Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00400000022873 #13	ENSGT00390000002615	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b #23	ENSGT00940000154902.bb.a #24	ENSGT00940000155073.b #25	ENSGT00950000183045.A.a.a #26	ENSGT00390000013802 #27	ENSGT00530000063866 #28	ENSGT00730000111073 #29	ENSGT00950000182841.b.a.a.b.a.a.a.b #31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a
Pecora	ANCESTRAL SPECIES	13	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00400000022873 #13	ENSGT00510000049875 #14	ENSGT00390000002615	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000155073.b #25	ENSGT00950000183045.A.a.a #26	ENSGT00390000013802 #27	ENSGT00530000063866 #28	ENSGT00730000111073 #29	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.b #31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	11	HNRNPUL2 (ENSCHYG00000017808) #7	GNG3 (ENSCHYG00000017765) #8	BSCL2 (ENSCHYG00000017544) #9	LRRN4CL (ENSCHYG00000017512) #10	UBXN1 (ENSCHYG00000017331) #11	UQCC3 (ENSCHYG00000017276) #12	LBHD1 (ENSCHYG00000017004) #13	CSKMT (ENSCHYG00000016962) #14	INTS5 (ENSCHYG00000016919) #15	GANAB (ENSCHYG00000016139) #16	B3GAT3 (ENSCHYG00000015841) #17	ROM1 (ENSCHYG00000015732) #18	EML3 (ENSCHYG00000015378) #19	MTA2 (ENSCHYG00000015186) #20	TUT1 (ENSCHYG00000015098) #21	EEF1G (ENSCHYG00000014986) #22	ENSCHYG00000014832 #23	ENSCHYG00000014697 #24	ENSCHYG00000014657 #25	ASRGL1 (ENSCHYG00000014526) #26	ENSCHYG00000014496 #27	ENSCHYG00000014447 #28	INCENP (ENSCHYG00000014341) #29	ENSCHYG00000014297 #30	ENSCHYG00000014166 #31	BEST1 (ENSCHYG00000014024) #32	RAB3IL1 (ENSCHYG00000013498) #33	FADS3 (ENSCHYG00000013278) #34	ENSCHYG00000012672 #35	FADS1 (ENSCHYG00000012487) #36	ENSCHYG00000012454 #37
Yarkand deer	MODERN SPECIES	1323					VAMP7 (ENSCHYG00000017918)	SPRY3 (ENSCHYG00000018105)	ENSCHYG00000018139	CLIC2 (ENSCHYG00000018163)	RAB39B (ENSCHYG00000018283)	ENSCHYG00000018338	ENSCHYG00000018655	MTCP1 (ENSCHYG00000018801)	CMC4 (ENSCHYG00000018917)	FUNDC2 (ENSCHYG00000018987)	F8 (ENSCHYG00000019104)	ENSCHYG00000020059 ##22	MPP1 (ENSCHYG00000020123)	DKC1 (ENSCHYG00000020555)	GAB3 (ENSCHYG00000020865)	ENSCHYG00000021132	ENSCHYG00000021194	ENSCHYG00000021240	ENSCHYG00000021269	ENSCHYG00000021292	FLNA (ENSCHYG00000021422)	ENSCHYG00000022474	DNASE1L1 (ENSCHYG00000022608)	TAFAZZIN (ENSCHYG00000022770)	ATP6AP1 (ENSCHYG00000023535)	GDI1 (ENSCHYG00000023645)	PLXNA3 (ENSCHYG00000023890)
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000161486	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #9	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00390000002615	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b #23	ENSGT00940000154902.bb.a #24	ENSGT00940000155073.b #25	ENSGT00950000183045.A.a.a #26	ENSGT00390000013802 #27	ENSGT00530000063866 #28	ENSGT00730000111073 #29	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a
