Pecora	ANCESTRAL SPECIES	7	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00910000148817	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00930000151992	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00910000148817	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36	ENSGT00390000007640.b #37
Siberian musk deer	MODERN SPECIES	118							LRRC4C (ENSMMSG00000011762) #13	API5 (ENSMMSG00000011658) #14	TTC17 (ENSMMSG00000011534) #15	HSD17B12 (ENSMMSG00000011385) #16	ALKBH3 (ENSMMSG00000011296) #17	ACCSL (ENSMMSG00000011043) #18	ACCS (ENSMMSG00000010941) #19	EXT2 (ENSMMSG00000010833) #20	ALX4 (ENSMMSG00000010786) #21	CD82 (ENSMMSG00000010721) #22	TSPAN18 (ENSMMSG00000010679) #23	TP53I11 (ENSMMSG00000010631) #24	PRDM11 (ENSMMSG00000010568) #25	SYT13 (ENSMMSG00000010526) #26	CHST1 (ENSMMSG00000010503) #27	SLC35C1 (ENSMMSG00000010467) #28	CRY2 (ENSMMSG00000010187) #29	MAPK8IP1 (ENSMMSG00000010074) #30	FREY1 (ENSMMSG00000010042) #31	PEX16 (ENSMMSG00000009980) #32	LARGE2 (ENSMMSG00000009888) #33	PHF21A (ENSMMSG00000009796) #34	CREB3L1 (ENSMMSG00000009753) #35	DGKZ (ENSMMSG00000008653) #36	MDK (ENSMMSG00000008497) #37
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00910000148817	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36	ENSGT00390000007640.b #37
Caprinae	ANCESTRAL SPECIES	6	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT01090000260040.b.b.b.b.b.a	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00910000148817	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36	ENSGT00390000007640.b #37
Rambouillet Sheep	MODERN SPECIES	6	RAG2 (ENSOARG00020017591)	ENSOARG00020017606	ENSOARG00020017646	ENSOARG00020017700	LRRC4C (ENSOARG00020017737) #13	ENSOARG00020017753	TTC17 (ENSOARG00020017912) #15	ENSOARG00020019476 #16	ALKBH3 (ENSOARG00020019554) #17	C11orf96 (ENSOARG00020019596)	ENSOARG00020019621	ENSOARG00020019654 #18	ACCS (ENSOARG00020019774) #19	EXT2 (ENSOARG00020019927) #20	ALX4 (ENSOARG00020020142) #21	CD82 (ENSOARG00020020176) #22	TSPAN18 (ENSOARG00020020280) #23	TP53I11 (ENSOARG00020020367) #24	PRDM11 (ENSOARG00020020437) #25	SYT13 (ENSOARG00020020545) #26	SLC35C1 (ENSOARG00020020655) #28	CRY2 (ENSOARG00020020700) #29	MAPK8IP1 (ENSOARG00020021179) #30	FREY1 (ENSOARG00020021284) #31	PEX16 (ENSOARG00020021321) #32	LARGE2 (ENSOARG00020021424) #33	PHF21A (ENSOARG00020021567) #34	CREB3L1 (ENSOARG00020021730) #35	DGKZ (ENSOARG00020021820) #36	MDK (ENSOARG00020022725) #37	CHRM4 (ENSOARG00020022796)
Goat	MODERN SPECIES	6	TRAF6 (ENSCHIG00000015888)	RAG1 (ENSCHIG00000013265)	RAG2 (ENSCHIG00000009200)	ENSCHIG00000010847	LRRC4C (ENSCHIG00000005885) #13	ENSCHIG00000008612	API5 (ENSCHIG00000015343) #14	TTC17 (ENSCHIG00000011579) #15	HSD17B12 (ENSCHIG00000011795) #16	ALKBH3 (ENSCHIG00000017579) #17	ENSCHIG00000016194	ACCSL (ENSCHIG00000010057) #18	ACCS (ENSCHIG00000026253) #19	EXT2 (ENSCHIG00000026007) #20	ALX4 (ENSCHIG00000010305) #21	CD82 (ENSCHIG00000015537) #22	TSPAN18 (ENSCHIG00000024681) #23	TP53I11 (ENSCHIG00000017884) #24	PRDM11 (ENSCHIG00000003161) #25	SYT13 (ENSCHIG00000027048) #26	CHST1 (ENSCHIG00000008696) #27	SLC35C1 (ENSCHIG00000021201) #28	CRY2 (ENSCHIG00000023621) #29	MAPK8IP1 (ENSCHIG00000015720) #30	PEX16 (ENSCHIG00000011489) #32	LARGE2 (ENSCHIG00000021453) #33	PHF21A (ENSCHIG00000023760) #34	CREB3L1 (ENSCHIG00000008753) #35	DGKZ (ENSCHIG00000018020) #36	MDK (ENSCHIG00000020969) #37	CHRM4 (ENSCHIG00000006372)
