Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	4	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT01030000235745	ENSGT00910000144252.d.a #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c	ENSGT00940000155464.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	115	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p
Acanthomorphata	ANCESTRAL SPECIES	13															ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Perciformes	ANCESTRAL SPECIES	6	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Lumpfish	MODERN SPECIES	24	agtpbp1 (ENSCLMG00005002568) #7	NTRK2 (ENSCLMG00005002562) #8	SLC28A3 (ENSCLMG00005002559) #9	rmi1 (ENSCLMG00005002558) #10	hnrnpk (ENSCLMG00005002554) #11	zgc:136564 (ENSCLMG00005002549) #12	ENSCLMG00005002548 #13	ENSCLMG00005002547 #14	gkap1 (ENSCLMG00005002546) #15	ENSCLMG00005002545 #16	IDNK (ENSCLMG00005002544) #17	FRMD3 (ENSCLMG00005002542) #18	ENSCLMG00005002541 #19	RASEF (ENSCLMG00005002540) #20	ENSCLMG00005002485 #21	SMAD4 (ENSCLMG00005002475) #22	ENSCLMG00005002470 #23	tmed7 (ENSCLMG00005002466) #24	fem1c (ENSCLMG00005002464) #25	CCDC112 (ENSCLMG00005002461) #26	pggt1b (ENSCLMG00005002334) #27	trim36 (ENSCLMG00005002329) #28	CCSER1 (ENSCLMG00005002328) #29	grid2 (ENSCLMG00005002318) #30	atoh1a (ENSCLMG00005002307) #31	smarcad1a (ENSCLMG00005001923) #32	prf1.5 (ENSCLMG00005001901) #33	mpeg1.2 (ENSCLMG00005001899) #34	ENSCLMG00005001897 #35	tspan36 (ENSCLMG00005001892) #36	mapk4 (ENSCLMG00005001823) #37
Stickleback	MODERN SPECIES	12	lmbrd2a (ENSGACG00000007686)	GOLM1 (ENSGACG00000007679)	naa35 (ENSGACG00000007653)	agtpbp1 (ENSGACG00000007638) #7	ENSGACG00000007634	NTRK2 (ENSGACG00000007625) #8	rmi1 (ENSGACG00000007616) #10	hnrnpk (ENSGACG00000007581) #11	zgc:136564 (ENSGACG00000007576) #12	KIF27 (ENSGACG00000007564) #13	gkap1 (ENSGACG00000007551) #15	ENSGACG00000007544	FRMD3 (ENSGACG00000007535) #18	RASEF (ENSGACG00000007528) #20	ENSGACG00000007510 #21	SMAD4 (ENSGACG00000007495) #22	ENSGACG00000007490 #23	tmed7 (ENSGACG00000007420) #24	fem1c (ENSGACG00000007406) #25	ENSGACG00000007399 #26	pggt1b (ENSGACG00000007394) #27	trim36 (ENSGACG00000007382) #28	CCSER1 (ENSGACG00000007377) #29	ENSGACG00000007375	grid2 (ENSGACG00000007345) #30	atoh1a (ENSGACG00000007342) #31	ENSGACG00000007338	smarcad1a (ENSGACG00000007327) #32	prf1.5 (ENSGACG00000007321) #33	mpeg1.2 (ENSGACG00000007315) #34	si:ch211-103n10.5 (ENSGACG00000007312)
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b
Pike perch	MODERN SPECIES	23	agtpbp1 (ENSSLUG00000017113) #7	NTRK2 (ENSSLUG00000005234) #8	SLC28A3 (ENSSLUG00000005308) #9	rmi1 (ENSSLUG00000005327) #10	hnrnpk (ENSSLUG00000005395) #11	zgc:136564 (ENSSLUG00000005467) #12	ENSSLUG00000005473 #13	ENSSLUG00000005479 #13	gkap1 (ENSSLUG00000005502) #15	ENSSLUG00000005515 #16	IDNK (ENSSLUG00000005521) #17	ENSSLUG00000005529 #18	ENSSLUG00000005540 #18	RASEF (ENSSLUG00000005565) #20	ENSSLUG00000005691 #21	SMAD4 (ENSSLUG00000007682) #22	ENSSLUG00000007725 #23	tmed7 (ENSSLUG00000007732) #24	fem1c (ENSSLUG00000007752) #25	ENSSLUG00000007765	pggt1b (ENSSLUG00000007780) #27	trim36 (ENSSLUG00000007809) #28	CCSER1 (ENSSLUG00000007867) #29	grid2 (ENSSLUG00000007893) #30	ENSSLUG00000007950	atoh1a (ENSSLUG00000007954) #31	smarcad1a (ENSSLUG00000007968) #32	prf1.5 (ENSSLUG00000008271) #33	mpeg1.2 (ENSSLUG00000008277) #34	si:ch211-103n10.5 (ENSSLUG00000008278)	tspan36 (ENSSLUG00000008283) #36
Channel bull blenny	MODERN SPECIES	23	naa35 (ENSCGOG00000006460)	agtpbp1 (ENSCGOG00000006909) #7	NTRK2 (ENSCGOG00000007505) #8	SLC28A3 (ENSCGOG00000008082) #9	rmi1 (ENSCGOG00000008102) #10	hnrnpk (ENSCGOG00000008108) #11	zgc:136564 (ENSCGOG00000008131) #12	ENSCGOG00000008135 #13	ENSCGOG00000008139 #14	gkap1 (ENSCGOG00000008142) #15	ENSCGOG00000008145 #16	IDNK (ENSCGOG00000008149) #17	FRMD3 (ENSCGOG00000008153) #18	RASEF (ENSCGOG00000008186) #20	ENSCGOG00000008348 #21	SMAD4 (ENSCGOG00000013431) #22	ENSCGOG00000013476 #23	tmed7 (ENSCGOG00000013479) #24	fem1c (ENSCGOG00000013496) #25	ENSCGOG00000013497 #26	pggt1b (ENSCGOG00000013512) #27	trim36 (ENSCGOG00000013769) #28	CCSER1 (ENSCGOG00000013972) #29	grid2 (ENSCGOG00000013975) #30	atoh1a (ENSCGOG00000014076) #31	smarcad1a (ENSCGOG00000014079) #32	prf1.5 (ENSCGOG00000014245) #33	mpeg1.2 (ENSCGOG00000014256) #34	si:ch211-103n10.5 (ENSCGOG00000014258)	tspan36 (ENSCGOG00000014262) #36	mapk4 (ENSCGOG00000014278) #37
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Gilthead seabream	MODERN SPECIES	19	naa35 (ENSSAUG00010010550)	agtpbp1 (ENSSAUG00010009347) #7	NTRK2 (ENSSAUG00010009211) #8	SLC28A3 (ENSSAUG00010009173) #9	rmi1 (ENSSAUG00010009168) #10	hnrnpk (ENSSAUG00010009140) #11	zgc:136564 (ENSSAUG00010009131) #12	ENSSAUG00010009130	gkap1 (ENSSAUG00010009126) #15	ENSSAUG00010009122 #16	IDNK (ENSSAUG00010009119) #17	FRMD3 (ENSSAUG00010008144) #18	ENSSAUG00010008137	RASEF (ENSSAUG00010008132) #20	ENSSAUG00010006914 #21	SMAD4 (ENSSAUG00010006877) #22	ENSSAUG00010006874 #23	tmed7 (ENSSAUG00010006845) #24	fem1c (ENSSAUG00010006841) #25	CCDC112 (ENSSAUG00010006807) #26	trim36 (ENSSAUG00010006764) #28	CCSER1 (ENSSAUG00010006757) #29	grid2 (ENSSAUG00010005565) #30	atoh1a (ENSSAUG00010005548) #31	smarcad1a (ENSSAUG00010005507) #32	mpeg1.2 (ENSSAUG00010005496) #34	si:ch211-103n10.5 (ENSSAUG00010005492)	tspan36 (ENSSAUG00010005487) #36	mapk4 (ENSSAUG00010005482) #37	me2 (ENSSAUG00010005189)	elac1 (ENSSAUG00010005166)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
European seabass	MODERN SPECIES	13	naa35 (ENSDLAG00005017812)	agtpbp1 (ENSDLAG00005017854) #7	NTRK2 (ENSDLAG00005029105) #8	SLC28A3 (ENSDLAG00005018754) #9	rmi1 (ENSDLAG00005033874) #10	hnrnpk (ENSDLAG00005031182) #11	zgc:136564 (ENSDLAG00005018800) #12	ENSDLAG00005018809 #13	ENSDLAG00005018812	gkap1 (ENSDLAG00005028817) #15	IDNK (ENSDLAG00005033278) #17	FRMD3 (ENSDLAG00005018857) #18	ENSDLAG00005026471	RASEF (ENSDLAG00005018997) #20	ENSDLAG00005019047 #21	ENSDLAG00005020688 #22	ENSDLAG00005027349 #23	fem1c (ENSDLAG00005030443) #25	ENSDLAG00005020736	ENSDLAG00005029293 #27	trim36 (ENSDLAG00005020766) #28	CCSER1 (ENSDLAG00005020832) #29	grid2 (ENSDLAG00005020850) #30	atoh1a (ENSDLAG00005021057) #31	smarcad1a (ENSDLAG00005021071) #32	prf1.5 (ENSDLAG00005021492) #33	mpeg1.3 (ENSDLAG00005021495) #34	si:ch211-103n10.5 (ENSDLAG00005021497)	tspan36 (ENSDLAG00005021500) #36	mapk4 (ENSDLAG00005034120) #37	ENSDLAG00005026681
Large yellow croaker	MODERN SPECIES	2	agtpbp1 (ENSLCRG00005011261) #7	NTRK2 (ENSLCRG00005012194) #8	SLC28A3 (ENSLCRG00005012195) #9	rmi1 (ENSLCRG00005012199) #10	hnrnpk (ENSLCRG00005012203) #11	zgc:136564 (ENSLCRG00005012204) #12	KIF27 (ENSLCRG00005012206) #13	ENSLCRG00005012207	gkap1 (ENSLCRG00005012208) #15	UBQLN1 (ENSLCRG00005012209) #16	IDNK (ENSLCRG00005012210) #17	FRMD3 (ENSLCRG00005012212) #18	RASEF (ENSLCRG00005012215) #20	ENSLCRG00005012217	ENSLCRG00005012241 #21	SMAD4 (ENSLCRG00005013595) #22	ENSLCRG00005013642 #23	tmed7 (ENSLCRG00005013643) #24	fem1c (ENSLCRG00005013644) #25	ENSLCRG00005013645	pggt1b (ENSLCRG00005013646) #27	trim36 (ENSLCRG00005013648) #28	CCSER1 (ENSLCRG00005013935) #29	grid2 (ENSLCRG00005013936) #30	atoh1a (ENSLCRG00005014125) #31	smarcad1a (ENSLCRG00005014128) #32	prf1.5 (ENSLCRG00005014736) #33	mpeg1.2 (ENSLCRG00005014737) #34	ENSLCRG00005014738	tspan36 (ENSLCRG00005014740) #36	mapk4 (ENSLCRG00005014741) #37
Ballan wrasse	MODERN SPECIES	199															ENSLBEG00000007412 #21	SMAD4 (ENSLBEG00000007538) #22	ENSLBEG00000007607 #23	tmed7 (ENSLBEG00000007625) #24	fem1c (ENSLBEG00000007646) #25	CCDC112 (ENSLBEG00000007689) #26	pggt1b (ENSLBEG00000007759) #27	trim36 (ENSLBEG00000007864) #28	CCSER1 (ENSLBEG00000007928) #29	ENSLBEG00000007966	grid2 (ENSLBEG00000007991) #30	atoh1a (ENSLBEG00000008050) #31	smarcad1a (ENSLBEG00000008088) #32	prf1.5 (ENSLBEG00000008154) #33	MPEG1 (ENSLBEG00000008183) #34	MPEG1 (ENSLBEG00000008207) #34
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00390000018651.b	ENSGT00530000063675.b	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Fugu	MODERN SPECIES	13	naa35 (ENSTRUG00000008637)	agtpbp1 (ENSTRUG00000009063) #7	NTRK2 (ENSTRUG00000009674) #8	SLC28A3 (ENSTRUG00000010280) #9	rmi1 (ENSTRUG00000010577) #10	hnrnpk (ENSTRUG00000010659) #11	zgc:136564 (ENSTRUG00000021195) #12	ENSTRUG00000031226	ENSTRUG00000023266	gkap1 (ENSTRUG00000011213) #15	IDNK (ENSTRUG00000029238) #17	ENSTRUG00000027897	FRMD3 (ENSTRUG00000011338) #18	RASEF (ENSTRUG00000011541) #20	ENSTRUG00000011681 #21	SMAD4 (ENSTRUG00000011769) #22	ENSTRUG00000011888 #23	tmed7 (ENSTRUG00000019910) #24	fem1c (ENSTRUG00000023731) #25	CCDC112 (ENSTRUG00000027710) #26	pggt1b (ENSTRUG00000012182) #27	trim36 (ENSTRUG00000012235) #28	CCSER1 (ENSTRUG00000012411) #29	grid2 (ENSTRUG00000012431) #30	atoh1a (ENSTRUG00000029412) #31	smarcad1a (ENSTRUG00000025900) #32	prf1.5 (ENSTRUG00000012796) #33	mpeg1.2 (ENSTRUG00000012860) #34	ENSTRUG00000021253	tspan36 (ENSTRUG00000012904) #36	mapk4 (ENSTRUG00000012974) #37
Tetraodon	MODERN SPECIES	3	LMBRD2 (ENSTNIG00000015795)	naa35 (ENSTNIG00000015794)	agtpbp1 (ENSTNIG00000015793) #7	NTRK2 (ENSTNIG00000015792) #8	SLC28A3 (ENSTNIG00000006003) #9	rmi1 (ENSTNIG00000006004) #10	hnrnpk (ENSTNIG00000006005) #11	zgc:136564 (ENSTNIG00000001428) #12	ENSTNIG00000006006	gkap1 (ENSTNIG00000006007) #15	IDNK (ENSTNIG00000006008) #17	FRMD3 (ENSTNIG00000006009) #18	RASEF (ENSTNIG00000006010) #20	ENSTNIG00000002192 #21	ENSTNIG00000002574 #21	SMAD4 (ENSTNIG00000003193) #22	tmed7 (ENSTNIG00000003194) #24	fem1c (ENSTNIG00000003195) #25	CCDC112 (ENSTNIG00000003196) #26	pggt1b (ENSTNIG00000003197) #27	trim36 (ENSTNIG00000003198) #28	CCSER1 (ENSTNIG00000003199) #29	grid2 (ENSTNIG00000017583) #30	atoh1a (ENSTNIG00000017584) #31	smarcad1a (ENSTNIG00000017585) #32	prf1.5 (ENSTNIG00000017586) #33	mpeg1.2 (ENSTNIG00000017587) #34	tspan36 (ENSTNIG00000017588) #36	mapk4 (ENSTNIG00000017589) #37	me2 (ENSTNIG00000017590)	elac1 (ENSTNIG00000017591)
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432.b	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Carangaria	ANCESTRAL SPECIES	9	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487.t #13	ENSGT00940000169432.b	ENSGT00940000157487.s #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487.t #13	ENSGT00940000169432.b	ENSGT00940000157487.s #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Seriola	ANCESTRAL SPECIES	35	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.d.b.a.a	ENSGT00940000157487.s #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Greater amberjack	MODERN SPECIES	98	SLC28A3 (ENSSDUG00000022144) #9	rmi1 (ENSSDUG00000022159) #10	hnrnpk (ENSSDUG00000022165) #11	ENSSDUG00000022176	zgc:136564 (ENSSDUG00000022179) #12	ENSSDUG00000022185	KIF27 (ENSSDUG00000022190) #13	gkap1 (ENSSDUG00000022199) #15	UBQLN1 (ENSSDUG00000022203) #16	ENSSDUG00000022206 #17	FRMD3 (ENSSDUG00000022212) #18	ENSSDUG00000022222 #18	ENSSDUG00000022225	RASEF (ENSSDUG00000022228) #20	ENSSDUG00000022233 #21	SMAD4 (ENSSDUG00000022248) #22	ENSSDUG00000022255 #23	tmed7 (ENSSDUG00000022263) #24	fem1c (ENSSDUG00000022265) #25	tmed7 (ENSSDUG00000022269) #24	CCDC112 (ENSSDUG00000022281) #26	pggt1b (ENSSDUG00000022293) #27	trim36 (ENSSDUG00000022305) #28	CCSER1 (ENSSDUG00000022318) #29	ENSSDUG00000022322	grid2 (ENSSDUG00000022325) #30	atoh1a (ENSSDUG00000022334) #31	smarcad1a (ENSSDUG00000022338) #32	prf1.5 (ENSSDUG00000022351) #33	mpeg1.2 (ENSSDUG00000022363) #34	si:ch211-103n10.5 (ENSSDUG00000022366)
Yellowtail amberjack	MODERN SPECIES	3242	gstt1a (ENSSLDG00000024728)	MMP11 (ENSSLDG00000024735)	derl3 (ENSSLDG00000024745)	SMARCB1 (ENSSLDG00000024753)	ralgds (ENSSLDG00000024773)	ptgesl (ENSSLDG00000024794)	gle1 (ENSSLDG00000024801)	ENSSLDG00000024808	si:ch211-51h9.7 (ENSSLDG00000024814)	SET (ENSSLDG00000024820)	ENSSLDG00000024829	zdhhc12a (ENSSLDG00000024843)	slc25a25a (ENSSLDG00000024848)	EEIG1 (ENSSLDG00000024859)	ENSSLDG00000024880 #21	SMAD4 (ENSSLDG00000024901) #22	ENSSLDG00000024917 #23	tmed7 (ENSSLDG00000024920) #24	fem1c (ENSSLDG00000024922) #25	CCDC112 (ENSSLDG00000024928) #26	pggt1b (ENSSLDG00000024935) #27	trim36 (ENSSLDG00000024945) #28	CCSER1 (ENSSLDG00000024954) #29	grid2 (ENSSLDG00000024958) #30	ENSSLDG00000024976	atoh1a (ENSSLDG00000024982) #31	smarcad1a (ENSSLDG00000024986) #32	prf1.5 (ENSSLDG00000024998) #33	mpeg1.2 (ENSSLDG00000025001) #34	si:ch211-103n10.5 (ENSSLDG00000025005)	tspan36 (ENSSLDG00000025011) #36
Barramundi perch	MODERN SPECIES	95	SLC28A3 (ENSLCAG00010028331) #9	rmi1 (ENSLCAG00010028332) #10	hnrnpk (ENSLCAG00010028333) #11	zgc:136564 (ENSLCAG00010028334) #12	ENSLCAG00010028335 #13	ENSLCAG00010000207	ENSLCAG00010000220 #13	gkap1 (ENSLCAG00010000243) #15	ENSLCAG00010000262	ENSLCAG00010000271 #16	IDNK (ENSLCAG00010000288) #17	FRMD3 (ENSLCAG00010000347) #18	ENSLCAG00010000406	RASEF (ENSLCAG00010000419) #20	ENSLCAG00010000663 #21	SMAD4 (ENSLCAG00010000908) #22	ENSLCAG00010000930 #23	tmed7 (ENSLCAG00010000934) #24	fem1c (ENSLCAG00010000938) #25	CCDC112 (ENSLCAG00010000942) #26	pggt1b (ENSLCAG00010000949) #27	trim36 (ENSLCAG00010000961) #28	CCSER1 (ENSLCAG00010000970) #29	grid2 (ENSLCAG00010000999) #30	atoh1a (ENSLCAG00010001044) #31	smarcad1a (ENSLCAG00010001088) #32	prf1.5 (ENSLCAG00010001282) #33	mpeg1.2 (ENSLCAG00010001284) #34	si:ch211-103n10.5 (ENSLCAG00010001288)	tspan36 (ENSLCAG00010001294) #36	mapk4 (ENSLCAG00010001302) #37
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000169432.b	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Turbot	MODERN SPECIES	21	ENSSMAG00000019221	naa35 (ENSSMAG00000019239)	agtpbp1 (ENSSMAG00000019334) #7	NTRK2 (ENSSMAG00000019401) #8	SLC28A3 (ENSSMAG00000019418) #9	rmi1 (ENSSMAG00000019443) #10	hnrnpk (ENSSMAG00000019461) #11	zgc:136564 (ENSSMAG00000019492) #12	gkap1 (ENSSMAG00000000816) #15	ENSSMAG00000000826 #16	IDNK (ENSSMAG00000000863) #17	FRMD3 (ENSSMAG00000000874) #18	ENSSMAG00000000898	RASEF (ENSSMAG00000000942) #20	ENSSMAG00000000964 #21	ENSSMAG00000001029 #22	ENSSMAG00000001075 #23	TMED7 (ENSSMAG00000001106) #24	ENSSMAG00000001129 #25	ENSSMAG00000001161	TRIM36 (ENSSMAG00000001201) #28	CCSER1 (ENSSMAG00000001219) #29	grid2 (ENSSMAG00000001237) #30	atoh1a (ENSSMAG00000001293) #31	smarcad1a (ENSSMAG00000001326) #32	prf1.5 (ENSSMAG00000028860) #33	mpeg1.3 (ENSSMAG00000001357) #34	si:ch211-103n10.5 (ENSSMAG00000030927)	tspan36 (ENSSMAG00000001361) #36	mapk4 (ENSSMAG00000001375) #37	ENSSMAG00000001399
Tongue sole	MODERN SPECIES	398	CCNO (ENSCSEG00000007047)	ENSCSEG00000007042	gpx8 (ENSCSEG00000007032)	CDC20B (ENSCSEG00000007020)	ENSCSEG00000007013	ENSCSEG00000007008	ENSCSEG00000006994	pmpca (ENSCSEG00000006950)	inpp5e (ENSCSEG00000006938)	ENSCSEG00000006928	notch1b (ENSCSEG00000006898)	ubac1 (ENSCSEG00000006892)	ENSCSEG00000006890	ENSCSEG00000006885	ENSCSEG00000006838 #21	SMAD4 (ENSCSEG00000006818) #22	ENSCSEG00000006809 #23	tmed7 (ENSCSEG00000006788) #24	fem1c (ENSCSEG00000006770) #25	ENSCSEG00000006753	pggt1b (ENSCSEG00000006738) #27	trim36 (ENSCSEG00000006535) #28	ENSCSEG00000006508 #29	KCNT1 (ENSCSEG00000006453)	ENSCSEG00000006442	ENSCSEG00000006435	ENSCSEG00000006430	zgc:101858 (ENSCSEG00000006409)	LRRC8A (ENSCSEG00000006406)	hscb (ENSCSEG00000006402)	rtn4r (ENSCSEG00000006397)
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00940000169432.b	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b
Zig-zag eel	MODERN SPECIES	23	NTRK2 (ENSMAMG00000001925) #8	SLC28A3 (ENSMAMG00000001879) #9	rmi1 (ENSMAMG00000001809) #10	hnrnpk (ENSMAMG00000001787) #11	zgc:136564 (ENSMAMG00000025686) #12	ENSMAMG00000001772 #13	ENSMAMG00000028653	gkap1 (ENSMAMG00000001670) #15	ENSMAMG00000001630 #16	IDNK (ENSMAMG00000024372) #17	FRMD3 (ENSMAMG00000001600) #18	ENSMAMG00000001583	ENSMAMG00000024780	RASEF (ENSMAMG00000001536) #20	ENSMAMG00000001458 #21	ENSMAMG00000001386 #22	ENSMAMG00000001370 #23	TMED7 (ENSMAMG00000001344) #24	FEM1C (ENSMAMG00000001315) #25	CCDC112 (ENSMAMG00000001250) #26	TRIM36 (ENSMAMG00000001138) #28	CCSER1 (ENSMAMG00000001072) #29	ENSMAMG00000024935	grid2 (ENSMAMG00000000999) #30	atoh1a (ENSMAMG00000000960) #31	smarcad1a (ENSMAMG00000000933) #32	prf1.5 (ENSMAMG00000026104) #33	mpeg1.3 (ENSMAMG00000000887) #34	si:ch211-103n10.5 (ENSMAMG00000000824)	tspan36 (ENSMAMG00000000801) #36	mapk4 (ENSMAMG00000000736) #37
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b