Siberian musk deer	MODERN SPECIES	1224	HNRNPUL2 (ENSMMSG00000012673) #7	BSCL2 (ENSMMSG00000012721) #9	ENSMMSG00000012801 #8	LRRN4CL (ENSMMSG00000012817) #10	UBXN1 (ENSMMSG00000012852) #11	UQCC3 (ENSMMSG00000012897) #12	LBHD1 (ENSMMSG00000012923) #13	CSKMT (ENSMMSG00000012987) #14	INTS5 (ENSMMSG00000013012) #15	GANAB (ENSMMSG00000013077) #16	B3GAT3 (ENSMMSG00000013309) #17	ENSMMSG00000013341 #18	EML3 (ENSMMSG00000013365) #19	MTA2 (ENSMMSG00000013445) #20	TUT1 (ENSMMSG00000013495) #21	EEF1G (ENSMMSG00000013530) #22	ENSMMSG00000013555 #24	ENSMMSG00000013596 #23	SCGB1A1 (ENSMMSG00000013623) #25	ENSMMSG00000013643 #26	ENSMMSG00000013664 #27	ENSMMSG00000013681 #28	INCENP (ENSMMSG00000013713) #29	ENSMMSG00000013740 ##31	BEST1 (ENSMMSG00000013766) #32	RAB3IL1 (ENSMMSG00000013829) #33	FADS3 (ENSMMSG00000013946) #34	ENSMMSG00000014017 #35	FADS1 (ENSMMSG00000014104) #36	ENSMMSG00000014149 #37	FEN1 (ENSMMSG00000014163)
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000161486	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #9	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00390000002615	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000155073.b #25	ENSGT00950000183045.A.a.a #26	ENSGT00390000013802 #27	ENSGT00530000063866 #28	ENSGT00730000111073 #29	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a
Bovinae	ANCESTRAL SPECIES	24	ENSGT00940000161486	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #9	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00390000002615	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000155073.b #25	ENSGT00950000183045.A.a.a #26	ENSGT00390000013802 #27	ENSGT00530000063866 #28	ENSGT00730000111073 #29	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a
American bison	DUPLICATION
American bison	MODERN SPECIES	3248	HNRNPUL2 (ENSBBBG00000019515) #7	GNG3 (ENSBBBG00000019496) #8	BSCL2 (ENSBBBG00000005208) #9	LRRN4CL (ENSBBBG00000019428) #10	UBXN1 (ENSBBBG00000009187) #11	UQCC3 (ENSBBBG00000019369) #12	LBHD1 (ENSBBBG00000019358) #13	CSKMT (ENSBBBG00000007511) #14	INTS5 (ENSBBBG00000005016) #15	GANAB (ENSBBBG00000019296) #16	B3GAT3 (ENSBBBG00000004913) #17	ROM1 (ENSBBBG00000019099) #18	EML3 (ENSBBBG00000019090) #19	MTA2 (ENSBBBG00000019072) #20	TUT1 (ENSBBBG00000019032) #21	EEF1G (ENSBBBG00000019015) #22	ENSBBBG00000018998 #24	ENSBBBG00000004835 #23	ENSBBBG00000018961 #25	ASRGL1 (ENSBBBG00000004812) #26	ENSBBBG00000018946 #27	ENSBBBG00000004805 #28	INCENP (ENSBBBG00000018936) #29	ENSBBBG00000018919 ##31	BEST1 (ENSBBBG00000004787) #32	RAB3IL1 (ENSBBBG00000018902) #33	FADS3 (ENSBBBG00000018899) #34	ENSBBBG00000004767 #35	FADS1 (ENSBBBG00000018803) #36	FEN1 (ENSBBBG00000008945)	ENSBBBG00000004696
