Euteleosteomorpha	ANCESTRAL SPECIES	115	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000160278	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850	ENSGT00950000183134.c.b	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p
Acanthomorphata	ANCESTRAL SPECIES	13															ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000167699	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Oryzias	ANCESTRAL SPECIES	7	ENSGT00390000009571.a.a.b #7	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00390000009571.a.a.b #7	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048.s #35	ENSGT00390000008048.t #36	ENSGT00950000183089.d #37
Japanese Medaka HdrR	MODERN SPECIES	23	ENSORLG00000022249 #7	naa35 (ENSORLG00000025189) #8	agtpbp1 (ENSORLG00000005317) #9	NTRK2 (ENSORLG00000005227) #10	SLC28A3 (ENSORLG00000005199) #11	rmi1 (ENSORLG00000005175) #12	hnrnpk (ENSORLG00000005161) #13	zgc:136564 (ENSORLG00000005140) #14	KIF27 (ENSORLG00000005126) #15	gkap1 (ENSORLG00000005111) #16	ENSORLG00000028966 #17	IDNK (ENSORLG00000028424) #18	FRMD3 (ENSORLG00000005087) #19	RASEF (ENSORLG00000005076) #20	ENSORLG00000005051 #21	SMAD4 (ENSORLG00000005020) #22	ENSORLG00000004985 #23	tmed7 (ENSORLG00000004971) #24	fem1c (ENSORLG00000004946) #25	CCDC112 (ENSORLG00000004928) #26	pggt1b (ENSORLG00000004917) #27	trim36 (ENSORLG00000004896) #28	CCSER1 (ENSORLG00000025234) #29	ENSORLG00000004885 #30	grid2 (ENSORLG00000024663) #31	atoh1a (ENSORLG00000004876) #32	smarcad1a (ENSORLG00000004869) #33	prf1.5 (ENSORLG00000004857) #34	ENSORLG00000027013 #35	MPEG1 (ENSORLG00000022935) #36	si:ch211-103n10.5 (ENSORLG00000027969) #37
Chinese medaka	MODERN SPECIES	2334																SMAD4 (ENSOSIG00000004354) #22
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00390000009571.a.a.b #7	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Indian medaka	MODERN SPECIES	11	naa35 (ENSOMEG00000023694) #8	agtpbp1 (ENSOMEG00000023673) #9	NTRK2 (ENSOMEG00000023654) #10	SLC28A3 (ENSOMEG00000023640) #11	rmi1 (ENSOMEG00000023629) #12	hnrnpk (ENSOMEG00000023618) #13	zgc:136564 (ENSOMEG00000023598) #14	KIF27 (ENSOMEG00000023581) #15	ENSOMEG00000023555	gkap1 (ENSOMEG00000023537) #16	ENSOMEG00000023518 #17	IDNK (ENSOMEG00000023508) #18	FRMD3 (ENSOMEG00000023490) #19	RASEF (ENSOMEG00000023457) #20	ENSOMEG00000023407 #21	SMAD4 (ENSOMEG00000023362) #22	mex3b (ENSOMEG00000023339) #23	tmed7 (ENSOMEG00000023319) #24	fem1c (ENSOMEG00000023298) #25	CCDC112 (ENSOMEG00000023271) #26	pggt1b (ENSOMEG00000023242) #27	trim36 (ENSOMEG00000023192) #28	CCSER1 (ENSOMEG00000023145) #29	ENSOMEG00000023084 #30	grid2 (ENSOMEG00000023067) #31	ENSOMEG00000023049	atoh1a (ENSOMEG00000023044) #32	smarcad1a (ENSOMEG00000023032) #33	prf1.5 (ENSOMEG00000023009) #34	mpeg1.2 (ENSOMEG00000000621) #36	si:ch211-103n10.5 (ENSOMEG00000022994) #37
Javanese ricefish	MODERN SPECIES	23	GOLM1 (ENSOJAG00000007520)	ENSOJAG00000007510 #7	naa35 (ENSOJAG00000007406) #8	NTRK2 (ENSOJAG00000006967) #10	SLC28A3 (ENSOJAG00000006896) #11	rmi1 (ENSOJAG00000006873) #12	hnrnpk (ENSOJAG00000006835) #13	zgc:136564 (ENSOJAG00000006819) #14	ENSOJAG00000006798 #15	gkap1 (ENSOJAG00000006779) #16	ENSOJAG00000006770	IDNK (ENSOJAG00000006763) #18	FRMD3 (ENSOJAG00000005956) #19	RASEF (ENSOJAG00000023033) #20	ENSOJAG00000022806 #21	SMAD4 (ENSOJAG00000022692) #22	mex3b (ENSOJAG00000022687) #23	tmed7 (ENSOJAG00000022684) #24	fem1c (ENSOJAG00000022680) #25	pggt1b (ENSOJAG00000022640) #27	trim36 (ENSOJAG00000022504) #28	CCSER1 (ENSOJAG00000022487) #29	ENSOJAG00000022485	ENSOJAG00000022480 #30	grid2 (ENSOJAG00000022423) #31	atoh1a (ENSOJAG00000022406) #32	smarcad1a (ENSOJAG00000022387) #33	prf1.5 (ENSOJAG00000022361) #34	mpeg1.2 (ENSOJAG00000022358) #36	si:ch211-103n10.5 (ENSOJAG00000022354) #37	tspan36 (ENSOJAG00000022330)
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Aplocheiloidei	ANCESTRAL SPECIES	24	ENSGT00530000063675.b	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33
Turquoise killifish	MODERN SPECIES	1627	AGTPBP1 (ENSNFUG00015015782) #9	NTRK2 (ENSNFUG00015015969) #10	SLC28A3 (ENSNFUG00015016066) #11	ENSNFUG00015016410	RMI1 (ENSNFUG00015016412) #12	HNRNPK (ENSNFUG00015016420) #13	zgc:136564 (ENSNFUG00015016452) #14	ENSNFUG00015016489 #15	gkap1 (ENSNFUG00015016499) #16	ENSNFUG00015016511 #17	IDNK (ENSNFUG00015016517) #18	FRMD3 (ENSNFUG00015016538) #19	ENSNFUG00015016661	RASEF (ENSNFUG00015016668) #20	ENSNFUG00015016714 #21	SMAD4 (ENSNFUG00015017545) #22	MEX3C (ENSNFUG00015017604) #23	TMED7 (ENSNFUG00015017609) #24	FEM1C (ENSNFUG00015017616) #25	PGGT1B (ENSNFUG00015017630) #27	ENSNFUG00015017667	TRIM36 (ENSNFUG00015017700) #28	ENSNFUG00015017811	ENSNFUG00015017816	ablim3 (ENSNFUG00015017828)	CCSER1 (ENSNFUG00015017848) #29	CU138508.1 (ENSNFUG00015017857)	ENSNFUG00015017866	ENSNFUG00015017872	ENSNFUG00015017877	grid2 (ENSNFUG00015017899) #31
Mangrove rivulus	MODERN SPECIES	26	naa35 (ENSKMAG00000020739) #8	agtpbp1 (ENSKMAG00000020817) #9	NTRK2 (ENSKMAG00000020873) #10	SLC28A3 (ENSKMAG00000020902) #11	rmi1 (ENSKMAG00000020921) #12	hnrnpk (ENSKMAG00000020943) #13	KIF27 (ENSKMAG00000020967) #15	zgc:136564 (ENSKMAG00000021001) #14	ENSKMAG00000021010 #15	gkap1 (ENSKMAG00000021021) #16	IDNK (ENSKMAG00000021037) #18	FRMD3 (ENSKMAG00000021058) #19	ENSKMAG00000021096	RASEF (ENSKMAG00000021106) #20	ENSKMAG00000021130 #21	SMAD4 (ENSKMAG00000021172) #22	mex3b (ENSKMAG00000021181) #23	tmed7 (ENSKMAG00000021190) #24	fem1c (ENSKMAG00000021198) #25	ENSKMAG00000021207	pggt1b (ENSKMAG00000021222) #27	trim36 (ENSKMAG00000021253) #28	CCSER1 (ENSKMAG00000021304) #29	grid2 (ENSKMAG00000021319) #31	atoh1a (ENSKMAG00000021339) #32	smarcad1a (ENSKMAG00000021351) #33
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00390000008048.r #36	ENSGT00940000164067.C #34	ENSGT00390000008048.q #36	ENSGT00950000183089.d #37
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00390000008048.r #36	ENSGT00940000164067.C #34	ENSGT00390000008048.q #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Poecilia	ANCESTRAL SPECIES	3	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00390000008048.r #36	ENSGT00940000164067.C.t #34	ENSGT00390000008048.q #36	ENSGT00950000183089.d #37	ENSGT00940000164634
NAME_6	ANCESTRAL SPECIES	51	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT01090000261735	ENSGT00910000144252.d.a #33	ENSGT00390000008048.r #36	ENSGT00940000164067.C.t #34	ENSGT00390000008048.q #36	ENSGT00950000183089.d #37
