Murinae	ANCESTRAL SPECIES	3	ENSGT00390000008429 #7	ENSGT00390000001505 #8	ENSGT00940000157524 #9	ENSGT00390000004490 #10	ENSGT00950000182945.b.b #11	ENSGT00940000156150 #12	ENSGT00940000156645 #13	ENSGT00390000000252 #14	ENSGT00390000012418 #15	ENSGT00390000002177 #16	ENSGT00940000160815 #17	ENSGT00940000155306.a #18	ENSGT00940000156060 #19	ENSGT00940000159085 #20	ENSGT00550000074972 #21	ENSGT00940000155241 #22	ENSGT00940000157726 #23	ENSGT00390000018312 #24	ENSGT00390000014621 #25	ENSGT00420000029923 #26	ENSGT00390000014570 #27	ENSGT00940000154875 #28	ENSGT00940000157863 #29	ENSGT00940000154836 #30	ENSGT00940000156310 #31	ENSGT00390000015725 #32	ENSGT00940000160077 #33	ENSGT01070000253775.a.d.a.b.b #34	ENSGT00390000005336 #35	ENSGT00940000158931 #36	ENSGT00940000163668 #37
Mus	ANCESTRAL SPECIES	4	ENSGT00390000008429 #7	ENSGT00390000001505 #8	ENSGT00940000157524 #9	ENSGT00390000004490 #10	ENSGT00950000182945.b.b #11	ENSGT00940000156150 #12	ENSGT00940000156645 #13	ENSGT00390000000252 #14	ENSGT00390000012418 #15	ENSGT00390000002177 #16	ENSGT00940000160815 #17	ENSGT00940000155306.a #18	ENSGT00940000156060 #19	ENSGT00940000159085 #20	ENSGT00550000074972 #21	ENSGT00940000155241 #22	ENSGT00940000157726 #23	ENSGT00390000018312 #24	ENSGT00390000014621 #25	ENSGT00420000029923 #26	ENSGT00390000014570 #27	ENSGT00940000154875 #28	ENSGT00940000157863 #29	ENSGT00940000154836 #30	ENSGT00940000156310 #31	ENSGT00390000015725 #32	ENSGT00940000160077 #33	ENSGT01070000253775.a.d.a.b.b #34	ENSGT00390000005336 #35	ENSGT00940000158931 #36	ENSGT00940000163668 #37
Shrew mouse	MODERN SPECIES	1	Dag1 (MGP_PahariEiJ_G0015547) #7	Nicn1 (MGP_PahariEiJ_G0015548) #8	Amt (MGP_PahariEiJ_G0015549) #9	MGP_PahariEiJ_G0015550 #10	Rhoa (MGP_PahariEiJ_G0015551) #11	MGP_PahariEiJ_G0015552 #12	Usp4 (MGP_PahariEiJ_G0015553) #13	1700102P08Rik (MGP_PahariEiJ_G0015554) #14	Iho1 (MGP_PahariEiJ_G0015555) #15	BC048562 (MGP_PahariEiJ_G0015556) #16	Klhdc8b (MGP_PahariEiJ_G0015557) #17	Ccdc71 (MGP_PahariEiJ_G0015558) #18	MGP_PahariEiJ_G0015559 #19	Usp19 (MGP_PahariEiJ_G0015560) #20	Qars (MGP_PahariEiJ_G0015561) #21	Qrich1 (MGP_PahariEiJ_G0015562) #22	Impdh2 (MGP_PahariEiJ_G0015563) #23	Ndufaf3 (MGP_PahariEiJ_G0015564) #24	Dalrd3 (MGP_PahariEiJ_G0015565) #25	Wdr6 (MGP_PahariEiJ_G0015566) #26	P4htm (MGP_PahariEiJ_G0015567) #27	Arih2 (MGP_PahariEiJ_G0015568) #28	Slc25a20 (MGP_PahariEiJ_G0015569) #29	Prkar2a (MGP_PahariEiJ_G0015570) #30	Ip6k2 (MGP_PahariEiJ_G0015571) #31	Nckipsd (MGP_PahariEiJ_G0015572) #32	Celsr3 (MGP_PahariEiJ_G0015573) #33	Slc26a6 (MGP_PahariEiJ_G0015574) #34	Tmem89 (MGP_PahariEiJ_G0015575) #35	Uqcrc1 (MGP_PahariEiJ_G0015576) #36	Col7a1 (MGP_PahariEiJ_G0015577) #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000008429 #7	ENSGT00390000001505 #8	ENSGT00940000157524 #9	ENSGT00390000004490 #10	ENSGT00950000182945.b.b #11	ENSGT00940000156150 #12	ENSGT00940000156645 #13	ENSGT00390000000252 #14	ENSGT00390000012418 #15	ENSGT00390000002177 #16	ENSGT00940000160815 #17	ENSGT00940000155306.a #18	ENSGT00940000156060 #19	ENSGT00940000159085 #20	ENSGT00550000074972 #21	ENSGT00940000155241 #22	ENSGT00940000157726 #23	ENSGT00390000018312 #24	ENSGT00390000014621 #25	ENSGT00420000029923 #26	ENSGT00390000014570 #27	ENSGT00940000154875 #28	ENSGT00940000157863 #29	ENSGT00940000154836 #30	ENSGT00940000156310 #31	ENSGT00390000015725 #32	ENSGT00940000160077 #33	ENSGT01070000253775.a.d.a.b.b #34	ENSGT00390000005336 #35	ENSGT00940000158931 #36	ENSGT00940000163668 #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000008429 #7	ENSGT00390000001505 #8	ENSGT00940000157524 #9	ENSGT00390000004490 #10	ENSGT00950000182945.b.b.s #11	ENSGT00940000156150 #12	ENSGT00940000156645 #13	ENSGT00390000000252 #14	ENSGT00390000012418 #15	ENSGT00390000002177 #16	ENSGT00940000160815 #17	ENSGT00940000155306.a #18	ENSGT00940000156060 #19	ENSGT00940000159085 #20	ENSGT00550000074972 #21	ENSGT00940000155241 #22	ENSGT00940000157726 #23	ENSGT00390000018312 #24	ENSGT00390000014621 #25	ENSGT00420000029923 #26	ENSGT00390000014570 #27	ENSGT00940000154875 #28	ENSGT00940000157863 #29	ENSGT00940000154836 #30	ENSGT00940000156310 #31	ENSGT00390000015725 #32	ENSGT00940000160077 #33	ENSGT01070000253775.a.d.a.b.b #34	ENSGT00390000005336 #35	ENSGT00940000158931 #36	ENSGT00940000163668 #37
Mus_C	ANCESTRAL SPECIES	23	ENSGT00390000008429 #7	ENSGT00390000001505 #8	ENSGT00940000157524 #9	ENSGT00390000004490 #10	ENSGT00950000182945.b.b.s #11	ENSGT00940000156150 #12	ENSGT00940000156645 #13	ENSGT00390000000252 #14	ENSGT00390000012418 #15	ENSGT00390000002177 #16	ENSGT00940000160815 #17	ENSGT00940000155306.a #18	ENSGT00940000156060 #19	ENSGT00940000159085 #20	ENSGT00550000074972 #21	ENSGT00940000155241 #22	ENSGT00940000157726 #23	ENSGT00390000018312 #24	ENSGT00390000014621 #25	ENSGT00420000029923 #26	ENSGT00390000014570 #27	ENSGT00940000154875.m #28	ENSGT00940000157863 #29	ENSGT00940000154836 #30	ENSGT00940000156310 #31	ENSGT00390000015725 #32	ENSGT00940000160077 #33	ENSGT01070000253775.a.d.a.b.b #34	ENSGT00390000005336 #35	ENSGT00940000158931 #36	ENSGT00940000163668 #37