Climbing perch	MODERN SPECIES	22	ENSATEG00000029703	naa35 (ENSATEG00000014524)	agtpbp1 (ENSATEG00000014559) #7	NTRK2 (ENSATEG00000014637) #8	SLC28A3 (ENSATEG00000014661) #9	rmi1 (ENSATEG00000014694) #10	hnrnpk (ENSATEG00000014700) #11	zgc:136564 (ENSATEG00000014747) #12	ENSATEG00000014795 #13	gkap1 (ENSATEG00000014842) #15	UBQLN1 (ENSATEG00000014854) #16	IDNK (ENSATEG00000029086) #17	FRMD3 (ENSATEG00000014942) #18	RASEF (ENSATEG00000015032) #20	ENSATEG00000015060 #21	ENSATEG00000015137 #22	ENSATEG00000015187 #23	TMED7 (ENSATEG00000025319) #24	fem1c (ENSATEG00000015228) #25	PGGT1B (ENSATEG00000015408) #27	trim36 (ENSATEG00000029984) #28	ENSATEG00000027587 #29	CCSER1 (ENSATEG00000015381) #29	ENSATEG00000025952 #28	grid2 (ENSATEG00000015516) #30	atoh1a (ENSATEG00000015582) #31	smarcad1a (ENSATEG00000015608) #32	prf1.5 (ENSATEG00000028939) #33	mpeg1.3 (ENSATEG00000015677) #34	tspan36 (ENSATEG00000015690) #36	si:ch211-103n10.5 (ENSATEG00000015719)
Siamese fighting fish	MODERN SPECIES	20	ENSBSLG00000002595	naa35 (ENSBSLG00000002626)	agtpbp1 (ENSBSLG00000002867) #7	NTRK2 (ENSBSLG00000003726) #8	rmi1 (ENSBSLG00000003826) #10	hnrnpk (ENSBSLG00000003905) #11	zgc:136564 (ENSBSLG00000004010) #12	KIF27 (ENSBSLG00000004037) #13	ENSBSLG00000004078 #14	gkap1 (ENSBSLG00000004088) #15	UBQLN1 (ENSBSLG00000004127) #16	IDNK (ENSBSLG00000004154) #17	FRMD3 (ENSBSLG00000004220) #18	RASEF (ENSBSLG00000004807) #20	ENSBSLG00000005209 #21	SMAD4 (ENSBSLG00000006078) #22	ENSBSLG00000006087 #23	tmed7 (ENSBSLG00000006091) #24	fem1c (ENSBSLG00000006092) #25	ENSBSLG00000006308 #26	pggt1b (ENSBSLG00000006426) #27	trim36 (ENSBSLG00000006686) #28	CCSER1 (ENSBSLG00000006910) #29	grid2 (ENSBSLG00000006957) #30	atoh1a (ENSBSLG00000007250) #31	smarcad1a (ENSBSLG00000007262) #32	prf1.5 (ENSBSLG00000007424) #33	mpeg1.2 (ENSBSLG00000007426) #34	si:ch211-103n10.5 (ENSBSLG00000007434)	tspan36 (ENSBSLG00000007719) #36	mapk4 (ENSBSLG00000007750) #37
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000167699	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32
Pomacentridae	ANCESTRAL SPECIES		ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00990000204450
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Amphiprion	ANCESTRAL SPECIES	10	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b
Orange clownfish	MODERN SPECIES	19	agtpbp1 (ENSAPEG00000003001) #7	NTRK2 (ENSAPEG00000003079) #8	SLC28A3 (ENSAPEG00000003122) #9	rmi1 (ENSAPEG00000003178) #10	hnrnpk (ENSAPEG00000003191) #11	zgc:136564 (ENSAPEG00000003210) #12	ENSAPEG00000003234 #13	ENSAPEG00000003264	gkap1 (ENSAPEG00000003303) #15	ENSAPEG00000003383 #16	IDNK (ENSAPEG00000003410) #17	FRMD3 (ENSAPEG00000003415) #18	ENSAPEG00000003455	RASEF (ENSAPEG00000003461) #20	ENSAPEG00000003485 #21	SMAD4 (ENSAPEG00000003568) #22	ENSAPEG00000003579 #23	tmed7 (ENSAPEG00000003594) #24	fem1c (ENSAPEG00000003603) #25	ENSAPEG00000003631	pggt1b (ENSAPEG00000003651) #27	trim36 (ENSAPEG00000003693) #28	CCSER1 (ENSAPEG00000003762) #29	grid2 (ENSAPEG00000003795) #30	atoh1a (ENSAPEG00000003865) #31	smarcad1a (ENSAPEG00000003889) #32	prf1.5 (ENSAPEG00000003927) #33	mpeg1.2 (ENSAPEG00000003943) #34	tspan36 (ENSAPEG00000003952) #36	si:ch211-103n10.5 (ENSAPEG00000003963)	mapk4 (ENSAPEG00000003989) #37
Clown anemonefish	MODERN SPECIES	361															ENSAOCG00000021439 #21	SMAD4 (ENSAOCG00000021361) #22	ENSAOCG00000021347 #23
Spiny chromis	MODERN SPECIES	274											IDNK (ENSAPOG00000024406) #17	FRMD3 (ENSAPOG00000024401) #18	ENSAPOG00000024389	RASEF (ENSAPOG00000024369) #20	ENSAPOG00000024295 #21	SMAD4 (ENSAPOG00000024254) #22	ENSAPOG00000024248 #23	tmed7 (ENSAPOG00000024242) #24	fem1c (ENSAPOG00000024235) #25	ENSAPOG00000024217	pggt1b (ENSAPOG00000024184) #27	trim36 (ENSAPOG00000024145) #28	ENSAPOG00000024080 #29
Bicolor damselfish	MODERN SPECIES	684													FRMD3 (ENSSPAG00000002387) #18	RASEF (ENSSPAG00000002442) #20	ENSSPAG00000002458 #21	SMAD4 (ENSSPAG00000002526) #22	ENSSPAG00000002581 #23	tmed7 (ENSSPAG00000002592) #24	fem1c (ENSSPAG00000002608) #25	ENSSPAG00000002639	pggt1b (ENSSPAG00000002667) #27	trim36 (ENSSPAG00000002708) #28	ENSSPAG00000002738 #29
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000172876	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT01090000260066.a.b.l.a.a.a.b.b.b.b.a.a.b	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.l.b #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Zebra mbuna	MODERN SPECIES	1094	ENSMZEG00005004526 #8	SLC28A3 (ENSMZEG00005004540) #9	ENSMZEG00005004573	rmi1 (ENSMZEG00005004595) #10	hnrnpk (ENSMZEG00005004611) #11	zgc:136564 (ENSMZEG00005004648) #12	KIF27 (ENSMZEG00005004665) #13	gkap1 (ENSMZEG00005004690) #15	UBQLN1 (ENSMZEG00005004709) #16	IDNK (ENSMZEG00005004724) #17	FRMD3 (ENSMZEG00005004753) #18	ENSMZEG00005004800 #18	ENSMZEG00005004807	RASEF (ENSMZEG00005004819) #20	ENSMZEG00005004858 #21	SMAD4 (ENSMZEG00005004897) #22	ENSMZEG00005004908 #23	tmed7 (ENSMZEG00005004914) #24	fem1c (ENSMZEG00005004920) #25	ENSMZEG00005004937	pggt1b (ENSMZEG00005004958) #27	trim36 (ENSMZEG00005004990) #28	CCSER1 (ENSMZEG00005005127) #29	ENSMZEG00005005141	ENSMZEG00005005149	ENSMZEG00005005154	grid2 (ENSMZEG00005005165) #30	atoh1a (ENSMZEG00005005199) #31	smarcad1a (ENSMZEG00005005203) #32	prf1.5 (ENSMZEG00005005222) #33	mpeg1.2 (ENSMZEG00005005244) #34
Eastern happy	MODERN SPECIES	3	SLC28A3 (ENSACLG00000018317) #9	rmi1 (ENSACLG00000018298) #10	hnrnpk (ENSACLG00000018220) #11	ENSACLG00000018206	zgc:136564 (ENSACLG00000018161) #12	KIF27 (ENSACLG00000018127) #13	ENSACLG00000018107	gkap1 (ENSACLG00000018078) #15	ENSACLG00000018050 #16	IDNK (ENSACLG00000018021) #17	FRMD3 (ENSACLG00000017916) #18	ENSACLG00000017877	ENSACLG00000017859	RASEF (ENSACLG00000017818) #20	ENSACLG00000017708 #21	SMAD4 (ENSACLG00000017640) #22	ENSACLG00000017634 #23	tmed7 (ENSACLG00000017622) #24	fem1c (ENSACLG00000017601) #25	ENSACLG00000017572	pggt1b (ENSACLG00000017539) #27	trim36 (ENSACLG00000017427) #28	CCSER1 (ENSACLG00000017382) #29	ENSACLG00000017363	ENSACLG00000017358	ENSACLG00000017280	grid2 (ENSACLG00000017186) #30	atoh1a (ENSACLG00000017166) #31	smarcad1a (ENSACLG00000017063) #32	prf1.5 (ENSACLG00000017037) #33	MPEG1 (ENSACLG00000017016) #34
P. nyererei	MODERN SPECIES	301	NTRK2 (ENSPNYG00000011160) #8	SLC28A3 (ENSPNYG00000010923) #9	rmi1 (ENSPNYG00000010885) #10	hnrnpk (ENSPNYG00000010838) #11	zgc:136564 (ENSPNYG00000010829) #12	ENSPNYG00000010817 #13	ENSPNYG00000010805	gkap1 (ENSPNYG00000010792) #15	ENSPNYG00000010773 #16	IDNK (ENSPNYG00000010763) #17	FRMD3 (ENSPNYG00000010715) #18	ENSPNYG00000010694 #18	ENSPNYG00000010680	RASEF (ENSPNYG00000010579) #20	ENSPNYG00000010511 #21	SMAD4 (ENSPNYG00000010448) #22	ENSPNYG00000010418 #23	tmed7 (ENSPNYG00000010405) #24	fem1c (ENSPNYG00000010383) #25	ENSPNYG00000010350 #26	pggt1b (ENSPNYG00000010326) #27	trim36 (ENSPNYG00000010292) #28	CCSER1 (ENSPNYG00000010248) #29	ENSPNYG00000010224	grid2 (ENSPNYG00000010183) #30	atoh1a (ENSPNYG00000010136) #31	smarcad1a (ENSPNYG00000010087) #32	prf1.5 (ENSPNYG00000010054) #33	MPEG1 (ENSPNYG00000010040) #34	si:ch211-103n10.5 (ENSPNYG00000009985)	tspan36 (ENSPNYG00000009942) #36
Burton s mouthbrooder	MODERN SPECIES	283	naa35 (ENSHBUG00000010050)	agtpbp1 (ENSHBUG00000010183) #7	NTRK2 (ENSHBUG00000010215) #8	SLC28A3 (ENSHBUG00000010235) #9	rmi1 (ENSHBUG00000010243) #10	hnrnpk (ENSHBUG00000010255) #11	ENSHBUG00000010266 #13	zgc:136564 (ENSHBUG00000010269) #12	ENSHBUG00000010278	gkap1 (ENSHBUG00000010291) #15	ENSHBUG00000010312 #16	IDNK (ENSHBUG00000000270) #17	FRMD3 (ENSHBUG00000010332) #18	RASEF (ENSHBUG00000010345) #20	ENSHBUG00000010435 #21	SMAD4 (ENSHBUG00000010531) #22	ENSHBUG00000010552 #23	tmed7 (ENSHBUG00000010564) #24	fem1c (ENSHBUG00000010591) #25	ENSHBUG00000010602 #26	pggt1b (ENSHBUG00000010629) #27	trim36 (ENSHBUG00000010912) #28	CCSER1 (ENSHBUG00000010939) #29	grid2 (ENSHBUG00000011010) #30	atoh1a (ENSHBUG00000011023) #31	smarcad1a (ENSHBUG00000011042) #32	prf1.5 (ENSHBUG00000011065) #33	mpeg1.2 (ENSHBUG00000011073) #34	si:ch211-103n10.5 (ENSHBUG00000011078)	tspan36 (ENSHBUG00000011085) #36	mapk4 (ENSHBUG00000011131) #37
Lyretail cichlid	MODERN SPECIES	306	agtpbp1 (ENSNBRG00000011767) #7	NTRK2 (ENSNBRG00000011797) #8	ENSNBRG00000011822	SLC28A3 (ENSNBRG00000011891) #9	rmi1 (ENSNBRG00000012155) #10	hnrnpk (ENSNBRG00000012167) #11	zgc:136564 (ENSNBRG00000012207) #12	ENSNBRG00000012221 #13	gkap1 (ENSNBRG00000012231) #15	ENSNBRG00000012246 #16	ENSNBRG00000012262 #17	FRMD3 (ENSNBRG00000012272) #18	ENSNBRG00000012321	RASEF (ENSNBRG00000012335) #20	ENSNBRG00000012385 #21	SMAD4 (ENSNBRG00000012448) #22	ENSNBRG00000012485 #23	tmed7 (ENSNBRG00000012507) #24	fem1c (ENSNBRG00000012522) #25	ENSNBRG00000012540 #26	pggt1b (ENSNBRG00000012580) #27	trim36 (ENSNBRG00000012611) #28	CCSER1 (ENSNBRG00000012650) #29	ENSNBRG00000012686	ENSNBRG00000012698	grid2 (ENSNBRG00000012712) #30	atoh1a (ENSNBRG00000012739) #31	smarcad1a (ENSNBRG00000012749) #32	prf1.5 (ENSNBRG00000012779) #33	MPEG1 (ENSNBRG00000012811) #34	MPEG1 (ENSNBRG00000012820) #34
Nile tilapia	MODERN SPECIES	3	ENSONIG00000038512	SLC28A3 (ENSONIG00000014999) #9	rmi1 (ENSONIG00000015001) #10	hnrnpk (ENSONIG00000015002) #11	zgc:136564 (ENSONIG00000015007) #12	KIF27 (ENSONIG00000015008) #13	ENSONIG00000042634	gkap1 (ENSONIG00000015010) #15	ENSONIG00000029651 #16	ENSONIG00000043191 #16	IDNK (ENSONIG00000029581) #17	FRMD3 (ENSONIG00000015018) #18	ENSONIG00000036497	RASEF (ENSONIG00000015021) #20	ENSONIG00000015027 #21	SMAD4 (ENSONIG00000041783) #22	ENSONIG00000037742 #23	tmed7 (ENSONIG00000015039) #24	fem1c (ENSONIG00000015041) #25	ENSONIG00000015042	pggt1b (ENSONIG00000042191) #27	trim36 (ENSONIG00000015049) #28	CCSER1 (ENSONIG00000015052) #29	grid2 (ENSONIG00000015054) #30	atoh1a (ENSONIG00000015058) #31	smarcad1a (ENSONIG00000015059) #32	prf1.5 (ENSONIG00000041518) #33	mpeg1.2 (ENSONIG00000042060) #34	si:ch211-103n10.5 (ENSONIG00000034485)	tspan36 (ENSONIG00000042291) #36	mapk4 (ENSONIG00000015070) #37
Midas cichlid	MODERN SPECIES	630	rmi1 (ENSACIG00000005305) #10	hnrnpk (ENSACIG00000005320) #11	zgc:136564 (ENSACIG00000005341) #12	ENSACIG00000005360 #13	ENSACIG00000005370	gkap1 (ENSACIG00000005379) #15	ENSACIG00000005399 #16	IDNK (ENSACIG00000005410) #17	FRMD3 (ENSACIG00000005425) #18	ENSACIG00000005459 #18	ENSACIG00000005532	RASEF (ENSACIG00000005549) #20	ENSACIG00000005577 #21	ENSACIG00000005602 ##21	ENSACIG00000005623	SMAD4 (ENSACIG00000005628) #22	ENSACIG00000005655 #23	tmed7 (ENSACIG00000005681) #24	fem1c (ENSACIG00000005693) #25
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Oryzias	ANCESTRAL SPECIES	7	ENSGT00390000009571.a.a.b	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00390000009571.a.a.b	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Indian medaka	MODERN SPECIES	11	naa35 (ENSOMEG00000023694)	agtpbp1 (ENSOMEG00000023673) #7	NTRK2 (ENSOMEG00000023654) #8	SLC28A3 (ENSOMEG00000023640) #9	rmi1 (ENSOMEG00000023629) #10	hnrnpk (ENSOMEG00000023618) #11	zgc:136564 (ENSOMEG00000023598) #12	KIF27 (ENSOMEG00000023581) #13	ENSOMEG00000023555	gkap1 (ENSOMEG00000023537) #15	ENSOMEG00000023518 #16	IDNK (ENSOMEG00000023508) #17	FRMD3 (ENSOMEG00000023490) #18	RASEF (ENSOMEG00000023457) #20	ENSOMEG00000023407 #21	SMAD4 (ENSOMEG00000023362) #22	mex3b (ENSOMEG00000023339) #23	tmed7 (ENSOMEG00000023319) #24	fem1c (ENSOMEG00000023298) #25	CCDC112 (ENSOMEG00000023271) #26	pggt1b (ENSOMEG00000023242) #27	trim36 (ENSOMEG00000023192) #28	CCSER1 (ENSOMEG00000023145) #29	ENSOMEG00000023084	grid2 (ENSOMEG00000023067) #30	ENSOMEG00000023049	atoh1a (ENSOMEG00000023044) #31	smarcad1a (ENSOMEG00000023032) #32	prf1.5 (ENSOMEG00000023009) #33	mpeg1.2 (ENSOMEG00000000621) #34	si:ch211-103n10.5 (ENSOMEG00000022994)
Javanese ricefish	MODERN SPECIES	23	GOLM1 (ENSOJAG00000007520)	ENSOJAG00000007510	naa35 (ENSOJAG00000007406)	NTRK2 (ENSOJAG00000006967) #8	SLC28A3 (ENSOJAG00000006896) #9	rmi1 (ENSOJAG00000006873) #10	hnrnpk (ENSOJAG00000006835) #11	zgc:136564 (ENSOJAG00000006819) #12	ENSOJAG00000006798 #13	gkap1 (ENSOJAG00000006779) #15	ENSOJAG00000006770	IDNK (ENSOJAG00000006763) #17	FRMD3 (ENSOJAG00000005956) #18	RASEF (ENSOJAG00000023033) #20	ENSOJAG00000022806 #21	SMAD4 (ENSOJAG00000022692) #22	mex3b (ENSOJAG00000022687) #23	tmed7 (ENSOJAG00000022684) #24	fem1c (ENSOJAG00000022680) #25	pggt1b (ENSOJAG00000022640) #27	trim36 (ENSOJAG00000022504) #28	CCSER1 (ENSOJAG00000022487) #29	ENSOJAG00000022485	ENSOJAG00000022480	grid2 (ENSOJAG00000022423) #30	atoh1a (ENSOJAG00000022406) #31	smarcad1a (ENSOJAG00000022387) #32	prf1.5 (ENSOJAG00000022361) #33	mpeg1.2 (ENSOJAG00000022358) #34	si:ch211-103n10.5 (ENSOJAG00000022354)	tspan36 (ENSOJAG00000022330) #36
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00390000009571.a.a.b	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.s #34	ENSGT00390000008048.t #34	ENSGT00950000183089.d
Japanese Medaka HdrR	MODERN SPECIES	23	ENSORLG00000022249	naa35 (ENSORLG00000025189)	agtpbp1 (ENSORLG00000005317) #7	NTRK2 (ENSORLG00000005227) #8	SLC28A3 (ENSORLG00000005199) #9	rmi1 (ENSORLG00000005175) #10	hnrnpk (ENSORLG00000005161) #11	zgc:136564 (ENSORLG00000005140) #12	KIF27 (ENSORLG00000005126) #13	gkap1 (ENSORLG00000005111) #15	ENSORLG00000028966 #16	IDNK (ENSORLG00000028424) #17	FRMD3 (ENSORLG00000005087) #18	RASEF (ENSORLG00000005076) #20	ENSORLG00000005051 #21	SMAD4 (ENSORLG00000005020) #22	ENSORLG00000004985 #23	tmed7 (ENSORLG00000004971) #24	fem1c (ENSORLG00000004946) #25	CCDC112 (ENSORLG00000004928) #26	pggt1b (ENSORLG00000004917) #27	trim36 (ENSORLG00000004896) #28	CCSER1 (ENSORLG00000025234) #29	ENSORLG00000004885	grid2 (ENSORLG00000024663) #30	atoh1a (ENSORLG00000004876) #31	smarcad1a (ENSORLG00000004869) #32	prf1.5 (ENSORLG00000004857) #33	ENSORLG00000027013 #34	MPEG1 (ENSORLG00000022935) #34	si:ch211-103n10.5 (ENSORLG00000027969)
Chinese medaka	MODERN SPECIES	2334																SMAD4 (ENSOSIG00000004354) #22
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Aplocheiloidei	ANCESTRAL SPECIES	24	ENSGT00530000063675.b	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32
Turquoise killifish	MODERN SPECIES	1627	AGTPBP1 (ENSNFUG00015015782) #7	NTRK2 (ENSNFUG00015015969) #8	SLC28A3 (ENSNFUG00015016066) #9	ENSNFUG00015016410	RMI1 (ENSNFUG00015016412) #10	HNRNPK (ENSNFUG00015016420) #11	zgc:136564 (ENSNFUG00015016452) #12	ENSNFUG00015016489 #13	gkap1 (ENSNFUG00015016499) #15	ENSNFUG00015016511 #16	IDNK (ENSNFUG00015016517) #17	FRMD3 (ENSNFUG00015016538) #18	ENSNFUG00015016661	RASEF (ENSNFUG00015016668) #20	ENSNFUG00015016714 #21	SMAD4 (ENSNFUG00015017545) #22	MEX3C (ENSNFUG00015017604) #23	TMED7 (ENSNFUG00015017609) #24	FEM1C (ENSNFUG00015017616) #25	PGGT1B (ENSNFUG00015017630) #27	ENSNFUG00015017667	TRIM36 (ENSNFUG00015017700) #28	ENSNFUG00015017811	ENSNFUG00015017816	ablim3 (ENSNFUG00015017828)	CCSER1 (ENSNFUG00015017848) #29	CU138508.1 (ENSNFUG00015017857)	ENSNFUG00015017866	ENSNFUG00015017872	ENSNFUG00015017877	grid2 (ENSNFUG00015017899) #30
Mangrove rivulus	MODERN SPECIES	26	naa35 (ENSKMAG00000020739)	agtpbp1 (ENSKMAG00000020817) #7	NTRK2 (ENSKMAG00000020873) #8	SLC28A3 (ENSKMAG00000020902) #9	rmi1 (ENSKMAG00000020921) #10	hnrnpk (ENSKMAG00000020943) #11	KIF27 (ENSKMAG00000020967) #13	zgc:136564 (ENSKMAG00000021001) #12	ENSKMAG00000021010 #13	gkap1 (ENSKMAG00000021021) #15	IDNK (ENSKMAG00000021037) #17	FRMD3 (ENSKMAG00000021058) #18	ENSKMAG00000021096	RASEF (ENSKMAG00000021106) #20	ENSKMAG00000021130 #21	SMAD4 (ENSKMAG00000021172) #22	mex3b (ENSKMAG00000021181) #23	tmed7 (ENSKMAG00000021190) #24	fem1c (ENSKMAG00000021198) #25	ENSKMAG00000021207	pggt1b (ENSKMAG00000021222) #27	trim36 (ENSKMAG00000021253) #28	CCSER1 (ENSKMAG00000021304) #29	grid2 (ENSKMAG00000021319) #30	atoh1a (ENSKMAG00000021339) #31	smarcad1a (ENSKMAG00000021351) #32
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00390000008048.r #34	ENSGT00940000164067.C #33	ENSGT00390000008048.q #34	ENSGT00950000183089.d
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT01090000260294 #14	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00390000008048.r #34	ENSGT00940000164067.C #33	ENSGT00390000008048.q #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
Poecilia	ANCESTRAL SPECIES	3	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00390000008048.r #34	ENSGT00940000164067.C.t #33	ENSGT00390000008048.q #34	ENSGT00950000183089.d	ENSGT00940000164634 #36
NAME_6	ANCESTRAL SPECIES	51	ENSGT00390000002445	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT01090000261735	ENSGT00910000144252.d.a #32	ENSGT00390000008048.r #34	ENSGT00940000164067.C.t #33	ENSGT00390000008048.q #34	ENSGT00950000183089.d
Amazon molly	MODERN SPECIES	277	ENSPFOG00000018691	naa35 (ENSPFOG00000018700)	agtpbp1 (ENSPFOG00000018733) #7	NTRK2 (ENSPFOG00000018778) #8	SLC28A3 (ENSPFOG00000018815) #9	rmi1 (ENSPFOG00000018822) #10	hnrnpk (ENSPFOG00000018830) #11	zgc:136564 (ENSPFOG00000018840) #12	KIF27 (ENSPFOG00000018850) #13	gkap1 (ENSPFOG00000023536) #15	UBQLN1 (ENSPFOG00000018864) #16	IDNK (ENSPFOG00000018882) #17	FRMD3 (ENSPFOG00000018891) #18	RASEF (ENSPFOG00000018924) #20	ENSPFOG00000018960 #21	SMAD4 (ENSPFOG00000018987) #22	mex3b (ENSPFOG00000018999) #23	tmed7 (ENSPFOG00000019005) #24	fem1c (ENSPFOG00000019010) #25	ENSPFOG00000019020	pggt1b (ENSPFOG00000023905) #27	trim36 (ENSPFOG00000019032) #28	CCSER1 (ENSPFOG00000019060) #29	grid2 (ENSPFOG00000019080) #30	atoh1a (ENSPFOG00000019101) #31	ENSPFOG00000019103	ENSPFOG00000021845	smarcad1a (ENSPFOG00000019116) #32	MPEG1 (ENSPFOG00000019131) #34	prf1.5 (ENSPFOG00000019132) #33	MPEG1 (ENSPFOG00000019135) #34