Amazon molly	MODERN SPECIES	277	ENSPFOG00000018691 #7	naa35 (ENSPFOG00000018700) #8	agtpbp1 (ENSPFOG00000018733) #9	NTRK2 (ENSPFOG00000018778) #10	SLC28A3 (ENSPFOG00000018815) #11	rmi1 (ENSPFOG00000018822) #12	hnrnpk (ENSPFOG00000018830) #13	zgc:136564 (ENSPFOG00000018840) #14	KIF27 (ENSPFOG00000018850) #15	gkap1 (ENSPFOG00000023536) #16	UBQLN1 (ENSPFOG00000018864) #17	IDNK (ENSPFOG00000018882) #18	FRMD3 (ENSPFOG00000018891) #19	RASEF (ENSPFOG00000018924) #20	ENSPFOG00000018960 #21	SMAD4 (ENSPFOG00000018987) #22	mex3b (ENSPFOG00000018999) #23	tmed7 (ENSPFOG00000019005) #24	fem1c (ENSPFOG00000019010) #25	ENSPFOG00000019020	pggt1b (ENSPFOG00000023905) #27	trim36 (ENSPFOG00000019032) #28	CCSER1 (ENSPFOG00000019060) #29	grid2 (ENSPFOG00000019080) #31	atoh1a (ENSPFOG00000019101) #32	ENSPFOG00000019103	ENSPFOG00000021845	smarcad1a (ENSPFOG00000019116) #33	MPEG1 (ENSPFOG00000019131) #36	prf1.5 (ENSPFOG00000019132) #34	MPEG1 (ENSPFOG00000019135) #36
Sailfin molly	MODERN SPECIES	80															ENSPLAG00000002399 #21	SMAD4 (ENSPLAG00000002354) #22	mex3b (ENSPLAG00000002303) #23	tmed7 (ENSPLAG00000002281) #24	fem1c (ENSPLAG00000002273) #25	ENSPLAG00000002255	pggt1b (ENSPLAG00000002239) #27	trim36 (ENSPLAG00000002224) #28	ENSPLAG00000002214 #29	ENSPLAG00000002208 #30
Guppy	MODERN SPECIES	461	ENSPREG00000019409 #7	naa35 (ENSPREG00000019309) #8	agtpbp1 (ENSPREG00000019219) #9	ENSPREG00000019197 #10	SLC28A3 (ENSPREG00000019163) #11	rmi1 (ENSPREG00000019082) #12	hnrnpk (ENSPREG00000018996) #13	zgc:136564 (ENSPREG00000018955) #14	KIF27 (ENSPREG00000018932) #15	gkap1 (ENSPREG00000018905) #16	IDNK (ENSPREG00000018885) #18	UBQLN1 (ENSPREG00000018871) #17	FRMD3 (ENSPREG00000018770) #19	RASEF (ENSPREG00000018728) #20	ENSPREG00000018613 #21	SMAD4 (ENSPREG00000018572) #22	mex3b (ENSPREG00000018559) #23	tmed7 (ENSPREG00000018549) #24	fem1c (ENSPREG00000018531) #25	pggt1b (ENSPREG00000018501) #27	trim36 (ENSPREG00000018400) #28	CCSER1 (ENSPREG00000018353) #29	grid2 (ENSPREG00000018297) #31	atoh1a (ENSPREG00000018256) #32	smarcad1a (ENSPREG00000018185) #33	prf1.5 (ENSPREG00000018141) #34	mpeg1.2 (ENSPREG00000018128) #36	si:ch211-103n10.5 (ENSPREG00000018117) #37	tspan36 (ENSPREG00000018105)	mapk4 (ENSPREG00000018092)	me2 (ENSPREG00000018059)
Platyfish	MODERN SPECIES	3	dusp2 (ENSXMAG00000014933)	MYORG (ENSXMAG00000012702)	ENSXMAG00000025624	ENSXMAG00000012701	rmi1 (ENSXMAG00000014961) #12	hnrnpk (ENSXMAG00000014985) #13	zgc:136564 (ENSXMAG00000015055) #14	KIF27 (ENSXMAG00000015065) #15	ENSXMAG00000022839	gkap1 (ENSXMAG00000015077) #16	UBQLN1 (ENSXMAG00000026686) #17	IDNK (ENSXMAG00000021838) #18	FRMD3 (ENSXMAG00000015107) #19	RASEF (ENSXMAG00000015129) #20	ENSXMAG00000015157 #21	SMAD4 (ENSXMAG00000024615) #22	mex3b (ENSXMAG00000015283) #23	tmed7 (ENSXMAG00000015287) #24	fem1c (ENSXMAG00000015297) #25	ENSXMAG00000015309	pggt1b (ENSXMAG00000015322) #27	trim36 (ENSXMAG00000015327) #28	CCSER1 (ENSXMAG00000015341) #29	grid2 (ENSXMAG00000025837) #31	ENSXMAG00000026612	atoh1a (ENSXMAG00000015349) #32	smarcad1a (ENSXMAG00000015350) #33	prf1.5 (ENSXMAG00000015380) #34	mpeg1.2 (ENSXMAG00000015389) #36	si:ch211-103n10.5 (ENSXMAG00000021049) #37	tspan36 (ENSXMAG00000027417)
NAME_4	ANCESTRAL SPECIES	140	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29
Sheepshead minnow	MODERN SPECIES	212	naa35 (ENSCVAG00000006514) #8	ENSCVAG00000006418	agtpbp1 (ENSCVAG00000006415) #9	NTRK2 (ENSCVAG00000006368) #10	rmi1 (ENSCVAG00000006285) #12	hnrnpk (ENSCVAG00000006278) #13	zgc:136564 (ENSCVAG00000006263) #14	ENSCVAG00000006237 #15	gkap1 (ENSCVAG00000006234) #16	ENSCVAG00000006226 #17	IDNK (ENSCVAG00000006217) #18	FRMD3 (ENSCVAG00000006189) #19	ENSCVAG00000006176 #19	RASEF (ENSCVAG00000006168) #20	ENSCVAG00000000177 #21	SMAD4 (ENSCVAG00000006109) #22	mex3b (ENSCVAG00000006043) #23	tmed7 (ENSCVAG00000006039) #24	fem1c (ENSCVAG00000006014) #25	pggt1b (ENSCVAG00000005993) #27	trim36 (ENSCVAG00000005963) #28	ENSCVAG00000005947 #29
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33
Pomacentridae	ANCESTRAL SPECIES		ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00990000204450
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Amphiprion	ANCESTRAL SPECIES	10	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850	ENSGT00950000183134.c.b
Orange clownfish	MODERN SPECIES	19	agtpbp1 (ENSAPEG00000003001) #9	NTRK2 (ENSAPEG00000003079) #10	SLC28A3 (ENSAPEG00000003122) #11	rmi1 (ENSAPEG00000003178) #12	hnrnpk (ENSAPEG00000003191) #13	zgc:136564 (ENSAPEG00000003210) #14	ENSAPEG00000003234 #15	ENSAPEG00000003264	gkap1 (ENSAPEG00000003303) #16	ENSAPEG00000003383 #17	IDNK (ENSAPEG00000003410) #18	FRMD3 (ENSAPEG00000003415) #19	ENSAPEG00000003455	RASEF (ENSAPEG00000003461) #20	ENSAPEG00000003485 #21	SMAD4 (ENSAPEG00000003568) #22	ENSAPEG00000003579 #23	tmed7 (ENSAPEG00000003594) #24	fem1c (ENSAPEG00000003603) #25	ENSAPEG00000003631	pggt1b (ENSAPEG00000003651) #27	trim36 (ENSAPEG00000003693) #28	CCSER1 (ENSAPEG00000003762) #29	grid2 (ENSAPEG00000003795) #31	atoh1a (ENSAPEG00000003865) #32	smarcad1a (ENSAPEG00000003889) #33	prf1.5 (ENSAPEG00000003927) #34	mpeg1.2 (ENSAPEG00000003943) #36	tspan36 (ENSAPEG00000003952)	si:ch211-103n10.5 (ENSAPEG00000003963) #37	mapk4 (ENSAPEG00000003989)
Clown anemonefish	MODERN SPECIES	361															ENSAOCG00000021439 #21	SMAD4 (ENSAOCG00000021361) #22	ENSAOCG00000021347 #23
Spiny chromis	MODERN SPECIES	274											IDNK (ENSAPOG00000024406) #18	FRMD3 (ENSAPOG00000024401) #19	ENSAPOG00000024389	RASEF (ENSAPOG00000024369) #20	ENSAPOG00000024295 #21	SMAD4 (ENSAPOG00000024254) #22	ENSAPOG00000024248 #23	tmed7 (ENSAPOG00000024242) #24	fem1c (ENSAPOG00000024235) #25	ENSAPOG00000024217	pggt1b (ENSAPOG00000024184) #27	trim36 (ENSAPOG00000024145) #28	ENSAPOG00000024080 #29
Bicolor damselfish	MODERN SPECIES	684													FRMD3 (ENSSPAG00000002387) #19	RASEF (ENSSPAG00000002442) #20	ENSSPAG00000002458 #21	SMAD4 (ENSSPAG00000002526) #22	ENSSPAG00000002581 #23	tmed7 (ENSSPAG00000002592) #24	fem1c (ENSSPAG00000002608) #25	ENSSPAG00000002639	pggt1b (ENSSPAG00000002667) #27	trim36 (ENSSPAG00000002708) #28	ENSSPAG00000002738 #29
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048.l #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048.l.b #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048.l.b #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048.l.b #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT01090000260066.a.b.l.a.a.a.b.b.b.b.a.a.b	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048.l.b #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Zebra mbuna	MODERN SPECIES	1094	ENSMZEG00005004526 #10	SLC28A3 (ENSMZEG00005004540) #11	ENSMZEG00005004573	rmi1 (ENSMZEG00005004595) #12	hnrnpk (ENSMZEG00005004611) #13	zgc:136564 (ENSMZEG00005004648) #14	KIF27 (ENSMZEG00005004665) #15	gkap1 (ENSMZEG00005004690) #16	UBQLN1 (ENSMZEG00005004709) #17	IDNK (ENSMZEG00005004724) #18	FRMD3 (ENSMZEG00005004753) #19	ENSMZEG00005004800 #19	ENSMZEG00005004807	RASEF (ENSMZEG00005004819) #20	ENSMZEG00005004858 #21	SMAD4 (ENSMZEG00005004897) #22	ENSMZEG00005004908 #23	tmed7 (ENSMZEG00005004914) #24	fem1c (ENSMZEG00005004920) #25	ENSMZEG00005004937	pggt1b (ENSMZEG00005004958) #27	trim36 (ENSMZEG00005004990) #28	CCSER1 (ENSMZEG00005005127) #29	ENSMZEG00005005141	ENSMZEG00005005149	ENSMZEG00005005154 #30	grid2 (ENSMZEG00005005165) #31	atoh1a (ENSMZEG00005005199) #32	smarcad1a (ENSMZEG00005005203) #33	prf1.5 (ENSMZEG00005005222) #34	mpeg1.2 (ENSMZEG00005005244) #36
