Gnathostomata	ANCESTRAL SPECIES	14			ENSGT00940000159713	ENSGT00940000155492	ENSGT00950000183201.b.b.b.b.b.b.b	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.D	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153972.A	ENSGT00940000158517	ENSGT01030000234590.A.a.b	ENSGT00940000166029	ENSGT00390000011810	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000154174	ENSGT01030000234598.b.a.b	ENSGT00940000159621
Euteleostomi	ANCESTRAL SPECIES	68	ENSGT00940000157297	ENSGT00940000159803	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000166620	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a	ENSGT00940000166318	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000167491	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT00940000164773	ENSGT00940000165703	ENSGT00390000002414	ENSGT00940000156163	ENSGT00940000159690	ENSGT01100000265889
Actinopterygii	ANCESTRAL SPECIES	5	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000166267	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987	ENSGT00940000153123.A	ENSGT00390000011810	ENSGT01100000263551.b.a	ENSGT00940000163454	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000167491	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT00940000164773	ENSGT00940000165703	ENSGT00390000002414	ENSGT01030000234513.B.a	ENSGT01050000244864.B.a	ENSGT00940000160693
Neopterygii	ANCESTRAL SPECIES	50	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000166267	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987	ENSGT00940000153123.A	ENSGT00390000011810	ENSGT00990000205159	ENSGT00940000163454.b	ENSGT00940000163454.a	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000167491	ENSGT00390000002197	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT00940000164773	ENSGT00940000165703	ENSGT00390000002414	ENSGT01030000234513.B.a	ENSGT01050000244864.B.a
Osteoglossocephalai	ANCESTRAL SPECIES	12	ENSGT00940000156576	ENSGT00940000161147	ENSGT00390000012961	ENSGT00940000168882	ENSGT00510000047611	ENSGT00940000157424	ENSGT00940000174692	ENSGT00940000159817	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074.e.a	ENSGT00940000160158	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A.a	ENSGT00940000158517	ENSGT00390000000303	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT01050000244891.B
Clupeocephala	ANCESTRAL SPECIES	86	ENSGT00530000063666.a	ENSGT01050000244888.b.a.c.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b.a	ENSGT00940000162717	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.d	ENSGT00940000166318.b	ENSGT00940000154633.jd	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516.u	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000167491	ENSGT00390000002197	ENSGT00940000153902.b.b	ENSGT00980000202377	ENSGT00390000018389	ENSGT01090000260082.d.a.a.c	ENSGT00940000155516.v	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220
Euteleosteomorpha	ANCESTRAL SPECIES	270											ENSGT01000000214857	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544
Acanthomorphata	ANCESTRAL SPECIES	80											ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000166330	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b.d	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b.d	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36
Anabantaria	ANCESTRAL SPECIES	1	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000163443 #7	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT01100000263492.b.b.b.a.b.a.a.b.b.d	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Anabantoidei	ANCESTRAL SPECIES		ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000163443 #7	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00950000182934.a.a
Climbing perch	MODERN SPECIES		ENSATEG00000027313 #7	ENSATEG00000029524 #8	ENSATEG00000029304 #9	ENSATEG00000028834 #10	ENSATEG00000029565 #11	slit2 (ENSATEG00000018568) #12	ENSATEG00000018496 #13	ncapg (ENSATEG00000018482) #14	fam184b (ENSATEG00000018472) #15	ENSATEG00000018462 #16	ENSATEG00000018416 #17	ENSATEG00000018400 #18	ENSATEG00000018384 #19	ENSATEG00000018369 #20	ENSATEG00000029708 #21	ENSATEG00000018334 #22	ENSATEG00000018317 #23	ENSATEG00000028481 #24	ENSATEG00000018277 #25	serping1 (ENSATEG00000018244) #26	doc2d (ENSATEG00000018216) #27	ENSATEG00000018160 #28	ENSATEG00000018122 #29	ENSATEG00000018111 #30	ENSATEG00000018022 #31	ENSATEG00000017967 #32	spock3 (ENSATEG00000017945) #33	ugt8 (ENSATEG00000017927) #34	ENSATEG00000017903 #35	ENSATEG00000017870 #36	mettl14 (ENSATEG00000017832) #37
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000009975	ITLN1 (ENSBSLG00000009982) #8	ENSBSLG00000009995 #8	ENSBSLG00000010027 #8	slit2 (ENSBSLG00000010094) #12	ENSBSLG00000011644 #13	ncapg (ENSBSLG00000011841) #14	fam184b (ENSBSLG00000012293) #15	ENSBSLG00000012319 #16	APBB2 (ENSBSLG00000013273) #17	ENSBSLG00000013670	rbm47 (ENSBSLG00000013713) #18	ENSBSLG00000013767 #19	cntf (ENSBSLG00000013773) #20	ankrd49 (ENSBSLG00000013789) #21	ENSBSLG00000013793 #22	ENSBSLG00000013795	cdk2ap2 (ENSBSLG00000013806) #23	aip (ENSBSLG00000013814) #24	tmem134 (ENSBSLG00000013830) #25	serping1 (ENSBSLG00000013845) #26	doc2d (ENSBSLG00000013901) #27	ENSBSLG00000013918 #28	ENSBSLG00000013933 #29	DLC1 (ENSBSLG00000013981) #31	SLC44A1 (ENSBSLG00000014605) #32	spock3 (ENSBSLG00000014816) #33	ugt8 (ENSBSLG00000014839) #34	ENSBSLG00000014859 #35	ENSBSLG00000014911 #36	mettl14 (ENSBSLG00000014933) #37