Bovinae	ANCESTRAL SPECIES	26	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36	ENSGT00390000007640.b.d.a #37
Bos	ANCESTRAL SPECIES	25	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT00950000185588	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36	ENSGT00390000007640.b.d.a #37
Bos_a	ANCESTRAL SPECIES	36	ENSGT00940000155426.r	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT00950000185588	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36	ENSGT00390000007640.b.d.a #37
Wild yak	MODERN SPECIES	1748									HSD17B12 (ENSBMUG00000012520) #16	ALKBH3 (ENSBMUG00000012545) #17	C11orf96 (ENSBMUG00000012555)	ACCSL (ENSBMUG00000012620) #18	ACCS (ENSBMUG00000012650) #19	EXT2 (ENSBMUG00000012685) #20	ALX4 (ENSBMUG00000012706) #21	CD82 (ENSBMUG00000012774) #22	TSPAN18 (ENSBMUG00000012833) #23	TP53I11 (ENSBMUG00000012889) #24	PRDM11 (ENSBMUG00000012966) #25	SYT13 (ENSBMUG00000013020) #26
Domestic yak	MODERN SPECIES	4	RAG1 (ENSBGRG00000023505)	RAG2 (ENSBGRG00000023532)	IFTAP (ENSBGRG00000023557)	LRRC4C (ENSBGRG00000023742) #13	ENSBGRG00000023797	API5 (ENSBGRG00000023877) #14	TTC17 (ENSBGRG00000024330) #15	ENSBGRG00000024524	HSD17B12 (ENSBGRG00000024610) #16	ALKBH3 (ENSBGRG00000024727) #17	ENSBGRG00000024758	ENSBGRG00000024769 #18	ACCS (ENSBGRG00000024813) #19	EXT2 (ENSBGRG00000024837) #20	ALX4 (ENSBGRG00000024852) #21	CD82 (ENSBGRG00000024889) #22	TSPAN18 (ENSBGRG00000024939) #23	ENSBGRG00000024991 #24	PRDM11 (ENSBGRG00000008834) #25	SYT13 (ENSBGRG00000009098) #26	CHST1 (ENSBGRG00000009183) #27	SLC35C1 (ENSBGRG00000009196) #28	CRY2 (ENSBGRG00000009273) #29	MAPK8IP1 (ENSBGRG00000009722) #30	FREY1 (ENSBGRG00000009996) #31	PEX16 (ENSBGRG00000010057) #32	LARGE2 (ENSBGRG00000010390) #33	PHF21A (ENSBGRG00000010552) #34	CREB3L1 (ENSBGRG00000010789) #35	DGKZ (ENSBGRG00000011064) #36	ENSBGRG00000012888 #37
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405 #13	ENSGT00950000185588	ENSGT00390000010991 #14	ENSGT00390000006196 #15	ENSGT00940000154860 #16	ENSGT00940000157226 #17	ENSGT00390000016821	ENSGT00940000162841 #18	ENSGT00940000161101 #19	ENSGT00940000156620 #20	ENSGT00940000159662 #21	ENSGT00940000158481 #22	ENSGT00940000157667 #23	ENSGT00390000017249 #24	ENSGT00940000159837 #25	ENSGT00940000160226 #26	ENSGT00940000161262 #27	ENSGT00390000013315 #28	ENSGT00940000159073 #29	ENSGT00940000157089.B #30	ENSGT00390000018235 #31	ENSGT00390000017790 #32	ENSGT00940000158758 #33	ENSGT00940000156124 #34	ENSGT00940000159848 #35	ENSGT00940000156152 #36	ENSGT00390000007640.b.d.a #37