Eastern happy	MODERN SPECIES	3	SLC28A3 (ENSACLG00000018317) #11	rmi1 (ENSACLG00000018298) #12	hnrnpk (ENSACLG00000018220) #13	ENSACLG00000018206	zgc:136564 (ENSACLG00000018161) #14	KIF27 (ENSACLG00000018127) #15	ENSACLG00000018107	gkap1 (ENSACLG00000018078) #16	ENSACLG00000018050 #17	IDNK (ENSACLG00000018021) #18	FRMD3 (ENSACLG00000017916) #19	ENSACLG00000017877	ENSACLG00000017859	RASEF (ENSACLG00000017818) #20	ENSACLG00000017708 #21	SMAD4 (ENSACLG00000017640) #22	ENSACLG00000017634 #23	tmed7 (ENSACLG00000017622) #24	fem1c (ENSACLG00000017601) #25	ENSACLG00000017572	pggt1b (ENSACLG00000017539) #27	trim36 (ENSACLG00000017427) #28	CCSER1 (ENSACLG00000017382) #29	ENSACLG00000017363	ENSACLG00000017358 #30	ENSACLG00000017280	grid2 (ENSACLG00000017186) #31	atoh1a (ENSACLG00000017166) #32	smarcad1a (ENSACLG00000017063) #33	prf1.5 (ENSACLG00000017037) #34	MPEG1 (ENSACLG00000017016) #36
P. nyererei	MODERN SPECIES	301	NTRK2 (ENSPNYG00000011160) #10	SLC28A3 (ENSPNYG00000010923) #11	rmi1 (ENSPNYG00000010885) #12	hnrnpk (ENSPNYG00000010838) #13	zgc:136564 (ENSPNYG00000010829) #14	ENSPNYG00000010817 #15	ENSPNYG00000010805	gkap1 (ENSPNYG00000010792) #16	ENSPNYG00000010773 #17	IDNK (ENSPNYG00000010763) #18	FRMD3 (ENSPNYG00000010715) #19	ENSPNYG00000010694 #19	ENSPNYG00000010680	RASEF (ENSPNYG00000010579) #20	ENSPNYG00000010511 #21	SMAD4 (ENSPNYG00000010448) #22	ENSPNYG00000010418 #23	tmed7 (ENSPNYG00000010405) #24	fem1c (ENSPNYG00000010383) #25	ENSPNYG00000010350 #26	pggt1b (ENSPNYG00000010326) #27	trim36 (ENSPNYG00000010292) #28	CCSER1 (ENSPNYG00000010248) #29	ENSPNYG00000010224 #30	grid2 (ENSPNYG00000010183) #31	atoh1a (ENSPNYG00000010136) #32	smarcad1a (ENSPNYG00000010087) #33	prf1.5 (ENSPNYG00000010054) #34	MPEG1 (ENSPNYG00000010040) #36	si:ch211-103n10.5 (ENSPNYG00000009985) #37	tspan36 (ENSPNYG00000009942)
Burton s mouthbrooder	MODERN SPECIES	283	naa35 (ENSHBUG00000010050) #8	agtpbp1 (ENSHBUG00000010183) #9	NTRK2 (ENSHBUG00000010215) #10	SLC28A3 (ENSHBUG00000010235) #11	rmi1 (ENSHBUG00000010243) #12	hnrnpk (ENSHBUG00000010255) #13	ENSHBUG00000010266 #15	zgc:136564 (ENSHBUG00000010269) #14	ENSHBUG00000010278	gkap1 (ENSHBUG00000010291) #16	ENSHBUG00000010312 #17	IDNK (ENSHBUG00000000270) #18	FRMD3 (ENSHBUG00000010332) #19	RASEF (ENSHBUG00000010345) #20	ENSHBUG00000010435 #21	SMAD4 (ENSHBUG00000010531) #22	ENSHBUG00000010552 #23	tmed7 (ENSHBUG00000010564) #24	fem1c (ENSHBUG00000010591) #25	ENSHBUG00000010602 #26	pggt1b (ENSHBUG00000010629) #27	trim36 (ENSHBUG00000010912) #28	CCSER1 (ENSHBUG00000010939) #29	grid2 (ENSHBUG00000011010) #31	atoh1a (ENSHBUG00000011023) #32	smarcad1a (ENSHBUG00000011042) #33	prf1.5 (ENSHBUG00000011065) #34	mpeg1.2 (ENSHBUG00000011073) #36	si:ch211-103n10.5 (ENSHBUG00000011078) #37	tspan36 (ENSHBUG00000011085)	mapk4 (ENSHBUG00000011131)
Lyretail cichlid	MODERN SPECIES	306	agtpbp1 (ENSNBRG00000011767) #9	NTRK2 (ENSNBRG00000011797) #10	ENSNBRG00000011822	SLC28A3 (ENSNBRG00000011891) #11	rmi1 (ENSNBRG00000012155) #12	hnrnpk (ENSNBRG00000012167) #13	zgc:136564 (ENSNBRG00000012207) #14	ENSNBRG00000012221 #15	gkap1 (ENSNBRG00000012231) #16	ENSNBRG00000012246 #17	ENSNBRG00000012262 #18	FRMD3 (ENSNBRG00000012272) #19	ENSNBRG00000012321	RASEF (ENSNBRG00000012335) #20	ENSNBRG00000012385 #21	SMAD4 (ENSNBRG00000012448) #22	ENSNBRG00000012485 #23	tmed7 (ENSNBRG00000012507) #24	fem1c (ENSNBRG00000012522) #25	ENSNBRG00000012540 #26	pggt1b (ENSNBRG00000012580) #27	trim36 (ENSNBRG00000012611) #28	CCSER1 (ENSNBRG00000012650) #29	ENSNBRG00000012686	ENSNBRG00000012698 #30	grid2 (ENSNBRG00000012712) #31	atoh1a (ENSNBRG00000012739) #32	smarcad1a (ENSNBRG00000012749) #33	prf1.5 (ENSNBRG00000012779) #34	MPEG1 (ENSNBRG00000012811) #36	MPEG1 (ENSNBRG00000012820) #36
Nile tilapia	MODERN SPECIES	3	ENSONIG00000038512	SLC28A3 (ENSONIG00000014999) #11	rmi1 (ENSONIG00000015001) #12	hnrnpk (ENSONIG00000015002) #13	zgc:136564 (ENSONIG00000015007) #14	KIF27 (ENSONIG00000015008) #15	ENSONIG00000042634	gkap1 (ENSONIG00000015010) #16	ENSONIG00000029651 #17	ENSONIG00000043191 #17	IDNK (ENSONIG00000029581) #18	FRMD3 (ENSONIG00000015018) #19	ENSONIG00000036497	RASEF (ENSONIG00000015021) #20	ENSONIG00000015027 #21	SMAD4 (ENSONIG00000041783) #22	ENSONIG00000037742 #23	tmed7 (ENSONIG00000015039) #24	fem1c (ENSONIG00000015041) #25	ENSONIG00000015042	pggt1b (ENSONIG00000042191) #27	trim36 (ENSONIG00000015049) #28	CCSER1 (ENSONIG00000015052) #29	grid2 (ENSONIG00000015054) #31	atoh1a (ENSONIG00000015058) #32	smarcad1a (ENSONIG00000015059) #33	prf1.5 (ENSONIG00000041518) #34	mpeg1.2 (ENSONIG00000042060) #36	si:ch211-103n10.5 (ENSONIG00000034485) #37	tspan36 (ENSONIG00000042291)	mapk4 (ENSONIG00000015070)
Midas cichlid	MODERN SPECIES	630	rmi1 (ENSACIG00000005305) #12	hnrnpk (ENSACIG00000005320) #13	zgc:136564 (ENSACIG00000005341) #14	ENSACIG00000005360 #15	ENSACIG00000005370	gkap1 (ENSACIG00000005379) #16	ENSACIG00000005399 #17	IDNK (ENSACIG00000005410) #18	FRMD3 (ENSACIG00000005425) #19	ENSACIG00000005459 #19	ENSACIG00000005532	RASEF (ENSACIG00000005549) #20	ENSACIG00000005577 #21	ENSACIG00000005602 ##21	ENSACIG00000005623	SMAD4 (ENSACIG00000005628) #22	ENSACIG00000005655 #23	tmed7 (ENSACIG00000005681) #24	fem1c (ENSACIG00000005693) #25
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432.b	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Carangaria	ANCESTRAL SPECIES	9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487.t #15	ENSGT00940000169432.b	ENSGT00940000157487.s #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487.t #15	ENSGT00940000169432.b	ENSGT00940000157487.s #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Seriola	ANCESTRAL SPECIES	35	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.d.b.a.a	ENSGT00940000157487.s #15	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Greater amberjack	MODERN SPECIES	98	SLC28A3 (ENSSDUG00000022144) #11	rmi1 (ENSSDUG00000022159) #12	hnrnpk (ENSSDUG00000022165) #13	ENSSDUG00000022176	zgc:136564 (ENSSDUG00000022179) #14	ENSSDUG00000022185	KIF27 (ENSSDUG00000022190) #15	gkap1 (ENSSDUG00000022199) #16	UBQLN1 (ENSSDUG00000022203) #17	ENSSDUG00000022206 #18	FRMD3 (ENSSDUG00000022212) #19	ENSSDUG00000022222 #19	ENSSDUG00000022225	RASEF (ENSSDUG00000022228) #20	ENSSDUG00000022233 #21	SMAD4 (ENSSDUG00000022248) #22	ENSSDUG00000022255 #23	tmed7 (ENSSDUG00000022263) #24	fem1c (ENSSDUG00000022265) #25	tmed7 (ENSSDUG00000022269) #24	CCDC112 (ENSSDUG00000022281) #26	pggt1b (ENSSDUG00000022293) #27	trim36 (ENSSDUG00000022305) #28	CCSER1 (ENSSDUG00000022318) #29	ENSSDUG00000022322 #30	grid2 (ENSSDUG00000022325) #31	atoh1a (ENSSDUG00000022334) #32	smarcad1a (ENSSDUG00000022338) #33	prf1.5 (ENSSDUG00000022351) #34	mpeg1.2 (ENSSDUG00000022363) #36	si:ch211-103n10.5 (ENSSDUG00000022366) #37