Zig-zag eel	MODERN SPECIES		ENSMAMG00000027789	ENSMAMG00000019496	slit2 (ENSMAMG00000019395) #12	ENSMAMG00000025964 #13	ENSMAMG00000019338 #13	ENSMAMG00000026994	ENSMAMG00000027717	ncapg (ENSMAMG00000019295) #14	fam184b (ENSMAMG00000019282) #15	APBB2 (ENSMAMG00000019213) #17	ENSMAMG00000019195	RBM47 (ENSMAMG00000019143) #18	ENSMAMG00000019124 #19	ENSMAMG00000027049 #20	ENSMAMG00000027762 #21	ENSMAMG00000019054 #22	ENSMAMG00000028480 #23	ENSMAMG00000027400	ENSMAMG00000019020 #24	ENSMAMG00000019010 #25	serping1 (ENSMAMG00000018978) #26	doc2d (ENSMAMG00000018968) #27	ENSMAMG00000018912 #28	ENSMAMG00000018858 #29	ENSMAMG00000018759 #31	ENSMAMG00000018744 #32	spock3 (ENSMAMG00000018735) #33	ugt8 (ENSMAMG00000018719) #34	ENSMAMG00000018700 #35	ENSMAMG00000018662 #36	mettl14 (ENSMAMG00000018629) #37
Carangaria	ANCESTRAL SPECIES		ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00940000156077.g.b	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000172773
Turbot	MODERN SPECIES	20	rhoh (ENSSMAG00000010448)	CHRNA9 (ENSSMAG00000010403)	ENSSMAG00000010389	ENSSMAG00000010291	slit2 (ENSSMAG00000009998) #12	ENSSMAG00000009963 #13	ncapg (ENSSMAG00000009929) #14	fam184b (ENSSMAG00000009902) #15	ENSSMAG00000009871 #16	APBB2 (ENSSMAG00000009829) #17	ENSSMAG00000009801	RBM47 (ENSSMAG00000009744) #18	ENSSMAG00000009695 #19	ENSSMAG00000009675 #20	ENSSMAG00000029468 #21	ENSSMAG00000009656 #22	ENSSMAG00000009641 #23	ENSSMAG00000009628 #24	ENSSMAG00000009611 #25	serping1 (ENSSMAG00000009595) #26	doc2d (ENSSMAG00000009575) #27	ENSSMAG00000009562 #28	ENSSMAG00000009537 #29	ENSSMAG00000009448 #31	ENSSMAG00000009405 #32	spock3 (ENSSMAG00000009372) #33	ugt8 (ENSSMAG00000009307) #34	ENSSMAG00000009213 #35	ENSSMAG00000009162 #36	mettl14 (ENSSMAG00000009127) #37	ENSSMAG00000034718
Tongue sole	MODERN SPECIES	19	POLG2 (ENSCSEG00000008112)	srp68 (ENSCSEG00000008135)	evpla (ENSCSEG00000008174)	ten1 (ENSCSEG00000008197)	acox1 (ENSCSEG00000008205)	RHBDF2 (ENSCSEG00000008251)	aanat1 (ENSCSEG00000008294)	UBE2O (ENSCSEG00000008301)	SPHK1 (ENSCSEG00000008348)	cygb2 (ENSCSEG00000008356)	ENSCSEG00000008381	slc25a38b (ENSCSEG00000008670)	ttc26 (ENSCSEG00000008692)	ubn2a (ENSCSEG00000008734)	ankrd49 (ENSCSEG00000008786) #21	GPR83 (ENSCSEG00000008789) #22	aip (ENSCSEG00000008795) #24	cdk2ap2 (ENSCSEG00000008805) #23	tmem134 (ENSCSEG00000008815) #25	doc2d (ENSCSEG00000008834) #27	ENSCSEG00000008864 #28	ENSCSEG00000008911 #29	DLC1 (ENSCSEG00000008933) #31	SLC44A1 (ENSCSEG00000008984) #32	ENSCSEG00000009027	spock3 (ENSCSEG00000009038) #33	ugt8 (ENSCSEG00000009068) #34	ENSCSEG00000009083 #35	ENSCSEG00000009097 #36	PRSS12 (ENSCSEG00000009112) #36	mettl14 (ENSCSEG00000009185) #37
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Seriola	ANCESTRAL SPECIES	29	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828.bb #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Greater amberjack	MODERN SPECIES	101	ENSSDUG00000022605	slit2 (ENSSDUG00000022630) #12	ENSSDUG00000022649 #13	ENSSDUG00000022652	ncapg (ENSSDUG00000022654) #14	fam184b (ENSSDUG00000022659) #15	ENSSDUG00000022662 #16	APBB2 (ENSSDUG00000022666) #17	ENSSDUG00000022677	rbm47 (ENSSDUG00000022684) #18	ENSSDUG00000000083 #19	ENSSDUG00000000112	cntf (ENSSDUG00000000128) #20	ENSSDUG00000000152	ankrd49 (ENSSDUG00000000192) #21	GPR83 (ENSSDUG00000000202) #22	cdk2ap2 (ENSSDUG00000000209) #23	aip (ENSSDUG00000000221) #24	tmem134 (ENSSDUG00000000262) #25	serping1 (ENSSDUG00000000275) #26	doc2d (ENSSDUG00000000318) #27	ENSSDUG00000000372 #28	ENSSDUG00000000395 #29	DLC1 (ENSSDUG00000000411) #31	SLC44A1 (ENSSDUG00000000443) #32	spock3 (ENSSDUG00000000546) #33	ugt8 (ENSSDUG00000000562) #34	ENSSDUG00000000591 #35	PRSS12 (ENSSDUG00000000645) #36	mettl14 (ENSSDUG00000000688) #37	ENSSDUG00000000699
Yellowtail amberjack	MODERN SPECIES	2974	rhoh (ENSSLDG00000002482)	CHRNA9 (ENSSLDG00000002511)	ENSSLDG00000002547	slit2 (ENSSLDG00000002730) #12	ENSSLDG00000002907 #13	ENSSLDG00000002925	ncapg (ENSSLDG00000002943) #14	ENSSLDG00000002967 #16	APBB2 (ENSSLDG00000002995) #17	rbm47 (ENSSLDG00000003109) #18	ENSSLDG00000003245 #19	ENSSLDG00000003287	cntf (ENSSLDG00000003316) #20	ENSSLDG00000003345	ankrd49 (ENSSLDG00000003390) #21	GPR83 (ENSSLDG00000003405) #22	cdk2ap2 (ENSSLDG00000003447) #23	aip (ENSSLDG00000003465) #24	tmem134 (ENSSLDG00000003494) #25	serping1 (ENSSLDG00000003519) #26	ENSSLDG00000003566 #27	ENSSLDG00000003590 #27	ENSSLDG00000003609 #28	LONRF1 (ENSSLDG00000003645) #29	DLC1 (ENSSLDG00000003703) #31	ENSSLDG00000003807	SLC44A1 (ENSSLDG00000003838) #32	spock3 (ENSSLDG00000003911) #33	ugt8 (ENSSLDG00000003939) #34	ENSSLDG00000003978 #35	ENSSLDG00000004076
Barramundi perch	MODERN SPECIES	108	ENSLCAG00010001569	ENSLCAG00010001572	ENSLCAG00010001586	ENSLCAG00010001600 #8	slit2 (ENSLCAG00010001635) #12	ENSLCAG00010001756 #13	ENSLCAG00010001761	ENSLCAG00010001764	ncapg (ENSLCAG00010001774) #14	ENSLCAG00010001793 #15	APBB2 (ENSLCAG00010001813) #17	rbm47 (ENSLCAG00010001829) #18	ENSLCAG00010001840 #19	ENSLCAG00010001850 #20	ankrd49 (ENSLCAG00010001851) #21	GPR83 (ENSLCAG00010001855) #22	cdk2ap2 (ENSLCAG00010001859) #23	aip (ENSLCAG00010001863) #24	tmem134 (ENSLCAG00010001871) #25	serping1 (ENSLCAG00010001877) #26	doc2d (ENSLCAG00010001889) #27	ENSLCAG00010001903 #28	ENSLCAG00010001933 #29	DLC1 (ENSLCAG00010001936) #31	SLC44A1 (ENSLCAG00010001947) #32	spock3 (ENSLCAG00010001958) #33	ugt8 (ENSLCAG00010001962) #34	ENSLCAG00010001971 #35	PRSS12 (ENSLCAG00010001981) #36	mettl14 (ENSLCAG00010001982) #37	ENSLCAG00010001987
