAG00000015800) #32	FUT10 (ENSCSAG00000015793) #34	TTI2 (ENSCSAG00000015786) #36	RNF122 (ENSCSAG00000015784) #37	DUSP26 (ENSCSAG00000015780)	UNC5D (ENSCSAG00000015773)
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986 #26	ENSGT00390000013228.e.a.f	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT01030000237808	ENSGT00940000160287 #34
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986 #26	ENSGT00390000013228.e.a.f	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT01030000237808	ENSGT00940000160287 #34
Olive baboon	MODERN SPECIES	18	ELP3 (ENSPANG00000019350)	PNOC (ENSPANG00000022004)	ZNF395 (ENSPANG00000017244)	FBXO16 (ENSPANG00000019570)	FZD3 (ENSPANG00000010199)	EXTL3 (ENSPANG00000016340)	INTS9 (ENSPANG00000016305)	HMBOX1 (ENSPANG00000014537)	KIF13B (ENSPANG00000020594)	DUSP4 (ENSPANG00000016692) #18	ENSPANG00000037472	ENSPANG00000044385	SARAF (ENSPANG00000005235) #19	LEPROTL1 (ENSPANG00000018510) #20	MBOAT4 (ENSPANG00000020593) #21	DCTN6 (ENSPANG00000008817) #22	ENSPANG00000030561	RBPMS (ENSPANG00000008143) #23	GTF2E2 (ENSPANG00000016906) #25	SMIM18 (ENSPANG00000008816) #24	ENSPANG00000042053	GSR (ENSPANG00000026091) #26	ENSPANG00000033173	UBXN8 (ENSPANG00000011717) #27	PPP2CB (ENSPANG00000021949) #28	TEX15 (ENSPANG00000026090) #29	ENSPANG00000046593	PURG (ENSPANG00000010197) #30	WRN (ENSPANG00000018594) #31	ENSPANG00000044411	ENSPANG00000041082
Cercopithecinae_d	ANCESTRAL SPECIES	50	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986 #26	ENSGT00390000013228.e.a.f	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35
Drill	MODERN SPECIES	676									ENSMLEG00000033649	KIF13B (ENSMLEG00000012924)	DUSP4 (ENSMLEG00000044011) #18	ENSMLEG00000036541	SARAF (ENSMLEG00000034776) #19	LEPROTL1 (ENSMLEG00000039909) #20	MBOAT4 (ENSMLEG00000028769) #21	DCTN6 (ENSMLEG00000042120) #22	ENSMLEG00000037285	RBPMS (ENSMLEG00000015635) #23	SMIM18 (ENSMLEG00000027072) #24	GTF2E2 (ENSMLEG00000032808) #25	ENSMLEG00000038586	ENSMLEG00000028120	GSR (ENSMLEG00000007410) #26	UBXN8 (ENSMLEG00000037958) #27	PPP2CB (ENSMLEG00000034990) #28	TEX15 (ENSMLEG00000036738) #29	PURG (ENSMLEG00000015367) #30	WRN (ENSMLEG00000038296) #31	ENSMLEG00000040119	ENSMLEG00000027280	NRG1 (ENSMLEG00000034456) #32
Sooty mangabey	MODERN SPECIES	555	ELP3 (ENSCATG00000034665)	ENSCATG00000035437	PNOC (ENSCATG00000034393)	ZNF395 (ENSCATG00000032647)	FBXO16 (ENSCATG00000040856)	FZD3 (ENSCATG00000044589)	EXTL3 (ENSCATG00000029453)	INTS9 (ENSCATG00000042463)	HMBOX1 (ENSCATG00000037589)	KIF13B (ENSCATG00000008274)	DUSP4 (ENSCATG00000031537) #18	ENSCATG00000041532	SARAF (ENSCATG00000044043) #19	LEPROTL1 (ENSCATG00000037168) #20	MBOAT4 (ENSCATG00000029389) #21	DCTN6 (ENSCATG00000038873) #22	ENSCATG00000038571	RBPMS (ENSCATG00000036486) #23	SMIM18 (ENSCATG00000020547) #24	GTF2E2 (ENSCATG00000040282) #25	ENSCATG00000034142	ENSCATG00000030271	GSR (ENSCATG00000029887) #26	UBXN8 (ENSCATG00000043806) #27	PPP2CB (ENSCATG00000010170) #28	TEX15 (ENSCATG00000012961) #29	PURG (ENSCATG00000041294) #30	WRN (ENSCATG00000040557) #31	ENSCATG00000031264	NRG1 (ENSCATG00000038009) #32	FUT10 (ENSCATG00000042006) #34
Macaca	ANCESTRAL SPECIES	14	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT00910000148103	ENSGT00910000147276	ENSGT00940000157326 #32
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000002517.a.b.b.c.a	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Crab-eating macaque	MODERN SPECIES	18	ELP3 (ENSMFAG00000000785)	PNOC (ENSMFAG00000044801)	ZNF395 (ENSMFAG00000036920)	ENSMFAG00000049652	FBXO16 (ENSMFAG00000043613)	FZD3 (ENSMFAG00000044555)	EXTL3 (ENSMFAG00000045572)	INTS9 (ENSMFAG00000043511)	ENSMFAG00000060486	HMBOX1 (ENSMFAG00000035548)	KIF13B (ENSMFAG00000038520)	DUSP4 (ENSMFAG00000003869) #18	SARAF (ENSMFAG00000046215) #19	ENSMFAG00000032781 #20	MBOAT4 (ENSMFAG00000039870) #21	DCTN6 (ENSMFAG00000041261) #22	ENSMFAG00000060969	ENSMFAG00000001475	ENSMFAG00000036911 #23	GTF2E2 (ENSMFAG00000031671) #25	GSR (ENSMFAG00000003439) #26	ENSMFAG00000064041	UBXN8 (ENSMFAG00000038759) #27	PPP2CB (ENSMFAG00000038369) #28	TEX15 (ENSMFAG00000032809) #29	PURG (ENSMFAG00000033747) #30	WRN (ENSMFAG00000043428) #31	ENSMFAG00000064762	NRG1 (ENSMFAG00000002201) #32	ENSMFAG00000063600	FUT10 (ENSMFAG00000000813) #34
Rhesus	MODERN SPECIES	18	NUGGC (ENSMMUG00000001040)	ELP3 (ENSMMUG00000005067)	ENSMMUG00000064490	PNOC (ENSMMUG00000007479)	ZNF395 (ENSMMUG00000060762)	FBXO16 (ENSMMUG00000007480)	FZD3 (ENSMMUG00000007486)	EXTL3 (ENSMMUG00000017700)	INTS9 (ENSMMUG00000019723)	HMBOX1 (ENSMMUG00000014981)	KIF13B (ENSMMUG00000039515)	DUSP4 (ENSMMUG00000049727) #18	SARAF (ENSMMUG00000014143) #19	LEPROTL1 (ENSMMUG00000014144) #20	MBOAT4 (ENSMMUG00000052895) #21	DCTN6 (ENSMMUG00000013735) #22	ENSMMUG00000018428	RBPMS (ENSMMUG00000000458) #23	ENSMMUG00000064702	GTF2E2 (ENSMMUG00000000459) #25	ENSMMUG00000018860	GSR (ENSMMUG00000039030) #26	UBXN8 (ENSMMUG00000029011) #27	PPP2CB (ENSMMUG00000020819) #28	TEX15 (ENSMMUG00000020821) #29	PURG (ENSMMUG00000022654) #30	WRN (ENSMMUG00000022655) #31	ENSMMUG00000063894	ENSMMUG00000059106	ENSMMUG00000049377	NRG1 (ENSMMUG00000000208) #32
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	579	ELP3 (ENSMNEG00000024316)	ENSMNEG00000021099	PNOC (ENSMNEG00000032474)	ZNF395 (ENSMNEG00000011767)	FBXO16 (ENSMNEG00000045209)	FZD3 (ENSMNEG00000040320)	EXTL3 (ENSMNEG00000038935)	INTS9 (ENSMNEG00000035204)	HMBOX1 (ENSMNEG00000036228)	KIF13B (ENSMNEG00000002442)	DUSP4 (ENSMNEG00000039817) #18	ENSMNEG00000037297	SARAF (ENSMNEG00000010730) #19	LEPROTL1 (ENSMNEG00000045245) #20	MBOAT4 (ENSMNEG00000029602) #21	DCTN6 (ENSMNEG00000042347) #22	ENSMNEG00000043824	RBPMS (ENSMNEG00000043805) #23	SMIM18 (ENSMNEG00000026668) #24	GTF2E2 (ENSMNEG00000038427) #25	ENSMNEG00000043578	GSR (ENSMNEG00000034327) #26	UBXN8 (ENSMNEG00000038058) #27	PPP2CB (ENSMNEG00000042889) #28	TEX15 (ENSMNEG00000045074) #29	PURG (ENSMNEG00000037043) #30	WRN (ENSMNEG00000032617) #31	ENSMNEG00000045496
Pig-tailed macaque	MODERN SPECIES	432	POLG2 (ENSMNEG00000041525)	DDX5 (ENSMNEG00000039559)	CEP95 (ENSMNEG00000031411)	SMURF2 (ENSMNEG00000034193)	ENSMNEG00000027520	ENSMNEG00000035347	ENSMNEG00000040230	ENSMNEG00000041731	ENSMNEG00000028688	GNA13 (ENSMNEG00000040026)	ENSMNEG00000030134	RGS9 (ENSMNEG00000029308)	AXIN2 (ENSMNEG00000000060)	CEP112 (ENSMNEG00000030004)	ENSMNEG00000042862	ENSMNEG00000033718 #22	ENSMNEG00000044873	ENSMNEG00000028378	APOH (ENSMNEG00000033403)	PRKCA (ENSMNEG00000037809)	ENSMNEG00000035333	CACNG5 (ENSMNEG00000028527)	CACNG4 (ENSMNEG00000040535)	CACNG1 (ENSMNEG00000030124)	HELZ (ENSMNEG00000037121)	PSMD12 (ENSMNEG00000032475)	PITPNC1 (ENSMNEG00000041773)	NOL11 (ENSMNEG00000029864)	BPTF (ENSMNEG00000033041)	KPNA2 (ENSMNEG00000041275)	ENSMNEG00000010189
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000013228.e.a.f	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT01030000237808	ENSGT00940000160287 #34	ENSGT00390000012859 #35
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	23	ELP3 (ENSNLEG00000016577)	ENSNLEG00000016608	ZNF395 (ENSNLEG00000016613)	ENSNLEG00000016633	FZD3 (ENSNLEG00000016642)	EXTL3 (ENSNLEG00000016652)	ENSNLEG00000035669	INTS9 (ENSNLEG00000016658)	HMBOX1 (ENSNLEG00000016701)	KIF13B (ENSNLEG00000016716)	DUSP4 (ENSNLEG00000016740) #18	SARAF (ENSNLEG00000011880) #19	ENSNLEG00000011892 #20	ENSNLEG00000019089	MBOAT4 (ENSNLEG00000011902) #21	DCTN6 (ENSNLEG00000011906) #22	ENSNLEG00000027228	ENSNLEG00000011910	ENSNLEG00000036183 #23	GTF2E2 (ENSNLEG00000011921) #25	SMIM18 (ENSNLEG00000019119) #24	GSR (ENSNLEG00000011936) #26	ENSNLEG00000031538	UBXN8 (ENSNLEG00000028201) #27	PPP2CB (ENSNLEG00000011977) #28	TEX15 (ENSNLEG00000012001) #29	PURG (ENSNLEG00000012004) #30	WRN (ENSNLEG00000012006) #31	NRG1 (ENSNLEG00000012030) #32	FUT10 (ENSNLEG00000012071) #34	ENSNLEG00000028314
Gibbon	MODERN SPECIES	9	PECAM1 (ENSNLEG00000014972)	MILR1 (ENSNLEG00000014968)	POLG2 (ENSNLEG00000014951)	ENSNLEG00000035786	DDX5 (ENSNLEG00000014929)	CEP95 (ENSNLEG00000014905)	SMURF2 (ENSNLEG00000014881)	ENSNLEG00000035637	ENSNLEG00000030835	ENSNLEG00000028703	GNA13 (ENSNLEG00000014875)	RGS9 (ENSNLEG00000014838)	ENSNLEG00000014833	ENSNLEG00000032661	ENSNLEG00000035505	ENSNLEG00000013489 #22	ENSNLEG00000031595	CEP112 (ENSNLEG00000014821)	ENSNLEG00000028499	ADORA2B (ENSNLEG00000014815)	ZSWIM7 (ENSNLEG00000031243)	TTC19 (ENSNLEG00000014808)	NCOR1 (ENSNLEG00000014734)	ENSNLEG00000030239	PIGL (ENSNLEG00000028292)	TRPV2 (ENSNLEG00000014706)	LRRC75A (ENSNLEG00000033445)	ZNF287 (ENSNLEG00000028358)	ENSNLEG00000030787	ZNF624 (ENSNLEG00000014692)	PMP22 (ENSNLEG00000014669)
Hominidae	ANCESTRAL SPECIES	15	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT01030000237808	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Orangutan	MODERN SPECIES	21	ELP3 (ENSPPYG00000018473)	PNOC (ENSPPYG00000018475)	ZNF395 (ENSPPYG00000018476)	FBXO16 (ENSPPYG00000029855)	FZD3 (ENSPPYG00000018477)	EXTL3 (ENSPPYG00000018478)	INTS9 (ENSPPYG00000018479)	HMBOX1 (ENSPPYG00000018480)	KIF13B (ENSPPYG00000018481)	DUSP4 (ENSPPYG00000018482) #18	ENSPPYG00000038802	SARAF (ENSPPYG00000018483) #19	LEPROTL1 (ENSPPYG00000018484) #20	ENSPPYG00000032388	MBOAT4 (ENSPPYG00000018485) #21	DCTN6 (ENSPPYG00000018486) #22	ENSPPYG00000036415	ENSPPYG00000035281	ENSPPYG00000018487 #23	GTF2E2 (ENSPPYG00000018488) #25	ENSPPYG00000041487	GSR (ENSPPYG00000018489) #26	UBXN8 (ENSPPYG00000018490) #27	PPP2CB (ENSPPYG00000018491) #28	TEX15 (ENSPPYG00000018492) #29	PURG (ENSPPYG00000018493) #30	WRN (ENSPPYG00000018494) #31	NRG1 (ENSPPYG00000018497) #32	ENSPPYG00000030976	ENSPPYG00000018498	FUT10 (ENSPPYG00000018500) #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00910000147585	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT00950000183198.c.a.a.a.a.l.a.a	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT01010000222693
Gorilla	MODERN SPECIES	21	ENSGGOG00000010542	CNGB3 (ENSGGOG00000010075)	ENSGGOG00000014784	CPNE3 (ENSGGOG00000009601)	ENSGGOG00000043147	RMDN1 (ENSGGOG00000015004)	WWP1 (ENSGGOG00000014988)	SLC7A13 (ENSGGOG00000008511)	ATP6V0D2 (ENSGGOG00000013754)	PSKH2 (ENSGGOG00000000087)	ENSGGOG00000022765	SARAF (ENSGGOG00000022354) #19	ENSGGOG00000025722	ENSGGOG00000012811 #20	MBOAT4 (ENSGGOG00000003396) #21	DCTN6 (ENSGGOG00000013074) #22	ENSGGOG00000044205	ENSGGOG00000036324	ENSGGOG00000004813 #23	ENSGGOG00000040201	GTF2E2 (ENSGGOG00000022495) #25	GSR (ENSGGOG00000002336) #26	ENSGGOG00000016076 #27	PPP2CB (ENSGGOG00000013978) #28	TEX15 (ENSGGOG00000027549) #29	PURG (ENSGGOG00000023416) #30	ENSGGOG00000043791	WRN (ENSGGOG00000022154) #31	NRG1 (ENSGGOG00000024870) #32	ENSGGOG00000043023	FUT10 (ENSGGOG00000028574) #34
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00910000147585	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT00950000183198.c.a.a.a.a.l.a.a	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01060000253534	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT01010000222693
Human	MODERN SPECIES	20	SCARA5 (ENSG00000168079)	NUGGC (ENSG00000189233)	ELP3 (ENSG00000134014)	PNOC (ENSG00000168081)	ZNF395 (ENSG00000186918)	FBXO16 (ENSG00000214050)	FZD3 (ENSG00000104290)	EXTL3 (ENSG00000012232)	INTS9 (ENSG00000104299)	HMBOX1 (ENSG00000147421)	KIF13B (ENSG00000197892)	DUSP4 (ENSG00000120875) #18	SARAF (ENSG00000133872) #19	LEPROTL1 (ENSG00000104660) #20	MBOAT4 (ENSG00000177669) #21	DCTN6 (ENSG00000104671) #22	RBPMS (ENSG00000157110) #23	GTF2E2 (ENSG00000197265) #25	SMIM18 (ENSG00000253457) #24	GSR (ENSG00000104687) #26	UBXN8 (ENSG00000104691) #27	PPP2CB (ENSG00000104695) #28	TEX15 (ENSG00000133863) #29	PURG (ENSG00000172733) #30	WRN (ENSG00000165392) #31	NRG1 (ENSG00000157168) #32	ENSG00000286131	FUT10 (ENSG00000172728) #34	TTI2 (ENSG00000129696) #36	MAK16 (ENSG00000198042) #35	RNF122 (ENSG00000133874) #37
Pan	ANCESTRAL SPECIES	30	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00910000147585	ENSGT00940000155500	ENSGT00940000159066 #18	ENSGT00940000153487.b.b.i.b	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT00950000183198.c.a.a.a.a.l.a.a	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00910000146897.a.a	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00940000154421.a.b	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Bonobo	MODERN SPECIES	21	ZNF395 (ENSPPAG00000029300)	FBXO16 (ENSPPAG00000030694)	FZD3 (ENSPPAG00000032462)	EXTL3 (ENSPPAG00000033582)	ENSPPAG00000027198	INTS9 (ENSPPAG00000041473)	HMBOX1 (ENSPPAG00000026235)	ENSPPAG00000036843	KIF13B (ENSPPAG00000042259)	DUSP4 (ENSPPAG00000036541) #18	ENSPPAG00000043687	SARAF (ENSPPAG00000032572) #19	ENSPPAG00000036229 #20	ENSPPAG00000010617	MBOAT4 (ENSPPAG00000032737) #21	DCTN6 (ENSPPAG00000035745) #22	ENSPPAG00000028266	ENSPPAG00000041133	ENSPPAG00000033108 #23	GTF2E2 (ENSPPAG00000030725) #25	SMIM18 (ENSPPAG00000033127) #24	GSR (ENSPPAG00000035261) #26	UBXN8 (ENSPPAG00000034114) #27	PPP2CB (ENSPPAG00000035602) #28	TEX15 (ENSPPAG00000039500) #29	PURG (ENSPPAG00000033829) #30	WRN (ENSPPAG00000036871) #31	ENSPPAG00000027204	NRG1 (ENSPPAG00000029556) #32	FUT10 (ENSPPAG00000034485) #34	ENSPPAG00000030081
Chimpanzee	MODERN SPECIES	21	ENSPTRG00000043531	PNOC (ENSPTRG00000020116)	ZNF395 (ENSPTRG00000020119)	FBXO16 (ENSPTRG00000034416)	FZD3 (ENSPTRG00000020122)	EXTL3 (ENSPTRG00000020124)	INTS9 (ENSPTRG00000020125)	HMBOX1 (ENSPTRG00000020127)	KIF13B (ENSPTRG00000023437)	ENSPTRG00000051054	DUSP4 (ENSPTRG00000020129) #18	ENSPTRG00000043672	SARAF (ENSPTRG00000020131) #19	LEPROTL1 (ENSPTRG00000039951) #20	MBOAT4 (ENSPTRG00000020133) #21	DCTN6 (ENSPTRG00000020134) #22	ENSPTRG00000043386	ENSPTRG00000044623	RBPMS (ENSPTRG00000020135) #23	GTF2E2 (ENSPTRG00000022529) #25	ENSPTRG00000052031	GSR (ENSPTRG00000020138) #26	UBXN8 (ENSPTRG00000049759) #27	PPP2CB (ENSPTRG00000045665) #28	TEX15 (ENSPTRG00000020142) #29	PURG (ENSPTRG00000020143) #30	WRN (ENSPTRG00000020145) #31	ENSPTRG00000050464	NRG1 (ENSPTRG00000020146) #32	FUT10 (ENSPTRG00000020148) #34	ENSPTRG00000044792
Platyrrhini	ANCESTRAL SPECIES	29	ENSGT00950000183074.B.a.b	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01050000244941.A.q.a.a	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00940000163468.l.a	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Mas night monkey	MODERN SPECIES	1152								MFHAS1 (ENSANAG00000030462) #14	ERI1 (ENSANAG00000023618) #15	TNKS (ENSANAG00000022197) #17	DUSP4 (ENSANAG00000021136) #18	ENSANAG00000030025	ENSANAG00000034265 #19	LEPROTL1 (ENSANAG00000030886) #20	MBOAT4 (ENSANAG00000024166) #21	DCTN6 (ENSANAG00000024624) #22	ENSANAG00000032857	RBPMS (ENSANAG00000028150) #23	GTF2E2 (ENSANAG00000031168) #25	ENSANAG00000036179	GSR (ENSANAG00000026592) #26	UBXN8 (ENSANAG00000023363) #27	ENSANAG00000036486 #28	TEX15 (ENSANAG00000019670) #29	PURG (ENSANAG00000037667) #30	WRN (ENSANAG00000032806) #31	ENSANAG00000030059
Cebidae	ANCESTRAL SPECIES	30	ENSGT00950000183074.B.a.b	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000165777	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01050000244941.A.q.a.a	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00940000163468.l.a	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Cebidae_a	ANCESTRAL SPECIES	53	ENSGT00950000183074.B.a.b	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00390000010799.u.b.a.b.a.b.b.a	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT01050000244941.A.q.a.a	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00940000163468.l.a	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Bolivian squirrel monkey	MODERN SPECIES	138																DCTN6 (ENSSBOG00000027970) #22	ENSSBOG00000033894	RBPMS (ENSSBOG00000026670) #23	GTF2E2 (ENSSBOG00000020875) #25	ENSSBOG00000025897	GSR (ENSSBOG00000021511) #26	UBXN8 (ENSSBOG00000028096) #27	PPP2CB (ENSSBOG00000031510) #28	ENSSBOG00000024975	TEX15 (ENSSBOG00000027196) #29	PURG (ENSSBOG00000017596) #30	WRN (ENSSBOG00000027238) #31	ENSSBOG00000020812	NRG1 (ENSSBOG00000024083) #32	FUT10 (ENSSBOG00000027017) #34	ENSSBOG00000025871
Capuchin	MODERN SPECIES	5	ENSCCAG00000033627	ENSCCAG00000022045	DLC1 (ENSCCAG00000008032) #8	TRMT9B (ENSCCAG00000032783) #9	LONRF1 (ENSCCAG00000019553) #10	PRAG1 (ENSCCAG00000025342) #11	ENSCCAG00000032742	MFHAS1 (ENSCCAG00000024993) #14	ERI1 (ENSCCAG00000032048) #15	PPP1R3B (ENSCCAG00000001875) #16	TNKS (ENSCCAG00000020538) #17	DUSP4 (ENSCCAG00000036753) #18	SARAF (ENSCCAG00000027268) #19	LEPROTL1 (ENSCCAG00000033916) #20	MBOAT4 (ENSCCAG00000037994) #21	DCTN6 (ENSCCAG00000026928) #22	ENSCCAG00000022911	ENSCCAG00000001486	RBPMS (ENSCCAG00000033226) #23	GTF2E2 (ENSCCAG00000016587) #25	ENSCCAG00000022387	GSR (ENSCCAG00000005673) #26	UBXN8 (ENSCCAG00000023006) #27	PPP2CB (ENSCCAG00000032780) #28	TEX15 (ENSCCAG00000030674) #29	PURG (ENSCCAG00000029224) #30	WRN (ENSCCAG00000023793) #31	ENSCCAG00000031210	NRG1 (ENSCCAG00000035317) #32	FUT10 (ENSCCAG00000030510) #34	ENSCCAG00000024345
Marmoset	MODERN SPECIES	4	ENSCJAG00000085273	DLC1 (ENSCJAG00000012014) #8	TRMT9B (ENSCJAG00000012066) #9	LONRF1 (ENSCJAG00000012070) #10	PRAG1 (ENSCJAG00000012108) #11	MFHAS1 (ENSCJAG00000012125) #14	ERI1 (ENSCJAG00000012129) #15	PPP1R3B (ENSCJAG00000065392) #16	TNKS (ENSCJAG00000012143) #17	DUSP4 (ENSCJAG00000038284) #18	ENSCJAG00000072849	SARAF (ENSCJAG00000012289) #19	ENSCJAG00000086817	ENSCJAG00000012319 #20	MBOAT4 (ENSCJAG00000012334) #21	DCTN6 (ENSCJAG00000012338) #22	ENSCJAG00000075651	RBPMS (ENSCJAG00000012366) #23	GTF2E2 (ENSCJAG00000012399) #25	GSR (ENSCJAG00000012407) #26	UBXN8 (ENSCJAG00000012451) #27	PPP2CB (ENSCJAG00000012460) #28	TEX15 (ENSCJAG00000043077) #29	PURG (ENSCJAG00000012509) #30	WRN (ENSCJAG00000012511) #31	NRG1 (ENSCJAG00000007626) #32	ENSCJAG00000084043	FUT10 (ENSCJAG00000007543) #34	MAK16 (ENSCJAG00000061000) #35	TTI2 (ENSCJAG00000007580) #36	RNF122 (ENSCJAG00000040195) #37
Laurasiatheria	ANCESTRAL SPECIES	24	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Artiodactyla	ANCESTRAL SPECIES	24	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Suina	ANCESTRAL SPECIES	3	ENSGT00390000005140.b.b.d	ENSGT00940000160622	ENSGT00530000063529.C	ENSGT00940000165552	ENSGT00940000162302	ENSGT01030000234550.b	ENSGT00940000154975	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00980000201429	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Chacoan peccary	MODERN SPECIES	88	PLEKHB2 (ENSCWAG00000015920)	FAM168B (ENSCWAG00000015891)	ENSCWAG00000015670	AMER3 (ENSCWAG00000015615)	ENSCWAG00000015521	OCA2 (ENSCWAG00000015129)	HERC2 (ENSCWAG00000015028)	MFHAS1 (ENSCWAG00000014933) #14	ERI1 (ENSCWAG00000014890) #15	PPP1R3B (ENSCWAG00000014862) #16	TNKS (ENSCWAG00000014789) #17	DUSP4 (ENSCWAG00000014754) #18	SARAF (ENSCWAG00000014696) #19	LEPROTL1 (ENSCWAG00000014639) #20	MBOAT4 (ENSCWAG00000014579) #21	DCTN6 (ENSCWAG00000014524) #22	RBPMS (ENSCWAG00000014417) #23	SMIM18 (ENSCWAG00000014380) #24	GTF2E2 (ENSCWAG00000014254) #25	GSR (ENSCWAG00000014067) #26	UBXN8 (ENSCWAG00000013925) #27	PPP2CB (ENSCWAG00000013828) #28	TEX15 (ENSCWAG00000013799) #29	PURG (ENSCWAG00000013751) #30	WRN (ENSCWAG00000013659) #31	ENSCWAG00000013618
Pig	MODERN SPECIES	6	ENSSSCG00000056313	ENSSSCG00000055904	ENSSSCG00000016392	ENSSSCG00000016393	OCA2 (ENSSSCG00000057372)	HERC2 (ENSSSCG00000015853)	ENSSSCG00000047283	MFHAS1 (ENSSSCG00000035366) #14	ERI1 (ENSSSCG00000033634) #15	PPP1R3B (ENSSSCG00000022797) #16	TNKS (ENSSSCG00000015851) #17	DUSP4 (ENSSSCG00000015850) #18	SARAF (ENSSSCG00000033402) #19	LEPROTL1 (ENSSSCG00000038085) #20	MBOAT4 (ENSSSCG00000015847) #21	DCTN6 (ENSSSCG00000038895) #22	RBPMS (ENSSSCG00000015846) #23	ENSSSCG00000047196	SMIM18 (ENSSSCG00000033236) #24	GTF2E2 (ENSSSCG00000015845) #25	GSR (ENSSSCG00000015844) #26	UBXN8 (ENSSSCG00000015843) #27	PPP2CB (ENSSSCG00000015842) #28	ENSSSCG00000015841 #29	PURG (ENSSSCG00000038933) #30	WRN (ENSSSCG00000015840) #31	ENSSSCG00000062031	ENSSSCG00000059617	NRG1 (ENSSSCG00000015839) #32	ENSSSCG00000036767	ENSSSCG00000042616
Artiodactyla_a	ANCESTRAL SPECIES	25	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Camelidae	ANCESTRAL SPECIES	35	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Alpaca	MODERN SPECIES	472														SARAF (ENSVPAG00000004766) #19	LEPROTL1 (ENSVPAG00000004768) #20	DCTN6 (ENSVPAG00000004770) #22
Arabian camel	MODERN SPECIES	18	C8orf48 (ENSCDRG00005019483) #7	DLC1 (ENSCDRG00005019363) #8	TRMT9B (ENSCDRG00005019336) #9	ENSCDRG00005019308 #10	PRAG1 (ENSCDRG00005019288) #11	ENSCDRG00005019175 #13	MFHAS1 (ENSCDRG00005019131) #14	ERI1 (ENSCDRG00005019095) #15	ENSCDRG00005019084	PPP1R3B (ENSCDRG00005019068) #16	TNKS (ENSCDRG00005018988) #17	DUSP4 (ENSCDRG00005018954) #18	SARAF (ENSCDRG00005018915) #19	LEPROTL1 (ENSCDRG00005018877) #20	MBOAT4 (ENSCDRG00005018852) #21	DCTN6 (ENSCDRG00005018808) #22	ENSCDRG00005018738 #23	SMIM18 (ENSCDRG00005018711) #24	GTF2E2 (ENSCDRG00005018690) #25	GSR (ENSCDRG00005018652) #26	UBXN8 (ENSCDRG00005018586) #27	PPP2CB (ENSCDRG00005018494) #28	TEX15 (ENSCDRG00005018446) #29	PURG (ENSCDRG00005018427) #30	WRN (ENSCDRG00005018137) #31	NRG1 (ENSCDRG00005017594) #32	ENSCDRG00005017518	FUT10 (ENSCDRG00005017483) #34	MAK16 (ENSCDRG00005017434) #35	TTI2 (ENSCDRG00005017367) #36	RNF122 (ENSCDRG00005017324) #37
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Pecora	ANCESTRAL SPECIES	31	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Yarkand deer	MODERN SPECIES	25	LONRF1 (ENSCHYG00000021228) #10	PRAG1 (ENSCHYG00000021367) #11	CLDN23 (ENSCHYG00000021452) #12	ENSCHYG00000021488 #13	MFHAS1 (ENSCHYG00000022029) #14	ERI1 (ENSCHYG00000022132) #15	PPP1R3B (ENSCHYG00000022268) #16	TNKS (ENSCHYG00000022327) #17	ENSCHYG00000022533	ENSCHYG00000022563	DUSP4 (ENSCHYG00000022663) #18	ENSCHYG00000022743	SARAF (ENSCHYG00000022785) #19	LEPROTL1 (ENSCHYG00000022848) #20	MBOAT4 (ENSCHYG00000022881) #21	DCTN6 (ENSCHYG00000022906) #22	RBPMS (ENSCHYG00000022965) #23	GTF2E2 (ENSCHYG00000023109) #25	SMIM18 (ENSCHYG00000023176) #24	ENSCHYG00000023201 #26	UBXN8 (ENSCHYG00000023355) #27	PPP2CB (ENSCHYG00000014632) #28	TEX15 (ENSCHYG00000014679) #29	PURG (ENSCHYG00000014784) #30	ENSCHYG00000014838	WRN (ENSCHYG00000014889) #31	NRG1 (ENSCHYG00000015541) #32	FUT10 (ENSCHYG00000018055) #34	MAK16 (ENSCHYG00000018167) #35	TTI2 (ENSCHYG00000018334) #36	ENSCHYG00000018522 #37
Percora_a	ANCESTRAL SPECIES	31	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000160485.d	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Bovidae	ANCESTRAL SPECIES	30	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000160485.d	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Caprinae	ANCESTRAL SPECIES	31	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00390000006975 #12	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000160485.d	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.cb.a #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859.c #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Goat	MODERN SPECIES	19	TRMT9B (ENSCHIG00000025183) #9	LONRF1 (ENSCHIG00000020442) #10	PRAG1 (ENSCHIG00000011793) #11	ENSCHIG00000023645 #13	MFHAS1 (ENSCHIG00000017108) #14	ERI1 (ENSCHIG00000011907) #15	PPP1R3B (ENSCHIG00000006614) #16	ENSCHIG00000024143	TNKS (ENSCHIG00000007929) #17	ENSCHIG00000025550	DUSP4 (ENSCHIG00000011289) #18	ENSCHIG00000026850	SARAF (ENSCHIG00000012032) #19	LEPROTL1 (ENSCHIG00000021192) #20	MBOAT4 (ENSCHIG00000001062) #21	DCTN6 (ENSCHIG00000020652) #22	RBPMS (ENSCHIG00000027156) #23	ENSCHIG00000022177	SMIM18 (ENSCHIG00000006114) #24	ENSCHIG00000021273 #25	GSR (ENSCHIG00000016848) #26	UBXN8 (ENSCHIG00000022025) #27	ENSCHIG00000008011 #28	PURG (ENSCHIG00000024210) #30	WRN (ENSCHIG00000014991) #31	NRG1 (ENSCHIG00000002290) #32	FUT10 (ENSCHIG00000025805) #34	ENSCHIG00000017057 #35	TTI2 (ENSCHIG00000027034) #36	RNF122 (ENSCHIG00000007153) #37	DUSP26 (ENSCHIG00000019000)
