Murinae	ANCESTRAL SPECIES	23	ENSGT00390000008508	ENSGT00950000183061.a.a.a.a.a.a.b #7	ENSGT00940000160373 #8	ENSGT00440000033329.a.a.b #9	ENSGT00940000157066 #10	ENSGT00390000006975 #11	ENSGT00940000162544 #12	ENSGT00940000158928 #13	ENSGT00530000063205.B #14	ENSGT00940000159475 #15	ENSGT00940000156161.B #16	ENSGT00940000159066 #17	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #31	ENSGT00940000159168 #32	ENSGT01060000253534	ENSGT00940000157326 #33	ENSGT00940000160287 #35	ENSGT00390000012859 #36	ENSGT00390000003878 #37	ENSGT00940000159152.d
Mus	ANCESTRAL SPECIES	6	ENSGT00390000008508	ENSGT00950000183061.a.a.a.a.a.a.b #7	ENSGT00940000160373 #8	ENSGT00440000033329.a.a.b #9	ENSGT00940000157066 #10	ENSGT00390000006975 #11	ENSGT00940000162544 #12	ENSGT00940000158928 #13	ENSGT00530000063205.B #14	ENSGT00940000159475 #15	ENSGT00940000156161.B #16	ENSGT00940000159066 #17	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00900000143366 #30	ENSGT00950000183162.b #31	ENSGT00940000159168 #32	ENSGT01060000253534	ENSGT00940000157326 #33	ENSGT00940000160287 #35	ENSGT00390000012859 #36	ENSGT00390000003878 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000008508	ENSGT00950000183061.a.a.a.a.a.a.b #7	ENSGT00940000160373 #8	ENSGT00440000033329.a.a.b #9	ENSGT00940000157066 #10	ENSGT00390000006975 #11	ENSGT00940000162544 #12	ENSGT00940000158928 #13	ENSGT00530000063205.B #14	ENSGT00940000159475 #15	ENSGT00940000156161.B #16	ENSGT00940000159066 #17	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326 #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00900000143366 #30	ENSGT00950000183162.b #31	ENSGT00940000159168 #32	ENSGT01060000253534	ENSGT00940000157326 #33	ENSGT00940000160287 #35	ENSGT00390000012859 #36	ENSGT00390000003878 #37
Ryukyu mouse	MODERN SPECIES	17	Dlc1 (MGP_CAROLIEiJ_G0030986) #7	Trmt9b (MGP_CAROLIEiJ_G0030985) #8	Lonrf1 (MGP_CAROLIEiJ_G0030984) #9	Prag1 (MGP_CAROLIEiJ_G0030983) #10	Cldn23 (MGP_CAROLIEiJ_G0030982) #11	Gm19410 (MGP_CAROLIEiJ_G0030981) #12	Mfhas1 (MGP_CAROLIEiJ_G0030980) #13	Eri1 (MGP_CAROLIEiJ_G0030979) #14	Ppp1r3b (MGP_CAROLIEiJ_G0030978) #15	Tnks (MGP_CAROLIEiJ_G0030977) #16	Dusp4 (MGP_CAROLIEiJ_G0030976) #17	MGP_CAROLIEiJ_G0030975 #18	Saraf (MGP_CAROLIEiJ_G0030974) #19	Leprotl1 (MGP_CAROLIEiJ_G0030973) #20	Mboat4 (MGP_CAROLIEiJ_G0030972) #21	Dctn6 (MGP_CAROLIEiJ_G0030971) #22	Rbpms (MGP_CAROLIEiJ_G0030970) #23	Smim18 (MGP_CAROLIEiJ_G0030969) #24	Gtf2e2 (MGP_CAROLIEiJ_G0030968) #25	Gsr (MGP_CAROLIEiJ_G0030967) #26	Ubxn8 (MGP_CAROLIEiJ_G0030966) #27	Ppp2cb (MGP_CAROLIEiJ_G0030965) #28	Tex15 (MGP_CAROLIEiJ_G0030964) #29	MGP_CAROLIEiJ_G0030963 #30	Purg (MGP_CAROLIEiJ_G0030962) #31	Wrn (MGP_CAROLIEiJ_G0030961) #32	MGP_CAROLIEiJ_G0030960 #33	MGP_CAROLIEiJ_G0030959 #34	Fut10 (MGP_CAROLIEiJ_G0030958) #35	Mak16 (MGP_CAROLIEiJ_G0030957) #36	Tti2 (MGP_CAROLIEiJ_G0030956) #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000008508	ENSGT00950000183061.a.a.a.a.a.a.b #7	ENSGT00940000160373 #8	ENSGT00440000033329.a.a.b #9	ENSGT00940000157066 #10	ENSGT00390000006975 #11	ENSGT00940000162544 #12	ENSGT00940000158928 #13	ENSGT00530000063205.B #14	ENSGT00940000159475 #15	ENSGT00940000156161.B #16	ENSGT00940000159066 #17	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00410000029064 #24	ENSGT00390000011749 #25	ENSGT00940000156986 #26	ENSGT00390000018326.b #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #31	ENSGT00940000159168 #32	ENSGT01060000253534	ENSGT00940000157326 #33	ENSGT00940000160287 #35	ENSGT00390000012859 #36	ENSGT00390000003878 #37	ENSGT00940000159152.d
Mouse	MODERN SPECIES	17	Dlc1 (ENSMUSG00000031523) #7	Trmt9b (ENSMUSG00000039620) #8	Lonrf1 (ENSMUSG00000039633) #9	Prag1 (ENSMUSG00000050271) #10	Cldn23 (ENSMUSG00000055976) #11	Gm19410 (ENSMUSG00000109372) #12	Mfhas1 (ENSMUSG00000070056) #13	Eri1 (ENSMUSG00000031527) #14	Ppp1r3b (ENSMUSG00000046794) #15	Tnks (ENSMUSG00000031529) #16	Dusp4 (ENSMUSG00000031530) #17	Saraf (ENSMUSG00000031532) #19	Leprotl1 (ENSMUSG00000031513) #20	Mboat4 (ENSMUSG00000071113) #21	Gm10131 (ENSMUSG00000063412)	Dctn6 (ENSMUSG00000031516) #22	Rbpms (ENSMUSG00000031586) #23	Smim18 (ENSMUSG00000094500) #24	Gtf2e2 (ENSMUSG00000031585) #25	Gsr (ENSMUSG00000031584) #26	Ubxn8 (ENSMUSG00000052906) #27	Ppp2cb (ENSMUSG00000009630) #28	Tex15 (ENSMUSG00000009628) #29	Purg (ENSMUSG00000049184) #31	Wrn (ENSMUSG00000031583) #32	Nrg1 (ENSMUSG00000118541)	Nrg1 (ENSMUSG00000062991) #33	Fut10 (ENSMUSG00000046152) #35	Mak16 (ENSMUSG00000031578) #36	Tti2 (ENSMUSG00000031577) #37	Rnf122 (ENSMUSG00000039328)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000008508	ENSGT00950000183061.a.a.a.a.a.a.b #7	ENSGT00940000160373 #8	ENSGT00440000033329.a.a.b #9	ENSGT00940000157066 #10	ENSGT00390000006975 #11	ENSGT00940000162544 #12	ENSGT00940000158928 #13	ENSGT00530000063205.B #14	ENSGT00940000159475 #15	ENSGT00940000156161.B #16	ENSGT00940000159066 #17	ENSGT00390000013419 #19	ENSGT00390000006503.b #20	ENSGT01030000234564.a.a.b.b #21	ENSGT00390000017890 #22	ENSGT00940000159617 #23	ENSGT00390000011749 #25	ENSGT00410000029064 #24	ENSGT00940000156986 #26	ENSGT00390000018326.b #27	ENSGT00550000074618.a.b #28	ENSGT00390000006260 #29	ENSGT00950000183162.b #31	ENSGT00940000159168 #32	ENSGT00940000157326 #33	ENSGT00940000160287 #35	ENSGT00390000012859 #36	ENSGT00390000003878 #37	ENSGT00940000159152.d	ENSGT00940000158107
Steppe mouse	MODERN SPECIES	767																ENSMSIG00000002475 #22