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Tetraodontidae	ANCESTRAL SPECIES	40	ENSGT00940000156077.g.b	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000166330	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000177159.c.a.b	ENSGT00940000172773	ENSGT00950000182934.a.a
Tetraodon	MODERN SPECIES	26	ENSTNIG00000013985	ENSTNIG00000014165	MATN3 (ENSTNIG00000014166)	ENSTNIG00000000004	inhbab (ENSTNIG00000014168)	ENSTNIG00000001198	ENSTNIG00000000608	ENSTNIG00000001074	hccsb (ENSTNIG00000014170)	ENSTNIG00000001067	ENSTNIG00000014171	ENSTNIG00000014172	ENSTNIG00000014173	cacna1fb (ENSTNIG00000014174)	ankrd49 (ENSTNIG00000014179) #21	GPR83 (ENSTNIG00000014180) #22	cdk2ap2 (ENSTNIG00000014181) #23	aip (ENSTNIG00000014182) #24	HACE1 (ENSTNIG00000014201)	bves (ENSTNIG00000014202)	ENSTNIG00000014204	ENSTNIG00000014236	ENSTNIG00000014237	tfap2b (ENSTNIG00000014239)	tfap2b (ENSTNIG00000014240)	ENSTNIG00000014241	PPP1R14A (ENSTNIG00000014242)	tiprl (ENSTNIG00000014243)	blnk (ENSTNIG00000001501)	dntt (ENSTNIG00000017078)	ENSTNIG00000017079
Fugu	MODERN SPECIES	8	ENSTRUG00000027797	ENSTRUG00000020797	ENSTRUG00000031417 #13	ENSTRUG00000023675	ncapg (ENSTRUG00000013625) #14	fam184b (ENSTRUG00000032924) #15	ENSTRUG00000022344 #16	APBB2 (ENSTRUG00000013779) #17	ENSTRUG00000026603	rbm47 (ENSTRUG00000014050) #18	ENSTRUG00000028351 #19	ENSTRUG00000023679 #20	ENSTRUG00000005602	ankrd49 (ENSTRUG00000027461) #21	ENSTRUG00000026164	GPR83 (ENSTRUG00000003044) #22	ENSTRUG00000003697	cdk2ap2 (ENSTRUG00000030905) #23	aip (ENSTRUG00000004014) #24	doc2d (ENSTRUG00000004693) #27	CABP2 (ENSTRUG00000004846) #28	ENSTRUG00000004874 #29	DLC1 (ENSTRUG00000005140) #31	spock3 (ENSTRUG00000032115) #33	ugt8 (ENSTRUG00000031541) #34	ENSTRUG00000033419	NDST4 (ENSTRUG00000000320) #35	PRSS12 (ENSTRUG00000000348) #36	mettl14 (ENSTRUG00000000401) #37	ENSTRUG00000026317	ENSTRUG00000032089
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Ballan wrasse	MODERN SPECIES	279						znf207b (ENSLBEG00000009466)	ENSLBEG00000009421	ENSLBEG00000009156	septin9b (ENSLBEG00000008643)	rbm47 (ENSLBEG00000008436) #18	ENSLBEG00000008373 #19	ENSLBEG00000008353	cntf (ENSLBEG00000008342) #20	ENSLBEG00000008314	ankrd49 (ENSLBEG00000008295) #21	GPR83 (ENSLBEG00000008254) #22	cdk2ap2 (ENSLBEG00000008213) #23	aip (ENSLBEG00000008184) #24	ENSLBEG00000008161	ENSLBEG00000008141	mettl14 (ENSLBEG00000008085) #37	PRSS12 (ENSLBEG00000007988) #36	NDST4 (ENSLBEG00000007900) #35	ugt8 (ENSLBEG00000007855) #34
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000157037.a.c.b	ENSGT00940000163443 #7	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000155857.e.a	ENSGT00940000157037.a.c.b	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Perciformes_a	ANCESTRAL SPECIES		ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Pike perch	MODERN SPECIES	69	ENSSLUG00000020190	DRD5 (ENSSLUG00000020169)	ITLN1 (ENSSLUG00000020161) #8	slit2 (ENSSLUG00000012413) #12	ENSSLUG00000012059 #13	ENSSLUG00000012053 #13	ENSSLUG00000012049	ncapg (ENSSLUG00000011981) #14	fam184b (ENSSLUG00000011965) #15	APBB2 (ENSSLUG00000011937) #17	ENSSLUG00000011913	rbm47 (ENSSLUG00000011897) #18	ENSSLUG00000011888 #19	ENSSLUG00000011881 #20	ankrd49 (ENSSLUG00000011876) #21	GPR83 (ENSSLUG00000011874) #22
Channel bull blenny	MODERN SPECIES		ENSCGOG00000005580	ENSCGOG00000005421	ENSCGOG00000005388	ITLN1 (ENSCGOG00000005276) #8	slit2 (ENSCGOG00000003258) #12	ENSCGOG00000003184 #13	ncapg (ENSCGOG00000002940) #14	fam184b (ENSCGOG00000002921) #15	ENSCGOG00000002883 #16	APBB2 (ENSCGOG00000002569) #17	ENSCGOG00000002566	rbm47 (ENSCGOG00000002564) #18	ENSCGOG00000002562 #19	ENSCGOG00000002559 #20	ankrd49 (ENSCGOG00000002556) #21	GPR83 (ENSCGOG00000002553) #22	cdk2ap2 (ENSCGOG00000002544) #23	aip (ENSCGOG00000002540) #24	tmem134 (ENSCGOG00000002533) #25	serping1 (ENSCGOG00000002518) #26	doc2d (ENSCGOG00000002516) #27	ENSCGOG00000002502 #28	LONRF1 (ENSCGOG00000002496) #29	ENSCGOG00000002493	DLC1 (ENSCGOG00000002484) #31	SLC44A1 (ENSCGOG00000002257) #32	spock3 (ENSCGOG00000002254) #33	ugt8 (ENSCGOG00000002253) #34	ENSCGOG00000002252	ENSCGOG00000001419 #35	PRSS12 (ENSCGOG00000001351) #36
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263495.A.a.a.n	ENSGT00940000156950.b	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Lumpfish	MODERN SPECIES		ENSCLMG00005005372	ENSCLMG00005005376	ENSCLMG00005005377	IGFBP4 (ENSCLMG00005005378)	SMARCE1 (ENSCLMG00005005381)	ccr7 (ENSCLMG00005005401)	TNS4 (ENSCLMG00005005404)	KRT222 (ENSCLMG00005005407)	krt97 (ENSCLMG00005005409)	RIMS1 (ENSCLMG00005005411)	ENSCLMG00005005417	EEF1A1 (ENSCLMG00005006408)	ENSCLMG00005006812	GRIA2 (ENSCLMG00005006817)	ankrd49 (ENSCLMG00005006946) #21	GPR83 (ENSCLMG00005006948) #22	cdk2ap2 (ENSCLMG00005006949) #23	aip (ENSCLMG00005006952) #24	tmem134 (ENSCLMG00005006953) #25	serping1 (ENSCLMG00005006957) #26	doc2d (ENSCLMG00005007038) #27	ENSCLMG00005007039 #28	ENSCLMG00005007041 #29	DLC1 (ENSCLMG00005007045) #31	ENSCLMG00005007356	SLC44A1 (ENSCLMG00005007359) #32	spock3 (ENSCLMG00005007452) #33	ugt8 (ENSCLMG00005007454) #34	ENSCLMG00005007460 #35	PRSS12 (ENSCLMG00005002812) #36	mettl14 (ENSCLMG00005002849) #37