Steppe mouse	MODERN SPECIES	2942	Nicn1 (ENSMSIG00000024241) #8	Amt (ENSMSIG00000024252) #9	Tcta (ENSMSIG00000024280) #10	Rhoa (ENSMSIG00000024290) #11	Gpx1 (ENSMSIG00000024310) #12	Usp4 (ENSMSIG00000024333) #13	ENSMSIG00000024427	1700102P08Rik (ENSMSIG00000024429) #14	Iho1 (ENSMSIG00000024437) #15	BC048562 (ENSMSIG00000024449) #16	Klhdc8b (ENSMSIG00000024460) #17	Ccdc71 (ENSMSIG00000024477) #18	Lamb2 (ENSMSIG00000024492) #19	Usp19 (ENSMSIG00000024529) #20	Qars (ENSMSIG00000024675) #21	Qrich1 (ENSMSIG00000024752) #22	Impdh2 (ENSMSIG00000000088) #23	Ndufaf3 (ENSMSIG00000000202) #24	Dalrd3 (ENSMSIG00000000255) #25	Wdr6 (ENSMSIG00000000332) #26	P4htm (ENSMSIG00000000386) #27	ENSMSIG00000000455 #28	Slc25a20 (ENSMSIG00000000560) #29	Prkar2a (ENSMSIG00000000599) #30	ENSMSIG00000000689	Ip6k2 (ENSMSIG00000000718) #31	Nckipsd (ENSMSIG00000000798) #32	Celsr3 (ENSMSIG00000000863) #33	Slc26a6 (ENSMSIG00000001152) #34	Tmem89 (ENSMSIG00000001240) #35	Uqcrc1 (ENSMSIG00000001256) #36
spretus	MODERN SPECIES	18	Dag1 (MGP_SPRETEiJ_G0033824) #7	Nicn1 (MGP_SPRETEiJ_G0033825) #8	Amt (MGP_SPRETEiJ_G0033826) #9	MGP_SPRETEiJ_G0033827 #12	Tcta (MGP_SPRETEiJ_G0033828) #10	MGP_SPRETEiJ_G0033829	Usp4 (MGP_SPRETEiJ_G0033830) #13	1700102P08Rik (MGP_SPRETEiJ_G0033831) #14	Iho1 (MGP_SPRETEiJ_G0033832) #15	BC048562 (MGP_SPRETEiJ_G0033833) #16	Klhdc8b (MGP_SPRETEiJ_G0033834) #17	Ccdc71 (MGP_SPRETEiJ_G0033835) #18	Lamb2 (MGP_SPRETEiJ_G0033836) #19	Usp19 (MGP_SPRETEiJ_G0033837) #20	Qars (MGP_SPRETEiJ_G0033838) #21	Qrich1 (MGP_SPRETEiJ_G0033839) #22	Impdh2 (MGP_SPRETEiJ_G0033840) #23	Ndufaf3 (MGP_SPRETEiJ_G0033841) #24	Dalrd3 (MGP_SPRETEiJ_G0033842) #25	Wdr6 (MGP_SPRETEiJ_G0033843) #26	P4htm (MGP_SPRETEiJ_G0033844) #27	Arih2 (MGP_SPRETEiJ_G0033845) #28	Slc25a20 (MGP_SPRETEiJ_G0033846) #29	Prkar2a (MGP_SPRETEiJ_G0033847) #30	Ip6k2 (MGP_SPRETEiJ_G0033848) #31	Nckipsd (MGP_SPRETEiJ_G0033849) #32	Celsr3 (MGP_SPRETEiJ_G0033850) #33	Slc26a6 (MGP_SPRETEiJ_G0033851) #34	Tmem89 (MGP_SPRETEiJ_G0033852) #35	Uqcrc1 (MGP_SPRETEiJ_G0033853) #36	Col7a1 (MGP_SPRETEiJ_G0033854) #37
Mouse	MODERN SPECIES	18	Dag1 (ENSMUSG00000039952) #7	Nicn1 (ENSMUSG00000032606) #8	Amt (ENSMUSG00000032607) #9	Tcta (ENSMUSG00000039461) #10	Rhoa (ENSMUSG00000007815) #11	Gpx1 (ENSMUSG00000063856) #12	Usp4 (ENSMUSG00000032612) #13	1700102P08Rik (ENSMUSG00000032611) #14	Iho1 (ENSMUSG00000047220) #15	BC048562 (ENSMUSG00000050641) #16	Klhdc8b (ENSMUSG00000032609) #17	Ccdc71 (ENSMUSG00000049305) #18	Lamb2 (ENSMUSG00000052911) #19	Usp19 (ENSMUSG00000006676) #20	Qars (ENSMUSG00000032604) #21	Qrich1 (ENSMUSG00000006673) #22	Impdh2 (ENSMUSG00000062867) #23	Ndufaf3 (ENSMUSG00000070283) #24	Dalrd3 (ENSMUSG00000019039) #25	Wdr6 (ENSMUSG00000066357) #26	P4htm (ENSMUSG00000006675) #27	Arih2 (ENSMUSG00000064145) #28	Slc25a20 (ENSMUSG00000032602) #29	Prkar2a (ENSMUSG00000032601) #30	Ip6k2 (ENSMUSG00000032599) #31	Nckipsd (ENSMUSG00000032598) #32	Celsr3 (ENSMUSG00000023473) #33	Slc26a6 (ENSMUSG00000023259) #34	Tmem89 (ENSMUSG00000025652) #35	Uqcrc1 (ENSMUSG00000025651) #36	Col7a1 (ENSMUSG00000025650) #37
Ryukyu mouse	MODERN SPECIES	18	Dag1 (MGP_CAROLIEiJ_G0032679) #7	Nicn1 (MGP_CAROLIEiJ_G0032680) #8	Amt (MGP_CAROLIEiJ_G0032681) #9	Tcta (MGP_CAROLIEiJ_G0032682) #10	MGP_CAROLIEiJ_G0032683	MGP_CAROLIEiJ_G0032684 #12	Usp4 (MGP_CAROLIEiJ_G0032685) #13	1700102P08Rik (MGP_CAROLIEiJ_G0032686) #14	Iho1 (MGP_CAROLIEiJ_G0032687) #15	BC048562 (MGP_CAROLIEiJ_G0032688) #16	Klhdc8b (MGP_CAROLIEiJ_G0032689) #17	Ccdc71 (MGP_CAROLIEiJ_G0032690) #18	Lamb2 (MGP_CAROLIEiJ_G0032691) #19	MGP_CAROLIEiJ_G0032692	Qars (MGP_CAROLIEiJ_G0032693) #21	Qrich1 (MGP_CAROLIEiJ_G0032694) #22	Impdh2 (MGP_CAROLIEiJ_G0032695) #23	MGP_CAROLIEiJ_G0032696	Dalrd3 (MGP_CAROLIEiJ_G0032697) #25	Wdr6 (MGP_CAROLIEiJ_G0032698) #26	P4htm (MGP_CAROLIEiJ_G0032699) #27	Arih2 (MGP_CAROLIEiJ_G0032700) #28	Slc25a20 (MGP_CAROLIEiJ_G0032701) #29	Prkar2a (MGP_CAROLIEiJ_G0032702) #30	Ip6k2 (MGP_CAROLIEiJ_G0032703) #31	Nckipsd (MGP_CAROLIEiJ_G0032704) #32	Celsr3 (MGP_CAROLIEiJ_G0032705) #33	Slc26a6 (MGP_CAROLIEiJ_G0032706) #34	Tmem89 (MGP_CAROLIEiJ_G0032707) #35	Uqcrc1 (MGP_CAROLIEiJ_G0032708) #36	Col7a1 (MGP_CAROLIEiJ_G0032709) #37
Rat	MODERN SPECIES	18	Bsn (ENSRNOG00000030714)	Dag1 (ENSRNOG00000019400) #7	Nicn1 (ENSRNOG00000049083) #8	Amt (ENSRNOG00000050214) #9	Rhoa (ENSRNOG00000050519) #11	Gpx1 (ENSRNOG00000048812) #12	LOC498675 (ENSRNOG00000046155) #14	Usp4 (ENSRNOG00000054863) #13	Iho1 (ENSRNOG00000048919) #15	LOC680045 (ENSRNOG00000047468) #16	Klhdc8b (ENSRNOG00000047867) #17	Ccdc71 (ENSRNOG00000048718) #18	Lamb2 (ENSRNOG00000047768) #19	Usp19 (ENSRNOG00000049531) #20	Qars1 (ENSRNOG00000060912) #21	Qrich1 (ENSRNOG00000025071) #22	Impdh2 (ENSRNOG00000031965) #23	Ndufaf3 (ENSRNOG00000020068) #24	Dalrd3 (ENSRNOG00000020159) #25	Wdr6 (ENSRNOG00000020185) #26	P4htm (ENSRNOG00000020249) #27	Arih2 (ENSRNOG00000031827) #28	Slc25a20 (ENSRNOG00000020288) #29	Prkar2a (ENSRNOG00000020284) #30	Ip6k2 (ENSRNOG00000020361) #31	Nckipsd (ENSRNOG00000031816) #32	Celsr3 (ENSRNOG00000053889) #33	Slc26a6 (ENSRNOG00000020450) #34	Tmem89 (ENSRNOG00000031141) #35	Uqcrc1 (ENSRNOG00000032134) #36	Col7a1 (ENSRNOG00000020579)