Sailfin molly	MODERN SPECIES	80															ENSPLAG00000002399 #21	SMAD4 (ENSPLAG00000002354) #22	mex3b (ENSPLAG00000002303) #23	tmed7 (ENSPLAG00000002281) #24	fem1c (ENSPLAG00000002273) #25	ENSPLAG00000002255	pggt1b (ENSPLAG00000002239) #27	trim36 (ENSPLAG00000002224) #28	ENSPLAG00000002214 #29	ENSPLAG00000002208
Guppy	MODERN SPECIES	461	ENSPREG00000019409	naa35 (ENSPREG00000019309)	agtpbp1 (ENSPREG00000019219) #7	ENSPREG00000019197 #8	SLC28A3 (ENSPREG00000019163) #9	rmi1 (ENSPREG00000019082) #10	hnrnpk (ENSPREG00000018996) #11	zgc:136564 (ENSPREG00000018955) #12	KIF27 (ENSPREG00000018932) #13	gkap1 (ENSPREG00000018905) #15	IDNK (ENSPREG00000018885) #17	UBQLN1 (ENSPREG00000018871) #16	FRMD3 (ENSPREG00000018770) #18	RASEF (ENSPREG00000018728) #20	ENSPREG00000018613 #21	SMAD4 (ENSPREG00000018572) #22	mex3b (ENSPREG00000018559) #23	tmed7 (ENSPREG00000018549) #24	fem1c (ENSPREG00000018531) #25	pggt1b (ENSPREG00000018501) #27	trim36 (ENSPREG00000018400) #28	CCSER1 (ENSPREG00000018353) #29	grid2 (ENSPREG00000018297) #30	atoh1a (ENSPREG00000018256) #31	smarcad1a (ENSPREG00000018185) #32	prf1.5 (ENSPREG00000018141) #33	mpeg1.2 (ENSPREG00000018128) #34	si:ch211-103n10.5 (ENSPREG00000018117)	tspan36 (ENSPREG00000018105) #36	mapk4 (ENSPREG00000018092) #37	me2 (ENSPREG00000018059)
Platyfish	MODERN SPECIES	3	dusp2 (ENSXMAG00000014933)	MYORG (ENSXMAG00000012702)	ENSXMAG00000025624	ENSXMAG00000012701	rmi1 (ENSXMAG00000014961) #10	hnrnpk (ENSXMAG00000014985) #11	zgc:136564 (ENSXMAG00000015055) #12	KIF27 (ENSXMAG00000015065) #13	ENSXMAG00000022839 #14	gkap1 (ENSXMAG00000015077) #15	UBQLN1 (ENSXMAG00000026686) #16	IDNK (ENSXMAG00000021838) #17	FRMD3 (ENSXMAG00000015107) #18	RASEF (ENSXMAG00000015129) #20	ENSXMAG00000015157 #21	SMAD4 (ENSXMAG00000024615) #22	mex3b (ENSXMAG00000015283) #23	tmed7 (ENSXMAG00000015287) #24	fem1c (ENSXMAG00000015297) #25	ENSXMAG00000015309	pggt1b (ENSXMAG00000015322) #27	trim36 (ENSXMAG00000015327) #28	CCSER1 (ENSXMAG00000015341) #29	grid2 (ENSXMAG00000025837) #30	ENSXMAG00000026612	atoh1a (ENSXMAG00000015349) #31	smarcad1a (ENSXMAG00000015350) #32	prf1.5 (ENSXMAG00000015380) #33	mpeg1.2 (ENSXMAG00000015389) #34	si:ch211-103n10.5 (ENSXMAG00000021049)	tspan36 (ENSXMAG00000027417) #36
NAME_4	ANCESTRAL SPECIES	140	ENSGT00940000157707 #7	ENSGT00940000155181.c.a #8	ENSGT00390000016025.a #9	ENSGT00940000161055 #10	ENSGT00940000153434.c.a #11	ENSGT00390000002374 #12	ENSGT00940000157487 #13	ENSGT00940000169432	ENSGT00390000008742 #15	ENSGT00940000156437 #16	ENSGT00390000003364 #17	ENSGT00940000158577 #18	ENSGT00940000173441	ENSGT00940000159488 #20	ENSGT01030000234519.e.a.a.a.b.e #21	ENSGT00940000157435.a.a #22	ENSGT00940000160013 #23	ENSGT00940000158463 #24	ENSGT00940000158626 #25	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29
Sheepshead minnow	MODERN SPECIES	212	naa35 (ENSCVAG00000006514)	ENSCVAG00000006418	agtpbp1 (ENSCVAG00000006415) #7	NTRK2 (ENSCVAG00000006368) #8	rmi1 (ENSCVAG00000006285) #10	hnrnpk (ENSCVAG00000006278) #11	zgc:136564 (ENSCVAG00000006263) #12	ENSCVAG00000006237 #13	gkap1 (ENSCVAG00000006234) #15	ENSCVAG00000006226 #16	IDNK (ENSCVAG00000006217) #17	FRMD3 (ENSCVAG00000006189) #18	ENSCVAG00000006176 #18	RASEF (ENSCVAG00000006168) #20	ENSCVAG00000000177 #21	SMAD4 (ENSCVAG00000006109) #22	mex3b (ENSCVAG00000006043) #23	tmed7 (ENSCVAG00000006039) #24	fem1c (ENSCVAG00000006014) #25	pggt1b (ENSCVAG00000005993) #27	trim36 (ENSCVAG00000005963) #28	ENSCVAG00000005947 #29
Tiger tail seahorse	MODERN SPECIES	134	agtpbp1 (ENSHCOG00000011343) #7	NTRK2 (ENSHCOG00000011200) #8	SLC28A3 (ENSHCOG00000011170) #9	rmi1 (ENSHCOG00000011132) #10	hnrnpk (ENSHCOG00000011097) #11	zgc:136564 (ENSHCOG00000011087) #12	ENSHCOG00000011079	ENSHCOG00000011072 #14	ENSHCOG00000011059 #13	gkap1 (ENSHCOG00000011045) #15	IDNK (ENSHCOG00000011023) #17	FRMD3 (ENSHCOG00000011009) #18	ENSHCOG00000010983 #18	RASEF (ENSHCOG00000010976) #20	ENSHCOG00000010890 #21	SMAD4 (ENSHCOG00000010832) #22	ENSHCOG00000010812 #23	tmed7 (ENSHCOG00000010792) #24	ENSHCOG00000010742 #25
Pinecone sodierfish	MODERN SPECIES	23	agtpbp1 (ENSMMDG00005024668) #7	NTRK2 (ENSMMDG00005024674) #8	SLC28A3 (ENSMMDG00005024675) #9	rmi1 (ENSMMDG00005024676) #10	hnrnpk (ENSMMDG00005024677) #11	zgc:136564 (ENSMMDG00005024678) #12	ENSMMDG00005024679 #13	gkap1 (ENSMMDG00005024681) #15	UBQLN1 (ENSMMDG00005024682) #16	IDNK (ENSMMDG00005024683) #17	ENSMMDG00005024684 #18	FRMD3 (ENSMMDG00005024685) #18	ENSMMDG00005024686 #18	RASEF (ENSMMDG00005024687) #20	ENSMMDG00005024701 #21	SMAD4 (ENSMMDG00005024765) #22	ENSMMDG00005024771 #23	tmed7 (ENSMMDG00005024772) #24	fem1c (ENSMMDG00005024773) #25	CCDC112 (ENSMMDG00005024774) #26	pggt1b (ENSMMDG00005024775) #27	trim36 (ENSMMDG00005024776) #28	CCSER1 (ENSMMDG00005004184) #29	ENSMMDG00005004192	grid2 (ENSMMDG00005004226) #30	atoh1a (ENSMMDG00005004738) #31	smarcad1a (ENSMMDG00005004747) #32	prf1.5 (ENSMMDG00005004889) #33	mpeg1.2 (ENSMMDG00005004921) #34	si:ch211-103n10.5 (ENSMMDG00005004927)	tspan36 (ENSMMDG00005004929) #36
Cod	MODERN SPECIES	19	ENSGMOG00000011608	rfc5 (ENSGMOG00000011597)	KSR2 (ENSGMOG00000007629)	nos1 (ENSGMOG00000014839)	ENSGMOG00000016792	nipsnap1 (ENSGMOG00000016779)	ENSGMOG00000031271	spring1 (ENSGMOG00000016751)	rnft2 (ENSGMOG00000016732)	fbxw8 (ENSGMOG00000016706)	tesca (ENSGMOG00000016683)	FBXO21 (ENSGMOG00000016647)	nf2a (ENSGMOG00000016615)	ENSGMOG00000005187	ENSGMOG00000005865 #21	ENSGMOG00000005844 #22	ENSGMOG00000026161 #23	TMED7 (ENSGMOG00000005819) #24	fem1c (ENSGMOG00000005806) #25	PGGT1B (ENSGMOG00000005781) #27	trim36 (ENSGMOG00000005757) #28	CCSER1 (ENSGMOG00000005739) #29	ENSGMOG00000029224	ENSGMOG00000026145	grid2 (ENSGMOG00000012315) #30	ENSGMOG00000033769	smarcad1a (ENSGMOG00000018995) #32	prf1.5 (ENSGMOG00000018988) #33	mpeg1.3 (ENSGMOG00000025509) #34	tspan36 (ENSGMOG00000017273) #36	mapk4 (ENSGMOG00000027904) #37
Protacanthopterygii	ANCESTRAL SPECIES	74	ENSGT00940000167760	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00530000064550.A	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a.c	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000163530
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	73	ENSGT00950000183128.A.a #27	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #30	ENSGT00940000160064.b.a #31	ENSGT00910000144252.d.a.d #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d.d	ENSGT00940000164634.k #36	ENSGT00940000159850.c #37	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.e	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00950000183128.A.a #27	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #30	ENSGT00940000160064.b.a #31	ENSGT00910000144252.d.a.d #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d.d	ENSGT00940000164634.k #36	ENSGT00940000159850.c #37	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.f.b	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
Salmo	ANCESTRAL SPECIES		ENSGT00950000183128.A.a #27	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #30	ENSGT00940000160064.b.a #31	ENSGT00910000144252.d.a.d #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00390000008048.h #34	ENSGT00950000183089.d.d	ENSGT00940000164634.k #36	ENSGT00940000159850.c #37	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.e	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
River trout	MODERN SPECIES	19	ENSSTUG00000030737	grid2 (ENSSTUG00000030753) #30	atoh1a (ENSSTUG00000031039) #31	ENSSTUG00000031048	ENSSTUG00000031052	smarcad1a (ENSSTUG00000031068) #32	HPGDS (ENSSTUG00000031808)	prf1.5 (ENSSTUG00000031842) #33	MPEG1 (ENSSTUG00000031848) #34	si:ch211-103n10.5 (ENSSTUG00000031853)	tspan36 (ENSSTUG00000031864) #36	mapk4 (ENSSTUG00000031881) #37	me2 (ENSSTUG00000031924)	aptx (ENSSTUG00000033812)	elac1 (ENSSTUG00000033819)	SMAD4 (ENSSTUG00000033858) #22	MEX3C (ENSSTUG00000034058)	STPG2 (ENSSTUG00000034065)	UNC5C (ENSSTUG00000034129)	ENSSTUG00000035850	bmpr1ba (ENSSTUG00000035860)	pdlim5a (ENSSTUG00000036059)	opn4xb (ENSSTUG00000036157)	EGFLAM (ENSSTUG00000036204)	GDNF (ENSSTUG00000036540)	ndc80 (ENSSTUG00000036560)	ndc80 (ENSSTUG00000036721)	nipbla (ENSSTUG00000036815)	slc1a3a (ENSSTUG00000036851)	ENSSTUG00000036895	lmbrd2a (ENSSTUG00000036910)
Atlantic salmon	MODERN SPECIES	16	trim36 (ENSSSAG00000044392) #28	CCSER1 (ENSSSAG00000044369) #29	grid2 (ENSSSAG00000076292) #30	ENSSSAG00000100858	ENSSSAG00000106044	atoh1a (ENSSSAG00000092250) #31	smarcad1a (ENSSSAG00000076233) #32	hpgds (ENSSSAG00000076223)	prf1.5 (ENSSSAG00000076217) #33	mpeg1 (ENSSSAG00000076214) #34	TSN3 (ENSSSAG00000076207) #36	si:ch211-103n10.5 (ENSSSAG00000082132)	mapk4 (ENSSSAG00000093709) #37	ENSSSAG00000076206	me2 (ENSSSAG00000092707)	SMAD4 (ENSSSAG00000075963) #22	MEX3C (ENSSSAG00000115744)	stpg2 (ENSSSAG00000075952)	UNC5C (ENSSSAG00000075774)	ENSSSAG00000111944	bmpr1ba (ENSSSAG00000075538)	pdlim5a (ENSSSAG00000075509)	opn4xb (ENSSSAG00000075477)	ENSSSAG00000075690	ENSSSAG00000075744	ENSSSAG00000071537	ENSSSAG00000075746	ndc80 (ENSSSAG00000075612)	nipbla (ENSSSAG00000075753)	slc1a3a (ENSSSAG00000075770)	ENSSSAG00000101505
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00940000158373.m #28	ENSGT00940000153912.B.i #29	ENSGT00940000155192.u #30	ENSGT00940000160064.b.a #31	ENSGT00910000144252.d.a.d #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00970000196811.a.a	ENSGT00950000183089.d.d	ENSGT00940000164634.k #36	ENSGT00940000159850.c #37	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.f.b	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	12	ENSGT00940000153912.B.i #29	ENSGT00530000064550.A	ENSGT00940000155192.u #30	ENSGT00940000160064.b.a #31	ENSGT00910000144252.d.a.d #32	ENSGT00940000160278	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00970000196811.a.a	ENSGT00950000183089.d.d	ENSGT00940000164634.k #36	ENSGT00940000159850.c #37	ENSGT00950000183134.c.b	ENSGT00940000156806	ENSGT00730000111224	ENSGT00940000157435.a.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a.d	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e.c	ENSGT00390000015433.h	ENSGT00800000124150	ENSGT00390000004796.d.a	ENSGT00390000016767.r.a	ENSGT00530000063811.B.b.d	ENSGT00940000155182.a.d	ENSGT00940000156383.b.b	ENSGT00940000156871.p.d
Coho salmon	MODERN SPECIES	22	ENSOKIG00005005652	grid2 (ENSOKIG00005005228) #30	atoh1a (ENSOKIG00005005122) #31	ENSOKIG00005005119	ENSOKIG00005005112	smarcad1a (ENSOKIG00005004826) #32	HPGDS (ENSOKIG00005004762)	prf1.5 (ENSOKIG00005004749) #33	mpeg1.2 (ENSOKIG00005004742) #34	si:ch211-103n10.5 (ENSOKIG00005004738)	tspan36 (ENSOKIG00005004703) #36	mapk4 (ENSOKIG00005004699) #37	me2 (ENSOKIG00005003015)	aptx (ENSOKIG00005002740)	elac1 (ENSOKIG00005002737)	SMAD4 (ENSOKIG00005002696) #22	MEX3C (ENSOKIG00005002673)	STPG2 (ENSOKIG00005002652)	ENSOKIG00005002639	ENSOKIG00005002635	ENSOKIG00005002631	UNC5C (ENSOKIG00005001625)	bmpr1ba (ENSOKIG00005001467)	pdlim5a (ENSOKIG00005001400)	opn4xb (ENSOKIG00005001378)	EGFLAM (ENSOKIG00005001330)	GDNF (ENSOKIG00005001306)	ENSOKIG00005001290	ndc80 (ENSOKIG00005001262)	nipbla (ENSOKIG00005001188)	slc1a3a (ENSOKIG00005001132)
Chinook salmon	MODERN SPECIES	28	nr6a1a (ENSOTSG00005006904)	NR5A1 (ENSOTSG00005006885)	lhx2b (ENSOTSG00005006884)	atoh1a (ENSOTSG00005006883) #31	smarcad1a (ENSOTSG00005006882) #32	HPGDS (ENSOTSG00005006874)	prf1.5 (ENSOTSG00005006873) #33	mpeg1.2 (ENSOTSG00005006872) #34	ENSOTSG00005006871	si:ch211-103n10.5 (ENSOTSG00005006870)	tspan36 (ENSOTSG00005006869) #36	mapk4 (ENSOTSG00005006847) #37	me2 (ENSOTSG00005005270)	aptx (ENSOTSG00005005264)	elac1 (ENSOTSG00005005263)	SMAD4 (ENSOTSG00005005261) #22	MEX3C (ENSOTSG00005005259)	ENSOTSG00005005256	ENSOTSG00005005255	ENSOTSG00005005254	ENSOTSG00005005253	ENSOTSG00005005251	bcl2l16 (ENSOTSG00005005250)	ENSOTSG00005005248	ccn1l2 (ENSOTSG00005005246)	FKBP15 (ENSOTSG00005000457)	fgf17 (ENSOTSG00005000438)	ENSOTSG00005000435	ENSOTSG00005000432	rchy1 (ENSOTSG00005000428)	ENSOTSG00005000426
Rainbow trout	MODERN SPECIES	27	grid2 (ENSOMYG00000028019) #30	atoh1a (ENSOMYG00000014675) #31	ENSOMYG00000077172	smarcad1a (ENSOMYG00000014627) #32	HPGDS (ENSOMYG00000068733)	prf1.5 (ENSOMYG00000014593) #33	mpeg1.3 (ENSOMYG00000014585) #34	ENSOMYG00000050711	si:ch211-103n10.5 (ENSOMYG00000014573)	tspan36 (ENSOMYG00000014552) #36	ENSOMYG00000062587	mapk4 (ENSOMYG00000014535) #37	me2 (ENSOMYG00000010461)	aptx (ENSOMYG00000009236)	elac1 (ENSOMYG00000009221)	SMAD4 (ENSOMYG00000009189) #22	MEX3C (ENSOMYG00000075838)	STPG2 (ENSOMYG00000009152)	ENSOMYG00000075329	UNC5C (ENSOMYG00000009126)	bmpr1ba (ENSOMYG00000009032)	pdlim5a (ENSOMYG00000008880)	opn4xb (ENSOMYG00000004122)	ENSOMYG00000004270	rtgdnf (ENSOMYG00000004348)	ENSOMYG00000058117	ENSOMYG00000004439	nipbla (ENSOMYG00000004902)	slc1a3a (ENSOMYG00000005344)	lmbrd2a (ENSOMYG00000006085)	spef2 (ENSOMYG00000007664)
Huchen	MODERN SPECIES	553			grid2 (ENSHHUG00000016142) #30	atoh1a (ENSHHUG00000016173) #31	ENSHHUG00000016175	smarcad1a (ENSHHUG00000016183) #32	HPGDS (ENSHHUG00000016251)	prf1.5 (ENSHHUG00000016290) #33	mpeg1.2 (ENSHHUG00000016297) #34	tspan36 (ENSHHUG00000016304) #36	si:ch211-103n10.5 (ENSHHUG00000016339)	mapk4 (ENSHHUG00000016363) #37	me2 (ENSHHUG00000016397)	aptx (ENSHHUG00000016673)	elac1 (ENSHHUG00000016674)	SMAD4 (ENSHHUG00000016676) #22	MEX3C (ENSHHUG00000016710)	ENSHHUG00000016713	ENSHHUG00000016726
Salmoninae	ANCESTRAL SPECIES	1077													ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00940000178875
Huchen	MODERN SPECIES	701													RASEF (ENSHHUG00000047429) #20	ENSHHUG00000047466 #21	mapkapk5 (ENSHHUG00000047663)	SMAD4 (ENSHHUG00000047746) #22	ENSHHUG00000047789	ENSHHUG00000047791	ENSHHUG00000047796	ENSHHUG00000047803	ENSHHUG00000047828	PPIC (ENSHHUG00000047832)
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00950000183128.A.b #27	ENSGT00940000158626.l #25	ENSGT00940000158463.d #24	ENSGT00390000018226.i	ENSGT00970000193421.C.a.oc	ENSGT00390000001500.h	ENSGT00940000156565.s.b	ENSGT00940000158343.d.b	ENSGT00910000144204.a.b	ENSGT00940000166026.b	ENSGT00950000183191.b.c	ENSGT00940000156812.e	ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00940000178875	ENSGT00530000064699	ENSGT00940000159244.a.d	ENSGT00950000182925.A.b	ENSGT00950000183125.b.a.a.a.a.b.d
Salmo	ANCESTRAL SPECIES	58			ENSGT00940000154446.b.a.a.a.a.b	ENSGT00940000154308.A.b.b.i.b	ENSGT00440000039084.a.a	ENSGT00950000182843.a.b	ENSGT00940000158664.l	ENSGT00940000162790.b.i.a	ENSGT00990000211660	ENSGT00940000157147.d	ENSGT00950000183125.b.a.a.a.a.b.d	ENSGT00950000182925.A.b	ENSGT00940000159244.a.d	ENSGT00530000064699	ENSGT00940000159786.a	ENSGT00940000157435.a.a.b #22	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000159488.k.a #20	ENSGT00940000156812.e	ENSGT00950000183191.b.c	ENSGT00940000166026.b	ENSGT00910000144204.a.b	ENSGT00940000158343.d.b	ENSGT00940000156565.s.b	ENSGT00390000001500.h	ENSGT00970000193421.C.a.oc	ENSGT00390000018226.i	ENSGT00940000158463.d #24	ENSGT00940000158626.l #25	ENSGT00950000183128.A.b #27	ENSGT00940000158373.n #28
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000071630	snap29 (ENSSSAG00000071637)	ENSSSAG00000099085	ENSSSAG00000071643	ENSSSAG00000071645	ENSSSAG00000086946	ENSSSAG00000071654	ENSSSAG00000108384	ENSSSAG00000087961	ENSSSAG00000071734	ENSSSAG00000111634	ENSSSAG00000074802	ENSSSAG00000116131	ENSSSAG00000074808	ENSSSAG00000074815	ENSSSAG00000074833 #22	ENSSSAG00000116675	ENSSSAG00000108971	ENSSSAG00000075144 #21	ENSSSAG00000078042 #20	ENSSSAG00000078056	ENSSSAG00000082482	ENSSSAG00000109292	ENSSSAG00000078135	ENSSSAG00000078141	ENSSSAG00000078154	ENSSSAG00000121027	SEMA6A (ENSSSAG00000078215)	COMMD10 (ENSSSAG00000078252)	AP3S1 (ENSSSAG00000078268)	CDO1 (ENSSSAG00000006148)
River trout	MODERN SPECIES	39		ENSSTUG00000011299	ENSSTUG00000011316	ENSSTUG00000011349	ENSSTUG00000011361	snap29 (ENSSTUG00000011366)	ENSSTUG00000011395	serpind1 (ENSSTUG00000011400)	brd3b (ENSSTUG00000011419)	ENSSTUG00000011433	plpp7a (ENSSTUG00000011446)	ENSSTUG00000011504	ENSSTUG00000013400	PPIC (ENSSTUG00000013407)	ENSSTUG00000013434	SMAD4 (ENSSTUG00000013451) #22	ENSSTUG00000013519	ENSSTUG00000014212 #21	RASEF (ENSSTUG00000014934) #20	atxn2 (ENSSTUG00000015111)	SH2B3 (ENSSTUG00000015290)	ENSSTUG00000015298	prr16 (ENSSTUG00000015305)	ENSSTUG00000015311	sema6a (ENSSTUG00000015379)	COMMD10 (ENSSTUG00000015534)	AP3S1 (ENSSTUG00000015550)	cdo1 (ENSSTUG00000015603)	tmed7 (ENSSTUG00000015630) #24	fem1c (ENSSTUG00000015663) #25	pggt1b (ENSSTUG00000015673) #27