Stickleback	MODERN SPECIES	4	ENSGACG00000018001	mettl14 (ENSGACG00000018009) #37	PRSS12 (ENSGACG00000018013) #36	ENSGACG00000018022 #35	ugt8 (ENSGACG00000018024) #34	spock3 (ENSGACG00000018028) #33	SLC44A1 (ENSGACG00000018031) #32	DLC1 (ENSGACG00000018034) #31	LONRF1 (ENSGACG00000018037) #29	ENSGACG00000018047 #28	doc2d (ENSGACG00000018051) #27	serping1 (ENSGACG00000018054) #26	tmem134 (ENSGACG00000018056) #25	aip (ENSGACG00000018060) #24	cdk2ap2 (ENSGACG00000018065) #23	GPR83 (ENSGACG00000018066) #22	ankrd49 (ENSGACG00000018070) #21	GRIA2 (ENSGACG00000018071)	ENSGACG00000018088	eef1a1b (ENSGACG00000018090)	ENSGACG00000018097	RIMS1 (ENSGACG00000018104)	krt97 (ENSGACG00000018108)	ENSGACG00000018109	KRT222 (ENSGACG00000018110)	ENSGACG00000018111	ccr7 (ENSGACG00000018112)	SMARCE1 (ENSGACG00000018114)	IGFBP4 (ENSGACG00000018120)	ENSGACG00000018123	ENSGACG00000018124
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000157037.a.c.b	ENSGT00940000163443 #7	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000177159.c.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000157037.a.c.b	ENSGT00940000163443 #7	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT01090000261355	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000172773
European seabass	MODERN SPECIES	20	ENSDLAG00005026193	ENSDLAG00005027874	ENSDLAG00005026201 #8	ENSDLAG00005026202 #8	slit2 (ENSDLAG00005026214) #12	ENSDLAG00005026228 #13	ncapg (ENSDLAG00005026238) #14	fam184b (ENSDLAG00005026245) #15	ENSDLAG00005026249 #16	APBB2 (ENSDLAG00005026256) #17	ENSDLAG00005026267	RBM47 (ENSDLAG00005026268) #18	ENSDLAG00005029357 #19	ENSDLAG00005031545 #20	ENSDLAG00005029200 #21	ENSDLAG00005026273 #22	ENSDLAG00005034414 #23	ENSDLAG00005026276 #24	ENSDLAG00005026277 #25	serping1 (ENSDLAG00005026279) #26	doc2d (ENSDLAG00005026280) #27	ENSDLAG00005026281 #28	ENSDLAG00005026283 #29	ENSDLAG00005026287 #31	ENSDLAG00005026294 #32	spock3 (ENSDLAG00005026459) #33	ugt8 (ENSDLAG00005026297) #34	ENSDLAG00005026298 #35	ENSDLAG00005026300 #36	mettl14 (ENSDLAG00005026301) #37	ENSDLAG00005027483
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005006207	BEST3 (ENSLCRG00005006211)	nots (ENSLCRG00005006215)	cct2 (ENSLCRG00005006220)	ENSLCRG00005006228	ENSLCRG00005006234 #13	ENSLCRG00005006238	ncapg (ENSLCRG00005006269) #14	fam184b (ENSLCRG00005007942) #15	ENSLCRG00005007948 #16	APBB2 (ENSLCRG00005007955) #17	rbm47 (ENSLCRG00005008223) #18	ENSLCRG00005008232 #19	ENSLCRG00005008238 #20	ankrd49 (ENSLCRG00005008241) #21	GPR83 (ENSLCRG00005008247) #22	cdk2ap2 (ENSLCRG00005008253) #23	aip (ENSLCRG00005008260) #24	tmem134 (ENSLCRG00005008265) #25	serping1 (ENSLCRG00005008270) #26	doc2d (ENSLCRG00005008275) #27	ENSLCRG00005008277 #28	ENSLCRG00005008280 #29	ENSLCRG00005008285 #29	DLC1 (ENSLCRG00005008299) #31	SLC44A1 (ENSLCRG00005008681) #32	spock3 (ENSLCRG00005008886) #33	spock3 (ENSLCRG00005008890) #33	ugt8 (ENSLCRG00005008894) #34	ENSLCRG00005008898 #35	PRSS12 (ENSLCRG00005008922) #36
Gilthead seabream	MODERN SPECIES		ENSSAUG00010021021	ENSSAUG00010021018	ITLN1 (ENSSAUG00010021015) #8	slit2 (ENSSAUG00010019509) #12	ENSSAUG00010019434 #13	ENSSAUG00010019433	ncapg (ENSSAUG00010019397) #14	fam184b (ENSSAUG00010019391) #15	ENSSAUG00010019388 #16	APBB2 (ENSSAUG00010018997) #17	ENSSAUG00010018989	rbm47 (ENSSAUG00010018982) #18	ENSSAUG00010018980 #19	ENSSAUG00010018978 #20	ankrd49 (ENSSAUG00010018976) #21	GPR83 (ENSSAUG00010018974) #22	cdk2ap2 (ENSSAUG00010018970) #23	aip (ENSSAUG00010018966) #24	tmem134 (ENSSAUG00010018962) #25	serping1 (ENSSAUG00010018956) #26	doc2d (ENSSAUG00010018953) #27	ENSSAUG00010018950 #28	ENSSAUG00010018949 #29	DLC1 (ENSSAUG00010018938) #31	SLC44A1 (ENSSAUG00010018918) #32	spock3 (ENSSAUG00010018917) #33	ugt8 (ENSSAUG00010018916) #34	NDST4 (ENSSAUG00010018887) #35	PRSS12 (ENSSAUG00010018882) #36	mettl14 (ENSSAUG00010018877) #37	ENSSAUG00010018874
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000163443 #7	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00940000156077.g.b	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000163443 #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000172773
Turquoise killifish	MODERN SPECIES	1611	DNAL4 (ENSNFUG00015005636)	Nfu_g_1_018275 (ENSNFUG00015005644)	pla2g6 (ENSNFUG00015000287)	ENSNFUG00015000414 #13	ENSNFUG00015000423	ENSNFUG00015000431	ENSNFUG00015000436 #13	ncapg (ENSNFUG00015000473) #14	FAM184B (ENSNFUG00015000562) #15	ENSNFUG00015000597 #16	APBB2 (ENSNFUG00015000632) #17	RBM47 (ENSNFUG00015000673) #18	ZFP91 (ENSNFUG00015000683) #19	Nfu_g_1_018191 (ENSNFUG00015000697) #20	ANKRD49 (ENSNFUG00015000702) #21	GPR83 (ENSNFUG00015000709) #22	cdk2ap2 (ENSNFUG00015000721) #23	aip (ENSNFUG00015000731) #24	TMEM134 (ENSNFUG00015000746) #25	serping1 (ENSNFUG00015000759) #26	doc2d (ENSNFUG00015000765) #27	ENSNFUG00015000774	ENSNFUG00015000780 #28	LONRF1 (ENSNFUG00015000785) #29	DLC1 (ENSNFUG00015000810) #31	SLC44A1A (ENSNFUG00015000886)	spock3 (ENSNFUG00015000913) #33	ugt8 (ENSNFUG00015000921) #34	NDST4 (ENSNFUG00015000947) #35	ENSNFUG00015001048	ENSNFUG00015001052
