Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000161486	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #9	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #13	ENSGT00390000002615 #14	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b ##23	ENSGT00940000154902.bb.a #23	ENSGT00940000155073.b #24	ENSGT00950000183045.A.a.a #25	ENSGT00390000013802 #26	ENSGT00530000063866 #27	ENSGT00730000111073 #28	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b #29	ENSGT00940000158650 #30	ENSGT00940000159102 #31	ENSGT00950000182990.a.a.a.b.u.b #32	ENSGT00950000182990.a.a.a.b.u.a.a #33	ENSGT00950000182990.a.a.b.b #34	ENSGT00520000061410 #35	ENSGT00940000155807.a #36
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000161486	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #9	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #13	ENSGT00390000002615 #14	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #23	ENSGT00940000154902.bb.b ##23	ENSGT00940000155073.b #24	ENSGT00950000183045.A.a.a #25	ENSGT00390000013802 #26	ENSGT00530000063866 #27	ENSGT00730000111073 #28	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a #29	ENSGT00940000158650 #30	ENSGT00940000159102 #31	ENSGT00950000182990.a.a.a.b.u.b #32	ENSGT00950000182990.a.a.a.b.u.a.a #33	ENSGT00950000182990.a.a.b.b #34	ENSGT00520000061410 #35	ENSGT00940000155807.a #36
Caprinae	ANCESTRAL SPECIES	20	ENSGT00940000160376 #7	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #13	ENSGT00390000002615 #14	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b ##23	ENSGT00940000154902.bb.a #23	ENSGT00940000155073.b #24	ENSGT00950000183045.A.a.a #25	ENSGT00390000013802 #26	ENSGT00530000063866 #27	ENSGT00730000111073 #28	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a #29	ENSGT00940000158650 #30	ENSGT00940000159102 #31	ENSGT00950000182990.a.a.a.b.u.b #32	ENSGT00950000182990.a.a.a.b.u.a.a #33	ENSGT00950000182990.a.a.b.b #34	ENSGT00520000061410 #35	ENSGT00940000155807.a #36
Rambouillet Sheep	MODERN SPECIES	13	HNRNPUL2 (ENSOARG00020021145) #7	GNG3 (ENSOARG00020021111) #8	BSCL2 (ENSOARG00020021030) #9	LRRN4CL (ENSOARG00020021003) #10	UBXN1 (ENSOARG00020020882) #11	UQCC3 (ENSOARG00020020837) #12	CSKMT (ENSOARG00020020799) #13	C11orf98 (ENSOARG00020020766) #14	INTS5 (ENSOARG00020020736) #15	GANAB (ENSOARG00020019614) #16	B3GAT3 (ENSOARG00020019536) #17	ROM1 (ENSOARG00020019491) #18	EML3 (ENSOARG00020019331) #19	MTA2 (ENSOARG00020019166) #20	TUT1 (ENSOARG00020019099) #21	EEF1G (ENSOARG00020019042) #22	ENSOARG00020018899 #23	SCGB1A1 (ENSOARG00020018859) #24	ASRGL1 (ENSOARG00020018816) #25	ENSOARG00020018768 #26	ENSOARG00020018723 #27	INCENP (ENSOARG00020018586) #28	FTH1 (ENSOARG00020018402) #29	BEST1 (ENSOARG00020018322) #30	RAB3IL1 (ENSOARG00020017922) #31	FADS3 (ENSOARG00020017693) #32	ENSOARG00020017431 #33	FADS1 (ENSOARG00020017320) #34	ENSOARG00020017287 #35	FEN1 (ENSOARG00020017260) #36	ENSOARG00020017205 #37
Goat	DUPLICATION
