Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00940000155181.c.a #7	ENSGT00390000016025.a #8	ENSGT00940000161055 #9	ENSGT00940000153434.c.a #10	ENSGT00390000002374 #11	ENSGT00940000157487 #12	ENSGT00940000169432 #13	ENSGT00390000008742 #14	ENSGT00940000156437 #15	ENSGT00390000003364 #16	ENSGT00940000158577 #17	ENSGT00940000172876 #18	ENSGT00940000173441 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #23	ENSGT00940000158626 #24	ENSGT00940000153988.B #25	ENSGT00950000183128.A #26	ENSGT00940000158373 #27	ENSGT00940000153912.B #28	ENSGT00530000064550.A #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l #34	ENSGT00950000183089.d #35	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00940000155181.c.a #7	ENSGT00390000016025.a #8	ENSGT00940000161055 #9	ENSGT00940000153434.c.a #10	ENSGT00390000002374 #11	ENSGT00940000157487 #12	ENSGT00940000169432 #13	ENSGT00390000008742 #14	ENSGT00940000156437 #15	ENSGT00390000003364 #16	ENSGT00940000158577 #17	ENSGT00940000172876 #18	ENSGT00940000173441 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #23	ENSGT00940000158626 #24	ENSGT00940000153988.B #25	ENSGT00950000183128.A #26	ENSGT00940000158373 #27	ENSGT00940000153912.B #28	ENSGT00530000064550.A #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d #35	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #7	ENSGT00390000016025.a #8	ENSGT00940000161055 #9	ENSGT00940000153434.c.a #10	ENSGT00390000002374 #11	ENSGT00940000157487 #12	ENSGT00940000169432 #13	ENSGT00390000008742 #14	ENSGT00940000156437 #15	ENSGT00390000003364 #16	ENSGT00940000158577 #17	ENSGT00940000172876 #18	ENSGT00940000173441 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #23	ENSGT00940000158626 #24	ENSGT00940000153988.B #25	ENSGT00950000183128.A #26	ENSGT00940000158373 #27	ENSGT00940000153912.B #28	ENSGT00530000064550.A #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d #35	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #7	ENSGT00390000016025.a #8	ENSGT00940000161055 #9	ENSGT00940000153434.c.a #10	ENSGT00390000002374 #11	ENSGT00940000157487 #12	ENSGT00940000169432 #13	ENSGT00390000008742 #14	ENSGT00940000156437 #15	ENSGT00390000003364 #16	ENSGT00940000158577 #17	ENSGT00940000172876 #18	ENSGT00940000173441 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #23	ENSGT00940000158626 #24	ENSGT00940000153988.B #25	ENSGT00950000183128.A #26	ENSGT00940000158373 #27	ENSGT00940000153912.B #28	ENSGT00530000064550.A #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d #35	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00940000157707	ENSGT00940000155181.c.a #7	ENSGT00390000016025.a #8	ENSGT00940000161055 #9	ENSGT00940000153434.c.a #10	ENSGT00390000002374 #11	ENSGT00940000157487 #12	ENSGT00390000008742 #14	ENSGT00940000156437 #15	ENSGT00390000003364 #16	ENSGT00940000158577 #17	ENSGT00940000172876 #18	ENSGT00940000173441 #19	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #23	ENSGT00940000158626 #24	ENSGT00940000167760	ENSGT00950000183128.A #26	ENSGT00940000158373 #27	ENSGT00940000153912.B #28	ENSGT01090000260066.a.b.l.a.a.a.b.b.b.b.a.a.b	ENSGT00530000064550.A #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d #35	ENSGT00940000164634 #36
