Canidae	ANCESTRAL SPECIES	13	ENSGT00940000160376 #7	ENSGT01100000263497.B.c.a #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #13	ENSGT00390000002615 #14	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b ##23	ENSGT00940000155073.b #24	ENSGT00950000183045.A.a.a #25	ENSGT00530000063866.j.b #26	ENSGT00390000013802 #27	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #30	ENSGT00950000182841.b.a.a.b.b #31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00940000155807.a	ENSGT00520000061410 #37
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000160376 #7	ENSGT01100000263497.B.c.a #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #13	ENSGT00390000002615 #14	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #23	ENSGT00940000155073.b #24	ENSGT00950000183045.A.a.a #25	ENSGT00530000063866.j.b #26	ENSGT00390000013802.m #27	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #30	ENSGT00950000182841.b.a.a.b.b #31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00940000155807.a	ENSGT00520000061410 #37
Dingo	DUPLICATION
Dingo	MODERN SPECIES	36	HNRNPUL2 (ENSCAFG00020013120) #7	GNG3 (ENSCAFG00020013115) #8	BSCL2 (ENSCAFG00020013107) #9	LRRN4CL (ENSCAFG00020013104) #10	UBXN1 (ENSCAFG00020013102) #11	UQCC3 (ENSCAFG00020013100) #12	CSKMT (ENSCAFG00020013099) #13	C11orf98 (ENSCAFG00020013094) #14	INTS5 (ENSCAFG00020013093) #15	GANAB (ENSCAFG00020013079) #16	B3GAT3 (ENSCAFG00020013076) #17	ROM1 (ENSCAFG00020013070) #18	EML3 (ENSCAFG00020013050) #19	MTA2 (ENSCAFG00020013043) #20	TUT1 (ENSCAFG00020013039) #21	EEF1G (ENSCAFG00020013031) #22	ENSCAFG00020013019 #23	ENSCAFG00020013011 #24	ASRGL1 (ENSCAFG00020013005) #25	ENSCAFG00020012998 #26	ENSCAFG00020012996 #27	ENSCAFG00020012994 #28	ENSCAFG00020012987 #29	INCENP (ENSCAFG00020012970) #30	ENSCAFG00020012965 #31	BEST1 (ENSCAFG00020012953) #32	RAB3IL1 (ENSCAFG00020012943) #33	FADS3 (ENSCAFG00020012916) #34	FADS2 (ENSCAFG00020012907) #35	FADS1 (ENSCAFG00020012860) #36	ENSCAFG00020012857 #37
Dingo	MODERN SPECIES	271	MYL12B (ENSCAFG00020020908)	ENSCAFG00020020914	TGIF1 (ENSCAFG00020020919)	DLGAP1 (ENSCAFG00020020947)	ENSCAFG00020021056	ENSCAFG00020021066	ZBTB14 (ENSCAFG00020021068)	ENSCAFG00020021069	EPB41L3 (ENSCAFG00020021170)	L3MBTL4 (ENSCAFG00020022524)	ENSCAFG00020022527	ENSCAFG00020022528	ENSCAFG00020022530	ENSCAFG00020022531	ENSCAFG00020022535	ENSCAFG00020022536 ##22	LRRC30 (ENSCAFG00020022537)	PTPRM (ENSCAFG00020022563)	RAB12 (ENSCAFG00020023721)	MTCL1 (ENSCAFG00020023727)	NDUFV2 (ENSCAFG00020023766)	ENSCAFG00020023769	ENSCAFG00020023774	TWSG1 (ENSCAFG00020023775)	ENSCAFG00020023779	RALBP1 (ENSCAFG00020023780)	PPP4R1 (ENSCAFG00020023782)	ENSCAFG00020023785	ENSCAFG00020023786	ENSCAFG00020023787	ENSCAFG00020023790