Goat	MODERN SPECIES	1	ENSCHIG00000003392	LRRC9 (ENSCHIG00000025206)	PCNX4 (ENSCHIG00000027192)	DHRS7 (ENSCHIG00000026336)	ENSCHIG00000006564	ENSCHIG00000022625	SIX6 (ENSCHIG00000017541)	SIX1 (ENSCHIG00000024896)	SIX4 (ENSCHIG00000012309)	ENSCHIG00000022102	MNAT1 (ENSCHIG00000021930)	TRMT5 (ENSCHIG00000018801)	SLC38A6 (ENSCHIG00000020159)	TMEM30B (ENSCHIG00000009225)	PRKCH (ENSCHIG00000016844)	ENSCHIG00000018951 #22	HIF1A (ENSCHIG00000015613)	SNAPC1 (ENSCHIG00000011278)	SYT16 (ENSCHIG00000021144)	ENSCHIG00000006728	KCNH5 (ENSCHIG00000000501)	RHOJ (ENSCHIG00000016760)	GPHB5 (ENSCHIG00000025724)	ENSCHIG00000024045	PPP2R5E (ENSCHIG00000025432)	WDR89 (ENSCHIG00000013306)	SGPP1 (ENSCHIG00000020626)	ENSCHIG00000022808	SYNE2 (ENSCHIG00000017393)	ESR2 (ENSCHIG00000011683)	ENSCHIG00000026739
Goat	MODERN SPECIES	21	HNRNPUL2 (ENSCHIG00000020213) #7	GNG3 (ENSCHIG00000015824) #8	BSCL2 (ENSCHIG00000026480) #9	LRRN4CL (ENSCHIG00000009031) #10	UBXN1 (ENSCHIG00000006820) #11	UQCC3 (ENSCHIG00000018953) #12	CSKMT (ENSCHIG00000011409) #13	C11orf98 (ENSCHIG00000022514) #14	INTS5 (ENSCHIG00000013982) #15	GANAB (ENSCHIG00000022447) #16	ENSCHIG00000016332 #17	ROM1 (ENSCHIG00000010262) #18	EML3 (ENSCHIG00000021585) #19	MTA2 (ENSCHIG00000015501) #20	TUT1 (ENSCHIG00000006765) #21	ENSCHIG00000022487 #22	AHNAK (ENSCHIG00000015249) ##23	ASRGL1 (ENSCHIG00000024873) #25	ENSCHIG00000018172 #26	ENSCHIG00000013354 #27	INCENP (ENSCHIG00000023449) #28	FTH1 (ENSCHIG00000018949) ##29	BEST1 (ENSCHIG00000005599) #30	RAB3IL1 (ENSCHIG00000018161) #31	FADS3 (ENSCHIG00000026956) #32	ENSCHIG00000015460 #33	FADS1 (ENSCHIG00000022314) #34	ENSCHIG00000013437 #35	FEN1 (ENSCHIG00000009155) #36	ENSCHIG00000018241 #37	MYRF (ENSCHIG00000003036)
Bovinae	ANCESTRAL SPECIES	24	ENSGT00940000161486	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #9	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #13	ENSGT00390000002615 #14	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #23	ENSGT00940000154902.bb.b ##23	ENSGT00940000155073.b #24	ENSGT00950000183045.A.a.a #25	ENSGT00390000013802 #26	ENSGT00530000063866 #27	ENSGT00730000111073 #28	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a #29	ENSGT00940000158650 #30	ENSGT00940000159102 #31	ENSGT00950000182990.a.a.a.b.u.b #32	ENSGT00950000182990.a.a.a.b.u.a.a #33	ENSGT00950000182990.a.a.b.b #34	ENSGT00520000061410 #35	ENSGT00940000155807.a #36
American bison	DUPLICATION
American bison	MODERN SPECIES	3248	HNRNPUL2 (ENSBBBG00000019515) #7	GNG3 (ENSBBBG00000019496) #8	BSCL2 (ENSBBBG00000005208) #9	LRRN4CL (ENSBBBG00000019428) #10	UBXN1 (ENSBBBG00000009187) #11	UQCC3 (ENSBBBG00000019369) #12	LBHD1 (ENSBBBG00000019358)	CSKMT (ENSBBBG00000007511) #13	INTS5 (ENSBBBG00000005016) #15	GANAB (ENSBBBG00000019296) #16	B3GAT3 (ENSBBBG00000004913) #17	ROM1 (ENSBBBG00000019099) #18	EML3 (ENSBBBG00000019090) #19	MTA2 (ENSBBBG00000019072) #20	TUT1 (ENSBBBG00000019032) #21	EEF1G (ENSBBBG00000019015) #22	ENSBBBG00000018998 #23	ENSBBBG00000004835 ##23	ENSBBBG00000018961 #24	ASRGL1 (ENSBBBG00000004812) #25	ENSBBBG00000018946 #26	ENSBBBG00000004805 #27	INCENP (ENSBBBG00000018936) #28	ENSBBBG00000018919 ##29	BEST1 (ENSBBBG00000004787) #30	RAB3IL1 (ENSBBBG00000018902) #31	FADS3 (ENSBBBG00000018899) #32	ENSBBBG00000004767 #33	FADS1 (ENSBBBG00000018803) #34	FEN1 (ENSBBBG00000008945) #36	ENSBBBG00000004696 #37