Rambouillet Sheep	MODERN SPECIES	18	ENSOARG00020024025	ENSOARG00020024034	TRMT9B (ENSOARG00020024043) #9	LONRF1 (ENSOARG00020024079) #10	ENSOARG00020024166	ENSOARG00020024190 #12	MFHAS1 (ENSOARG00020024215) #14	ENSOARG00020024244 #12	ERI1 (ENSOARG00020024255) #15	PPP1R3B (ENSOARG00020024278) #16	TNKS (ENSOARG00020024333) #17	DUSP4 (ENSOARG00020024395) #18	SARAF (ENSOARG00020024418) #19	LEPROTL1 (ENSOARG00020024432) #20	MBOAT4 (ENSOARG00020024438) #21	DCTN6 (ENSOARG00020024447) #22	RBPMS (ENSOARG00020024472) #23	GTF2E2 (ENSOARG00020024521) #25	SMIM18 (ENSOARG00020024548) #24	ENSOARG00020024560 #26	UBXN8 (ENSOARG00020006469) #27	ENSOARG00020006789 #28	TEX15 (ENSOARG00020006861) #29	PURG (ENSOARG00020006924) #30	NRG1 (ENSOARG00020007228) #32	FUT10 (ENSOARG00020010547) #34	MAK16 (ENSOARG00020010915) #35	TTI2 (ENSOARG00020010997) #36	RNF122 (ENSOARG00020011268) #37	DUSP26 (ENSOARG00020011341)	UNC5D (ENSOARG00020011472)
Bovinae	ANCESTRAL SPECIES	36	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000160485.d	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986.e #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.ab #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00950000185250.a	ENSGT00940000157326.g.b #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35
Bos	ANCESTRAL SPECIES	33	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B.a #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000160485.d	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986.e #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.ab.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00950000185250.a	ENSGT00940000157326.g.b #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35
Bos_a	ANCESTRAL SPECIES	31	ENSGT00440000033329.a.a.b #10	ENSGT00940000173025	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000157521.a.b	ENSGT00940000158928 #14	ENSGT00530000063205.B.a #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000160485.d	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986.e #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.ab.a.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Wild yak	MODERN SPECIES	2204																DCTN6 (ENSBMUG00000014725) #22	RBPMS (ENSBMUG00000014680) #23	SMIM18 (ENSBMUG00000014616) #24	GTF2E2 (ENSBMUG00000014607) #25
Domestic yak	MODERN SPECIES	20	ENSBGRG00000007440 #13	ENSBGRG00000007327	MFHAS1 (ENSBGRG00000007209) #14	ENSBGRG00000007141 #15	ENSBGRG00000007106	PPP1R3B (ENSBGRG00000025712) #16	TNKS (ENSBGRG00000025654) #17	ENSBGRG00000025645	DUSP4 (ENSBGRG00000025603) #18	ENSBGRG00000025583	ENSBGRG00000025569	ENSBGRG00000025563	SARAF (ENSBGRG00000025546) #19	LEPROTL1 (ENSBGRG00000025525) #20	MBOAT4 (ENSBGRG00000025516) #21	DCTN6 (ENSBGRG00000025501) #22	RBPMS (ENSBGRG00000025458) #23	SMIM18 (ENSBGRG00000025437) #24	GTF2E2 (ENSBGRG00000025414) #25	ENSBGRG00000025167 #26	UBXN8 (ENSBGRG00000025073) #27	ENSBGRG00000025021 #28	TEX15 (ENSBGRG00000024980) #29	PURG (ENSBGRG00000024954) #30	WRN (ENSBGRG00000024851) #31	NRG1 (ENSBGRG00000024055) #32	FUT10 (ENSBGRG00000023882) #34	MAK16 (ENSBGRG00000023705) #35	TTI2 (ENSBGRG00000023566) #36	RNF122 (ENSBGRG00000023501) #37	DUSP26 (ENSBGRG00000023452)
Bos_b	ANCESTRAL SPECIES	35	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B.a #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000160485.d	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.b	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986.e #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.ab.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00950000185250.a	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
Hybrid Bos Indicus	MODERN SPECIES	19	DLC1 (ENSBIXG00005012258) #8	TRMT9B (ENSBIXG00005000270) #9	LONRF1 (ENSBIXG00005005822) #10	PRAG1 (ENSBIXG00005012100) #11	CLDN23 (ENSBIXG00005012050) #12	ENSBIXG00005012017 #13	MFHAS1 (ENSBIXG00005011912) #14	ENSBIXG00005001190 #15	PPP1R3B (ENSBIXG00005011848) #16	TNKS (ENSBIXG00005011776) #17	DUSP4 (ENSBIXG00005011666) #18	SARAF (ENSBIXG00005001131) #19	ENSBIXG00005011558	LEPROTL1 (ENSBIXG00005011548) #20	MBOAT4 (ENSBIXG00005011503) #21	DCTN6 (ENSBIXG00005011479) #22	ENSBIXG00005001104 #23	GTF2E2 (ENSBIXG00005006917) #25	SMIM18 (ENSBIXG00005011292) #24	GSR (ENSBIXG00005011265) #26	ENSBIXG00005001037	ENSBIXG00005011202	UBXN8 (ENSBIXG00005001033) #27	ENSBIXG00005011125 #28	TEX15 (ENSBIXG00005006421) #29	PURG (ENSBIXG00005011064) #30	WRN (ENSBIXG00005007468) #31	NRG1 (ENSBIXG00005010916) #32	ENSBIXG00005010504	FUT10 (ENSBIXG00005000890) #34	MAK16 (ENSBIXG00005010420) #35
Cow	MODERN SPECIES	19	TRMT9B (ENSBTAG00000008950) #9	LONRF1 (ENSBTAG00000020084) #10	PRAG1 (ENSBTAG00000000357) #11	CLDN23 (ENSBTAG00000007051) #12	ENSBTAG00000053191 #13	MFHAS1 (ENSBTAG00000015913) #14	ERI1 (ENSBTAG00000009685) #15	PPP1R3B (ENSBTAG00000010606) #16	TNKS (ENSBTAG00000001463) #17	ENSBTAG00000006562	DUSP4 (ENSBTAG00000044208) #18	SARAF (ENSBTAG00000013579) #19	ENSBTAG00000053762	LEPROTL1 (ENSBTAG00000013581) #20	MBOAT4 (ENSBTAG00000000743) #21	DCTN6 (ENSBTAG00000000744) #22	RBPMS (ENSBTAG00000033727) #23	GTF2E2 (ENSBTAG00000012691) #25	SMIM18 (ENSBTAG00000051612) #24	GSR (ENSBTAG00000007115) #26	UBXN8 (ENSBTAG00000004173) #27	PPP2CB (ENSBTAG00000009245) #28	TEX15 (ENSBTAG00000017083) #29	PURG (ENSBTAG00000039328) #30	WRN (ENSBTAG00000021592) #31	NRG1 (ENSBTAG00000054057) #32	NRG1 (ENSBTAG00000004150) #32	ENSBTAG00000008325	FUT10 (ENSBTAG00000005454) #34	MAK16 (ENSBTAG00000033504) #35	TTI2 (ENSBTAG00000015463) #36
American bison	MODERN SPECIES	3033	DLC1 (ENSBBBG00000020846) #8	ENSBBBG00000006914	TRMT9B (ENSBBBG00000020875) #9	LONRF1 (ENSBBBG00000020902) #10	PRAG1 (ENSBBBG00000020917) #11	CLDN23 (ENSBBBG00000005627) #12	MFHAS1 (ENSBBBG00000005630) #14	ERI1 (ENSBBBG00000020969) #15	PPP1R3B (ENSBBBG00000005637) #16	TNKS (ENSBBBG00000021042) #17	ENSBBBG00000021064	DUSP4 (ENSBBBG00000007057) #18	SARAF (ENSBBBG00000021094) #19	LEPROTL1 (ENSBBBG00000021104) #20	MBOAT4 (ENSBBBG00000021108) #21	DCTN6 (ENSBBBG00000021119) #22	RBPMS (ENSBBBG00000021143) #23	SMIM18 (ENSBBBG00000021149) #24	GTF2E2 (ENSBBBG00000021159) #25	ENSBBBG00000021281 #26	UBXN8 (ENSBBBG00000021318) #27	ENSBBBG00000005700 #28	ENSBBBG00000021357 #29	PURG (ENSBBBG00000021368) #30	WRN (ENSBBBG00000021421) #31	NRG1 (ENSBBBG00000021603) #32	ENSBBBG00000021620	FUT10 (ENSBBBG00000021641) #34	MAK16 (ENSBBBG00000005754) #35	TTI2 (ENSBBBG00000021704) #36	ENSBBBG00000006919
Siberian musk deer	MODERN SPECIES	43			PRAG1 (ENSMMSG00000000388) #11	CLDN23 (ENSMMSG00000000383) #12	MFHAS1 (ENSMMSG00000000303) #14	ERI1 (ENSMMSG00000000273) #15	PPP1R3B (ENSMMSG00000000249) #16	ENSMMSG00000000230	ENSMMSG00000000216	TNKS (ENSMMSG00000000139) #17	ENSMMSG00000000107	DUSP4 (ENSMMSG00000000084) #18	SARAF (ENSMMSG00000017521) #19	LEPROTL1 (ENSMMSG00000017477) #20	MBOAT4 (ENSMMSG00000017455) #21	DCTN6 (ENSMMSG00000017428) #22	ENSMMSG00000017399	ENSMMSG00000017326 #23	SMIM18 (ENSMMSG00000017313) #24	GTF2E2 (ENSMMSG00000017284) #25
Cetacea	ANCESTRAL SPECIES	22	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.z #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d.c #37	ENSGT00940000158107
Blue whale	MODERN SPECIES	13	C8orf48 (ENSBMSG00010022201) #7	DLC1 (ENSBMSG00010022203) #8	TRMT9B (ENSBMSG00010022212) #9	LONRF1 (ENSBMSG00010022214) #10	PRAG1 (ENSBMSG00010022221) #11	CLDN23 (ENSBMSG00010022224) #12	MFHAS1 (ENSBMSG00010022226) #14	ERI1 (ENSBMSG00010022231) #15	PPP1R3B (ENSBMSG00010022233) #16	ENSBMSG00010022235	TNKS (ENSBMSG00010022237) #17	DUSP4 (ENSBMSG00010022241) #18	SARAF (ENSBMSG00010022243) #19	LEPROTL1 (ENSBMSG00010013803) #20	MBOAT4 (ENSBMSG00010013839) #21	DCTN6 (ENSBMSG00010013858) #22	RBPMS (ENSBMSG00010013922) #23	GTF2E2 (ENSBMSG00010013999) #25	SMIM18 (ENSBMSG00010014049) #24	GSR (ENSBMSG00010014090) #26	UBXN8 (ENSBMSG00010014264) #27	ENSBMSG00010014343 #28	TEX15 (ENSBMSG00010014389) #29	PURG (ENSBMSG00010014438) #30	WRN (ENSBMSG00010014474) #31	NRG1 (ENSBMSG00010014675) #32	ENSBMSG00010015301	ENSBMSG00010015316	FUT10 (ENSBMSG00010015342) #34	MAK16 (ENSBMSG00010015377) #35	TTI2 (ENSBMSG00010015408) #36
Odontoceti	ANCESTRAL SPECIES	23	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.z #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d.c #37	ENSGT00940000158107
Sperm whale	MODERN SPECIES	12	ENSPCTG00005021448	SGCZ (ENSPCTG00005021373)	C20H8orf48 (ENSPCTG00005021360) #7	DLC1 (ENSPCTG00005021097) #8	TRMT9B (ENSPCTG00005021048) #9	LONRF1 (ENSPCTG00005020974) #10	PRAG1 (ENSPCTG00005020943) #11	CLDN23 (ENSPCTG00005020934) #12	MFHAS1 (ENSPCTG00005020910) #14	ERI1 (ENSPCTG00005020855) #15	TNKS (ENSPCTG00005020820) #17	ENSPCTG00005020793	SARAF (ENSPCTG00005020764) #19	LEPROTL1 (ENSPCTG00005020714) #20	MBOAT4 (ENSPCTG00005020685) #21	DCTN6 (ENSPCTG00005020659) #22	ENSPCTG00005020581 #23	SMIM18 (ENSPCTG00005020563) #24	GTF2E2 (ENSPCTG00005020537) #25	GSR (ENSPCTG00005020212) #26	UBXN8 (ENSPCTG00005020169) #27	PPP2CB (ENSPCTG00005020128) #28	TEX15 (ENSPCTG00005020014) #29	ENSPCTG00005019977	PURG (ENSPCTG00005019937) #30	WRN (ENSPCTG00005019824) #31	ENSPCTG00005019780	NRG1 (ENSPCTG00005019197) #32	FUT10 (ENSPCTG00005019140) #34	MAK16 (ENSPCTG00005019048) #35	TTI2 (ENSPCTG00005019005) #36
Odontoceti_a	ANCESTRAL SPECIES	25	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.z #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d.c #37	ENSGT00940000158107
Dolphin	MODERN SPECIES	3233														LEPROTL1 (ENSTTRG00000012410) #20	MBOAT4 (ENSTTRG00000012429) #21	DCTN6 (ENSTTRG00000012439) #22	RBPMS (ENSTTRG00000012451) #23	GTF2E2 (ENSTTRG00000012464) #25	GSR (ENSTTRG00000012471) #26
Odontoceti_b	ANCESTRAL SPECIES	23	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.z #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d.c #37	ENSGT00940000158107
Monodontidae	ANCESTRAL SPECIES	24	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b.z #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d.c #37	ENSGT00940000158107
Narwhal	MODERN SPECIES	303	C8orf48 (ENSMMNG00015010946) #7	DLC1 (ENSMMNG00015010869) #8	TRMT9B (ENSMMNG00015010812) #9	LONRF1 (ENSMMNG00015010770) #10	PRAG1 (ENSMMNG00015010750) #11	CLDN23 (ENSMMNG00015010736) #12	MFHAS1 (ENSMMNG00015010716) #14	ERI1 (ENSMMNG00015010682) #15	PPP1R3B (ENSMMNG00015010675) #16	ENSMMNG00015010665	TNKS (ENSMMNG00015010643) #17	DUSP4 (ENSMMNG00015010625) #18	SARAF (ENSMMNG00015010608) #19	LEPROTL1 (ENSMMNG00015010585) #20	MBOAT4 (ENSMMNG00015010572) #21	DCTN6 (ENSMMNG00015010544) #22	RBPMS (ENSMMNG00015010446) #23	GTF2E2 (ENSMMNG00015010384) #25	GSR (ENSMMNG00015010121) #26	UBXN8 (ENSMMNG00015010033) #27	PPP2CB (ENSMMNG00015010002) #28	TEX15 (ENSMMNG00015009968) #29	PURG (ENSMMNG00015009942) #30	WRN (ENSMMNG00015009891) #31	NRG1 (ENSMMNG00015009667) #32	FUT10 (ENSMMNG00015009548) #34	MAK16 (ENSMMNG00015009532) #35	TTI2 (ENSMMNG00015009516) #36	ENSMMNG00015009493 #37	DUSP26 (ENSMMNG00015009481)	UNC5D (ENSMMNG00015009411)
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	30	C8orf48 (ENSDLEG00000007221) #7	KIAA1456 (ENSDLEG00000007232) #9	LONRF1 (ENSDLEG00000007240) #10	PRAG1 (ENSDLEG00000007254) #11	CLDN23 (ENSDLEG00000007261) #12	ENSDLEG00000007269 #13	MFHAS1 (ENSDLEG00000007279) #14	ERI1 (ENSDLEG00000007285) #15	PPP1R3B (ENSDLEG00000007297) #16	ENSDLEG00000007307	TNKS (ENSDLEG00000007317) #17	DUSP4 (ENSDLEG00000007350) #18	SARAF (ENSDLEG00000007355) #19	LEPROTL1 (ENSDLEG00000007359) #20	MBOAT4 (ENSDLEG00000007367) #21	DCTN6 (ENSDLEG00000006362) #22	RBPMS (ENSDLEG00000006366) #23	GTF2E2 (ENSDLEG00000006369) #25	SMIM18 (ENSDLEG00000006378) #24	GSR (ENSDLEG00000006381) #26	UBXN8 (ENSDLEG00000006389) #27	PPP2CB (ENSDLEG00000006398) #28	ENSDLEG00000006400 #29	PURG (ENSDLEG00000006406) #30	WRN (ENSDLEG00000006407) #31	NRG1 (ENSDLEG00000006428) #32	FUT10 (ENSDLEG00000006439) #34	MAK16 (ENSDLEG00000006446) #35	TTI2 (ENSDLEG00000006453) #36	RNF122 (ENSDLEG00000006461) #37	DUSP26 (ENSDLEG00000006471)
Beluga whale	MODERN SPECIES	44	ENSDLEG00000011657	ACTN1 (ENSDLEG00000011467)	DCAF5 (ENSDLEG00000011411)	EXD2 (ENSDLEG00000011381)	GALNT16 (ENSDLEG00000011350)	ERH (ENSDLEG00000011339)	SLC39A9 (ENSDLEG00000011324)	PLEKHD1 (ENSDLEG00000011303)	CCDC177 (ENSDLEG00000011299)	SUSD6 (ENSDLEG00000011277)	SRSF5 (ENSDLEG00000011218)	SLC10A1 (ENSDLEG00000011205)	ENSDLEG00000011179	SMOC1 (ENSDLEG00000011150)	SLC8A3 (ENSDLEG00000011135)	ENSDLEG00000011127 #22	ENSDLEG00000011123	ENSDLEG00000011112	ENSDLEG00000011100	ADAM20 (ENSDLEG00000010996)	MED6 (ENSDLEG00000010944)	TTC9 (ENSDLEG00000010917)	MAP3K9 (ENSDLEG00000010862)	PCNX1 (ENSDLEG00000009426)	SIPA1L1 (ENSDLEG00000009117)	RGS6 (ENSDLEG00000008923)	DPF3 (ENSDLEG00000008868)
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	13	C8orf48 (ENSPSNG00000017158) #7	DLC1 (ENSPSNG00000017218) #8	TRMT9B (ENSPSNG00000017430) #9	LONRF1 (ENSPSNG00000017491) #10	PRAG1 (ENSPSNG00000017650) #11	CLDN23 (ENSPSNG00000017678) #12	MFHAS1 (ENSPSNG00000017701) #14	ERI1 (ENSPSNG00000017757) #15	PPP1R3B (ENSPSNG00000017792) #16	ENSPSNG00000017808	TNKS (ENSPSNG00000017835) #17	DUSP4 (ENSPSNG00000017894) #18	SARAF (ENSPSNG00000017938) #19	LEPROTL1 (ENSPSNG00000017968) #20	MBOAT4 (ENSPSNG00000018037) #21	ENSPSNG00000018089 #22	RBPMS (ENSPSNG00000018165) #23	GTF2E2 (ENSPSNG00000018348) #25	SMIM18 (ENSPSNG00000018403) #24	GSR (ENSPSNG00000018421) #26	UBXN8 (ENSPSNG00000018830) #27	PPP2CB (ENSPSNG00000018981) #28	ENSPSNG00000019022 #29	PURG (ENSPSNG00000019062) #30	WRN (ENSPSNG00000019114) #31	NRG1 (ENSPSNG00000019274) #32	FUT10 (ENSPSNG00000019854) #34	MAK16 (ENSPSNG00000019895) #35	TTI2 (ENSPSNG00000019937) #36	ENSPSNG00000019973 #37	DUSP26 (ENSPSNG00000020003)
Vaquita	MODERN SPECIES	11	ENSPSNG00000007935	ACTN1 (ENSPSNG00000008056)	DCAF5 (ENSPSNG00000008325)	EXD2 (ENSPSNG00000008392)	GALNT16 (ENSPSNG00000008485)	ERH (ENSPSNG00000008539)	SLC39A9 (ENSPSNG00000008596)	PLEKHD1 (ENSPSNG00000008697)	CCDC177 (ENSPSNG00000008725)	SUSD6 (ENSPSNG00000008740)	ENSPSNG00000008804	SLC10A1 (ENSPSNG00000008929)	SMOC1 (ENSPSNG00000009005)	ENSPSNG00000009134	SLC8A3 (ENSPSNG00000009371)	ENSPSNG00000009489 #22	COX16 (ENSPSNG00000009527)	SYNJ2BP (ENSPSNG00000009565)	ENSPSNG00000009597	ADAM20 (ENSPSNG00000009613)	MED6 (ENSPSNG00000009675)	TTC9 (ENSPSNG00000009761)	MAP3K9 (ENSPSNG00000009831)	PCNX1 (ENSPSNG00000010019)	SIPA1L1 (ENSPSNG00000010540)	RGS6 (ENSPSNG00000011020)	ENSPSNG00000012992	DPF3 (ENSPSNG00000013076)	ENSPSNG00000013330	ZFYVE1 (ENSPSNG00000013598)	RBM25 (ENSPSNG00000013760)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Laurasiatheria_c	ANCESTRAL SPECIES	26	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Equus	ANCESTRAL SPECIES	28	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00940000160107.h	ENSGT00940000164373	ENSGT00940000156876	ENSGT00730000111328	ENSGT00940000161941	ENSGT00940000161161.b	ENSGT00940000161945	ENSGT00940000161796
Donkey	MODERN SPECIES	19	C8orf48 (ENSEASG00005017032) #7	ENSEASG00005036148 ##8	DLC1 (ENSEASG00005017018) #8	TRMT9B (ENSEASG00005037430) #9	ENSEASG00005017005 #10	ENSEASG00005017002 #11	ENSEASG00005017001 #12	MFHAS1 (ENSEASG00005016986) #14	ERI1 (ENSEASG00005016982) #15	PPP1R3B (ENSEASG00005032234) #16	ENSEASG00005016972 #17	ENSEASG00005016971 #18	ENSEASG00005016969 #19	LEPROTL1 (ENSEASG00005033427) #20	MBOAT4 (ENSEASG00005016966) #21	DCTN6 (ENSEASG00005024809) #22	RBPMS (ENSEASG00005016962) #23	GTF2E2 (ENSEASG00005016958) #25	SMIM18 (ENSEASG00005031292) #24	GSR (ENSEASG00005016953) #26	UBXN8 (ENSEASG00005016952) #27	PPP2CB (ENSEASG00005038736) #28	TEX15 (ENSEASG00005016941) #29	ENSEASG00005016935	PURG (ENSEASG00005029885) #30	WRN (ENSEASG00005016813) #31	ENSEASG00005037564	NRG1 (ENSEASG00005016767) #32	FUT10 (ENSEASG00005016764) #34	MAK16 (ENSEASG00005016762) #35	TTI2 (ENSEASG00005016757) #36
Horse	MODERN SPECIES	19	C27H8orf48 (ENSECAG00000003717) #7	DLC1 (ENSECAG00000013988) #8	TRMT9B (ENSECAG00000013811) #9	LONRF1 (ENSECAG00000012693) #10	PRAG1 (ENSECAG00000013377) #11	CLDN23 (ENSECAG00000003573) #12	ENSECAG00000012111 #13	MFHAS1 (ENSECAG00000003495) #14	ERI1 (ENSECAG00000011091) #15	PPP1R3B (ENSECAG00000011086) #16	TNKS (ENSECAG00000007431) #17	DUSP4 (ENSECAG00000004592) #18	SARAF (ENSECAG00000022913) #19	LEPROTL1 (ENSECAG00000022797) #20	MBOAT4 (ENSECAG00000003470) #21	DCTN6 (ENSECAG00000022136) #22	RBPMS (ENSECAG00000020735) #23	SMIM18 (ENSECAG00000029492) #24	GTF2E2 (ENSECAG00000017951) #25	GSR (ENSECAG00000014178) #26	UBXN8 (ENSECAG00000012944) #27	PPP2CB (ENSECAG00000011173) #28	TEX15 (ENSECAG00000010827) #29	ENSECAG00000039152	PURG (ENSECAG00000028324) #30	WRN (ENSECAG00000000110) #31	NRG1 (ENSECAG00000021343) #32	FUT10 (ENSECAG00000020319) #34	MAK16 (ENSECAG00000016532) #35	TTI2 (ENSECAG00000016076) #36	RNF122 (ENSECAG00000015301) #37
Chiroptera	ANCESTRAL SPECIES	32	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Megabat	MODERN SPECIES	618													SARAF (ENSPVAG00000016664) #19	ENSPVAG00000016666	MBOAT4 (ENSPVAG00000016668) #21	DCTN6 (ENSPVAG00000016671) #22
Microchiroptera	ANCESTRAL SPECIES	33	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.g.a #32	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Microbat	MODERN SPECIES	963	ENSMLUG00000027134	DLC1 (ENSMLUG00000013036) #8	ENSMLUG00000013032	ENSMLUG00000024640	LONRF1 (ENSMLUG00000000300) #10	PRAG1 (ENSMLUG00000000303) #11	ENSMLUG00000025949 #13	ERI1 (ENSMLUG00000006288) #15	PPP1R3B (ENSMLUG00000016137) #16	TNKS (ENSMLUG00000007233) #17	DUSP4 (ENSMLUG00000007291) #18	ENSMLUG00000022302	SARAF (ENSMLUG00000012942) #19	LEPROTL1 (ENSMLUG00000026782) #20	MBOAT4 (ENSMLUG00000015635) #21	DCTN6 (ENSMLUG00000028330) #22	RBPMS (ENSMLUG00000009391) #23	GTF2E2 (ENSMLUG00000007814) #25	ENSMLUG00000023946	GSR (ENSMLUG00000010568) #26	UBXN8 (ENSMLUG00000016846) #27	PPP2CB (ENSMLUG00000012897) #28	TEX15 (ENSMLUG00000014276) #29	ENSMLUG00000008035	ENSMLUG00000016793	ENSMLUG00000024122	PURG (ENSMLUG00000024424) #30	WRN (ENSMLUG00000005863) #31	ENSMLUG00000013804 #32	ENSMLUG00000010211 #32	ENSMLUG00000025759
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	22	C8orf48 (ENSRFEG00010004216) #7	ENSRFEG00010004211	DLC1 (ENSRFEG00010004169) #8	TRMT9B (ENSRFEG00010004140) #9	LONRF1 (ENSRFEG00010004117) #10	PRAG1 (ENSRFEG00010004105) #11	CLDN23 (ENSRFEG00010004096) #12	MFHAS1 (ENSRFEG00010004079) #14	ERI1 (ENSRFEG00010004063) #15	PPP1R3B (ENSRFEG00010004051) #16	TNKS (ENSRFEG00010004020) #17	DUSP4 (ENSRFEG00010004006) #18	SARAF (ENSRFEG00010003992) #19	LEPROTL1 (ENSRFEG00010003960) #20	MBOAT4 (ENSRFEG00010003947) #21	ENSRFEG00010003939 #22	ENSRFEG00010003933	RBPMS (ENSRFEG00010003904) #23	SMIM18 (ENSRFEG00010003874) #24	GTF2E2 (ENSRFEG00010003842) #25	GSR (ENSRFEG00010003794) #26	UBXN8 (ENSRFEG00010003736) #27	PPP2CB (ENSRFEG00010003699) #28	TEX15 (ENSRFEG00010003677) #29	PURG (ENSRFEG00010003658) #30	WRN (ENSRFEG00010003616) #31	ENSRFEG00010003574	NRG1 (ENSRFEG00010003364) #32	ENSRFEG00010003122	ENSRFEG00010003113 #22	FUT10 (ENSRFEG00010003099) #34
Greater horseshoe bat	MODERN SPECIES	22	MBOAT4 (ENSRFEG00010003947) #21	ENSRFEG00010003939 #22	ENSRFEG00010003933	RBPMS (ENSRFEG00010003904) #23	SMIM18 (ENSRFEG00010003874) #24	GTF2E2 (ENSRFEG00010003842) #25	GSR (ENSRFEG00010003794) #26	UBXN8 (ENSRFEG00010003736) #27	PPP2CB (ENSRFEG00010003699) #28	TEX15 (ENSRFEG00010003677) #29	PURG (ENSRFEG00010003658) #30	WRN (ENSRFEG00010003616) #31	ENSRFEG00010003574	NRG1 (ENSRFEG00010003364) #32	ENSRFEG00010003122	ENSRFEG00010003113 #22	FUT10 (ENSRFEG00010003099) #34	MAK16 (ENSRFEG00010003077) #35	TTI2 (ENSRFEG00010003057) #36	RNF122 (ENSRFEG00010003024) #37	DUSP26 (ENSRFEG00010003012)	UNC5D (ENSRFEG00010002856)	KCNU1 (ENSRFEG00010002708)	ZNF703 (ENSRFEG00010002677)	ERLIN2 (ENSRFEG00010002625)	PLPBP (ENSRFEG00010002573)	ADGRA2 (ENSRFEG00010002481)	BRF2 (ENSRFEG00010002432)	RAB11FIP1 (ENSRFEG00010002395)	GOT1L1 (ENSRFEG00010002367)	ADRB3 (ENSRFEG00010002348)
Carnivora	ANCESTRAL SPECIES	5	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Felidae	DUPLICATION
Felidae	DUPLICATION
Felidae	DUPLICATION
Felidae	ANCESTRAL SPECIES	4	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890.i.a.a #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890.i.a.a #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Tiger	MODERN SPECIES	446	SGCZ (ENSPTIG00000007722)	ENSPTIG00000006610 ##8	ENSPTIG00000005433	DLC1 (ENSPTIG00000002544) #8	TRMT9B (ENSPTIG00000001444) #9	LONRF1 (ENSPTIG00000022026) #10	PRAG1 (ENSPTIG00000021942) #11	MFHAS1 (ENSPTIG00000021899) #14	ERI1 (ENSPTIG00000021778) #15	PPP1R3B (ENSPTIG00000005382) #16	TNKS (ENSPTIG00000021233) #17	DUSP4 (ENSPTIG00000020987) #18	SARAF (ENSPTIG00000020500) #19	LEPROTL1 (ENSPTIG00000020373) #20	MBOAT4 (ENSPTIG00000019802) #21	DCTN6 (ENSPTIG00000018684) #22	RBPMS (ENSPTIG00000015964) #23	SMIM18 (ENSPTIG00000005316) #24	GTF2E2 (ENSPTIG00000015001) #25	GSR (ENSPTIG00000010109) #26	UBXN8 (ENSPTIG00000008126) #27	PPP2CB (ENSPTIG00000006186) #28	PURG (ENSPTIG00000000641) #30	WRN (ENSPTIG00000020609) #31	NRG1 (ENSPTIG00000015564) #32	FUT10 (ENSPTIG00000014430) #34	MAK16 (ENSPTIG00000014223) #35	TTI2 (ENSPTIG00000013872) #36	ADRA1A (ENSPTIG00000012913)	DPYSL2 (ENSPTIG00000009643)	PNMA2 (ENSPTIG00000004671)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890.i.a.a #22	ENSGT00940000159617 #23	ENSGT00940000155028.q.b.f	ENSGT00390000011749 #25	ENSGT00940000155429.b.e.b	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326.c #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36
lion	MODERN SPECIES	4	TRMT9B (ENSPLOG00000000856) #9	LONRF1 (ENSPLOG00000000889) #10	PRAG1 (ENSPLOG00000000939) #11	ENSPLOG00000000960	CLDN23 (ENSPLOG00000000978) #12	ENSPLOG00000000992	MFHAS1 (ENSPLOG00000001045) #14	ERI1 (ENSPLOG00000001091) #15	PPP1R3B (ENSPLOG00000001129) #16	TNKS (ENSPLOG00000001159) #17	DUSP4 (ENSPLOG00000001202) #18	ENSPLOG00000001224	SARAF (ENSPLOG00000001252) #19	LEPROTL1 (ENSPLOG00000001297) #20	MBOAT4 (ENSPLOG00000001327) #21	DCTN6 (ENSPLOG00000001347) #22	ENSPLOG00000001410 #23	GTF2E2 (ENSPLOG00000001470) #25	SMIM18 (ENSPLOG00000001479) #24	GSR (ENSPLOG00000001518) #26	ENSPLOG00000001604 #27	PPP2CB (ENSPLOG00000001655) #28	TEX15 (ENSPLOG00000001699) #29	PURG (ENSPLOG00000001734) #30	WRN (ENSPLOG00000001754) #31	NRG1 (ENSPLOG00000002181) #32	ENSPLOG00000002510	FUT10 (ENSPLOG00000002522) #34	MAK16 (ENSPLOG00000002547) #35	TTI2 (ENSPLOG00000002576) #36	ADRA1A (ENSPLOG00000002621)
leopard	MODERN SPECIES	49	ENSPPRG00000015179 ##8	ENSPPRG00000019279	DLC1 (ENSPPRG00000014514) #8	TRMT9B (ENSPPRG00000012143) #9	LONRF1 (ENSPPRG00000011958) #10	PRAG1 (ENSPPRG00000011236) #11	CLDN23 (ENSPPRG00000018870) #12	MFHAS1 (ENSPPRG00000010068) #14	ERI1 (ENSPPRG00000009881) #15	PPP1R3B (ENSPPRG00000018694) #16	TNKS (ENSPPRG00000009656) #17	DUSP4 (ENSPPRG00000009209) #18	SARAF (ENSPPRG00000008259) #19	LEPROTL1 (ENSPPRG00000007710) #20	MBOAT4 (ENSPPRG00000007461) #21	ENSPPRG00000007370 #22	ENSPPRG00000007165	RBPMS (ENSPPRG00000004836) #23	ENSPPRG00000003227	GTF2E2 (ENSPPRG00000002887) #25	ENSPPRG00000002520	SMIM18 (ENSPPRG00000018157) #24	GSR (ENSPPRG00000000594) #26	UBXN8 (ENSPPRG00000019246) #27	PPP2CB (ENSPPRG00000015210) #28	TEX15 (ENSPPRG00000013895) #29	PURG (ENSPPRG00000011836) #30	WRN (ENSPPRG00000010928) #31	ENSPPRG00000009523	ENSPPRG00000009398	ENSPPRG00000009260
Cat	MODERN SPECIES	241	COMMD9 (ENSFCAG00000038308)	LDLRAD3 (ENSFCAG00000040060)	TRIM44 (ENSFCAG00000025850)	FJX1 (ENSFCAG00000046575)	PAMR1 (ENSFCAG00000005892)	SLC1A2 (ENSFCAG00000005890)	CD44 (ENSFCAG00000005887)	PDHX (ENSFCAG00000023884)	APIP (ENSFCAG00000002557)	EHF (ENSFCAG00000036037)	ELF5 (ENSFCAG00000022294)	CAT (ENSFCAG00000002030)	ABTB2 (ENSFCAG00000002029)	NAT10 (ENSFCAG00000002028)	CAPRIN1 (ENSFCAG00000030411)	ENSFCAG00000013842 #22	LMO2 (ENSFCAG00000036087)	FBXO3 (ENSFCAG00000010140)	ENSFCAG00000053575	CD1H11orf91 (ENSFCAG00000029946)	KIAA1549L (ENSFCAG00000010134)	ENSFCAG00000048892	HIPK3 (ENSFCAG00000023639)	ENSFCAG00000045275	CSTF3 (ENSFCAG00000030711)	TCP11L1 (ENSFCAG00000026555)	DEPDC7 (ENSFCAG00000032004)	QSER1 (ENSFCAG00000015204)	PRRG4 (ENSFCAG00000015202)	CCDC73 (ENSFCAG00000025569)	EIF3M (ENSFCAG00000000310)