Mangrove rivulus	MODERN SPECIES		ENSKMAG00000000074	ENSKMAG00000000075	itln3 (ENSKMAG00000000076) #7	slit2 (ENSKMAG00000000077) #12	ENSKMAG00000000078 #13	ncapg (ENSKMAG00000000079) #14	fam184b (ENSKMAG00000000080) #15	ENSKMAG00000000081	ENSKMAG00000000082 #16	APBB2 (ENSKMAG00000000083) #17	rbm47 (ENSKMAG00000000084) #18	ENSKMAG00000000085 #19	ENSKMAG00000000086	cntf (ENSKMAG00000000087) #20	ankrd49 (ENSKMAG00000000088) #21	GPR83 (ENSKMAG00000000089) #22	cdk2ap2 (ENSKMAG00000000090) #23	aip (ENSKMAG00000000091) #24	tmem134 (ENSKMAG00000000092) #25	serping1 (ENSKMAG00000000093) #26	doc2d (ENSKMAG00000000094) #27	ENSKMAG00000000095 #28	ENSKMAG00000000096 #29	DLC1 (ENSKMAG00000000097) #31	SLC44A1 (ENSKMAG00000000098) #32	spock3 (ENSKMAG00000000099) #33	ugt8 (ENSKMAG00000000100) #34	ENSKMAG00000000101 #35	PRSS12 (ENSKMAG00000000102) #36	mettl14 (ENSKMAG00000000103) #37	ENSKMAG00000000104
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.ob.a ##17	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000163443 #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.ob.a ##17	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000163443 #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.ob.a ##17	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
NAME_6	ANCESTRAL SPECIES	4	ENSGT00940000163443 #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.ob.a ##17	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Amazon molly	MODERN SPECIES	296	itln3 (ENSPFOG00000009348) #7	slit2 (ENSPFOG00000008688) #12	ENSPFOG00000008607 #13	ncapg (ENSPFOG00000008411) #14	fam184b (ENSPFOG00000024529) #15	ENSPFOG00000008367 #16	APBB2 (ENSPFOG00000008167) #17	ENSPFOG00000024775	ENSPFOG00000008041	rbm47 (ENSPFOG00000007997) #18	ENSPFOG00000007955 #19	ENSPFOG00000007950	cntf (ENSPFOG00000007947) #20	ENSPFOG00000007935	ankrd49 (ENSPFOG00000007925) #21	GPR83 (ENSPFOG00000007868) #22	cdk2ap2 (ENSPFOG00000007836) #23	aip (ENSPFOG00000007751) #24	tmem134 (ENSPFOG00000007689) #25	serping1 (ENSPFOG00000007612) #26	doc2d (ENSPFOG00000007517) #27	ENSPFOG00000007477 #28	ENSPFOG00000007312 #29	DLC1 (ENSPFOG00000007028) #31	SLC44A1 (ENSPFOG00000006837) #32	spock3 (ENSPFOG00000006689) #33	ugt8 (ENSPFOG00000006587) #34	ENSPFOG00000006177 #35	PRSS12 (ENSPFOG00000005977) #36	mettl14 (ENSPFOG00000005875) #37	ENSPFOG00000022092
Sailfin molly	MODERN SPECIES	236	ENSPLAG00000023596	itln3 (ENSPLAG00000023658) #7	slit2 (ENSPLAG00000023771) #12	ENSPLAG00000023823 #13	ncapg (ENSPLAG00000023836) #14	ENSPLAG00000023843	ENSPLAG00000023855 #16	ENSPLAG00000002029 ##17	ENSPLAG00000002040 #17	ENSPLAG00000002053	rbm47 (ENSPLAG00000002072) #18	ENSPLAG00000002081	ENSPLAG00000002093 #19	ENSPLAG00000002099 #20	ankrd49 (ENSPLAG00000002104) #21	GPR83 (ENSPLAG00000002121) #22	cdk2ap2 (ENSPLAG00000002137) #23	aip (ENSPLAG00000002153) #24	tmem134 (ENSPLAG00000002167) #25	serping1 (ENSPLAG00000002181) #26	doc2d (ENSPLAG00000002217) #27	ENSPLAG00000000035 #28	ENSPLAG00000002253 #29	DLC1 (ENSPLAG00000002301) #31	ENSPLAG00000002324	SLC44A1 (ENSPLAG00000002343) #32	spock3 (ENSPLAG00000002369) #33	ugt8 (ENSPLAG00000002381) #34
Guppy	MODERN SPECIES	439	ENSPREG00000007812	itln3 (ENSPREG00000007822) #7	slit2 (ENSPREG00000007911) #12	ENSPREG00000008200 #13	ncapg (ENSPREG00000008240) #14	fam184b (ENSPREG00000008279) #15	ENSPREG00000008319 #16	APBB2 (ENSPREG00000008369) #17	ENSPREG00000008411 #17	ENSPREG00000008421	rbm47 (ENSPREG00000008456) #18	ENSPREG00000008509 #19	ENSPREG00000008530	cntf (ENSPREG00000008534) #20	ankrd49 (ENSPREG00000008550) #21	GPR83 (ENSPREG00000008559) #22	cdk2ap2 (ENSPREG00000008571) #23	aip (ENSPREG00000008592) #24	tmem134 (ENSPREG00000008637) #25	serping1 (ENSPREG00000008703) #26	doc2d (ENSPREG00000008728) #27	ENSPREG00000008744 #28	ENSPREG00000008770 #29	DLC1 (ENSPREG00000008816) #31	SLC44A1 (ENSPREG00000008914) #32	spock3 (ENSPREG00000008964) #33	ugt8 (ENSPREG00000008999) #34	ENSPREG00000009037 #35	PRSS12 (ENSPREG00000009070) #36	mettl14 (ENSPREG00000009092) #37	ENSPREG00000009111
Platyfish	MODERN SPECIES	19	ENSXMAG00000023169	DRD5 (ENSXMAG00000020171)	itln3 (ENSXMAG00000009689) #7	slit2 (ENSXMAG00000009716) #12	ENSXMAG00000009809 #13	ncapg (ENSXMAG00000009813) #14	fam184b (ENSXMAG00000009837) #15	ENSXMAG00000029731 #16	APBB2 (ENSXMAG00000009844) #17	ENSXMAG00000009863	rbm47 (ENSXMAG00000009874) #18	ENSXMAG00000022840 #19	ENSXMAG00000024104	cntf (ENSXMAG00000009887) #20	ankrd49 (ENSXMAG00000009888) #21	GPR83 (ENSXMAG00000028552) #22	cdk2ap2 (ENSXMAG00000028441) #23	aip (ENSXMAG00000021976) #24	tmem134 (ENSXMAG00000009915) #25	serping1 (ENSXMAG00000009930) #26	doc2d (ENSXMAG00000009950) #27	ENSXMAG00000009968 #28	LONRF1 (ENSXMAG00000009974) #29	DLC1 (ENSXMAG00000009985) #31	SLC44A1 (ENSXMAG00000016107) #32	spock3 (ENSXMAG00000024327) #33	ugt8 (ENSXMAG00000023571) #34	ENSXMAG00000017808 #35	PRSS12 (ENSXMAG00000017835) #36	mettl14 (ENSXMAG00000017846) #37	ENSXMAG00000024313
NAME_4	ANCESTRAL SPECIES	70	ENSGT00940000163443 #7	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.ob.a ##17	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00950000182934.a.a
Mummichog	MODERN SPECIES	2223	DRD5 (ENSFHEG00000008249)	ITLN1 (ENSFHEG00000008210) #8	slit2 (ENSFHEG00000008163) #12	ENSFHEG00000008086 #13	ncapg (ENSFHEG00000008070) #14	fam184b (ENSFHEG00000008050) #15	ENSFHEG00000008022 #16	ENSFHEG00000007970 ##17	ENSFHEG00000007962 #17	ENSFHEG00000007947	rbm47 (ENSFHEG00000007938) #18	ENSFHEG00000007874 #19	ENSFHEG00000007870	cntf (ENSFHEG00000007866) #20	ankrd49 (ENSFHEG00000007855) #21	GPR83 (ENSFHEG00000007844) #22	cdk2ap2 (ENSFHEG00000007828) #23	aip (ENSFHEG00000007799) #24	tmem134 (ENSFHEG00000007796) #25	serping1 (ENSFHEG00000007777) #26	doc2d (ENSFHEG00000007738) #27	ENSFHEG00000007692 #28	ENSFHEG00000007672 #29	DLC1 (ENSFHEG00000007615) #31	SLC44A1 (ENSFHEG00000007484) #32	ENSFHEG00000007447 #33	ugt8 (ENSFHEG00000007425) #34