American bison	MODERN SPECIES	3240	ENSBBBG00000017613	LINGO2 (ENSBBBG00000017617)	C9orf72 (ENSBBBG00000017654)	IFNK (ENSBBBG00000017664)	MOB3B (ENSBBBG00000017671)	TEK (ENSBBBG00000008384)	LRRC19 (ENSBBBG00000017856)	IFT74 (ENSBBBG00000017924)	PLAA (ENSBBBG00000017959)	CAAP1 (ENSBBBG00000017988)	ENSBBBG00000004430	TUSC1 (ENSBBBG00000008010)	IZUMO3 (ENSBBBG00000018026)	ELAVL2 (ENSBBBG00000018068)	DMRTA1 (ENSBBBG00000018078)	ENSBBBG00000004445 #22	ENSBBBG00000018086	ENSBBBG00000018093	CDKN2A (ENSBBBG00000007436)	MTAP (ENSBBBG00000018131)	IFNE (ENSBBBG00000018139)	ENSBBBG00000006857	ENSBBBG00000018145	ENSBBBG00000009067	ENSBBBG00000018163	ENSBBBG00000018170
Bos	ANCESTRAL SPECIES	10	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00940000165347	ENSGT00940000158840	ENSGT00390000007109	ENSGT00940000161278	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00940000162423	ENSGT00940000163078	ENSGT00390000007552.f #22	ENSGT00940000165099	ENSGT00950000182991.B.y	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT00950000182991.B.z	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b	ENSGT01000000214430.a.a.a.a.a.b.ab	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.b.g.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.a.b	ENSGT01000000214430.a.a.a.a.a.b.`b.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.b.a.a.a.a
Bos_a	ANCESTRAL SPECIES	50	ENSGT00940000156665	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00940000165347	ENSGT00940000158840	ENSGT00940000161278	ENSGT00390000007109	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b #23	ENSGT00940000154902.bb.a #24	ENSGT00940000162423	ENSGT00950000182991.B.y	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a
Wild yak	MODERN SPECIES	1714	HNRNPUL2 (ENSBMUG00000023420) #7	GNG3 (ENSBMUG00000023415) #8	BSCL2 (ENSBMUG00000023406) #9	UBXN1 (ENSBMUG00000023388) #11	UQCC3 (ENSBMUG00000023373) #12	CSKMT (ENSBMUG00000023360) #14	ENSBMUG00000023348	INTS5 (ENSBMUG00000023343) #15	GANAB (ENSBMUG00000023315) #16	B3GAT3 (ENSBMUG00000023252) #17	ROM1 (ENSBMUG00000023222) #18	EML3 (ENSBMUG00000023212) #19	ENSBMUG00000023148 #20	ENSBMUG00000023138 #20	TUT1 (ENSBMUG00000023128) #21	EEF1G (ENSBMUG00000023113) #22	ENSBMUG00000023096 #23	ENSBMUG00000023076 #24
Domestic yak	MODERN SPECIES	26	ENSBGRG00000001152	C9orf72 (ENSBGRG00000001111)	ENSBGRG00000001104	MOB3B (ENSBGRG00000001067)	ENSBGRG00000001020	TEK (ENSBGRG00000000666)	LRRC19 (ENSBGRG00000000556)	IFT74 (ENSBGRG00000000512)	PLAA (ENSBGRG00000000455)	CAAP1 (ENSBGRG00000000429)	ENSBGRG00000000412	TUSC1 (ENSBGRG00000002852)	IZUMO3 (ENSBGRG00000002804)	ELAVL2 (ENSBGRG00000002663)	DMRTA1 (ENSBGRG00000002642)	ENSBGRG00000002626 #22	ENSBGRG00000002560	ENSBGRG00000002533	IFNE (ENSBGRG00000002520)	ENSBGRG00000002505	ENSBGRG00000002476	ENSBGRG00000002472	ENSBGRG00000002462	ENSBGRG00000002456	ENSBGRG00000002447	ENSBGRG00000002442	ENSBGRG00000002439	ENSBGRG00000002434	KLHL9 (ENSBGRG00000002421)	ENSBGRG00000002413	ENSBGRG00000002407