Felidae	ANCESTRAL SPECIES																	ENSGT00390000017890.i.a.b #22
Cat	MODERN SPECIES	235	DLC1 (ENSFCAG00000015432) #8	TRMT9B (ENSFCAG00000041381) #9	LONRF1 (ENSFCAG00000029044) #10	PRAG1 (ENSFCAG00000005333) #11	CLDN23 (ENSFCAG00000042422) #12	ENSFCAG00000049353 #13	MFHAS1 (ENSFCAG00000022083) #14	ERI1 (ENSFCAG00000029808) #15	PPP1R3B (ENSFCAG00000040845) #16	TNKS (ENSFCAG00000008484) #17	DUSP4 (ENSFCAG00000028649) #18	ENSFCAG00000032179	SARAF (ENSFCAG00000037236) #19	LEPROTL1 (ENSFCAG00000035274) #20	MBOAT4 (ENSFCAG00000000132) #21	ENSFCAG00000000133 #22	ENSFCAG00000029687	RBPMS (ENSFCAG00000025639) #23	ENSFCAG00000030925	GTF2E2 (ENSFCAG00000023767) #25	SMIM18 (ENSFCAG00000030603) #24	GSR (ENSFCAG00000001476) #26	UBXN8 (ENSFCAG00000026418) #27	PPP2CB (ENSFCAG00000025139) #28	TEX15 (ENSFCAG00000041903) #29	PURG (ENSFCAG00000014218) #30	WRN (ENSFCAG00000024759) #31	NRG1 (ENSFCAG00000024086) #32	FUT10 (ENSFCAG00000003845) #34	MAK16 (ENSFCAG00000033972) #35	TTI2 (ENSFCAG00000015300) #36
Felidae	ANCESTRAL SPECIES																	ENSGT00390000017890.i.b #22
Panthera	ANCESTRAL SPECIES																	ENSGT00390000017890.i.b #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00390000017890.i.b #22
leopard	MODERN SPECIES	17	AAMDC (ENSPPRG00000008947)	INTS4 (ENSPPRG00000008445)	KCTD14 (ENSPPRG00000017268)	THRSP (ENSPPRG00000017258)	ENSPPRG00000007066	ALG8 (ENSPPRG00000005691)	KCTD21 (ENSPPRG00000017214)	ENSPPRG00000017162	USP35 (ENSPPRG00000004495)	GAB2 (ENSPPRG00000004004)	ENSPPRG00000003277	NARS2 (ENSPPRG00000001838)	TENM4 (ENSPPRG00000001206)	ENSPPRG00000022753	ENSPPRG00000022928	ENSPPRG00000023069 #22	FAM181B (ENSPPRG00000016990)	ENSPPRG00000016977	PRCP (ENSPPRG00000023423)	ENSPPRG00000023558	RAB30 (ENSPPRG00000023881)	PCF11 (ENSPPRG00000024270)	ANKRD42 (ENSPPRG00000024421)	CCDC90B (ENSPPRG00000013976)	ENSPPRG00000012171	ENSPPRG00000010067	TMEM126B (ENSPPRG00000005529)	ENSPPRG00000005013	ENSPPRG00000004597	CCDC89 (ENSPPRG00000016516)	ENSPPRG00000004036
Felidae	ANCESTRAL SPECIES																	ENSGT00390000017890.j #22
Panthera	ANCESTRAL SPECIES	138																ENSGT00390000017890.j #22	ENSGT00940000160559
Panthera_a	ANCESTRAL SPECIES	155																ENSGT00390000017890.j #22	ENSGT00940000160559
leopard	DUPLICATION
leopard	MODERN SPECIES	465																ENSPPRG00000022826 #22
leopard	MODERN SPECIES	291															ENSPPRG00000013422	ENSPPRG00000013351 #22	ENSPPRG00000013313
Caniformia	ANCESTRAL SPECIES	28	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Canidae	ANCESTRAL SPECIES	53	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22
Canis_lupus	ANCESTRAL SPECIES	29	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00870000136506.r.a.a	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37
Dog	MODERN SPECIES	7	ENSCAFG00845014043 #7	DLC1 (ENSCAFG00845013729) #8	TRMT9B (ENSCAFG00845013532) #9	LONRF1 (ENSCAFG00845013406) #10	ENSCAFG00845013290 #11	ENSCAFG00845013145 #13	MFHAS1 (ENSCAFG00845013064) #14	ERI1 (ENSCAFG00845013010) #15	PPP1R3B (ENSCAFG00845012973) #16	TNKS (ENSCAFG00845012924) #17	ENSCAFG00845012846 #18	ENSCAFG00845012826	SARAF (ENSCAFG00845012775) #19	LEPROTL1 (ENSCAFG00845012668) #20	MBOAT4 (ENSCAFG00845012598) #21	DCTN6 (ENSCAFG00845012541) #22	ENSCAFG00845012510	ENSCAFG00845012337 #23	SMIM18 (ENSCAFG00845016754) #24	GTF2E2 (ENSCAFG00845016703) #25	GSR (ENSCAFG00845016475) #26	UBXN8 (ENSCAFG00845016193) #27	PPP2CB (ENSCAFG00845016054) #28	TEX15 (ENSCAFG00845015902) #29	PURG (ENSCAFG00845015827) #30	WRN (ENSCAFG00845015638) #31	ENSCAFG00845015544	ENSCAFG00845015519	NRG1 (ENSCAFG00845014867) #32	ENSCAFG00845014651	FUT10 (ENSCAFG00845014634) #34
Dingo	MODERN SPECIES	77	ENSCAFG00020000723 #7	ENSCAFG00020000735 ##8	DLC1 (ENSCAFG00020000757) #8	TRMT9B (ENSCAFG00020000857) #9	LONRF1 (ENSCAFG00020000871) #10	PRAG1 (ENSCAFG00020000884) #11	ENSCAFG00020000904 #13	MFHAS1 (ENSCAFG00020000927) #14	ERI1 (ENSCAFG00020000937) #15	ENSCAFG00020000951 #16	ENSCAFG00020000963 #17	DUSP4 (ENSCAFG00020000979) #18	SARAF (ENSCAFG00020000989) #19	LEPROTL1 (ENSCAFG00020000999) #20	MBOAT4 (ENSCAFG00020001007) #21	DCTN6 (ENSCAFG00020001017) #22	ENSCAFG00020001026	RBPMS (ENSCAFG00020001031) #23	GTF2E2 (ENSCAFG00020001042) #25	SMIM18 (ENSCAFG00020001050) #24	GSR (ENSCAFG00020001065) #26	UBXN8 (ENSCAFG00020001149) #27	PPP2CB (ENSCAFG00020001175) #28	ENSCAFG00020001187	TEX15 (ENSCAFG00020001193) #29	PURG (ENSCAFG00020001221) #30	WRN (ENSCAFG00020001236) #31	ENSCAFG00020001282	ENSCAFG00020001290	ENSCAFG00020001295 #32	ENSCAFG00020001304 #32
Red fox	MODERN SPECIES	14	SGCZ (ENSVVUG00000019575)	ENSVVUG00000019595 #7	DLC1 (ENSVVUG00000019609) #8	TRMT9B (ENSVVUG00000019651) #9	LONRF1 (ENSVVUG00000019657) #10	PRAG1 (ENSVVUG00000019675) #11	ENSVVUG00000019682	MFHAS1 (ENSVVUG00000019721) #14	ERI1 (ENSVVUG00000019723) #15	PPP1R3B (ENSVVUG00000019726) #16	TNKS (ENSVVUG00000019734) #17	DUSP4 (ENSVVUG00000019739) #18	SARAF (ENSVVUG00000019747) #19	LEPROTL1 (ENSVVUG00000019752) #20	MBOAT4 (ENSVVUG00000019758) #21	DCTN6 (ENSVVUG00000019760) #22	ENSVVUG00000019765	ENSVVUG00000019767	RBPMS (ENSVVUG00000019770) #23	GTF2E2 (ENSVVUG00000019776) #25	SMIM18 (ENSVVUG00000019780) #24	GSR (ENSVVUG00000019790) #26	UBXN8 (ENSVVUG00000019832) #27	PPP2CB (ENSVVUG00000019835) #28	TEX15 (ENSVVUG00000019841) #29	PURG (ENSVVUG00000019861) #30	WRN (ENSVVUG00000019867) #31	ENSVVUG00000019884	NRG1 (ENSVVUG00000019905) #32	FUT10 (ENSVVUG00000019925) #34	MAK16 (ENSVVUG00000019933) #35
Caniformia_b	ANCESTRAL SPECIES	30	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Mustelinae	ANCESTRAL SPECIES	84	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000157278	ENSGT00530000063727.B	ENSGT00940000159678	ENSGT00940000157056	ENSGT00940000156741	ENSGT01100000263660	ENSGT00390000010980	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00390000013490	ENSGT00950000182856.a.a.b	ENSGT00390000010356
American mink	MODERN SPECIES	30	C8orf48 (ENSNVIG00000006999) #7	DLC1 (ENSNVIG00000006868) #8	TRMT9B (ENSNVIG00000006837) #9	ENSNVIG00000006826	LONRF1 (ENSNVIG00000006805) #10	PRAG1 (ENSNVIG00000006792) #11	MFHAS1 (ENSNVIG00000006769) #14	ERI1 (ENSNVIG00000006752) #15	PPR3B (ENSNVIG00000006738) #16	ENSNVIG00000006731	TNKS (ENSNVIG00000006675) #17	DUSP4 (ENSNVIG00000006667) #18	SARAF (ENSNVIG00000006647) #19	LEPROTL1 (ENSNVIG00000006579) #20	MBOAT4 (ENSNVIG00000006563) #21	DCTN6 (ENSNVIG00000006540) #22	ENSNVIG00000006524	ENSNVIG00000006516	RBPMS (ENSNVIG00000006491) #23	SMIM18 (ENSNVIG00000006483) #24	GTF2E2 (ENSNVIG00000006478) #25	CYP4V2 (ENSNVIG00000006460)	ENSNVIG00000006344	TLR3 (ENSNVIG00000006317)	ENSNVIG00000006303	SORBS2 (ENSNVIG00000005995)	PDLI3 (ENSNVIG00000005921)	ENSNVIG00000005900	CD047 (ENSNVIG00000005884)	UFSP2 (ENSNVIG00000005849)	ANKRD37 (ENSNVIG00000005829)
Ferret	DUPLICATION
Ferret	MODERN SPECIES	221	ENSMPUG00000019945	ENSMPUG00000011431 #13	ENSMPUG00000011422	MFHAS1 (ENSMPUG00000011417) #14	ERI1 (ENSMPUG00000011413) #15	PPP1R3B (ENSMPUG00000019944) #16	ENSMPUG00000011410	ENSMPUG00000011408	ENSMPUG00000011405	ENSMPUG00000011400	TNKS (ENSMPUG00000011383) #17	DUSP4 (ENSMPUG00000011376) #18	SARAF (ENSMPUG00000011372) #19	LEPROTL1 (ENSMPUG00000011367) #20	MBOAT4 (ENSMPUG00000011353) #21	ENSMPUG00000011347 #22	ENSMPUG00000011345	RBPMS (ENSMPUG00000011314) #23	GTF2E2 (ENSMPUG00000011310) #25	CYP4V2 (ENSMPUG00000011302)	FAM149A (ENSMPUG00000011242)	TLR3 (ENSMPUG00000011236)	SORBS2 (ENSMPUG00000011226)	PDLIM3 (ENSMPUG00000011219)	ENSMPUG00000011213	C4orf47 (ENSMPUG00000011207)	UFSP2 (ENSMPUG00000011199)	ANKRD37 (ENSMPUG00000011195)	LRP2BP (ENSMPUG00000011166)	SNX25 (ENSMPUG00000011158)	CFAP97 (ENSMPUG00000011148)
Ferret	MODERN SPECIES	209															ENSMPUG00000018991	ENSMPUG00000014208 #22	ENSMPUG00000014207	ENSMPUG00000014205	ENSMPUG00000014203	ENSMPUG00000018983	BMP15 (ENSMPUG00000014202)	ENSMPUG00000014199	SHROOM4 (ENSMPUG00000014194)	DGKK (ENSMPUG00000014099)	CCNB3 (ENSMPUG00000014093)	AKAP4 (ENSMPUG00000014092)	CLCN5 (ENSMPUG00000014089)	USP27X (ENSMPUG00000014078)	PAGE4 (ENSMPUG00000014073)	ENSMPUG00000014069	PPP1R3F (ENSMPUG00000014063)
Ursidae	ANCESTRAL SPECIES	38	ENSGT00940000157146.b	ENSGT00390000008508 #7	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326.h #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	9	DLC1 (ENSAMEG00000007172) #8	C8orf48 (ENSAMEG00000019769) #7	ENSAMEG00000029087	ENSAMEG00000007166 #9	ENSAMEG00000007160 #10	ENSAMEG00000030052 #11	ENSAMEG00000027636 #12	MFHAS1 (ENSAMEG00000000508) #14	ERI1 (ENSAMEG00000016002) #15	PPP1R3B (ENSAMEG00000019964) #16	ENSAMEG00000005992 #17	ENSAMEG00000006062 #18	ENSAMEG00000001483 #19	ENSAMEG00000024146 #20	MBOAT4 (ENSAMEG00000001495) #21	ENSAMEG00000001497 #22	ENSAMEG00000019327	ENSAMEG00000001522 #23	ENSAMEG00000001537 #25	ENSAMEG00000031419	SMIM18 (ENSAMEG00000024577) #24	GSR (ENSAMEG00000001554) #26	UBXN8 (ENSAMEG00000001600) #27	PPP2CB (ENSAMEG00000028915) #28	TEX15 (ENSAMEG00000024323) #29	PURG (ENSAMEG00000019352) #30	WRN (ENSAMEG00000000475) #31	NRG1 (ENSAMEG00000014160) #32	FUT10 (ENSAMEG00000002880) #34	MAK16 (ENSAMEG00000002852) #35	TTI2 (ENSAMEG00000002835) #36
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	2274																ENSAMEG00000029902 #22
Giant Panda	MODERN SPECIES	43																ENSAMEG00000026325 #22
Ursus	ANCESTRAL SPECIES	212									ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31
American black bear	DUPLICATION
American black bear	MODERN SPECIES	4201														SARAF (ENSUAMG00000025145) #19	LEPROTL1 (ENSUAMG00000025143) #20	ENSUAMG00000025142 #22	ENSUAMG00000025140
American black bear	MODERN SPECIES	6947																ENSUAMG00000014425 #22
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	135									ERI1 (ENSUMAG00000008899) #15	PPP1R3B (ENSUMAG00000008891) #16	ENSUMAG00000008885	TNKS (ENSUMAG00000007498) #17	SARAF (ENSUMAG00000007371) #19	LEPROTL1 (ENSUMAG00000007357) #20	MBOAT4 (ENSUMAG00000007356) #21	ENSUMAG00000007352 #22	RBPMS (ENSUMAG00000007347) #23	SMIM18 (ENSUMAG00000007344) #24	GTF2E2 (ENSUMAG00000007340) #25	GSR (ENSUMAG00000007246) #26	UBXN8 (ENSUMAG00000007225) #27	PPP2CB (ENSUMAG00000007221) #28	TEX15 (ENSUMAG00000007199) #29	PURG (ENSUMAG00000007192) #30	WRN (ENSUMAG00000007159) #31
Polar bear	MODERN SPECIES	254	ENSUMAG00000009416	ZPBP (ENSUMAG00000009391)	ENSUMAG00000009388	IKZF1 (ENSUMAG00000009376)	FIGNL1 (ENSUMAG00000009371)	DDC (ENSUMAG00000009330)	GRB10 (ENSUMAG00000009311)	ENSUMAG00000009305	COBL (ENSUMAG00000009297)	ENSUMAG00000009282	VSTM2A (ENSUMAG00000009257)	ENSUMAG00000009242	EGFR (ENSUMAG00000008777)	LANCL2 (ENSUMAG00000008705)	VOPP1 (ENSUMAG00000008677)	ENSUMAG00000008669 #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000017890 #22
Hedgehog	MODERN SPECIES	14936																DCTN6 (ENSEEUG00000008292) #22
Common shrew	MODERN SPECIES	11249																DCTN6 (ENSSARG00000013141) #22
Atlantogenata	ANCESTRAL SPECIES	23	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000162544 #13	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107	ENSGT00950000182815.a.a.b
Xenarthra	ANCESTRAL SPECIES	193													ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3682															PPP2R3A (ENSDNOG00000006632)	ENSDNOG00000039427 #22	MSL2 (ENSDNOG00000040411)	PCCB (ENSDNOG00000003013)	STAG1 (ENSDNOG00000005851)	SLC35G2 (ENSDNOG00000003201)	NCK1 (ENSDNOG00000019626)	IL20RB (ENSDNOG00000014317)
Armadillo	MODERN SPECIES	3346													SARAF (ENSDNOG00000049485) #19	LEPROTL1 (ENSDNOG00000014538) #20	MBOAT4 (ENSDNOG00000036278) #21	ENSDNOG00000037495 #22	RBPMS (ENSDNOG00000008126) #23	GTF2E2 (ENSDNOG00000037079) #25	ENSDNOG00000047639	SMIM18 (ENSDNOG00000038031) #24	ENSDNOG00000030790	GSR (ENSDNOG00000000545) #26	ENSDNOG00000016216 #27	PPP2CB (ENSDNOG00000010906) #28	PURG (ENSDNOG00000023747) #30	WRN (ENSDNOG00000008481) #31	NRG1 (ENSDNOG00000012161) #32	FUT10 (ENSDNOG00000042136) #34	MAK16 (ENSDNOG00000008424) #35	TTI2 (ENSDNOG00000046897) #36	RNF122 (ENSDNOG00000041037) #37
Sloth	MODERN SPECIES	625																DCTN6 (ENSCHOG00000002554) #22
Afrotheria	ANCESTRAL SPECIES	19	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107	ENSGT00950000182815.a.a.b
Tenrec	MODERN SPECIES	16547															LEPROTL1 (ENSETEG00000012308) #20	DCTN6 (ENSETEG00000012307) #22
Afrotheria_a	ANCESTRAL SPECIES	18	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b #8	ENSGT00940000160373 #9	ENSGT00440000033329.a.a.b #10	ENSGT00940000157066 #11	ENSGT00390000006975 #12	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00940000160287 #34	ENSGT00390000012859 #35	ENSGT00390000003878 #36	ENSGT00940000159152.d #37	ENSGT00940000158107	ENSGT00950000182815.a.a.b
Hyrax	MODERN SPECIES	11954															MBOAT4 (ENSPCAG00000009127) #21	DCTN6 (ENSPCAG00000009097) #22
Elephant	MODERN SPECIES	225	ENSLAFG00000028292 ##8	DLC1 (ENSLAFG00000003196) #8	TRMT9B (ENSLAFG00000001157) #9	ENSLAFG00000027189	LONRF1 (ENSLAFG00000015874) #10	PRAG1 (ENSLAFG00000003996) #11	CLDN23 (ENSLAFG00000031214) #12	MFHAS1 (ENSLAFG00000008889) #14	ERI1 (ENSLAFG00000004970) #15	PPP1R3B (ENSLAFG00000008793) #16	TNKS (ENSLAFG00000004786) #17	DUSP4 (ENSLAFG00000012618) #18	SARAF (ENSLAFG00000010509) #19	LEPROTL1 (ENSLAFG00000017415) #20	MBOAT4 (ENSLAFG00000017322) #21	DCTN6 (ENSLAFG00000017860) #22	RBPMS (ENSLAFG00000000209) #23	GTF2E2 (ENSLAFG00000005176) #25	UBXN8 (ENSLAFG00000006653) #27	ENSLAFG00000029627 #28	TEX15 (ENSLAFG00000018110) #29	PURG (ENSLAFG00000031834) #30	WRN (ENSLAFG00000004434) #31	NRG1 (ENSLAFG00000016872) #32	FUT10 (ENSLAFG00000014889) #34	MAK16 (ENSLAFG00000026404) #35	TTI2 (ENSLAFG00000027910) #36	RNF122 (ENSLAFG00000000678) #37	DUSP26 (ENSLAFG00000000679)	UNC5D (ENSLAFG00000004948)	KCNU1 (ENSLAFG00000020552)
Marsupialia	ANCESTRAL SPECIES	21	ENSGT00950000183026.A.a.a	ENSGT01030000235147	ENSGT00940000167384	ENSGT00940000160647	ENSGT00390000006641	ENSGT00530000063548.B	ENSGT00390000004552	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00390000006975 #12	ENSGT00940000160287 #34	ENSGT00940000165291	ENSGT00940000158131	ENSGT00550000075003
Opossum	MODERN SPECIES	4	ENSMODG00000019046	ENSMODG00000037485	FGL1 (ENSMODG00000019044)	PCM1 (ENSMODG00000019039)	ASAH1 (ENSMODG00000019036)	ENSMODG00000037934	MFHAS1 (ENSMODG00000019027) #14	ERI1 (ENSMODG00000040174) #15	PPP1R3B (ENSMODG00000019023) #16	TNKS (ENSMODG00000019017) #17	ENSMODG00000050106 #18	ENSMODG00000019009 #18	ENSMODG00000019013 #19	LEPROTL1 (ENSMODG00000038627) #20	MBOAT4 (ENSMODG00000043690) #21	ENSMODG00000019010 #22	ENSMODG00000019008	ENSMODG00000019006 #23	SMIM18 (ENSMODG00000046929) #24	GTF2E2 (ENSMODG00000019005) #25	GSR (ENSMODG00000019004) #26	ENSMODG00000019003 #27	PPP2CB (ENSMODG00000019001) #28	ENSMODG00000047912 #29	PURG (ENSMODG00000018998) #30	ENSMODG00000040363	WRN (ENSMODG00000018997) #31	ENSMODG00000038176	ENSMODG00000018992	NRG1 (ENSMODG00000018991) #32	ENSMODG00000018986
Marsupialia_b	ANCESTRAL SPECIES	22	ENSGT00950000183026.A.a.a	ENSGT01030000235147	ENSGT00940000167384	ENSGT00940000160647	ENSGT00390000006641	ENSGT00530000063548.B	ENSGT00390000004552	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00950000182890.D.c.b.a.b.b.b.c.a.b.a.a.a.b.a.a.b.a	ENSGT00390000006975 #12	ENSGT00940000160287 #34	ENSGT00940000165291	ENSGT00940000158131
Tasmanian devil	MODERN SPECIES	5	PDGFRL (ENSSHAG00000009767)	ENSSHAG00000028275	ENSSHAG00000024268	FGL1 (ENSSHAG00000008385)	PCM1 (ENSSHAG00000007227)	ENSSHAG00000006550	ENSSHAG00000005886	ENSSHAG00000004685 #14	ERI1 (ENSSHAG00000002550) #15	PPP1R3B (ENSSHAG00000023551) #16	ENSSHAG00000012922 #17	ENSSHAG00000030638 #18	ENSSHAG00000012045 #19	LEPROTL1 (ENSSHAG00000011880) #20	MBOAT4 (ENSSHAG00000021150) #21	DCTN6 (ENSSHAG00000011698) #22	ENSSHAG00000030113 #23	SMIM18 (ENSSHAG00000029469) #24	GTF2E2 (ENSSHAG00000009797) #25	GSR (ENSSHAG00000021958) #26	ENSSHAG00000008767 #27	PPP2CB (ENSSHAG00000008510) #28	ENSSHAG00000027177 #29	PURG (ENSSHAG00000027401) #30	WRN (ENSSHAG00000005577) #31	ENSSHAG00000016586 #32	ENSSHAG00000015329	ENSSHAG00000029943	ENSSHAG00000022088	METTL14 (ENSSHAG00000014237)	SEC24D (ENSSHAG00000014053)
Diprotodontia	ANCESTRAL SPECIES	25	ENSGT00950000183026.A.a.a	ENSGT01030000235147	ENSGT00940000167384	ENSGT00940000160647	ENSGT00390000006641	ENSGT00530000063548.B	ENSGT00390000004552	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00950000182890.D.c.b.a.b.b.b.c.a.b.a.a.a.b.a.a.b.a	ENSGT00390000006975 #12	ENSGT00940000160287 #34	ENSGT00940000165291	ENSGT00940000158131
Diprotodontia_a	ANCESTRAL SPECIES	26	ENSGT00950000183026.A.a.a	ENSGT01030000235147	ENSGT00940000167384	ENSGT00940000160647	ENSGT00390000006641	ENSGT00530000063548.B	ENSGT00390000004552	ENSGT00940000158928 #14	ENSGT00530000063205.B #15	ENSGT00940000159475 #16	ENSGT00940000156161.B #17	ENSGT00940000159066 #18	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #30	ENSGT00940000159168 #31	ENSGT00940000157326 #32	ENSGT00950000182890.D.c.b.a.b.b.b.c.a.b.a.a.a.b.a.a.b.a	ENSGT00390000006975 #12	ENSGT00940000160287 #34	ENSGT00940000165291	ENSGT00940000158131
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	364																ENSVURG00010021967 #22
Common wonbat	MODERN SPECIES	362																ENSVURG00010021962 #22
koala	DUPLICATION
koala	MODERN SPECIES	645																ENSPCIG00000002984 #22
koala	MODERN SPECIES	128												ENSPCIG00000023363	ENSPCIG00000005100 #19	LEPROTL1 (ENSPCIG00000022561) #20	MBOAT4 (ENSPCIG00000022563) #21	ENSPCIG00000022565 #22	ENSPCIG00000019298 #23	ENSPCIG00000019307	ENSPCIG00000002084 #24	GTF2E2 (ENSPCIG00000019303) #25	ENSPCIG00000001859 #26	ENSPCIG00000016069 #27	PPP2CB (ENSPCIG00000016066) #28	ENSPCIG00000016064 #29	PURG (ENSPCIG00000026703) #30	WRN (ENSPCIG00000020146) #31	NRG1 (ENSPCIG00000011488) #32	ENSPCIG00000034056	ENSPCIG00000020566	CLDN23 (ENSPCIG00000020563) #12	FUT10 (ENSPCIG00000020559) #34
Platypus	MODERN SPECIES	1	ENSOANG00000047452	HOPX (ENSOANG00000036960)	ENSOANG00000031517	ENSOANG00000044021	ENSOANG00000036201	ENSOANG00000008562	ENSOANG00000040268 #11	CLDN23 (ENSOANG00000048929) #12	MFHAS1 (ENSOANG00000037192) #14	ERI1 (ENSOANG00000042020) #15	PPP1R3B (ENSOANG00000015378) #16	TNKS (ENSOANG00000008567) #17	DUSP4 (ENSOANG00000043119) #18	SARAF (ENSOANG00000019731) #19	ENSOANG00000043769	DCTN6 (ENSOANG00000044713) #22	ENSOANG00000038265 #23	SMIM18 (ENSOANG00000046454) #24	GTF2E2 (ENSOANG00000015808) #25	GSR (ENSOANG00000044221) #26	ENSOANG00000050653 #27	PPP2CB (ENSOANG00000020600) #28	ENSOANG00000022039	ENSOANG00000007797	ENSOANG00000039953
Sauria	ANCESTRAL SPECIES	41	ENSGT00390000013264	ENSGT00940000159397	ENSGT00940000154630.b	ENSGT00390000017143	ENSGT01030000235125	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000164512	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26
Lepidosauria	ANCESTRAL SPECIES	99	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00940000154630.b	ENSGT00390000017143	ENSGT01030000235125	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160277
Episquamata	ANCESTRAL SPECIES	6	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00940000154630.b	ENSGT00390000017143	ENSGT01030000235125	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160277	ENSGT00940000155244	ENSGT00940000155007	ENSGT00940000153558.b	ENSGT00940000156806	ENSGT00940000162158	ENSGT00390000013344
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00390000017143	ENSGT01030000235125	ENSGT01030000234531.C	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160277	ENSGT00940000155244	ENSGT00940000155007	ENSGT00940000153558.b	ENSGT00940000156806	ENSGT00940000162158	ENSGT00390000013344
Elapidae	ANCESTRAL SPECIES	7	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00390000017143	ENSGT01030000235125	ENSGT01030000234531.C	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066.f #11	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160277	ENSGT00940000155244	ENSGT00940000155007	ENSGT00940000153558.b	ENSGT00940000156806	ENSGT00940000162158	ENSGT00390000013344
Indian cobra	MODERN SPECIES	1	NOA1 (ENSNNAG00000012427)	ENSNNAG00000012443	SARAF (ENSNNAG00000012461) #19	LEPROTL1 (ENSNNAG00000012476) #20	SRP72 (ENSNNAG00000012530)	ARL9 (ENSNNAG00000012807)	HOPX (ENSNNAG00000012828)	LRRC14B (ENSNNAG00000012848)	DUSP4 (ENSNNAG00000012853) #18	TNKS (ENSNNAG00000012885) #17	PPP1R3B (ENSNNAG00000013254) #16	ERI1 (ENSNNAG00000013281) #15	MFHAS1 (ENSNNAG00000013373) #14	ENSNNAG00000013381	PRAG1 (ENSNNAG00000013413) #11	DCTN6 (ENSNNAG00000013448) #22	RBPMS (ENSNNAG00000013465) #23	GTF2E2 (ENSNNAG00000013490) #25	SMIM18 (ENSNNAG00000013511) #24	WRN (ENSNNAG00000013524) #31	PURG (ENSNNAG00000013661) #30	ENSNNAG00000013670 #29	PPP2CB (ENSNNAG00000013698) #28	GSR (ENSNNAG00000013720) #26	CST7 (ENSNNAG00000013744)	B4GALT1 (ENSNNAG00000013755)	SMU1 (ENSNNAG00000013774)	DNAJA1 (ENSNNAG00000013831)	APTX (ENSNNAG00000013852)	ACTL7A (ENSNNAG00000013863)	ELP1 (ENSNNAG00000013979)
Elapidae_a	ANCESTRAL SPECIES	49	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00390000017143	ENSGT01030000235125	ENSGT01030000234531.C	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066.f #11	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b.ib #28	ENSGT00940000156986 #26	ENSGT00940000160277	ENSGT00940000155244	ENSGT00940000155007	ENSGT00940000153558.b	ENSGT00940000156806	ENSGT00940000162158	ENSGT00390000013344
Acanthophiinae	ANCESTRAL SPECIES	49	ENSGT00940000155341.h	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00390000017143	ENSGT01030000235125	ENSGT01030000234531.C	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00390000006975 #12	ENSGT00940000157066.f #11	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b.ib #28	ENSGT00940000156986 #26	ENSGT00940000160277	ENSGT00940000155244	ENSGT00940000155007	ENSGT00940000153558.b	ENSGT00940000156806	ENSGT00940000162158	ENSGT00390000013344
Mainland tiger snake	MODERN SPECIES	48							LRRC14B (ENSNSUG00000015202)	DUSP4 (ENSNSUG00000015203) #18	TNKS (ENSNSUG00000015204) #17	PPP1R3B (ENSNSUG00000015206) #16	ERI1 (ENSNSUG00000015207) #15	MFHAS1 (ENSNSUG00000015280) #14	CLDN23 (ENSNSUG00000015281) #12	ENSNSUG00000015282 #11	PRAG1 (ENSNSUG00000015283) #11	DCTN6 (ENSNSUG00000015284) #22	RBPMS (ENSNSUG00000015285) #23	GTF2E2 (ENSNSUG00000015286) #25	SMIM18 (ENSNSUG00000015287) #24	WRN (ENSNSUG00000015288) #31	PURG (ENSNSUG00000015289) #30	ENSNSUG00000015290 #29	ENSNSUG00000015291 #28	GSR (ENSNSUG00000015292) #26	ENSNSUG00000015293	B4GALT1 (ENSNSUG00000015294)	SMU1 (ENSNSUG00000015295)	DNAJA1 (ENSNSUG00000015296)	APTX (ENSNSUG00000015297)	ACTL7A (ENSNSUG00000015303)	ELP1 (ENSNSUG00000015305)
Eastern brown snake	MODERN SPECIES	55	REST (ENSPTXG00000012025)	SARAF (ENSPTXG00000012026) #19	LEPROTL1 (ENSPTXG00000012027) #20	SRP72 (ENSPTXG00000012028)	ARL9 (ENSPTXG00000012030)	HOPX (ENSPTXG00000012031)	ENSPTXG00000012032	LRRC14B (ENSPTXG00000012033)	DUSP4 (ENSPTXG00000012034) #18	TNKS (ENSPTXG00000012035) #17	PPP1R3B (ENSPTXG00000012036) #16	ERI1 (ENSPTXG00000012037) #15	MFHAS1 (ENSPTXG00000012039) #14	CLDN23 (ENSPTXG00000012040) #12	PRAG1 (ENSPTXG00000012041) #11	DCTN6 (ENSPTXG00000012044) #22	RBPMS (ENSPTXG00000012046) #23	GTF2E2 (ENSPTXG00000012049) #25	SMIM18 (ENSPTXG00000012052) #24	WRN (ENSPTXG00000012058) #31	PURG (ENSPTXG00000012066) #30	ENSPTXG00000012068 #29	PPP2CB (ENSPTXG00000012070) #28	GSR (ENSPTXG00000012072) #26	ENSPTXG00000012074	B4GALT1 (ENSPTXG00000012076)	SMU1 (ENSPTXG00000012078)	DNAJA1 (ENSPTXG00000012081)	APTX (ENSPTXG00000012082)	ACTL7A (ENSPTXG00000012084)	ELP1 (ENSPTXG00000012085)
Blue-lipped sea krait	MODERN SPECIES	610															PRAG1 (ENSLLTG00000018261) #11	DCTN6 (ENSLLTG00000018259) #22