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	580				ENSCVAG00000019877	kdm4c (ENSCVAG00000019914)	ncapg (ENSCVAG00000019944) #14	fam184b (ENSCVAG00000019961) #15	ENSCVAG00000019991 #16	APBB2 (ENSCVAG00000020080) #17	ENSCVAG00000020094	rbm47 (ENSCVAG00000020144) #18	ENSCVAG00000020171 #19	ENSCVAG00000020156	cntf (ENSCVAG00000020180) #20	ankrd49 (ENSCVAG00000020186) #21	ENSCVAG00000020236 #22
Sheepshead minnow	MODERN SPECIES	751					zbtb20 (ENSCVAG00000009166)	slc25a5 (ENSCVAG00000009189)	ENSCVAG00000000263	cdc23 (ENSCVAG00000009231)	kif20a (ENSCVAG00000009238)	zgc:175280 (ENSCVAG00000009270)	CASR (ENSCVAG00000009575)	b4galt4 (ENSCVAG00000009602)	ENSCVAG00000009609	gsx1 (ENSCVAG00000009613)	ENSCVAG00000009621	GPR83 (ENSCVAG00000009640) #22	cdk2ap2 (ENSCVAG00000009654) #23	aip (ENSCVAG00000010060) #24	tmem134 (ENSCVAG00000010077) #25	ENSCVAG00000010087 #26	ENSCVAG00000010103 #27
Oryzias	ANCESTRAL SPECIES	15	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000166330	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00950000182934.a.a
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT00940000156077.g.b	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000166330	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00950000182934.a.a
Indian medaka	MODERN SPECIES	21	CHRNA9 (ENSOMEG00000011718)	ENSOMEG00000000281	ENSOMEG00000011698	slit2 (ENSOMEG00000011616) #12	ENSOMEG00000011250 #13	ncapg (ENSOMEG00000011164) #14	fam184b (ENSOMEG00000011066) #15	ENSOMEG00000010989 #16	APBB2 (ENSOMEG00000010924) #17	ENSOMEG00000010829	rbm47 (ENSOMEG00000010730) #18	ENSOMEG00000010644 #19	ENSOMEG00000010624	cntf (ENSOMEG00000010607) #20	ankrd49 (ENSOMEG00000010593) #21	GPR83 (ENSOMEG00000010580) #22	cdk2ap2 (ENSOMEG00000010495) #23	aip (ENSOMEG00000010546) #24	tmem134 (ENSOMEG00000010469) #25	serping1 (ENSOMEG00000010446) #26	doc2d (ENSOMEG00000010412) #27	ENSOMEG00000010328 #28	LONRF1 (ENSOMEG00000010248) #29	ENSOMEG00000010230 #30	lgi2b (ENSOMEG00000010219)	ccdc149b (ENSOMEG00000010189)	SOD3 (ENSOMEG00000010084)	dhx15 (ENSOMEG00000010067)	ENSOMEG00000010003	ENSOMEG00000009899	slc22a7b.1 (ENSOMEG00000009767)
Javanese ricefish	MODERN SPECIES		ENSOJAG00000000779	DRD5 (ENSOJAG00000000782)	slit2 (ENSOJAG00000001090) #12	ENSOJAG00000002426	ENSOJAG00000002444 #13	ncapg (ENSOJAG00000002472) #14	ENSOJAG00000002537 #15	ENSOJAG00000002547 #15	ENSOJAG00000002567 #16	APBB2 (ENSOJAG00000002694) #17	ENSOJAG00000003058	rbm47 (ENSOJAG00000003074) #18	ENSOJAG00000003102 #19	ENSOJAG00000003122 #20	ENSOJAG00000003131	GPR83 (ENSOJAG00000003142) #22	cdk2ap2 (ENSOJAG00000003156) #23	aip (ENSOJAG00000003163) #24	tmem134 (ENSOJAG00000003174) #25	serping1 (ENSOJAG00000003185) #26	doc2d (ENSOJAG00000003208) #27	ENSOJAG00000003228 #28	ENSOJAG00000003263 #29	DLC1 (ENSOJAG00000003313) #31	ENSOJAG00000003395	spock3 (ENSOJAG00000003474) #33	ugt8 (ENSOJAG00000003486) #34	ENSOJAG00000003664 #35	PRSS12 (ENSOJAG00000005001) #36	mettl14 (ENSOJAG00000005079) #37	ENSOJAG00000005127
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00740000116263	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000166330	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00950000182934.a.a
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000005721	slit2 (ENSORLG00000005750) #12	ENSORLG00000029006	ENSORLG00000027284 #13	ENSORLG00000027398	ncapg (ENSORLG00000005794) #14	fam184b (ENSORLG00000028239) #15	ENSORLG00000005813 #16	APBB2 (ENSORLG00000005834) #17	ENSORLG00000022661	rbm47 (ENSORLG00000005847) #18	ENSORLG00000027161 #19	ENSORLG00000023699	cntf (ENSORLG00000029072) #20	ankrd49 (ENSORLG00000024223) #21	GPR83 (ENSORLG00000025759) #22	cdk2ap2 (ENSORLG00000029903) #23	aip (ENSORLG00000005898) #24	tmem134 (ENSORLG00000005906) #25	serping1 (ENSORLG00000005916) #26	doc2d (ENSORLG00000023518) #27	ENSORLG00000005922 #28	ENSORLG00000005932 #29	DLC1 (ENSORLG00000005951) #31	ENSORLG00000005967	spock3 (ENSORLG00000005978) #33	ugt8 (ENSORLG00000005985) #34	ENSORLG00000023982	ENSORLG00000006029 #35	PRSS12 (ENSORLG00000022161) #36	mettl14 (ENSORLG00000006053) #37
Chinese medaka	DUPLICATION
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	1678																ENSOSIG00000012097 #22
Chinese medaka	MODERN SPECIES	2634																ENSOSIG00000004288 #22
Chinese medaka	MODERN SPECIES	96	n4bp2 (ENSOSIG00000015438)	rhoh (ENSOSIG00000015436)	CHRNA9 (ENSOSIG00000015435)	ENSOSIG00000015434	ENSOSIG00000015432	slit2 (ENSOSIG00000006578) #12	ENSOSIG00000006478 #13	ENSOSIG00000006477	ncapg (ENSOSIG00000006442) #14	fam184b (ENSOSIG00000006440) #15	APBB2 (ENSOSIG00000006436) #17	ENSOSIG00000006434	rbm47 (ENSOSIG00000006409) #18	ENSOSIG00000006400 #19	ankrd49 (ENSOSIG00000006399) #21	GPR83 (ENSOSIG00000006395) #22	cdk2ap2 (ENSOSIG00000006393) #23	aip (ENSOSIG00000006390) #24	tmem134 (ENSOSIG00000006388) #25	serping1 (ENSOSIG00000006387) #26	ENSOSIG00000006386 #27	ENSOSIG00000006385 #27	ENSOSIG00000006384 #28	ENSOSIG00000006383 #29	DLC1 (ENSOSIG00000005932) #31	ENSOSIG00000005912	spock3 (ENSOSIG00000005898) #33	ugt8 (ENSOSIG00000005896) #34	NDST4 (ENSOSIG00000004972) #35	PRSS12 (ENSOSIG00000004935) #36	mettl14 (ENSOSIG00000004359) #37