Oncorhynchus	ANCESTRAL SPECIES	58	ENSGT00940000158373.n #28	ENSGT00950000183128.A.b #27	ENSGT00940000158626.l #25	ENSGT00940000158463.d #24	ENSGT00390000018226.i	ENSGT00970000193421.C.a.oc	ENSGT00940000156565.s.b	ENSGT00940000158343.d.b	ENSGT00910000144204.a.b	ENSGT00940000166026.b	ENSGT00950000183191.b.c	ENSGT00940000156812.e	ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00940000178875	ENSGT00940000159786.a	ENSGT00950000182925.A.b	ENSGT00950000183125.b.a.a.a.a.b.d	ENSGT00940000157147.d
Oncorhynchus_a	ANCESTRAL SPECIES	61	ENSGT00940000158373.n #28	ENSGT00950000183128.A.b #27	ENSGT00940000158626.l #25	ENSGT00940000158463.d #24	ENSGT00390000018226.i	ENSGT00970000193421.C.a.oc	ENSGT00940000156565.s.b	ENSGT00940000158343.d.b	ENSGT00910000144204.a.b	ENSGT00940000166026.b	ENSGT00950000183191.b.c	ENSGT00940000156812.e	ENSGT00940000159488.k.a #20	ENSGT01030000234519.e.a.a.a.b.e.b #21	ENSGT00940000154089.b.h	ENSGT00940000157435.a.a.b #22	ENSGT00530000064699	ENSGT00940000159244.a.d	ENSGT00940000159786.a	ENSGT00950000182925.A.b	ENSGT00950000183125.b.a.a.a.a.b.d	ENSGT00940000157147.d
Chinook salmon	MODERN SPECIES	3	CCSER1 (ENSOTSG00005039800) #29	trim36 (ENSOTSG00005039802) #28	pggt1b (ENSOTSG00005039806) #27	fem1c (ENSOTSG00005039807) #25	tmed7 (ENSOTSG00005039808) #24	cdo1 (ENSOTSG00005039811)	AP3S1 (ENSOTSG00005039813)	sema6a (ENSOTSG00005039834)	hsd17b4 (ENSOTSG00005040119)	prr16 (ENSOTSG00005040121)	SH2B3 (ENSOTSG00005040126)	atxn2 (ENSOTSG00005040129)	RASEF (ENSOTSG00005040132) #20	ENSOTSG00005040150 #21	mapkapk5 (ENSOTSG00005042038)	SMAD4 (ENSOTSG00005042083) #22	ENSOTSG00005042113	ENSOTSG00005042114	PPIC (ENSOTSG00005042115)	ENSOTSG00005042116	ENSOTSG00005042117	kif6 (ENSOTSG00005042119)	kcnk5a (ENSOTSG00005042122)	fam184aa (ENSOTSG00005042123)	SYT14 (ENSOTSG00005042125)	gnmt (ENSOTSG00005042126)	manea (ENSOTSG00005042127)	fut9a (ENSOTSG00005042128)	fhl5 (ENSOTSG00005042129)	col10a1a (ENSOTSG00005042130)	MAPK8IP1 (ENSOTSG00005042131)
Coho salmon	MODERN SPECIES	28	fem1c (ENSOKIG00005035272) #25	TMED7 (ENSOKIG00005035292) #24	cdo1 (ENSOKIG00005035373)	AP3S1 (ENSOKIG00005035418)	SEMA6A (ENSOKIG00005035496)	ENSOKIG00005035725	PRR16 (ENSOKIG00005035816)	ENSOKIG00005035823	SH2B3 (ENSOKIG00005035854)	atxn2 (ENSOKIG00005035911)	RASEF (ENSOKIG00005036936) #20	ENSOKIG00005037182	ENSOKIG00005037189	ENSOKIG00005037266 #21	MAPKAPK5 (ENSOKIG00005038172)	SMAD4 (ENSOKIG00005038755) #22	ENSOKIG00005038891	ENSOKIG00005038912	PPIC (ENSOKIG00005038940)	ENSOKIG00005038961	plpp7a (ENSOKIG00005038972)	MAPK8IP1 (ENSOKIG00005038986)	ENSOKIG00005039002	col10a1a (ENSOKIG00005039061)	fhl5 (ENSOKIG00005039069)	fut9a (ENSOKIG00005039106)	manea (ENSOKIG00005039113)	gnmt (ENSOKIG00005039118)	SYT14 (ENSOKIG00005039135)	fam184aa (ENSOKIG00005039157)	kcnk5a (ENSOKIG00005039185)
Rainbow trout	MODERN SPECIES	2	PGGT1B (ENSOMYG00000003252) #27	fem1c (ENSOMYG00000003240) #25	TMED7 (ENSOMYG00000003187) #24	AP3S1 (ENSOMYG00000046925)	ENSOMYG00000046915	ENSOMYG00000046643	ENSOMYG00000076041	ENSOMYG00000046474	ENSOMYG00000046466	ENSOMYG00000046455	ENSOMYG00000046396	ENSOMYG00000046379 #20	ENSOMYG00000045443 #21	ENSOMYG00000075476	ENSOMYG00000045241	ENSOMYG00000045206 #22	ENSOMYG00000045198	ENSOMYG00000045186	ENSOMYG00000045179	ENSOMYG00000045176	ENSOMYG00000045069	ENSOMYG00000049126	ENSOMYG00000070279	ENSOMYG00000045091	ENSOMYG00000045064	ENSOMYG00000050574	ENSOMYG00000045060	ENSOMYG00000048969	ENSOMYG00000044705	ENSOMYG00000044749	ENSOMYG00000021861
Northern pike	MODERN SPECIES	12	sema6a (ENSELUG00000019137)	DMXL1 (ENSELUG00000019280)	hsd17b4 (ENSELUG00000019400)	prr16 (ENSELUG00000000832)	ENSELUG00000019436	SH2B3 (ENSELUG00000026805)	atxn2 (ENSELUG00000019632)	ENSELUG00000019708	ENSELUG00000000871 #21	RASEF (ENSELUG00000019855) #20	FRMD3 (ENSELUG00000000878) #18	idnk (ENSELUG00000020041) #17	me2 (ENSELUG00000020081)	aptx (ENSELUG00000028256)	elac1 (ENSELUG00000020106)	SMAD4 (ENSELUG00000020159) #22	MEX3C (ENSELUG00000020179)	STPG2 (ENSELUG00000020348)	ENSELUG00000034665	UNC5C (ENSELUG00000020447)	ENSELUG00000029675	bmpr1ba (ENSELUG00000020490)	pdlim5a (ENSELUG00000020544)	opn4xb (ENSELUG00000001460)	EGFLAM (ENSELUG00000020787)	GDNF (ENSELUG00000020816)	ndc80 (ENSELUG00000000915)	nipbla (ENSELUG00000021054)	slc1a3a (ENSELUG00000021115)	lmbrd2a (ENSELUG00000021196)	UGT3A2 (ENSELUG00000021227)
Otomorpha	ANCESTRAL SPECIES	71	ENSGT00940000153988.B #26	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT01030000235745	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048 #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c	ENSGT00940000155464.a.a
Otophysi	ANCESTRAL SPECIES	281												ENSGT00920000149159	ENSGT00940000156901.B	ENSGT00950000183134.c.b	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a.e	ENSGT00940000155292.db.a	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00390000010427.c	ENSGT00940000155464.a.a	ENSGT00940000161387	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00730000112225
Characiphysae	ANCESTRAL SPECIES	225												ENSGT00920000149159	ENSGT00940000156901.B	ENSGT00950000183134.c.b.a	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.c.a
Channel catfish	MODERN SPECIES	14	ENSIPUG00000002371	tal2 (ENSIPUG00000002366)	ugt2b5 (ENSIPUG00000001375)	GAK (ENSIPUG00000001211)	ENSIPUG00000001183	lifra (ENSIPUG00000001153)	spef2 (ENSIPUG00000001003)	ENSIPUG00000000979	lmbrd2a (ENSIPUG00000000959)	slc1a3a (ENSIPUG00000000944)	EGFLAM (ENSIPUG00000023628)	pdlim5 (ENSIPUG00000023626)	ostf1 (ENSIPUG00000023624)	ENSIPUG00000023623	me2 (ENSIPUG00000023618)	SMAD4 (ENSIPUG00000023608) #22	ENSIPUG00000023604	paip1 (ENSIPUG00000023598)	mybbp1a (ENSIPUG00000023590)	fgf10 (ENSIPUG00000023587)	adamts12 (ENSIPUG00000023573)	agpat9 (ENSIPUG00000023560)	tnksb (ENSIPUG00000023527)	atp5meb (ENSIPUG00000023521)	idua (ENSIPUG00000023514)	rchy1 (ENSIPUG00000023505)	ENSIPUG00000023438	ENSIPUG00000023397	ENSIPUG00000023389	RUSC2 (ENSIPUG00000023364)	ENSIPUG00000023348
Characiphysae_b	ANCESTRAL SPECIES	254												ENSGT00920000149159	ENSGT00940000156901.B	ENSGT00950000183134.c.b.a	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.c.a
Characoidei	ANCESTRAL SPECIES	333												ENSGT00920000149159	ENSGT00940000156901.B	ENSGT00950000183134.c.b.a	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.c.a	ENSGT00390000018651.b	ENSGT00940000155464.a.b
Mexicana tetra	MODERN SPECIES	28	pias2 (ENSAMXG00000002435)	MN1 (ENSAMXG00000013235)	PITPNB (ENSAMXG00000030401)	ENSAMXG00000034576	TTC28 (ENSAMXG00000013238)	ENSAMXG00000040861	ENSAMXG00000041958	ENSAMXG00000039595	ENSAMXG00000035142	ENSAMXG00000037751	ostf1 (ENSAMXG00000035744)	ENSAMXG00000029122	me2 (ENSAMXG00000041378)	elac1 (ENSAMXG00000043092)	ENSAMXG00000042514	SMAD4 (ENSAMXG00000003756) #22	ENSAMXG00000035146	ENSAMXG00000036076	lmbrd2a (ENSAMXG00000040844)	slc1a3a (ENSAMXG00000038269)	ENSAMXG00000033635	EGFLAM (ENSAMXG00000040112)	ENSAMXG00000037966	opn4xb (ENSAMXG00000038102)	ENSAMXG00000032455	ENSAMXG00000034374	ENSAMXG00000031969	ENSAMXG00000043079	bmpr1ba (ENSAMXG00000029340)	ENSAMXG00000037387	ENSAMXG00000040657
Electric eel	MODERN SPECIES	1288														ENSEEEG00000008084	elac1 (ENSEEEG00000008081)	SMAD4 (ENSEEEG00000008023) #22	MEX3C (ENSEEEG00000008021)	ENSEEEG00000008020	bmpr1ba (ENSEEEG00000007475)
Cyprinoidei	ANCESTRAL SPECIES	16	ENSGT00390000000642	ENSGT00390000016543.d	ENSGT00390000016002.o.b.a	ENSGT00390000016002.o.b.b	ENSGT00940000156621.e.b	ENSGT00940000155188.B.a	ENSGT00940000170274	ENSGT00390000013415.b	ENSGT00940000162372.b	ENSGT00940000156515.b	ENSGT00940000158897.e.b	ENSGT00920000149159	ENSGT00940000156901.B	ENSGT00950000183134.c.b	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00940000155292.db.a	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00390000010427.c	ENSGT00940000155464.a.b	ENSGT00390000018651.b	ENSGT00390000005182.k.r.a.b.b	ENSGT00390000005182.k.r.a.b.a	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00940000155776.b	ENSGT00940000165259.a	ENSGT00390000002096
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	19	ENSGT00390000016002.o.b.a.a	ENSGT00940000156621.e.b.d	ENSGT00940000155188.B.a.f	ENSGT00940000170274.a.a	ENSGT00390000013415.b.a	ENSGT00940000162372.b.a	ENSGT00940000156515.b.d	ENSGT00940000156515.a.b	ENSGT00940000154184.A.u	ENSGT00940000158425.b	ENSGT00940000158897.e.b.a	ENSGT00920000149159.e	ENSGT00940000156901.B.c	ENSGT00950000183134.c.b.c	ENSGT00730000111224	ENSGT00940000157435.a.a.c #22	ENSGT00940000160973.a	ENSGT00950000182815.a.a.a.a.a.d.c.b	ENSGT00940000155919.b.a.e.a	ENSGT00940000155292.db.a.a.a.a	ENSGT01100000263502.B.a.b.b.b	ENSGT00390000010427.c.kc.a	ENSGT00940000155464.a.b.d	ENSGT00390000018651.b	ENSGT00390000005182.k.r.a.b.b.a.b	ENSGT00390000005182.k.r.a.b.a	ENSGT00390000005182.k.r.a.b.b.a.a	ENSGT00940000165259.b.b	ENSGT00940000155776.b.a.a	ENSGT00390000002096.h.b	ENSGT00530000063460.A.b.f.b.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	44	ENSCARG00000003444	mvb12ba (ENSCARG00000003449)	ENSCARG00000003452	ENSCARG00000003454	ENSCARG00000003462	MAPKAP1 (ENSCARG00000003500)	AJM1 (ENSCARG00000003519)	RABL6 (ENSCARG00000003522)	TRAF2 (ENSCARG00000003532)	ENSCARG00000003624	ENSCARG00000004454	TMEM233 (ENSCARG00000004462)	MSI1 (ENSCARG00000004468)	me2 (ENSCARG00000004496)	elac1 (ENSCARG00000004690)	SMAD4 (ENSCARG00000004726) #22	MEX3C (ENSCARG00000004905)	vamp5 (ENSCARG00000004909)	zgc:194202 (ENSCARG00000004915)	nsmfb (ENSCARG00000004950)	ENSCARG00000005234	ENSCARG00000005243	ENSCARG00000005246	tncb (ENSCARG00000005446)	ENSCARG00000011900	TRAF2 (ENSCARG00000011905)	trafd1 (ENSCARG00000011940)	ENSCARG00000011946	ENSCARG00000011949	niban2b (ENSCARG00000011965)	stxbp1b (ENSCARG00000012133)
Goldfish	MODERN SPECIES	44	ENSCARG00000001871	RABL6 (ENSCARG00000001866)	ENSCARG00000001864	TRAF2 (ENSCARG00000001854)	ENSCARG00000001084	zgc:73226 (ENSCARG00000000937)	ENSCARG00000000935	MSI1 (ENSCARG00000000923)	ENSCARG00000000911	crybb3 (ENSCARG00000000908)	pxna (ENSCARG00000000894)	ostf1 (ENSCARG00000000816)	ENSCARG00000000786	me2 (ENSCARG00000000741)	elac1 (ENSCARG00000000717)	SMAD4 (ENSCARG00000000700) #22	MEX3C (ENSCARG00000000690)	ENSCARG00000000688	bmpr1ba (ENSCARG00000000659)	pdlim5a (ENSCARG00000000615)	opn4xb (ENSCARG00000000590)	nipbla (ENSCARG00000000523)	slc1a3a (ENSCARG00000000482)	lmbrd2a (ENSCARG00000000384)	ENSCARG00000000247	ENSCARG00000000226	ENSCARG00000000216	ENSCARG00000000200	lifra (ENSCARG00000000172)	ENSCARG00000042760	RICTOR (ENSCARG00000042256)
Cyprininae_a	ANCESTRAL SPECIES	199	ENSGT00390000016002.o.b.a.a	ENSGT00940000156621.e.b.d	ENSGT00940000155188.B.a.f	ENSGT00940000170274.a.a	ENSGT00390000013415.b.a	ENSGT00940000162372.b.a	ENSGT00940000156515.b.d	ENSGT00940000156515.a.b	ENSGT00940000154184.A.u.b	ENSGT00940000158425.b.c	ENSGT00940000158897.e.b.a	ENSGT00920000149159.e	ENSGT00940000156901.B.c	ENSGT00950000183134.c.b.c	ENSGT00730000111224	ENSGT00940000157435.a.a.c #22	ENSGT00940000160973.a	ENSGT00950000182815.a.a.a.a.a.d.c.b	ENSGT00940000155919.b.a.e.a	ENSGT00940000155292.db.a.a.a.a	ENSGT01100000263502.B.a.b.b.b	ENSGT00390000010427.c.kc.a	ENSGT00940000155464.a.b.d	ENSGT00390000018651.b	ENSGT00390000005182.k.r.a.b.b.a.b	ENSGT00390000005182.k.r.a.b.a	ENSGT00390000005182.k.r.a.b.b.a.a	ENSGT00940000165259.b.b	ENSGT00940000155776.b.a.a	ENSGT00390000002096.h.b	ENSGT00530000063460.A.b.f.b.b
Common carp reference	MODERN SPECIES	7	MAPKAP1 (ENSCCRG00000024033)	ENSCCRG00000064613	ENSCCRG00000075954	ENSCCRG00000020854	ENSCCRG00000029000	ENSCCRG00000074753	zgc:73226 (ENSCCRG00000057836)	ENSCCRG00000053469	msi1a (ENSCCRG00000030590)	ENSCCRG00000070289	crybb3 (ENSCCRG00000077404)	pxna (ENSCCRG00000003089)	ostf1 (ENSCCRG00000003120)	ENSCCRG00000003274	me2 (ENSCCRG00000059443)	ENSCCRG00000076206 #22	MEX3C (ENSCCRG00000021262)	ENSCCRG00000054822	UNC5C (ENSCCRG00000021969)	bmpr1ba (ENSCCRG00000071840)	pdlim5a (ENSCCRG00000051309)	opn4xb (ENSCCRG00000051302)	ENSCCRG00000063750	nipbla (ENSCCRG00000016976)	slc1a3a (ENSCCRG00000072252)	lmbrd2a (ENSCCRG00000010996)	ENSCCRG00000065610	ENSCCRG00000064212	ENSCCRG00000074271	lifra (ENSCCRG00000011111)	ENSCCRG00000011126
Golden-line barbel	MODERN SPECIES	608	AJM1 (ENSSGRG00000006446)	ENSSGRG00000006447	ENSSGRG00000006448	TRAF2 (ENSSGRG00000006450)	ENSSGRG00000006477	ENSSGRG00000006632	zgc:73226 (ENSSGRG00000006633)	ENSSGRG00000006634	MSI1 (ENSSGRG00000006641)	ENSSGRG00000006767	crybb3 (ENSSGRG00000006770)	pxna (ENSSGRG00000006779)	ostf1 (ENSSGRG00000006791)	me2 (ENSSGRG00000006838)	elac1 (ENSSGRG00000006891)	SMAD4 (ENSSGRG00000006892) #22	MEX3C (ENSSGRG00000006894)	ENSSGRG00000006896
Cyprininae	ANCESTRAL SPECIES	25	ENSGT00940000157955.d.a.g	ENSGT00940000155945.i.a.f	ENSGT00940000163762.b.h.b	ENSGT00390000000642.j	ENSGT00390000016543.d.b	ENSGT00390000016002.o.b.b	ENSGT00940000156621.e.b.c	ENSGT00940000155188.B.a.e	ENSGT00390000013415.b.b	ENSGT00940000162372.b.b	ENSGT00940000156515.b.c	ENSGT00940000158897.e.b.b	ENSGT00920000149159.f	ENSGT00940000156901.B.d	ENSGT00950000183134.c.b.d	ENSGT00940000157435.a.a.d #22	ENSGT00940000160973.b	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.c.a	ENSGT00940000155919.b.a.e.b	ENSGT00940000155292.db.a.b	ENSGT01100000263502.B.a.b.b.a	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00390000010427.c.kc.b	ENSGT00940000155464.a.b.c	ENSGT00390000008160	ENSGT00940000165259.b.a	ENSGT00940000155776.b.b	ENSGT00390000002096.h.a	ENSGT00530000063460.A.b.f.b.a
Cyprininae_a	ANCESTRAL SPECIES	26	ENSGT00940000163762.b.h.b	ENSGT00390000000642.j	ENSGT00390000016543.d.b	ENSGT00390000016002.o.b.b	ENSGT00940000156621.e.b.c	ENSGT00940000155188.B.a.e	ENSGT00390000013415.b.b	ENSGT00940000162372.b.b	ENSGT00940000156515.b.c	ENSGT00940000154184.A.u.a	ENSGT00940000158425.b.d	ENSGT00940000158897.e.b.b	ENSGT00920000149159.f	ENSGT00940000156901.B.d	ENSGT00950000183134.c.b.d	ENSGT00940000157435.a.a.d #22	ENSGT00940000160973.b	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d.c.a	ENSGT00940000155919.b.a.e.b	ENSGT00940000155292.db.a.b	ENSGT01100000263502.B.a.b.b.a	ENSGT00940000158504	ENSGT00950000182993.A.b.f	ENSGT00390000010427.c.kc.b	ENSGT00940000155464.a.b.c	ENSGT00390000008160	ENSGT00940000165259.b.a	ENSGT00940000155776.b.b	ENSGT00390000002096.h.a	ENSGT00530000063460.A.b.f.b.a
Common carp reference	MODERN SPECIES	15	ENSCCRG00000060244	ENSCCRG00000024051	ENSCCRG00000024171	ENSCCRG00000073046	zgc:73226 (ENSCCRG00000027352)	ENSCCRG00000057841	ENSCCRG00000060190	ENSCCRG00000018552	ENSCCRG00000065485	ENSCCRG00000070382	pxna (ENSCCRG00000026270)	ostf1 (ENSCCRG00000081315)	MEX3C (ENSCCRG00000008400)	ENSCCRG00000082758	me2 (ENSCCRG00000031582)	ENSCCRG00000020234 #22	STPG2 (ENSCCRG00000008402)	UNC5C (ENSCCRG00000070864)	bmpr1ba (ENSCCRG00000021974)	pdlim5a (ENSCCRG00000051306)	opn4xb (ENSCCRG00000049757)	ENSCCRG00000031725	ENSCCRG00000054400	nipbla (ENSCCRG00000036463)	slc1a3a (ENSCCRG00000017031)	spef2 (ENSCCRG00000011607)	lifra (ENSCCRG00000058318)	ENSCCRG00000073320	ENSCCRG00000014850	ENSCCRG00000054002	paip1 (ENSCCRG00000041558)
Golden-line barbel	MODERN SPECIES	185							zgc:73226 (ENSSGRG00000015572)	ENSSGRG00000015573	MSI1 (ENSSGRG00000015587)	tnks1bp1 (ENSSGRG00000016328)	crybb3 (ENSSGRG00000016329)	ENSSGRG00000016333	ostf1 (ENSSGRG00000016335)	ENSSGRG00000016339	me2 (ENSSGRG00000016373)	SMAD4 (ENSSGRG00000016929) #22	MEX3C (ENSSGRG00000016930)	STPG2 (ENSSGRG00000016931)	UNC5C (ENSSGRG00000016933)	bmpr1ba (ENSSGRG00000017076)	pdlim5a (ENSSGRG00000017417)	opn4xb (ENSSGRG00000017430)	nipbla (ENSSGRG00000017474)	slc1a3a (ENSSGRG00000019065)	spef2 (ENSSGRG00000019658)	lifra (ENSSGRG00000019666)	ENSSGRG00000019671	RICTOR (ENSSGRG00000019679)	paip1 (ENSSGRG00000019853)	mybbp1a (ENSSGRG00000020004)	ENSSGRG00000020005
Zebrafish	MODERN SPECIES	20	MAPKAP1 (ENSDARG00000091777)	RABL6 (ENSDARG00000079046)	ENSDARG00000115005	TRAF2 (ENSDARG00000078378)	ENSDARG00000078362	zgc:73226 (ENSDARG00000023759)	ENSDARG00000102015	crybb3 (ENSDARG00000041301)	tnks1bp1 (ENSDARG00000068760)	msi1a (ENSDARG00000041299)	pxna (ENSDARG00000088590)	ostf1 (ENSDARG00000091555)	ENSDARG00000076853	me2 (ENSDARG00000100718)	elac1 (ENSDARG00000045095)	SMAD4 (ENSDARG00000012649) #22	ENSDARG00000061060	ENSDARG00000076082	ENSDARG00000104724	UNC5C (ENSDARG00000099133)	bmpr1ba (ENSDARG00000104100)	ENSDARG00000116302	pdlim5a (ENSDARG00000101777)	opn4xb (ENSDARG00000103259)	EGFLAM (ENSDARG00000099008)	GDNF (ENSDARG00000103764)	nipbla (ENSDARG00000098272)	slc1a3a (ENSDARG00000104431)	lmbrd2a (ENSDARG00000099566)	ENSDARG00000101556	ENSDARG00000101104