Zebra mbuna	MODERN SPECIES	1094	ENSMZEG00005004526 #7	SLC28A3 (ENSMZEG00005004540) #8	ENSMZEG00005004573	rmi1 (ENSMZEG00005004595) #9	hnrnpk (ENSMZEG00005004611) #10	zgc:136564 (ENSMZEG00005004648) #11	KIF27 (ENSMZEG00005004665) #12	gkap1 (ENSMZEG00005004690) #14	UBQLN1 (ENSMZEG00005004709) #15	IDNK (ENSMZEG00005004724) #16	FRMD3 (ENSMZEG00005004753) #17	ENSMZEG00005004800 #17	ENSMZEG00005004807 #19	RASEF (ENSMZEG00005004819) #20	ENSMZEG00005004858 #21	SMAD4 (ENSMZEG00005004897) #22	ENSMZEG00005004908	tmed7 (ENSMZEG00005004914) #23	fem1c (ENSMZEG00005004920) #24	ENSMZEG00005004937	pggt1b (ENSMZEG00005004958) #26	trim36 (ENSMZEG00005004990) #27	CCSER1 (ENSMZEG00005005127) #28	ENSMZEG00005005141	ENSMZEG00005005149	ENSMZEG00005005154 #29	grid2 (ENSMZEG00005005165) #30	atoh1a (ENSMZEG00005005199) #31	smarcad1a (ENSMZEG00005005203) #32	prf1.5 (ENSMZEG00005005222) #33	mpeg1.2 (ENSMZEG00005005244) #34
Eastern happy	MODERN SPECIES	3	SLC28A3 (ENSACLG00000018317) #8	rmi1 (ENSACLG00000018298) #9	hnrnpk (ENSACLG00000018220) #10	ENSACLG00000018206	zgc:136564 (ENSACLG00000018161) #11	KIF27 (ENSACLG00000018127) #12	ENSACLG00000018107	gkap1 (ENSACLG00000018078) #14	ENSACLG00000018050 #15	IDNK (ENSACLG00000018021) #16	FRMD3 (ENSACLG00000017916) #17	ENSACLG00000017877 #18	ENSACLG00000017859 #19	RASEF (ENSACLG00000017818) #20	ENSACLG00000017708 #21	SMAD4 (ENSACLG00000017640) #22	ENSACLG00000017634	tmed7 (ENSACLG00000017622) #23	fem1c (ENSACLG00000017601) #24	ENSACLG00000017572	pggt1b (ENSACLG00000017539) #26	trim36 (ENSACLG00000017427) #27	CCSER1 (ENSACLG00000017382) #28	ENSACLG00000017363	ENSACLG00000017358 #29	ENSACLG00000017280	grid2 (ENSACLG00000017186) #30	atoh1a (ENSACLG00000017166) #31	smarcad1a (ENSACLG00000017063) #32	prf1.5 (ENSACLG00000017037) #33	MPEG1 (ENSACLG00000017016) ##34
P. nyererei	MODERN SPECIES	301	NTRK2 (ENSPNYG00000011160) #7	SLC28A3 (ENSPNYG00000010923) #8	rmi1 (ENSPNYG00000010885) #9	hnrnpk (ENSPNYG00000010838) #10	zgc:136564 (ENSPNYG00000010829) #11	ENSPNYG00000010817 #12	ENSPNYG00000010805 #13	gkap1 (ENSPNYG00000010792) #14	ENSPNYG00000010773 #15	IDNK (ENSPNYG00000010763) #16	FRMD3 (ENSPNYG00000010715) #17	ENSPNYG00000010694 #17	ENSPNYG00000010680 #19	RASEF (ENSPNYG00000010579) #20	ENSPNYG00000010511 #21	SMAD4 (ENSPNYG00000010448) #22	ENSPNYG00000010418	tmed7 (ENSPNYG00000010405) #23	fem1c (ENSPNYG00000010383) #24	ENSPNYG00000010350 #25	pggt1b (ENSPNYG00000010326) #26	trim36 (ENSPNYG00000010292) #27	CCSER1 (ENSPNYG00000010248) #28	ENSPNYG00000010224 #29	grid2 (ENSPNYG00000010183) #30	atoh1a (ENSPNYG00000010136) #31	smarcad1a (ENSPNYG00000010087) #32	prf1.5 (ENSPNYG00000010054) #33	MPEG1 (ENSPNYG00000010040) #34	si:ch211-103n10.5 (ENSPNYG00000009985) #35	tspan36 (ENSPNYG00000009942) #36