Yellowtail amberjack	MODERN SPECIES	3242	gstt1a (ENSSLDG00000024728)	MMP11 (ENSSLDG00000024735)	derl3 (ENSSLDG00000024745)	SMARCB1 (ENSSLDG00000024753)	ralgds (ENSSLDG00000024773)	ptgesl (ENSSLDG00000024794)	gle1 (ENSSLDG00000024801)	ENSSLDG00000024808	si:ch211-51h9.7 (ENSSLDG00000024814)	SET (ENSSLDG00000024820)	ENSSLDG00000024829	zdhhc12a (ENSSLDG00000024843)	slc25a25a (ENSSLDG00000024848)	EEIG1 (ENSSLDG00000024859)	ENSSLDG00000024880 #21	SMAD4 (ENSSLDG00000024901) #22	ENSSLDG00000024917 #23	tmed7 (ENSSLDG00000024920) #24	fem1c (ENSSLDG00000024922) #25	CCDC112 (ENSSLDG00000024928) #26	pggt1b (ENSSLDG00000024935) #27	trim36 (ENSSLDG00000024945) #28	CCSER1 (ENSSLDG00000024954) #29	grid2 (ENSSLDG00000024958) #31	ENSSLDG00000024976	atoh1a (ENSSLDG00000024982) #32	smarcad1a (ENSSLDG00000024986) #33	prf1.5 (ENSSLDG00000024998) #34	mpeg1.2 (ENSSLDG00000025001) #36	si:ch211-103n10.5 (ENSSLDG00000025005) #37	tspan36 (ENSSLDG00000025011)
Barramundi perch	MODERN SPECIES	95	SLC28A3 (ENSLCAG00010028331) #11	rmi1 (ENSLCAG00010028332) #12	hnrnpk (ENSLCAG00010028333) #13	zgc:136564 (ENSLCAG00010028334) #14	ENSLCAG00010028335 #15	ENSLCAG00010000207	ENSLCAG00010000220 #15	gkap1 (ENSLCAG00010000243) #16	ENSLCAG00010000262	ENSLCAG00010000271 #17	IDNK (ENSLCAG00010000288) #18	FRMD3 (ENSLCAG00010000347) #19	ENSLCAG00010000406	RASEF (ENSLCAG00010000419) #20	ENSLCAG00010000663 #21	SMAD4 (ENSLCAG00010000908) #22	ENSLCAG00010000930 #23	tmed7 (ENSLCAG00010000934) #24	fem1c (ENSLCAG00010000938) #25	CCDC112 (ENSLCAG00010000942) #26	pggt1b (ENSLCAG00010000949) #27	trim36 (ENSLCAG00010000961) #28	CCSER1 (ENSLCAG00010000970) #29	grid2 (ENSLCAG00010000999) #31	atoh1a (ENSLCAG00010001044) #32	smarcad1a (ENSLCAG00010001088) #33	prf1.5 (ENSLCAG00010001282) #34	mpeg1.2 (ENSLCAG00010001284) #36	si:ch211-103n10.5 (ENSLCAG00010001288) #37	tspan36 (ENSLCAG00010001294)	mapk4 (ENSLCAG00010001302)
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000169432.b	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Turbot	MODERN SPECIES	21	ENSSMAG00000019221 #7	naa35 (ENSSMAG00000019239) #8	agtpbp1 (ENSSMAG00000019334) #9	NTRK2 (ENSSMAG00000019401) #10	SLC28A3 (ENSSMAG00000019418) #11	rmi1 (ENSSMAG00000019443) #12	hnrnpk (ENSSMAG00000019461) #13	zgc:136564 (ENSSMAG00000019492) #14	gkap1 (ENSSMAG00000000816) #16	ENSSMAG00000000826 #17	IDNK (ENSSMAG00000000863) #18	FRMD3 (ENSSMAG00000000874) #19	ENSSMAG00000000898	RASEF (ENSSMAG00000000942) #20	ENSSMAG00000000964 #21	ENSSMAG00000001029 #22	ENSSMAG00000001075 #23	TMED7 (ENSSMAG00000001106) #24	ENSSMAG00000001129 #25	ENSSMAG00000001161	TRIM36 (ENSSMAG00000001201) #28	CCSER1 (ENSSMAG00000001219) #29	grid2 (ENSSMAG00000001237) #31	atoh1a (ENSSMAG00000001293) #32	smarcad1a (ENSSMAG00000001326) #33	prf1.5 (ENSSMAG00000028860) #34	mpeg1.3 (ENSSMAG00000001357) #36	si:ch211-103n10.5 (ENSSMAG00000030927) #37	tspan36 (ENSSMAG00000001361)	mapk4 (ENSSMAG00000001375)	ENSSMAG00000001399
Tongue sole	MODERN SPECIES	398	CCNO (ENSCSEG00000007047)	ENSCSEG00000007042	gpx8 (ENSCSEG00000007032)	CDC20B (ENSCSEG00000007020)	ENSCSEG00000007013	ENSCSEG00000007008	ENSCSEG00000006994	pmpca (ENSCSEG00000006950)	inpp5e (ENSCSEG00000006938)	ENSCSEG00000006928	notch1b (ENSCSEG00000006898)	ubac1 (ENSCSEG00000006892)	ENSCSEG00000006890	ENSCSEG00000006885	ENSCSEG00000006838 #21	SMAD4 (ENSCSEG00000006818) #22	ENSCSEG00000006809 #23	tmed7 (ENSCSEG00000006788) #24	fem1c (ENSCSEG00000006770) #25	ENSCSEG00000006753	pggt1b (ENSCSEG00000006738) #27	trim36 (ENSCSEG00000006535) #28	ENSCSEG00000006508 #29	KCNT1 (ENSCSEG00000006453)	ENSCSEG00000006442	ENSCSEG00000006435	ENSCSEG00000006430	zgc:101858 (ENSCSEG00000006409)	LRRC8A (ENSCSEG00000006406)	hscb (ENSCSEG00000006402)	rtn4r (ENSCSEG00000006397)
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00940000169432.b	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850	ENSGT00950000183134.c.b
Zig-zag eel	MODERN SPECIES	23	NTRK2 (ENSMAMG00000001925) #10	SLC28A3 (ENSMAMG00000001879) #11	rmi1 (ENSMAMG00000001809) #12	hnrnpk (ENSMAMG00000001787) #13	zgc:136564 (ENSMAMG00000025686) #14	ENSMAMG00000001772 #15	ENSMAMG00000028653	gkap1 (ENSMAMG00000001670) #16	ENSMAMG00000001630 #17	IDNK (ENSMAMG00000024372) #18	FRMD3 (ENSMAMG00000001600) #19	ENSMAMG00000001583	ENSMAMG00000024780	RASEF (ENSMAMG00000001536) #20	ENSMAMG00000001458 #21	ENSMAMG00000001386 #22	ENSMAMG00000001370 #23	TMED7 (ENSMAMG00000001344) #24	FEM1C (ENSMAMG00000001315) #25	CCDC112 (ENSMAMG00000001250) #26	TRIM36 (ENSMAMG00000001138) #28	CCSER1 (ENSMAMG00000001072) #29	ENSMAMG00000024935	grid2 (ENSMAMG00000000999) #31	atoh1a (ENSMAMG00000000960) #32	smarcad1a (ENSMAMG00000000933) #33	prf1.5 (ENSMAMG00000026104) #34	mpeg1.3 (ENSMAMG00000000887) #36	si:ch211-103n10.5 (ENSMAMG00000000824) #37	tspan36 (ENSMAMG00000000801)	mapk4 (ENSMAMG00000000736)
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850	ENSGT00950000183134.c.b
Climbing perch	MODERN SPECIES	22	ENSATEG00000029703 #7	naa35 (ENSATEG00000014524) #8	agtpbp1 (ENSATEG00000014559) #9	NTRK2 (ENSATEG00000014637) #10	SLC28A3 (ENSATEG00000014661) #11	rmi1 (ENSATEG00000014694) #12	hnrnpk (ENSATEG00000014700) #13	zgc:136564 (ENSATEG00000014747) #14	ENSATEG00000014795 #15	gkap1 (ENSATEG00000014842) #16	UBQLN1 (ENSATEG00000014854) #17	IDNK (ENSATEG00000029086) #18	FRMD3 (ENSATEG00000014942) #19	RASEF (ENSATEG00000015032) #20	ENSATEG00000015060 #21	ENSATEG00000015137 #22	ENSATEG00000015187 #23	TMED7 (ENSATEG00000025319) #24	fem1c (ENSATEG00000015228) #25	PGGT1B (ENSATEG00000015408) #27	trim36 (ENSATEG00000029984) #28	ENSATEG00000027587 #29	CCSER1 (ENSATEG00000015381) #29	ENSATEG00000025952 #28	grid2 (ENSATEG00000015516) #31	atoh1a (ENSATEG00000015582) #32	smarcad1a (ENSATEG00000015608) #33	prf1.5 (ENSATEG00000028939) #34	mpeg1.3 (ENSATEG00000015677) #36	tspan36 (ENSATEG00000015690)	si:ch211-103n10.5 (ENSATEG00000015719) #37
Siamese fighting fish	MODERN SPECIES	20	ENSBSLG00000002595	naa35 (ENSBSLG00000002626) #8	agtpbp1 (ENSBSLG00000002867) #9	NTRK2 (ENSBSLG00000003726) #10	rmi1 (ENSBSLG00000003826) #12	hnrnpk (ENSBSLG00000003905) #13	zgc:136564 (ENSBSLG00000004010) #14	KIF27 (ENSBSLG00000004037) #15	ENSBSLG00000004078	gkap1 (ENSBSLG00000004088) #16	UBQLN1 (ENSBSLG00000004127) #17	IDNK (ENSBSLG00000004154) #18	FRMD3 (ENSBSLG00000004220) #19	RASEF (ENSBSLG00000004807) #20	ENSBSLG00000005209 #21	SMAD4 (ENSBSLG00000006078) #22	ENSBSLG00000006087 #23	tmed7 (ENSBSLG00000006091) #24	fem1c (ENSBSLG00000006092) #25	ENSBSLG00000006308 #26	pggt1b (ENSBSLG00000006426) #27	trim36 (ENSBSLG00000006686) #28	CCSER1 (ENSBSLG00000006910) #29	grid2 (ENSBSLG00000006957) #31	atoh1a (ENSBSLG00000007250) #32	smarcad1a (ENSBSLG00000007262) #33	prf1.5 (ENSBSLG00000007424) #34	mpeg1.2 (ENSBSLG00000007426) #36	si:ch211-103n10.5 (ENSBSLG00000007434) #37	tspan36 (ENSBSLG00000007719)	mapk4 (ENSBSLG00000007750)