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000005644	ENSGT01050000244898.a.a.a.b	ENSGT01000000214430.b	ENSGT00950000184123	ENSGT00940000158840	ENSGT00390000007109	ENSGT00940000161278	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT01100000263474.a.b.b.f.g.a.a.a	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00390000007552.f #22	ENSGT00940000162423	ENSGT00940000163078	ENSGT00950000182991.B.z	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b	ENSGT01000000214430.a.a.a.a.a.b.ab	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.`b.b.a.a.a	ENSGT00940000154359.e	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.b.a.b.b
Hybrid Bos Indicus	MODERN SPECIES	27	C9orf72 (ENSBIXG00005026955)	IFNK (ENSBIXG00005004601)	ENSBIXG00005002481	TEK (ENSBIXG00005026764)	IFT74 (ENSBIXG00005004546)	LRRC19 (ENSBIXG00005026561)	PLAA (ENSBIXG00005026552)	ENSBIXG00005026532	CAAP1 (ENSBIXG00005026525)	ENSBIXG00005004531	ENSBIXG00005026478	TUSC1 (ENSBIXG00005004523)	IZUMO3 (ENSBIXG00005026432)	ELAVL2 (ENSBIXG00005026326)	DMRTA1 (ENSBIXG00005026148)	ENSBIXG00005007636 #22	CDKN2B (ENSBIXG00005004453)	CDKN2A (ENSBIXG00005026038)	MTAP (ENSBIXG00005004427)	ENSBIXG00005025926	ENSBIXG00005007739	ENSBIXG00005025752	ENSBIXG00005025679	ENSBIXG00005025672	ENSBIXG00005025621	ENSBIXG00005025592	ENSBIXG00005025571	ENSBIXG00005025546	ENSBIXG00005025521	ENSBIXG00005005565	KLHL9 (ENSBIXG00005004321)
Cow	MODERN SPECIES	21	HNRNPUL2 (ENSBTAG00000002510) #7	GNG3 (ENSBTAG00000002508) #8	BSCL2 (ENSBTAG00000002503) #9	LRRN4CL (ENSBTAG00000010484) #10	UBXN1 (ENSBTAG00000010481) #11	UQCC3 (ENSBTAG00000010470) #12	CSKMT (ENSBTAG00000022293) #14	C29H11orf98 (ENSBTAG00000010465)	INTS5 (ENSBTAG00000010455) #15	GANAB (ENSBTAG00000016956) #16	B3GAT3 (ENSBTAG00000016950) #17	ROM1 (ENSBTAG00000001188) #18	EML3 (ENSBTAG00000011872) #19	MTA2 (ENSBTAG00000011865) #20	TUT1 (ENSBTAG00000011846) #21	EEF1G (ENSBTAG00000011843) #22	AHNAK (ENSBTAG00000013468) #23	SCGB1A1 (ENSBTAG00000032918) #25	ASRGL1 (ENSBTAG00000006910) #26	SCGB2A2 (ENSBTAG00000015940) #27	SCGB1D (ENSBTAG00000040070) #28	INCENP (ENSBTAG00000050061) #29	FTH1 (ENSBTAG00000011184) ##31	BEST1 (ENSBTAG00000011186) #32	RAB3IL1 (ENSBTAG00000015745) #33	FADS3 (ENSBTAG00000015511) #34	FADS2 (ENSBTAG00000015505) #35	FADS1 (ENSBTAG00000022294) #36	ENSBTAG00000053898 #37	FEN1 (ENSBTAG00000000064)	TMEM258 (ENSBTAG00000032557)