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000163443 #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT01090000261355	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000177159.c.a.b
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000155857.e.a	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000177159.c.a.b
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000157037.a.c.b	ENSGT00940000155857.e.a	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37	ENSGT00940000177159.c.b
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000019003	ENSAPEG00000018945	ITLN1 (ENSAPEG00000018922) #8	slit2 (ENSAPEG00000018808) #12	ENSAPEG00000018734 #13	ncapg (ENSAPEG00000018613) #14	fam184b (ENSAPEG00000018574) #15	ENSAPEG00000018510 #16	APBB2 (ENSAPEG00000018459) #17	ENSAPEG00000018373	rbm47 (ENSAPEG00000018304) #18	ENSAPEG00000018269 #19	ENSAPEG00000018284	ENSAPEG00000018247 #20	ankrd49 (ENSAPEG00000018241) #21	GPR83 (ENSAPEG00000018197) #22	cdk2ap2 (ENSAPEG00000018169) #23	aip (ENSAPEG00000018153) #24	tmem134 (ENSAPEG00000018129) #25	serping1 (ENSAPEG00000018091) #26	doc2d (ENSAPEG00000018075) #27	ENSAPEG00000018055 #28	ENSAPEG00000018036 #29	ENSAPEG00000018018 #29	DLC1 (ENSAPEG00000017998) #31	SLC44A1 (ENSAPEG00000017943) #32	spock3 (ENSAPEG00000017925) #33	ugt8 (ENSAPEG00000017903) #34	NDST4 (ENSAPEG00000017847) #35	ENSAPEG00000017836	PRSS12 (ENSAPEG00000017799) #36
Clown anemonefish	MODERN SPECIES	594	zgc:66447 (ENSAOCG00000022533)	ENSAOCG00000022523	SLC25A53 (ENSAOCG00000022504)	prps1b (ENSAOCG00000001808)	FRMPD3 (ENSAOCG00000022453)	ENSAOCG00000022416 #13	ncapg (ENSAOCG00000022361) #14	fam184b (ENSAOCG00000022350) #15	ENSAOCG00000001629 #16	APBB2 (ENSAOCG00000022318) #17	rbm47 (ENSAOCG00000022245) #18	ENSAOCG00000022179 #19	ENSAOCG00000022156	cntf (ENSAOCG00000022142) #20	ankrd49 (ENSAOCG00000022125) #21	GPR83 (ENSAOCG00000022112) #22
Spiny chromis	MODERN SPECIES	734										rbm47 (ENSAPOG00000011062) #18	ENSAPOG00000011003 #19	ENSAPOG00000010990	cntf (ENSAPOG00000010986) #20	ENSAPOG00000010974	ankrd49 (ENSAPOG00000010948) #21	GPR83 (ENSAPOG00000010941) #22	cdk2ap2 (ENSAPOG00000010888) #23	aip (ENSAPOG00000010869) #24	tmem134 (ENSAPOG00000010860) #25	serping1 (ENSAPOG00000010811) #26	doc2d (ENSAPOG00000010766) #27	ENSAPOG00000010752
Bicolor damselfish	MODERN SPECIES	680										rbm47 (ENSSPAG00000001257) #18	ENSSPAG00000001363 #19	ENSSPAG00000001375	cntf (ENSSPAG00000001384) #20	ENSSPAG00000001404	ankrd49 (ENSSPAG00000001421) #21	GPR83 (ENSSPAG00000001437) #22	cdk2ap2 (ENSSPAG00000001475) #23	aip (ENSSPAG00000001490) #24	tmem134 (ENSSPAG00000001503) #25	serping1 (ENSSPAG00000001526) #26	doc2d (ENSSPAG00000001564) #27	ENSSPAG00000001728 #28	ENSSPAG00000001741 #29	DLC1 (ENSSPAG00000001832) #31
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000154757.xb.b #8	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000163443.f #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00940000154965.B	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000154757.xb.b #8	ENSGT00940000163443.f #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000154757.xb.b #8	ENSGT00940000163443.f #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000154757.xb.b #8	ENSGT00940000163443.f #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
P. nyererei	MODERN SPECIES	402	CHRNA9 (ENSPNYG00000023065)	ENSPNYG00000023060	ENSPNYG00000023017 #7	ENSPNYG00000022990 #7	slit2 (ENSPNYG00000022956) #12	ENSPNYG00000022929 #13	ncapg (ENSPNYG00000022907) #14	ENSPNYG00000022894 #16	APBB2 (ENSPNYG00000022881) #17	rbm47 (ENSPNYG00000022868) #18	ZFP91 (ENSPNYG00000022860) #19	ENSPNYG00000022856	cntf (ENSPNYG00000022834) #20	ENSPNYG00000022827	ankrd49 (ENSPNYG00000022823) #21	GPR83 (ENSPNYG00000022812) #22	cdk2ap2 (ENSPNYG00000022803) #23	aip (ENSPNYG00000022794) #24	tmem134 (ENSPNYG00000022770) #25	serping1 (ENSPNYG00000022765) #26	doc2d (ENSPNYG00000022757) #27	ENSPNYG00000022753 #28	ENSPNYG00000022744 #29	DLC1 (ENSPNYG00000022734) #31	SLC44A1 (ENSPNYG00000022715) #32	spock3 (ENSPNYG00000022704) #33	ugt8 (ENSPNYG00000022689) #34	NDST4 (ENSPNYG00000022676) #35	PRSS12 (ENSPNYG00000022664) #36	mettl14 (ENSPNYG00000022649) #37	ENSPNYG00000022635
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000154757.xb.b #8	ENSGT00940000163443.f #7	ENSGT00940000158402 #12	ENSGT00940000162414 #13	ENSGT00390000001577 #14	ENSGT00530000063669.a #15	ENSGT00390000013015 #16	ENSGT00390000000002.a.a.a.nb.b #17	ENSGT00940000157352.a	ENSGT00940000156979 #18	ENSGT00940000156393.a.b #19	ENSGT00520000058756	ENSGT00540000073610.A #20	ENSGT00980000198603.B	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00950000183061.a.a.a.a.a.a.b #31	ENSGT00940000173544	ENSGT00940000157174.c #32	ENSGT00940000157828 #33	ENSGT00940000156545 #34	ENSGT00940000157168 #35	ENSGT00940000158131 #36	ENSGT00550000075003 #37
Eastern happy	MODERN SPECIES	18	ENSACLG00000016264 #8	slit2 (ENSACLG00000016309) #12	ENSACLG00000016478 #13	ncapg (ENSACLG00000016533) #14	fam184b (ENSACLG00000016570) #15	ENSACLG00000016600 #16	APBB2 (ENSACLG00000016699) #17	ENSACLG00000016866	ENSACLG00000016873	rbm47 (ENSACLG00000016902) #18	ENSACLG00000016966 #19	ENSACLG00000017011	cntf (ENSACLG00000017021) #20	ENSACLG00000017041	ankrd49 (ENSACLG00000017067) #21	GPR83 (ENSACLG00000017137) #22	cdk2ap2 (ENSACLG00000017169) #23	aip (ENSACLG00000017206) #24	tmem134 (ENSACLG00000017254) #25	serping1 (ENSACLG00000017311) #26	doc2d (ENSACLG00000017370) #27	ENSACLG00000017434 #28	ENSACLG00000017452	LONRF1 (ENSACLG00000017464) #29	DLC1 (ENSACLG00000017556) #31	ENSACLG00000017682	SLC44A1 (ENSACLG00000017703) #32	spock3 (ENSACLG00000017799) #33	ugt8 (ENSACLG00000017829) #34	NDST4 (ENSACLG00000017852) #35	PRSS12 (ENSACLG00000017961) #36