Lizard	MODERN SPECIES	871	ENSACAG00000038733 #20	SRP72 (ENSACAG00000002381)	ENSACAG00000002578	HOPX (ENSACAG00000002598)	ENSACAG00000002603	ENSACAG00000042142	ENSACAG00000043192 #18	TNKS (ENSACAG00000002619) #17	PPP1R3B (ENSACAG00000044943) #16	ERI1 (ENSACAG00000002863) #15	ENSACAG00000002928 #14	ENSACAG00000002945 #13	ENSACAG00000023382 #12	ENSACAG00000002960 #11	MBOAT4 (ENSACAG00000002975) #21	DCTN6 (ENSACAG00000002976) #22	RBPMS (ENSACAG00000003012) #23	SMIM18 (ENSACAG00000039087) #24	GTF2E2 (ENSACAG00000003080) #25	WRN (ENSACAG00000003109) #31	PURG (ENSACAG00000003215) #30	ENSACAG00000003236 #29	PPP2CB (ENSACAG00000003237) #28	ENSACAG00000003289 #26	B4GALT1 (ENSACAG00000003414)	SMU1 (ENSACAG00000003444)	DNAJA1 (ENSACAG00000003517)	APTX (ENSACAG00000003581)	ENSACAG00000003601	ENSACAG00000043325	ENSACAG00000003603
Laterata	ANCESTRAL SPECIES	7	ENSGT00390000006503.b #20	ENSGT00390000013264	ENSGT00940000159397	ENSGT00940000154630.b	ENSGT00390000017143	ENSGT01030000235125.b	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000164512	ENSGT00390000006975 #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160277	ENSGT00940000155244	ENSGT00940000155007	ENSGT00940000153558.b	ENSGT00940000156806	ENSGT00940000162158	ENSGT00390000013344
Common wall lizard	MODERN SPECIES	8	NOA1 (ENSPMRG00000018396)	REST (ENSPMRG00000018387)	SARAF (ENSPMRG00000018380) #19	LEPROTL1 (ENSPMRG00000018373) #20	SRP72 (ENSPMRG00000018358)	ARL9 (ENSPMRG00000018351)	HOPX (ENSPMRG00000018345)	ENSPMRG00000018340	DUSP4 (ENSPMRG00000018334) #18	TNKS (ENSPMRG00000018287) #17	PPP1R3B (ENSPMRG00000018280) #16	MFHAS1 (ENSPMRG00000018275) #14	CLDN23 (ENSPMRG00000021935) #12	PRAG1 (ENSPMRG00000021917) #11	MBOAT4 (ENSPMRG00000021902) #21	DCTN6 (ENSPMRG00000021890) #22	ENSPMRG00000021888	RBPMS (ENSPMRG00000021878) #23	SMIM18 (ENSPMRG00000021876) #24	GTF2E2 (ENSPMRG00000021872) #25	WRN (ENSPMRG00000021798) #31	PURG (ENSPMRG00000021771) #30	ENSPMRG00000021764 #29	PPP2CB (ENSPMRG00000021756) #28	ENSPMRG00000021746 #26	CST7 (ENSPMRG00000021743)	TMOD1 (ENSPMRG00000021731)	TSTD2 (ENSPMRG00000021727)	NCBP1 (ENSPMRG00000021685)	XPA (ENSPMRG00000021668)	FOXE1 (ENSPMRG00000021665)
Argentine black and white tegu	MODERN SPECIES	99												ENSSMRG00000018670	CLDN23 (ENSSMRG00000018672) #12	PRAG1 (ENSSMRG00000018675) #11	MBOAT4 (ENSSMRG00000018676) #21	DCTN6 (ENSSMRG00000018677) #22	RBPMS (ENSSMRG00000018678) #23	GTF2E2 (ENSSMRG00000018679) #25	SMIM18 (ENSSMRG00000018680) #24	WRN (ENSSMRG00000018682) #31	PURG (ENSSMRG00000018686) #30	ENSSMRG00000018687 #29	PPP2CB (ENSSMRG00000018689) #28	GSR (ENSSMRG00000018691) #26	ENSSMRG00000018692	B4GALT1 (ENSSMRG00000018694)	SMU1 (ENSSMRG00000018695)	GAK (ENSSMRG00000018696)	PIGG (ENSSMRG00000018698)	ENSSMRG00000018700	DNAH6 (ENSSMRG00000018702)
tuatara	MODERN SPECIES	476													CLDN23 (ENSSPUG00000017484) #12	PRAG1 (ENSSPUG00000017497) #11	MBOAT4 (ENSSPUG00000017512) #21	DCTN6 (ENSSPUG00000017517) #22	RBPMS (ENSSPUG00000017525) #23	GTF2E2 (ENSSPUG00000017532) #25	SMIM18 (ENSSPUG00000017539) #24	ENSSPUG00000017545	ENSSPUG00000017560 #31	ENSSPUG00000017579 #31	PURG (ENSSPUG00000017585) #30
Archelosauria	ANCESTRAL SPECIES	41	ENSGT00390000013264	ENSGT00940000159397	ENSGT00940000154630.b	ENSGT00390000017143	ENSGT01030000235125	ENSGT00940000159066 #18	ENSGT00940000156161.B #17	ENSGT00940000159475 #16	ENSGT00530000063205.B #15	ENSGT00940000158928 #14	ENSGT00940000164512	ENSGT00940000162544 #13	ENSGT00390000006975 #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00940000160368	ENSGT00900000143472	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000164512	ENSGT00940000162544 #13	ENSGT00390000006975.a #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a	ENSGT00390000004945	ENSGT00390000000436	ENSGT00390000014879.c.b
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b.c	ENSGT00940000163012	ENSGT00960000192150	ENSGT00440000039287	ENSGT00940000162661	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a	ENSGT00390000004945	ENSGT00390000000436	ENSGT00390000014879.c.b
Emydidae	ANCESTRAL SPECIES	27	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00940000160368	ENSGT00900000143472	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000162544 #13	ENSGT00390000006975.a #12	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a	ENSGT00390000004945	ENSGT00390000000436	ENSGT00390000014879.c.b
Three-toed box turtle	MODERN SPECIES	63	RASSF6 (ENSTMTG00000006422)	ENSTMTG00000006447	MTHFD2L (ENSTMTG00000006460)	EPGN (ENSTMTG00000006486)	EREG (ENSTMTG00000006501)	AREG (ENSTMTG00000006509)	BTC (ENSTMTG00000006526)	RCHY1 (ENSTMTG00000006548)	THAP6 (ENSTMTG00000006566)	CDKL2 (ENSTMTG00000006580)	G3BP2 (ENSTMTG00000006616)	USO1 (ENSTMTG00000006654)	ENSTMTG00000006701 #13	ENSTMTG00000006732 #12	PRAG1 (ENSTMTG00000006738) #11	DCTN6 (ENSTMTG00000006754) #22	RBPMS (ENSTMTG00000006835) #23	GTF2E2 (ENSTMTG00000006855) #25	SMIM18 (ENSTMTG00000006879) #24	WRN (ENSTMTG00000006953) #31	PURG (ENSTMTG00000007785) #30	TEX15 (ENSTMTG00000007794) #29	PPP2CB (ENSTMTG00000007804) #28	GSR (ENSTMTG00000007827) #26	SH2D4A (ENSTMTG00000007842)	CSGALNACT1 (ENSTMTG00000007858)	INTS10 (ENSTMTG00000007876)	HGSNAT (ENSTMTG00000007958)	SMIM19 (ENSTMTG00000008095)	SLC20A2 (ENSTMTG00000008107)	ENSTMTG00000008133
painted turtle	MODERN SPECIES	857	EPGN (ENSCPBG00000013502)	EREG (ENSCPBG00000013497)	AREG (ENSCPBG00000013495)	BTC (ENSCPBG00000013493)	PARM1 (ENSCPBG00000013492)	RCHY1 (ENSCPBG00000013489)	THAP6 (ENSCPBG00000013486)	CDKL2 (ENSCPBG00000013482)	ENSCPBG00000013478	G3BP2 (ENSCPBG00000013475)	USO1 (ENSCPBG00000013457)	ENSCPBG00000013448 #13	CLDN23 (ENSCPBG00000013447) #12	PRAG1 (ENSCPBG00000013445) #11	MBOAT4 (ENSCPBG00000013442) #21	DCTN6 (ENSCPBG00000013440) #22	RBPMS (ENSCPBG00000013437) #23	SMIM18 (ENSCPBG00000013433) #24	GTF2E2 (ENSCPBG00000013431) #25	WRN (ENSCPBG00000013421) #31	PURG (ENSCPBG00000013416) #30	TEX15 (ENSCPBG00000013412) #29	PPP2CB (ENSCPBG00000013403) #28	GSR (ENSCPBG00000013398) #26	SH2D4A (ENSCPBG00000013395)	CSGALNACT1 (ENSCPBG00000013387)	INTS10 (ENSCPBG00000013376)	HGSNAT (ENSCPBG00000013370)	POMK (ENSCPBG00000013368)	SMIM19 (ENSCPBG00000013366)	SLC20A2 (ENSCPBG00000013361)
Testudinidae	ANCESTRAL SPECIES	20	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b.c	ENSGT00940000163012	ENSGT00960000192150	ENSGT00440000039287	ENSGT00940000162661	ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00390000006260 #29	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a	ENSGT00390000004945	ENSGT00390000000436	ENSGT00390000014879.c.b
Abingdon island giant tortoise	MODERN SPECIES	2709														PRAG1 (ENSCABG00000014455) #11	MBOAT4 (ENSCABG00000014456) #21	DCTN6 (ENSCABG00000014458) #22	RBPMS (ENSCABG00000014468) #23	GTF2E2 (ENSCABG00000014471) #25	SMIM18 (ENSCABG00000014473) #24	WRN (ENSCABG00000014474) #31	ENSCABG00000014478	PURG (ENSCABG00000014479) #30
Goode s thornscrub tortoise	MODERN SPECIES	19	MTHFD2L (ENSGEVG00005006754)	EPGN (ENSGEVG00005006793)	EREG (ENSGEVG00005006889)	BTC (ENSGEVG00005006948)	ENSGEVG00005006975	ENSGEVG00005006993	PARM1 (ENSGEVG00005007007)	RCHY1 (ENSGEVG00005007032)	ENSGEVG00005009086	CDKL2 (ENSGEVG00005009125)	G3BP2 (ENSGEVG00005009179)	USO1 (ENSGEVG00005009287)	ENSGEVG00005009521 #12	PRAG1 (ENSGEVG00005009545) #11	MBOAT4 (ENSGEVG00005009578) #21	DCTN6 (ENSGEVG00005009621) #22	RBPMS (ENSGEVG00005009681) #23	GTF2E2 (ENSGEVG00005009833) #25	SMIM18 (ENSGEVG00005009857) #24	WRN (ENSGEVG00005009898) #31	PURG (ENSGEVG00005010058) #30	TEX15 (ENSGEVG00005010118) #29	PPP2CB (ENSGEVG00005010228) #28	GSR (ENSGEVG00005010270) #26	SH2D4A (ENSGEVG00005010298)	CSGALNACT1 (ENSGEVG00005010328)	INTS10 (ENSGEVG00005010402)	HGSNAT (ENSGEVG00005010535)	POMK (ENSGEVG00005010580)	SMIM19 (ENSGEVG00005010606)	SLC20A2 (ENSGEVG00005010652)
Chinese turtle	MODERN SPECIES	1225	AREG (ENSPSIG00000008602)	BTC (ENSPSIG00000008547)	PARM1 (ENSPSIG00000008544)	RCHY1 (ENSPSIG00000008537)	THAP6 (ENSPSIG00000008533)	CDKL2 (ENSPSIG00000008110)	G3BP2 (ENSPSIG00000007933)	ENSPSIG00000007890	ENSPSIG00000007530	ENSPSIG00000007523	ENSPSIG00000007444	ENSPSIG00000006610 #13	CLDN23 (ENSPSIG00000000539) #12	PRAG1 (ENSPSIG00000006601) #11	MBOAT4 (ENSPSIG00000006574) #21	DCTN6 (ENSPSIG00000006432) #22	RBPMS (ENSPSIG00000006136) #23	GTF2E2 (ENSPSIG00000006031) #25	WRN (ENSPSIG00000013411) #31	PURG (ENSPSIG00000000534) #30	PPP2CB (ENSPSIG00000013167) #28	GSR (ENSPSIG00000012867) #26	SH2D4A (ENSPSIG00000012809)	CSGALNACT1 (ENSPSIG00000012585)	INTS10 (ENSPSIG00000011748)	HGSNAT (ENSPSIG00000010879)	POMK (ENSPSIG00000010597)	SMIM19 (ENSPSIG00000010505)	SLC20A2 (ENSPSIG00000010024)	ENSPSIG00000009537
Archosauria	ANCESTRAL SPECIES	43	ENSGT00940000153372.A.e.a.a	ENSGT00390000007731	ENSGT00390000013339	ENSGT00940000157778	ENSGT00940000155534.u.a	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196	ENSGT00940000154827	ENSGT00940000156423	ENSGT00530000064292.b	ENSGT00990000205360	ENSGT00530000064292.a	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26
Aves	ANCESTRAL SPECIES	39	ENSGT00940000153372.A.e.a.a	ENSGT00390000007731	ENSGT00390000013339	ENSGT00940000157778	ENSGT00940000155534.u.a	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196	ENSGT00940000154827	ENSGT00940000156423	ENSGT00530000064292.b.a	ENSGT00990000205360	ENSGT00530000064292.a	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000160368	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a
Neognathae	ANCESTRAL SPECIES	37	ENSGT00940000153372.A.e.a.a	ENSGT00390000007731	ENSGT00390000013339	ENSGT00940000157778	ENSGT00940000155534.u.a	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196	ENSGT00940000154827	ENSGT00940000156423	ENSGT00530000064292.b.a	ENSGT00530000064292.b.b	ENSGT00530000064292.a	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000160368	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000153372.A.e.a.a	ENSGT00390000007731	ENSGT00390000013339	ENSGT00940000157778	ENSGT00940000155534.u.a	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196	ENSGT00940000154827	ENSGT00940000156423	ENSGT00530000064292.b.a	ENSGT00530000064292.b.b	ENSGT00530000064292.a	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000160368	ENSGT00390000002219	ENSGT00940000154589.b	ENSGT00940000159753	ENSGT00940000162895
Neognathae_c	ANCESTRAL SPECIES	3																ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000160368	ENSGT00390000002219	ENSGT00940000154589.b	ENSGT00940000159753	ENSGT00940000162895
Golden eagle	MODERN SPECIES		UGT8 (ENSACCG00020014321)	ARSJ (ENSACCG00020014341)	ENSACCG00020014417	ANK2 (ENSACCG00020014584)	LARP7 (ENSACCG00020014843)	ENSACCG00020014861	ENSACCG00020014872	NEUROG2 (ENSACCG00020014888)	ALPK1 (ENSACCG00020014898)	TIFA (ENSACCG00020014914)	AP1AR (ENSACCG00020014935)	CDKL2 (ENSACCG00020014976)	RCHY1 (ENSACCG00020014996)	PARM1 (ENSACCG00020015005)	BTC (ENSACCG00020015022)	DCTN6 (ENSACCG00020015031) #22	RBPMS (ENSACCG00020015053) #23	GTF2E2 (ENSACCG00020015076) #25	SMIM18 (ENSACCG00020015089) #24	WRN (ENSACCG00020015135) #31	PURG (ENSACCG00020015181) #30	PPP2CB (ENSACCG00020015188) #28	GSR (ENSACCG00020015271) #26	ENSACCG00020015311	MRPL1 (ENSACCG00020015331)	CNOT6L (ENSACCG00020015348)	ENSACCG00020015365	ENSACCG00020015376	ENSACCG00020015391	CCNG2 (ENSACCG00020015402)	CCNI (ENSACCG00020015418)
Kakapo	MODERN SPECIES	20	USO1 (ENSSHBG00005014449)	AREG (ENSSHBG00005014567)	EREG (ENSSHBG00005014574)	MTHFD2L (ENSSHBG00005014593)	ADAMTS3 (ENSSHBG00005014619)	COX18 (ENSSHBG00005014646)	ANKRD17 (ENSSHBG00005014959)	ALB (ENSSHBG00005017404)	ENSSHBG00005017412	RASSF6 (ENSSHBG00005017413)	ENSSHBG00005017414	ENSSHBG00005017415	ENSSHBG00005017416	ENSSHBG00005017417	ENSSHBG00005017418	DCTN6 (ENSSHBG00005017419) #22	RBPMS (ENSSHBG00005017420) #23	GTF2E2 (ENSSHBG00005017423) #25	SMIM18 (ENSSHBG00005017424) #24	WRN (ENSSHBG00005017427) #31	PPP2CB (ENSSHBG00005017435) #28	GSR (ENSSHBG00005017440) #26	BTC (ENSSHBG00005017559)	PARM1 (ENSSHBG00005017562)	RCHY1 (ENSSHBG00005017569)	CDKL2 (ENSSHBG00005017574)	AP1AR (ENSSHBG00005017579)	TIFA (ENSSHBG00005017582)	ALPK1 (ENSSHBG00005017586)	NEUROG2 (ENSSHBG00005017590)	ENSSHBG00005017595
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00940000155279.C	ENSGT00940000154949.b	ENSGT00940000167533	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000160368	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00390000000113.B	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000163761	ENSGT00940000162168	ENSGT00940000157298	ENSGT00530000064292.a	ENSGT00530000064292.b.b	ENSGT00530000064292.b.a	ENSGT00940000156423	ENSGT00940000154827
Great tit	MODERN SPECIES	23	CNOT6L (ENSPMJG00000001397)	MRPL1 (ENSPMJG00000001423)	FRAS1 (ENSPMJG00000001475)	ANK2 (ENSPMJG00000001561)	LARP7 (ENSPMJG00000005701)	ENSPMJG00000005710	NEUROG2 (ENSPMJG00000005715)	ALPK1 (ENSPMJG00000005717)	TIFA (ENSPMJG00000005719)	AP1AR (ENSPMJG00000005720)	CDKL2 (ENSPMJG00000005721)	RCHY1 (ENSPMJG00000005722)	ENSPMJG00000005723	BTC (ENSPMJG00000005724)	GC (ENSPMJG00000005726)	DCTN6 (ENSPMJG00000005728) #22	RBPMS (ENSPMJG00000005729) #23	GTF2E2 (ENSPMJG00000005735) #25	SMIM18 (ENSPMJG00000005739) #24	WRN (ENSPMJG00000005741) #31	PURG (ENSPMJG00000005762) #30	GSR (ENSPMJG00000005763) #26	ENSPMJG00000005770	ARSJ (ENSPMJG00000005819)	UGT8 (ENSPMJG00000005820)	NDST4 (ENSPMJG00000005823)	ENSPMJG00000005864	NDST3 (ENSPMJG00000005910)	PRSS12 (ENSPMJG00000007273)	METTL14 (ENSPMJG00000007279)	SEC24D (ENSPMJG00000007297)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00940000155279.C	ENSGT00940000154949.b	ENSGT00940000167533	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000160368	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00390000000113.B	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000163761	ENSGT00940000162168	ENSGT00940000157298	ENSGT00530000064292.a	ENSGT00530000064292.b.b	ENSGT00530000064292.b.a	ENSGT00940000156423	ENSGT00940000154827
Passeriformes_g	ANCESTRAL SPECIES	31	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00940000155279.C	ENSGT00940000154949.b	ENSGT00940000167533	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000160368	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00390000000113.B	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT01070000253744.b.b	ENSGT00940000163761	ENSGT00940000162168	ENSGT00940000157298	ENSGT00530000064292.a	ENSGT00530000064292.b.b	ENSGT00530000064292.b.a	ENSGT00940000156423
Passeroidea	ANCESTRAL SPECIES	33	ENSGT00940000156545	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00940000155279.C	ENSGT00940000154949.b	ENSGT00940000167533	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000160368	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00390000000113.B	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT01070000253744.b.b	ENSGT00940000162168	ENSGT00940000157298	ENSGT00530000064292.a	ENSGT00530000064292.b.b	ENSGT00530000064292.b.a	ENSGT00940000156423	ENSGT00940000154827
Common canary	MODERN SPECIES	64									ENSSCAG00000003009	ENSSCAG00000004173	CDKL2 (ENSSCAG00000004182)	RCHY1 (ENSSCAG00000004190)	ENSSCAG00000004211	ENSSCAG00000004214	ENSSCAG00000004215	DCTN6 (ENSSCAG00000004225) #22	RBPMS (ENSSCAG00000004267) #23	GTF2E2 (ENSSCAG00000004270) #25	SMIM18 (ENSSCAG00000004274) #24	WRN (ENSSCAG00000004279) #31	PURG (ENSSCAG00000004292) #30	PPP2CB (ENSSCAG00000004293) #28	GSR (ENSSCAG00000004298) #26	NPFFR2 (ENSSCAG00000004349)	SLC4A4 (ENSSCAG00000004356)	DCK (ENSSCAG00000004374)	MOB1B (ENSSCAG00000004380)	GRSF1 (ENSSCAG00000004385)	RUFY3 (ENSSCAG00000004394)	JCHAIN (ENSSCAG00000004416)	SDAD1 (ENSSCAG00000004423)
Zebra finch	MODERN SPECIES	25	UGT8 (ENSTGUG00000001840)	ARSJ (ENSTGUG00000001839)	ENSTGUG00000001821	ANK2 (ENSTGUG00000001807)	LARP7 (ENSTGUG00000001804)	ENSTGUG00000001801	NEUROG2 (ENSTGUG00000028152)	ALPK1 (ENSTGUG00000001800)	GC (ENSTGUG00000018912)	TIFA (ENSTGUG00000001799)	AP1AR (ENSTGUG00000001796)	CDKL2 (ENSTGUG00000001792)	RCHY1 (ENSTGUG00000001787)	PARM1 (ENSTGUG00000020184)	BTC (ENSTGUG00000001783)	DCTN6 (ENSTGUG00000001779) #22	RBPMS (ENSTGUG00000001776) #23	GTF2E2 (ENSTGUG00000001771) #25	SMIM18 (ENSTGUG00000029751) #24	WRN (ENSTGUG00000001765) #31	PURG (ENSTGUG00000001764) #30	PPP2CB (ENSTGUG00000001762) #28	GSR (ENSTGUG00000001759) #26	NPFFR2 (ENSTGUG00000001757)	MRPL1 (ENSTGUG00000001739)	CNOT6L (ENSTGUG00000001737)	ENSTGUG00000023861	ENSTGUG00000024222	ENSTGUG00000015689	CCNG2 (ENSTGUG00000001728)	CCNI (ENSTGUG00000001723)
Medium ground finch	MODERN SPECIES	238	USO1 (ENSGFOG00000009512)	G3BP2 (ENSGFOG00000010667)	ENSGFOG00000010672	ANK2 (ENSGFOG00000010689)	LARP7 (ENSGFOG00000010808)	ENSGFOG00000010836	ENSGFOG00000010823	ALPK1 (ENSGFOG00000010847)	ENSGFOG00000010882	AP1AR (ENSGFOG00000010889)	CDKL2 (ENSGFOG00000010901)	RCHY1 (ENSGFOG00000010913)	ENSGFOG00000010918	BTC (ENSGFOG00000010922)	ENSGFOG00000010928	DCTN6 (ENSGFOG00000010935) #22	RBPMS (ENSGFOG00000010940) #23	GTF2E2 (ENSGFOG00000010944) #25	SMIM18 (ENSGFOG00000010946) #24	WRN (ENSGFOG00000010954) #31	PURG (ENSGFOG00000010965) #30	PPP2CB (ENSGFOG00000010971) #28	GSR (ENSGFOG00000010990) #26	NPFFR2 (ENSGFOG00000010998)
Galloanserae	ANCESTRAL SPECIES	34	ENSGT00940000153372.A.e.a.a	ENSGT00390000007731	ENSGT01010000223442	ENSGT00940000157778	ENSGT00940000155534.u.a	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196	ENSGT00940000154827	ENSGT00940000156423	ENSGT00530000064292.b.a	ENSGT00530000064292.b.b	ENSGT00530000064292.a	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000160368	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a
Anatidae	ANCESTRAL SPECIES	2	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00390000007731	ENSGT01010000223442	ENSGT00940000157778	ENSGT00940000155534.u.a	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196	ENSGT00940000154827	ENSGT00940000156423	ENSGT00530000064292.b.a	ENSGT00530000064292.b.b	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT01030000235199	ENSGT00390000008853	ENSGT00940000160368	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950
Duck	MODERN SPECIES	22	SCARB2 (ENSAPLG00000009561)	STBD1 (ENSAPLG00000020939)	ENSAPLG00000029664	SHROOM3 (ENSAPLG00000010141)	ENSAPLG00000010245	SOWAHB (ENSAPLG00000019832)	SEPTIN11 (ENSAPLG00000010395)	CCNI (ENSAPLG00000010886)	CCNG2 (ENSAPLG00000011007)	ENSAPLG00000003708	ENSAPLG00000003704	ENSAPLG00000001305	CNOT6L (ENSAPLG00000003448)	MRPL1 (ENSAPLG00000003428)	ENSAPLG00000002906	DCTN6 (ENSAPLG00000002813) #22	RBPMS (ENSAPLG00000002808) #23	SMIM18 (ENSAPLG00000029519) #24	GTF2E2 (ENSAPLG00000002511) #25	WRN (ENSAPLG00000001616) #31	PURG (ENSAPLG00000026522) #30	PPP2CB (ENSAPLG00000019492) #28	GSR (ENSAPLG00000000763) #26	RCHY1 (ENSAPLG00000014976)	CDKL2 (ENSAPLG00000014440)	SH2D4A (ENSAPLG00000014421)	CSGALNACT1 (ENSAPLG00000014335)	INTS10 (ENSAPLG00000014036)	HGSNAT (ENSAPLG00000014020)	POMK (ENSAPLG00000013912)	SMIM19 (ENSAPLG00000000735)
Pink-footed goose	MODERN SPECIES	45												ENSABRG00000019555	CNOT6L (ENSABRG00000019565)	ENSABRG00000019599	ENSABRG00000019615	DCTN6 (ENSABRG00000019632) #22	RBPMS (ENSABRG00000019634) #23	GTF2E2 (ENSABRG00000019637) #25	SMIM18 (ENSABRG00000019641) #24	WRN (ENSABRG00000019658) #31	PURG (ENSABRG00000019768) #30	PPP2CB (ENSABRG00000019770) #28	GSR (ENSABRG00000019776) #26	BTC (ENSABRG00000019811)	ENSABRG00000019812	RCHY1 (ENSABRG00000019816)	CDKL2 (ENSABRG00000019818)	SH2D4A (ENSABRG00000019832)	CSGALNACT1 (ENSABRG00000019844)	INTS10 (ENSABRG00000019853)	HGSNAT (ENSABRG00000019864)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT01030000234633.C.b	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000163989.a.a	ENSGT00940000156423	ENSGT00530000064292.b.a	ENSGT00530000064292.b.b	ENSGT00530000064292.a	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000158247	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000014635	ENSGT00530000063854
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT01030000234633.C.b	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000163989.a.a	ENSGT00940000156423	ENSGT00530000064292.b.a	ENSGT00530000064292.b.b	ENSGT00530000064292.a	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159168 #31	ENSGT00950000183162.b #30	ENSGT00550000074618.a.b #28	ENSGT00940000156986 #26	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000158247	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000014635	ENSGT00530000063854
Chicken	MODERN SPECIES	33	MMRN1 (ENSGALG00010008376)	SNCA (ENSGALG00010008368)	GPRIN3 (ENSGALG00010008320)	FAM13A (ENSGALG00010008290)	HERC3 (ENSGALG00010008241)	PYURF (ENSGALG00010008232)	PIGY (ENSGALG00010008229)	ENSGALG00010008221	CCNG2 (ENSGALG00010008214)	CXCL13L3 (ENSGALG00010009146)	CXCL13L2 (ENSGALG00010008206)	CXCL13 (ENSGALG00010008203)	CNOT6L (ENSGALG00010008193)	MRPL1 (ENSGALG00010008165)	ENSGALG00010008152	DCTN6 (ENSGALG00010008143) #22	RBPMS (ENSGALG00010008103) #23	SMIM18 (ENSGALG00010008071) #24	GTF2E2 (ENSGALG00010008056) #25	WRN (ENSGALG00010008038) #31	PURG (ENSGALG00010008026) #30	PPP2CB (ENSGALG00010008019) #28	GSR (ENSGALG00010008016) #26	BTC (ENSGALG00010008008)	ENSGALG00010007987	RCHY1 (ENSGALG00010007983)	JADE1 (ENSGALG00010007978)	PGRMC2 (ENSGALG00010007942)	LARP1B (ENSGALG00010007935)	ABHD18 (ENSGALG00010007924)	MFSD8 (ENSGALG00010007893)
Turkey	MODERN SPECIES	24	ENSMGAG00000018059	ENSMGAG00000021132	ENSMGAG00000019933	ENSMGAG00000020635	CNOT6L (ENSMGAG00000005144)	PIGY (ENSMGAG00000018902)	ENSMGAG00000017034	ENSMGAG00000022718	ENSMGAG00000005319	ENSMGAG00000005208	ENSMGAG00000021971	ENSMGAG00000016247	ENSMGAG00000005504	ENSMGAG00000005507	ENSMGAG00000005519	DCTN6 (ENSMGAG00000005098) #22	ENSMGAG00000005088 #23	SMIM18 (ENSMGAG00000017957) #24	WRN (ENSMGAG00000004960) #31	PURG (ENSMGAG00000018242) #30	PPP2CB (ENSMGAG00000004928) #28	GSR (ENSMGAG00000004895) #26	ENSMGAG00000016243	ENSMGAG00000004888	JADE1 (ENSMGAG00000004842)	ENSMGAG00000005052 #25	PGRMC2 (ENSMGAG00000004839)	LARP1B (ENSMGAG00000004809)	ABHD18 (ENSMGAG00000004770)	MFSD8 (ENSMGAG00000004746)	PLK4 (ENSMGAG00000004698)
Japanese quail	MODERN SPECIES	22	CCSER1 (ENSCJPG00005009015)	MMRN1 (ENSCJPG00005009008)	SNCA (ENSCJPG00005009007)	GPRIN3 (ENSCJPG00005009003)	FAM13A (ENSCJPG00005008999)	HERC3 (ENSCJPG00005008998)	PYURF (ENSCJPG00005008997)	PIGY (ENSCJPG00005008996)	ENSCJPG00005008993	CCNG2 (ENSCJPG00005008990)	ENSCJPG00005008988	CXCL13 (ENSCJPG00005008987)	CNOT6L (ENSCJPG00005008985)	MRPL1 (ENSCJPG00005008984)	ENSCJPG00005008973	DCTN6 (ENSCJPG00005008972) #22	RBPMS (ENSCJPG00005008957) #23	SMIM18 (ENSCJPG00005008956) #24	GTF2E2 (ENSCJPG00005008955) #25	WRN (ENSCJPG00005008700) #31	PURG (ENSCJPG00005008699) #30	PPP2CB (ENSCJPG00005008698) #28	GSR (ENSCJPG00005008697) #26	BTC (ENSCJPG00005008696)	RCHY1 (ENSCJPG00005008682)	JADE1 (ENSCJPG00005008681)	PGRMC2 (ENSCJPG00005008640)	LARP1B (ENSCJPG00005008636)	ENSCJPG00005008633	ENSCJPG00005008632	MFSD8 (ENSCJPG00005008631)
African ostrich	MODERN SPECIES	1051	SDAD1 (ENSSCUG00000018697)	NAAA (ENSSCUG00000018695)	PPEF2 (ENSSCUG00000018694)	NUP54 (ENSSCUG00000018692)	SCARB2 (ENSSCUG00000018691)	CCDC158 (ENSSCUG00000018690)	SHROOM3 (ENSSCUG00000018689)	ENSSCUG00000018688	SEPTIN11 (ENSSCUG00000018687)	CCNI (ENSSCUG00000018686)	CCNG2 (ENSSCUG00000018685)	ENSSCUG00000018684	CNOT6L (ENSSCUG00000018683)	MRPL1 (ENSSCUG00000018682)	ENSSCUG00000018681	DCTN6 (ENSSCUG00000018679) #22	RBPMS (ENSSCUG00000018678) #23	SMIM18 (ENSSCUG00000018677) #24	GTF2E2 (ENSSCUG00000018676) #25	WRN (ENSSCUG00000018675) #31	PURG (ENSSCUG00000018674) #30	PPP2CB (ENSSCUG00000018672) #28	GSR (ENSSCUG00000018671) #26	RCHY1 (ENSSCUG00000018670)	CDKL2 (ENSSCUG00000018669)	SH2D4A (ENSSCUG00000018665)	CSGALNACT1 (ENSSCUG00000018664)	INTS10 (ENSSCUG00000018663)	POMK (ENSSCUG00000018662)	HGSNAT (ENSSCUG00000018661)	SLC20A2 (ENSSCUG00000018660)