Caprinae	ANCESTRAL SPECIES	20	ENSGT00940000160376 #7	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00390000002615	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.b #23	ENSGT00940000154902.bb.a #24	ENSGT00940000155073.b #25	ENSGT00950000183045.A.a.a #26	ENSGT00390000013802 #27	ENSGT00530000063866 #28	ENSGT00730000111073 #29	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a
Rambouillet Sheep	MODERN SPECIES	13	HNRNPUL2 (ENSOARG00020021145) #7	GNG3 (ENSOARG00020021111) #8	BSCL2 (ENSOARG00020021030) #9	LRRN4CL (ENSOARG00020021003) #10	UBXN1 (ENSOARG00020020882) #11	UQCC3 (ENSOARG00020020837) #12	CSKMT (ENSOARG00020020799) #14	C11orf98 (ENSOARG00020020766)	INTS5 (ENSOARG00020020736) #15	GANAB (ENSOARG00020019614) #16	B3GAT3 (ENSOARG00020019536) #17	ROM1 (ENSOARG00020019491) #18	EML3 (ENSOARG00020019331) #19	MTA2 (ENSOARG00020019166) #20	TUT1 (ENSOARG00020019099) #21	EEF1G (ENSOARG00020019042) #22	ENSOARG00020018899 #24	SCGB1A1 (ENSOARG00020018859) #25	ASRGL1 (ENSOARG00020018816) #26	ENSOARG00020018768 #27	ENSOARG00020018723 #28	INCENP (ENSOARG00020018586) #29	FTH1 (ENSOARG00020018402) ##31	BEST1 (ENSOARG00020018322) #32	RAB3IL1 (ENSOARG00020017922) #33	FADS3 (ENSOARG00020017693) #34	ENSOARG00020017431 #35	FADS1 (ENSOARG00020017320) #36	ENSOARG00020017287 #37	FEN1 (ENSOARG00020017260)	ENSOARG00020017205
Goat	DUPLICATION
Goat	MODERN SPECIES	1	ENSCHIG00000003392	LRRC9 (ENSCHIG00000025206)	PCNX4 (ENSCHIG00000027192)	DHRS7 (ENSCHIG00000026336)	ENSCHIG00000006564	ENSCHIG00000022625	SIX6 (ENSCHIG00000017541)	SIX1 (ENSCHIG00000024896)	SIX4 (ENSCHIG00000012309)	ENSCHIG00000022102	MNAT1 (ENSCHIG00000021930)	TRMT5 (ENSCHIG00000018801)	SLC38A6 (ENSCHIG00000020159)	TMEM30B (ENSCHIG00000009225)	PRKCH (ENSCHIG00000016844)	ENSCHIG00000018951 #22	HIF1A (ENSCHIG00000015613)	SNAPC1 (ENSCHIG00000011278)	SYT16 (ENSCHIG00000021144)	ENSCHIG00000006728	KCNH5 (ENSCHIG00000000501)	RHOJ (ENSCHIG00000016760)	GPHB5 (ENSCHIG00000025724)	ENSCHIG00000024045	PPP2R5E (ENSCHIG00000025432)	WDR89 (ENSCHIG00000013306)	SGPP1 (ENSCHIG00000020626)	ENSCHIG00000022808	SYNE2 (ENSCHIG00000017393)	ESR2 (ENSCHIG00000011683)	ENSCHIG00000026739
Goat	MODERN SPECIES	21	HNRNPUL2 (ENSCHIG00000020213) #7	GNG3 (ENSCHIG00000015824) #8	BSCL2 (ENSCHIG00000026480) #9	LRRN4CL (ENSCHIG00000009031) #10	UBXN1 (ENSCHIG00000006820) #11	UQCC3 (ENSCHIG00000018953) #12	CSKMT (ENSCHIG00000011409) #14	C11orf98 (ENSCHIG00000022514)	INTS5 (ENSCHIG00000013982) #15	GANAB (ENSCHIG00000022447) #16	ENSCHIG00000016332 #17	ROM1 (ENSCHIG00000010262) #18	EML3 (ENSCHIG00000021585) #19	MTA2 (ENSCHIG00000015501) #20	TUT1 (ENSCHIG00000006765) #21	ENSCHIG00000022487 #22	AHNAK (ENSCHIG00000015249) #23	ASRGL1 (ENSCHIG00000024873) #26	ENSCHIG00000018172 #27	ENSCHIG00000013354 #28	INCENP (ENSCHIG00000023449) #29	FTH1 (ENSCHIG00000018949) ##31	BEST1 (ENSCHIG00000005599) #32	RAB3IL1 (ENSCHIG00000018161) #33	FADS3 (ENSCHIG00000026956) #34	ENSCHIG00000015460 #35	FADS1 (ENSCHIG00000022314) #36	ENSCHIG00000013437 #37	FEN1 (ENSCHIG00000009155)	ENSCHIG00000018241	MYRF (ENSCHIG00000003036)