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00390000018651.b	ENSGT00530000063675.b	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00940000164634	ENSGT00940000159850
Fugu	MODERN SPECIES	13	naa35 (ENSTRUG00000008637) #8	agtpbp1 (ENSTRUG00000009063) #9	NTRK2 (ENSTRUG00000009674) #10	SLC28A3 (ENSTRUG00000010280) #11	rmi1 (ENSTRUG00000010577) #12	hnrnpk (ENSTRUG00000010659) #13	zgc:136564 (ENSTRUG00000021195) #14	ENSTRUG00000031226	ENSTRUG00000023266	gkap1 (ENSTRUG00000011213) #16	IDNK (ENSTRUG00000029238) #18	ENSTRUG00000027897	FRMD3 (ENSTRUG00000011338) #19	RASEF (ENSTRUG00000011541) #20	ENSTRUG00000011681 #21	SMAD4 (ENSTRUG00000011769) #22	ENSTRUG00000011888 #23	tmed7 (ENSTRUG00000019910) #24	fem1c (ENSTRUG00000023731) #25	CCDC112 (ENSTRUG00000027710) #26	pggt1b (ENSTRUG00000012182) #27	trim36 (ENSTRUG00000012235) #28	CCSER1 (ENSTRUG00000012411) #29	grid2 (ENSTRUG00000012431) #31	atoh1a (ENSTRUG00000029412) #32	smarcad1a (ENSTRUG00000025900) #33	prf1.5 (ENSTRUG00000012796) #34	mpeg1.2 (ENSTRUG00000012860) #36	ENSTRUG00000021253	tspan36 (ENSTRUG00000012904)	mapk4 (ENSTRUG00000012974)
Tetraodon	MODERN SPECIES	3	LMBRD2 (ENSTNIG00000015795)	naa35 (ENSTNIG00000015794) #8	agtpbp1 (ENSTNIG00000015793) #9	NTRK2 (ENSTNIG00000015792) #10	SLC28A3 (ENSTNIG00000006003) #11	rmi1 (ENSTNIG00000006004) #12	hnrnpk (ENSTNIG00000006005) #13	zgc:136564 (ENSTNIG00000001428) #14	ENSTNIG00000006006	gkap1 (ENSTNIG00000006007) #16	IDNK (ENSTNIG00000006008) #18	FRMD3 (ENSTNIG00000006009) #19	RASEF (ENSTNIG00000006010) #20	ENSTNIG00000002192 #21	ENSTNIG00000002574 #21	SMAD4 (ENSTNIG00000003193) #22	tmed7 (ENSTNIG00000003194) #24	fem1c (ENSTNIG00000003195) #25	CCDC112 (ENSTNIG00000003196) #26	pggt1b (ENSTNIG00000003197) #27	trim36 (ENSTNIG00000003198) #28	CCSER1 (ENSTNIG00000003199) #29	grid2 (ENSTNIG00000017583) #31	atoh1a (ENSTNIG00000017584) #32	smarcad1a (ENSTNIG00000017585) #33	prf1.5 (ENSTNIG00000017586) #34	mpeg1.2 (ENSTNIG00000017587) #36	tspan36 (ENSTNIG00000017588)	mapk4 (ENSTNIG00000017589)	me2 (ENSTNIG00000017590)	elac1 (ENSTNIG00000017591)
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Ballan wrasse	MODERN SPECIES	199															ENSLBEG00000007412 #21	SMAD4 (ENSLBEG00000007538) #22	ENSLBEG00000007607 #23	tmed7 (ENSLBEG00000007625) #24	fem1c (ENSLBEG00000007646) #25	CCDC112 (ENSLBEG00000007689) #26	pggt1b (ENSLBEG00000007759) #27	trim36 (ENSLBEG00000007864) #28	CCSER1 (ENSLBEG00000007928) #29	ENSLBEG00000007966 #30	grid2 (ENSLBEG00000007991) #31	atoh1a (ENSLBEG00000008050) #32	smarcad1a (ENSLBEG00000008088) #33	prf1.5 (ENSLBEG00000008154) #34	MPEG1 (ENSLBEG00000008183) #36	MPEG1 (ENSLBEG00000008207) #36
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Perciformes	ANCESTRAL SPECIES	6	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
Lumpfish	MODERN SPECIES	24	agtpbp1 (ENSCLMG00005002568) #9	NTRK2 (ENSCLMG00005002562) #10	SLC28A3 (ENSCLMG00005002559) #11	rmi1 (ENSCLMG00005002558) #12	hnrnpk (ENSCLMG00005002554) #13	zgc:136564 (ENSCLMG00005002549) #14	ENSCLMG00005002548 #15	ENSCLMG00005002547	gkap1 (ENSCLMG00005002546) #16	ENSCLMG00005002545 #17	IDNK (ENSCLMG00005002544) #18	FRMD3 (ENSCLMG00005002542) #19	ENSCLMG00005002541 #19	RASEF (ENSCLMG00005002540) #20	ENSCLMG00005002485 #21	SMAD4 (ENSCLMG00005002475) #22	ENSCLMG00005002470 #23	tmed7 (ENSCLMG00005002466) #24	fem1c (ENSCLMG00005002464) #25	CCDC112 (ENSCLMG00005002461) #26	pggt1b (ENSCLMG00005002334) #27	trim36 (ENSCLMG00005002329) #28	CCSER1 (ENSCLMG00005002328) #29	grid2 (ENSCLMG00005002318) #31	atoh1a (ENSCLMG00005002307) #32	smarcad1a (ENSCLMG00005001923) #33	prf1.5 (ENSCLMG00005001901) #34	mpeg1.2 (ENSCLMG00005001899) #36	ENSCLMG00005001897	tspan36 (ENSCLMG00005001892)	mapk4 (ENSCLMG00005001823)
Stickleback	MODERN SPECIES	12	lmbrd2a (ENSGACG00000007686)	GOLM1 (ENSGACG00000007679)	naa35 (ENSGACG00000007653) #8	agtpbp1 (ENSGACG00000007638) #9	ENSGACG00000007634	NTRK2 (ENSGACG00000007625) #10	rmi1 (ENSGACG00000007616) #12	hnrnpk (ENSGACG00000007581) #13	zgc:136564 (ENSGACG00000007576) #14	KIF27 (ENSGACG00000007564) #15	gkap1 (ENSGACG00000007551) #16	ENSGACG00000007544	FRMD3 (ENSGACG00000007535) #19	RASEF (ENSGACG00000007528) #20	ENSGACG00000007510 #21	SMAD4 (ENSGACG00000007495) #22	ENSGACG00000007490 #23	tmed7 (ENSGACG00000007420) #24	fem1c (ENSGACG00000007406) #25	ENSGACG00000007399 #26	pggt1b (ENSGACG00000007394) #27	trim36 (ENSGACG00000007382) #28	CCSER1 (ENSGACG00000007377) #29	ENSGACG00000007375 #30	grid2 (ENSGACG00000007345) #31	atoh1a (ENSGACG00000007342) #32	ENSGACG00000007338	smarcad1a (ENSGACG00000007327) #33	prf1.5 (ENSGACG00000007321) #34	mpeg1.2 (ENSGACG00000007315) #36	si:ch211-103n10.5 (ENSGACG00000007312) #37
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00390000002445 #8	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT01090000260294	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850	ENSGT00950000183134.c.b
Pike perch	MODERN SPECIES	23	agtpbp1 (ENSSLUG00000017113) #9	NTRK2 (ENSSLUG00000005234) #10	SLC28A3 (ENSSLUG00000005308) #11	rmi1 (ENSSLUG00000005327) #12	hnrnpk (ENSSLUG00000005395) #13	zgc:136564 (ENSSLUG00000005467) #14	ENSSLUG00000005473 #15	ENSSLUG00000005479 #15	gkap1 (ENSSLUG00000005502) #16	ENSSLUG00000005515 #17	IDNK (ENSSLUG00000005521) #18	ENSSLUG00000005529 #19	ENSSLUG00000005540 #19	RASEF (ENSSLUG00000005565) #20	ENSSLUG00000005691 #21	SMAD4 (ENSSLUG00000007682) #22	ENSSLUG00000007725 #23	tmed7 (ENSSLUG00000007732) #24	fem1c (ENSSLUG00000007752) #25	ENSSLUG00000007765	pggt1b (ENSSLUG00000007780) #27	trim36 (ENSSLUG00000007809) #28	CCSER1 (ENSSLUG00000007867) #29	grid2 (ENSSLUG00000007893) #31	ENSSLUG00000007950	atoh1a (ENSSLUG00000007954) #32	smarcad1a (ENSSLUG00000007968) #33	prf1.5 (ENSSLUG00000008271) #34	mpeg1.2 (ENSSLUG00000008277) #36	si:ch211-103n10.5 (ENSSLUG00000008278) #37	tspan36 (ENSSLUG00000008283)
Channel bull blenny	MODERN SPECIES	23	naa35 (ENSCGOG00000006460) #8	agtpbp1 (ENSCGOG00000006909) #9	NTRK2 (ENSCGOG00000007505) #10	SLC28A3 (ENSCGOG00000008082) #11	rmi1 (ENSCGOG00000008102) #12	hnrnpk (ENSCGOG00000008108) #13	zgc:136564 (ENSCGOG00000008131) #14	ENSCGOG00000008135 #15	ENSCGOG00000008139	gkap1 (ENSCGOG00000008142) #16	ENSCGOG00000008145 #17	IDNK (ENSCGOG00000008149) #18	FRMD3 (ENSCGOG00000008153) #19	RASEF (ENSCGOG00000008186) #20	ENSCGOG00000008348 #21	SMAD4 (ENSCGOG00000013431) #22	ENSCGOG00000013476 #23	tmed7 (ENSCGOG00000013479) #24	fem1c (ENSCGOG00000013496) #25	ENSCGOG00000013497 #26	pggt1b (ENSCGOG00000013512) #27	trim36 (ENSCGOG00000013769) #28	CCSER1 (ENSCGOG00000013972) #29	grid2 (ENSCGOG00000013975) #31	atoh1a (ENSCGOG00000014076) #32	smarcad1a (ENSCGOG00000014079) #33	prf1.5 (ENSCGOG00000014245) #34	mpeg1.2 (ENSCGOG00000014256) #36	si:ch211-103n10.5 (ENSCGOG00000014258) #37	tspan36 (ENSCGOG00000014262)	mapk4 (ENSCGOG00000014278)