Anura	ANCESTRAL SPECIES	329														ENSGT00940000157066 #11	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25
Leishan spiny toad	MODERN SPECIES		AFF1 (ENSLLEG00000000695)	ENSLLEG00000000677	PTPN13 (ENSLLEG00000000491)	MAPK10 (ENSLLEG00000000421)	ARHGAP24 (ENSLLEG00000000396)	ENSLLEG00000000390	ENSLLEG00000000385	WDFY3 (ENSLLEG00000000278)	CDS1 (ENSLLEG00000000239)	NKX6-1 (ENSLLEG00000000217)	ENSLLEG00000000211	ENSLLEG00000000205	PRAG1 (ENSLLEG00000000188) #11	ENSLLEG00000000182	MBOAT4 (ENSLLEG00000000177) #21	DCTN6 (ENSLLEG00000000144) #22	ENSLLEG00000000135	RBPMS (ENSLLEG00000000095) #23	ENSLLEG00000000039	SMIM18 (ENSLLEG00000003768) #24	ENSLLEG00000003766	GTF2E2 (ENSLLEG00000003757) #25	ENSLLEG00000003747	GSR (ENSLLEG00000003727) #26	ENSLLEG00000003718	SARAF (ENSLLEG00000003707) #19	LEPROTL1 (ENSLLEG00000003696) #20	ENSLLEG00000003689	CHRNB3 (ENSLLEG00000003642)	CHRNA6 (ENSLLEG00000003612)	ENSLLEG00000003530
Frog	MODERN SPECIES		ENSXETG00000039265	cnot6l (ENSXETG00000000372)	mrpl1 (ENSXETG00000000373)	fras1 (ENSXETG00000000377)	anxa3 (ENSXETG00000017985)	ptpn9l (ENSXETG00000017990)	dnah6 (ENSXETG00000031483)	ENSXETG00000018003	pde6b (ENSXETG00000018012)	rbp4l (ENSXETG00000018022)	slc26a1 (ENSXETG00000041999)	idua (ENSXETG00000031913)	chrna6 (ENSXETG00000010249)	prc1.2 (ENSXETG00000018081)	chrnb3 (ENSXETG00000010250)	dctn6 (ENSXETG00000010252) #22	rbpms (ENSXETG00000034458) #23	smim18 (ENSXETG00000042707) #24	gtf2e2 (ENSXETG00000011291) #25	saraf (ENSXETG00000011292) #19	ENSXETG00000044792	gsr (ENSXETG00000011293) #26	ENSXETG00000032873	leprotl1 (ENSXETG00000041192) #20	cops4 (ENSXETG00000030947)	mboat4 (ENSXETG00000034457) #21	prag1 (ENSXETG00000017090) #11	epha5 (ENSXETG00000034200)	ENSXETG00000046402	ENSXETG00000046817	cenpc (ENSXETG00000031099)
Coelacanth	MODERN SPECIES	2205															ERI1 (ENSLACG00000002833) #15	DCTN6 (ENSLACG00000005604) #22	ENSLACG00000009128
Actinopterygii	ANCESTRAL SPECIES	503														ENSGT00990000203806	ENSGT00940000155527	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25
Reedfish	MODERN SPECIES	13	SEL1L3 (ENSECRG00000003357)	smim20 (ENSECRG00000003341)	ENSECRG00000003329	SNCA (ENSECRG00000003319)	ENSECRG00000003313	ENSECRG00000003301	ENSECRG00000003291	cldne (ENSECRG00000003282)	ENSECRG00000003274	grid2 (ENSECRG00000003242)	atoh1a (ENSECRG00000003216)	HPGDS (ENSECRG00000003206)	ENSECRG00000003199	ENSECRG00000003191	ADGRL3 (ENSECRG00000003173)	DCTN6 (ENSECRG00000003149) #22	gtf2e2 (ENSECRG00000003117) #25	vldlr (ENSECRG00000003060)	ENSECRG00000003004	ints10 (ENSECRG00000002990)	kcnv2b (ENSECRG00000002976)	ENSECRG00000002969	pdlim5b (ENSECRG00000002952)	BMPR1B (ENSECRG00000002928)	aga (ENSECRG00000002913)	ENSECRG00000002907	ENSECRG00000002899	ENSECRG00000002892	tenm3 (ENSECRG00000002887)	ENSECRG00000002879	ENSECRG00000002850
Neopterygii	ANCESTRAL SPECIES	112	ENSGT00940000163988	ENSGT00940000156061	ENSGT00940000160757	ENSGT01100000263500.b.a.a.a.a.b.b.b.a.a	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.D	ENSGT00940000155804	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527	ENSGT00940000154658.a	ENSGT00950000182886.a.b	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00390000001491.a	ENSGT00390000010434.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00390000014293.a	ENSGT00940000161376
Spotted gar	MODERN SPECIES	670	SVEP1 (ENSLOCG00000013366)	ENSLOCG00000013359	ENSLOCG00000013356	ENSLOCG00000013352	ENSLOCG00000013350	smc2 (ENSLOCG00000013338)	ecpas (ENSLOCG00000013324)	kdm4c (ENSLOCG00000013308)	PTPRD (ENSLOCG00000013272)	TYRP1 (ENSLOCG00000013264)	LURAP1L (ENSLOCG00000013262)	MPDZ (ENSLOCG00000013247)	ADGRL3 (ENSLOCG00000013236)	ENSLOCG00000013213	ENSLOCG00000013208	DCTN6 (ENSLOCG00000013206) #22	RBPMS (ENSLOCG00000013199) #23	gtf2e2 (ENSLOCG00000013191) #25	ENSLOCG00000013178	pi4k2b (ENSLOCG00000013173)	ENSLOCG00000013161	zcchc4 (ENSLOCG00000013153)	pde5ab (ENSLOCG00000013138)	ARSJ (ENSLOCG00000013135)	camk2d1 (ENSLOCG00000013115)	ANK2 (ENSLOCG00000013099)	CLCN3 (ENSLOCG00000013089)	hpf1 (ENSLOCG00000013083)	cbr4 (ENSLOCG00000013078)	PALLD (ENSLOCG00000013061)	fam114a1 (ENSLOCG00000013058)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00390000017890.a #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00390000017890.a #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00390000017890.a #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00390000017890.a #22
Denticle herring	MODERN SPECIES	7	tpcn2 (ENSDCDG00000031902)	nadsyn1 (ENSDCDG00000031887)	ENSDCDG00000031868	ipo7 (ENSDCDG00000030506)	tmem41b (ENSDCDG00000030491)	DENND5A (ENSDCDG00000030342)	ENSDCDG00000030324	cyba (ENSDCDG00000030323)	mvda (ENSDCDG00000030310)	pdcd5 (ENSDCDG00000030300)	bola3 (ENSDCDG00000030293)	mc1r (ENSDCDG00000030288)	tcf25 (ENSDCDG00000028876)	ENSDCDG00000028818	ENSDCDG00000028816	DCTN6 (ENSDCDG00000028813) #22	SLC7A9 (ENSDCDG00000027566)	nudt19 (ENSDCDG00000027554)	RGS9BP (ENSDCDG00000027553)	ENSDCDG00000027551	ENSDCDG00000027550	GABARAPL2 (ENSDCDG00000027549)	MATCAP1 (ENSDCDG00000027547)	csnk2a2a (ENSDCDG00000027545)	ZNF319 (ENSDCDG00000027544)	ENSDCDG00000027543	sirt3 (ENSDCDG00000027538)	drd4b (ENSDCDG00000027522)	slc22a18 (ENSDCDG00000027502)	aprt (ENSDCDG00000027498)	CDT1 (ENSDCDG00000027496)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00390000017890.b.a #22
Clupeocephala	ANCESTRAL SPECIES	693														ENSGT01030000236196	ENSGT00940000155527.j.b	ENSGT00390000017890.b.a #22
Euteleosteomorpha	ANCESTRAL SPECIES	103		ENSGT00950000183177.a.b.b	ENSGT00530000063690.a.a	ENSGT00390000003601.b	ENSGT01060000248860	ENSGT00940000157580.a.b	ENSGT00940000160654	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT01030000236196	ENSGT00940000155527.j.b	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a	ENSGT00390000000214.a.b.l	ENSGT00400000023727	ENSGT00940000165832	ENSGT00940000154757.xb.b	ENSGT00940000163443	ENSGT00940000155857.e.a	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876
Acanthomorphata	ANCESTRAL SPECIES	40				ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000155857.e.a	ENSGT00940000163443	ENSGT00940000154757.xb.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT01030000236196	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578	ENSGT00390000003601.b
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000155857.e.a	ENSGT00940000163443	ENSGT00940000154757.xb.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT01030000236196	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578	ENSGT00390000003601.b
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00940000160246.c.a	ENSGT00390000018004	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT01030000236196	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578	ENSGT00390000003601.b
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000155150.a	ENSGT00940000155279.C.a.a	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00400000023727.a.a	ENSGT00400000023727.a.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00990000203806	ENSGT00940000155527.j.b	ENSGT01030000236196	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000159769.a.b	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT01030000236196	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Aplocheiloidei	ANCESTRAL SPECIES	32	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Mangrove rivulus	MODERN SPECIES	86						ppp2r2ca (ENSKMAG00000000648)	WFS1 (ENSKMAG00000000636)	ENSKMAG00000000620	crmp1 (ENSKMAG00000000535)	ENSKMAG00000000524	ENSKMAG00000000514	ENSKMAG00000000501	ENSKMAG00000000490	rbpja (ENSKMAG00000000445)	HGSNAT (ENSKMAG00000000428)	DCTN6 (ENSKMAG00000000386) #22	smim18 (ENSKMAG00000000378) #24	gtf2e2 (ENSKMAG00000000332) #25	ADGRL3 (ENSKMAG00000000299)	ENSKMAG00000000275	ENSKMAG00000000249	TYRP1 (ENSKMAG00000000177)	ENSKMAG00000022021	ENSKMAG00000021994	ecpas (ENSKMAG00000021979)	smc2 (ENSKMAG00000021962)	exoc1l (ENSKMAG00000021957)	clockb (ENSKMAG00000021952)	kitb (ENSKMAG00000021945)	fip1l1b (ENSKMAG00000021938)	chic2 (ENSKMAG00000021934)
Turquoise killifish	MODERN SPECIES	392														HGSNAT (ENSNFUG00015009608)	ENSNFUG00015009922	DCTN6 (ENSNFUG00015009936) #22	GTF2E2 (ENSNFUG00015009991) #25	smim18 (ENSNFUG00015010168) #24
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000155279.C.a.a.l	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b.j	ENSGT00400000023727.b.i	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.a.l	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b.j	ENSGT00400000023727.b.i	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b.j	ENSGT00400000023727.b.i	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
NAME_6	ANCESTRAL SPECIES	47	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b.j	ENSGT00400000023727.b.i	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Sailfin molly	MODERN SPECIES	533													STIM2 (ENSPLAG00000020878)	rbpja (ENSPLAG00000020897)	ENSPLAG00000020920	ENSPLAG00000020962 #22	smim18 (ENSPLAG00000020984) #24	gtf2e2 (ENSPLAG00000021007) #25	ENSPLAG00000021021	ADGRL3 (ENSPLAG00000021073)
Amazon molly	MODERN SPECIES	295		ENSPFOG00000017033	camk2d2 (ENSPFOG00000017035)	ANK2 (ENSPFOG00000016848)	hpf1 (ENSPFOG00000016797)	ENSPFOG00000016766	ppp2r2ca (ENSPFOG00000016742)	WFS1 (ENSPFOG00000016702)	crmp1 (ENSPFOG00000016623)	ENSPFOG00000016595	ENSPFOG00000016592	ENSPFOG00000024524	STIM2 (ENSPFOG00000016556)	rbpja (ENSPFOG00000016494)	ENSPFOG00000016453	ENSPFOG00000016433 #22	smim18 (ENSPFOG00000020146) #24	gtf2e2 (ENSPFOG00000016382) #25	ADGRL3 (ENSPFOG00000016241)	ENSPFOG00000016179	TYRP1 (ENSPFOG00000016088)	ENSPFOG00000015661	ENSPFOG00000015484	ecpas (ENSPFOG00000015283)	smc2 (ENSPFOG00000015169)	exoc1l (ENSPFOG00000015164)	clockb (ENSPFOG00000015083)	kitb (ENSPFOG00000014822)	fip1l1b (ENSPFOG00000014745)	ENSPFOG00000014723	chic2 (ENSPFOG00000014707)
Guppy	MODERN SPECIES	439	FBXO10 (ENSPREG00000009485)	ENSPREG00000009499	ENSPREG00000009575	camk2d2 (ENSPREG00000009806)	ANK2 (ENSPREG00000009960)	hpf1 (ENSPREG00000010038)	ppp2r2ca (ENSPREG00000010056)	WFS1 (ENSPREG00000010077)	crmp1 (ENSPREG00000010103)	ENSPREG00000010129	ENSPREG00000010138	ENSPREG00000010148	STIM2 (ENSPREG00000010192)	rbpja (ENSPREG00000010297)	ENSPREG00000010444	DCTN6 (ENSPREG00000010472) #22	gtf2e2 (ENSPREG00000010486) #25	smim18 (ENSPREG00000010507) #24	ADGRL3 (ENSPREG00000010586)	ENSPREG00000010850	TYRP1 (ENSPREG00000010917)	ENSPREG00000011036	ENSPREG00000011230	ecpas (ENSPREG00000011321)	smc2 (ENSPREG00000011769)	exoc1l (ENSPREG00000011864)	CLOCK (ENSPREG00000011939)	kitb (ENSPREG00000012489)	fip1l1b (ENSPREG00000012535)	chic2 (ENSPREG00000012604)	suz12b (ENSPREG00000012644)
Platyfish	MODERN SPECIES	19	ENSXMAG00000026893	camk2d2 (ENSXMAG00000012446)	ENSXMAG00000028088	ENSXMAG00000021771	ENSXMAG00000012408	hpf1 (ENSXMAG00000012400)	ENSXMAG00000013671	ppp2r2ca (ENSXMAG00000012375)	WFS1 (ENSXMAG00000012351)	crmp1 (ENSXMAG00000012278)	ENSXMAG00000012258	ENSXMAG00000026434	STIM2 (ENSXMAG00000012254)	rbpja (ENSXMAG00000012207)	ENSXMAG00000012177	ENSXMAG00000023015 #22	smim18 (ENSXMAG00000019693) #24	gtf2e2 (ENSXMAG00000012141) #25	ENSXMAG00000021800	ADGRL3 (ENSXMAG00000012102)	ENSXMAG00000012077	TYRP1 (ENSXMAG00000012045)	ENSXMAG00000011984	kdm4c (ENSXMAG00000023645)	ENSXMAG00000026276	ENSXMAG00000027231	smc2 (ENSXMAG00000004544)	exoc1l (ENSXMAG00000022359)	clockb (ENSXMAG00000028575)	kitb (ENSXMAG00000017634)	fip1l1b (ENSXMAG00000017620)
NAME_4	ANCESTRAL SPECIES	388												ENSGT00400000023727.b.i	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24
Mummichog	MODERN SPECIES	992													STIM2 (ENSFHEG00000015262)	rbpja (ENSFHEG00000015345)	ENSFHEG00000015358	DCTN6 (ENSFHEG00000015367) #22	gtf2e2 (ENSFHEG00000015401) #25	smim18 (ENSFHEG00000015409) #24
Sheepshead minnow	MODERN SPECIES	985												ENSCVAG00000013331	STIM2 (ENSCVAG00000013338)	rbpja (ENSCVAG00000013395)	HGSNAT (ENSCVAG00000013431)	ENSCVAG00000013460 #22	smim18 (ENSCVAG00000013467) #24	gtf2e2 (ENSCVAG00000013488) #25
Oryzias	ANCESTRAL SPECIES	15	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Javanese ricefish	MODERN SPECIES		FBXO10 (ENSOJAG00000013714)	ENSOJAG00000000078	CXCL8 (ENSOJAG00000000132)	camk2d2 (ENSOJAG00000000420)	ENSOJAG00000001074	hpf1 (ENSOJAG00000002044)	ENSOJAG00000002069	ppp2r2ca (ENSOJAG00000002089)	WFS1 (ENSOJAG00000002110)	crmp1 (ENSOJAG00000002315)	ENSOJAG00000002948	ENSOJAG00000002956	STIM2 (ENSOJAG00000003027)	rbpja (ENSOJAG00000003267)	HGSNAT (ENSOJAG00000003456)	DCTN6 (ENSOJAG00000003897) #22	gtf2e2 (ENSOJAG00000004072) #25	smim18 (ENSOJAG00000004223) #24	ADGRL3 (ENSOJAG00000004774)	ENSOJAG00000007820	TYRP1 (ENSOJAG00000007953)	ENSOJAG00000008199	kdm4c (ENSOJAG00000013891)	smc2 (ENSOJAG00000015443)	exoc1l (ENSOJAG00000016206)	clockb (ENSOJAG00000016253)	kitb (ENSOJAG00000016645)	fip1l1b (ENSOJAG00000017102)	chic2 (ENSOJAG00000017109)	ENSOJAG00000017140	ENSOJAG00000017176
Indian medaka	MODERN SPECIES	21	ENSOMEG00000013850	camk2d2 (ENSOMEG00000014019)	ENSOMEG00000014053	ENSOMEG00000014101	ENSOMEG00000014138	ENSOMEG00000014166	hpf1 (ENSOMEG00000014263)	ENSOMEG00000014313	ppp2r2ca (ENSOMEG00000014344)	WFS1 (ENSOMEG00000014371)	crmp1 (ENSOMEG00000014427)	ENSOMEG00000014461	ENSOMEG00000014488	rbpja (ENSOMEG00000014525)	ENSOMEG00000014565	DCTN6 (ENSOMEG00000014586) #22	smim18 (ENSOMEG00000014593) #24	gtf2e2 (ENSOMEG00000014610) #25	ADGRL3 (ENSOMEG00000014640)	ENSOMEG00000014698	TYRP1 (ENSOMEG00000014715)	ENSOMEG00000014764	ENSOMEG00000014791	ENSOMEG00000001027	ecpas (ENSOMEG00000014908)	smc2 (ENSOMEG00000014982)	exoc1l (ENSOMEG00000000377)	clockb (ENSOMEG00000015412)	kitb (ENSOMEG00000015661)	fip1l1b (ENSOMEG00000015730)	chic2 (ENSOMEG00000015778)
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000162559	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000155626	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	272													STIM2 (ENSOSIG00000000579)	rbpja (ENSOSIG00000000585)	ENSOSIG00000000637	DCTN6 (ENSOSIG00000000644) #22	gtf2e2 (ENSOSIG00000000648) #25	smim18 (ENSOSIG00000000650) #24	ENSOSIG00000000656	ENSOSIG00000000668	TYRP1 (ENSOSIG00000000687)	ENSOSIG00000001740	ENSOSIG00000021167	smc2 (ENSOSIG00000021184)	exoc1l (ENSOSIG00000021194)	clockb (ENSOSIG00000021261)	kitb (ENSOSIG00000021456)	fip1l1b (ENSOSIG00000021461)	chic2 (ENSOSIG00000021464)	ENSOSIG00000021465	ENSOSIG00000021466
Chinese medaka	MODERN SPECIES	3577																ENSOSIG00000002427 #22
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000029230	ENSORLG00000030473	ENSORLG00000005003	hpf1 (ENSORLG00000004968)	ENSORLG00000029779	ppp2r2ca (ENSORLG00000004957)	WFS1 (ENSORLG00000004929)	crmp1 (ENSORLG00000027778)	ENSORLG00000004916	ENSORLG00000023677	ENSORLG00000026446	ENSORLG00000028789	ENSORLG00000029705	ENSORLG00000004897	ENSORLG00000004882	DCTN6 (ENSORLG00000004837) #22	smim18 (ENSORLG00000023687) #24	gtf2e2 (ENSORLG00000004825) #25	ENSORLG00000004806	ENSORLG00000004792	ENSORLG00000004753	ENSORLG00000004723	ENSORLG00000004685	kdm4c (ENSORLG00000004619)	ecpas (ENSORLG00000004593)	smc2 (ENSORLG00000004556)	exoc1l (ENSORLG00000027626)	clockb (ENSORLG00000004495)	kitb (ENSORLG00000004401)	fip1l1b (ENSORLG00000004397)	chic2 (ENSORLG00000004366)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT01030000236196	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000179958	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT01100000263949.b	ENSGT00400000023727.a.a.c	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000181745	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977
Eastern happy	MODERN SPECIES	18	ENSACLG00000013625	ENSACLG00000013497	camk2d2 (ENSACLG00000012862)	ENSACLG00000012468	hpf1 (ENSACLG00000012405)	ENSACLG00000012374	ppp2r2ca (ENSACLG00000012319)	WFS1 (ENSACLG00000012306)	crmp1 (ENSACLG00000012241)	ENSACLG00000012221	ENSACLG00000012186	ENSACLG00000012155	STIM2 (ENSACLG00000012115)	rbpja (ENSACLG00000012078)	HGSNAT (ENSACLG00000012041)	DCTN6 (ENSACLG00000011976) #22	smim18 (ENSACLG00000011954) #24	gtf2e2 (ENSACLG00000011939) #25	ADGRL3 (ENSACLG00000011861)	ENSACLG00000011772	TYRP1 (ENSACLG00000011752)	ENSACLG00000011719	ENSACLG00000011227	ENSACLG00000011213	ENSACLG00000011182	ecpas (ENSACLG00000011055)	smc2 (ENSACLG00000010966)	exoc1l (ENSACLG00000010957)	clockb (ENSACLG00000010583)	kitb (ENSACLG00000010468)	fip1l1b (ENSACLG00000010418)
Zebra mbuna	MODERN SPECIES	1109	pds5a (ENSMZEG00005023687)	UBE2K (ENSMZEG00005023693)	smim14 (ENSMZEG00005023696)	map9 (ENSMZEG00005023698)	ugdh (ENSMZEG00005023700)	lias (ENSMZEG00005023703)	rpl9 (ENSMZEG00005023706)	rfc1 (ENSMZEG00005023710)	WDR19 (ENSMZEG00005023719)	ENSMZEG00005023725	ENSMZEG00005023726	ENSMZEG00005023729	STIM2 (ENSMZEG00005023732)	rbpja (ENSMZEG00005023737)	HGSNAT (ENSMZEG00005023744)	DCTN6 (ENSMZEG00005023748) #22	gtf2e2 (ENSMZEG00005023750) #25	smim18 (ENSMZEG00005023754) #24	ADGRL3 (ENSMZEG00005023776)	ENSMZEG00005023817	TYRP1 (ENSMZEG00005023818)	ENSMZEG00005023819	ENSMZEG00005023820	ENSMZEG00005023821	ENSMZEG00005023822	ecpas (ENSMZEG00005023823)	smc2 (ENSMZEG00005023824)	exoc1l (ENSMZEG00005023825)	clockb (ENSMZEG00005023826)	kitb (ENSMZEG00005023827)	fip1l1b (ENSMZEG00005023828)
P. nyererei	MODERN SPECIES	482											ENSPNYG00000015013	ENSPNYG00000015030	STIM2 (ENSPNYG00000015047)	rbpja (ENSPNYG00000015075)	HGSNAT (ENSPNYG00000015105)	DCTN6 (ENSPNYG00000015135) #22	gtf2e2 (ENSPNYG00000015163) #25	smim18 (ENSPNYG00000015178) #24	ENSPNYG00000015185	ADGRL3 (ENSPNYG00000015202)	ENSPNYG00000015247	TYRP1 (ENSPNYG00000015263)	ENSPNYG00000015301	kdm4c (ENSPNYG00000015367)	ecpas (ENSPNYG00000015414)	smc2 (ENSPNYG00000015529)	exoc1l (ENSPNYG00000015577)	clockb (ENSPNYG00000015652)	kitb (ENSPNYG00000015929)	fip1l1b (ENSPNYG00000015976)	ENSPNYG00000015994
Burton s mouthbrooder	MODERN SPECIES	593													ENSHBUG00000015027	rbpja (ENSHBUG00000015000)	HGSNAT (ENSHBUG00000014941)	DCTN6 (ENSHBUG00000014920) #22	gtf2e2 (ENSHBUG00000014885) #25	smim18 (ENSHBUG00000014870) #24	ADGRL3 (ENSHBUG00000014840)	ENSHBUG00000014642	TYRP1 (ENSHBUG00000014613)	ENSHBUG00000000425	ENSHBUG00000014479	ENSHBUG00000014453	ecpas (ENSHBUG00000014406)	smc2 (ENSHBUG00000014284)	exoc1l (ENSHBUG00000014198)	clockb (ENSHBUG00000014187)	kitb (ENSHBUG00000014002)	fip1l1b (ENSHBUG00000013978)
Lyretail cichlid	MODERN SPECIES	301	ENSNBRG00000016909	ENSNBRG00000016923	camk2d2 (ENSNBRG00000016936)	ENSNBRG00000016961	ENSNBRG00000017003	ENSNBRG00000017029	hpf1 (ENSNBRG00000017051)	ENSNBRG00000017070	ppp2r2ca (ENSNBRG00000017086)	WFS1 (ENSNBRG00000017107)	crmp1 (ENSNBRG00000017119)	ENSNBRG00000017148	STIM2 (ENSNBRG00000017167)	rbpja (ENSNBRG00000017183)	HGSNAT (ENSNBRG00000017214)	DCTN6 (ENSNBRG00000017226) #22	gtf2e2 (ENSNBRG00000017242) #25	smim18 (ENSNBRG00000017249) #24	ADGRL3 (ENSNBRG00000017271)	ENSNBRG00000017338	TYRP1 (ENSNBRG00000017425)	ENSNBRG00000017456	kdm4c (ENSNBRG00000017522)	ecpas (ENSNBRG00000017570)	smc2 (ENSNBRG00000017664)	exoc1l (ENSNBRG00000017710)	CLOCK (ENSNBRG00000017733)	ENSNBRG00000017792	ENSNBRG00000017814	fip1l1b (ENSNBRG00000017832)	chic2 (ENSNBRG00000017853)
Nile tilapia	MODERN SPECIES	18	ENSONIG00000040454	ENSONIG00000029754	camk2d2 (ENSONIG00000008917)	ENSONIG00000008914	hpf1 (ENSONIG00000008911)	ENSONIG00000008905	ppp2r2ca (ENSONIG00000008902)	WFS1 (ENSONIG00000008897)	crmp1 (ENSONIG00000008887)	ENSONIG00000008880	ENSONIG00000037076	ENSONIG00000042062	STIM2 (ENSONIG00000008875)	rbpja (ENSONIG00000043047)	HGSNAT (ENSONIG00000008872)	DCTN6 (ENSONIG00000008868) #22	gtf2e2 (ENSONIG00000008865) #25	smim18 (ENSONIG00000043015) #24	ADGRL3 (ENSONIG00000008860)	ENSONIG00000029433	TYRP1 (ENSONIG00000008846)	ENSONIG00000008832	kdm4c (ENSONIG00000008824)	ecpas (ENSONIG00000008818)	smc2 (ENSONIG00000008811)	exoc1l (ENSONIG00000008809)	clockb (ENSONIG00000008797)	kitb (ENSONIG00000008788)	fip1l1b (ENSONIG00000008785)	chic2 (ENSONIG00000041516)	ENSONIG00000031405
Midas cichlid	MODERN SPECIES	274	hpf1 (ENSACIG00000012747)	ENSACIG00000012764	ppp2r2ca (ENSACIG00000012807)	WFS1 (ENSACIG00000012828)	crmp1 (ENSACIG00000012963)	ENSACIG00000014115	ENSACIG00000014131	ENSACIG00000014138	ENSACIG00000014151	ENSACIG00000014159	ENSACIG00000014168	ENSACIG00000014185	STIM2 (ENSACIG00000014212)	rbpja (ENSACIG00000014433)	ENSACIG00000014471	DCTN6 (ENSACIG00000014499) #22	gtf2e2 (ENSACIG00000014507) #25	smim18 (ENSACIG00000014520) #24	ENSACIG00000014529	ADGRL3 (ENSACIG00000014545)
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000155279.C.a.b.f	ENSGT00940000177601	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT00940000155586.B	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	363													STIM2 (ENSAPOG00000003635)	rbpja (ENSAPOG00000003569)	HGSNAT (ENSAPOG00000003539)	DCTN6 (ENSAPOG00000003515) #22	gtf2e2 (ENSAPOG00000003480) #25	smim18 (ENSAPOG00000003456) #24	ADGRL3 (ENSAPOG00000003416)	ENSAPOG00000003232	ENSAPOG00000003157	TYRP1 (ENSAPOG00000002999)	ENSAPOG00000002897
Spiny chromis	MODERN SPECIES	4451																DCTN6 (ENSAPOG00000009467) #22
Amphiprion	ANCESTRAL SPECIES		ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b.f	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000159842.pc.a.a.b.b.b.a	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000020603	ENSAPEG00000020615	camk2d2 (ENSAPEG00000020635)	ENSAPEG00000020656	ENSAPEG00000020724	hpf1 (ENSAPEG00000020760)	ENSAPEG00000020790	ppp2r2ca (ENSAPEG00000020822)	WFS1 (ENSAPEG00000020866)	crmp1 (ENSAPEG00000020908)	ENSAPEG00000020969	ENSAPEG00000021025	ENSAPEG00000021067	rbpja (ENSAPEG00000021264)	HGSNAT (ENSAPEG00000021302)	DCTN6 (ENSAPEG00000021316) #22	gtf2e2 (ENSAPEG00000021340) #25	smim18 (ENSAPEG00000021366) #24	ENSAPEG00000021388	ADGRL3 (ENSAPEG00000021421)	ENSAPEG00000021616	ENSAPEG00000021642	TYRP1 (ENSAPEG00000021687)	ENSAPEG00000021741	kdm4c (ENSAPEG00000021825)	ecpas (ENSAPEG00000021886)	smc2 (ENSAPEG00000021997)	exoc1l (ENSAPEG00000022070)	clockb (ENSAPEG00000022094)	kitb (ENSAPEG00000022173)	fip1l1b (ENSAPEG00000022229)
Clown anemonefish	MODERN SPECIES	1451													ENSAOCG00000003287	rbpja (ENSAOCG00000003307)	HGSNAT (ENSAOCG00000003320)	DCTN6 (ENSAOCG00000003326) #22	smim18 (ENSAOCG00000003332) #24	gtf2e2 (ENSAOCG00000000085) #25	mibp2 (ENSAOCG00000003342)	ADGRL3 (ENSAOCG00000003408)	ENSAOCG00000003491	TYRP1 (ENSAOCG00000003527)	ENSAOCG00000003549
Bicolor damselfish	MODERN SPECIES	299		ENSSPAG00000019128	ENSSPAG00000019101	ENSSPAG00000019071	hpf1 (ENSSPAG00000019040)	ENSSPAG00000019019	ENSSPAG00000019008	ppp2r2ca (ENSSPAG00000018993)	WFS1 (ENSSPAG00000018975)	crmp1 (ENSSPAG00000018953)	ENSSPAG00000018928	ENSSPAG00000018914	STIM2 (ENSSPAG00000018902)	rbpja (ENSSPAG00000018868)	ENSSPAG00000018839	DCTN6 (ENSSPAG00000018797) #22	smim18 (ENSSPAG00000018779) #24	gtf2e2 (ENSSPAG00000018750) #25	ADGRL3 (ENSSPAG00000018591)	ENSSPAG00000018541	TYRP1 (ENSSPAG00000018509)	ENSSPAG00000018086	ENSSPAG00000017995	ENSSPAG00000017961	ecpas (ENSSPAG00000017833)	ENSSPAG00000017806	smc2 (ENSSPAG00000017757)	exoc1l (ENSSPAG00000017743)	clockb (ENSSPAG00000017640)	kitb (ENSSPAG00000017583)	fip1l1b (ENSSPAG00000017564)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00400000023727.a.a	ENSGT00400000023727.a.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00990000203806	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00400000023727.a.a	ENSGT00400000023727.a.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Siamese fighting fish	MODERN SPECIES		polr1e (ENSBSLG00000024846)	FBXO10 (ENSBSLG00000024838)	ENSBSLG00000024710	ENSBSLG00000024701	camk2d2 (ENSBSLG00000024485)	ENSBSLG00000023696	hpf1 (ENSBSLG00000023652)	ENSBSLG00000023594	ppp2r2ca (ENSBSLG00000023578)	WFS1 (ENSBSLG00000023569)	crmp1 (ENSBSLG00000022943)	ENSBSLG00000022796	ENSBSLG00000022659	rbpja (ENSBSLG00000022652)	HGSNAT (ENSBSLG00000022618)	DCTN6 (ENSBSLG00000022566) #22	smim18 (ENSBSLG00000022561) #24	gtf2e2 (ENSBSLG00000022545) #25	ENSBSLG00000020834	ENSBSLG00000020767	TYRP1 (ENSBSLG00000020744)	ENSBSLG00000012935	kdm4c (ENSBSLG00000012714)	ecpas (ENSBSLG00000012695)	smc2 (ENSBSLG00000012664)	exoc1l (ENSBSLG00000012657)	clockb (ENSBSLG00000012519)	kitb (ENSBSLG00000012404)	fip1l1b (ENSBSLG00000012315)	chic2 (ENSBSLG00000012275)	ENSBSLG00000012267