Dingo	MODERN SPECIES	205	ENSCAFG00020009722	OR4K15 (ENSCAFG00020009719)	ENSCAFG00020009715	ENSCAFG00020009703	ENSCAFG00020009696	ENSCAFG00020009692	ENSCAFG00020009691	ENSCAFG00020009666	ENSCAFG00020009664	ENSCAFG00020009662	ENSCAFG00020009660	ENSCAFG00020009659	ENSCAFG00020009656	OR4N5 (ENSCAFG00020009655)	ENSCAFG00020009636	ENSCAFG00020009632 ##22	ENSCAFG00020009629	LPCAT4 (ENSCAFG00020009624)	ENSCAFG00020009622	NOP10 (ENSCAFG00020009619)	ENSCAFG00020009616	ENSCAFG00020009615	ENSCAFG00020009574	ENSCAFG00020009569	EMC4 (ENSCAFG00020009567)	KATNBL1 (ENSCAFG00020009542)	EMC7 (ENSCAFG00020009540)	CHRM5 (ENSCAFG00020009539)	AVEN (ENSCAFG00020009528)	ENSCAFG00020009515	RYR3 (ENSCAFG00020008970)
Dog	DUPLICATION
Dog	MODERN SPECIES	35	LPIN2 (ENSCAFG00845002673)	MYOM1 (ENSCAFG00845002811)	ENSCAFG00845002989	MYL12B (ENSCAFG00845003004)	ENSCAFG00845003014	TGIF1 (ENSCAFG00845003025)	DLGAP1 (ENSCAFG00845003202)	AKAIN1 (ENSCAFG00845003415)	ZBTB14 (ENSCAFG00845003431)	EPB41L3 (ENSCAFG00845003573)	TMEM200C (ENSCAFG00845003836)	L3MBTL4 (ENSCAFG00845003867)	ARHGAP28 (ENSCAFG00845003916)	ENSCAFG00845003930	LAMA1 (ENSCAFG00845004002)	ENSCAFG00845004087 #22	LRRC30 (ENSCAFG00845004098)	PTPRM (ENSCAFG00845004181)	RAB12 (ENSCAFG00845004291)	MTCL1 (ENSCAFG00845004330)	ENSCAFG00845004451	NDUFV2 (ENSCAFG00845004461)	ANKRD12 (ENSCAFG00845004481)	ENSCAFG00845004503	TWSG1 (ENSCAFG00845004527)	RALBP1 (ENSCAFG00845004603)	PPP4R1 (ENSCAFG00845004616)	RAB31 (ENSCAFG00845004662)	ENSCAFG00845004677	VAPA (ENSCAFG00845004692)	APCDD1 (ENSCAFG00845004706)
Dog	MODERN SPECIES	23	ENSCAFG00845017912	ENSCAFG00845017948	ENSCAFG00845017973	OR4G11 (ENSCAFG00845018028)	ENSCAFG00845018053	OR4K5 (ENSCAFG00845018076)	ENSCAFG00845018110	OR4G8 (ENSCAFG00845018136)	ENSCAFG00845018170	OR4G18 (ENSCAFG00845018208)	OR4G10 (ENSCAFG00845018230)	OR4N5 (ENSCAFG00845018249)	OR4Q2 (ENSCAFG00845018324)	OR4F63 (ENSCAFG00845018343)	ENSCAFG00845018362	ENSCAFG00845018397 #22	ENSCAFG00845018434	ENSCAFG00845018553	NUTM1 (ENSCAFG00845018623)	ENSCAFG00845018738	ENSCAFG00845018772	SLC12A6 (ENSCAFG00845019004)	EMC4 (ENSCAFG00845019980)	ENSCAFG00845020042	KATNBL1 (ENSCAFG00845020083)	EMC7 (ENSCAFG00845020226)	CHRM5 (ENSCAFG00845020291)	ENSCAFG00845020339	RYR3 (ENSCAFG00845025226)	TMCO5B (ENSCAFG00845031108)	FMN1 (ENSCAFG00845031109)
Dog	MODERN SPECIES	3	ENSCAFG00845027377	SNRPC (ENSCAFG00845027420)	BLTP3A (ENSCAFG00845027489)	FKBP1A (ENSCAFG00845027743)	TAF11 (ENSCAFG00845027786)	ANKS1A (ENSCAFG00845027911)	TCP11 (ENSCAFG00845028305)	SCUBE3 (ENSCAFG00845028551)	ZNF76 (ENSCAFG00845028752)	DEF6 (ENSCAFG00845028897)	PPARD (ENSCAFG00845028955)	FANCE (ENSCAFG00845006312)	RPL10A (ENSCAFG00845006364)	TEAD3 (ENSCAFG00845006407)	TULP1 (ENSCAFG00845006584)	ENSCAFG00845006823 #22	ENSCAFG00845006865	ENSCAFG00845006891	ARMC12 (ENSCAFG00845006948)	CLPSL2 (ENSCAFG00845006989)	CLPS (ENSCAFG00845007025)	LHFPL5 (ENSCAFG00845007108)	SRPK1 (ENSCAFG00845007276)	SLC26A8 (ENSCAFG00845007666)	MAPK14 (ENSCAFG00845008249)	MAPK14 (ENSCAFG00845008508)	BRPF3 (ENSCAFG00845008645)	PNPLA1 (ENSCAFG00845008874)	BNIP5 (ENSCAFG00845008912)	ETV7 (ENSCAFG00845009107)	PXT1 (ENSCAFG00845009357)
Red fox	DUPLICATION
Red fox	DUPLICATION