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000160376 #7	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00400000022873 #13	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000155073.b #25	ENSGT00950000183045.A.a.a #26	ENSGT00390000013802 #27	ENSGT00530000063866 #28	ENSGT00730000111073 #29	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.b.n.b ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000160376 #7	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00400000022873 #13	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000167720	ENSGT00950000183045.A.a.a #26	ENSGT00730000111073 #29	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a	ENSGT00390000010089.f
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000160376 #7	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00400000022873 #13	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000167720	ENSGT00950000183045.A.a.a #26	ENSGT00730000111073 #29	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.a.b ##34	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a
Dolphin	MODERN SPECIES	2428	HNRNPUL2 (ENSTTRG00000002475) #7	GNG3 (ENSTTRG00000002474) #8	ENSTTRG00000002473 #9	LRRN4CL (ENSTTRG00000002472) #10	UBXN1 (ENSTTRG00000002471) #11	UQCC3 (ENSTTRG00000002470) #12	METTL12 (ENSTTRG00000002469) #14	LBHD1 (ENSTTRG00000002468) #13	INTS5 (ENSTTRG00000002467) #15	GANAB (ENSTTRG00000002466) #16	B3GAT3 (ENSTTRG00000002465) #17	ROM1 (ENSTTRG00000002464) #18	EML3 (ENSTTRG00000002463) #19	MTA2 (ENSTTRG00000002461) #20	TUT1 (ENSTTRG00000002460) #21	EEF1G (ENSTTRG00000002459) #22
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000160376 #7	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00400000022873 #13	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000167720	ENSGT00950000183045.A.a.a #26	ENSGT00730000111073 #29	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.a ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a	ENSGT00390000010089.f
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000160376 #7	ENSGT01100000263497.B #8	ENSGT00390000011639 #9	ENSGT00940000162696 #10	ENSGT00940000156457 #11	ENSGT00390000001930 #12	ENSGT00510000049875 #14	ENSGT00390000002615	ENSGT00390000008374 #15	ENSGT00940000159139 #16	ENSGT00940000156954 #17	ENSGT00940000159921 #18	ENSGT00940000159589 #19	ENSGT01030000234573.B.c.b.b #20	ENSGT00940000159914 #21	ENSGT00390000007552.f #22	ENSGT00940000154902.bb.a #24	ENSGT00940000154902.bb.b #23	ENSGT00940000167720	ENSGT00950000183045.A.a.a #26	ENSGT00730000111073 #29	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.a ##31	ENSGT00940000158650 #32	ENSGT00940000159102 #33	ENSGT00950000182990.a.a.a.b.u.b #34	ENSGT00950000182990.a.a.a.b.u.a #35	ENSGT00950000182990.a.a.b.b #36	ENSGT00520000061410 #37	ENSGT00940000155807.a	ENSGT00390000010089.f