American bison	MODERN SPECIES	3240	ENSBBBG00000017613	LINGO2 (ENSBBBG00000017617)	C9orf72 (ENSBBBG00000017654)	IFNK (ENSBBBG00000017664)	MOB3B (ENSBBBG00000017671)	TEK (ENSBBBG00000008384)	LRRC19 (ENSBBBG00000017856)	IFT74 (ENSBBBG00000017924)	PLAA (ENSBBBG00000017959)	CAAP1 (ENSBBBG00000017988)	ENSBBBG00000004430	TUSC1 (ENSBBBG00000008010)	IZUMO3 (ENSBBBG00000018026)	ELAVL2 (ENSBBBG00000018068)	DMRTA1 (ENSBBBG00000018078)	ENSBBBG00000004445 #22	ENSBBBG00000018086	ENSBBBG00000018093	CDKN2A (ENSBBBG00000007436)	MTAP (ENSBBBG00000018131)	IFNE (ENSBBBG00000018139)	ENSBBBG00000006857	ENSBBBG00000018145	ENSBBBG00000009067	ENSBBBG00000018163	ENSBBBG00000018170
Bos	ANCESTRAL SPECIES	10	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00940000165347	ENSGT00940000158840	ENSGT00390000007109	ENSGT00940000161278	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00940000162423	ENSGT00940000163078	ENSGT00390000007552.f #22	ENSGT00940000165099	ENSGT00950000182991.B.y	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT00950000182991.B.z	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b	ENSGT01000000214430.a.a.a.a.a.b.ab	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.b.g.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.a.b	ENSGT01000000214430.a.a.a.a.a.b.`b.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.b.a.a.a.a
Bos_a	ANCESTRAL SPECIES	50	ENSGT00940000156665	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00940000165347	ENSGT00940000158840	ENSGT00940000161278	ENSGT00390000007109	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b ##23	ENSGT00940000154902.bb.a #23	ENSGT00940000162423	ENSGT00950000182991.B.y	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a
Wild yak	MODERN SPECIES	1714	HNRNPUL2 (ENSBMUG00000023420) #7	GNG3 (ENSBMUG00000023415) #8	BSCL2 (ENSBMUG00000023406) #9	UBXN1 (ENSBMUG00000023388) #11	UQCC3 (ENSBMUG00000023373) #12	CSKMT (ENSBMUG00000023360) #13	ENSBMUG00000023348 #14	INTS5 (ENSBMUG00000023343) #15	GANAB (ENSBMUG00000023315) #16	B3GAT3 (ENSBMUG00000023252) #17	ROM1 (ENSBMUG00000023222) #18	EML3 (ENSBMUG00000023212) #19	ENSBMUG00000023148 #20	ENSBMUG00000023138 #20	TUT1 (ENSBMUG00000023128) #21	EEF1G (ENSBMUG00000023113) #22	ENSBMUG00000023096 ##23	ENSBMUG00000023076 #23
Domestic yak	MODERN SPECIES	26	ENSBGRG00000001152	C9orf72 (ENSBGRG00000001111)	ENSBGRG00000001104	MOB3B (ENSBGRG00000001067)	ENSBGRG00000001020	TEK (ENSBGRG00000000666)	LRRC19 (ENSBGRG00000000556)	IFT74 (ENSBGRG00000000512)	PLAA (ENSBGRG00000000455)	CAAP1 (ENSBGRG00000000429)	ENSBGRG00000000412	TUSC1 (ENSBGRG00000002852)	IZUMO3 (ENSBGRG00000002804)	ELAVL2 (ENSBGRG00000002663)	DMRTA1 (ENSBGRG00000002642)	ENSBGRG00000002626 #22	ENSBGRG00000002560	ENSBGRG00000002533	IFNE (ENSBGRG00000002520)	ENSBGRG00000002505	ENSBGRG00000002476	ENSBGRG00000002472	ENSBGRG00000002462	ENSBGRG00000002456	ENSBGRG00000002447	ENSBGRG00000002442	ENSBGRG00000002439	ENSBGRG00000002434	KLHL9 (ENSBGRG00000002421)	ENSBGRG00000002413	ENSBGRG00000002407