spretus	MODERN SPECIES	17	AI429214 (MGP_SPRETEiJ_G0032103)	Dlc1 (MGP_SPRETEiJ_G0032102) #7	Trmt9b (MGP_SPRETEiJ_G0032101) #8	Lonrf1 (MGP_SPRETEiJ_G0032100) #9	Prag1 (MGP_SPRETEiJ_G0032099) #10	Cldn23 (MGP_SPRETEiJ_G0032098) #11	Gm19410 (MGP_SPRETEiJ_G0032097) #12	Mfhas1 (MGP_SPRETEiJ_G0032096) #13	Eri1 (MGP_SPRETEiJ_G0032095) #14	Ppp1r3b (MGP_SPRETEiJ_G0032094) #15	Tnks (MGP_SPRETEiJ_G0032093) #16	Dusp4 (MGP_SPRETEiJ_G0032092) #17	MGP_SPRETEiJ_G0032091 #19	Leprotl1 (MGP_SPRETEiJ_G0032090) #20	Mboat4 (MGP_SPRETEiJ_G0032089) #21	Dctn6 (MGP_SPRETEiJ_G0032088) #22	Rbpms (MGP_SPRETEiJ_G0032087) #23	Smim18 (MGP_SPRETEiJ_G0032086) #24	Gtf2e2 (MGP_SPRETEiJ_G0032085) #25	Gsr (MGP_SPRETEiJ_G0032084) #26	Ubxn8 (MGP_SPRETEiJ_G0032083) #27	Ppp2cb (MGP_SPRETEiJ_G0032082) #28	Tex15 (MGP_SPRETEiJ_G0032081) #29	Purg (MGP_SPRETEiJ_G0032080) #31	Wrn (MGP_SPRETEiJ_G0032079) #32	MGP_SPRETEiJ_G0032078 #33	MGP_SPRETEiJ_G0032077 #33	Fut10 (MGP_SPRETEiJ_G0032076) #35	Mak16 (MGP_SPRETEiJ_G0032075) #36	Tti2 (MGP_SPRETEiJ_G0032074) #37	Rnf122 (MGP_SPRETEiJ_G0032073)
Shrew mouse	MODERN SPECIES	10	AI429214 (MGP_PahariEiJ_G0021455)	Dlc1 (MGP_PahariEiJ_G0021454) #7	Trmt9b (MGP_PahariEiJ_G0021453) #8	Lonrf1 (MGP_PahariEiJ_G0021452) #9	Prag1 (MGP_PahariEiJ_G0021451) #10	Cldn23 (MGP_PahariEiJ_G0021450) #11	Gm19410 (MGP_PahariEiJ_G0021449) #12	Mfhas1 (MGP_PahariEiJ_G0021448) #13	Eri1 (MGP_PahariEiJ_G0021447) #14	Ppp1r3b (MGP_PahariEiJ_G0021446) #15	Tnks (MGP_PahariEiJ_G0021445) #16	Dusp4 (MGP_PahariEiJ_G0021444) #17	Saraf (MGP_PahariEiJ_G0021443) #19	Leprotl1 (MGP_PahariEiJ_G0021442) #20	Mboat4 (MGP_PahariEiJ_G0021441) #21	Dctn6 (MGP_PahariEiJ_G0021440) #22	Rbpms (MGP_PahariEiJ_G0021439) #23	Smim18 (MGP_PahariEiJ_G0021438) #24	Gtf2e2 (MGP_PahariEiJ_G0021437) #25	Gsr (MGP_PahariEiJ_G0021436) #26	Ubxn8 (MGP_PahariEiJ_G0021435) #27	Ppp2cb (MGP_PahariEiJ_G0021434) #28	MGP_PahariEiJ_G0021433 #29	MGP_PahariEiJ_G0021432 #30	Purg (MGP_PahariEiJ_G0021431) #31	Wrn (MGP_PahariEiJ_G0021430) #32	MGP_PahariEiJ_G0021429 #33	MGP_PahariEiJ_G0021428 #33	Fut10 (MGP_PahariEiJ_G0021427) #35	Mak16 (MGP_PahariEiJ_G0021426) #36	Tti2 (MGP_PahariEiJ_G0021425) #37
Rat	MODERN SPECIES	7	Trmt9b (ENSRNOG00000011253) #8	ENSRNOG00000066954	Lonrf1 (ENSRNOG00000053706) #9	Prag1 (ENSRNOG00000011407) #10	Cldn23 (ENSRNOG00000011424) #11	LOC100910088 (ENSRNOG00000054809) #12	Mfhas1 (ENSRNOG00000011431) #13	Eri1 (ENSRNOG00000011448) #14	Ppp1r3b (ENSRNOG00000011474) #15	Tnks (ENSRNOG00000011625) #16	Dusp4 (ENSRNOG00000011921) #17	AABR07026048.1 (ENSRNOG00000031879)	Saraf (ENSRNOG00000012329) #19	Leprotl1 (ENSRNOG00000012601) #20	Mboat4 (ENSRNOG00000030102) #21	Dctn6 (ENSRNOG00000013254) #22	LOC100364509 (ENSRNOG00000050067)	AABR07026059.1 (ENSRNOG00000031959)	Rbpms (ENSRNOG00000013328) #23	Gtf2e2 (ENSRNOG00000014422) #25	Smim18 (ENSRNOG00000049689) #24	ENSRNOG00000070491	Gsr (ENSRNOG00000014915) #26	Ubxn8 (ENSRNOG00000015109) #27	Ppp2cb (ENSRNOG00000015182) #28	Tex15 (ENSRNOG00000007748) #29	Purg (ENSRNOG00000015426) #31	Wrn (ENSRNOG00000015440) #32	Nrg1 (ENSRNOG00000010392) #33	ENSRNOG00000070947	Fut10 (ENSRNOG00000050857) #35