Climbing perch	MODERN SPECIES		ZBTB5 (ENSATEG00000020589)	ENSATEG00000020609	FBXO10 (ENSATEG00000020631)	CXCL8 (ENSATEG00000028656)	ENSATEG00000020661	camk2d2 (ENSATEG00000020671)	ENSATEG00000020709	hpf1 (ENSATEG00000020795)	ppp2r2ca (ENSATEG00000020822)	WFS1 (ENSATEG00000020851)	crmp1 (ENSATEG00000020872)	ENSATEG00000020897	ENSATEG00000020936	rbpja (ENSATEG00000021086)	ENSATEG00000021103	DCTN6 (ENSATEG00000021125) #22	GTF2E2 (ENSATEG00000021140) #25	SMIM18 (ENSATEG00000021153) #24	ENSATEG00000021184	ENSATEG00000029001	ENSATEG00000021292	ENSATEG00000021335	ENSATEG00000021528	ENSATEG00000021558	ENSATEG00000021647	exoc1l (ENSATEG00000021675)	ENSATEG00000021687	ENSATEG00000021737	ENSATEG00000021757	ENSATEG00000015358	ENSATEG00000021789
Zig-zag eel	MODERN SPECIES		FBXO10 (ENSMAMG00000001233)	ENSMAMG00000001272	ENSMAMG00000001287	camk2d2 (ENSMAMG00000001316)	ENSMAMG00000001435	hpf1 (ENSMAMG00000001555)	ENSMAMG00000001584	ppp2r2ca (ENSMAMG00000001659)	WFS1 (ENSMAMG00000001700)	crmp1 (ENSMAMG00000001735)	ENSMAMG00000024407	ENSMAMG00000001890	ENSMAMG00000001901	rbpja (ENSMAMG00000001939)	ENSMAMG00000002005	DCTN6 (ENSMAMG00000002028) #22	GTF2E2 (ENSMAMG00000002039) #25	SMIM18 (ENSMAMG00000002067) #24	ENSMAMG00000025250	ENSMAMG00000028522	ENSMAMG00000028189	ENSMAMG00000002197	ENSMAMG00000002219	ENSMAMG00000002446	ENSMAMG00000002529	ENSMAMG00000002550	ENSMAMG00000002562	ENSMAMG00000002670 #19	ENSMAMG00000002686	ENSMAMG00000002704	ENSMAMG00000002717
Carangaria	ANCESTRAL SPECIES		ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.a.a	ENSGT00400000023727.a.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.a.a	ENSGT00400000023727.a.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Seriola	ANCESTRAL SPECIES	29	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Yellowtail amberjack	MODERN SPECIES	2982	ENSSLDG00000024905	ENSSLDG00000024899	camk2d2 (ENSSLDG00000024872)	ANK2 (ENSSLDG00000024800)	hpf1 (ENSSLDG00000024781)	ENSSLDG00000024778	ENSSLDG00000024772	ppp2r2ca (ENSSLDG00000024757)	WFS1 (ENSSLDG00000024747)	crmp1 (ENSSLDG00000024703)	ENSSLDG00000024695	ENSSLDG00000024689	STIM2 (ENSSLDG00000024677)	rbpja (ENSSLDG00000024657)	ENSSLDG00000024640	DCTN6 (ENSSLDG00000024624) #22	smim18 (ENSSLDG00000024621) #24	gtf2e2 (ENSSLDG00000024609) #25	ENSSLDG00000024602	ADGRL3 (ENSSLDG00000024579)	ENSSLDG00000024571	TYRP1 (ENSSLDG00000024554)	ENSSLDG00000024546	ENSSLDG00000024512	ENSSLDG00000024480	kdm4c (ENSSLDG00000024407)	ecpas (ENSSLDG00000024289)	smc2 (ENSSLDG00000024240)	exoc1l (ENSSLDG00000024231)	ENSSLDG00000024209	kitb (ENSSLDG00000024132)
Greater amberjack	MODERN SPECIES	102													STIM2 (ENSSDUG00000003300)	rbpja (ENSSDUG00000003478)	ENSSDUG00000003524	DCTN6 (ENSSDUG00000003551) #22	gtf2e2 (ENSSDUG00000003582) #25	smim18 (ENSSDUG00000003601) #24	ENSSDUG00000003605	ADGRL3 (ENSSDUG00000003616)	ENSSDUG00000003680	TYRP1 (ENSSDUG00000003709)	ENSSDUG00000003734	ENSSDUG00000003802	ENSSDUG00000003819	ENSSDUG00000003831	ecpas (ENSSDUG00000003877)	smc2 (ENSSDUG00000003986)	exoc1l (ENSSDUG00000004042)	clockb (ENSSDUG00000004057)	kitb (ENSSDUG00000004094)
Barramundi perch	MODERN SPECIES	237			ENSLCAG00010028036	hpf1 (ENSLCAG00010028035)	ENSLCAG00010028034	ppp2r2ca (ENSLCAG00010028033)	WFS1 (ENSLCAG00010028032)	crmp1 (ENSLCAG00010028030)	ENSLCAG00010028029	ENSLCAG00010028028	ENSLCAG00010028027	ENSLCAG00010028026	STIM2 (ENSLCAG00010028025)	rbpja (ENSLCAG00010028024)	HGSNAT (ENSLCAG00010028023)	ENSLCAG00010028022 #22	smim18 (ENSLCAG00010028021) #24	gtf2e2 (ENSLCAG00010028020) #25	ADGRL3 (ENSLCAG00010028018)	ENSLCAG00010028016	TYRP1 (ENSLCAG00010028014)	ENSLCAG00010027801	kdm4c (ENSLCAG00010027698)	ecpas (ENSLCAG00010027680)	smc2 (ENSLCAG00010027653)	exoc1l (ENSLCAG00010027647)	clockb (ENSLCAG00010027638)	kitb (ENSLCAG00010027617)	fip1l1b (ENSLCAG00010027597)
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Turbot	MODERN SPECIES	20	ENSSMAG00000011731	CXCL8 (ENSSMAG00000011742)	camk2d2 (ENSSMAG00000011762)	ENSSMAG00000011868	ENSSMAG00000027862	hpf1 (ENSSMAG00000011981)	ENSSMAG00000012004	ppp2r2ca (ENSSMAG00000012018)	WFS1 (ENSSMAG00000034750)	crmp1 (ENSSMAG00000012069)	ENSSMAG00000027615	ENSSMAG00000024259	ENSSMAG00000012189	rbpja (ENSSMAG00000012195)	ENSSMAG00000012281	DCTN6 (ENSSMAG00000012302) #22	GTF2E2 (ENSSMAG00000012351) #25	SMIM18 (ENSSMAG00000012371) #24	ENSSMAG00000012386	ENSSMAG00000012539	ENSSMAG00000012712	ENSSMAG00000012743	ENSSMAG00000012984	ENSSMAG00000013083	ENSSMAG00000013228	exoc1l (ENSSMAG00000037823)	ENSSMAG00000013284	ENSSMAG00000013415	ENSSMAG00000013444	ENSSMAG00000013553	ENSSMAG00000013580
Tongue sole	MODERN SPECIES	19	ZBTB5 (ENSCSEG00000005116)	polr1e (ENSCSEG00000005121)	ENSCSEG00000005125	FBXO10 (ENSCSEG00000005128)	ENSCSEG00000005131	camk2d2 (ENSCSEG00000005184)	ANK2 (ENSCSEG00000005938)	hpf1 (ENSCSEG00000005962)	ppp2r2ca (ENSCSEG00000005966)	WFS1 (ENSCSEG00000005973)	crmp1 (ENSCSEG00000005981)	ENSCSEG00000005997	STIM2 (ENSCSEG00000006014)	rbpja (ENSCSEG00000006030)	ENSCSEG00000006097	DCTN6 (ENSCSEG00000006103) #22	gtf2e2 (ENSCSEG00000006111) #25	smim18 (ENSCSEG00000006118) #24	ADGRL3 (ENSCSEG00000006125)	ENSCSEG00000006192	TYRP1 (ENSCSEG00000006262)	ENSCSEG00000006286	kdm4c (ENSCSEG00000006423)	ecpas (ENSCSEG00000006470)	smc2 (ENSCSEG00000006524)	exoc1l (ENSCSEG00000006537)	clockb (ENSCSEG00000006544)	kitb (ENSCSEG00000006569)	fip1l1b (ENSCSEG00000006583)	zgc:158803 (ENSCSEG00000006601)	ENSCSEG00000006609
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00990000203806	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Tetraodontidae	ANCESTRAL SPECIES	267																ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00940000155527.j.b
Fugu	DUPLICATION
Fugu	MODERN SPECIES	8	ENSTRUG00000013378	opn6a (ENSTRUG00000013409)	slc8a1a (ENSTRUG00000013535)	MAL (ENSTRUG00000013673)	pgap4 (ENSTRUG00000013719)	tpcn3 (ENSTRUG00000013729)	ENSTRUG00000013764	ENSTRUG00000032383	ENSTRUG00000013794	rcor3 (ENSTRUG00000013835)	SOS1 (ENSTRUG00000013953)	ENSTRUG00000028655	ENSTRUG00000022752	SLC29A1 (ENSTRUG00000028910)	ENSTRUG00000030929	ENSTRUG00000026927 #22	gtf2e2 (ENSTRUG00000004948) #25	STIM2 (ENSTRUG00000000799)	ENSTRUG00000031532	ENSTRUG00000003718	jupa (ENSTRUG00000000583)	ENSTRUG00000033337	ENSTRUG00000004797 #22	gtf2e2 (ENSTRUG00000028017) #25	ENSTRUG00000028691	ENSTRUG00000030942	patl1 (ENSTRUG00000000709)	suclg1 (ENSTRUG00000000638)	ENSTRUG00000027160	ENSTRUG00000027425	ENSTRUG00000032245
Fugu	MODERN SPECIES	8	ctnna2 (ENSTRUG00000002863)	ENSTRUG00000020187	LRRTM1 (ENSTRUG00000004494)	ENSTRUG00000033430	ENSTRUG00000032775	ENSTRUG00000023192	ENSTRUG00000031293	ENSTRUG00000032245	ENSTRUG00000027425	ENSTRUG00000027160	suclg1 (ENSTRUG00000000638)	patl1 (ENSTRUG00000000709)	ENSTRUG00000030942	ENSTRUG00000028691	gtf2e2 (ENSTRUG00000028017) #25	ENSTRUG00000004797 #22	ENSTRUG00000033337	jupa (ENSTRUG00000000583)	ENSTRUG00000003718	ENSTRUG00000031532	STIM2 (ENSTRUG00000000799)	gtf2e2 (ENSTRUG00000004948) #25	ENSTRUG00000026927 #22	ENSTRUG00000030929	SLC29A1 (ENSTRUG00000028910)	ENSTRUG00000022752	ENSTRUG00000028655	SOS1 (ENSTRUG00000013953)	rcor3 (ENSTRUG00000013835)	ENSTRUG00000013794	ENSTRUG00000032383
Tetraodon	MODERN SPECIES	10	TENM3 (ENSTNIG00000005377)	slc2a15a (ENSTNIG00000006363)	fgf8a (ENSTNIG00000006362)	fbxw4 (ENSTNIG00000005242)	wbp1la (ENSTNIG00000005241)	RNF166 (ENSTNIG00000004433)	ENSTNIG00000004434	cyp17a1 (ENSTNIG00000019678)	ENSTNIG00000005961	ENSTNIG00000005463	FAM98A (ENSTNIG00000005464)	vps8 (ENSTNIG00000005465)	ENSTNIG00000000969	ENSTNIG00000018675	ENSTNIG00000019603	DCTN6 (ENSTNIG00000005141) #22	gtf2e2 (ENSTNIG00000005140) #25	ADGRL3 (ENSTNIG00000005139)	asah2 (ENSTNIG00000004618)	ENSTNIG00000004617	ENSTNIG00000001593	ENSTNIG00000004098	kdm4c (ENSTNIG00000004099)	ecpas (ENSTNIG00000004100)	smc2 (ENSTNIG00000004101)	clockb (ENSTNIG00000004102)	kitb (ENSTNIG00000004103)	fip1l1b (ENSTNIG00000004104)	ENSTNIG00000004105	chic2 (ENSTNIG00000004106)	ENSTNIG00000004107
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00990000203806	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	3498															ENSLBEG00000011492	ENSLBEG00000011514 #22
Ballan wrasse	MODERN SPECIES	240												ENSLBEG00000028784	STIM2 (ENSLBEG00000028785)	rbpja (ENSLBEG00000028786)	ENSLBEG00000028788	DCTN6 (ENSLBEG00000028789) #22	gtf2e2 (ENSLBEG00000028790) #25	smim18 (ENSLBEG00000028792) #24	ENSLBEG00000028794	ENSLBEG00000028797	ENSLBEG00000028798	TYRP1 (ENSLBEG00000028800)	ENSLBEG00000028801	kdm4c (ENSLBEG00000028803)	ecpas (ENSLBEG00000028805)	smc2 (ENSLBEG00000028807)	exoc1l (ENSLBEG00000028809)	ENSLBEG00000028813	kitb (ENSLBEG00000028818)	fip1l1b (ENSLBEG00000028819)	ENSLBEG00000028820
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000162559	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00990000203806	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT00390000003601.b
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000162559	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Gilthead seabream	MODERN SPECIES		ENSSAUG00010005953	camk2d2 (ENSSAUG00010006026)	ENSSAUG00010010856	hpf1 (ENSSAUG00010020745)	ENSSAUG00010020746	ppp2r2ca (ENSSAUG00010020748)	WFS1 (ENSSAUG00010020749)	crmp1 (ENSSAUG00010020754)	ENSSAUG00010020879	ENSSAUG00010020880	ENSSAUG00010020881	ENSSAUG00010020883	STIM2 (ENSSAUG00010020885)	rbpja (ENSSAUG00010020951)	ENSSAUG00010020981	DCTN6 (ENSSAUG00010020983) #22	gtf2e2 (ENSSAUG00010020988) #25	smim18 (ENSSAUG00010020991) #24	ADGRL3 (ENSSAUG00010021014)	ENSSAUG00010023668	TYRP1 (ENSSAUG00010023675)	ENSSAUG00010023740	kdm4c (ENSSAUG00010024690)	ecpas (ENSSAUG00010024842)	smc2 (ENSSAUG00010024993)	exoc1l (ENSSAUG00010025004)	ENSSAUG00010025005	clockb (ENSSAUG00010025019)	kitb (ENSSAUG00010025076)	fip1l1b (ENSSAUG00010025079)	chic2 (ENSSAUG00010025084)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000162559	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Large yellow croaker	DUPLICATION
Large yellow croaker	MODERN SPECIES	481	polr1e (ENSLCRG00005022998)	CXCL8 (ENSLCRG00005022997)	ENSLCRG00005022995	camk2d2 (ENSLCRG00005022490)	ENSLCRG00005020483	hpf1 (ENSLCRG00005020456)	ENSLCRG00005020451	ppp2r2ca (ENSLCRG00005020446)	WFS1 (ENSLCRG00005020444)	crmp1 (ENSLCRG00005017311)	ENSLCRG00005017292	ENSLCRG00005017291	STIM2 (ENSLCRG00005017288)	rbpja (ENSLCRG00005017286)	ENSLCRG00005017247	ENSLCRG00005017204 #22	smim18 (ENSLCRG00005017201) #24	gtf2e2 (ENSLCRG00005017199) #25	ADGRL3 (ENSLCRG00005014203)	ENSLCRG00005014151	TYRP1 (ENSLCRG00005014121)	ENSLCRG00005012949	kdm4c (ENSLCRG00005012860)	ecpas (ENSLCRG00005012572)	smc2 (ENSLCRG00005012562)	exoc1l (ENSLCRG00005012561)	clockb (ENSLCRG00005012516)	kitb (ENSLCRG00005012510)	chic2 (ENSLCRG00005012496)	ENSLCRG00005012491	ENSLCRG00005012487
Large yellow croaker	MODERN SPECIES	198																ENSLCRG00005001488 #22
European seabass	MODERN SPECIES	20	ZBTB5 (ENSDLAG00005033499)	ENSDLAG00005025906	FBXO10 (ENSDLAG00005025905)	ENSDLAG00005014206	camk2d2 (ENSDLAG00005032299)	ENSDLAG00005025100	hpf1 (ENSDLAG00005025041)	ENSDLAG00005025024	ppp2r2ca (ENSDLAG00005031161)	WFS1 (ENSDLAG00005029500)	crmp1 (ENSDLAG00005024927)	ENSDLAG00005024916	ENSDLAG00005024913	rbpja (ENSDLAG00005024887)	ENSDLAG00005024854	ENSDLAG00005030887 #22	SMIM18 (ENSDLAG00005024842) #24	ENSDLAG00005024835 #25	ENSDLAG00005023107	ENSDLAG00005022999	ENSDLAG00005022973	ENSDLAG00005015926	ENSDLAG00005015624	ENSDLAG00005014517	smc2 (ENSDLAG00005014443)	exoc1l (ENSDLAG00005014437)	ENSDLAG00005013892	ENSDLAG00005012617	ENSDLAG00005012563	ENSDLAG00005012338	ENSDLAG00005012323
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00990000203806	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT01060000248860
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00390000003601.b	ENSGT00940000165977	ENSGT00530000063690.a.a
Channel bull blenny	MODERN SPECIES		ZBTB5 (ENSCGOG00000015972)	polr1e (ENSCGOG00000015973)	ENSCGOG00000016071	ENSCGOG00000016095	camk2d2 (ENSCGOG00000016254)	ENSCGOG00000021379	hpf1 (ENSCGOG00000023505)	ENSCGOG00000000076	ppp2r2ca (ENSCGOG00000000122)	WFS1 (ENSCGOG00000000176)	crmp1 (ENSCGOG00000000289)	ENSCGOG00000000437	STIM2 (ENSCGOG00000000558)	rbpja (ENSCGOG00000000823)	ENSCGOG00000000921	DCTN6 (ENSCGOG00000000927) #22	gtf2e2 (ENSCGOG00000000950) #25	smim18 (ENSCGOG00000000954) #24	ADGRL3 (ENSCGOG00000001017)	ENSCGOG00000003030	TYRP1 (ENSCGOG00000003047)	ENSCGOG00000003397	ENSCGOG00000016252	ecpas (ENSCGOG00000016277)	smc2 (ENSCGOG00000016701)	ENSCGOG00000017249	exoc1l (ENSCGOG00000017250)	clockb (ENSCGOG00000017276)	kitb (ENSCGOG00000017978)	fip1l1b (ENSCGOG00000019240)	chic2 (ENSCGOG00000019241)
Pike perch	MODERN SPECIES	69	ENSSLUG00000024216	ENSSLUG00000024221	camk2d2 (ENSSLUG00000024418)	ENSSLUG00000025153	ENSSLUG00000025157	ENSSLUG00000025165	hpf1 (ENSSLUG00000025177)	ENSSLUG00000025180	ppp2r2ca (ENSSLUG00000025184)	WFS1 (ENSSLUG00000025185)	crmp1 (ENSSLUG00000025211)	ENSSLUG00000025328	STIM2 (ENSSLUG00000025345)	rbpja (ENSSLUG00000025378)	HGSNAT (ENSSLUG00000025391)	DCTN6 (ENSSLUG00000025399) #22	gtf2e2 (ENSSLUG00000025406) #25	smim18 (ENSSLUG00000025410) #24	ENSSLUG00000025412	ENSSLUG00000025413	ENSSLUG00000025416	ENSSLUG00000025422	hnrnpd (ENSSLUG00000025425)	TYRP1 (ENSSLUG00000025429)	ENSSLUG00000025842	kdm4c (ENSSLUG00000008356)	ecpas (ENSSLUG00000008642)	smc2 (ENSSLUG00000010884)	exoc1l (ENSSLUG00000010916)	clockb (ENSSLUG00000011054)	kitb (ENSSLUG00000014388)
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000160246.c.a	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00980000198676	ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00990000203806	ENSGT00940000155527.j.b	ENSGT00940000155586.A	ENSGT00940000155804.k.b	ENSGT00940000153617.C.f	ENSGT00940000166168	ENSGT00940000153612.A	ENSGT00550000074857	ENSGT00940000162193	ENSGT00940000157580.a.b	ENSGT00940000162578	ENSGT00940000166223.a	ENSGT01060000248860
Stickleback	MODERN SPECIES	4														rbpja (ENSGACG00000015888)	HGSNAT (ENSGACG00000015890)	DCTN6 (ENSGACG00000015891) #22	gtf2e2 (ENSGACG00000015893) #25	smim18 (ENSGACG00000015899) #24	ENSGACG00000015901	ENSGACG00000015904	ENSGACG00000015905	TYRP1 (ENSGACG00000015912)	ENSGACG00000015921	kdm4c (ENSGACG00000015922)	ecpas (ENSGACG00000015925)	smc2 (ENSGACG00000015927)	clockb (ENSGACG00000015939)	kitb (ENSGACG00000015944)	fip1l1b (ENSGACG00000015946)	ENSGACG00000015947	chic2 (ENSGACG00000015950)
Lumpfish	MODERN SPECIES		ZBTB5 (ENSCLMG00005000427)	polr1e (ENSCLMG00005000434)	FBXO10 (ENSCLMG00005000443)	ENSCLMG00005000452	camk2d2 (ENSCLMG00005000488)	ENSCLMG00005000820	ENSCLMG00005000823	hpf1 (ENSCLMG00005000835)	ppp2r2ca (ENSCLMG00005000837)	WFS1 (ENSCLMG00005000842)	crmp1 (ENSCLMG00005000855)	ENSCLMG00005000858	ENSCLMG00005000859	rbpja (ENSCLMG00005000865)	HGSNAT (ENSCLMG00005000902)	DCTN6 (ENSCLMG00005000917) #22	gtf2e2 (ENSCLMG00005000918) #25	smim18 (ENSCLMG00005000919) #24	ADGRL3 (ENSCLMG00005000920)	ENSCLMG00005000921	TYRP1 (ENSCLMG00005000925)	ENSCLMG00005000943	kdm4c (ENSCLMG00005001264)	ecpas (ENSCLMG00005001275)	smc2 (ENSCLMG00005001997)	exoc1l (ENSCLMG00005002002)	clockb (ENSCLMG00005002021)	ENSCLMG00005002611	ENSCLMG00005002613	chic2 (ENSCLMG00005002615)	ENSCLMG00005002617
Tiger tail seahorse	MODERN SPECIES	518						ANK2 (ENSHCOG00000013635)	ENSHCOG00000013648	hpf1 (ENSHCOG00000013653)	ppp2r2ca (ENSHCOG00000013679)	WFS1 (ENSHCOG00000013705)	crmp1 (ENSHCOG00000013745)	ENSHCOG00000013764	ENSHCOG00000013791	STIM2 (ENSHCOG00000014160)	ENSHCOG00000014189	DCTN6 (ENSHCOG00000014195) #22	gtf2e2 (ENSHCOG00000014209) #25	ENSHCOG00000014214	ADGRL3 (ENSHCOG00000014889)	ENSHCOG00000015042	TYRP1 (ENSHCOG00000015079)	ENSHCOG00000015136	kdm4c (ENSHCOG00000015229)	ecpas (ENSHCOG00000015292)	ENSHCOG00000015311	smc2 (ENSHCOG00000015385)	exoc1l (ENSHCOG00000015416)	clockb (ENSHCOG00000015784)	ENSHCOG00000015818	ENSHCOG00000015822	fip1l1b (ENSHCOG00000015834)
Pinecone sodierfish	MODERN SPECIES		hpf1 (ENSMMDG00005008525)	ENSMMDG00005008519	ppp2r2ca (ENSMMDG00005008515)	WFS1 (ENSMMDG00005008511)	crmp1 (ENSMMDG00005008507)	ITLN1 (ENSMMDG00005008500)	ENSMMDG00005008494	ENSMMDG00005008483	ENSMMDG00005008476	ENSMMDG00005008446	ENSMMDG00005008437	ENSMMDG00005008425	STIM2 (ENSMMDG00005008421)	rbpja (ENSMMDG00005008348)	ENSMMDG00005008335	ENSMMDG00005008328 #22	smim18 (ENSMMDG00005008323) #24	gtf2e2 (ENSMMDG00005008318) #25	ENSMMDG00005008314	ADGRL3 (ENSMMDG00005008289)	ENSMMDG00005008262	TYRP1 (ENSMMDG00005008254)	ENSMMDG00005008242	kdm4c (ENSMMDG00005008177)	ecpas (ENSMMDG00005006181)	smc2 (ENSMMDG00005006069)	exoc1l (ENSMMDG00005006062)	clockb (ENSMMDG00005004044)	kitb (ENSMMDG00005003764)	fip1l1b (ENSMMDG00005003737)	chic2 (ENSMMDG00005003725)
Cod	MODERN SPECIES	16	ENSGMOG00000006752	ENSGMOG00000006737	ENSGMOG00000006725	ENSGMOG00000006707	ENSGMOG00000009655	ENSGMOG00000033539	ENSGMOG00000025268	ENSGMOG00000025853	ENSGMOG00000034682	ENSGMOG00000026775	ENSGMOG00000031805	ENSGMOG00000000689	ENSGMOG00000004792	rbpja (ENSGMOG00000004951)	ENSGMOG00000004969	DCTN6 (ENSGMOG00000005001) #22	GTF2E2 (ENSGMOG00000005020) #25	SMIM18 (ENSGMOG00000005036) #24	ENSGMOG00000025924	ENSGMOG00000023389	ENSGMOG00000034123	ENSGMOG00000031432	ENSGMOG00000005190	ENSGMOG00000005206	ENSGMOG00000005228	ENSGMOG00000005282	ENSGMOG00000005339	ENSGMOG00000020061	stx8 (ENSGMOG00000018789)	ENSGMOG00000018803	ENSGMOG00000022966
Protacanthopterygii	ANCESTRAL SPECIES	159				ENSGT00390000003601.b	ENSGT00940000157580.a.b	ENSGT00940000160654	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000153617.C.e.a	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00390000001491.a	ENSGT00980000201267	ENSGT00390000005197.a.bb.a	ENSGT00390000000214.a.b.l	ENSGT00400000023727	ENSGT00940000165832	ENSGT00940000157037.a.c.b	ENSGT00940000164532.b	ENSGT00940000164532.a	ENSGT00940000156228.p	ENSGT00940000167973
Salmoninae	ANCESTRAL SPECIES	1037															ENSGT00940000155527.j.b.d.b	ENSGT00390000017890.b.a #22	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT01000000218684
Salmoninae_a	ANCESTRAL SPECIES	254															ENSGT00940000155527.j.b.d.b	ENSGT00390000017890.b.a #22	ENSGT00410000029064.a #24	ENSGT00390000011749 #25	ENSGT00410000029064.b #24
Salmo	ANCESTRAL SPECIES	273															ENSGT00940000155527.j.b.d.a	ENSGT00390000017890.b.a #22	ENSGT00410000029064.a #24	ENSGT00390000011749 #25	ENSGT00410000029064.b #24	ENSGT00390000001491.a.i	ENSGT00390000005197.a.bb.a	ENSGT00390000000214.a.b.l.d.a
Atlantic salmon	MODERN SPECIES	640															ENSSSAG00000107806	ENSSSAG00000065203 #22	SMIM18 (ENSSSAG00000120419) #24	gtf2e2 (ENSSSAG00000040128) #25	ENSSSAG00000035612	ENSSSAG00000112233	ENSSSAG00000004256
River trout	MODERN SPECIES	404					pcdh18a (ENSSTUG00000021752)	ENSSTUG00000021811	ENSSTUG00000021825	ENSSTUG00000021843	pcdh18a (ENSSTUG00000021846)	pcdh10a (ENSSTUG00000021851)	TYRP1 (ENSSTUG00000021874)	ENSSTUG00000022028	ENSSTUG00000022065	ENSSTUG00000022139	ENSSTUG00000022150	DCTN6 (ENSSTUG00000022165) #22	gtf2e2 (ENSSTUG00000022255) #25	smim18 (ENSSTUG00000022332) #24	ENSSTUG00000022357	ENSSTUG00000022744	ENSSTUG00000023011	ENSSTUG00000023102	zgc:195282 (ENSSTUG00000023153)	ENSSTUG00000023173	ENSSTUG00000023205	ENSSTUG00000023327	ENSSTUG00000023374	ENSSTUG00000023458	ENSSTUG00000023491	ENSSTUG00000023665	ENSSTUG00000023669
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	144														ENSGT00940000155527.j.b.d.b	ENSGT00390000017890.b.a.l #22	ENSGT00390000017890.b.a.k #22	ENSGT00390000011749.q.a #25	ENSGT00410000029064.a #24	ENSGT00390000001491.a	ENSGT00390000005197.a.cb.f.b.a	ENSGT00940000165832.r.b	ENSGT00940000157037.a.c.b	ENSGT00940000164532.a	ENSGT00940000164532.b.b	ENSGT00940000156228.p	ENSGT00940000167973.e.b.b.b
Rainbow trout	MODERN SPECIES	182												ENSOMYG00000076978	ENSOMYG00000073461	ENSOMYG00000076584	ENSOMYG00000057008	ENSOMYG00000076050 #22	SMIM18 (ENSOMYG00000053319) #24	gtf2e2 (ENSOMYG00000070860) #25	ENSOMYG00000059637	ENSOMYG00000064747	ENSOMYG00000069257	ENSOMYG00000035779	ENSOMYG00000039760	ENSOMYG00000059560
Oncorhynchus_a	ANCESTRAL SPECIES	224															ENSGT00940000155527.j.b.d.b	ENSGT00390000017890.b.a.k #22	ENSGT00390000011749.q.a #25	ENSGT00410000029064.a #24	ENSGT00390000001491.a	ENSGT00390000000214.a.b.l.d.b	ENSGT00940000157037.a.c.b	ENSGT00940000164532.a	ENSGT00940000164532.b.b	ENSGT00940000156228.p	ENSGT00940000167973.f.a
Coho salmon	MODERN SPECIES	1405															ENSOKIG00005049191	DCTN6 (ENSOKIG00005049198) #22	gtf2e2 (ENSOKIG00005049211) #25	smim18 (ENSOKIG00005049217) #24	ENSOKIG00005049228	ENSOKIG00005049263	ENSOKIG00005049322	ENSOKIG00005049577
Oncorhynchus	ANCESTRAL SPECIES	144															ENSGT00940000155527.j.b.d.b	ENSGT00390000017890.b.a.l #22	ENSGT00390000017890.b.a.k #22	ENSGT00390000011749.q.a #25	ENSGT00410000029064.a #24	ENSGT00390000001491.a	ENSGT00390000005197.a.cb.f.b.a	ENSGT00940000165832.r.b	ENSGT00940000157037.a.c.b	ENSGT00940000164532.a	ENSGT00940000164532.b.b	ENSGT00940000156228.p	ENSGT00940000167973.e.b.b.b
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000017890.b.a.l #22
Coho salmon	MODERN SPECIES	30															ENSOKIG00005031785	DCTN6 (ENSOKIG00005031650) #22	ENSOKIG00005030097	ENSOKIG00005029966	ENSOKIG00005029949	zgc:136472 (ENSOKIG00005029939)	ENSOKIG00005029929	PLK1 (ENSOKIG00005029808)	FSCN1 (ENSOKIG00005029773)	ENSOKIG00005029764	ENSOKIG00005029726	FBXL18 (ENSOKIG00005029708)	ENSOKIG00005029699	ENSOKIG00005029646	ENSOKIG00005029612	ENSOKIG00005029602	ENSOKIG00005029581
Rainbow trout	MODERN SPECIES	47															ENSOMYG00000059258	ENSOMYG00000074253 #22	ENSOMYG00000074924	ENSOMYG00000055128 #25	ENSOMYG00000065159	ENSOMYG00000050874	ENSOMYG00000057321
Huchen	MODERN SPECIES	7351																DCTN6 (ENSHHUG00000019819) #22	gtf2e2 (ENSHHUG00000019805) #25
Northern pike	MODERN SPECIES	24	kitb (ENSELUG00000009687)	ENSELUG00000009271	CLOCK (ENSELUG00000001519)	ENSELUG00000009792	exoc1l (ENSELUG00000009805)	smc2 (ENSELUG00000009845)	ecpas (ENSELUG00000009962)	kdm4c (ENSELUG00000010046)	ENSELUG00000001468	ENSELUG00000027629	ENSELUG00000026828	TYRP1 (ENSELUG00000010406)	ENSELUG00000010446	ADGRL3 (ENSELUG00000010500)	ENSELUG00000031260	DCTN6 (ENSELUG00000010524) #22	gtf2e2 (ENSELUG00000010556) #25	smim18 (ENSELUG00000010534) #24	ENSELUG00000010588	ENSELUG00000028012	rbpja (ENSELUG00000034120)	ENSELUG00000026247	rbpja (ENSELUG00000010624)	STIM2 (ENSELUG00000010815)	ENSELUG00000027435	ENSELUG00000010919	ENSELUG00000010945	ENSELUG00000010981	ENSELUG00000028614	RNF38 (ENSELUG00000032719)	CRIP2 (ENSELUG00000026773)
Otomorpha	ANCESTRAL SPECIES	590														ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00390000017890.b.a #22	ENSGT00390000011749 #25	ENSGT00410000029064 #24
Otophysi	ANCESTRAL SPECIES	347														ENSGT00390000002596.a	ENSGT00390000001189.b.i	ENSGT00390000017890.b.a #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b
Characiphysae	ANCESTRAL SPECIES	58	ENSGT01080000257488	ENSGT00490000043413	ENSGT00530000063614.a.b	ENSGT00940000155316	ENSGT00940000155521.b	ENSGT00940000164636	ENSGT00940000159796.a.b	ENSGT01070000253822.D.b.bb	ENSGT00980000198603.A	ENSGT00540000073610.B	ENSGT00940000155378.c.b	ENSGT00940000164430.a.b.a	ENSGT00940000159753	ENSGT00390000002596.a	ENSGT00390000001189.b.i	ENSGT00390000017890.b.a #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01060000248862	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000154644.jb.b.g.b	ENSGT00940000159867	ENSGT00390000011640	ENSGT00390000012424.a	ENSGT00940000161064	ENSGT00940000163749.a.a