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634
Gilthead seabream	MODERN SPECIES	19	naa35 (ENSSAUG00010010550) #8	agtpbp1 (ENSSAUG00010009347) #9	NTRK2 (ENSSAUG00010009211) #10	SLC28A3 (ENSSAUG00010009173) #11	rmi1 (ENSSAUG00010009168) #12	hnrnpk (ENSSAUG00010009140) #13	zgc:136564 (ENSSAUG00010009131) #14	ENSSAUG00010009130	gkap1 (ENSSAUG00010009126) #16	ENSSAUG00010009122 #17	IDNK (ENSSAUG00010009119) #18	FRMD3 (ENSSAUG00010008144) #19	ENSSAUG00010008137	RASEF (ENSSAUG00010008132) #20	ENSSAUG00010006914 #21	SMAD4 (ENSSAUG00010006877) #22	ENSSAUG00010006874 #23	tmed7 (ENSSAUG00010006845) #24	fem1c (ENSSAUG00010006841) #25	CCDC112 (ENSSAUG00010006807) #26	trim36 (ENSSAUG00010006764) #28	CCSER1 (ENSSAUG00010006757) #29	grid2 (ENSSAUG00010005565) #31	atoh1a (ENSSAUG00010005548) #32	smarcad1a (ENSSAUG00010005507) #33	mpeg1.2 (ENSSAUG00010005496) #36	si:ch211-103n10.5 (ENSSAUG00010005492) #37	tspan36 (ENSSAUG00010005487)	mapk4 (ENSSAUG00010005482)	me2 (ENSSAUG00010005189)	elac1 (ENSSAUG00010005166)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00940000157707 #9	ENSGT00940000155181.c.a #10	ENSGT00390000016025.a #11	ENSGT00940000161055 #12	ENSGT00940000153434.c.a #13	ENSGT00390000002374 #14	ENSGT00940000157487 #15	ENSGT00940000169432	ENSGT00390000008742 #16	ENSGT00940000156437 #17	ENSGT00390000003364 #18	ENSGT00940000158577 #19	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d #37	ENSGT00940000164634	ENSGT00940000159850
European seabass	MODERN SPECIES	13	naa35 (ENSDLAG00005017812) #8	agtpbp1 (ENSDLAG00005017854) #9	NTRK2 (ENSDLAG00005029105) #10	SLC28A3 (ENSDLAG00005018754) #11	rmi1 (ENSDLAG00005033874) #12	hnrnpk (ENSDLAG00005031182) #13	zgc:136564 (ENSDLAG00005018800) #14	ENSDLAG00005018809 #15	ENSDLAG00005018812	gkap1 (ENSDLAG00005028817) #16	IDNK (ENSDLAG00005033278) #18	FRMD3 (ENSDLAG00005018857) #19	ENSDLAG00005026471	RASEF (ENSDLAG00005018997) #20	ENSDLAG00005019047 #21	ENSDLAG00005020688 #22	ENSDLAG00005027349 #23	fem1c (ENSDLAG00005030443) #25	ENSDLAG00005020736	ENSDLAG00005029293 #27	trim36 (ENSDLAG00005020766) #28	CCSER1 (ENSDLAG00005020832) #29	grid2 (ENSDLAG00005020850) #31	atoh1a (ENSDLAG00005021057) #32	smarcad1a (ENSDLAG00005021071) #33	prf1.5 (ENSDLAG00005021492) #34	mpeg1.3 (ENSDLAG00005021495) #36	si:ch211-103n10.5 (ENSDLAG00005021497) #37	tspan36 (ENSDLAG00005021500)	mapk4 (ENSDLAG00005034120)	ENSDLAG00005026681
Large yellow croaker	MODERN SPECIES	2	agtpbp1 (ENSLCRG00005011261) #9	NTRK2 (ENSLCRG00005012194) #10	SLC28A3 (ENSLCRG00005012195) #11	rmi1 (ENSLCRG00005012199) #12	hnrnpk (ENSLCRG00005012203) #13	zgc:136564 (ENSLCRG00005012204) #14	KIF27 (ENSLCRG00005012206) #15	ENSLCRG00005012207	gkap1 (ENSLCRG00005012208) #16	UBQLN1 (ENSLCRG00005012209) #17	IDNK (ENSLCRG00005012210) #18	FRMD3 (ENSLCRG00005012212) #19	RASEF (ENSLCRG00005012215) #20	ENSLCRG00005012217	ENSLCRG00005012241 #21	SMAD4 (ENSLCRG00005013595) #22	ENSLCRG00005013642 #23	tmed7 (ENSLCRG00005013643) #24	fem1c (ENSLCRG00005013644) #25	ENSLCRG00005013645	pggt1b (ENSLCRG00005013646) #27	trim36 (ENSLCRG00005013648) #28	CCSER1 (ENSLCRG00005013935) #29	grid2 (ENSLCRG00005013936) #31	atoh1a (ENSLCRG00005014125) #32	smarcad1a (ENSLCRG00005014128) #33	prf1.5 (ENSLCRG00005014736) #34	mpeg1.2 (ENSLCRG00005014737) #36	ENSLCRG00005014738	tspan36 (ENSLCRG00005014740)	mapk4 (ENSLCRG00005014741)
Tiger tail seahorse	MODERN SPECIES	134	agtpbp1 (ENSHCOG00000011343) #9	NTRK2 (ENSHCOG00000011200) #10	SLC28A3 (ENSHCOG00000011170) #11	rmi1 (ENSHCOG00000011132) #12	hnrnpk (ENSHCOG00000011097) #13	zgc:136564 (ENSHCOG00000011087) #14	ENSHCOG00000011079	ENSHCOG00000011072	ENSHCOG00000011059 #15	gkap1 (ENSHCOG00000011045) #16	IDNK (ENSHCOG00000011023) #18	FRMD3 (ENSHCOG00000011009) #19	ENSHCOG00000010983 #19	RASEF (ENSHCOG00000010976) #20	ENSHCOG00000010890 #21	SMAD4 (ENSHCOG00000010832) #22	ENSHCOG00000010812 #23	tmed7 (ENSHCOG00000010792) #24	ENSHCOG00000010742 #25
Pinecone sodierfish	MODERN SPECIES	23	agtpbp1 (ENSMMDG00005024668) #9	NTRK2 (ENSMMDG00005024674) #10	SLC28A3 (ENSMMDG00005024675) #11	rmi1 (ENSMMDG00005024676) #12	hnrnpk (ENSMMDG00005024677) #13	zgc:136564 (ENSMMDG00005024678) #14	ENSMMDG00005024679 #15	gkap1 (ENSMMDG00005024681) #16	UBQLN1 (ENSMMDG00005024682) #17	IDNK (ENSMMDG00005024683) #18	ENSMMDG00005024684 #19	FRMD3 (ENSMMDG00005024685) #19	ENSMMDG00005024686 #19	RASEF (ENSMMDG00005024687) #20	ENSMMDG00005024701 #21	SMAD4 (ENSMMDG00005024765) #22	ENSMMDG00005024771 #23	tmed7 (ENSMMDG00005024772) #24	fem1c (ENSMMDG00005024773) #25	CCDC112 (ENSMMDG00005024774) #26	pggt1b (ENSMMDG00005024775) #27	trim36 (ENSMMDG00005024776) #28	CCSER1 (ENSMMDG00005004184) #29	ENSMMDG00005004192 #30	grid2 (ENSMMDG00005004226) #31	atoh1a (ENSMMDG00005004738) #32	smarcad1a (ENSMMDG00005004747) #33	prf1.5 (ENSMMDG00005004889) #34	mpeg1.2 (ENSMMDG00005004921) #36	si:ch211-103n10.5 (ENSMMDG00005004927) #37	tspan36 (ENSMMDG00005004929)
Cod	MODERN SPECIES	19	ENSGMOG00000011608	rfc5 (ENSGMOG00000011597)	KSR2 (ENSGMOG00000007629)	nos1 (ENSGMOG00000014839)	ENSGMOG00000016792	nipsnap1 (ENSGMOG00000016779)	ENSGMOG00000031271	spring1 (ENSGMOG00000016751)	rnft2 (ENSGMOG00000016732)	fbxw8 (ENSGMOG00000016706)	tesca (ENSGMOG00000016683)	FBXO21 (ENSGMOG00000016647)	nf2a (ENSGMOG00000016615)	ENSGMOG00000005187	ENSGMOG00000005865 #21	ENSGMOG00000005844 #22	ENSGMOG00000026161 #23	TMED7 (ENSGMOG00000005819) #24	fem1c (ENSGMOG00000005806) #25	PGGT1B (ENSGMOG00000005781) #27	trim36 (ENSGMOG00000005757) #28	CCSER1 (ENSGMOG00000005739) #29	ENSGMOG00000029224	ENSGMOG00000026145	grid2 (ENSGMOG00000012315) #31	ENSGMOG00000033769	smarcad1a (ENSGMOG00000018995) #33	prf1.5 (ENSGMOG00000018988) #34	mpeg1.3 (ENSGMOG00000025509) #36	tspan36 (ENSGMOG00000017273)	mapk4 (ENSGMOG00000027904)
Protacanthopterygii	ANCESTRAL SPECIES	74	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A #30	ENSGT00940000155192 #31	ENSGT00940000160064.b #32	ENSGT00910000144252.d.a #33	ENSGT00940000160278	ENSGT00940000164067.C #34	ENSGT00940000164634	ENSGT00940000159850	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a.c	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000163530
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	73	ENSGT00950000183128.A.a #27	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #31	ENSGT00940000160064.b.a #32	ENSGT00910000144252.d.a.d #33	ENSGT00940000160278	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d.d #37	ENSGT00940000164634.k	ENSGT00940000159850.c	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.e	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00950000183128.A.a #27	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #31	ENSGT00940000160064.b.a #32	ENSGT00910000144252.d.a.d #33	ENSGT00940000160278	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00950000183089.d.d #37	ENSGT00940000164634.k	ENSGT00940000159850.c	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.f.b	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