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000005644	ENSGT01050000244898.a.a.a.b	ENSGT01000000214430.b	ENSGT00950000184123	ENSGT00940000158840	ENSGT00390000007109	ENSGT00940000161278	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT01100000263474.a.b.b.f.g.a.a.a	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00390000007552.f #22	ENSGT00940000162423	ENSGT00940000163078	ENSGT00950000182991.B.z	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b	ENSGT01000000214430.a.a.a.a.a.b.ab	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.`b.b.a.a.a	ENSGT00940000154359.e	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.b.a.b.b
Hybrid Bos Indicus	MODERN SPECIES	27	C9orf72 (ENSBIXG00005026955)	IFNK (ENSBIXG00005004601)	ENSBIXG00005002481	TEK (ENSBIXG00005026764)	IFT74 (ENSBIXG00005004546)	LRRC19 (ENSBIXG00005026561)	PLAA (ENSBIXG00005026552)	ENSBIXG00005026532	CAAP1 (ENSBIXG00005026525)	ENSBIXG00005004531	ENSBIXG00005026478	TUSC1 (ENSBIXG00005004523)	IZUMO3 (ENSBIXG00005026432)	ELAVL2 (ENSBIXG00005026326)	DMRTA1 (ENSBIXG00005026148)	ENSBIXG00005007636 #22	CDKN2B (ENSBIXG00005004453)	CDKN2A (ENSBIXG00005026038)	MTAP (ENSBIXG00005004427)	ENSBIXG00005025926	ENSBIXG00005007739	ENSBIXG00005025752	ENSBIXG00005025679	ENSBIXG00005025672	ENSBIXG00005025621	ENSBIXG00005025592	ENSBIXG00005025571	ENSBIXG00005025546	ENSBIXG00005025521	ENSBIXG00005005565	KLHL9 (ENSBIXG00005004321)
Cow	MODERN SPECIES	21	HNRNPUL2 (ENSBTAG00000002510) #7	GNG3 (ENSBTAG00000002508) #8	BSCL2 (ENSBTAG00000002503) #9	LRRN4CL (ENSBTAG00000010484) #10	UBXN1 (ENSBTAG00000010481) #11	UQCC3 (ENSBTAG00000010470) #12	CSKMT (ENSBTAG00000022293) #13	C29H11orf98 (ENSBTAG00000010465) #14	INTS5 (ENSBTAG00000010455) #15	GANAB (ENSBTAG00000016956) #16	B3GAT3 (ENSBTAG00000016950) #17	ROM1 (ENSBTAG00000001188) #18	EML3 (ENSBTAG00000011872) #19	MTA2 (ENSBTAG00000011865) #20	TUT1 (ENSBTAG00000011846) #21	EEF1G (ENSBTAG00000011843) #22	AHNAK (ENSBTAG00000013468) ##23	SCGB1A1 (ENSBTAG00000032918) #24	ASRGL1 (ENSBTAG00000006910) #25	SCGB2A2 (ENSBTAG00000015940) #26	SCGB1D (ENSBTAG00000040070) #27	INCENP (ENSBTAG00000050061) #28	FTH1 (ENSBTAG00000011184) #29	BEST1 (ENSBTAG00000011186) #30	RAB3IL1 (ENSBTAG00000015745) #31	FADS3 (ENSBTAG00000015511) #32	FADS2 (ENSBTAG00000015505) #33	FADS1 (ENSBTAG00000022294) #34	ENSBTAG00000053898 #35	FEN1 (ENSBTAG00000000064) #36	TMEM258 (ENSBTAG00000032557) #37
Siberian musk deer	MODERN SPECIES	1224	HNRNPUL2 (ENSMMSG00000012673) #7	BSCL2 (ENSMMSG00000012721) #9	ENSMMSG00000012801 #8	LRRN4CL (ENSMMSG00000012817) #10	UBXN1 (ENSMMSG00000012852) #11	UQCC3 (ENSMMSG00000012897) #12	LBHD1 (ENSMMSG00000012923)	CSKMT (ENSMMSG00000012987) #13	INTS5 (ENSMMSG00000013012) #15	GANAB (ENSMMSG00000013077) #16	B3GAT3 (ENSMMSG00000013309) #17	ENSMMSG00000013341 #18	EML3 (ENSMMSG00000013365) #19	MTA2 (ENSMMSG00000013445) #20	TUT1 (ENSMMSG00000013495) #21	EEF1G (ENSMMSG00000013530) #22	ENSMMSG00000013555 #23	ENSMMSG00000013596 ##23	SCGB1A1 (ENSMMSG00000013623) #24	ENSMMSG00000013643 #25	ENSMMSG00000013664 #26	ENSMMSG00000013681 #27	INCENP (ENSMMSG00000013713) #28	ENSMMSG00000013740 #29	BEST1 (ENSMMSG00000013766) #30	RAB3IL1 (ENSMMSG00000013829) #31	FADS3 (ENSMMSG00000013946) #32	ENSMMSG00000014017 #33	FADS1 (ENSMMSG00000014104) #34	ENSMMSG00000014149 #35	FEN1 (ENSMMSG00000014163) #36