Channel catfish	MODERN SPECIES	21	ENSIPUG00000013243	ENSIPUG00000013234	ENSIPUG00000013227	ENSIPUG00000013215	ENSIPUG00000013195	ENSIPUG00000013181	ENSIPUG00000013157	ENSIPUG00000013149	ENSIPUG00000013101	ENSIPUG00000013081	dctn1a (ENSIPUG00000012919)	epdl1 (ENSIPUG00000013074)	alpk1 (ENSIPUG00000012894)	ACY3 (ENSIPUG00000012662)	cldnd1a (ENSIPUG00000012525)	dctn6 (ENSIPUG00000012563) #22	RBPMS (ENSIPUG00000012459) #23	FABP2 (ENSIPUG00000012439)	ENSIPUG00000012426	ENSIPUG00000012414	ENSIPUG00000012405	dmrta1 (ENSIPUG00000012365)	elavl2 (ENSIPUG00000012337)	ENSIPUG00000012318	CAAP1 (ENSIPUG00000012290)	ENSIPUG00000012272	PTPRD (ENSIPUG00000011999)	ENSIPUG00000011950	ENSIPUG00000011926	ENSIPUG00000011910	ENSIPUG00000011901
Characiphysae_b	ANCESTRAL SPECIES	148											ENSGT00940000155378.c.b	ENSGT00940000164430.a.b.a	ENSGT00940000159753	ENSGT00390000002596.a	ENSGT00390000001189.b.i	ENSGT00390000017890.b.a #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01060000248862	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000154644.jb.b.g.b	ENSGT00940000159867	ENSGT00390000011640	ENSGT00390000012424.a	ENSGT00940000161064
Characoidei	ANCESTRAL SPECIES	168											ENSGT00940000155378.c.b	ENSGT00940000164430.a.b.a	ENSGT00940000159753	ENSGT00390000002596.a	ENSGT00390000001189.b.i	ENSGT00390000017890.b.a #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01060000248862	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000154644.jb.b.g.b	ENSGT00940000159867	ENSGT00390000011640	ENSGT00390000012424.a	ENSGT00940000161064	ENSGT00940000163749.a.a
Red-bellied piranha	MODERN SPECIES	351									ENSPNAG00000008223	dctn1a (ENSPNAG00000008205)	ENSPNAG00000008154	ENSPNAG00000008146	ENSPNAG00000008132	cldnd1a (ENSPNAG00000008120)	ACY3 (ENSPNAG00000029235)	DCTN6 (ENSPNAG00000029171) #22	RBPMS (ENSPNAG00000029160) #23	FABP2 (ENSPNAG00000029151)	DMRTA1 (ENSPNAG00000029124)	ENSPNAG00000004509	ENSPNAG00000006877	elavl2 (ENSPNAG00000029068)
Mexicana tetra	MODERN SPECIES	148								ENSAMXG00000036642	ENSAMXG00000024997	ENSAMXG00000010805	ENSAMXG00000041673	epdl1 (ENSAMXG00000042285)	ENSAMXG00000039396	cldnd1a (ENSAMXG00000010865)	ENSAMXG00000035524	DCTN6 (ENSAMXG00000029107) #22	RBPMS (ENSAMXG00000033491) #23	DMRTA1 (ENSAMXG00000041774)	elavl2 (ENSAMXG00000036990)	CAAP1 (ENSAMXG00000010921)	ENSAMXG00000010930	ENSAMXG00000032212	ENSAMXG00000024998	ADRA1D (ENSAMXG00000040492)	CTNNA2 (ENSAMXG00000035308)
Electric eel	MODERN SPECIES	465			ENSEEEG00000018813	ENSEEEG00000018812	ENSEEEG00000018811	ENSEEEG00000018810	rps6 (ENSEEEG00000018809)	ENSEEEG00000018808	dnaja1 (ENSEEEG00000018772)	patl1 (ENSEEEG00000018767)	dctn1a (ENSEEEG00000017783)	epdl1 (ENSEEEG00000017723)	ENSEEEG00000017716	ENSEEEG00000017713	ACY3 (ENSEEEG00000017631)	DCTN6 (ENSEEEG00000017621) #22	RBPMS (ENSEEEG00000017619) #23	FABP2 (ENSEEEG00000017585)	DMRTA1 (ENSEEEG00000017584)	ENSEEEG00000017582
Cyprinoidei	ANCESTRAL SPECIES	269													ENSGT00390000002596.a	ENSGT00390000002596.b.b	ENSGT00390000001189.b.i	ENSGT00390000017890.b.a #22	ENSGT00940000159617 #23
Cyprininae	ANCESTRAL SPECIES	1071														ENSGT00390000002596.b.b	ENSGT00390000001189.b.i	ENSGT00390000017890.b.a #22	ENSGT00940000159617.e #23
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	671														ENSGT00390000002596.b.b	ENSGT00390000001189.b.i	ENSGT00390000017890.b.a.m #22	ENSGT00940000159617.e #23	ENSGT00940000160640	ENSGT00940000165556.b	ENSGT00390000017010
Common carp reference	MODERN SPECIES	6													ENSCCRG00000054829	ENSCCRG00000025562	ENSCCRG00000062885	ENSCCRG00000072529 #22	ENSCCRG00000076715 #23	ENSCCRG00000034136	ENSCCRG00000066174	ENSCCRG00000058882	ENSCCRG00000064299	ENSCCRG00000080890	ENSCCRG00000071433	ENSCCRG00000082013	ENSCCRG00000059978	ENSCCRG00000074501	ENSCCRG00000071019	ENSCCRG00000076808	ENSCCRG00000051417	ENSCCRG00000072925	zgc:92594 (ENSCCRG00000061796)
Golden-line barbel	MODERN SPECIES	1808															ACY3 (ENSSGRG00000018652)	DCTN6 (ENSSGRG00000018651) #22	ENSSGRG00000018649 #23	ENSSGRG00000018648	ENSSGRG00000018647	ENSSGRG00000018645
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000017890.b.a.n #22
Golden-line barbel	MODERN SPECIES	2075																DCTN6 (ENSSGRG00000011814) #22	ENSSGRG00000011844 #23	ENSSGRG00000011846	ENSSGRG00000011850	ENSSGRG00000011873	ENSSGRG00000011883
Goldfish	MODERN SPECIES	25	spink4 (ENSCARG00000006313)	camk2d1 (ENSCARG00000005922)	mad2l1 (ENSCARG00000005849)	ENSCARG00000068853	pde5ab (ENSCARG00000068694)	ENSCARG00000068469	RNF166 (ENSCARG00000068444)	PIEZO1 (ENSCARG00000068112)	aprt (ENSCARG00000068085)	CDT1 (ENSCARG00000068072)	galns (ENSCARG00000068054)	CBFA2T3 (ENSCARG00000068044)	ENSCARG00000068038	cldnd1a (ENSCARG00000068030)	ENSCARG00000068028	DCTN6 (ENSCARG00000068011) #22	ENSCARG00000067998	ENSCARG00000067992	ENSCARG00000067991	ENSCARG00000067987	ENSCARG00000067980	ENSCARG00000067974	ENSCARG00000067967	ENSCARG00000067964	ENSCARG00000067957	ENSCARG00000067948	ENSCARG00000067943	ENSCARG00000067934	ENSCARG00000067919	ENSCARG00000067916	PTPRD (ENSCARG00000066199)
Clupeiformes	ANCESTRAL SPECIES	161											ENSGT00390000001577	ENSGT00940000162414	ENSGT00940000158402	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00390000017890.b.a #22	ENSGT00940000159617.c #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00950000182936.a.a.b.a	ENSGT00390000016644	ENSGT00390000017709	ENSGT00940000154986.b	ENSGT00940000177316	ENSGT01080000257488	ENSGT00940000156323.c.a	ENSGT00530000063614.a.b	ENSGT00490000043413	ENSGT00940000155905.a	ENSGT00940000155128.a.b.a.b	ENSGT00950000183040.A.b.g
Atlantic herring	MODERN SPECIES	14	snapc3 (ENSCHAG00000027847)	psip1a (ENSCHAG00000027848)	bnc2 (ENSCHAG00000027849)	CNTLN (ENSCHAG00000002484)	ENSCHAG00000002619	ENSCHAG00000002796	ENSCHAG00000002892	trmo (ENSCHAG00000003426)	anp32b (ENSCHAG00000003481)	coro2aa (ENSCHAG00000003554)	slit2 (ENSCHAG00000004923)	ENSCHAG00000013578	ENSCHAG00000013715	ENSCHAG00000013784	ENSCHAG00000016781	DCTN6 (ENSCHAG00000016796) #22	RBPMS (ENSCHAG00000016837) #23	gtf2e2 (ENSCHAG00000016838) #25	smim18 (ENSCHAG00000016942) #24	FHIP1A (ENSCHAG00000016952)	gatb (ENSCHAG00000016979)	dctpp1 (ENSCHAG00000017533)	ENSCHAG00000017552	FBXW7 (ENSCHAG00000017560)	ENSCHAG00000018069	tmem154 (ENSCHAG00000018096)	TLR2 (ENSCHAG00000018108)	TMEM131L (ENSCHAG00000018111)	mnd1 (ENSCHAG00000018130)	trim2a (ENSCHAG00000018191)	FHDC1 (ENSCHAG00000018368)
Osteoglossocephalai	ANCESTRAL SPECIES	228			ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000168167	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00950000182886.a.b	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00390000001491.a	ENSGT00390000010434.a	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d
Clupeocephala	ANCESTRAL SPECIES	226						ENSGT00940000161707.a.b	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00390000001491.a	ENSGT00390000010434.a	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.b	ENSGT00940000161707.a.a	ENSGT00390000004855	ENSGT00390000015386.a	ENSGT00940000164407.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	80	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010
Acanthomorphata	ANCESTRAL SPECIES	74	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00940000155586.A	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00940000155586.A	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00940000155586.A	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Siamese fighting fish	MODERN SPECIES	10	DOK7 (ENSBSLG00000011946)	HGFAC (ENSBSLG00000012056)	ENSBSLG00000012220	ENSBSLG00000012259	msantd1 (ENSBSLG00000012264)	dtx4a (ENSBSLG00000012268)	coro1b (ENSBSLG00000000171)	osbp (ENSBSLG00000000321)	ACY3 (ENSBSLG00000000424)	cldnd1a (ENSBSLG00000000449)	ENSBSLG00000000582	ENSBSLG00000000606	mfsd8 (ENSBSLG00000000635)	ENSBSLG00000000651	SGCZ (ENSBSLG00000000669)	ENSBSLG00000000686 #22	RBPMS (ENSBSLG00000000706) #23	FABP2 (ENSBSLG00000000720)	DMRTA1 (ENSBSLG00000000722)	ENSBSLG00000000731	elavl2 (ENSBSLG00000000766)	CAAP1 (ENSBSLG00000001197)	ENSBSLG00000001323	ADGRL3 (ENSBSLG00000001907)	ENSBSLG00000002092	MPDZ (ENSBSLG00000002122)	LURAP1L (ENSBSLG00000003235)	PTPRD (ENSBSLG00000004441)	ENSBSLG00000015352	USP53 (ENSBSLG00000015366)	myoz2a (ENSBSLG00000015413)
Climbing perch	MODERN SPECIES	9	ENSATEG00000018894	ENSATEG00000027693	ENSATEG00000018862	ENSATEG00000028499	ENSATEG00000022633	ENSATEG00000018818	ENSATEG00000018832	ENSATEG00000018803	ENSATEG00000018782	ENSATEG00000018729	ENSATEG00000018746	ENSATEG00000018405	ENSATEG00000018344	ENSATEG00000018302	ENSATEG00000018273	ENSATEG00000018250 #22	ENSATEG00000018184 #23	ENSATEG00000018157	DMRTA1 (ENSATEG00000018104)	ENSATEG00000027806	ENSATEG00000018073	CAAP1 (ENSATEG00000018064)	ENSATEG00000017971	ENSATEG00000028927	ENSATEG00000017807	MPDZ (ENSATEG00000017540)	ENSATEG00000026345	LURAP1L (ENSATEG00000017466)	TYRP1 (ENSATEG00000017446)	PTPRD (ENSATEG00000017283)	USP53 (ENSATEG00000017245)
Zig-zag eel	MODERN SPECIES	9	HMX1 (ENSMAMG00000003880)	ADRA2C (ENSMAMG00000003890)	DOK7 (ENSMAMG00000003907)	HGFAC (ENSMAMG00000003958)	ENSMAMG00000004013	msantd1 (ENSMAMG00000004077)	ENSMAMG00000004087	coro1b (ENSMAMG00000004143)	ENSMAMG00000004181	ENSMAMG00000025189	ENSMAMG00000025393	ENSMAMG00000026435	ENSMAMG00000004270	ENSMAMG00000004311	ENSMAMG00000004328	ENSMAMG00000004366 #22	ENSMAMG00000004604 #23	ENSMAMG00000004624	DMRTA1 (ENSMAMG00000004643)	ENSMAMG00000004674	ENSMAMG00000004806	ENSMAMG00000004829	CAAP1 (ENSMAMG00000004841)	ENSMAMG00000004862	ENSMAMG00000005041	MPDZ (ENSMAMG00000005182)	LURAP1L (ENSMAMG00000005271)	TYRP1 (ENSMAMG00000005278)	PTPRD (ENSMAMG00000005311)	USP53 (ENSMAMG00000005390)	myoz2a (ENSMAMG00000005400)
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
Tongue sole	MODERN SPECIES		SLC2A4 (ENSCSEG00000002592)	ENSCSEG00000002605	ENSCSEG00000002615	ENSCSEG00000002622	capgb (ENSCSEG00000002627)	POLR2A (ENSCSEG00000002635)	ENSCSEG00000002677	NEURL4 (ENSCSEG00000002694)	ENSCSEG00000002726	ENSCSEG00000002727	ENSCSEG00000002731	ENSCSEG00000002737	mfsd8 (ENSCSEG00000002741)	ENSCSEG00000002755	SGCZ (ENSCSEG00000002769)	ENSCSEG00000002774 #22	RBPMS (ENSCSEG00000002777) #23	FABP2 (ENSCSEG00000002784)	DMRTA1 (ENSCSEG00000002789)	ENSCSEG00000002803	ENSCSEG00000002815	ENSCSEG00000002817	ENSCSEG00000002823	supt7l (ENSCSEG00000002826)	ENSCSEG00000002831	ENSCSEG00000002833	mrpl33 (ENSCSEG00000002845)	rbks (ENSCSEG00000002838)	babam2 (ENSCSEG00000002849)	fosl2 (ENSCSEG00000002855)	kcns3a (ENSCSEG00000002858)
Turbot	MODERN SPECIES	11	HGFAC (ENSSMAG00000009658)	ENSSMAG00000009676	msantd1 (ENSSMAG00000009767)	ENSSMAG00000009774	coro1b (ENSSMAG00000009807)	ENSSMAG00000009855	ENSSMAG00000009878	ENSSMAG00000009891	ENSSMAG00000033283	ENSSMAG00000011064	ENSSMAG00000035603	ENSSMAG00000011023	ENSSMAG00000010999	ENSSMAG00000010960	ENSSMAG00000010942	ENSSMAG00000010905 #22	ENSSMAG00000010871 #23	ENSSMAG00000010853	DMRTA1 (ENSSMAG00000010840)	ENSSMAG00000010774	ENSSMAG00000010745	CAAP1 (ENSSMAG00000010726)	ENSSMAG00000010548	ENSSMAG00000010310	MPDZ (ENSSMAG00000010226)	LURAP1L (ENSSMAG00000010216)	TYRP1 (ENSSMAG00000010205)	PTPRD (ENSSMAG00000010085)	ENSSMAG00000010060	myoz2a (ENSSMAG00000010051)	SYNPO2 (ENSSMAG00000009992)
Carangaria_A	ANCESTRAL SPECIES	26	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b
Barramundi perch	MODERN SPECIES	430										ENSLCAG00010022843	ENSLCAG00010022841	ENSLCAG00010022838	mfsd8 (ENSLCAG00010022833)	ENSLCAG00010022828	SGCZ (ENSLCAG00010022825)	DCTN6 (ENSLCAG00010022819) #22	RBPMS (ENSLCAG00010022813) #23	FABP2 (ENSLCAG00010022807)	DMRTA1 (ENSLCAG00010022805)	ENSLCAG00010022802
Seriola	ANCESTRAL SPECIES	66	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b
Greater amberjack	MODERN SPECIES	262											ENSSDUG00000011088	ENSSDUG00000011074	mfsd8 (ENSSDUG00000011010)	ENSSDUG00000010976	SGCZ (ENSSDUG00000010950)	ENSSDUG00000010926 #22	RBPMS (ENSSDUG00000010894) #23	FABP2 (ENSSDUG00000010879)	DMRTA1 (ENSSDUG00000010869)	ENSSDUG00000010807
Yellowtail amberjack	MODERN SPECIES	3207	DOK7 (ENSSLDG00000012457)	HGFAC (ENSSLDG00000012489)	ENSSLDG00000012538	msantd1 (ENSSLDG00000012576)	dtx4a (ENSSLDG00000012598)	coro1b (ENSSLDG00000012652)	osbp (ENSSLDG00000012683)	ACY3 (ENSSLDG00000012711)	cldnd1a (ENSSLDG00000012728)	ENSSLDG00000012740	ENSSLDG00000012763	ENSSLDG00000012794	mfsd8 (ENSSLDG00000012810)	ENSSLDG00000012846	SGCZ (ENSSLDG00000012868)	ENSSLDG00000012895 #22	RBPMS (ENSSLDG00000012916) #23	FABP2 (ENSSLDG00000012938)	ENSSLDG00000012977	DMRTA1 (ENSSLDG00000013035)
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Tetraodontidae	ANCESTRAL SPECIES	29	ENSGT00940000161707.a.b	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00390000017010	ENSGT00940000155527.j.a	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000160460	ENSGT00950000183137.b.a
Fugu	MODERN SPECIES	20	ADRA2C (ENSTRUG00000023439)	DOK7 (ENSTRUG00000023124)	HGFAC (ENSTRUG00000010219)	ENSTRUG00000009988	msantd1 (ENSTRUG00000009975)	dtx4a (ENSTRUG00000009781)	coro1b (ENSTRUG00000009539)	osbp (ENSTRUG00000009096)	ENSTRUG00000009026	cldnd1a (ENSTRUG00000008926)	ENSTRUG00000028527	ENSTRUG00000000063	mfsd8 (ENSTRUG00000000059)	ENSTRUG00000000057	SGCZ (ENSTRUG00000027866)	DCTN6 (ENSTRUG00000000046) #22	RBPMS (ENSTRUG00000000041) #23	ENSTRUG00000000040	dmrta1 (ENSTRUG00000027628)	elavl2 (ENSTRUG00000030581)	elavl2 (ENSTRUG00000007867)	ENSTRUG00000031453	CAAP1 (ENSTRUG00000007809)	ADGRL3 (ENSTRUG00000002392)	LURAP1L (ENSTRUG00000020323)	TYRP1 (ENSTRUG00000012615)	PTPRD (ENSTRUG00000008887)	ENSTRUG00000033349	ENSTRUG00000031970	USP53 (ENSTRUG00000025974)	myoz2a (ENSTRUG00000008669)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004125	cldn11b (ENSTNIG00000004126)	ENSTNIG00000004127	cul1a (ENSTNIG00000002561)	scn5lab (ENSTNIG00000006684)	ASPH (ENSTNIG00000006685)	ENSTNIG00000006686	riok3 (ENSTNIG00000001855)	rmc1 (ENSTNIG00000004963)	RREB1 (ENSTNIG00000004962)	ENSTNIG00000003769	ENSTNIG00000000641	mfsd8 (ENSTNIG00000003770)	ENSTNIG00000001154	ENSTNIG00000001618	ENSTNIG00000003203 #22	ENSTNIG00000003204	sumo1 (ENSTNIG00000003205)	DMRTA1 (ENSTNIG00000003206)	ENSTNIG00000019442	elavl2 (ENSTNIG00000011312)	CAAP1 (ENSTNIG00000011313)	ENSTNIG00000011314	ADGRL3 (ENSTNIG00000011315)	MPDZ (ENSTNIG00000011316)	LURAP1L (ENSTNIG00000011317)	TYRP1 (ENSTNIG00000011318)	PTPRD (ENSTNIG00000011319)	USP53 (ENSTNIG00000011320)	myoz2a (ENSTNIG00000011321)	SYNPO2 (ENSTNIG00000011322)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
European seabass	MODERN SPECIES	16	coro1b (ENSDLAG00005007458)	ENSDLAG00005007235	ENSDLAG00005007211	ENSDLAG00005027994	ENSDLAG00005031774	ENSDLAG00005007179	ENSDLAG00005028077	ENSDLAG00005031862	ENSDLAG00005021021	ENSDLAG00005029964	ENSDLAG00005029452	ENSDLAG00005007130	ENSDLAG00005030123	ENSDLAG00005006708	ENSDLAG00005032432	ENSDLAG00005006622 #22	ENSDLAG00005032693 #23	ENSDLAG00005034801	DMRTA1 (ENSDLAG00005006574)	ENSDLAG00005006521	ENSDLAG00005028286	CAAP1 (ENSDLAG00005006023)	ENSDLAG00005025425	ENSDLAG00005024755	MPDZ (ENSDLAG00005023845)	ENSDLAG00005031040	ENSDLAG00005023772	ENSDLAG00005023769	PTPRD (ENSDLAG00005022790)	USP53 (ENSDLAG00005022719)	myoz2a (ENSDLAG00005027006)
Large yellow croaker	MODERN SPECIES	485	ADRA2C (ENSLCRG00005004910)	DOK7 (ENSLCRG00005004903)	HGFAC (ENSLCRG00005004854)	ENSLCRG00005004738	msantd1 (ENSLCRG00005004714)	dtx4a (ENSLCRG00005004676)	coro1b (ENSLCRG00005004626)	osbp (ENSLCRG00005004524)	cldnd1a (ENSLCRG00005004368)	ENSLCRG00005004322	ENSLCRG00005004309	ENSLCRG00005004274	mfsd8 (ENSLCRG00005004205)	ENSLCRG00005004162	SGCZ (ENSLCRG00005004148)	DCTN6 (ENSLCRG00005004004) #22	RBPMS (ENSLCRG00005003935) #23	FABP2 (ENSLCRG00005003931)	DMRTA1 (ENSLCRG00005003925)	ENSLCRG00005003892	ENSLCRG00005003835	nlgn2a (ENSLCRG00005003705)	tmem256 (ENSLCRG00005003642)	tmem102 (ENSLCRG00005003635)	fgf11a (ENSLCRG00005003609)	ENSLCRG00005003600	chrnb1 (ENSLCRG00005003556)	chrnb1l (ENSLCRG00005003467)	cldn7a (ENSLCRG00005003412)	ENSLCRG00005003410	ponzr3 (ENSLCRG00005003404)
Gilthead seabream	MODERN SPECIES	1	dtx4a (ENSSAUG00010014794)	coro1b (ENSSAUG00010014799)	osbp (ENSSAUG00010014848)	ACY3 (ENSSAUG00010015446)	cldnd1a (ENSSAUG00010015449)	ENSSAUG00010015455	ENSSAUG00010015471	ENSSAUG00010015474	ENSSAUG00010001304	ENSSAUG00010001321	ENSSAUG00010001337	ENSSAUG00010001343	mfsd8 (ENSSAUG00010001388)	ENSSAUG00010001789	SGCZ (ENSSAUG00010001811)	DCTN6 (ENSSAUG00010001835) #22	RBPMS (ENSSAUG00010001847) #23	FABP2 (ENSSAUG00010001856)	DMRTA1 (ENSSAUG00010001862)	ENSSAUG00010001874	elavl2 (ENSSAUG00010001898)	CAAP1 (ENSSAUG00010002020)	ENSSAUG00010002251	ADGRL3 (ENSSAUG00010007883)	MPDZ (ENSSAUG00010013816)	LURAP1L (ENSSAUG00010018021)	TYRP1 (ENSSAUG00010018023)	PTPRD (ENSSAUG00010018340)	USP53 (ENSSAUG00010026657)	myoz2a (ENSSAUG00010026662)	SYNPO2 (ENSSAUG00010026663)
Perciformes	ANCESTRAL SPECIES	19	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
Lumpfish	MODERN SPECIES	9	ACY3 (ENSCLMG00005018155)	ENSCLMG00005018156	ENSCLMG00005018197	ENSCLMG00005004933	ENSCLMG00005005608	ENSCLMG00005005646	cldnd1a (ENSCLMG00005006004)	ENSCLMG00005006005	ENSCLMG00005006006	ENSCLMG00005006007	ENSCLMG00005006010	ENSCLMG00005006011	mfsd8 (ENSCLMG00005006012)	ENSCLMG00005006014	SGCZ (ENSCLMG00005006017)	ENSCLMG00005006019 #22	RBPMS (ENSCLMG00005006022) #23	FABP2 (ENSCLMG00005006029)	DMRTA1 (ENSCLMG00005006031)	ENSCLMG00005006032	ELAVL2 (ENSCLMG00005006033)	ENSCLMG00005006110	ENSCLMG00005006114	ADGRL3 (ENSCLMG00005006125)	ENSCLMG00005006356	ENSCLMG00005006360	LURAP1L (ENSCLMG00005006362)	TYRP1 (ENSCLMG00005006363)	PTPRD (ENSCLMG00005006368)	ENSCLMG00005006450	USP53 (ENSCLMG00005006452)
Stickleback	MODERN SPECIES	7	dtx4a (ENSGACG00000019427)	ENSGACG00000019428	coro1b (ENSGACG00000019429)	cldnd1a (ENSGACG00000019430)	ENSGACG00000019431	ENSGACG00000019432	ENSGACG00000019433	ZFP91 (ENSGACG00000019434)	ENSGACG00000019435	ENSGACG00000019436	ENSGACG00000019438	mfsd8 (ENSGACG00000019443)	ENSGACG00000019450	ENSGACG00000019456	SGCZ (ENSGACG00000019458)	ENSGACG00000019464 #22	RBPMS (ENSGACG00000019471) #23	FABP2 (ENSGACG00000019474)	DMRTA1 (ENSGACG00000019482)	ENSGACG00000019483	elavl2 (ENSGACG00000019484)	CAAP1 (ENSGACG00000019489)	ENSGACG00000019493	ADGRL3 (ENSGACG00000019498)	MPDZ (ENSGACG00000019499)	LURAP1L (ENSGACG00000019502)	TYRP1 (ENSGACG00000019503)	PTPRD (ENSGACG00000019528)	USP53 (ENSGACG00000019533)	myoz2a (ENSGACG00000019535)	SYNPO2 (ENSGACG00000019536)
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00980000203174	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Pike perch	MODERN SPECIES	147	msantd1 (ENSSLUG00000005733)	dtx4a (ENSSLUG00000005740)	ENSSLUG00000005745	coro1b (ENSSLUG00000005757)	osbp (ENSSLUG00000005913)	ENSSLUG00000006610	ACY3 (ENSSLUG00000006653)	cldnd1a (ENSSLUG00000007039)	ENSSLUG00000007048	ENSSLUG00000007060	ENSSLUG00000007066	mfsd8 (ENSSLUG00000007106)	ENSSLUG00000007331	ENSSLUG00000007341	SGCZ (ENSSLUG00000007344)	DCTN6 (ENSSLUG00000007355) #22	RBPMS (ENSSLUG00000007372) #23	FABP2 (ENSSLUG00000007422)	DMRTA1 (ENSSLUG00000007427)	ENSSLUG00000007432
Ballan wrasse	MODERN SPECIES	255									ENSLBEG00000028110	ENSLBEG00000028105	ENSLBEG00000028101	ENSLBEG00000028096	mfsd8 (ENSLBEG00000028073)	ENSLBEG00000028046	SGCZ (ENSLBEG00000028031)	DCTN6 (ENSLBEG00000028012) #22	RBPMS (ENSLBEG00000027989) #23	FABP2 (ENSLBEG00000027969)	DMRTA1 (ENSLBEG00000027961)	ENSLBEG00000027944	elavl2 (ENSLBEG00000027924)	CAAP1 (ENSLBEG00000027909)	ENSLBEG00000027877	ENSLBEG00000027851
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00940000155586.A	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00940000155586.A	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Pomacentridae	ANCESTRAL SPECIES	28	ENSGT00940000163711.b.e.b.a.b	ENSGT01050000244843.c.a.b.a.a.b.a.a	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b	ENSGT01030000234592.A.a.b.j	ENSGT01030000234592.A.a.b.i.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a.f	ENSGT00940000154658.a.e	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT01050000244843.c.a.b.a.a.b.a.a	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b.k.a	ENSGT01030000234592.A.a.b.j.n	ENSGT01030000234592.A.a.b.i.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT01090000260059.a.b.b.b.a.d.a.b	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a.f	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Amphiprion	ANCESTRAL SPECIES	96	ENSGT01050000244843.c.a.b.a.a.b.a.a	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b.k.a	ENSGT01030000234592.A.a.b.j.n	ENSGT01030000234592.A.a.b.i.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT01090000260059.a.b.b.b.a.d.a.b	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a.f	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Clown anemonefish	MODERN SPECIES	629					CORO2A (ENSAOCG00000008045)	zgc:158445 (ENSAOCG00000008016)	tec (ENSAOCG00000007988)	ENSAOCG00000007930	ENSAOCG00000007890	abcg2a (ENSAOCG00000007876)	ENSAOCG00000007852	ENSAOCG00000007839	mfsd8 (ENSAOCG00000007820)	ENSAOCG00000000431	SGCZ (ENSAOCG00000007780)	ENSAOCG00000007764 #22	RBPMS (ENSAOCG00000007731) #23	FABP2 (ENSAOCG00000007719)
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000023892	ENSAPEG00000023872	ENSAPEG00000023860	CORO2A (ENSAPEG00000023850)	ENSAPEG00000023844	ENSAPEG00000023828	tec (ENSAPEG00000023770)	ENSAPEG00000023733	ENSAPEG00000023702	ENSAPEG00000023676	abcg2a (ENSAPEG00000023653)	ENSAPEG00000023637	mfsd8 (ENSAPEG00000023620)	ENSAPEG00000023603	SGCZ (ENSAPEG00000023566)	ENSAPEG00000023550 #22	RBPMS (ENSAPEG00000023543) #23	FABP2 (ENSAPEG00000023534)	DMRTA1 (ENSAPEG00000023525)	ENSAPEG00000023497	elavl2 (ENSAPEG00000023474)	CAAP1 (ENSAPEG00000023464)	ENSAPEG00000023386	ENSAPEG00000023340	ENSAPEG00000023327	ENSAPEG00000023314	ADGRL3 (ENSAPEG00000023284)	ENSAPEG00000023255	ENSAPEG00000023237	ENSAPEG00000023231	ENSAPEG00000023222
Spiny chromis	MODERN SPECIES	111	ENSAPOG00000023054	ENSAPOG00000023010	ENSAPOG00000022996	CORO2A (ENSAPOG00000022981)	ENSAPOG00000022953	ENSAPOG00000022923	tec (ENSAPOG00000022888)	ENSAPOG00000022839	ENSAPOG00000022651	abcg2a (ENSAPOG00000022542)	ENSAPOG00000022526	ENSAPOG00000022499	mfsd8 (ENSAPOG00000022463)	ENSAPOG00000022403	SGCZ (ENSAPOG00000022386)	ENSAPOG00000022362 #22	RBPMS (ENSAPOG00000022304) #23	FABP2 (ENSAPOG00000022284)	DMRTA1 (ENSAPOG00000000631)	ENSAPOG00000022213	elavl2 (ENSAPOG00000022121)	CAAP1 (ENSAPOG00000022103)
Bicolor damselfish	MODERN SPECIES	932					ENSSPAG00000005291	tec (ENSSPAG00000005257)	ENSSPAG00000005136	ENSSPAG00000005117	ENSSPAG00000005019	ENSSPAG00000004993	abcg2a (ENSSPAG00000004957)	ENSSPAG00000004945	mfsd8 (ENSSPAG00000004887)	ENSSPAG00000004843	SGCZ (ENSSPAG00000004832)	ENSSPAG00000004804 #22	ENSSPAG00000004798	RBPMS (ENSSPAG00000004777) #23	FABP2 (ENSSPAG00000004757)	ENSSPAG00000004740	ENSSPAG00000004714
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Lyretail cichlid	MODERN SPECIES	446											ZFP91 (ENSNBRG00000010534)	ENSNBRG00000010513	ENSNBRG00000010487	mfsd8 (ENSNBRG00000010425)	SGCZ (ENSNBRG00000010366)	ENSNBRG00000010333 #22	FABP2 (ENSNBRG00000010321)	DMRTA1 (ENSNBRG00000010312)	ENSNBRG00000010299	elavl2 (ENSNBRG00000010284)	CAAP1 (ENSNBRG00000010153)	ENSNBRG00000010113	ENSNBRG00000010023	ADGRL3 (ENSNBRG00000009989)
Haplochromini	ANCESTRAL SPECIES	31	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Burton s mouthbrooder	MODERN SPECIES	393															ENSHBUG00000005832	ENSHBUG00000005870 #22	RBPMS (ENSHBUG00000005888) #23	FABP2 (ENSHBUG00000005917)	DMRTA1 (ENSHBUG00000000928)	ENSHBUG00000005942	elavl2 (ENSHBUG00000005968)	CAAP1 (ENSHBUG00000005978)	ENSHBUG00000006066	ENSHBUG00000006091	ADGRL3 (ENSHBUG00000006141)	MPDZ (ENSHBUG00000006186)	LURAP1L (ENSHBUG00000001020)	TYRP1 (ENSHBUG00000006209)
