Otophysi ANCESTRAL SPECIES 281 ENSGT00920000149159 #19 ENSGT00940000156901.B #20 ENSGT00950000183134.c.b #21 ENSGT00730000111224 ENSGT00940000157435.a.a #22 ENSGT00940000160973 #23 ENSGT00390000001063 #24 ENSGT00950000182815.a.a.a.a.a.d #25 ENSGT00940000155919.b.a.e #26 ENSGT00940000155292.db.a #27 ENSGT01100000263502.B.a.b.b #28 ENSGT00940000158504 #29 ENSGT00950000182993.A.b.f #30 ENSGT00390000010427.c #31 ENSGT00940000155464.a.a ##32 ENSGT00940000161387 ENSGT00950000182993.A.b.e ##30 ENSGT00390000015433 ENSGT00800000124150 ENSGT00730000112225 Cyprinoidei ANCESTRAL SPECIES 16 ENSGT00390000000642 #10 ENSGT00390000016543.d #11 ENSGT00390000016002.o.b.a ##12 ENSGT00390000016002.o.b.b #12 ENSGT00940000156621.e.b #13 ENSGT00940000155188.B.a #14 ENSGT00940000170274 ENSGT00390000013415.b #15 ENSGT00940000162372.b #16 ENSGT00940000156515.b #17 ENSGT00940000158897.e.b #18 ENSGT00920000149159 #19 ENSGT00940000156901.B #20 ENSGT00950000183134.c.b #21 ENSGT00730000111224 ENSGT00940000157435.a.a #22 ENSGT00940000160973 #23 ENSGT00940000155292.db.a #27 ENSGT01100000263502.B.a.b.b #28 ENSGT00940000158504 #29 ENSGT00950000182993.A.b.f #30 ENSGT00390000010427.c #31 ENSGT00940000155464.a.b #32 ENSGT00390000018651.b ENSGT00390000005182.k.r.a.b.b ENSGT00390000005182.k.r.a.b.a ENSGT00390000008160 #33 ENSGT00940000165259.b #34 ENSGT00940000155776.b #35 ENSGT00940000165259.a ##34 ENSGT00390000002096 #36 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 25 ENSGT00940000157955.d.a.g #7 ENSGT00940000155945.i.a.f #8 ENSGT00940000163762.b.h.b #9 ENSGT00390000000642.j #10 ENSGT00390000016543.d.b #11 ENSGT00390000016002.o.b.b #12 ENSGT00940000156621.e.b.c #13 ENSGT00940000155188.B.a.e #14 ENSGT00390000013415.b.b #15 ENSGT00940000162372.b.b #16 ENSGT00940000156515.b.c #17 ENSGT00940000158897.e.b.b #18 ENSGT00920000149159.f #19 ENSGT00940000156901.B.d #20 ENSGT00950000183134.c.b.d #21 ENSGT00940000157435.a.a.d #22 ENSGT00940000160973.b #23 ENSGT00390000001063 #24 ENSGT00950000182815.a.a.a.a.a.d.c.a #25 ENSGT00940000155919.b.a.e.b #26 ENSGT00940000155292.db.a.b #27 ENSGT01100000263502.B.a.b.b.a #28 ENSGT00940000158504 #29 ENSGT00950000182993.A.b.f #30 ENSGT00390000010427.c.kc.b #31 ENSGT00940000155464.a.b.c #32 ENSGT00390000008160 #33 ENSGT00940000165259.b.a #34 ENSGT00940000155776.b.b #35 ENSGT00390000002096.h.a #36 ENSGT00530000063460.A.b.f.b.a #37 Cyprininae_a ANCESTRAL SPECIES 26 ENSGT00940000163762.b.h.b #9 ENSGT00390000000642.j #10 ENSGT00390000016543.d.b #11 ENSGT00390000016002.o.b.b #12 ENSGT00940000156621.e.b.c #13 ENSGT00940000155188.B.a.e #14 ENSGT00390000013415.b.b #15 ENSGT00940000162372.b.b #16 ENSGT00940000156515.b.c #17 ENSGT00940000154184.A.u.a ENSGT00940000158425.b.d