Burton s mouthbrooder	MODERN SPECIES	283	naa35 (ENSHBUG00000010050)	agtpbp1 (ENSHBUG00000010183)	NTRK2 (ENSHBUG00000010215) #7	SLC28A3 (ENSHBUG00000010235) #8	rmi1 (ENSHBUG00000010243) #9	hnrnpk (ENSHBUG00000010255) #10	ENSHBUG00000010266 #12	zgc:136564 (ENSHBUG00000010269) #11	ENSHBUG00000010278	gkap1 (ENSHBUG00000010291) #14	ENSHBUG00000010312 #15	IDNK (ENSHBUG00000000270) #16	FRMD3 (ENSHBUG00000010332) #17	RASEF (ENSHBUG00000010345) #20	ENSHBUG00000010435 #21	SMAD4 (ENSHBUG00000010531) #22	ENSHBUG00000010552	tmed7 (ENSHBUG00000010564) #23	fem1c (ENSHBUG00000010591) #24	ENSHBUG00000010602 #25	pggt1b (ENSHBUG00000010629) #26	trim36 (ENSHBUG00000010912) #27	CCSER1 (ENSHBUG00000010939) #28	grid2 (ENSHBUG00000011010) #30	atoh1a (ENSHBUG00000011023) #31	smarcad1a (ENSHBUG00000011042) #32	prf1.5 (ENSHBUG00000011065) #33	mpeg1.2 (ENSHBUG00000011073) ##34	si:ch211-103n10.5 (ENSHBUG00000011078) #35	tspan36 (ENSHBUG00000011085) #36	mapk4 (ENSHBUG00000011131) #37
Lyretail cichlid	MODERN SPECIES	306	agtpbp1 (ENSNBRG00000011767)	NTRK2 (ENSNBRG00000011797) #7	ENSNBRG00000011822	SLC28A3 (ENSNBRG00000011891) #8	rmi1 (ENSNBRG00000012155) #9	hnrnpk (ENSNBRG00000012167) #10	zgc:136564 (ENSNBRG00000012207) #11	ENSNBRG00000012221 #12	gkap1 (ENSNBRG00000012231) #14	ENSNBRG00000012246 #15	ENSNBRG00000012262 #16	FRMD3 (ENSNBRG00000012272) #17	ENSNBRG00000012321 #19	RASEF (ENSNBRG00000012335) #20	ENSNBRG00000012385 #21	SMAD4 (ENSNBRG00000012448) #22	ENSNBRG00000012485	tmed7 (ENSNBRG00000012507) #23	fem1c (ENSNBRG00000012522) #24	ENSNBRG00000012540 #25	pggt1b (ENSNBRG00000012580) #26	trim36 (ENSNBRG00000012611) #27	CCSER1 (ENSNBRG00000012650) #28	ENSNBRG00000012686	ENSNBRG00000012698 #29	grid2 (ENSNBRG00000012712) #30	atoh1a (ENSNBRG00000012739) #31	smarcad1a (ENSNBRG00000012749) #32	prf1.5 (ENSNBRG00000012779) #33	MPEG1 (ENSNBRG00000012811) ##34	MPEG1 (ENSNBRG00000012820) #34
Nile tilapia	MODERN SPECIES	3	ENSONIG00000038512	SLC28A3 (ENSONIG00000014999) #8	rmi1 (ENSONIG00000015001) #9	hnrnpk (ENSONIG00000015002) #10	zgc:136564 (ENSONIG00000015007) #11	KIF27 (ENSONIG00000015008) #12	ENSONIG00000042634	gkap1 (ENSONIG00000015010) #14	ENSONIG00000029651 #15	ENSONIG00000043191 #15	IDNK (ENSONIG00000029581) #16	FRMD3 (ENSONIG00000015018) #17	ENSONIG00000036497 #18	RASEF (ENSONIG00000015021) #20	ENSONIG00000015027 #21	SMAD4 (ENSONIG00000041783) #22	ENSONIG00000037742	tmed7 (ENSONIG00000015039) #23	fem1c (ENSONIG00000015041) #24	ENSONIG00000015042	pggt1b (ENSONIG00000042191) #26	trim36 (ENSONIG00000015049) #27	CCSER1 (ENSONIG00000015052) #28	grid2 (ENSONIG00000015054) #30	atoh1a (ENSONIG00000015058) #31	smarcad1a (ENSONIG00000015059) #32	prf1.5 (ENSONIG00000041518) #33	mpeg1.2 (ENSONIG00000042060) #34	si:ch211-103n10.5 (ENSONIG00000034485) #35	tspan36 (ENSONIG00000042291) #36	mapk4 (ENSONIG00000015070) #37