Haplochromini_A	ANCESTRAL SPECIES	35	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00940000156393.a.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00990000203806	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Zebra mbuna	MODERN SPECIES	1106	HGFAC (ENSMZEG00005000176)	ENSMZEG00005000199	ENSMZEG00005000279	msantd1 (ENSMZEG00005000288)	dtx4a (ENSMZEG00005000295)	coro1b (ENSMZEG00005000359)	osbp (ENSMZEG00005000405)	ACY3 (ENSMZEG00005000421)	cldnd1a (ENSMZEG00005000455)	ENSMZEG00005000478	ENSMZEG00005000495	ENSMZEG00005000528	mfsd8 (ENSMZEG00005000569)	ENSMZEG00005000585	SGCZ (ENSMZEG00005000612)	ENSMZEG00005000647 #22	RBPMS (ENSMZEG00005000698) #23	FABP2 (ENSMZEG00005000743)	DMRTA1 (ENSMZEG00005000752)	ENSMZEG00005000772	elavl2 (ENSMZEG00005000778)	CAAP1 (ENSMZEG00005000801)	ENSMZEG00005000817	ADGRL3 (ENSMZEG00005001028)	MPDZ (ENSMZEG00005001094)	LURAP1L (ENSMZEG00005001183)	TYRP1 (ENSMZEG00005001187)	ENSMZEG00005001208	PTPRD (ENSMZEG00005001243)	USP53 (ENSMZEG00005001507)	myoz2a (ENSMZEG00005001520)
Eastern happy	MODERN SPECIES	15	osbp (ENSACLG00000003306)	ACY3 (ENSACLG00000003264)	cldnd1a (ENSACLG00000003237)	ENSACLG00000003232	ENSACLG00000003227	ENSACLG00000003215	ENSACLG00000003202	ENSACLG00000003175	ENSACLG00000003158	ENSACLG00000003125	ENSACLG00000003117	ENSACLG00000003069	mfsd8 (ENSACLG00000003047)	ENSACLG00000003019	SGCZ (ENSACLG00000003007)	ENSACLG00000002952 #22	RBPMS (ENSACLG00000002926) #23	FABP2 (ENSACLG00000002847)	DMRTA1 (ENSACLG00000002823)	ENSACLG00000002778	elavl2 (ENSACLG00000002715)	CAAP1 (ENSACLG00000002613)	ENSACLG00000002328	ENSACLG00000002311	ADGRL3 (ENSACLG00000002240)	MPDZ (ENSACLG00000002011)	LURAP1L (ENSACLG00000001998)	TYRP1 (ENSACLG00000001942)	PTPRD (ENSACLG00000001550)	USP53 (ENSACLG00000001439)	myoz2a (ENSACLG00000001413)
P. nyererei	MODERN SPECIES	566											ENSPNYG00000001010	ENSPNYG00000001021	mfsd8 (ENSPNYG00000001036)	ENSPNYG00000001047	SGCZ (ENSPNYG00000001064)	ENSPNYG00000001127 #22	RBPMS (ENSPNYG00000001172) #23	FABP2 (ENSPNYG00000001222)	DMRTA1 (ENSPNYG00000001422)	ENSPNYG00000001445	elavl2 (ENSPNYG00000001514)	CAAP1 (ENSPNYG00000001885)
Nile tilapia	MODERN SPECIES	15	osbp (ENSONIG00000001784)	ACY3 (ENSONIG00000001782)	cldnd1a (ENSONIG00000001780)	ENSONIG00000028801	ENSONIG00000040743	ENSONIG00000037773	ENSONIG00000040221	ENSONIG00000042623	ENSONIG00000032399	ENSONIG00000028295	ENSONIG00000007536	ENSONIG00000032206	mfsd8 (ENSONIG00000007537)	ENSONIG00000007538	SGCZ (ENSONIG00000007542)	ENSONIG00000007544 #22	RBPMS (ENSONIG00000007546) #23	FABP2 (ENSONIG00000007548)	ENSONIG00000027429	ENSONIG00000040635	ENSONIG00000038581	elavl2 (ENSONIG00000007552)	ENSONIG00000033798	ENSONIG00000030865	ENSONIG00000007557	ENSONIG00000028332	ADGRL3 (ENSONIG00000007571)	MPDZ (ENSONIG00000007574)	LURAP1L (ENSONIG00000007582)	TYRP1 (ENSONIG00000007584)	PTPRD (ENSONIG00000007588)
Midas cichlid	MODERN SPECIES	793										ZFP91 (ENSACIG00000011617)	ENSACIG00000011601	ENSACIG00000011583	mfsd8 (ENSACIG00000011553)	ENSACIG00000011477	SGCZ (ENSACIG00000011434)	ENSACIG00000011410 #22	RBPMS (ENSACIG00000011395) #23	FABP2 (ENSACIG00000011389)	DMRTA1 (ENSACIG00000011367)	ENSACIG00000011339	elavl2 (ENSACIG00000010855)	CAAP1 (ENSACIG00000010733)	ENSACIG00000010635	ADGRL3 (ENSACIG00000010583)	MPDZ (ENSACIG00000010482)	LURAP1L (ENSACIG00000010470)	TYRP1 (ENSACIG00000010444)	PTPRD (ENSACIG00000010385)	USP53 (ENSACIG00000010321)	myoz2a (ENSACIG00000010197)	SYNPO2 (ENSACIG00000010161)
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00940000159778.a	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Oryzias	ANCESTRAL SPECIES	21	ENSGT00390000010169	ENSGT00940000160323.a.a	ENSGT00940000167281	ENSGT00940000157623	ENSGT00940000160414.c	ENSGT00940000163776.a.a	ENSGT00940000159796.a.b	ENSGT00890000139482.a	ENSGT00940000155378.c.b	ENSGT00390000002231.b	ENSGT01060000253413	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00940000167281	ENSGT00940000157623	ENSGT00940000160414.c	ENSGT00940000163776.a.a	ENSGT00940000159796.a.b	ENSGT00890000139482.a	ENSGT00940000155378.c.b	ENSGT00390000002231.b	ENSGT01040000240385.A.a.b.a	ENSGT00940000163911.a.a.b.a.a.a.b.a.a	ENSGT00940000163911.a.a.b.a.a.a.b.a.b	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
Indian medaka	MODERN SPECIES	19	ENSOMEG00000004667	ENSOMEG00000004674	ENSOMEG00000004689	ENSOMEG00000004727	ENSOMEG00000004749	ENSOMEG00000004761	ENSOMEG00000004772	ENSOMEG00000004796	ENSOMEG00000004825	ENSOMEG00000004842	ENSOMEG00000004862	ENSOMEG00000004901	ENSOMEG00000004934	syt4 (ENSOMEG00000004955)	SGCZ (ENSOMEG00000004970)	ENSOMEG00000004999 #22	RBPMS (ENSOMEG00000005044) #23	DMRTA1 (ENSOMEG00000005064)	ENSOMEG00000005083	ENSOMEG00000005141	elavl2 (ENSOMEG00000005178)	CAAP1 (ENSOMEG00000005226)	ENSOMEG00000005308	ADGRL3 (ENSOMEG00000005355)	MPDZ (ENSOMEG00000005411)	LURAP1L (ENSOMEG00000005431)	TYRP1 (ENSOMEG00000005449)	PTPRD (ENSOMEG00000005568)	ENSOMEG00000005608	myoz2a (ENSOMEG00000005628)	ENSOMEG00000005638
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000024071	tdrd7b (ENSOJAG00000024066)	dctn1a (ENSOJAG00000024024)	fam113 (ENSOJAG00000023986)	ENSOJAG00000023985	ENSOJAG00000023977	ENSOJAG00000023975	ENSOJAG00000023974	ENSOJAG00000023973	ENSOJAG00000023968	ENSOJAG00000023963	ENSOJAG00000023959	ENSOJAG00000023952	syt4 (ENSOJAG00000023949)	SGCZ (ENSOJAG00000023942)	DCTN6 (ENSOJAG00000023939) #22	RBPMS (ENSOJAG00000023935) #23	ENSOJAG00000023932	DMRTA1 (ENSOJAG00000023929)	ENSOJAG00000023928	elavl2 (ENSOJAG00000023923)	CAAP1 (ENSOJAG00000023918)	ENSOJAG00000023915	ENSOJAG00000023853	ADGRL3 (ENSOJAG00000023481)	LURAP1L (ENSOJAG00000023101)	TYRP1 (ENSOJAG00000023096)	ENSOJAG00000023091	PTPRD (ENSOJAG00000017841)	USP53 (ENSOJAG00000017053)	myoz2a (ENSOJAG00000017040)
Oryzias_a	ANCESTRAL SPECIES	27									ENSGT00940000163911.a.a.a.s	ENSGT00940000163911.a.a.b.a.a.a.b.a.b.b	ENSGT00940000174504.B	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a.h	ENSGT00940000154658.a.g	ENSGT00980000202414	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000026063	ENSORLG00000026632	ENSORLG00000022447	ENSORLG00000028665	ENSORLG00000004011	ENSORLG00000027677	ENSORLG00000023331	ENSORLG00000004028	ENSORLG00000004020	ENSORLG00000004043	ENSORLG00000004069	ENSORLG00000004084	ENSORLG00000023575	syt4 (ENSORLG00000004098)	ENSORLG00000004115	ENSORLG00000026244 #22	RBPMS (ENSORLG00000004135) #23	ENSORLG00000004146	DMRTA1 (ENSORLG00000004153)	ENSORLG00000004157	ENSORLG00000027845	ELAVL2 (ENSORLG00000004217)	ENSORLG00000022241	CAAP1 (ENSORLG00000004231)	ENSORLG00000027686	ENSORLG00000028831	ENSORLG00000023983	ADGRL3 (ENSORLG00000004254)	MPDZ (ENSORLG00000004290)	LURAP1L (ENSORLG00000028081)	TYRP1 (ENSORLG00000004326)
Chinese medaka	MODERN SPECIES	4599																ENSOSIG00000014375 #22
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00940000164407.a.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00540000073610.B	ENSGT00980000198603.A	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00530000067688	ENSGT00940000159031	ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00540000073610.B.e	ENSGT00540000073610.B.f	ENSGT00980000198603.A	ENSGT01070000253822.D.b.q.a.a	ENSGT01070000253822.D.b.q.a.b	ENSGT01070000253822.D.b.q.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
Poecilia	ANCESTRAL SPECIES	48						ENSGT00540000073610.B.e	ENSGT00540000073610.B.f	ENSGT00980000198603.A	ENSGT01070000253822.D.b.q.a.a.a.b	ENSGT01070000253822.D.b.q.a.b	ENSGT01070000253822.D.b.q.a.a.a.a.a	ENSGT01070000253822.D.b.q.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b.a	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
NAME_6	ANCESTRAL SPECIES	291					ENSGT00540000073610.B.e	ENSGT00540000073610.B.f	ENSGT00980000198603.A	ENSGT01070000253822.D.b.q.a.a.a.b	ENSGT01070000253822.D.b.q.a.b.b	ENSGT01070000253822.D.b.q.a.a.b.b.b	ENSGT01070000253822.D.b.q.a.a.a.a.a	ENSGT01070000253822.D.b.q.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b.a
Amazon molly	MODERN SPECIES	387												ENSPFOG00000017004	mfsd8 (ENSPFOG00000017026)	ENSPFOG00000017092	SGCZ (ENSPFOG00000017117)	DCTN6 (ENSPFOG00000017154) #22	RBPMS (ENSPFOG00000017158) #23	FABP2 (ENSPFOG00000017178)	DMRTA1 (ENSPFOG00000017190)	ENSPFOG00000023180
Sailfin molly	MODERN SPECIES	360							ENSPLAG00000011048	ENSPLAG00000011023	ENSPLAG00000011008	ENSPLAG00000010965	ENSPLAG00000010944	ENSPLAG00000010918	mfsd8 (ENSPLAG00000010880)	ENSPLAG00000010834	SGCZ (ENSPLAG00000010818)	DCTN6 (ENSPLAG00000010791) #22	RBPMS (ENSPLAG00000010767) #23	FABP2 (ENSPLAG00000010726)	DMRTA1 (ENSPLAG00000000817)	ENSPLAG00000010692
Guppy	MODERN SPECIES	448	ENSPREG00000016470	ENSPREG00000016526	pip4p1b (ENSPREG00000016538)	ENSPREG00000016569	ENSPREG00000016622	ENSPREG00000016630	ENSPREG00000016645	ENSPREG00000016653	ENSPREG00000016666	ENSPREG00000016690	ENSPREG00000016765	ENSPREG00000016791	mfsd8 (ENSPREG00000016815)	ENSPREG00000016861	SGCZ (ENSPREG00000016904)	DCTN6 (ENSPREG00000016932) #22	RBPMS (ENSPREG00000016959) #23	FABP2 (ENSPREG00000016995)	DMRTA1 (ENSPREG00000017021)	ENSPREG00000017063	elavl2 (ENSPREG00000017160)	CAAP1 (ENSPREG00000017188)	ENSPREG00000017212	ADGRL3 (ENSPREG00000017398)	ENSPREG00000017839	LURAP1L (ENSPREG00000018293)	TYRP1 (ENSPREG00000018301)	PTPRD (ENSPREG00000018440)	USP53 (ENSPREG00000018805)	myoz2a (ENSPREG00000018830)	ENSPREG00000018845
Platyfish	MODERN SPECIES	5	ENSXMAG00000023030	ENSXMAG00000015854	msantd1 (ENSXMAG00000015874)	dtx4a (ENSXMAG00000015876)	coro1b (ENSXMAG00000015892)	osbp (ENSXMAG00000015923)	ACY3 (ENSXMAG00000015936)	cldnd1a (ENSXMAG00000028728)	ENSXMAG00000026245	ENSXMAG00000012538	ENSXMAG00000012542	ENSXMAG00000012545	ENSXMAG00000021162	mfsd8 (ENSXMAG00000012556)	SGCZ (ENSXMAG00000012490)	DCTN6 (ENSXMAG00000012493) #22	RBPMS (ENSXMAG00000027637) #23	FABP2 (ENSXMAG00000027561)	DMRTA1 (ENSXMAG00000012522)	ENSXMAG00000021716	ELAVL2 (ENSXMAG00000029211)	CAAP1 (ENSXMAG00000022303)	ENSXMAG00000004781	ADGRL3 (ENSXMAG00000004882)	MPDZ (ENSXMAG00000004907)	ENSXMAG00000027724	LURAP1L (ENSXMAG00000004908)	TYRP1 (ENSXMAG00000004910)	ENSXMAG00000028029	PTPRD (ENSXMAG00000004920)	USP53 (ENSXMAG00000021530)
NAME_4	ANCESTRAL SPECIES	308											ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e
Mummichog	MODERN SPECIES	316												ENSFHEG00000009753	mfsd8 (ENSFHEG00000009958)	ENSFHEG00000009983	SGCZ (ENSFHEG00000010026)	DCTN6 (ENSFHEG00000010070) #22	RBPMS (ENSFHEG00000000618) #23	FABP2 (ENSFHEG00000010141)	DMRTA1 (ENSFHEG00000010147)	ENSFHEG00000010157	ENSFHEG00000010266	elavl2 (ENSFHEG00000010307)
Sheepshead minnow	MODERN SPECIES	278															ENSCVAG00000014354	DCTN6 (ENSCVAG00000000366) #22	RBPMS (ENSCVAG00000013975) #23	FABP2 (ENSCVAG00000013961)	DMRTA1 (ENSCVAG00000013941)	ENSCVAG00000013933	elavl2 (ENSCVAG00000013913)	ENSCVAG00000013852	ENSCVAG00000013837	rtkn2 (ENSCVAG00000013823)	ENSCVAG00000013799	hint1 (ENSCVAG00000013656)	lyrm7 (ENSCVAG00000013634)	dync2li1 (ENSCVAG00000013487)	abcg5 (ENSCVAG00000013468)	abcg8 (ENSCVAG00000013404)	ENSCVAG00000012980
Aplocheiloidei	ANCESTRAL SPECIES	65											ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.k.a	ENSGT00940000153617.B	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015002155	ENSNFUG00015002163	BX324131.3 (ENSNFUG00015002166)	DTX4 (ENSNFUG00015002177)	CORO1B (ENSNFUG00015002194)	osbp (ENSNFUG00015000130)	ACY3 (ENSNFUG00015000194)	CLDND1 (ENSNFUG00015000212)	ENSNFUG00015000224	ENSNFUG00015000233	MTPAP (ENSNFUG00015000245)	BX470141.1 (ENSNFUG00015000266)	ENSNFUG00015000281	ZNF438 (ENSNFUG00015000285)	SGCZ (ENSNFUG00015000297)	DCTN6 (ENSNFUG00015000312) #22	RBPMS (ENSNFUG00015000331) #23	FABP2 (ENSNFUG00015000342)	DMRTA1 (ENSNFUG00015000348)	PRKCSH (ENSNFUG00015000360)	elavl2 (ENSNFUG00015000395)	ENSNFUG00015000415	ENSNFUG00015000419	ENSNFUG00015000422	FP236812.4 (ENSNFUG00015000426)	ENSNFUG00015000803	LPHN3 (ENSNFUG00015002277)	ENSNFUG00015004059	ENSNFUG00015004062	MPDZ (ENSNFUG00015004270)	LURAP1L (ENSNFUG00015005421)
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005023490	ENSMMDG00005023492	msantd1 (ENSMMDG00005011307)	dtx4a (ENSMMDG00005011309)	coro1b (ENSMMDG00005011312)	osbp (ENSMMDG00005011323)	ACY3 (ENSMMDG00005011360)	cldnd1a (ENSMMDG00005011764)	ENSMMDG00005011765	ENSMMDG00005011769	ENSMMDG00005011772	ENSMMDG00005011775	mfsd8 (ENSMMDG00005011787)	ENSMMDG00005011818	SGCZ (ENSMMDG00005011821)	DCTN6 (ENSMMDG00005011824) #22	RBPMS (ENSMMDG00005011825) #23	FABP2 (ENSMMDG00005011827)	DMRTA1 (ENSMMDG00005011830)	ENSMMDG00005011836	elavl2 (ENSMMDG00005011843)	CAAP1 (ENSMMDG00005011878)	ENSMMDG00005011884	ADGRL3 (ENSMMDG00005011905)	MPDZ (ENSMMDG00005013814)	LURAP1L (ENSMMDG00005013820)	TYRP1 (ENSMMDG00005013822)	PTPRD (ENSMMDG00005013826)	USP53 (ENSMMDG00005013843)	myoz2a (ENSMMDG00005013846)	SYNPO2 (ENSMMDG00005013867)
Protacanthopterygii	ANCESTRAL SPECIES	181						ENSGT00940000156164.b	ENSGT00390000001189.b.i	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010
Salmoninae	ANCESTRAL SPECIES	189							ENSGT00390000001189.b.i.c	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01100000263491.a.b.b.c.a.b.h	ENSGT00940000167160	ENSGT00510000047760.b	ENSGT00950000182899.C.b	ENSGT00940000158194.p	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804.d
Huchen	MODERN SPECIES	4038															SGCZ (ENSHHUG00000004320)	ENSHHUG00000004385 #22	ENSHHUG00000004511 #23
Salmoninae_a	ANCESTRAL SPECIES	101		ENSGT00940000160303.a.a.a	ENSGT00940000156646.c.e	ENSGT00940000154790.a.b.c	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00940000165739.d	ENSGT00390000001189.b.i.c	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01100000263491.a.b.b.c.a.b.h	ENSGT00940000167160	ENSGT00940000169954	ENSGT00940000158194.p	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804.d	ENSGT00390000017455
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00950000182985.b.b.sc.d.a.a	ENSGT00940000166331.f	ENSGT00940000160303.a.a.a	ENSGT00940000156646.c.e	ENSGT00940000154790.a.b.c	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00390000001189.b.i.c	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01100000263491.a.b.b.c.a.b.h	ENSGT00940000167160	ENSGT00940000169954	ENSGT00940000158194.p	ENSGT00940000167021	ENSGT00390000015545	ENSGT01090000260859.b	ENSGT00940000158971	ENSGT00940000166804.d
Oncorhynchus_a	ANCESTRAL SPECIES	122			ENSGT00940000160303.a.a.a	ENSGT00940000156646.c.e	ENSGT00940000154790.a.b.c	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00390000001189.b.i.c	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01100000263491.a.b.b.c.a.b.h	ENSGT00940000167160	ENSGT00940000169954	ENSGT00940000158194.p	ENSGT00940000167021	ENSGT00390000015545	ENSGT01090000260859.b	ENSGT00940000166804.d	ENSGT00390000017455
Coho salmon	MODERN SPECIES	29	ENSOKIG00005032591	ENSOKIG00005032586	ENSOKIG00005032571	ENSOKIG00005032565	ENSOKIG00005032552	ENSOKIG00005032531	CLDND1 (ENSOKIG00005032522)	ENSOKIG00005032518	ENSOKIG00005032498	ENSOKIG00005032421	ENSOKIG00005032406	mfsd8 (ENSOKIG00005032397)	ENSOKIG00005032393	ENSOKIG00005032323	SGCZ (ENSOKIG00005032308)	DCTN6 (ENSOKIG00005031944) #22	RBPMS (ENSOKIG00005031788) #23	ENSOKIG00005031776	DMRTA1 (ENSOKIG00005031767)	ENSOKIG00005031747	ELAVL2 (ENSOKIG00005031407)	CAAP1 (ENSOKIG00005027627)	ENSOKIG00005027614	ENSOKIG00005027603	ENSOKIG00005027578	ENSOKIG00005027542	ing2 (ENSOKIG00005027519)	ENSOKIG00005027496	rwdd (ENSOKIG00005027445)	ENSOKIG00005027431	ADAM33 (ENSOKIG00005027399)
Chinook salmon	MODERN SPECIES	6	PCDH7 (ENSOTSG00005041798)	ENSOTSG00005001940	ENSOTSG00005002402	acadl (ENSOTSG00005002543)	ENSOTSG00005002924	ENSOTSG00005002935	PAQR9 (ENSOTSG00005002938)	per1b (ENSOTSG00005002942)	rell1 (ENSOTSG00005002947)	ENSOTSG00005002954	NWD2 (ENSOTSG00005002957)	cldnd1a (ENSOTSG00005002963)	ENSOTSG00005002968	ENSOTSG00005002986	SGCZ (ENSOTSG00005003004)	DCTN6 (ENSOTSG00005003016) #22	RBPMS (ENSOTSG00005003931) #23	ENSOTSG00005003938	DMRTA1 (ENSOTSG00005003939)	ENSOTSG00005003940	ELAVL2 (ENSOTSG00005003944)	ENSOTSG00005004503	ENSOTSG00005004504
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000024019	ENSOMYG00000024003	ENSOMYG00000023971	ENSOMYG00000020500	ENSOMYG00000017475	ENSOMYG00000064038	ENSOMYG00000023777	ENSOMYG00000023865	ENSOMYG00000023875	ENSOMYG00000023881	ENSOMYG00000023891	ENSOMYG00000058958	ENSOMYG00000023922	ENSOMYG00000076447	ENSOMYG00000025448	ENSOMYG00000025496 #22	ENSOMYG00000053123 #23	ENSOMYG00000025565	DMRTA1 (ENSOMYG00000025579)	ENSOMYG00000076659	ENSOMYG00000025592	ENSOMYG00000025614	CAAP1 (ENSOMYG00000025636)	ENSOMYG00000025645	ENSOMYG00000025660	ENSOMYG00000025698	ENSOMYG00000025723	ENSOMYG00000025732	rwdd (ENSOMYG00000023754)	ENSOMYG00000075246	ENSOMYG00000075650
Salmo	ANCESTRAL SPECIES	49		ENSGT00940000154790.a.b.c	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00940000165739.d	ENSGT00950000182924.A.a.e	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00990000213768	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT01100000263491.a.b.b.c.a.b.h	ENSGT00940000166428	ENSGT00510000047760.b	ENSGT00950000182899.C.b	ENSGT00940000158194.p	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804.d
Atlantic salmon	MODERN SPECIES	26	prox3 (ENSSSAG00000121496)	ENSSSAG00000107439	ENSSSAG00000096306	ENSSSAG00000083133	ovol1a (ENSSSAG00000089795)	ENSSSAG00000004107	ENSSSAG00000107874	ENSSSAG00000004487	ENSSSAG00000004293	ENSSSAG00000004444	ENSSSAG00000004327	ENSSSAG00000004284	ENSSSAG00000004254	ENSSSAG00000004126	ENSSSAG00000002771	ENSSSAG00000002712 #22	rbpms (ENSSSAG00000002676) #23	ENSSSAG00000116118	ENSSSAG00000002671	dmrta1 (ENSSSAG00000002664)	glu2b (ENSSSAG00000002648)	elavl2 (ENSSSAG00000002324)	ENSSSAG00000094154	CAAP1 (ENSSSAG00000119180)	ENSSSAG00000115843	ENSSSAG00000003008	BOLA2 (ENSSSAG00000003003)	cd68 (ENSSSAG00000002993)	ing2 (ENSSSAG00000002986)	ENSSSAG00000002955	rwdd (ENSSSAG00000002920)
River trout	MODERN SPECIES	38	ENSSTUG00000005252	prox3 (ENSSTUG00000005273)	tmem179ba (ENSSTUG00000005288)	ENSSTUG00000005311	ENSSTUG00000005318	ovol1a (ENSSTUG00000005324)	ENSSTUG00000005331	cldnd1a (ENSSTUG00000005348)	ENSSTUG00000005358	ENSSTUG00000005371	ENSSTUG00000005391	ENSSTUG00000005610	ENSSTUG00000005651	ENSSTUG00000001107	SGCZ (ENSSTUG00000001152)	DCTN6 (ENSSTUG00000001195) #22	RBPMS (ENSSTUG00000001353) #23	ENSSTUG00000001363	DMRTA1 (ENSSTUG00000001371)	ENSSTUG00000001382	ELAVL2 (ENSSTUG00000001454)	CAAP1 (ENSSTUG00000001641)	ENSSTUG00000001647	ENSSTUG00000001650	zgc:112271 (ENSSTUG00000001656)	ENSSTUG00000001662	ing2 (ENSSTUG00000001677)	ENSSTUG00000001688	rwdd (ENSSTUG00000001738)	ADAM33 (ENSSTUG00000001744)	ENSSTUG00000001768
Northern pike	MODERN SPECIES	23	ENSELUG00000007305	ENSELUG00000029444	ENSELUG00000025084	osbp (ENSELUG00000009428)	ACY3 (ENSELUG00000009487)	cldnd1a (ENSELUG00000009499)	ENSELUG00000027838	ENSELUG00000009529	ENSELUG00000009597	ENSELUG00000009511	ENSELUG00000009523	ENSELUG00000033880	mfsd8 (ENSELUG00000009651)	ENSELUG00000001633	SGCZ (ENSELUG00000009695)	DCTN6 (ENSELUG00000009745) #22	RBPMS (ENSELUG00000009787) #23	FABP2 (ENSELUG00000000357)	DMRTA1 (ENSELUG00000009825)	ENSELUG00000029680	ENSELUG00000009839	ENSELUG00000009928	elavl2 (ENSELUG00000010026)	ENSELUG00000031060	CAAP1 (ENSELUG00000032289)	ENSELUG00000025148	ENSELUG00000010094	zgc:112271 (ENSELUG00000010118)	SLX1 (ENSELUG00000030900)	ENSELUG00000010141	ENSELUG00000010152
Otomorpha	ANCESTRAL SPECIES	13	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B	ENSGT00940000155378.c.b	ENSGT00940000161707.a.b	ENSGT00390000015386.b	ENSGT00940000159778.a	ENSGT00940000164407.b	ENSGT00390000002245	ENSGT00940000157122.b.a	ENSGT00530000067688	ENSGT00940000159031	ENSGT00390000002596.a	ENSGT00390000001189.b.i	ENSGT00390000017890.b.b #22	ENSGT00940000159617 #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a
Clupeiformes	ANCESTRAL SPECIES	370																ENSGT00390000017890.b.b #22	ENSGT00940000159617.d #23	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a
Atlantic herring	MODERN SPECIES	9	slc7a7 (ENSCHAG00000025033)	ENSCHAG00000025023	CCNB1IP1 (ENSCHAG00000025019)	ttc5 (ENSCHAG00000024996)	men1 (ENSCHAG00000024973)	map4k2 (ENSCHAG00000024900)	ENSCHAG00000024874	ENSCHAG00000024869	ENSCHAG00000024867	ENSCHAG00000024863	ufsp1 (ENSCHAG00000024860)	ENSCHAG00000024856	epoa (ENSCHAG00000024853)	pop7 (ENSCHAG00000024851)	dctn1a (ENSCHAG00000024469)	ENSCHAG00000024408 #22	ENSCHAG00000024391 #23	FABP2 (ENSCHAG00000024387)	ENSCHAG00000024385	DMRTA1 (ENSCHAG00000024382)	ENSCHAG00000024369	ELAVL2 (ENSCHAG00000024234)	CAAP1 (ENSCHAG00000024225)	PTPRD (ENSCHAG00000022128)	ENSCHAG00000022072	TYRP1 (ENSCHAG00000022041)	LURAP1L (ENSCHAG00000022033)	MPDZ (ENSCHAG00000018153)	ADGRL3 (ENSCHAG00000016770)	ENSCHAG00000012496	ENSCHAG00000012178
Osteoglossiformes	ANCESTRAL SPECIES	60													ENSGT00950000182886.a.b	ENSGT00940000154658.a	ENSGT00940000155527.j.a	ENSGT00390000017890.b.b #22	ENSGT00940000159617.b #23	ENSGT00940000155586.B	ENSGT00530000063790.b.g	ENSGT00940000155804.k.a	ENSGT00940000153617.D	ENSGT00390000017010	ENSGT00940000156823.e.h.b	ENSGT00510000047770.c.b	ENSGT00940000156823.e.g	ENSGT00940000160640	ENSGT00800000124172.i	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b.j
Asian bonytongue	MODERN SPECIES	20	USP53 (ENSSFOG00015018293)	ENSSFOG00015029766	FABP2 (ENSSFOG00015029809)	DMRTA1 (ENSSFOG00015029453)	elavl2 (ENSSFOG00015027679)	CAAP1 (ENSSFOG00015030065)	PTPRD (ENSSFOG00015018170)	TYRP1 (ENSSFOG00015018063)	LURAP1L (ENSSFOG00015031107)	MPDZ (ENSSFOG00015018045)	ENSSFOG00015017941	ENSSFOG00015017865	ENSSFOG00015030930	ENSSFOG00015032438	ADGRL3 (ENSSFOG00015017590)	DCTN6 (ENSSFOG00015017515) #22	ENSSFOG00015017481 #23	ENSSFOG00015017448	acox3 (ENSSFOG00015017377)	trmt44 (ENSSFOG00015017345)	GPR78 (ENSSFOG00015017342)	CPZ (ENSSFOG00015017288)	ENSSFOG00015017277	ENSSFOG00015033008	ENSSFOG00015030155	cldnd1a (ENSSFOG00015012670)	ACY3 (ENSSFOG00015012691)	ENSSFOG00015025322	coro1b (ENSSFOG00015012799)	DTX4 (ENSSFOG00015031699)	msantd1 (ENSSFOG00015012869)
P. kingsleyae	MODERN SPECIES	93		ENSPKIG00000006307	DMRTA1 (ENSPKIG00000006264)	ENSPKIG00000006226	ELAVL2 (ENSPKIG00000006187)	CAAP1 (ENSPKIG00000006115)	PTPRD (ENSPKIG00000006054)	TYRP1 (ENSPKIG00000006008)	LURAP1L (ENSPKIG00000006002)	ENSPKIG00000005990	ENSPKIG00000005955	ENSPKIG00000005930	ADGRL3 (ENSPKIG00000005620)	ENSPKIG00000005072	ENSPKIG00000004882	DCTN6 (ENSPKIG00000004859) #22	ENSPKIG00000004836 #23	gtf2e2 (ENSPKIG00000004797) #25	ENSPKIG00000004761	HTRA3 (ENSPKIG00000004725)	acox3 (ENSPKIG00000004695)	trmt44 (ENSPKIG00000004663)	GPR78 (ENSPKIG00000004649)	CPZ (ENSPKIG00000004602)	hmx4 (ENSPKIG00000004560)	hmx1 (ENSPKIG00000004577)	ADRA2C (ENSPKIG00000004535)	HGFAC (ENSPKIG00000004495)	ENSPKIG00000004478	msantd1 (ENSPKIG00000004462)	dtx4a (ENSPKIG00000004395)
Elephant shark	MODERN SPECIES	1506	cisd2 (ENSCMIG00000015391)	SLC9B2 (ENSCMIG00000015395)	bdh2 (ENSCMIG00000015405)	ENSCMIG00000015425	NANS (ENSCMIG00000015427)	ENSCMIG00000015430	gne (ENSCMIG00000015441)	ENSCMIG00000015453	PCGF3 (ENSCMIG00000015454)	ENSCMIG00000015457	rchy1 (ENSCMIG00000015460)	ENSCMIG00000015462	DGKQ (ENSCMIG00000015475)	wdr32 (ENSCMIG00000015495)	si:ch211-175m2.5 (ENSCMIG00000015498)	DCTN6 (ENSCMIG00000015504) #22	gtf2e2 (ENSCMIG00000015517) #25	smim18 (ENSCMIG00000015522) #24	B4GALT1 (ENSCMIG00000015524)	zgc:92045 (ENSCMIG00000015529) #20	SARAF (ENSCMIG00000015541) #19	gsr (ENSCMIG00000015565) #26	ENSCMIG00000015613 #11	mboat4 (ENSCMIG00000015615) #21	pkd2 (ENSCMIG00000015649)	ENSCMIG00000015684	uso1 (ENSCMIG00000015735)	ENSCMIG00000015944	g3bp2a (ENSCMIG00000015948)	CDKL2 (ENSCMIG00000015974)	NPFFR2 (ENSCMIG00000015981)