ENSGT00940000158897.e.b.b #18 ENSGT00920000149159.f #19 ENSGT00940000156901.B.d #20 ENSGT00950000183134.c.b.d #21 ENSGT00940000157435.a.a.d #22 ENSGT00940000160973.b #23 ENSGT00390000001063 #24 ENSGT00950000182815.a.a.a.a.a.d.c.a #25 ENSGT00940000155919.b.a.e.b #26 ENSGT00940000155292.db.a.b #27 ENSGT01100000263502.B.a.b.b.a #28 ENSGT00940000158504 #29 ENSGT00950000182993.A.b.f #30 ENSGT00390000010427.c.kc.b #31 ENSGT00940000155464.a.b.c #32 ENSGT00390000008160 #33 ENSGT00940000165259.b.a #34 ENSGT00940000155776.b.b #35 ENSGT00390000002096.h.a #36 ENSGT00530000063460.A.b.f.b.a #37 Common carp reference MODERN SPECIES 15 ENSCCRG00000060244 ##12 ENSCCRG00000024051 #13 ENSCCRG00000024171 #14 ENSCCRG00000073046 zgc:73226 (ENSCCRG00000027352) #15 ENSCCRG00000057841 ENSCCRG00000060190 #16 ENSCCRG00000018552 #17 ENSCCRG00000065485 ENSCCRG00000070382 pxna (ENSCCRG00000026270) #18 ostf1 (ENSCCRG00000081315) #19 MEX3C (ENSCCRG00000008400) ##23 ENSCCRG00000082758 #20 me2 (ENSCCRG00000031582) #21 ENSCCRG00000020234 #22 STPG2 (ENSCCRG00000008402) #24 UNC5C (ENSCCRG00000070864) #25 bmpr1ba (ENSCCRG00000021974) #26 pdlim5a (ENSCCRG00000051306) #27 opn4xb (ENSCCRG00000049757) #28 ENSCCRG00000031725 #29 ENSCCRG00000054400 #30 nipbla (ENSCCRG00000036463) #31 slc1a3a (ENSCCRG00000017031) #32 spef2 (ENSCCRG00000011607) #33 lifra (ENSCCRG00000058318) #34 ENSCCRG00000073320 ##35 ENSCCRG00000014850 #36 ENSCCRG00000054002 #37 paip1 (ENSCCRG00000041558) Golden-line barbel MODERN SPECIES 185 zgc:73226 (ENSSGRG00000015572) #15 ENSSGRG00000015573 #16 MSI1 (ENSSGRG00000015587) #17 tnks1bp1 (ENSSGRG00000016328) crybb3 (ENSSGRG00000016329) ENSSGRG00000016333 #18 ostf1 (ENSSGRG00000016335) #19 ENSSGRG00000016339 #20 me2 (ENSSGRG00000016373) #21 SMAD4 (ENSSGRG00000016929) #22 MEX3C (ENSSGRG00000016930) #23 STPG2 (ENSSGRG00000016931) #24 UNC5C (ENSSGRG00000016933) #25 bmpr1ba (ENSSGRG00000017076) #26 pdlim5a (ENSSGRG00000017417) ##27 opn4xb (ENSSGRG00000017430) #28 nipbla (ENSSGRG00000017474) #31 slc1a3a (ENSSGRG00000019065) #32 spef2 (ENSSGRG00000019658) #33 lifra (ENSSGRG00000019666) #34 ENSSGRG00000019671 #35 RICTOR (ENSSGRG00000019679) #36 paip1 (ENSSGRG00000019853) mybbp1a (ENSSGRG00000020004) ENSSGRG00000020005 Cyprininae ANCESTRAL SPECIES 19 ENSGT00390000016002.o.b.a.a ##12 ENSGT00940000156621.e.b.d ##13 ENSGT00940000155188.B.a.f ##14 ENSGT00940000170274.a.a ENSGT00390000013415.b.a ##15 ENSGT00940000162372.b.a ##16 ENSGT00940000156515.b.d ##17 ENSGT00940000156515.a.b ##17 ENSGT00940000154184.A.u ENSGT00940000158425.b ENSGT00940000158897.e.b.a ##18 ENSGT00920000149159.e ##19 ENSGT00940000156901.B.c ##20 ENSGT00950000183134.c.b.c ##21 ENSGT00730000111224 ENSGT00940000157435.a.a.c ##22 ENSGT00940000160973.a ##23 ENSGT00950000182815.a.a.a.a.a.d.c.b ##25 ENSGT00940000155919.b.a.e.a ##26 ENSGT00940000155292.db.a.a.a.a ##27 ENSGT01100000263502.B.a.b.b.b ##28 ENSGT00390000010427.c.kc.a ##31 ENSGT00940000155464.a.b.d ##32 ENSGT00390000018651.b ENSGT00390000005182.k.r.a.b.b.a.b ENSGT00390000005182.k.r.a.b.a ENSGT00390000005182.k.r.a.b.b.a.a ENSGT00940000165259.b.b ##34 ENSGT00940000155776.b.a.a ##35 ENSGT00390000002096.h.b ##36 ENSGT00530000063460.A.b.f.b.b ##37 Goldfish DUPLICATION Goldfish MODERN SPECIES 44 ENSCARG00000003444 mvb12ba (ENSCARG00000003449) ##8 ENSCARG00000003452 ENSCARG00000003454 ENSCARG00000003462 ##9 MAPKAP1 (ENSCARG00000003500) ##10 AJM1 (ENSCARG00000003519) ##11 RABL6 (ENSCARG00000003522) ##12 TRAF2 (ENSCARG00000003532) ##13 ENSCARG00000003624 ##14 ENSCARG00000004454 TMEM233 (ENSCARG00000004462) ##16 MSI1 (ENSCARG00000004468) ##17 me2 (ENSCARG00000004496) ##21 elac1 (ENSCARG00000004690) SMAD4 (ENSCARG00000004726) ##22 MEX3C (ENSCARG00000004905) #23 vamp5 (ENSCARG00000004909) zgc:194202 (ENSCARG00000004915) nsmfb (ENSCARG00000004950) ENSCARG00000005234 ENSCARG00000005243 ENSCARG00000005246 tncb (ENSCARG00000005446) ##14 ENSCARG00000011900 TRAF2 (ENSCARG00000011905) ##13 trafd1 (ENSCARG00000011940) ENSCARG00000011946 ENSCARG00000011949 niban2b (ENSCARG00000011965) stxbp1b (ENSCARG00000012133) Goldfish MODERN SPECIES 44 ENSCARG00000001871 ##11 RABL6 (ENSCARG00000001866) ##12 ENSCARG00000001864 TRAF2 (ENSCARG00000001854) ##13 ENSCARG00000001084 ##14 zgc:73226 (ENSCARG00000000937) ##15 ENSCARG00000000935 ##16 MSI1 (ENSCARG00000000923) ##17 ENSCARG00000000911 crybb3 (ENSCARG00000000908) pxna (ENSCARG00000000894) ##18 ostf1 (ENSCARG00000000816) ##19 ENSCARG00000000786 ##20 me2 (ENSCARG00000000741) ##21 elac1 (ENSCARG00000000717) SMAD4 (ENSCARG00000000700) ##22 MEX3C (ENSCARG00000000690) #23 ENSCARG00000000688 bmpr1ba (ENSCARG00000000659) ##26 pdlim5a (ENSCARG00000000615) ##27 opn4xb (ENSCARG00000000590) ##28 nipbla (ENSCARG00000000523) ##31 slc1a3a (ENSCARG00000000482) ##32 lmbrd2a (ENSCARG00000000384) ENSCARG00000000247 ENSCARG00000000226 ENSCARG00000000216 ENSCARG00000000200 lifra (ENSCARG00000000172) ##34 ENSCARG00000042760 ##35 RICTOR (ENSCARG00000042256) ##36 Cyprininae_a ANCESTRAL SPECIES 199 ENSGT00390000016002.o.b.a.a ##12 ENSGT00940000156621.e.b.d ##13 ENSGT00940000155188.B.a.f ##14 ENSGT00940000170274.a.a ENSGT00390000013415.b.a ##15 ENSGT00940000162372.b.a ##16 ENSGT00940000156515.b.d ##17 ENSGT00940000156515.a.b ##17 ENSGT00940000154184.A.u.b ENSGT00940000158425.b.c ENSGT00940000158897.e.b.a ##18 ENSGT00920000149159.e ##19 ENSGT00940000156901.B.c ##20 ENSGT00950000183134.c.b.c ##21 ENSGT00730000111224 ENSGT00940000157435.a.a.c ##22 ENSGT00940000160973.a ##23 ENSGT00950000182815.a.a.a.a.a.d.c.b ##25 ENSGT00940000155919.b.a.e.a ##26 ENSGT00940000155292.db.a.a.a.a ##27 ENSGT01100000263502.B.a.b.b.b ##28 ENSGT00390000010427.c.kc.a ##31 ENSGT00940000155464.a.b.d ##32 ENSGT00390000018651.b ENSGT00390000005182.k.r.a.b.b.a.b ENSGT00390000005182.k.r.a.b.a ENSGT00390000005182.k.r.a.b.b.a.a ENSGT00940000165259.b.b ##34 ENSGT00940000155776.b.a.a ##35 ENSGT00390000002096.h.b ##36 ENSGT00530000063460.A.b.f.b.b ##37 Common carp reference MODERN SPECIES 7 MAPKAP1 (ENSCCRG00000024033) ##10 ENSCCRG00000064613 ##11 ENSCCRG00000075954 ##12 ENSCCRG00000020854 ##13 ENSCCRG00000029000 ##14 ENSCCRG00000074753 zgc:73226 (ENSCCRG00000057836) ##15 ENSCCRG00000053469 ##17 msi1a (ENSCCRG00000030590) ##17 ENSCCRG00000070289 crybb3 (ENSCCRG00000077404) pxna (ENSCCRG00000003089) ##18 ostf1 (ENSCCRG00000003120) ##19 ENSCCRG00000003274 ##20 me2 (ENSCCRG00000059443) ##21 ENSCCRG00000076206 ##22 MEX3C (ENSCCRG00000021262) #23 ENSCCRG00000054822 UNC5C (ENSCCRG00000021969) ##25 bmpr1ba (ENSCCRG00000071840) ##26 pdlim5a (ENSCCRG00000051309) ##27 opn4xb (ENSCCRG00000051302) ##28 ENSCCRG00000063750 #30 nipbla (ENSCCRG00000016976) ##31 slc1a3a (ENSCCRG00000072252) ##32 lmbrd2a (ENSCCRG00000010996) ENSCCRG00000065610 ENSCCRG00000064212 ENSCCRG00000074271 lifra (ENSCCRG00000011111) ##34 ENSCCRG00000011126 ##35 Golden-line barbel MODERN SPECIES 608 AJM1 (ENSSGRG00000006446) ##11 ENSSGRG00000006447 #12 ENSSGRG00000006448 #12 TRAF2 (ENSSGRG00000006450) ##13 ENSSGRG00000006477 ##14 ENSSGRG00000006632 zgc:73226 (ENSSGRG00000006633) #15 ENSSGRG00000006634 ##16 MSI1 (ENSSGRG00000006641) ##17 ENSSGRG00000006767 crybb3 (ENSSGRG00000006770) pxna (ENSSGRG00000006779) ##18 ostf1 (ENSSGRG00000006791) ##19 me2 (ENSSGRG00000006838) ##21 elac1 (ENSSGRG00000006891) SMAD4 (ENSSGRG00000006892) ##22 MEX3C (ENSSGRG00000006894) ##23 ENSSGRG00000006896 Zebrafish MODERN SPECIES 20 MAPKAP1 (ENSDARG00000091777) #10 RABL6 (ENSDARG00000079046) #12 ENSDARG00000115005 #12 TRAF2 (ENSDARG00000078378) #13 ENSDARG00000078362 #14 zgc:73226 (ENSDARG00000023759) #15 ENSDARG00000102015 #17 crybb3 (ENSDARG00000041301) tnks1bp1 (ENSDARG00000068760) msi1a (ENSDARG00000041299) ##17 pxna (ENSDARG00000088590) #18 ostf1 (ENSDARG00000091555) #19 ENSDARG00000076853 #20 me2 (ENSDARG00000100718) #21 elac1 (ENSDARG00000045095) SMAD4 (ENSDARG00000012649) #22 ENSDARG00000061060 #24 ENSDARG00000076082 ENSDARG00000104724 UNC5C (ENSDARG00000099133) #25 bmpr1ba (ENSDARG00000104100) #26 ENSDARG00000116302 pdlim5a (ENSDARG00000101777) #27 opn4xb (ENSDARG00000103259) #28 EGFLAM (ENSDARG00000099008) #29 GDNF (ENSDARG00000103764) #30 nipbla (ENSDARG00000098272) #31 slc1a3a (ENSDARG00000104431) #32 lmbrd2a (ENSDARG00000099566) ENSDARG00000101556 ENSDARG00000101104 Characiphysae ANCESTRAL SPECIES 225 ENSGT00920000149159 #19 ENSGT00940000156901.B #20 ENSGT00950000183134.c.b.a #21 ENSGT00730000111224 ENSGT00940000157435.a.a #22 ENSGT00940000160973 #23 ENSGT00390000001063 #24 ENSGT00950000182815.a.a.a.a.a.c.a ##25 Channel catfish MODERN SPECIES 14 ENSIPUG00000002371 tal2 (ENSIPUG00000002366) ugt2b5 (ENSIPUG00000001375) GAK (ENSIPUG00000001211) ENSIPUG00000001183 lifra (ENSIPUG00000001153) #34 spef2 (ENSIPUG00000001003) #33 ENSIPUG00000000979 lmbrd2a (ENSIPUG00000000959) slc1a3a (ENSIPUG00000000944) #32 EGFLAM (ENSIPUG00000023628) #29 pdlim5 (ENSIPUG00000023626) ostf1 (ENSIPUG00000023624) #19 ENSIPUG00000023623 #20 me2 (ENSIPUG00000023618) #21 SMAD4 (ENSIPUG00000023608) #22 ENSIPUG00000023604 #24 paip1 (ENSIPUG00000023598) mybbp1a (ENSIPUG00000023590) fgf10 (ENSIPUG00000023587) adamts12 (ENSIPUG00000023573) agpat9 (ENSIPUG00000023560) tnksb (ENSIPUG00000023527) atp5meb (ENSIPUG00000023521) idua (ENSIPUG00000023514) rchy1 (ENSIPUG00000023505) ENSIPUG00000023438 ENSIPUG00000023397 ENSIPUG00000023389 RUSC2 (ENSIPUG00000023364) ENSIPUG00000023348 Characiphysae_b ANCESTRAL SPECIES 254 ENSGT00920000149159 #19 ENSGT00940000156901.B #20 ENSGT00950000183134.c.b.a #21 ENSGT00730000111224 ENSGT00940000157435.a.a #22 ENSGT00940000160973 #23 ENSGT00390000001063 #24 ENSGT00950000182815.a.a.a.a.a.c.a ##25 Characoidei ANCESTRAL SPECIES 333 ENSGT00920000149159 #19 ENSGT00940000156901.B #20 ENSGT00950000183134.c.b.a #21 ENSGT00730000111224 ENSGT00940000157435.a.a #22 ENSGT00390000001063 #24 ENSGT00950000182815.a.a.a.a.a.c.a ##25 ENSGT00390000018651.b ENSGT00940000155464.a.b #32 Mexicana tetra MODERN SPECIES 28 pias2 (ENSAMXG00000002435) MN1 (ENSAMXG00000013235) PITPNB (ENSAMXG00000030401) ENSAMXG00000034576 TTC28 (ENSAMXG00000013238) ENSAMXG00000040861 ENSAMXG00000041958 ENSAMXG00000039595 ENSAMXG00000035142 ENSAMXG00000037751 ostf1 (ENSAMXG00000035744) #19 ENSAMXG00000029122 #20 me2 (ENSAMXG00000041378) #21 elac1 (ENSAMXG00000043092) ENSAMXG00000042514 SMAD4 (ENSAMXG00000003756) #22 ENSAMXG00000035146 #24 ENSAMXG00000036076 ##25 lmbrd2a (ENSAMXG00000040844) slc1a3a (ENSAMXG00000038269) #32 ENSAMXG00000033635 ##31 EGFLAM (ENSAMXG00000040112) #29 ENSAMXG00000037966 #30 opn4xb (ENSAMXG00000038102) #28 ENSAMXG00000032455 ENSAMXG00000034374 ENSAMXG00000031969 ENSAMXG00000043079 ##27 bmpr1ba (ENSAMXG00000029340) #26 ENSAMXG00000037387 ENSAMXG00000040657 Electric eel MODERN SPECIES 1288 ENSEEEG00000008084 #21 elac1 (ENSEEEG00000008081) SMAD4 (ENSEEEG00000008023) #22 MEX3C (ENSEEEG00000008021) #23 ENSEEEG00000008020 #24 bmpr1ba (ENSEEEG00000007475) #26