Clupeiformes	ANCESTRAL SPECIES	56	ENSGT00940000153432.B	ENSGT00500000044987	ENSGT00950000183128.A #27	ENSGT00940000158373 #28	ENSGT00940000153912.B #29	ENSGT00940000155192 #30	ENSGT00940000160064.b #31	ENSGT00910000144252.d.a #32	ENSGT00940000164067.C #33	ENSGT00390000008048.db #34	ENSGT00950000183089.d	ENSGT00940000164634 #36	ENSGT00940000159850 #37	ENSGT00950000183134.c.b	ENSGT00730000111224	ENSGT00940000157435.a.a #22	ENSGT00940000160973	ENSGT00390000001063	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00940000155919.b.a	ENSGT00940000155292.db.a	ENSGT01100000263502.B.a.b.b	ENSGT00940000158504	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00940000159368.a	ENSGT00390000009869	ENSGT00390000014052	ENSGT00390000006265.b.c	ENSGT00940000178065	ENSGT00940000162544.c.a
Atlantic herring	MODERN SPECIES	23	pggt1b (ENSCHAG00000001990) #27	trim36 (ENSCHAG00000002136) #28	CCSER1 (ENSCHAG00000002184) #29	grid2 (ENSCHAG00000002259) #30	ENSCHAG00000004118	ENSCHAG00000004171	atoh1a (ENSCHAG00000004209) #31	smarcad1a (ENSCHAG00000004280) #32	prf1.5 (ENSCHAG00000006834) #33	mpeg1.2 (ENSCHAG00000006843) #34	si:ch211-103n10.5 (ENSCHAG00000006861)	tspan36 (ENSCHAG00000006868) #36	mapk4 (ENSCHAG00000006890) #37	me2 (ENSCHAG00000006953)	elac1 (ENSCHAG00000008288)	SMAD4 (ENSCHAG00000008303) #22	MEX3C (ENSCHAG00000008582)	STPG2 (ENSCHAG00000008638)	UNC5C (ENSCHAG00000008751)	bmpr1ba (ENSCHAG00000012209)	pdlim5a (ENSCHAG00000012627)	opn4xb (ENSCHAG00000012656)	EGFLAM (ENSCHAG00000012688)	GDNF (ENSCHAG00000013121)	nipbla (ENSCHAG00000013147)	slc1a3a (ENSCHAG00000013333)	lmbrd2a (ENSCHAG00000013430)	UGT3A2 (ENSCHAG00000014471)	spef2 (ENSCHAG00000014510)	lifra (ENSCHAG00000014794)	ENSCHAG00000015001
Denticle herring	MODERN SPECIES	2	zgc:86811 (ENSDCDG00000014483)	marveld2b (ENSDCDG00000014481)	oclnb (ENSDCDG00000014477)	gtf2h2 (ENSDCDG00000014446)	erap1b (ENSDCDG00000014095)	ENSDCDG00000014023	ENSDCDG00000013953	ENSDCDG00000013945	ENSDCDG00000013928 #33	MPEG1 (ENSDCDG00000013915) #34	ENSDCDG00000013908	tspan36 (ENSDCDG00000013897) #36	mapk4 (ENSDCDG00000013888) #37	me2 (ENSDCDG00000013695)	elac1 (ENSDCDG00000013670)	SMAD4 (ENSDCDG00000013528) #22	MEX3C (ENSDCDG00000013473)	STPG2 (ENSDCDG00000013456)	ENSDCDG00000013403	bmpr1ba (ENSDCDG00000013370)	ENSDCDG00000013360	UNC5C (ENSDCDG00000013331)	bmpr1ba (ENSDCDG00000013271)	pdlim5a (ENSDCDG00000013256)	opn4xb (ENSDCDG00000013249)	EGFLAM (ENSDCDG00000013211)	GDNF (ENSDCDG00000013168)	nipbla (ENSDCDG00000005824)	slc1a3a (ENSDCDG00000005563)	lmbrd2a (ENSDCDG00000005353)	spef2 (ENSDCDG00000005328)
Clupeocephala	ANCESTRAL SPECIES	342												ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT00940000154877.A	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b	ENSGT01100000263502.B.a.b.a
Otomorpha	ANCESTRAL SPECIES	94	ENSGT00940000166301	ENSGT01100000263564.b	ENSGT00530000063749.c.b	ENSGT00940000159623	ENSGT00950000182923.C.b	ENSGT00940000156839	ENSGT00940000163530	ENSGT00940000156871.p	ENSGT00940000156383.b.d	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT01100000263502.B.a.b.a
Otophysi	ANCESTRAL SPECIES	20	ENSGT00940000166301	ENSGT01100000263564.b	ENSGT00530000063749.c.b	ENSGT00940000159623	ENSGT00950000182923.C.b	ENSGT00940000156839	ENSGT00940000163530	ENSGT00940000156871.p	ENSGT00940000156383.b.d	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00950000182815.a.a.a.a.a.c.a	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT01100000263502.B.a.b.a
Characiphysae	ANCESTRAL SPECIES	42	ENSGT00530000063749.c.b	ENSGT00940000159623	ENSGT00980000203443	ENSGT00950000182923.C.b	ENSGT00940000156839	ENSGT00940000163530	ENSGT00940000156871.p	ENSGT00940000156383.b.d	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00940000181291	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT01100000263502.B.a.b.a	ENSGT01100000263502.B.a.b.b	ENSGT00950000182993.A.b.f	ENSGT00940000155292.db.a	ENSGT00940000158504	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00730000112225	ENSGT00390000016532
Channel catfish	MODERN SPECIES	7	apc (ENSIPUG00000005807)	EPB41L4A (ENSIPUG00000005583)	linc-epb41l4a (ENSIPUG00000005559)	GAL3ST1 (ENSIPUG00000005551)	triap1 (ENSIPUG00000005532)	srsf9 (ENSIPUG00000005511)	ENSIPUG00000005414	git2b (ENSIPUG00000005248)	ENSIPUG00000005207	FAM222A (ENSIPUG00000005199)	ENSIPUG00000005182	ENSIPUG00000005174	ENSIPUG00000005136	npffr1l3 (ENSIPUG00000005114)	BMP10 (ENSIPUG00000005105)	SMAD4 (ENSIPUG00000005015) ##22	rfx3 (ENSIPUG00000004967)	glis3 (ENSIPUG00000004952)	UNC5C (ENSIPUG00000004839)	BMPR1B (ENSIPUG00000004770)	pdlim5b (ENSIPUG00000004731)	opn4xa (ENSIPUG00000004678)	gdnf (ENSIPUG00000004668)	WDR70 (ENSIPUG00000004634)	ENSIPUG00000004588	NUP155 (ENSIPUG00000004317)	nipblb (ENSIPUG00000004101)	slc1a3 (ENSIPUG00000004062)	ranbp3l (ENSIPUG00000004048)	icln (ENSIPUG00000004013)	ENSIPUG00000003955
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00530000063749.c.b	ENSGT00940000159623	ENSGT00980000203443	ENSGT00950000182923.C.b	ENSGT00940000156839	ENSGT00940000163530	ENSGT00940000156871.p	ENSGT00940000156383.b.d	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00940000181291	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT01100000263502.B.a.b.a	ENSGT01100000263502.B.a.b.b	ENSGT00950000182993.A.b.f	ENSGT00940000155292.db.a	ENSGT00940000158504	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00730000112225	ENSGT00390000016532
Characoidei	ANCESTRAL SPECIES	78	ENSGT00530000063749.c.b	ENSGT00940000159623	ENSGT00980000203443	ENSGT00950000182923.C.b	ENSGT00940000156839	ENSGT00940000163530	ENSGT00940000156871.p	ENSGT00940000156383.b.d	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00940000181291	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT01100000263502.B.a.b.a	ENSGT01100000263502.B.a.b.b	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c
Mexicana tetra	MODERN SPECIES	12	apc (ENSAMXG00000019300)	epb41l4a (ENSAMXG00000019284)	ENSAMXG00000035119	GAL3ST1 (ENSAMXG00000019276)	srsf9 (ENSAMXG00000032281)	triap1 (ENSAMXG00000034513)	SGSM1 (ENSAMXG00000019256)	git2b (ENSAMXG00000019239)	ENSAMXG00000035811	FAM222A (ENSAMXG00000042411)	ANKLE2 (ENSAMXG00000019231)	ENSAMXG00000019228	ENSAMXG00000019223	npffr1l3 (ENSAMXG00000036599)	BMP10 (ENSAMXG00000034592)	smad4a (ENSAMXG00000019219) ##22	rfx3 (ENSAMXG00000019201)	glis3 (ENSAMXG00000019181)	UNC5C (ENSAMXG00000007025)	bmpr1bb (ENSAMXG00000006998)	pdlim5b (ENSAMXG00000034634)	opn4xa (ENSAMXG00000006974)	EGFLAM (ENSAMXG00000006956)	gdnfa (ENSAMXG00000042733)	WDR70 (ENSAMXG00000006938)	ENSAMXG00000031985	ENSAMXG00000041226	nup155 (ENSAMXG00000006908)	nipblb (ENSAMXG00000006890)	slc1a3b (ENSAMXG00000000008)	ENSAMXG00000039562
Red-bellied piranha	MODERN SPECIES	174	apc (ENSPNAG00000019144)	epb41l4a (ENSPNAG00000004958)	linc-epb41l4a (ENSPNAG00000019283)	GAL3ST1 (ENSPNAG00000019295)	srsf9 (ENSPNAG00000003588)	triap1 (ENSPNAG00000019320)	SGSM1 (ENSPNAG00000019476)	git2b (ENSPNAG00000019596)	ENSPNAG00000019649	FAM222A (ENSPNAG00000003598)	ENSPNAG00000019678	ENSPNAG00000003606	ARVCF (ENSPNAG00000006953)	npffr1l3 (ENSPNAG00000019776)	BMP10 (ENSPNAG00000019783)	smad4a (ENSPNAG00000019854) ##22	rfx3 (ENSPNAG00000019929)	glis3 (ENSPNAG00000019950)	UNC5C (ENSPNAG00000007062)	bmpr1bb (ENSPNAG00000020132)	pdlim5b (ENSPNAG00000020177)	opn4xa (ENSPNAG00000020406)	EGFLAM (ENSPNAG00000020443)	gdnfa (ENSPNAG00000020453)
Electric eel	MODERN SPECIES	69	ENSEEEG00000012246	apc (ENSEEEG00000012244)	epb41l4a (ENSEEEG00000012240)	GAL3ST1 (ENSEEEG00000012239)	srsf9 (ENSEEEG00000012236)	triap1 (ENSEEEG00000012234)	SGSM1 (ENSEEEG00000012226)	git2b (ENSEEEG00000010081)	ENSEEEG00000010000	FAM222A (ENSEEEG00000009999)	ENSEEEG00000009990	ENSEEEG00000009982	ARVCF (ENSEEEG00000009980)	npffr1l3 (ENSEEEG00000009817)	ENSEEEG00000009814	smad4a (ENSEEEG00000009764) ##22	rfx3 (ENSEEEG00000009754)	glis3 (ENSEEEG00000009748)	UNC5C (ENSEEEG00000009738)	bmpr1bb (ENSEEEG00000009708)	pdlim5b (ENSEEEG00000009704)	gdnfa (ENSEEEG00000009703)	WDR70 (ENSEEEG00000009637)	ENSEEEG00000009623	nup155 (ENSEEEG00000009580)	nipblb (ENSEEEG00000009575)	slc1a3b (ENSEEEG00000009570)	ENSEEEG00000009566	ENSEEEG00000009398	ENSEEEG00000009395	ucp3 (ENSEEEG00000009394)
Cyprinoidei	ANCESTRAL SPECIES	137	ENSGT01030000234556.a.b.a	ENSGT00940000170277	ENSGT00940000163875.a.b.b	ENSGT00390000009554	ENSGT00390000008657	ENSGT00940000157189.c	ENSGT00940000156765.a.b	ENSGT00940000159359	ENSGT01030000234517.F	ENSGT00950000183181.B.b.l.a	ENSGT00530000063811.B.b	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c.a	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00730000112225	ENSGT00390000016532
Cyprininae	ANCESTRAL SPECIES	341	ENSGT01030000234556.a.b.a.e.a	ENSGT00940000163875.a.b.b	ENSGT00390000009554.e	ENSGT00390000008657	ENSGT00940000157189.c	ENSGT00940000156765.a.b.f	ENSGT00940000159359.p	ENSGT01030000234517.F.a	ENSGT00950000183181.B.b.l.a.e	ENSGT00530000063811.B.b.a	ENSGT00940000158044.b	ENSGT00940000157027.n.b.f	ENSGT00940000157027.n.b.e	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b.a	ENSGT00940000156896.a	ENSGT00950000182815.a.a.a.a.a.c.a.b	ENSGT00940000155919.b.b.e	ENSGT00940000155292.db.b.d	ENSGT01100000263502.B.a.b.a.a
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1	epb41l4a (ENSCARG00000007680)	GAL3ST1 (ENSCARG00000007656)	srsf9 (ENSCARG00000007654)	triap1 (ENSCARG00000007646)	ENSCARG00000005810	ENSCARG00000005738	akt2l (ENSCARG00000005681)	ENSCARG00000005672	ENSCARG00000005668	ENSCARG00000005661	ENSCARG00000005659	FAM222A (ENSCARG00000005655)	ENSCARG00000005650	ARVCF (ENSCARG00000005640)	npffr1l3 (ENSCARG00000005630)	smad4a (ENSCARG00000005529) ##22	rfx3 (ENSCARG00000005482)	vps26c (ENSCARG00000005463)	dyrk1aa (ENSCARG00000005235)	ENSCARG00000005200	riox2 (ENSCARG00000005190)	ENSCARG00000005183	ENSCARG00000005179	or42b1 (ENSCARG00000005177)	ENSCARG00000005170	ENSCARG00000005164	ENSCARG00000005159	ENSCARG00000005156	ENSCARG00000005153	smyd4 (ENSCARG00000005146)	RTN4RL1 (ENSCARG00000005138)
Goldfish	MODERN SPECIES	1	ENSCARG00000002173	ENSCARG00000002188	vaspa (ENSCARG00000002203)	akt2l (ENSCARG00000002228)	emsy (ENSCARG00000002289)	ENSCARG00000002337	ENSCARG00000002343	ENSCARG00000002349	mpzl1l (ENSCARG00000002360)	psmg1 (ENSCARG00000002379)	ets2 (ENSCARG00000002399)	erg (ENSCARG00000002414)	KCNJ6 (ENSCARG00000002421)	pigp (ENSCARG00000002431)	npffr1l3 (ENSCARG00000002443)	smad4a (ENSCARG00000002461) ##22	rfx3 (ENSCARG00000002594)	GRAMD1B (ENSCARG00000002613)	git2b (ENSCARG00000002635)	ENSCARG00000002706	ENSCARG00000002724	ENSCARG00000002783	pdxp (ENSCARG00000002786)	mier3a (ENSCARG00000002801)	grk5 (ENSCARG00000002871)	ash2l (ENSCARG00000003024)	pnx (ENSCARG00000003377)	aebp1a (ENSCARG00000003390)	ENSCARG00000003429	ENSCARG00000003437	ERAP1 (ENSCARG00000003511)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2275																smad4a (ENSCARG00000047816) ##22	rfx3 (ENSCARG00000047887)
Goldfish	MODERN SPECIES	28	ENSCARG00000041255	emsy (ENSCARG00000041238)	ENSCARG00000041198	ENSCARG00000041179	ENSCARG00000041116	tiprl (ENSCARG00000041090)	HLCS (ENSCARG00000041072)	dyrk1aa (ENSCARG00000040952)	ENSCARG00000040934	KCNJ6 (ENSCARG00000040905)	KCNJ15 (ENSCARG00000040897)	erg (ENSCARG00000040878)	BMP10 (ENSCARG00000040845)	npffr1l3 (ENSCARG00000040833)	ENSCARG00000040828	smad4a (ENSCARG00000040718) ##22	rfx3 (ENSCARG00000040635)	glis3 (ENSCARG00000040610)	ENSCARG00000040600	ENSCARG00000040324	wu:fb59d01 (ENSCARG00000040302)	ENSCARG00000040264	ENSCARG00000040249	ENSCARG00000040007	ENSCARG00000036543	tdgf1 (ENSCARG00000036444)	ENSCARG00000036438	ENSCARG00000036429	ENSCARG00000036420	ENSCARG00000036397	C3AR1 (ENSCARG00000036394)
Cyprininae_a	ANCESTRAL SPECIES	492								ENSGT01030000234517.F.a	ENSGT00950000183181.B.b.l.a.e	ENSGT00530000063811.B.b.a	ENSGT00940000158044.b	ENSGT00940000157027.n.b.f	ENSGT00940000157027.n.b.e	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b.a	ENSGT00940000156896.a	ENSGT00950000182815.a.a.a.a.a.c.a.b	ENSGT00940000155919.b.b.e	ENSGT00940000155292.db.b.d	ENSGT01100000263502.B.a.b.a.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	692													ARVCF (ENSSGRG00000005521)	npffr1l3 (ENSSGRG00000005514)	ENSSGRG00000005490	smad4a (ENSSGRG00000001496) ##22	rfx3 (ENSSGRG00000051785)	ENSSGRG00000051784	ENSSGRG00000051782
Golden-line barbel	MODERN SPECIES	1491										ENSSGRG00000013521	FAM222A (ENSSGRG00000013520)	ENSSGRG00000013431	ARVCF (ENSSGRG00000013429)	npffr1l3 (ENSSGRG00000013425)	BMP10 (ENSSGRG00000013423)	smad4a (ENSSGRG00000013355) ##22	rfx3 (ENSSGRG00000013352)
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	24	ENSCCRG00000064256	emsy (ENSCCRG00000014133)	ENSCCRG00000063205	akt2l (ENSCCRG00000003577)	vaspa (ENSCCRG00000079511)	ENSCCRG00000005331	ENSCCRG00000005334	si:ch1073-303d10.1 (ENSCCRG00000064626)	ENSCCRG00000021475	ENSCCRG00000060351	ENSCCRG00000064426	ENSCCRG00000053115	npffr1l3 (ENSCCRG00000078439)	rfx3 (ENSCCRG00000021805)	ENSCCRG00000024172	smad4a (ENSCCRG00000024119) ##22	glis3 (ENSCCRG00000010962)	ENSCCRG00000055442	UNC5C (ENSCCRG00000035330)	bmpr1bb (ENSCCRG00000035315)	pdlim5b (ENSCCRG00000008930)	opn4xa (ENSCCRG00000044217)	gdnfa (ENSCCRG00000058888)	ENSCCRG00000078953	ENSCCRG00000074117	ENSCCRG00000076193	ENSCCRG00000000412	nup155 (ENSCCRG00000052714)	ENSCCRG00000062549	srsf9 (ENSCCRG00000060700)	ENSCCRG00000031524
Common carp reference	MODERN SPECIES	32	KCNJ15 (ENSCCRG00000052917)	ets2 (ENSCCRG00000048007)	mpzl1l (ENSCCRG00000014154)	ENSCCRG00000014187	ENSCCRG00000018264	emsy (ENSCCRG00000009945)	vaspa (ENSCCRG00000082689)	ENSCCRG00000072512	ENSCCRG00000080391	ENSCCRG00000064876	ENSCCRG00000075108	ENSCCRG00000058451	ENSCCRG00000035795	npffr1l3 (ENSCCRG00000016302)	ENSCCRG00000056292	smad4a (ENSCCRG00000013106) ##22	rfx3 (ENSCCRG00000035878)	glis3 (ENSCCRG00000024813)	UNC5C (ENSCCRG00000076525)	bmpr1bb (ENSCCRG00000008248)	pdlim5b (ENSCCRG00000059606)	opn4xa (ENSCCRG00000009048)	ENSCCRG00000009051	ENSCCRG00000067347	ENSCCRG00000009055	nup155 (ENSCCRG00000006871)	ENSCCRG00000030007	srsf9 (ENSCCRG00000072908)	triap1 (ENSCCRG00000031285)	epb41l4a (ENSCCRG00000016643)	apc (ENSCCRG00000061639)
Zebrafish	MODERN SPECIES	1	ENSDARG00000040621	emsy (ENSDARG00000059059)	NHLRC3 (ENSDARG00000102127)	akt2l (ENSDARG00000103612)	vaspa (ENSDARG00000099690)	ENSDARG00000100197	ENSDARG00000074914	si:ch1073-303d10.1 (ENSDARG00000103006)	FAM222A (ENSDARG00000087585)	ENSDARG00000087910	ENSDARG00000042872	ARVCF (ENSDARG00000074329)	ENSDARG00000095223	npffr1l3 (ENSDARG00000010712)	BMP10 (ENSDARG00000109233)	smad4a (ENSDARG00000075226) ##22	ENSDARG00000110346	rfx3 (ENSDARG00000014550)	glis3 (ENSDARG00000069726)	UNC5C (ENSDARG00000087341)	bmpr1bb (ENSDARG00000102742)	pdlim5b (ENSDARG00000027600)	opn4xa (ENSDARG00000079129)	gdnfa (ENSDARG00000039959)	WDR70 (ENSDARG00000109022)	ENSDARG00000078257	nup155 (ENSDARG00000001777)	SGSM1 (ENSDARG00000075376)	triap1 (ENSDARG00000014963)	srsf9 (ENSDARG00000008097)	linc-epb41l4a (ENSDARG00000092467)
Clupeiformes	ANCESTRAL SPECIES	12	ENSGT00940000166301	ENSGT01100000263564.b	ENSGT00530000063749.c.b	ENSGT00940000159623	ENSGT00950000182923.C.b	ENSGT00940000156839	ENSGT00940000163530	ENSGT00940000156871.p	ENSGT00940000156383.b.d	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b	ENSGT01100000263502.B.a.b.a
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000008652	apc (ENSCHAG00000008492)	epb41l4a (ENSCHAG00000008091)	GAL3ST1 (ENSCHAG00000008035)	srsf9 (ENSCHAG00000008017)	triap1 (ENSCHAG00000007987)	ENSCHAG00000003311	git2b (ENSCHAG00000002217)	ENSCHAG00000002157	FAM222A (ENSCHAG00000002143)	ENSCHAG00000002110	ENSCHAG00000001985	ENSCHAG00000001619	npffr1l3 (ENSCHAG00000000815)	BMP10 (ENSCHAG00000027368)	smad4a (ENSCHAG00000027364) ##22	rfx3 (ENSCHAG00000027336)	glis3 (ENSCHAG00000027318)	UNC5C (ENSCHAG00000027171)	bmpr1bb (ENSCHAG00000027155)	pdlim5b (ENSCHAG00000027143)	opn4xa (ENSCHAG00000027134)	EGFLAM (ENSCHAG00000027100)	gdnfa (ENSCHAG00000027090)	ENSCHAG00000027088	WDR70 (ENSCHAG00000027037)	CABP7 (ENSCHAG00000027027)	ENSCHAG00000027025	uqcr10 (ENSCHAG00000027023)	ENSCHAG00000026934	ENSCHAG00000026891
Denticle herring	MODERN SPECIES	15	ENSDCDG00000002249	C3AR1 (ENSDCDG00000002253)	apc (ENSDCDG00000002261)	epb41l4a (ENSDCDG00000002302)	GAL3ST1 (ENSDCDG00000002312)	srsf9 (ENSDCDG00000002314)	triap1 (ENSDCDG00000002317)	SGSM1 (ENSDCDG00000002384)	git2b (ENSDCDG00000004105)	ENSDCDG00000004145	FAM222A (ENSDCDG00000004148)	ENSDCDG00000004152	ARVCF (ENSDCDG00000004159)	npffr1l3 (ENSDCDG00000004180)	BMP10 (ENSDCDG00000004250)	smad4a (ENSDCDG00000004267) ##22	rfx3 (ENSDCDG00000004292)	glis3 (ENSDCDG00000004456)	UNC5C (ENSDCDG00000004623)	ENSDCDG00000015109	pdlim5b (ENSDCDG00000015298)	opn4xa (ENSDCDG00000015312)	gdnfa (ENSDCDG00000015319)	WDR70 (ENSDCDG00000015371)	CABP7 (ENSDCDG00000017983)	zmat5 (ENSDCDG00000017990)	uqcr10 (ENSDCDG00000017997)	ENSDCDG00000018050	ENSDCDG00000018093	ENSDCDG00000018096	ENSDCDG00000018113