Red fox	MODERN SPECIES	49	TTC9C (ENSVVUG00000029845)	HNRNPUL2 (ENSVVUG00000029847) #7	GNG3 (ENSVVUG00000029850) #8	BSCL2 (ENSVVUG00000029852) #9	ENSVVUG00000029854 #10	UBXN1 (ENSVVUG00000029856) #11	UQCC3 (ENSVVUG00000029857) #12	CSKMT (ENSVVUG00000029858) #13	INTS5 (ENSVVUG00000029860) #15	GANAB (ENSVVUG00000029861) #16	B3GAT3 (ENSVVUG00000029862) #17	ROM1 (ENSVVUG00000029863) #18	EML3 (ENSVVUG00000029864) #19	MTA2 (ENSVVUG00000029872) #20	TUT1 (ENSVVUG00000029882) #21	EEF1G (ENSVVUG00000029883) #22	AHNAK (ENSVVUG00000029889) ##23	SCGB1A1 (ENSVVUG00000029891) #24	ASRGL1 (ENSVVUG00000029892) #25	ENSVVUG00000029894 #26	ENSVVUG00000029895 #27
Red fox	MODERN SPECIES	40	FAM184A (ENSVVUG00000015630)	MAN1A1 (ENSVVUG00000014582)	TBC1D32 (ENSVVUG00000014396)	GJA1 (ENSVVUG00000014389)	ENSVVUG00000014381	ENSVVUG00000014369	ENSVVUG00000014365	SPTLC3 (ENSVVUG00000014355)	ISM1 (ENSVVUG00000014349)	TASP1 (ENSVVUG00000014321) ##25	ESF1 (ENSVVUG00000014318)	NDUFAF5 (ENSVVUG00000014314)	ENSVVUG00000014312	SEL1L2 (ENSVVUG00000014288)	ENSVVUG00000014282	ENSVVUG00000014270 #22	FLRT3 (ENSVVUG00000014266)	ENSVVUG00000014232	KIF16B (ENSVVUG00000014146)	SNRPB2 (ENSVVUG00000014114)	OTOR (ENSVVUG00000014110)	ENSVVUG00000014108	PCSK2 (ENSVVUG00000014102)	BFSP1 (ENSVVUG00000014097)	ENSVVUG00000014095	DSTN (ENSVVUG00000014088)	RRBP1 (ENSVVUG00000013194)	BANF2 (ENSVVUG00000013129)	SNX5 (ENSVVUG00000013100)	MGME1 (ENSVVUG00000013096)	OVOL2 (ENSVVUG00000013094)
Red fox	MODERN SPECIES	28	ACTC1 (ENSVVUG00000026308)	ENSVVUG00000026309	AQR (ENSVVUG00000026312)	ZNF770 (ENSVVUG00000026316)	DPH6 (ENSVVUG00000026321)	ENSVVUG00000026323	CUNH15orf41 (ENSVVUG00000026338)	MEIS2 (ENSVVUG00000026356)	TMCO5A (ENSVVUG00000026376)	SPRED1 (ENSVVUG00000026378)	FAM98B (ENSVVUG00000026383)	RASGRP1 (ENSVVUG00000026388)	THBS1 (ENSVVUG00000026406)	FSIP1 (ENSVVUG00000026413)	GPR176 (ENSVVUG00000026415)	ENSVVUG00000026419 #22	ENSVVUG00000026423	ENSVVUG00000026425	EIF2AK4 (ENSVVUG00000026429)	ENSVVUG00000026442	BMF (ENSVVUG00000026444)	BUB1B (ENSVVUG00000026450)	PAK6 (ENSVVUG00000026462)	ANKRD63 (ENSVVUG00000026463)	PLCB2 (ENSVVUG00000026474)	CCDC9B (ENSVVUG00000026575)	DISP2 (ENSVVUG00000026578)	KNSTRN (ENSVVUG00000026580)	IVD (ENSVVUG00000026582)	BAHD1 (ENSVVUG00000026583)	CCDC32 (ENSVVUG00000026588)
Red fox	MODERN SPECIES	55	SMCHD1 (ENSVVUG00000007320)	EMILIN2 (ENSVVUG00000008678)	LPIN2 (ENSVVUG00000008689)	MYOM1 (ENSVVUG00000008791)	ENSVVUG00000009225	MYL12B (ENSVVUG00000009238)	TGIF1 (ENSVVUG00000009272)	DLGAP1 (ENSVVUG00000009317)	ZBTB14 (ENSVVUG00000010107)	EPB41L3 (ENSVVUG00000010125)	ENSVVUG00000010208	L3MBTL4 (ENSVVUG00000010230)	ARHGAP28 (ENSVVUG00000010346)	ENSVVUG00000010487	LAMA1 (ENSVVUG00000010548)	ENSVVUG00000011552 #22	LRRC30 (ENSVVUG00000011556)	PTPRM (ENSVVUG00000011599)	RAB12 (ENSVVUG00000011748)	MTCL1 (ENSVVUG00000011763)	NDUFV2 (ENSVVUG00000011795)	ANKRD12 (ENSVVUG00000011805)	ENSVVUG00000011816	TWSG1 (ENSVVUG00000011819)	RALBP1 (ENSVVUG00000011826)	ENSVVUG00000011839	PPP4R1 (ENSVVUG00000011841)	RAB31 (ENSVVUG00000011854)	ENSVVUG00000011863	VAPA (ENSVVUG00000011865)	APCDD1 (ENSVVUG00000011874)