Narwhal	MODERN SPECIES	314	HNRNPUL2 (ENSMMNG00015019703) #7	GNG3 (ENSMMNG00015019682) #8	BSCL2 (ENSMMNG00015019637) #9	ENSMMNG00015019615 #10	UBXN1 (ENSMMNG00015019592) #11	UQCC3 (ENSMMNG00015019569) #12	CSKMT (ENSMMNG00015019549) #14	LBHD1 (ENSMMNG00015019506) #13	INTS5 (ENSMMNG00015019476) #15	GANAB (ENSMMNG00015019271) #16	B3GAT3 (ENSMMNG00015019182) #17	ROM1 (ENSMMNG00015019160) #18	EML3 (ENSMMNG00015019097) #19	MTA2 (ENSMMNG00015019012) #20	TUT1 (ENSMMNG00015018972) #21	EEF1G (ENSMMNG00015018940) #22	ENSMMNG00015018882 #23	ENSMMNG00015018842	ASRGL1 (ENSMMNG00015018816) #26	INCENP (ENSMMNG00015018796) #29	ENSMMNG00015018773	ENSMMNG00015018730 ##31	BEST1 (ENSMMNG00015018677) #32	RAB3IL1 (ENSMMNG00015018609) #33	FADS3 (ENSMMNG00015018534) #34	FADS2 (ENSMMNG00015018459) #35	FADS1 (ENSMMNG00015018422) #36	ENSMMNG00015018407 #37	FEN1 (ENSMMNG00015018398)	ENSMMNG00015018376	MYRF (ENSMMNG00015018267)
Beluga whale	MODERN SPECIES	7	HNRNPUL2 (ENSDLEG00000018363) #7	GNG3 (ENSDLEG00000018479) #8	BSCL2 (ENSDLEG00000018487) #9	LRRN4CL (ENSDLEG00000018503) #10	UBXN1 (ENSDLEG00000018521) #11	UQCC3 (ENSDLEG00000018687) #12	METTL12 (ENSDLEG00000018693) #14	CUNH11orf98 (ENSDLEG00000018700)	INTS5 (ENSDLEG00000018703) #15	GANAB (ENSDLEG00000018708) #16	B3GAT3 (ENSDLEG00000018722) #17	ROM1 (ENSDLEG00000018727) #18	EML3 (ENSDLEG00000018806) #19	MTA2 (ENSDLEG00000019734) #20	TUT1 (ENSDLEG00000019807) #21	EEF1G (ENSDLEG00000019824) #22	ENSDLEG00000019831 #24	ENSDLEG00000000042 #23	ENSDLEG00000000054	ASRGL1 (ENSDLEG00000000069) #26	INCENP (ENSDLEG00000000094) #29	ENSDLEG00000000149	FTH1 (ENSDLEG00000000166) ##31	ENSDLEG00000000215 #32	RAB3IL1 (ENSDLEG00000000259) #33	FADS3 (ENSDLEG00000000318) #34	FADS2 (ENSDLEG00000000450) #35	ENSDLEG00000000465 ##34	ENSDLEG00000000478 #37	FEN1 (ENSDLEG00000000484)	ENSDLEG00000000496
Vaquita	MODERN SPECIES	19	HNRNPUL2 (ENSPSNG00000019048) #7	GNG3 (ENSPSNG00000019000) #8	BSCL2 (ENSPSNG00000018928) #9	LRRN4CL (ENSPSNG00000018896) #10	UBXN1 (ENSPSNG00000018815) #11	ENSPSNG00000018693 #12	CSKMT (ENSPSNG00000018651) #14	LBHD1 (ENSPSNG00000018488) #13	INTS5 (ENSPSNG00000018449) #15	GANAB (ENSPSNG00000018146) #16	B3GAT3 (ENSPSNG00000018034) #17	ROM1 (ENSPSNG00000017989) #18	EML3 (ENSPSNG00000017777) #19	MTA2 (ENSPSNG00000017617) #20	TUT1 (ENSPSNG00000017538) #21	EEF1G (ENSPSNG00000017454) #22	