Euteleosteomorpha	ANCESTRAL SPECIES	89					ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000161387	ENSGT00940000155464.a.a	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT00940000154877.A	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b	ENSGT00940000155571.B	ENSGT00950000183027.a.b.c.b	ENSGT00950000183054.b.c	ENSGT00950000182924.A.b.a.a	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000157656.b
Acanthomorphata	ANCESTRAL SPECIES	33										ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00950000182923.C.b
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000166276	ENSGT00940000176908	ENSGT00730000111276	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Pinecone sodierfish	MODERN SPECIES	3	tpm2 (ENSMMDG00005007202)	tln1 (ENSMMDG00005007347)	FASTKD5 (ENSMMDG00005013712)	hmgcs1 (ENSMMDG00005013714)	ENSMMDG00005013720	ENSMMDG00005013728	ENSMMDG00005013729	YTHDC2 (ENSMMDG00005013738)	reep5 (ENSMMDG00005013766)	chd1 (ENSMMDG00005013821)	PAM (ENSMMDG00005015822)	macir (ENSMMDG00005015859)	ENSMMDG00005015865	syk (ENSMMDG00005015877)	BMP10 (ENSMMDG00005015878)	smad4a (ENSMMDG00005015880) ##22	rfx3 (ENSMMDG00005015981)	glis3 (ENSMMDG00005016661)	UNC5C (ENSMMDG00005016667)	bmpr1bb (ENSMMDG00005016697)	pdlim5b (ENSMMDG00005017642)	opn4xa (ENSMMDG00005017813)	gdnfa (ENSMMDG00005017829)	WDR70 (ENSMMDG00005017877)	ENSMMDG00005019135	FAM222A (ENSMMDG00005019140)	ENSMMDG00005019142	git2b (ENSMMDG00005019183)	ENSMMDG00005019797	srsf9 (ENSMMDG00005019812)	ENSMMDG00005019818
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Tiger tail seahorse	MODERN SPECIES	143	rab14 (ENSHCOG00000019224)	ABL1 (ENSHCOG00000019180)	exosc2 (ENSHCOG00000019130)	RIC1 (ENSHCOG00000019095)	ERMP1 (ENSHCOG00000019022)	oaz1b (ENSHCOG00000019012)	UHRF2 (ENSHCOG00000018996)	ENSHCOG00000018984	MLANA (ENSHCOG00000018979)	ENSHCOG00000018966	ENSHCOG00000018934	ENSHCOG00000018930	nup155 (ENSHCOG00000018914)	ENSHCOG00000018853	ENSHCOG00000018848	smad4a (ENSHCOG00000018817) ##22	rfx3 (ENSHCOG00000018764)	glis3 (ENSHCOG00000018717)	UNC5C (ENSHCOG00000000496)
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00940000176177	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Pomacentridae	ANCESTRAL SPECIES	12	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Pomacentridae_A	ANCESTRAL SPECIES	10	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c	ENSGT00950000182923.C.b
Amphiprion	ANCESTRAL SPECIES	5	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000016532	ENSGT00730000112225.a	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c	ENSGT00950000182923.C.b
Clown anemonefish	MODERN SPECIES	790							GORASP1 (ENSAOCG00000020500)	ENSAOCG00000020564	csrnp1b (ENSAOCG00000020582)	ENSAOCG00000020610	slc22a13b (ENSAOCG00000020677)	slc22a13b (ENSAOCG00000002232)	ENSAOCG00000020845	ARVCF (ENSAOCG00000020856)	BMP10 (ENSAOCG00000020890)	smad4a (ENSAOCG00000020944) ##22	rfx3 (ENSAOCG00000021007)	glis3 (ENSAOCG00000021022)	UNC5C (ENSAOCG00000021129)
Orange clownfish	MODERN SPECIES	7	rab14 (ENSAPEG00000014246)	ABL1 (ENSAPEG00000014156)	exosc2 (ENSAPEG00000014088)	RIC1 (ENSAPEG00000013948)	ERMP1 (ENSAPEG00000013820)	oaz1b (ENSAPEG00000013799)	UHRF2 (ENSAPEG00000013724)	KIAA2026 (ENSAPEG00000013675)	MLANA (ENSAPEG00000013661)	ENSAPEG00000013035	nup155 (ENSAPEG00000012883)	ENSAPEG00000012876	ENSAPEG00000012806	ARVCF (ENSAPEG00000012790)	BMP10 (ENSAPEG00000012780)	smad4a (ENSAPEG00000012744) ##22	rfx3 (ENSAPEG00000012681)	glis3 (ENSAPEG00000012665)	ENSAPEG00000012519	UNC5C (ENSAPEG00000012460)	bmpr1bb (ENSAPEG00000012440)	pdlim5b (ENSAPEG00000012414)	opn4xa (ENSAPEG00000012350)	gdnfa (ENSAPEG00000012340)	WDR70 (ENSAPEG00000012274)	FAM222A (ENSAPEG00000012249)	ENSAPEG00000012206	git2b (ENSAPEG00000012069)	ENSAPEG00000011934	srsf9 (ENSAPEG00000011908)	ENSAPEG00000011847
Spiny chromis	MODERN SPECIES	37	rab14 (ENSAPOG00000008641)	ABL1 (ENSAPOG00000008719)	exosc2 (ENSAPOG00000008861)	RIC1 (ENSAPOG00000009018)	ERMP1 (ENSAPOG00000009111)	oaz1b (ENSAPOG00000001045)	UHRF2 (ENSAPOG00000009269)	ENSAPOG00000009289	ENSAPOG00000009378	ENSAPOG00000010172	nup155 (ENSAPOG00000010371)	ENSAPOG00000010383	ENSAPOG00000010409	ARVCF (ENSAPOG00000010422)	BMP10 (ENSAPOG00000010442)	smad4a (ENSAPOG00000010474) ##22	rfx3 (ENSAPOG00000010514)	glis3 (ENSAPOG00000010551)	UNC5C (ENSAPOG00000010638)	bmpr1bb (ENSAPOG00000010718)	pdlim5b (ENSAPOG00000010737)	opn4xa (ENSAPOG00000010751)	apoda.1 (ENSAPOG00000010820)
Bicolor damselfish	MODERN SPECIES	757				ENSSPAG00000005273	ENSSPAG00000005261	oaz1b (ENSSPAG00000005232)	UHRF2 (ENSSPAG00000005157)	ENSSPAG00000005127	ENSSPAG00000005021	ENSSPAG00000005007	nup155 (ENSSPAG00000004883)	ENSSPAG00000004867	ENSSPAG00000004838	ARVCF (ENSSPAG00000004656)	BMP10 (ENSSPAG00000004631)	smad4a (ENSSPAG00000004597) ##22	rfx3 (ENSSPAG00000004491)	glis3 (ENSSPAG00000004451)
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c	ENSGT00950000182923.C.b
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c	ENSGT00950000182923.C.b
Eastern happy	MODERN SPECIES	19	exosc2 (ENSACLG00000013613)	RIC1 (ENSACLG00000013629)	ENSACLG00000013674	ERMP1 (ENSACLG00000013682)	oaz1b (ENSACLG00000013736)	UHRF2 (ENSACLG00000013761)	ENSACLG00000013855	MLANA (ENSACLG00000013936)	ENSACLG00000013956	ENSACLG00000014104	nup155 (ENSACLG00000014123)	ENSACLG00000014341	ENSACLG00000014347	ARVCF (ENSACLG00000014514)	BMP10 (ENSACLG00000014520)	smad4a (ENSACLG00000014529) ##22	rfx3 (ENSACLG00000014557)	glis3 (ENSACLG00000014654)	UNC5C (ENSACLG00000014816)	ENSACLG00000014947	bmpr1bb (ENSACLG00000014953)	pdlim5b (ENSACLG00000015010)	opn4xa (ENSACLG00000015094)	gdnfa (ENSACLG00000015113)	WDR70 (ENSACLG00000015123)	FAM222A (ENSACLG00000015267)	ENSACLG00000015281	git2b (ENSACLG00000015302)	ENSACLG00000015487	ENSACLG00000015650	srsf9 (ENSACLG00000015678)
Zebra mbuna	MODERN SPECIES	1110	ABL1 (ENSMZEG00005018744)	exosc2 (ENSMZEG00005018737)	RIC1 (ENSMZEG00005018724)	ERMP1 (ENSMZEG00005018708)	oaz1b (ENSMZEG00005018701)	UHRF2 (ENSMZEG00005018695)	KIAA2026 (ENSMZEG00005018687)	MLANA (ENSMZEG00005018684)	ENSMZEG00005018663	ENSMZEG00005018651	nup155 (ENSMZEG00005018634)	ENSMZEG00005018627	ENSMZEG00005018625	ARVCF (ENSMZEG00005018621)	BMP10 (ENSMZEG00005018620)	smad4a (ENSMZEG00005018613) ##22	rfx3 (ENSMZEG00005018598)	glis3 (ENSMZEG00005018592)	UNC5C (ENSMZEG00005018566)	bmpr1bb (ENSMZEG00005018554)	pdlim5b (ENSMZEG00005018544)	opn4xa (ENSMZEG00005018537)	ENSMZEG00005018533	ENSMZEG00005018511	ENSMZEG00005018505	gdnfa (ENSMZEG00005018503)	WDR70 (ENSMZEG00005018480)	FAM222A (ENSMZEG00005018465)	ENSMZEG00005018458	git2b (ENSMZEG00005018442)	ENSMZEG00005018428
P. nyererei	MODERN SPECIES	358	RAB14 (ENSPNYG00000007314)	ABL1 (ENSPNYG00000007350)	exosc2 (ENSPNYG00000007383)	RIC1 (ENSPNYG00000007422)	ERMP1 (ENSPNYG00000007487)	oaz1b (ENSPNYG00000007528)	UHRF2 (ENSPNYG00000007607)	ENSPNYG00000007687	ENSPNYG00000007727	ENSPNYG00000007841	nup155 (ENSPNYG00000007870)	ENSPNYG00000008044	ENSPNYG00000008059	ARVCF (ENSPNYG00000008095)	BMP10 (ENSPNYG00000008119)	smad4a (ENSPNYG00000008130) ##22	rfx3 (ENSPNYG00000008150)	glis3 (ENSPNYG00000008203)	UNC5C (ENSPNYG00000008247)	bmpr1bb (ENSPNYG00000008280)	pdlim5b (ENSPNYG00000008318)	opn4xa (ENSPNYG00000008343)	gdnfa (ENSPNYG00000008369)	WDR70 (ENSPNYG00000008394)	ENSPNYG00000008462	FAM222A (ENSPNYG00000008477)	ENSPNYG00000008489	git2b (ENSPNYG00000008528)	ENSPNYG00000008582	srsf9 (ENSPNYG00000008644)	ENSPNYG00000008675
Burton s mouthbrooder	MODERN SPECIES	584	RAB14 (ENSHBUG00000022562)	ABL1 (ENSHBUG00000022516)	exosc2 (ENSHBUG00000022437)	RIC1 (ENSHBUG00000022396)	ERMP1 (ENSHBUG00000022308)	oaz1b (ENSHBUG00000022196)	UHRF2 (ENSHBUG00000022178)	ENSHBUG00000022069	ENSHBUG00000022058	ENSHBUG00000021949	nup155 (ENSHBUG00000021934)	ENSHBUG00000021735	ENSHBUG00000021723	ARVCF (ENSHBUG00000021682)	BMP10 (ENSHBUG00000021667)	smad4a (ENSHBUG00000021658) ##22	rfx3 (ENSHBUG00000021638)	glis3 (ENSHBUG00000021547)	UNC5C (ENSHBUG00000021530)	bmpr1bb (ENSHBUG00000021405)	pdlim5b (ENSHBUG00000021350)	opn4xa (ENSHBUG00000021264)
Lyretail cichlid	MODERN SPECIES	304	RAB14 (ENSNBRG00000005542)	ABL1 (ENSNBRG00000005494)	exosc2 (ENSNBRG00000005453)	RIC1 (ENSNBRG00000005373)	ERMP1 (ENSNBRG00000005304)	oaz1b (ENSNBRG00000005283)	UHRF2 (ENSNBRG00000005231)	ENSNBRG00000005203	ENSNBRG00000004956	ENSNBRG00000004934	nup155 (ENSNBRG00000004838)	ENSNBRG00000004824	ENSNBRG00000004787	ARVCF (ENSNBRG00000004752)	BMP10 (ENSNBRG00000004734)	smad4a (ENSNBRG00000004691) ##22	rfx3 (ENSNBRG00000004632)	glis3 (ENSNBRG00000004595)	UNC5C (ENSNBRG00000004521)	bmpr1bb (ENSNBRG00000004491)	pdlim5b (ENSNBRG00000004476)	opn4xa (ENSNBRG00000004370)	gdnfa (ENSNBRG00000004334)	WDR70 (ENSNBRG00000004265)	ENSNBRG00000004113	FAM222A (ENSNBRG00000004059)	ENSNBRG00000004040	git2b (ENSNBRG00000003985)	ENSNBRG00000003914	srsf9 (ENSNBRG00000003888)	ENSNBRG00000003828
Nile tilapia	MODERN SPECIES	19	ddx54 (ENSONIG00000038587)	rab14 (ENSONIG00000036893)	ABL1 (ENSONIG00000014093)	exosc2 (ENSONIG00000014086)	RIC1 (ENSONIG00000014080)	ERMP1 (ENSONIG00000014077)	oaz1b (ENSONIG00000014076)	UHRF2 (ENSONIG00000014061)	ENSONIG00000014060	ENSONIG00000014053	nup155 (ENSONIG00000014046)	ENSONIG00000020400	ENSONIG00000014045	ARVCF (ENSONIG00000014044)	BMP10 (ENSONIG00000039707)	smad4a (ENSONIG00000014036) ##22	rfx3 (ENSONIG00000014034)	glis3 (ENSONIG00000014033)	UNC5C (ENSONIG00000014022)	bmpr1bb (ENSONIG00000014017)	pdlim5b (ENSONIG00000014011)	opn4xa (ENSONIG00000014009)	gdnfa (ENSONIG00000031992)	WDR70 (ENSONIG00000014001)	FAM222A (ENSONIG00000040639)	ENSONIG00000041587	git2b (ENSONIG00000013982)	srsf9 (ENSONIG00000013974)	ENSONIG00000013976	ENSONIG00000013969	GAL3ST1 (ENSONIG00000013968)
Midas cichlid	MODERN SPECIES	75	ABL1 (ENSACIG00000019070)	exosc2 (ENSACIG00000019054)	RIC1 (ENSACIG00000019017)	ERMP1 (ENSACIG00000018992)	oaz1b (ENSACIG00000018980)	UHRF2 (ENSACIG00000018947)	ENSACIG00000018906	ENSACIG00000018846	ENSACIG00000018837	nup155 (ENSACIG00000018799)	ENSACIG00000018793	ENSACIG00000018765	ARVCF (ENSACIG00000018628)	BMP10 (ENSACIG00000018609)	ENSACIG00000018604	smad4a (ENSACIG00000018584) ##22	rfx3 (ENSACIG00000018552)	glis3 (ENSACIG00000018517)	UNC5C (ENSACIG00000018481)	bmpr1bb (ENSACIG00000018459)	pdlim5b (ENSACIG00000018322)	opn4xa (ENSACIG00000018281)
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c.c	ENSGT00950000182923.C.b
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00390000010427.c.s.a	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c.c	ENSGT00950000182923.C.b
Indian medaka	MODERN SPECIES	30	exosc2 (ENSOMEG00000003533)	RIC1 (ENSOMEG00000003478)	ERMP1 (ENSOMEG00000003427)	oaz1b (ENSOMEG00000003395)	UHRF2 (ENSOMEG00000003365)	ENSOMEG00000003312	ENSOMEG00000003288	ENSOMEG00000003269	ENSOMEG00000003253	nup155 (ENSOMEG00000003206)	ENSOMEG00000003115	ENSOMEG00000000956	ARVCF (ENSOMEG00000003081)	rfx3 (ENSOMEG00000003021)	BMP10 (ENSOMEG00000002990)	smad4a (ENSOMEG00000002982) ##22	glis3 (ENSOMEG00000002935)	UNC5C (ENSOMEG00000002886)	bmpr1bb (ENSOMEG00000002834)	pdlim5b (ENSOMEG00000000058)	opn4xa (ENSOMEG00000002798)	gdnfa (ENSOMEG00000002782)	WDR70 (ENSOMEG00000002766)	FAM222A (ENSOMEG00000002728)	ENSOMEG00000002721	git2b (ENSOMEG00000002699)	ENSOMEG00000002630	srsf9 (ENSOMEG00000002601)	ENSOMEG00000002593	GAL3ST1 (ENSOMEG00000002547)	uqcr10 (ENSOMEG00000002543)
Javanese ricefish	MODERN SPECIES	3	tbx3a (ENSOJAG00000006828)	tbx5a (ENSOJAG00000006790)	ddx54 (ENSOJAG00000006259)	rab14 (ENSOJAG00000006196)	ABL1 (ENSOJAG00000006145)	exosc2 (ENSOJAG00000005986)	RIC1 (ENSOJAG00000005894)	ERMP1 (ENSOJAG00000005824)	oaz1b (ENSOJAG00000005802)	UHRF2 (ENSOJAG00000005315)	KIAA2026 (ENSOJAG00000005246)	MLANA (ENSOJAG00000005239)	ENSOJAG00000004961	ENSOJAG00000004903	BMP10 (ENSOJAG00000004699)	smad4a (ENSOJAG00000004544) ##22	rfx3 (ENSOJAG00000004283)	glis3 (ENSOJAG00000004227)	UNC5C (ENSOJAG00000002794)	bmpr1bb (ENSOJAG00000002422)	pdlim5b (ENSOJAG00000002386)	opn4xa (ENSOJAG00000002350)	gdnfa (ENSOJAG00000002333)	WDR70 (ENSOJAG00000002290)	FAM222A (ENSOJAG00000002267)	ENSOJAG00000002247	git2b (ENSOJAG00000001875)	ENSOJAG00000020589	srsf9 (ENSOJAG00000020545)	ENSOJAG00000020522	GAL3ST1 (ENSOJAG00000020515)
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c.c	ENSGT00950000182923.C.b
Chinese medaka	MODERN SPECIES	489	tbx3a (ENSOSIG00000019228)	tbx5a (ENSOSIG00000019232)	ddx54 (ENSOSIG00000000192)	rab14 (ENSOSIG00000000271)	ABL1 (ENSOSIG00000000316)	exosc2 (ENSOSIG00000000805)	RIC1 (ENSOSIG00000000883)	ERMP1 (ENSOSIG00000002812)	oaz1b (ENSOSIG00000002866)	UHRF2 (ENSOSIG00000002953)	ENSOSIG00000003071	ENSOSIG00000003125	ENSOSIG00000005494	ENSOSIG00000005495	BMP10 (ENSOSIG00000005497)	smad4a (ENSOSIG00000005505) ##22	rfx3 (ENSOSIG00000005600)	glis3 (ENSOSIG00000006026)
Japanese Medaka HdrR	MODERN SPECIES	3	rab14 (ENSORLG00000007406)	ABL1 (ENSORLG00000007426)	exosc2 (ENSORLG00000007443)	RIC1 (ENSORLG00000007468)	ERMP1 (ENSORLG00000007495)	UHRF2 (ENSORLG00000007546)	oaz1b (ENSORLG00000007502)	ENSORLG00000026627	MLANA (ENSORLG00000007559)	ENSORLG00000007606	nup155 (ENSORLG00000007635)	ENSORLG00000028358	ENSORLG00000007651	ARVCF (ENSORLG00000007658)	ENSORLG00000022833	smad4a (ENSORLG00000007703) ##22	rfx3 (ENSORLG00000007747)	glis3 (ENSORLG00000007755)	UNC5C (ENSORLG00000007815)	bmpr1bb (ENSORLG00000007833)	pdlim5b (ENSORLG00000007854)	opn4xa (ENSORLG00000007864)	gdnfa (ENSORLG00000007873)	WDR70 (ENSORLG00000007897)	ENSORLG00000007923	ENSORLG00000007931	git2b (ENSORLG00000008075)	ENSORLG00000008100	srsf9 (ENSORLG00000023709)	ENSORLG00000008119	ENSORLG00000030067
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Aplocheiloidei	ANCESTRAL SPECIES	5	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Mangrove rivulus	MODERN SPECIES	279						PAX8 (ENSKMAG00000009439)	ENSKMAG00000009513	ENSKMAG00000009563	SAPCD2 (ENSKMAG00000009594)	tmem141 (ENSKMAG00000009630)	nup155 (ENSKMAG00000009667)	ENSKMAG00000009797	ENSKMAG00000009807	ARVCF (ENSKMAG00000009822)	BMP10 (ENSKMAG00000009843)	smad4a (ENSKMAG00000009868) ##22	rfx3 (ENSKMAG00000009937)	glis3 (ENSKMAG00000010008)	UNC5C (ENSKMAG00000010058)	bmpr1bb (ENSKMAG00000010188)	pdlim5b (ENSKMAG00000010235)	opn4xa (ENSKMAG00000010258)
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015019036	KIAA1432 (ENSNFUG00015018957)	ERMP1 (ENSNFUG00015018927)	ENSNFUG00015018925	oaz1b (ENSNFUG00015018922)	UHRF2 (ENSNFUG00015016249)	ENSNFUG00015016134	ENSNFUG00015016114	ENSNFUG00015016110	ENSNFUG00015015999	nup155 (ENSNFUG00015015876)	ENSNFUG00015015867	ENSNFUG00015015853	ARVCFA (ENSNFUG00015015668)	BMP10 (ENSNFUG00015015646)	smad4a (ENSNFUG00015015586) ##22	RFX3 (ENSNFUG00015015183)	ENSNFUG00015015164	glis3 (ENSNFUG00015015108)	ENSNFUG00015015101	UNC5C (ENSNFUG00015010709)	bmpr1bb (ENSNFUG00015010344)	ENSNFUG00015010321	ENSNFUG00015010313	opn4xa (ENSNFUG00015010269)	GDNFA (ENSNFUG00015010259)	WDR70 (ENSNFUG00015010238)	ENSNFUG00015010214	FAM222A (ENSNFUG00015010202)	GLTPB (ENSNFUG00015010193)	git2b (ENSNFUG00015009948)
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
NAME_6	ANCESTRAL SPECIES	12	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b.d	ENSGT00940000155919.b.b.c	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839
Sailfin molly	MODERN SPECIES	103	RAB14 (ENSPLAG00000004551)	ABL1 (ENSPLAG00000004579)	exosc2 (ENSPLAG00000004605)	RIC1 (ENSPLAG00000004669)	ERMP1 (ENSPLAG00000004733)	oaz1b (ENSPLAG00000004747)	UHRF2 (ENSPLAG00000004783)	ENSPLAG00000004795	ENSPLAG00000004867	ENSPLAG00000004889	nup155 (ENSPLAG00000004934)	ENSPLAG00000004947	ENSPLAG00000004969	ARVCF (ENSPLAG00000005050)	BMP10 (ENSPLAG00000005066)	smad4a (ENSPLAG00000005111) ##22	rfx3 (ENSPLAG00000005171)	glis3 (ENSPLAG00000005185)
Amazon molly	MODERN SPECIES	258	RAB14 (ENSPFOG00000019821)	ABL1 (ENSPFOG00000019820)	exosc2 (ENSPFOG00000019819)	RIC1 (ENSPFOG00000019818)	ERMP1 (ENSPFOG00000019817)	oaz1b (ENSPFOG00000019816)	UHRF2 (ENSPFOG00000019815)	KIAA2026 (ENSPFOG00000019814)	MLANA (ENSPFOG00000019813)	ENSPFOG00000019812	nup155 (ENSPFOG00000019811)	ENSPFOG00000019953	ENSPFOG00000019810	ARVCF (ENSPFOG00000019809)	BMP10 (ENSPFOG00000019808)	smad4a (ENSPFOG00000019807) ##22	rfx3 (ENSPFOG00000019806)	glis3 (ENSPFOG00000019805)	UNC5C (ENSPFOG00000019804)	bmpr1bb (ENSPFOG00000019803)	bmpr1bb (ENSPFOG00000019802)	pdlim5b (ENSPFOG00000019801)	opn4xa (ENSPFOG00000019800)	gdnfa (ENSPFOG00000019799)	WDR70 (ENSPFOG00000019798)	ENSPFOG00000019797	FAM222A (ENSPFOG00000019796)	ENSPFOG00000019795	git2b (ENSPFOG00000019794)	ENSPFOG00000019793	srsf9 (ENSPFOG00000019792)