Salmo	ANCESTRAL SPECIES		ENSGT00950000183128.A.a #27	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #31	ENSGT00940000160064.b.a #32	ENSGT00910000144252.d.a.d #33	ENSGT00940000160278	ENSGT00940000164067.C #34	ENSGT00390000008048.h #36	ENSGT00950000183089.d.d #37	ENSGT00940000164634.k	ENSGT00940000159850.c	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.e	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
River trout	MODERN SPECIES	19	ENSSTUG00000030737	grid2 (ENSSTUG00000030753) #31	atoh1a (ENSSTUG00000031039) #32	ENSSTUG00000031048	ENSSTUG00000031052	smarcad1a (ENSSTUG00000031068) #33	HPGDS (ENSSTUG00000031808)	prf1.5 (ENSSTUG00000031842) #34	MPEG1 (ENSSTUG00000031848) #36	si:ch211-103n10.5 (ENSSTUG00000031853) #37	tspan36 (ENSSTUG00000031864)	mapk4 (ENSSTUG00000031881)	me2 (ENSSTUG00000031924)	aptx (ENSSTUG00000033812)	elac1 (ENSSTUG00000033819)	SMAD4 (ENSSTUG00000033858) #22	MEX3C (ENSSTUG00000034058)	STPG2 (ENSSTUG00000034065)	UNC5C (ENSSTUG00000034129)	ENSSTUG00000035850	bmpr1ba (ENSSTUG00000035860)	pdlim5a (ENSSTUG00000036059)	opn4xb (ENSSTUG00000036157)	EGFLAM (ENSSTUG00000036204)	GDNF (ENSSTUG00000036540)	ndc80 (ENSSTUG00000036560)	ndc80 (ENSSTUG00000036721)	nipbla (ENSSTUG00000036815)	slc1a3a (ENSSTUG00000036851)	ENSSTUG00000036895	lmbrd2a (ENSSTUG00000036910)
Atlantic salmon	MODERN SPECIES	16	trim36 (ENSSSAG00000044392) #28	CCSER1 (ENSSSAG00000044369) #29	grid2 (ENSSSAG00000076292) #31	ENSSSAG00000100858	ENSSSAG00000106044	atoh1a (ENSSSAG00000092250) #32	smarcad1a (ENSSSAG00000076233) #33	hpgds (ENSSSAG00000076223)	prf1.5 (ENSSSAG00000076217) #34	mpeg1 (ENSSSAG00000076214) #36	TSN3 (ENSSSAG00000076207)	si:ch211-103n10.5 (ENSSSAG00000082132) #37	mapk4 (ENSSSAG00000093709)	ENSSSAG00000076206	me2 (ENSSSAG00000092707)	SMAD4 (ENSSSAG00000075963) #22	MEX3C (ENSSSAG00000115744)	stpg2 (ENSSSAG00000075952)	UNC5C (ENSSSAG00000075774)	ENSSSAG00000111944	bmpr1ba (ENSSSAG00000075538)	pdlim5a (ENSSSAG00000075509)	opn4xb (ENSSSAG00000075477)	ENSSSAG00000075690	ENSSSAG00000075744	ENSSSAG00000071537	ENSSSAG00000075746	ndc80 (ENSSSAG00000075612)	nipbla (ENSSSAG00000075753)	slc1a3a (ENSSSAG00000075770)	ENSSSAG00000101505
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #31	ENSGT00940000160064.b.a #32	ENSGT00910000144252.d.a.d #33	ENSGT00940000160278	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00970000196811.a.a	ENSGT00950000183089.d.d #37	ENSGT00940000164634.k	ENSGT00940000159850.c	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.f.b	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	12	ENSGT00940000153912.B.i #29	ENSGT00530000064550.A #30	ENSGT00940000155192.u #31	ENSGT00940000160064.b.a #32	ENSGT00910000144252.d.a.d #33	ENSGT00940000160278	ENSGT00940000164067.C #34	ENSGT00390000008048 #36	ENSGT00970000196811.a.a	ENSGT00950000183089.d.d #37	ENSGT00940000164634.k	ENSGT00940000159850.c	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b	ENSGT00940000156871.p.d
Coho salmon	MODERN SPECIES	22	ENSOKIG00005005652	grid2 (ENSOKIG00005005228) #31	atoh1a (ENSOKIG00005005122) #32	ENSOKIG00005005119	ENSOKIG00005005112	smarcad1a (ENSOKIG00005004826) #33	HPGDS (ENSOKIG00005004762)	prf1.5 (ENSOKIG00005004749) #34	mpeg1.2 (ENSOKIG00005004742) #36	si:ch211-103n10.5 (ENSOKIG00005004738) #37	tspan36 (ENSOKIG00005004703)	mapk4 (ENSOKIG00005004699)	me2 (ENSOKIG00005003015)	aptx (ENSOKIG00005002740)	elac1 (ENSOKIG00005002737)	SMAD4 (ENSOKIG00005002696) #22	MEX3C (ENSOKIG00005002673)	STPG2 (ENSOKIG00005002652)	ENSOKIG00005002639	ENSOKIG00005002635	ENSOKIG00005002631	UNC5C (ENSOKIG00005001625)	bmpr1ba (ENSOKIG00005001467)	pdlim5a (ENSOKIG00005001400)	opn4xb (ENSOKIG00005001378)	EGFLAM (ENSOKIG00005001330)	GDNF (ENSOKIG00005001306)	ENSOKIG00005001290	ndc80 (ENSOKIG00005001262)	nipbla (ENSOKIG00005001188)	slc1a3a (ENSOKIG00005001132)
Chinook salmon	MODERN SPECIES	28	nr6a1a (ENSOTSG00005006904)	NR5A1 (ENSOTSG00005006885)	lhx2b (ENSOTSG00005006884)	atoh1a (ENSOTSG00005006883) #32	smarcad1a (ENSOTSG00005006882) #33	HPGDS (ENSOTSG00005006874)	prf1.5 (ENSOTSG00005006873) #34	mpeg1.2 (ENSOTSG00005006872) #36	ENSOTSG00005006871	si:ch211-103n10.5 (ENSOTSG00005006870) #37	tspan36 (ENSOTSG00005006869)	mapk4 (ENSOTSG00005006847)	me2 (ENSOTSG00005005270)	aptx (ENSOTSG00005005264)	elac1 (ENSOTSG00005005263)	SMAD4 (ENSOTSG00005005261) #22	MEX3C (ENSOTSG00005005259)	ENSOTSG00005005256	ENSOTSG00005005255	ENSOTSG00005005254	ENSOTSG00005005253	ENSOTSG00005005251	bcl2l16 (ENSOTSG00005005250)	ENSOTSG00005005248	ccn1l2 (ENSOTSG00005005246)	FKBP15 (ENSOTSG00005000457)	fgf17 (ENSOTSG00005000438)	ENSOTSG00005000435	ENSOTSG00005000432	rchy1 (ENSOTSG00005000428)	ENSOTSG00005000426
Rainbow trout	MODERN SPECIES	27	grid2 (ENSOMYG00000028019) #31	atoh1a (ENSOMYG00000014675) #32	ENSOMYG00000077172	smarcad1a (ENSOMYG00000014627) #33	HPGDS (ENSOMYG00000068733)	prf1.5 (ENSOMYG00000014593) #34	mpeg1.3 (ENSOMYG00000014585) #36	ENSOMYG00000050711	si:ch211-103n10.5 (ENSOMYG00000014573) #37	tspan36 (ENSOMYG00000014552)	ENSOMYG00000062587	mapk4 (ENSOMYG00000014535)	me2 (ENSOMYG00000010461)	aptx (ENSOMYG00000009236)	elac1 (ENSOMYG00000009221)	SMAD4 (ENSOMYG00000009189) #22	MEX3C (ENSOMYG00000075838)	STPG2 (ENSOMYG00000009152)	ENSOMYG00000075329	UNC5C (ENSOMYG00000009126)	bmpr1ba (ENSOMYG00000009032)	pdlim5a (ENSOMYG00000008880)	opn4xb (ENSOMYG00000004122)	ENSOMYG00000004270	rtgdnf (ENSOMYG00000004348)	ENSOMYG00000058117	ENSOMYG00000004439	nipbla (ENSOMYG00000004902)	slc1a3a (ENSOMYG00000005344)	lmbrd2a (ENSOMYG00000006085)	spef2 (ENSOMYG00000007664)
Huchen	MODERN SPECIES	553			grid2 (ENSHHUG00000016142) #31	atoh1a (ENSHHUG00000016173) #32	ENSHHUG00000016175	smarcad1a (ENSHHUG00000016183) #33	HPGDS (ENSHHUG00000016251)	prf1.5 (ENSHHUG00000016290) #34	mpeg1.2 (ENSHHUG00000016297) #36	tspan36 (ENSHHUG00000016304)	si:ch211-103n10.5 (ENSHHUG00000016339) #37	mapk4 (ENSHHUG00000016363)	me2 (ENSHHUG00000016397)	aptx (ENSHHUG00000016673)	elac1 (ENSHHUG00000016674)	SMAD4 (ENSHHUG00000016676) #22	MEX3C (ENSHHUG00000016710)	ENSHHUG00000016713	ENSHHUG00000016726
Salmoninae	ANCESTRAL SPECIES	1077													ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00940000178875
Huchen	MODERN SPECIES	701													RASEF (ENSHHUG00000047429) #20	ENSHHUG00000047466 #21	mapkapk5 (ENSHHUG00000047663)	SMAD4 (ENSHHUG00000047746) #22	ENSHHUG00000047789	ENSHHUG00000047791	ENSHHUG00000047796	ENSHHUG00000047803	ENSHHUG00000047828	PPIC (ENSHHUG00000047832)