Hybrid Bos Indicus	MODERN SPECIES	6	IFTAP (ENSBIXG00005016428)	LRRC4C (ENSBIXG00005016515) #13	API5 (ENSBIXG00005016658) #14	ENSBIXG00005002693	TTC17 (ENSBIXG00005006754) #15	ENSBIXG00005016808	ENSBIXG00005016812	HSD17B12 (ENSBIXG00005007044) #16	ALKBH3 (ENSBIXG00005016885) #17	ENSBIXG00005016904	C11orf96 (ENSBIXG00005002746)	ACCSL (ENSBIXG00005016927) #18	ACCS (ENSBIXG00005002769) #19	EXT2 (ENSBIXG00005017227) #20	ALX4 (ENSBIXG00005017263) #21	CD82 (ENSBIXG00005017303) #22	ENSBIXG00005017320	TSPAN18 (ENSBIXG00005017360) #23	TP53I11 (ENSBIXG00005006359) #24	PRDM11 (ENSBIXG00005002842) #25	SYT13 (ENSBIXG00005017503) #26	ENSBIXG00005017575	CHST1 (ENSBIXG00005017606) #27	SLC35C1 (ENSBIXG00005002867) #28	CRY2 (ENSBIXG00005017785) #29	MAPK8IP1 (ENSBIXG00005017891) #30	FREY1 (ENSBIXG00005017911) #31	PEX16 (ENSBIXG00005005656) #32	LARGE2 (ENSBIXG00005018050) #33	PHF21A (ENSBIXG00005018097) #34	CREB3L1 (ENSBIXG00005002939) #35
Cow	MODERN SPECIES	6	TRAF6 (ENSBTAG00000036009)	RAG1 (ENSBTAG00000040293)	RAG2 (ENSBTAG00000031309)	IFTAP (ENSBTAG00000021611)	LRRC4C (ENSBTAG00000007324) #13	ENSBTAG00000051591	API5 (ENSBTAG00000014474) #14	TTC17 (ENSBTAG00000031299) #15	HSD17B12 (ENSBTAG00000000087) #16	ALKBH3 (ENSBTAG00000009518) #17	C15H11orf96 (ENSBTAG00000045822)	ACCSL (ENSBTAG00000012053) #18	ACCS (ENSBTAG00000008465) #19	EXT2 (ENSBTAG00000019644) #20	ALX4 (ENSBTAG00000027563) #21	CD82 (ENSBTAG00000031252) #22	TSPAN18 (ENSBTAG00000021484) #23	ENSBTAG00000053859	TP53I11 (ENSBTAG00000017228) #24	PRDM11 (ENSBTAG00000006443) #25	SYT13 (ENSBTAG00000001703) #26	ENSBTAG00000054083	CHST1 (ENSBTAG00000003721) #27	SLC35C1 (ENSBTAG00000003199) #28	CRY2 (ENSBTAG00000021223) #29	MAPK8IP1 (ENSBTAG00000000317) #30	FREY1 (ENSBTAG00000027562) #31	PEX16 (ENSBTAG00000003126) #32	LARGE2 (ENSBTAG00000009607) #33	PHF21A (ENSBTAG00000009611) #34	CREB3L1 (ENSBTAG00000006143) #35
American bison	MODERN SPECIES	2600														EXT2 (ENSBBBG00000022926) #20	ALX4 (ENSBBBG00000008407) #21	CD82 (ENSBBBG00000022777) #22	TSPAN18 (ENSBBBG00000022737) #23
Yarkand deer	MODERN SPECIES		TRAF6 (ENSCHYG00000017116)	RAG1 (ENSCHYG00000017160)	RAG2 (ENSCHYG00000017191)	IFTAP (ENSCHYG00000000051)	LRRC4C (ENSCHYG00000000081) #13	ENSCHYG00000000090	API5 (ENSCHYG00000000112) #14	ENSCHYG00000000150 #15	HSD17B12 (ENSCHYG00000000235) #16	ALKBH3 (ENSCHYG00000000269) #17	C11orf96 (ENSCHYG00000000279)	ACCSL (ENSCHYG00000000316) #18	ACCS (ENSCHYG00000000358) #19	EXT2 (ENSCHYG00000000443) #20	ALX4 (ENSCHYG00000000519) #21	CD82 (ENSCHYG00000000545) #22	TSPAN18 (ENSCHYG00000000585) #23	ENSCHYG00000000622 #24	ENSCHYG00000000654	PRDM11 (ENSCHYG00000000644) #25	SYT13 (ENSCHYG00000000666) #26	CHST1 (ENSCHYG00000000673) #27	SLC35C1 (ENSCHYG00000000680) #28	CRY2 (ENSCHYG00000000698) #29	MAPK8IP1 (ENSCHYG00000000750) #30	FREY1 (ENSCHYG00000000819) #31	PEX16 (ENSCHYG00000000848) #32	LARGE2 (ENSCHYG00000000920) #33	PHF21A (ENSCHYG00000000954) #34	CREB3L1 (ENSCHYG00000001030) #35	DGKZ (ENSCHYG00000001154) #36