Guppy	MODERN SPECIES	442	ABL1 (ENSPREG00000014327)	exosc2 (ENSPREG00000014306)	RIC1 (ENSPREG00000014275)	ERMP1 (ENSPREG00000014257)	oaz1b (ENSPREG00000014246)	ENSPREG00000014220	ENSPREG00000014165	ENSPREG00000014082	ENSPREG00000014052	ENSPREG00000014046	nup155 (ENSPREG00000013997)	ENSPREG00000013943	ENSPREG00000013920	ARVCF (ENSPREG00000013892)	BMP10 (ENSPREG00000013876)	smad4a (ENSPREG00000013851) ##22	rfx3 (ENSPREG00000013770)	glis3 (ENSPREG00000013743)	UNC5C (ENSPREG00000013711)	bmpr1bb (ENSPREG00000013685)	pdlim5b (ENSPREG00000013658)	opn4xa (ENSPREG00000013581)	gdnfa (ENSPREG00000013564)	WDR70 (ENSPREG00000013539)	ENSPREG00000013485	FAM222A (ENSPREG00000013472)	ENSPREG00000013457	git2b (ENSPREG00000013392)	ENSPREG00000013232	srsf9 (ENSPREG00000013165)	ENSPREG00000013032
Platyfish	MODERN SPECIES	22	ABL1 (ENSXMAG00000027567)	exosc2 (ENSXMAG00000005265)	RIC1 (ENSXMAG00000005243)	ERMP1 (ENSXMAG00000005226)	oaz1b (ENSXMAG00000028044)	UHRF2 (ENSXMAG00000005174)	ENSXMAG00000005170	ENSXMAG00000005171	ENSXMAG00000005119	ENSXMAG00000030005	nup155 (ENSXMAG00000005080)	ENSXMAG00000020021	ENSXMAG00000025194	ARVCF (ENSXMAG00000005070)	BMP10 (ENSXMAG00000005068)	smad4a (ENSXMAG00000005051) ##22	rfx3 (ENSXMAG00000005015)	glis3 (ENSXMAG00000005013)	UNC5C (ENSXMAG00000001669)	bmpr1bb (ENSXMAG00000001635)	pdlim5b (ENSXMAG00000001628)	opn4xa (ENSXMAG00000001613)	gdnfa (ENSXMAG00000021439)	WDR70 (ENSXMAG00000001567)	FAM222A (ENSXMAG00000001561)	ENSXMAG00000001549	git2b (ENSXMAG00000001494)	ENSXMAG00000001453	srsf9 (ENSXMAG00000001438)	ENSXMAG00000001415	GAL3ST1 (ENSXMAG00000001414)
NAME_4	ANCESTRAL SPECIES		ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Sheepshead minnow	MODERN SPECIES	330	ABL1 (ENSCVAG00000022319)	exosc2 (ENSCVAG00000022260)	RIC1 (ENSCVAG00000022235)	ERMP1 (ENSCVAG00000022152)	ENSCVAG00000022105	UHRF2 (ENSCVAG00000022094)	ENSCVAG00000022010	MLANA (ENSCVAG00000021976)	ENSCVAG00000021971	ENSCVAG00000021961	nup155 (ENSCVAG00000021951)	ENSCVAG00000021874	ENSCVAG00000021863	ENSCVAG00000021850	BMP10 (ENSCVAG00000021830)	smad4a (ENSCVAG00000021820) ##22	rfx3 (ENSCVAG00000021772)	ENSCVAG00000021725	UNC5C (ENSCVAG00000021696)	bmpr1bb (ENSCVAG00000021623)
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	217																ENSFHEG00000014926 ##22
Mummichog	MODERN SPECIES	2260	RAB14 (ENSFHEG00000018450)	ABL1 (ENSFHEG00000018524)	exosc2 (ENSFHEG00000018571)	RIC1 (ENSFHEG00000018706)	ERMP1 (ENSFHEG00000018835)	oaz1b (ENSFHEG00000018867)	UHRF2 (ENSFHEG00000018882)	ENSFHEG00000018962	ENSFHEG00000018991	ENSFHEG00000019424	nup155 (ENSFHEG00000019546)	ENSFHEG00000019556	ENSFHEG00000019571	ARVCF (ENSFHEG00000019614)	BMP10 (ENSFHEG00000019628)	smad4a (ENSFHEG00000020053) ##22	rfx3 (ENSFHEG00000020129)	glis3 (ENSFHEG00000020137)	UNC5C (ENSFHEG00000020244)	ENSFHEG00000020268	bmpr1bb (ENSFHEG00000020318)	pdlim5b (ENSFHEG00000020331)	opn4xa (ENSFHEG00000020381)	gdnfa (ENSFHEG00000020391)	WDR70 (ENSFHEG00000020484)	ENSFHEG00000020660	FAM222A (ENSFHEG00000020669)	ENSFHEG00000020695	git2b (ENSFHEG00000020748)	ENSFHEG00000020803	srsf9 (ENSFHEG00000020851)
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Zig-zag eel	MODERN SPECIES	3	tbx5a (ENSMAMG00000012799)	ddx54 (ENSMAMG00000012784)	ENSMAMG00000012750	ENSMAMG00000012709	ENSMAMG00000012627	ENSMAMG00000012491	ENSMAMG00000012466	ENSMAMG00000012458	ENSMAMG00000012395	ENSMAMG00000012373	ENSMAMG00000012172	ENSMAMG00000012098	ENSMAMG00000028079	ENSMAMG00000012047	ENSMAMG00000012033	smad4a (ENSMAMG00000011989) ##22	rfx3 (ENSMAMG00000011935)	glis3 (ENSMAMG00000011917)	UNC5C (ENSMAMG00000011881)	bmpr1bb (ENSMAMG00000011816)	pdlim5b (ENSMAMG00000011762)	opn4xa (ENSMAMG00000011749)	gdnfa (ENSMAMG00000011729)	ENSMAMG00000011715	ENSMAMG00000027403	ENSMAMG00000011709	ENSMAMG00000026088	ENSMAMG00000011640	ENSMAMG00000011599	ENSMAMG00000011581	ENSMAMG00000011538
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Climbing perch	MODERN SPECIES	3	tbx5a (ENSATEG00000018495)	ddx54 (ENSATEG00000018529)	ENSATEG00000018600	ENSATEG00000018625	exosc2 (ENSATEG00000018680)	ENSATEG00000018719	ENSATEG00000018816	ENSATEG00000018879	ENSATEG00000018932	ENSATEG00000018999	ENSATEG00000019067	ENSATEG00000019247	ENSATEG00000019385	ENSATEG00000019396	ENSATEG00000019411	smad4a (ENSATEG00000019422) ##22	rfx3 (ENSATEG00000019466)	glis3 (ENSATEG00000019518)	UNC5C (ENSATEG00000019548)	bmpr1bb (ENSATEG00000019663)	pdlim5b (ENSATEG00000019707)	opn4xa (ENSATEG00000019730)	gdnfa (ENSATEG00000025610)	ENSATEG00000019788	ENSATEG00000019843	ENSATEG00000019850	ENSATEG00000019872	ENSATEG00000019936	ENSATEG00000019984	ENSATEG00000020011	ENSATEG00000020049
Siamese fighting fish	MODERN SPECIES	3	ddx54 (ENSBSLG00000013310)	rab14 (ENSBSLG00000012526)	ABL1 (ENSBSLG00000012314)	exosc2 (ENSBSLG00000012167)	RIC1 (ENSBSLG00000011928)	ERMP1 (ENSBSLG00000011523)	oaz1b (ENSBSLG00000011504)	UHRF2 (ENSBSLG00000010819)	ENSBSLG00000010326	ENSBSLG00000010301	nup155 (ENSBSLG00000010054)	ENSBSLG00000010016	ENSBSLG00000010003	ARVCF (ENSBSLG00000009733)	BMP10 (ENSBSLG00000009573)	smad4a (ENSBSLG00000009477) ##22	rfx3 (ENSBSLG00000009302)	glis3 (ENSBSLG00000009272)	UNC5C (ENSBSLG00000007167)	bmpr1bb (ENSBSLG00000006648)	pdlim5b (ENSBSLG00000006360)	opn4xa (ENSBSLG00000005912)	gdnfa (ENSBSLG00000005905)	WDR70 (ENSBSLG00000005018)	ENSBSLG00000004775	FAM222A (ENSBSLG00000004390)	git2b (ENSBSLG00000004162)	ENSBSLG00000004087	srsf9 (ENSBSLG00000004081)	PRODH (ENSBSLG00000003837)	GAL3ST1 (ENSBSLG00000003713)
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Barramundi perch	MODERN SPECIES	269	ddx54 (ENSLCAG00010005700)	rab14 (ENSLCAG00010005704)	ABL1 (ENSLCAG00010005729)	exosc2 (ENSLCAG00010005872)	RIC1 (ENSLCAG00010005942)	ERMP1 (ENSLCAG00010006304)	ENSLCAG00010006334	oaz1b (ENSLCAG00010006337)	UHRF2 (ENSLCAG00010006354)	ENSLCAG00010006402	ENSLCAG00010006412	nup155 (ENSLCAG00010006449)	ENSLCAG00010006499	ARVCF (ENSLCAG00010006506)	BMP10 (ENSLCAG00010006514)	smad4a (ENSLCAG00010006525) ##22	rfx3 (ENSLCAG00010006561)	glis3 (ENSLCAG00010006586)	UNC5C (ENSLCAG00010006614)
Seriola	ANCESTRAL SPECIES	19	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Greater amberjack	MODERN SPECIES	216	rab14 (ENSSDUG00000004551)	ABL1 (ENSSDUG00000004590)	exosc2 (ENSSDUG00000004634)	RIC1 (ENSSDUG00000004672)	ERMP1 (ENSSDUG00000004729)	oaz1b (ENSSDUG00000004803)	UHRF2 (ENSSDUG00000004825)	ENSSDUG00000004895	ENSSDUG00000004924	ENSSDUG00000005001	nup155 (ENSSDUG00000005030)	ENSSDUG00000005179	ENSSDUG00000005185	ARVCF (ENSSDUG00000005215)	BMP10 (ENSSDUG00000005285)	smad4a (ENSSDUG00000005304) ##22	rfx3 (ENSSDUG00000005356)	glis3 (ENSSDUG00000005433)	UNC5C (ENSSDUG00000005477)	bmpr1bb (ENSSDUG00000005566)
Yellowtail amberjack	MODERN SPECIES	2993	rab14 (ENSSLDG00000010503)	ABL1 (ENSSLDG00000010560)	exosc2 (ENSSLDG00000010616)	RIC1 (ENSSLDG00000010673)	ERMP1 (ENSSLDG00000010736)	oaz1b (ENSSLDG00000010778)	UHRF2 (ENSSLDG00000010802)	ENSSLDG00000010851	ENSSLDG00000010900	ENSSLDG00000010985	nup155 (ENSSLDG00000011031)	ENSSLDG00000011179	ENSSLDG00000011205	ARVCF (ENSSLDG00000011280)	BMP10 (ENSSLDG00000011329)	smad4a (ENSSLDG00000011357) ##22	rfx3 (ENSSLDG00000011445)	glis3 (ENSSLDG00000011489)	UNC5C (ENSSLDG00000011559)	bmpr1bb (ENSSLDG00000011716)	pdlim5b (ENSSLDG00000011763)	opn4xa (ENSSLDG00000011793)	gdnfa (ENSSLDG00000011810)	WDR70 (ENSSLDG00000011844)	ENSSLDG00000011896	FAM222A (ENSSLDG00000012007)	ENSSLDG00000012023	git2b (ENSSLDG00000012072)	ENSSLDG00000012195	srsf9 (ENSSLDG00000012305)	ENSSLDG00000012346
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Tongue sole	MODERN SPECIES	5	RIC1 (ENSCSEG00000016560)	ERMP1 (ENSCSEG00000016609)	oaz1b (ENSCSEG00000016651)	oaz1b (ENSCSEG00000016656)	ENSCSEG00000016668	ENSCSEG00000016706	MLANA (ENSCSEG00000016732)	ENSCSEG00000016736	ENSCSEG00000016739	ENSCSEG00000016748	nup155 (ENSCSEG00000016754)	ENSCSEG00000016790	ENSCSEG00000016795	ARVCF (ENSCSEG00000016810)	BMP10 (ENSCSEG00000016823)	smad4a (ENSCSEG00000016829) ##22	rfx3 (ENSCSEG00000016846)	glis3 (ENSCSEG00000016889)	UNC5C (ENSCSEG00000016909)	bmpr1bb (ENSCSEG00000016981)	ASTN2 (ENSCSEG00000017190)	trim32 (ENSCSEG00000017205)	ENSCSEG00000017207	brinp1 (ENSCSEG00000017221)	ENSCSEG00000017255	ak1 (ENSCSEG00000017279)	ENSCSEG00000017290	ENSCSEG00000017292	LHX3 (ENSCSEG00000017295)	NACC2 (ENSCSEG00000017316)	ENSCSEG00000017366
Turbot	MODERN SPECIES	7	ddx54 (ENSSMAG00000003210)	ENSSMAG00000003166	ENSSMAG00000003144	exosc2 (ENSSMAG00000003112)	ENSSMAG00000003043	ENSSMAG00000003001	ENSSMAG00000002990	ENSSMAG00000002939	ENSSMAG00000002926	ENSSMAG00000002824	ENSSMAG00000002770	ENSSMAG00000002759	ENSSMAG00000002742	ENSSMAG00000002728	ENSSMAG00000002714	smad4a (ENSSMAG00000002673) ##22	rfx3 (ENSSMAG00000002591)	glis3 (ENSSMAG00000002564)	UNC5C (ENSSMAG00000002408)	bmpr1bb (ENSSMAG00000002364)	pdlim5b (ENSSMAG00000002349)	opn4xa (ENSSMAG00000002337)	gdnfa (ENSSMAG00000002331)	ENSSMAG00000002311	ENSSMAG00000002249	ENSSMAG00000002233	ENSSMAG00000002120	ENSSMAG00000002054	ENSSMAG00000002039	ENSSMAG00000001963	ENSSMAG00000001941
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532.l	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Fugu	DUPLICATION
Fugu	MODERN SPECIES	18	ABL1 (ENSTRUG00000014808)	exosc2 (ENSTRUG00000022436)	RIC1 (ENSTRUG00000014728)	ERMP1 (ENSTRUG00000014672)	oaz1b (ENSTRUG00000014651)	ENSTRUG00000032035	UHRF2 (ENSTRUG00000014575)	ENSTRUG00000023033	ENSTRUG00000022114	ENSTRUG00000014488	nup155 (ENSTRUG00000014297)	ENSTRUG00000020119	ENSTRUG00000021607	ARVCF (ENSTRUG00000014229)	BMP10 (ENSTRUG00000014185)	smad4a (ENSTRUG00000014045) ##22	glis3 (ENSTRUG00000030406)	UNC5C (ENSTRUG00000013878)	ENSTRUG00000029487	ENSTRUG00000028974	BMP10 (ENSTRUG00000027837)	smad4a (ENSTRUG00000032526) ##22	glis3 (ENSTRUG00000019777)	bmpr1bb (ENSTRUG00000013761)	pdlim5b (ENSTRUG00000013562)	opn4xa (ENSTRUG00000013541)	gdnfa (ENSTRUG00000013519)	WDR70 (ENSTRUG00000013416)	ENSTRUG00000031950	git2b (ENSTRUG00000013096)	ENSTRUG00000012834
Fugu	MODERN SPECIES	18	UHRF2 (ENSTRUG00000014575)	ENSTRUG00000023033	ENSTRUG00000022114	ENSTRUG00000014488	nup155 (ENSTRUG00000014297)	ENSTRUG00000020119	ENSTRUG00000021607	ARVCF (ENSTRUG00000014229)	BMP10 (ENSTRUG00000014185)	smad4a (ENSTRUG00000014045) ##22	glis3 (ENSTRUG00000030406)	UNC5C (ENSTRUG00000013878)	ENSTRUG00000029487	ENSTRUG00000028974	BMP10 (ENSTRUG00000027837)	smad4a (ENSTRUG00000032526) ##22	glis3 (ENSTRUG00000019777)	bmpr1bb (ENSTRUG00000013761)	pdlim5b (ENSTRUG00000013562)	opn4xa (ENSTRUG00000013541)	gdnfa (ENSTRUG00000013519)	WDR70 (ENSTRUG00000013416)	ENSTRUG00000031950	git2b (ENSTRUG00000013096)	ENSTRUG00000012834	srsf9 (ENSTRUG00000012723)	ENSTRUG00000012588	GAL3ST1 (ENSTRUG00000012538)	uqcr10 (ENSTRUG00000012529)	zmat5 (ENSTRUG00000012501)	CABP7 (ENSTRUG00000012475)
Tetraodon	MODERN SPECIES	19	tbx5a (ENSTNIG00000009036)	ddx54 (ENSTNIG00000009037)	ENSTNIG00000009038	rab14 (ENSTNIG00000009039)	ABL1 (ENSTNIG00000009040)	RIC1 (ENSTNIG00000009041)	ERMP1 (ENSTNIG00000009042)	oaz1b (ENSTNIG00000001544)	ENSTNIG00000009043	ENSTNIG00000009044	ENSTNIG00000009045	nup155 (ENSTNIG00000009046)	ENSTNIG00000009047	ARVCF (ENSTNIG00000009048)	BMP10 (ENSTNIG00000009049)	smad4a (ENSTNIG00000009050) ##22	rfx3 (ENSTNIG00000009051)	ENSTNIG00000009052	UNC5C (ENSTNIG00000009053)	bmpr1bb (ENSTNIG00000009054)	pdlim5b (ENSTNIG00000009055)	opn4xa (ENSTNIG00000009056)	gdnfa (ENSTNIG00000009057)	WDR70 (ENSTNIG00000009058)	ENSTNIG00000009059	FAM222A (ENSTNIG00000009060)	ENSTNIG00000009061	git2b (ENSTNIG00000009062)	ENSTNIG00000009063	srsf9 (ENSTNIG00000000697)	PRODH (ENSTNIG00000009064)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00940000180190
Ballan wrasse	MODERN SPECIES	28	ABL1 (ENSLBEG00000019337)	exosc2 (ENSLBEG00000019269)	RIC1 (ENSLBEG00000019176)	ERMP1 (ENSLBEG00000019097)	oaz1b (ENSLBEG00000019066)	UHRF2 (ENSLBEG00000018956)	ENSLBEG00000018934	ENSLBEG00000018855	ENSLBEG00000018699	ENSLBEG00000018683	nup155 (ENSLBEG00000018561)	ENSLBEG00000018492	ENSLBEG00000018432	ARVCF (ENSLBEG00000018360)	BMP10 (ENSLBEG00000018326)	smad4a (ENSLBEG00000018291) ##22	rfx3 (ENSLBEG00000018260)	glis3 (ENSLBEG00000018235)	UNC5C (ENSLBEG00000018140)	bmpr1bb (ENSLBEG00000018060)	pdlim5b (ENSLBEG00000017996)	opn4xa (ENSLBEG00000017961)	gdnfa (ENSLBEG00000017940)	WDR70 (ENSLBEG00000017858)	ENSLBEG00000017710	ENSLBEG00000017669	FAM222A (ENSLBEG00000017651)	ENSLBEG00000017619	git2b (ENSLBEG00000017550)	ENSLBEG00000017472	srsf9 (ENSLBEG00000017430)
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
European seabass	MODERN SPECIES	9	ddx54 (ENSDLAG00005007003)	ENSDLAG00005008202	ENSDLAG00005008230	exosc2 (ENSDLAG00005008514)	ENSDLAG00005008555	ENSDLAG00005009689	ENSDLAG00005009941	ENSDLAG00005009969	ENSDLAG00005011109	ENSDLAG00005011169	ENSDLAG00005011338	ENSDLAG00005011767	ENSDLAG00005011755	ENSDLAG00005011789	ENSDLAG00005012213	smad4a (ENSDLAG00005032169) ##22	rfx3 (ENSDLAG00005012256)	glis3 (ENSDLAG00005012865)	UNC5C (ENSDLAG00005012944)	bmpr1bb (ENSDLAG00005015061)	pdlim5b (ENSDLAG00005027877)	opn4xa (ENSDLAG00005015716)	gdnfa (ENSDLAG00005029352)	ENSDLAG00005015770	ENSDLAG00005016044	ENSDLAG00005015748	ENSDLAG00005016212	ENSDLAG00005021027	ENSDLAG00005021162	ENSDLAG00005021183	zmat5 (ENSDLAG00005026922)
Large yellow croaker	MODERN SPECIES	4	rab14 (ENSLCRG00005011551)	ABL1 (ENSLCRG00005011496)	exosc2 (ENSLCRG00005011489)	RIC1 (ENSLCRG00005011482)	ERMP1 (ENSLCRG00005011455)	oaz1b (ENSLCRG00005011446)	UHRF2 (ENSLCRG00005011361)	KIAA2026 (ENSLCRG00005011343)	MLANA (ENSLCRG00005011335)	ENSLCRG00005011233	nup155 (ENSLCRG00005011128)	ENSLCRG00005011119	ENSLCRG00005011118	ARVCF (ENSLCRG00005011106)	BMP10 (ENSLCRG00005011104)	smad4a (ENSLCRG00005011093) ##22	rfx3 (ENSLCRG00005009549)	glis3 (ENSLCRG00005009538)	UNC5C (ENSLCRG00005005820)	bmpr1bb (ENSLCRG00005005416)	pdlim5b (ENSLCRG00005005408)	opn4xa (ENSLCRG00005005397)	gdnfa (ENSLCRG00005005391)	WDR70 (ENSLCRG00005004409)	ENSLCRG00005004383	FAM222A (ENSLCRG00005004373)	ENSLCRG00005004370	git2b (ENSLCRG00005004331)	ENSLCRG00005004314	srsf9 (ENSLCRG00005004306)	ENSLCRG00005003606
Gilthead seabream	MODERN SPECIES	3	ddx54 (ENSSAUG00010024869)	rab14 (ENSSAUG00010024847)	ABL1 (ENSSAUG00010024811)	exosc2 (ENSSAUG00010024796)	RIC1 (ENSSAUG00010024782)	ERMP1 (ENSSAUG00010024745)	oaz1b (ENSSAUG00010024738)	UHRF2 (ENSSAUG00010024681)	KIAA2026 (ENSSAUG00010024672)	MLANA (ENSSAUG00010024670)	ENSSAUG00010024585	nup155 (ENSSAUG00010024341)	ENSSAUG00010024333	ARVCF (ENSSAUG00010024329)	BMP10 (ENSSAUG00010024327)	smad4a (ENSSAUG00010024325) ##22	rfx3 (ENSSAUG00010024276)	glis3 (ENSSAUG00010024264)	UNC5C (ENSSAUG00010022876)	bmpr1bb (ENSSAUG00010022511)	pdlim5b (ENSSAUG00010022506)	opn4xa (ENSSAUG00010022504)	gdnfa (ENSSAUG00010022502)	WDR70 (ENSSAUG00010022165)	ENSSAUG00010022160	FAM222A (ENSSAUG00010022159)	ENSSAUG00010022158	git2b (ENSSAUG00010021972)	ENSSAUG00010021723	srsf9 (ENSSAUG00010021704)	ENSSAUG00010021534
Perciformes	ANCESTRAL SPECIES	16	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Pike perch	MODERN SPECIES	48	ddx54 (ENSSLUG00000015044)	rab14 (ENSSLUG00000015897)	ABL1 (ENSSLUG00000015925)	exosc2 (ENSSLUG00000016017)	RIC1 (ENSSLUG00000016075)	ERMP1 (ENSSLUG00000016162)	oaz1b (ENSSLUG00000016174)	UHRF2 (ENSSLUG00000016186)	ENSSLUG00000016357	ENSSLUG00000016379	nup155 (ENSSLUG00000016520)	ENSSLUG00000017131	ENSSLUG00000017136	ARVCF (ENSSLUG00000017152)	BMP10 (ENSSLUG00000017205)	smad4a (ENSSLUG00000017212) ##22	rfx3 (ENSSLUG00000017230)	glis3 (ENSSLUG00000017236)	UNC5C (ENSSLUG00000017419)	bmpr1bb (ENSSLUG00000020466)	ENSSLUG00000020884	ENSSLUG00000020887	pdlim5b (ENSSLUG00000020893)	opn4xa (ENSSLUG00000020911)	gdnfa (ENSSLUG00000020913)	WDR70 (ENSSLUG00000020966)	ENSSLUG00000021744	FAM222A (ENSSLUG00000021750)	ENSSLUG00000021752	git2b (ENSSLUG00000021797)	ENSSLUG00000022077
Channel bull blenny	MODERN SPECIES	3	ddx54 (ENSCGOG00000006489)	rab14 (ENSCGOG00000006925)	ABL1 (ENSCGOG00000007126)	exosc2 (ENSCGOG00000007190)	RIC1 (ENSCGOG00000007380)	ERMP1 (ENSCGOG00000007891)	oaz1b (ENSCGOG00000007978)	UHRF2 (ENSCGOG00000008002)	ENSCGOG00000008669	ENSCGOG00000008729	nup155 (ENSCGOG00000011506)	ENSCGOG00000012730	ENSCGOG00000012732	ARVCF (ENSCGOG00000012737)	BMP10 (ENSCGOG00000012935)	smad4a (ENSCGOG00000012994) ##22	rfx3 (ENSCGOG00000014006)	glis3 (ENSCGOG00000014201)	ENSCGOG00000014204	UNC5C (ENSCGOG00000014277)	bmpr1bb (ENSCGOG00000016442)	pdlim5b (ENSCGOG00000016992)	opn4xa (ENSCGOG00000016995)	gdnfa (ENSCGOG00000017012)	WDR70 (ENSCGOG00000017028)	FAM222A (ENSCGOG00000017377)	ENSCGOG00000019162	git2b (ENSCGOG00000017411)	ENSCGOG00000019195	srsf9 (ENSCGOG00000020370)	ENSCGOG00000020371
Cottioidei	ANCESTRAL SPECIES	18	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e	ENSGT00390000015433	ENSGT00800000124150	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b	ENSGT00940000156871.p	ENSGT00940000156839	ENSGT00390000006265.b.c