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00950000183128.A.b #27	ENSGT00940000158626.l #25	ENSGT00940000158463.d #24	ENSGT00390000018226.i	ENSGT00970000193421.C.a.oc	ENSGT00390000001500.h	ENSGT00940000156565.s.b	ENSGT00940000158343.d.b	ENSGT00910000144204.a.b	ENSGT00940000166026.b	ENSGT00950000183191.b.c	ENSGT00940000156812.e	ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00940000178875	ENSGT00530000064699	ENSGT00940000159244.a.d	ENSGT00950000182925.A.b	ENSGT00950000183125.b.a.a.a.a.b.d
Salmo	ANCESTRAL SPECIES	58			ENSGT00940000154446.b.a.a.a.a.b	ENSGT00940000154308.A.b.b.i.b	ENSGT00440000039084.a.a	ENSGT00950000182843.a.b	ENSGT00940000158664.l	ENSGT00940000162790.b.i.a	ENSGT00990000211660	ENSGT00940000157147.d	ENSGT00950000183125.b.a.a.a.a.b.d	ENSGT00950000182925.A.b	ENSGT00940000159244.a.d	ENSGT00530000064699	ENSGT00940000159786.a	ENSGT00940000157435.a.a.b #22	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000159488.k.a #20	ENSGT00940000156812.e	ENSGT00950000183191.b.c	ENSGT00940000166026.b	ENSGT00910000144204.a.b	ENSGT00940000158343.d.b	ENSGT00940000156565.s.b	ENSGT00390000001500.h	ENSGT00970000193421.C.a.oc	ENSGT00390000018226.i	ENSGT00940000158463.d #24	ENSGT00940000158626.l #25	ENSGT00950000183128.A.b #27	ENSGT00940000158373.n #28
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000071630	snap29 (ENSSSAG00000071637)	ENSSSAG00000099085	ENSSSAG00000071643	ENSSSAG00000071645	ENSSSAG00000086946	ENSSSAG00000071654	ENSSSAG00000108384	ENSSSAG00000087961	ENSSSAG00000071734	ENSSSAG00000111634	ENSSSAG00000074802	ENSSSAG00000116131	ENSSSAG00000074808	ENSSSAG00000074815	ENSSSAG00000074833 #22	ENSSSAG00000116675	ENSSSAG00000108971	ENSSSAG00000075144 #21	ENSSSAG00000078042 #20	ENSSSAG00000078056	ENSSSAG00000082482	ENSSSAG00000109292	ENSSSAG00000078135	ENSSSAG00000078141	ENSSSAG00000078154	ENSSSAG00000121027	SEMA6A (ENSSSAG00000078215)	COMMD10 (ENSSSAG00000078252)	AP3S1 (ENSSSAG00000078268)	CDO1 (ENSSSAG00000006148)
River trout	MODERN SPECIES	39		ENSSTUG00000011299	ENSSTUG00000011316	ENSSTUG00000011349	ENSSTUG00000011361	snap29 (ENSSTUG00000011366)	ENSSTUG00000011395	serpind1 (ENSSTUG00000011400)	brd3b (ENSSTUG00000011419)	ENSSTUG00000011433	plpp7a (ENSSTUG00000011446)	ENSSTUG00000011504	ENSSTUG00000013400	PPIC (ENSSTUG00000013407)	ENSSTUG00000013434	SMAD4 (ENSSTUG00000013451) #22	ENSSTUG00000013519	ENSSTUG00000014212 #21	RASEF (ENSSTUG00000014934) #20	atxn2 (ENSSTUG00000015111)	SH2B3 (ENSSTUG00000015290)	ENSSTUG00000015298	prr16 (ENSSTUG00000015305)	ENSSTUG00000015311	sema6a (ENSSTUG00000015379)	COMMD10 (ENSSTUG00000015534)	AP3S1 (ENSSTUG00000015550)	cdo1 (ENSSTUG00000015603)	tmed7 (ENSSTUG00000015630) #24	fem1c (ENSSTUG00000015663) #25	pggt1b (ENSSTUG00000015673) #27
Oncorhynchus	ANCESTRAL SPECIES	58	ENSGT00940000158373.n #28	ENSGT00950000183128.A.b #27	ENSGT00940000158626.l #25	ENSGT00940000158463.d #24	ENSGT00390000018226.i	ENSGT00970000193421.C.a.oc	ENSGT00940000156565.s.b	ENSGT00940000158343.d.b	ENSGT00910000144204.a.b	ENSGT00940000166026.b	ENSGT00950000183191.b.c	ENSGT00940000156812.e	ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00940000178875	ENSGT00940000159786.a	ENSGT00950000182925.A.b	ENSGT00950000183125.b.a.a.a.a.b.d	ENSGT00940000157147.d
Oncorhynchus_a	ANCESTRAL SPECIES	61	ENSGT00940000158373.n #28	ENSGT00950000183128.A.b #27	ENSGT00940000158626.l #25	ENSGT00940000158463.d #24	ENSGT00390000018226.i	ENSGT00970000193421.C.a.oc	ENSGT00940000156565.s.b	ENSGT00940000158343.d.b	ENSGT00910000144204.a.b	ENSGT00940000166026.b	ENSGT00950000183191.b.c	ENSGT00940000156812.e	ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00530000064699	ENSGT00940000159244.a.d	ENSGT00940000159786.a	ENSGT00950000182925.A.b	ENSGT00950000183125.b.a.a.a.a.b.d	ENSGT00940000157147.d
Chinook salmon	MODERN SPECIES	3	CCSER1 (ENSOTSG00005039800) #29	trim36 (ENSOTSG00005039802) #28	pggt1b (ENSOTSG00005039806) #27	fem1c (ENSOTSG00005039807) #25	tmed7 (ENSOTSG00005039808) #24	cdo1 (ENSOTSG00005039811)	AP3S1 (ENSOTSG00005039813)	sema6a (ENSOTSG00005039834)	hsd17b4 (ENSOTSG00005040119)	prr16 (ENSOTSG00005040121)	SH2B3 (ENSOTSG00005040126)	atxn2 (ENSOTSG00005040129)	RASEF (ENSOTSG00005040132) #20	ENSOTSG00005040150 #21	mapkapk5 (ENSOTSG00005042038)	SMAD4 (ENSOTSG00005042083) #22	ENSOTSG00005042113	ENSOTSG00005042114	PPIC (ENSOTSG00005042115)	ENSOTSG00005042116	ENSOTSG00005042117	kif6 (ENSOTSG00005042119)	kcnk5a (ENSOTSG00005042122)	fam184aa (ENSOTSG00005042123)	SYT14 (ENSOTSG00005042125)	gnmt (ENSOTSG00005042126)	manea (ENSOTSG00005042127)	fut9a (ENSOTSG00005042128)	fhl5 (ENSOTSG00005042129)	col10a1a (ENSOTSG00005042130)	MAPK8IP1 (ENSOTSG00005042131)
Coho salmon	MODERN SPECIES	28	fem1c (ENSOKIG00005035272) #25	TMED7 (ENSOKIG00005035292) #24	cdo1 (ENSOKIG00005035373)	AP3S1 (ENSOKIG00005035418)	SEMA6A (ENSOKIG00005035496)	ENSOKIG00005035725	PRR16 (ENSOKIG00005035816)	ENSOKIG00005035823	SH2B3 (ENSOKIG00005035854)	atxn2 (ENSOKIG00005035911)	RASEF (ENSOKIG00005036936) #20	ENSOKIG00005037182	ENSOKIG00005037189	ENSOKIG00005037266 #21	MAPKAPK5 (ENSOKIG00005038172)	SMAD4 (ENSOKIG00005038755) #22	ENSOKIG00005038891	ENSOKIG00005038912	PPIC (ENSOKIG00005038940)	ENSOKIG00005038961	plpp7a (ENSOKIG00005038972)	MAPK8IP1 (ENSOKIG00005038986)	ENSOKIG00005039002	col10a1a (ENSOKIG00005039061)	fhl5 (ENSOKIG00005039069)	fut9a (ENSOKIG00005039106)	manea (ENSOKIG00005039113)	gnmt (ENSOKIG00005039118)	SYT14 (ENSOKIG00005039135)	fam184aa (ENSOKIG00005039157)	kcnk5a (ENSOKIG00005039185)
Rainbow trout	MODERN SPECIES	2	PGGT1B (ENSOMYG00000003252) #27	fem1c (ENSOMYG00000003240) #25	TMED7 (ENSOMYG00000003187) #24	AP3S1 (ENSOMYG00000046925)	ENSOMYG00000046915	ENSOMYG00000046643	ENSOMYG00000076041	ENSOMYG00000046474	ENSOMYG00000046466	ENSOMYG00000046455	ENSOMYG00000046396	ENSOMYG00000046379 #20	ENSOMYG00000045443 #21	ENSOMYG00000075476	ENSOMYG00000045241	ENSOMYG00000045206 #22	ENSOMYG00000045198	ENSOMYG00000045186	ENSOMYG00000045179	ENSOMYG00000045176	ENSOMYG00000045069	ENSOMYG00000049126	ENSOMYG00000070279	ENSOMYG00000045091	ENSOMYG00000045064	ENSOMYG00000050574	ENSOMYG00000045060	ENSOMYG00000048969	ENSOMYG00000044705	ENSOMYG00000044749	ENSOMYG00000021861
Northern pike	MODERN SPECIES	12	sema6a (ENSELUG00000019137)	DMXL1 (ENSELUG00000019280)	hsd17b4 (ENSELUG00000019400)	prr16 (ENSELUG00000000832)	ENSELUG00000019436	SH2B3 (ENSELUG00000026805)	atxn2 (ENSELUG00000019632)	ENSELUG00000019708	ENSELUG00000000871 #21	RASEF (ENSELUG00000019855) #20	FRMD3 (ENSELUG00000000878) #19	idnk (ENSELUG00000020041) #18	me2 (ENSELUG00000020081)	aptx (ENSELUG00000028256)	elac1 (ENSELUG00000020106)	SMAD4 (ENSELUG00000020159) #22	MEX3C (ENSELUG00000020179)	STPG2 (ENSELUG00000020348)	ENSELUG00000034665	UNC5C (ENSELUG00000020447)	ENSELUG00000029675	bmpr1ba (ENSELUG00000020490)	pdlim5a (ENSELUG00000020544)	opn4xb (ENSELUG00000001460)	EGFLAM (ENSELUG00000020787)	GDNF (ENSELUG00000020816)	ndc80 (ENSELUG00000000915)	nipbla (ENSELUG00000021054)	slc1a3a (ENSELUG00000021115)	lmbrd2a (ENSELUG00000021196)	UGT3A2 (ENSELUG00000021227)