ENSPSNG00000017355 #24	ENSPSNG00000017310	ASRGL1 (ENSPSNG00000017251) #26	INCENP (ENSPSNG00000017213) #29	ENSPSNG00000017157	ENSPSNG00000017070 #32	RAB3IL1 (ENSPSNG00000016838) #33	FADS3 (ENSPSNG00000016702) #34	FADS2 (ENSPSNG00000016437) #35	FADS1 (ENSPSNG00000016302) #36	ENSPSNG00000016241 #37	FEN1 (ENSPSNG00000016213)	TMEM258 (ENSPSNG00000016151)	MYRF (ENSPSNG00000015696)	DAGLA (ENSPSNG00000015388)
Sperm whale	MODERN SPECIES	41	HNRNPUL2 (ENSPCTG00005016628) #7	GNG3 (ENSPCTG00005016574) #8	BSCL2 (ENSPCTG00005016458) #9	LRRN4CL (ENSPCTG00005016435) #10	UBXN1 (ENSPCTG00005016314) #11	UQCC3 (ENSPCTG00005016275) #12	CSKMT (ENSPCTG00005016237) #14	CUNH11orf98 (ENSPCTG00005016037) #13	INTS5 (ENSPCTG00005016002) #15	GANAB (ENSPCTG00005015548) #16	B3GAT3 (ENSPCTG00005015447) #17	ROM1 (ENSPCTG00005015418) #18	EML3 (ENSPCTG00005014675) #19	MTA2 (ENSPCTG00005014433) #20	TUT1 (ENSPCTG00005014312) #21	EEF1G (ENSPCTG00005014278) #22	ENSPCTG00005014260 #24
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	19	HNRNPUL2 (ENSBMSG00010008413) #7	GNG3 (ENSBMSG00010008393) #8	BSCL2 (ENSBMSG00010008336) #9	LRRN4CL (ENSBMSG00010008324) #10	UBXN1 (ENSBMSG00010008293) #11	UQCC3 (ENSBMSG00010008263) #12	CSKMT (ENSBMSG00010008233) #14	LBHD1 (ENSBMSG00010008202) #13	INTS5 (ENSBMSG00010008179) #15	GANAB (ENSBMSG00010008146) #16	B3GAT3 (ENSBMSG00010008115) #17	ROM1 (ENSBMSG00010008104) #18	EML3 (ENSBMSG00010008039) #19	MTA2 (ENSBMSG00010007990) #20	TUT1 (ENSBMSG00010007969) #21	EEF1G (ENSBMSG00010007952) #22	AHNAK (ENSBMSG00010007921) #23	SCGB1A1 (ENSBMSG00010007899) #25	ASRGL1 (ENSBMSG00010007885) #26	ENSBMSG00010007872 #27	ENSBMSG00010007862 #28	ENSBMSG00010007851	INCENP (ENSBMSG00010007722) #29	ENSBMSG00010007674	ENSBMSG00010007637 ##31	BEST1 (ENSBMSG00010007587) #32	RAB3IL1 (ENSBMSG00010007458) #33	ENSBMSG00010007377 #34	FADS2 (ENSBMSG00010007330) #35	FADS1 (ENSBMSG00010007282) #36	ENSBMSG00010007270 #37
Blue whale	MODERN SPECIES	40	MSN (ENSBMSG00010016394)	VSIG4 (ENSBMSG00010016469)	HEPH (ENSBMSG00010016714)	ENSBMSG00010017291	ENSBMSG00010017314	EDA2R (ENSBMSG00010017338)	AR (ENSBMSG00010017403)	ENSBMSG00010017616	YIPF6 (ENSBMSG00010017661)	STARD8 (ENSBMSG00010017725)	EFNB1 (ENSBMSG00010017761)	PJA1 (ENSBMSG00010017812)	NALF2 (ENSBMSG00010017839)	EDA (ENSBMSG00010017861)	AWAT2 (ENSBMSG00010017987)	ENSBMSG00010018011 #22	OTUD6A (ENSBMSG00010018026)	DGAT2L6 (ENSBMSG00010018039)	P2RY4 (ENSBMSG00010018084)	ARR3 (ENSBMSG00010018119)	PDZD11 (ENSBMSG00010018341)	KIF4A (ENSBMSG00010018369)	GDPD2 (ENSBMSG00010018409)	DLG3 (ENSBMSG00010018530)	ENSBMSG00010019038	SLC7A3 (ENSBMSG00010019048)	ENSBMSG00010019077	SNX12 (ENSBMSG00010019093)	FOXO4 (ENSBMSG00010019131)	ENSBMSG00010019173	IL2RG (ENSBMSG00010019221)