Stickleback	MODERN SPECIES	13	tbx5a (ENSGACG00000016787)	ddx54 (ENSGACG00000016793)	RAB14 (ENSGACG00000016799)	ABL1 (ENSGACG00000016802)	exosc2 (ENSGACG00000016805)	RIC1 (ENSGACG00000016817)	ERMP1 (ENSGACG00000016822)	oaz1b (ENSGACG00000016830)	ENSGACG00000016831	ENSGACG00000016833	ENSGACG00000016835	nup155 (ENSGACG00000016842)	ENSGACG00000016849	ARVCF (ENSGACG00000016852)	BMP10 (ENSGACG00000016855)	smad4a (ENSGACG00000016858) ##22	rfx3 (ENSGACG00000016864)	UNC5C (ENSGACG00000016867)	bmpr1bb (ENSGACG00000016869)	pdlim5b (ENSGACG00000016879)	opn4xa (ENSGACG00000016885)	gdnfa (ENSGACG00000016887)	WDR70 (ENSGACG00000016889)	ENSGACG00000016906	ENSGACG00000016907	ENSGACG00000016908	FAM222A (ENSGACG00000016910)	ENSGACG00000016911	git2b (ENSGACG00000016912)	ENSGACG00000016916	srsf9 (ENSGACG00000016921)
Lumpfish	MODERN SPECIES	3	rab14 (ENSCLMG00005002289)	ABL1 (ENSCLMG00005002301)	exosc2 (ENSCLMG00005002457)	RIC1 (ENSCLMG00005002458)	ERMP1 (ENSCLMG00005002477)	oaz1b (ENSCLMG00005002514)	UHRF2 (ENSCLMG00005002519)	ENSCLMG00005002561	ENSCLMG00005002563	ENSCLMG00005002624	nup155 (ENSCLMG00005013612)	ENSCLMG00005013613	ENSCLMG00005013615	ARVCF (ENSCLMG00005013622)	BMP10 (ENSCLMG00005013623)	smad4a (ENSCLMG00005013627) ##22	rfx3 (ENSCLMG00005013930)	glis3 (ENSCLMG00005014786)	UNC5C (ENSCLMG00005014796)	bmpr1bb (ENSCLMG00005014799)	pdlim5b (ENSCLMG00005014956)	opn4xa (ENSCLMG00005014962)	gdnfa (ENSCLMG00005014972)	WDR70 (ENSCLMG00005014985)	FAM222A (ENSCLMG00005015844)	ENSCLMG00005015845	ENSCLMG00005015846	git2b (ENSCLMG00005015872)	ENSCLMG00005016138	srsf9 (ENSCLMG00005016142)	ENSCLMG00005016156
Protacanthopterygii	ANCESTRAL SPECIES	77	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000161387	ENSGT00940000155464.a.a	ENSGT00390000010427.c	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b ##22	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.b.a	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	407							ENSGT00940000161387.b	ENSGT00940000155464.a.a.h	ENSGT00390000010427.c.q.b	ENSGT00390000016532.k	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k ##22	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d	ENSGT00390000015433.g.a.a	ENSGT00390000004796.d.b	ENSGT00390000016767.r.b	ENSGT00530000063811.B.b.c	ENSGT00940000155182.a.c	ENSGT00940000156383.b.a	ENSGT00940000156871.p.c	ENSGT00940000163530.k.b
Huchen	MODERN SPECIES	1080			ENSHHUG00000019842	skp2 (ENSHHUG00000019999)	ENSHHUG00000020054	RANBP3L (ENSHHUG00000020077)	SLC1A3 (ENSHHUG00000020089)	ENSHHUG00000020137	ENSHHUG00000020151	nup155 (ENSHHUG00000020176)	ENSHHUG00000020744	ENSHHUG00000020776	ARVCF (ENSHHUG00000020789)	npffr1l3 (ENSHHUG00000020821)	BMP10 (ENSHHUG00000020900)	smad4a (ENSHHUG00000020905) ##22	rfx3 (ENSHHUG00000021086)	glis3 (ENSHHUG00000021162)	ENSHHUG00000021217
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000156466.tb.a.b	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b	ENSGT00390000007918.d	ENSGT00390000006320.r	ENSGT00940000161387.b	ENSGT00940000155464.a.a.h	ENSGT00390000010427.c.q.b	ENSGT00390000016532.k	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k ##22	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d	ENSGT00390000015433.g.a.a	ENSGT00390000004796.d.b	ENSGT00390000016767.r.b	ENSGT00530000063811.B.b.c	ENSGT00940000155182.a.c	ENSGT00940000156383.b.a	ENSGT00940000156871.p.c	ENSGT00940000163530.k.b
Salmo	ANCESTRAL SPECIES	13	ENSGT00940000156466.tb.a.a.a	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b	ENSGT00390000007918.d	ENSGT00390000006320.r	ENSGT00940000161387.b	ENSGT00940000155464.a.a.h	ENSGT00390000010427.c.q.b	ENSGT00390000016532.k	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k ##22	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d	ENSGT00390000015433.g.a.a	ENSGT00390000004796.d.b	ENSGT00390000016767.r.b	ENSGT00530000063811.B.b.c	ENSGT00940000155182.a.c	ENSGT00940000156383.b.a	ENSGT00940000156871.p.c	ENSGT00940000163530.k.b
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000105075	myo5b (ENSSSAG00000069046)	ENSSSAG00000068795	SKP2 (ENSSSAG00000068716)	NADK2 (ENSSSAG00000068701)	RANBP3L (ENSSSAG00000068697)	SLC1A3 (ENSSSAG00000068621)	ENSSSAG00000068186	ENSSSAG00000063799	ENSSSAG00000107554	ENSSSAG00000095093	ENSSSAG00000100999	ENSSSAG00000063454	npffr1l3 (ENSSSAG00000000750)	ENSSSAG00000100713	smad4a (ENSSSAG00000062684) ##22	rfx3 (ENSSSAG00000057457)	glis3 (ENSSSAG00000057357)	UNC5C (ENSSSAG00000055545)	bmpr1bb (ENSSSAG00000054353)	pdlim5b (ENSSSAG00000054329)	opn4xa (ENSSSAG00000054324)	gdnfa (ENSSSAG00000098062)	ENSSSAG00000093882	ENSSSAG00000054318	ENSSSAG00000054309	ENSSSAG00000087649	ENSSSAG00000054301	ENSSSAG00000010075	ENSSSAG00000006783	ENSSSAG00000119571
River trout	MODERN SPECIES	6	myo5b (ENSSTUG00000020444)	ENSSTUG00000020351	skp2 (ENSSTUG00000020264)	nadk2 (ENSSTUG00000020232)	RANBP3L (ENSSTUG00000020202)	SLC1A3 (ENSSTUG00000019871)	nup155 (ENSSTUG00000015735)	ENSSTUG00000015590	ENSSTUG00000015565	ENSSTUG00000015561	ENSSTUG00000015553	ARVCF (ENSSTUG00000015545)	ENSSTUG00000015535	npffr1l3 (ENSSTUG00000015389)	BMP10 (ENSSTUG00000015382)	smad4a (ENSSTUG00000015304) ##22	rfx3 (ENSSTUG00000014922)	glis3 (ENSSTUG00000014854)	UNC5C (ENSSTUG00000012118)	bmpr1bb (ENSSTUG00000011743)	pdlim5b (ENSSTUG00000011721)	opn4xa (ENSSTUG00000011711)	gdnfa (ENSSTUG00000011702)	PGAM5 (ENSSTUG00000011683)	ENSSTUG00000011655	FAM222A (ENSSTUG00000011650)	ENSSTUG00000011640	git2b (ENSSTUG00000007930)	ENSSTUG00000005472	triap1 (ENSSTUG00000005359)	srsf9 (ENSSTUG00000005329)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000156466.tb.a.b	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b	ENSGT00390000007918.d	ENSGT00390000006320.r	ENSGT00940000161387.b	ENSGT00940000155464.a.a.h	ENSGT00390000010427.c.q.b	ENSGT00390000016532.k	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k ##22	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d	ENSGT00530000063811.B.b.c	ENSGT00940000155182.a.c	ENSGT00940000156383.b.a	ENSGT00940000156871.p.c	ENSGT00940000163530.k.b	ENSGT00940000156839.j.a.a.b	ENSGT00950000182923.C.b	ENSGT00940000160711.h.a
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00940000156466.tb.a.b	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b	ENSGT00390000007918.d	ENSGT00390000006320.r	ENSGT00940000161387.b	ENSGT00940000155464.a.a.h	ENSGT00390000010427.c.q.b	ENSGT00390000016532.k	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k ##22	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d	ENSGT00530000063811.B.b.c	ENSGT00940000155182.a.c	ENSGT00940000156383.b.a	ENSGT00940000156871.p.c	ENSGT00940000163530.k.b	ENSGT00940000156839.j.a.a.b	ENSGT00950000182923.C.b	ENSGT00940000160711.h.a
Coho salmon	MODERN SPECIES	26	CAPSL (ENSOKIG00005019987)	ENSOKIG00005019996	myo5b (ENSOKIG00005020119)	ENSOKIG00005020916	ENSOKIG00005020959	skp2 (ENSOKIG00005021126)	nadk2 (ENSOKIG00005021162)	RANBP3L (ENSOKIG00005021233)	SLC1A3 (ENSOKIG00005021263)	ENSOKIG00005021324	ENSOKIG00005022343	ENSOKIG00005022380	ARVCF (ENSOKIG00005022603)	npffr1l3 (ENSOKIG00005022916)	BMP10 (ENSOKIG00005023344)	smad4a (ENSOKIG00005023370) ##22	rfx3 (ENSOKIG00005000211)	glis3 (ENSOKIG00005000292)	UNC5C (ENSOKIG00005000358)	bmpr1bb (ENSOKIG00005000475)	pdlim5b (ENSOKIG00005000574)	opn4xa (ENSOKIG00005000598)	gdnfa (ENSOKIG00005000606)	FAM222A (ENSOKIG00005000613)	ENSOKIG00005000617	ENSOKIG00005000729	ENSOKIG00005001029	ENSOKIG00005001127	srsf9 (ENSOKIG00005001135)	GAL3ST1 (ENSOKIG00005001146)	ENSOKIG00005001152
Chinook salmon	MODERN SPECIES	33	lmbrd2b (ENSOTSG00005001331)	capslb (ENSOTSG00005003361)	ENSOTSG00005003363	myo5b (ENSOTSG00005003595)	ENSOTSG00005024755	skp2 (ENSOTSG00005025201)	RANBP3L (ENSOTSG00005025207)	SLC1A3 (ENSOTSG00005025217)	ENSOTSG00005025366	nup155 (ENSOTSG00005025431)	ENSOTSG00005025441	ENSOTSG00005025444	ARVCF (ENSOTSG00005025448)	npffr1l3 (ENSOTSG00005025462)	BMP10 (ENSOTSG00005025463)	smad4a (ENSOTSG00005025465) ##22	rfx3 (ENSOTSG00005025481)	glis3 (ENSOTSG00005026106)	ENSOTSG00005026107	ENSOTSG00005026110	opn4xa (ENSOTSG00005026111)	gdnfa (ENSOTSG00005026112)	ENSOTSG00005026113	FAM222A (ENSOTSG00005026115)	ENSOTSG00005026116	git2b (ENSOTSG00005026144)	ENSOTSG00005034424	triap1 (ENSOTSG00005038376)	srsf9 (ENSOTSG00005038378)	GAL3ST1 (ENSOTSG00005038381)	ENSOTSG00005038382
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000004204	myo5b (ENSOMYG00000009470)	ENSOMYG00000073044	ENSOMYG00000026109	SKP2 (ENSOMYG00000027423)	RANBP3L (ENSOMYG00000027601)	SLC1A3 (ENSOMYG00000061009)	ENSOMYG00000027674	ENSOMYG00000049772	ENSOMYG00000027976	ENSOMYG00000027986	ENSOMYG00000028059	ENSOMYG00000070897	npffr1l3 (ENSOMYG00000028242)	ENSOMYG00000028251	smad4a (ENSOMYG00000028296) ##22	rfx3 (ENSOMYG00000028433)	ENSOMYG00000053960	ENSOMYG00000028571	ENSOMYG00000028573	glis3 (ENSOMYG00000028581)	UNC5C (ENSOMYG00000028666)	ENSOMYG00000050431	ENSOMYG00000070326	bmpr1bb (ENSOMYG00000065864)	pdlim5b (ENSOMYG00000028740)	opn4xa (ENSOMYG00000028749)	gdnfa (ENSOMYG00000028767)	ENSOMYG00000028796	gltp (ENSOMYG00000028810)	ENSOMYG00000029158
Salmoninae	ANCESTRAL SPECIES	479	ENSGT00390000002096.s.b	ENSGT00390000007918.d	ENSGT00390000006320.r	ENSGT00390000002096.s.a	ENSGT00390000007918.c	ENSGT00390000006320.q	ENSGT00940000161387.a	ENSGT00940000155464.a.a.g	ENSGT00390000010427.c.q.a	ENSGT00390000016532.j	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l ##22	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Huchen	MODERN SPECIES	336	ENSHHUG00000037087	ENSHHUG00000037090	myo5b (ENSHHUG00000037123)	cfap53 (ENSHHUG00000039484)	ENSHHUG00000039501	skp2 (ENSHHUG00000039623)	nadk2 (ENSHHUG00000039657)	ENSHHUG00000039713	SLC1A3 (ENSHHUG00000039718)	ENSHHUG00000039753	nup155 (ENSHHUG00000040054)	ENSHHUG00000040073	ARVCF (ENSHHUG00000040085)	npffr1l3 (ENSHHUG00000040093)	BMP10 (ENSHHUG00000040205)	smad4a (ENSHHUG00000040209) ##22	rfx3 (ENSHHUG00000040281)	glis3 (ENSHHUG00000040396)
Salmoninae_a	ANCESTRAL SPECIES	87	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a	ENSGT00390000007918.c	ENSGT00390000006320.q	ENSGT00940000161387.a	ENSGT00940000155464.a.a.g	ENSGT00390000010427.c.q.a	ENSGT00390000016532.j	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l ##22	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Salmo	ANCESTRAL SPECIES	54	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a	ENSGT00390000007918.c	ENSGT00390000006320.q	ENSGT00940000161387.a	ENSGT00940000155464.a.a.g	ENSGT00390000010427.c.q.a	ENSGT00390000016532.j	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l ##22	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Atlantic salmon	MODERN SPECIES		myo5b (ENSSSAG00000009979)	cfap53 (ENSSSAG00000068107)	ENSSSAG00000068114	ENSSSAG00000068165	SKP2 (ENSSSAG00000069118)	NADK2 (ENSSSAG00000069298)	RANBP3L (ENSSSAG00000001289)	SLC1A3 (ENSSSAG00000000163)	ENSSSAG00000000423	ENSSSAG00000089647	ENSSSAG00000000715	ENSSSAG00000083173	ENSSSAG00000000743	npffr1l3 (ENSSSAG00000086335)	ENSSSAG00000000757	smad4a (ENSSSAG00000000795) ##22	rfx3 (ENSSSAG00000000897)	glis3 (ENSSSAG00000001096)	UNC5C (ENSSSAG00000001322)	bmpr1bb (ENSSSAG00000001977)	pdlim5b (ENSSSAG00000002083)	opn4xa (ENSSSAG00000002109)	EGFLAM (ENSSSAG00000114100)	gdnf (ENSSSAG00000002112)	WDR70 (ENSSSAG00000002232)	ENSSSAG00000115396	pgam5 (ENSSSAG00000002540)	ENSSSAG00000002555	ENSSSAG00000094785	ENSSSAG00000113795	ENSSSAG00000002757
River trout	MODERN SPECIES	15	myo5b (ENSSTUG00000036648)	cfap53 (ENSSTUG00000037964)	ENSSTUG00000037985	ENSSTUG00000038043	skp2 (ENSSTUG00000039007)	nadk2 (ENSSTUG00000039039)	ENSSTUG00000039305	SLC1A3 (ENSSTUG00000039319)	ENSSTUG00000039642	nup155 (ENSSTUG00000039855)	ENSSTUG00000041795	ENSSTUG00000041824	ARVCF (ENSSTUG00000041839)	npffr1l3 (ENSSTUG00000041878)	BMP10 (ENSSTUG00000041896)	smad4a (ENSSTUG00000041923) ##22	rfx3 (ENSSTUG00000042197)	glis3 (ENSSTUG00000042999)	UNC5C (ENSSTUG00000043259)	bmpr1bb (ENSSTUG00000046660)	pdlim5b (ENSSTUG00000046781)	opn4xa (ENSSTUG00000046836)	EGFLAM (ENSSTUG00000046854)	gdnfa (ENSSTUG00000046858)	WDR70 (ENSSTUG00000046890)	PGAM5 (ENSSTUG00000047186)	ENSSTUG00000047189	FAM222A (ENSSTUG00000047236)	ENSSTUG00000047242	git2b (ENSSTUG00000047303)	ENSSTUG00000048062
Oncorhynchus	ANCESTRAL SPECIES	67	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a	ENSGT00390000007918.c	ENSGT00390000006320.q	ENSGT00940000161387.a	ENSGT00940000155464.a.a.g	ENSGT00390000010427.c.q.a	ENSGT00390000016532.j	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l ##22	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Rainbow trout	MODERN SPECIES	26	cfap53 (ENSOMYG00000029500)	ENSOMYG00000054485	ENSOMYG00000029474	ENSOMYG00000061263	ENSOMYG00000029426	SKP2 (ENSOMYG00000029285)	ENSOMYG00000029237	ENSOMYG00000058433	SLC1A3 (ENSOMYG00000029087)	ENSOMYG00000028750	ENSOMYG00000027761	ENSOMYG00000027345	ENSOMYG00000027312	npffr1l3 (ENSOMYG00000064507)	ENSOMYG00000056672	smad4a (ENSOMYG00000027201) ##22	rfx3 (ENSOMYG00000025811)	glis3 (ENSOMYG00000025428)	UNC5C (ENSOMYG00000024830)	bmpr1bb (ENSOMYG00000024378)	ENSOMYG00000052908	pdlim5b (ENSOMYG00000024242)	ENSOMYG00000071736	opn4xa (ENSOMYG00000024137)	EGFLAM (ENSOMYG00000024067)	gdnfa (ENSOMYG00000023974)	ENSOMYG00000053593	WDR70 (ENSOMYG00000044352)	ENSOMYG00000044341	ENSOMYG00000044335	ENSOMYG00000044332
Oncorhynchus_a	ANCESTRAL SPECIES	74	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a	ENSGT00390000007918.c	ENSGT00390000006320.q	ENSGT00940000161387.a	ENSGT00940000155464.a.a.g	ENSGT00390000010427.c.q.a	ENSGT00390000016532.j	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l ##22	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Chinook salmon	MODERN SPECIES	12	myo5b (ENSOTSG00005043022)	cfap53 (ENSOTSG00005043016)	ENSOTSG00005043015	ENSOTSG00005043012	skp2 (ENSOTSG00005043011)	nadk2 (ENSOTSG00005043007)	RANBP3L (ENSOTSG00005043005)	SLC1A3 (ENSOTSG00005042980)	ENSOTSG00005042935	nup155 (ENSOTSG00005042895)	ENSOTSG00005042889	ENSOTSG00005042888	ARVCF (ENSOTSG00005042886)	npffr1l3 (ENSOTSG00005042744)	BMP10 (ENSOTSG00005042742)	smad4a (ENSOTSG00005042678) ##22	rfx3 (ENSOTSG00005042621)	glis3 (ENSOTSG00005042613)	UNC5C (ENSOTSG00005038352)	bmpr1bb (ENSOTSG00005038334)	pdlim5b (ENSOTSG00005038329)	opn4xa (ENSOTSG00005038325)	EGFLAM (ENSOTSG00005038318)	gdnfa (ENSOTSG00005038314)	WDR70 (ENSOTSG00005038161)	ENSOTSG00005038158	PGAM5 (ENSOTSG00005038156)	ENSOTSG00005038153	FAM222A (ENSOTSG00005038150)	git2b (ENSOTSG00005037644)	ENSOTSG00005037265
Coho salmon	MODERN SPECIES	15	ENSOKIG00005019223	myo5b (ENSOKIG00005019261)	cfap53 (ENSOKIG00005019831)	ENSOKIG00005019847	ENSOKIG00005019937	NADK2 (ENSOKIG00005020080)	ENSOKIG00005020130	SLC1A3 (ENSOKIG00005020166)	ENSOKIG00005020398	nup155 (ENSOKIG00005020587)	ENSOKIG00005020783	ENSOKIG00005020799	ARVCF (ENSOKIG00005020840)	npffr1l3 (ENSOKIG00005021089)	BMP10 (ENSOKIG00005021094)	smad4a (ENSOKIG00005021114) ##22	rfx3 (ENSOKIG00005021336)	glis3 (ENSOKIG00005022187)	UNC5C (ENSOKIG00005022294)	bmpr1bb (ENSOKIG00005024956)	pdlim5b (ENSOKIG00005025261)	ENSOKIG00005025319	opn4xa (ENSOKIG00005025331)	EGFLAM (ENSOKIG00005025368)	gdnfa (ENSOKIG00005025394)	WDR70 (ENSOKIG00005025420)	ENSOKIG00005025511	PGAM5 (ENSOKIG00005025522)	ANKLE2 (ENSOKIG00005025533)	FAM222A (ENSOKIG00005025590)	ENSOKIG00005025600
Northern pike	MODERN SPECIES	13	cfap53 (ENSELUG00000024017)	ENSELUG00000023982	ENSELUG00000034220	ENSELUG00000023909	skp2 (ENSELUG00000023797)	nadk2 (ENSELUG00000023791)	RANBP3L (ENSELUG00000023720)	SLC1A3 (ENSELUG00000023711)	ENSELUG00000023664	nup155 (ENSELUG00000023540)	ENSELUG00000023445	ENSELUG00000023427	ARVCF (ENSELUG00000023403)	npffr1l3 (ENSELUG00000023384)	BMP10 (ENSELUG00000023371)	smad4a (ENSELUG00000023358) ##22	rfx3 (ENSELUG00000023330)	glis3 (ENSELUG00000023233)	UNC5C (ENSELUG00000023194)	bmpr1bb (ENSELUG00000023104)	pdlim5b (ENSELUG00000023053)	opn4xa (ENSELUG00000022879)	gdnfa (ENSELUG00000022651)	WDR70 (ENSELUG00000022635)	ENSELUG00000034272	ENSELUG00000022587	ENSELUG00000030270	PGAM5 (ENSELUG00000022185)	ENSELUG00000022120	ENSELUG00000022033	FAM222A (ENSELUG00000022046)
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Mummichog	MODERN SPECIES	254			rmi1 (ENSFHEG00000022124) #10	hnrnpk (ENSFHEG00000022225) #11	zgc:136564 (ENSFHEG00000022251) #12	ENSFHEG00000022255 #13	ENSFHEG00000022270 #13	ENSFHEG00000022283	gkap1 (ENSFHEG00000022319) #15	UBQLN1 (ENSFHEG00000022332) #16	IDNK (ENSFHEG00000022351) #17	FRMD3 (ENSFHEG00000022410) #18	ENSFHEG00000022420	RASEF (ENSFHEG00000022470) #20	ENSFHEG00000000557 #21	ENSFHEG00000022637 ##22	ENSFHEG00000022648	mex3b (ENSFHEG00000022740) #23	tmed7 (ENSFHEG00000022688) #24	fem1c (ENSFHEG00000022772) #25	ENSFHEG00000022782	pggt1b (ENSFHEG00000022817) #27	trim36 (ENSFHEG00000022883) #28	CCSER1 (ENSFHEG00000022919) #29
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Characoidei	ANCESTRAL SPECIES																	ENSGT00940000157435.b ##22
Red-bellied piranha	MODERN SPECIES	1935														me2 (ENSPNAG00000028790)	elac1 (ENSPNAG00000028826)	ENSPNAG00000028869 ##22