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005023675 #7	ENSMZEG00005023673 #7	slit2 (ENSMZEG00005023668) #12	ENSMZEG00005023665 #13	ncapg (ENSMZEG00005023664) #14	fam184b (ENSMZEG00005023663) #15	ENSMZEG00005023662 #16	APBB2 (ENSMZEG00005023661) #17	rbm47 (ENSMZEG00005023659) #18	ENSMZEG00005023658	ENSMZEG00005023657 #19	ENSMZEG00005023656 #20	ENSMZEG00005023654	ankrd49 (ENSMZEG00005023653) #21	ENSMZEG00005023652	GPR83 (ENSMZEG00005023651) #22	cdk2ap2 (ENSMZEG00005023649) #23	aip (ENSMZEG00005023648) #24	tmem134 (ENSMZEG00005023647) #25	serping1 (ENSMZEG00005023646) #26	doc2d (ENSMZEG00005023644) #27	ENSMZEG00005023642 #28	LONRF1 (ENSMZEG00005023641) #29	DLC1 (ENSMZEG00005023639) #31	SLC44A1 (ENSMZEG00005023637) #32	spock3 (ENSMZEG00005023636) #33	ugt8 (ENSMZEG00005023634) #34	NDST4 (ENSMZEG00005023633) #35	ENSMZEG00005023632 #36	mettl14 (ENSMZEG00005023630) #37	ENSMZEG00005023627
Burton s mouthbrooder	MODERN SPECIES	364	CHRNA9 (ENSHBUG00000003199)	DRD5 (ENSHBUG00000003211)	itln3 (ENSHBUG00000003224) #7	slit2 (ENSHBUG00000003302) #12	ENSHBUG00000003333 #13	zgc:113274 (ENSHBUG00000003349)	ncapg (ENSHBUG00000003365) #14	fam184b (ENSHBUG00000003404) #15	ENSHBUG00000003421 #16	APBB2 (ENSHBUG00000003491) #17	rbm47 (ENSHBUG00000003520) #18	ENSHBUG00000003547 #19	ENSHBUG00000003552	cntf (ENSHBUG00000003564) #20	ankrd49 (ENSHBUG00000003571) #21	GPR83 (ENSHBUG00000003574) #22	cdk2ap2 (ENSHBUG00000003587) #23	aip (ENSHBUG00000003618) #24	tmem134 (ENSHBUG00000003644) #25	serping1 (ENSHBUG00000003656) #26	doc2d (ENSHBUG00000003698) #27	ENSHBUG00000003710 #28	ENSHBUG00000003725 #29	DLC1 (ENSHBUG00000003771) #31	SLC44A1 (ENSHBUG00000003799) #32	spock3 (ENSHBUG00000003806) #33	ugt8 (ENSHBUG00000003824) #34	NDST4 (ENSHBUG00000003882) #35	PRSS12 (ENSHBUG00000003927) #36	mettl14 (ENSHBUG00000003958) #37	ENSHBUG00000003967
Lyretail cichlid	MODERN SPECIES	301	ENSNBRG00000015591	ENSNBRG00000015579 #7	ENSNBRG00000015474 #7	slit2 (ENSNBRG00000015368) #12	ENSNBRG00000015325 #13	ncapg (ENSNBRG00000015239) #14	ENSNBRG00000015218 #15	ENSNBRG00000015168 #16	APBB2 (ENSNBRG00000015113) #17	rbm47 (ENSNBRG00000015092) #18	ZFP91 (ENSNBRG00000015065) #19	ENSNBRG00000015060	cntf (ENSNBRG00000015046) #20	ankrd49 (ENSNBRG00000015034) #21	ENSNBRG00000015018	GPR83 (ENSNBRG00000014989) #22	cdk2ap2 (ENSNBRG00000014970) #23	aip (ENSNBRG00000014948) #24	tmem134 (ENSNBRG00000014928) #25	serping1 (ENSNBRG00000014904) #26	doc2d (ENSNBRG00000014876) #27	ENSNBRG00000014861 #28	ENSNBRG00000014845 #29	DLC1 (ENSNBRG00000014789) #31	ENSNBRG00000014765	SLC44A1 (ENSNBRG00000014686) #32	spock3 (ENSNBRG00000014656) #33	ugt8 (ENSNBRG00000014639) #34	NDST4 (ENSNBRG00000014603) #35	PRSS12 (ENSNBRG00000014562) #36	mettl14 (ENSNBRG00000014523) #37
Nile tilapia	MODERN SPECIES	18	DRD5 (ENSONIG00000009021)	itln3 (ENSONIG00000009022) #7	slit2 (ENSONIG00000009028) #12	ENSONIG00000038606	ENSONIG00000009039 #13	ENSONIG00000037398	ncapg (ENSONIG00000009042) #14	fam184b (ENSONIG00000022293) #15	ENSONIG00000033575 #16	APBB2 (ENSONIG00000009051) #17	ENSONIG00000009058	rbm47 (ENSONIG00000009061) #18	ENSONIG00000009063 #19	ENSONIG00000030288 #20	ankrd49 (ENSONIG00000009065) #21	gpr83 (ENSONIG00000034729) #22	ENSONIG00000039586	ENSONIG00000034323	cdk2ap2 (ENSONIG00000042338) #23	aip (ENSONIG00000014625) #24	tmem134 (ENSONIG00000014624) #25	serping1 (ENSONIG00000014618) #26	doc2d (ENSONIG00000014615) #27	ENSONIG00000042853 #28	ENSONIG00000014612 #29	DLC1 (ENSONIG00000014607) #31	SLC44A1 (ENSONIG00000014604) #32	spock3 (ENSONIG00000014601) #33	ugt8 (ENSONIG00000014598) #34	ENSONIG00000014591 #35	PRSS12 (ENSONIG00000014590) #36
Midas cichlid	MODERN SPECIES	1325	n4bp2 (ENSACIG00000011171)	rhoh (ENSACIG00000011222)	CHRNA9 (ENSACIG00000011231)	ENSACIG00000011244	slit2 (ENSACIG00000011265) #12	ENSACIG00000011346 #13	ncapg (ENSACIG00000011364) #14	ENSACIG00000011458 #16	APBB2 (ENSACIG00000011492) #17	rbm47 (ENSACIG00000011531) #18	ENSACIG00000011549 #19	ENSACIG00000011566	cntf (ENSACIG00000011575) #20	ENSACIG00000011588	ankrd49 (ENSACIG00000011611) #21	GPR83 (ENSACIG00000011633) #22
Tiger tail seahorse	MODERN SPECIES	257	CHRNA9 (ENSHCOG00000002251)	ENSHCOG00000000067	ENSHCOG00000002231	ENSHCOG00000002222 #12	slit2 (ENSHCOG00000002208) #12	ENSHCOG00000002176 #13	ncapg (ENSHCOG00000002168) #14	fam184b (ENSHCOG00000002151) #15	ENSHCOG00000002121 #16	APBB2 (ENSHCOG00000002111) #17	rbm47 (ENSHCOG00000002074) #18	ENSHCOG00000002041	ZFP91 (ENSHCOG00000002035) #19	ENSHCOG00000002026 #20	ankrd49 (ENSHCOG00000002022) #21	GPR83 (ENSHCOG00000002015) #22	cdk2ap2 (ENSHCOG00000002011) #23	aip (ENSHCOG00000002007) #24	tmem134 (ENSHCOG00000001994) #25	doc2d (ENSHCOG00000000063) #27	CABP2 (ENSHCOG00000001956) #28	ENSHCOG00000001947 #29	tmem186 (ENSHCOG00000001938)	hmox2a (ENSHCOG00000001934)	cxcl12b (ENSHCOG00000001921)	xpnpep1 (ENSHCOG00000000061)	ENSHCOG00000001878	add3a (ENSHCOG00000001807)	ENSHCOG00000001774	mxi1 (ENSHCOG00000001769)	dusp5 (ENSHCOG00000001753)
Pinecone sodierfish	MODERN SPECIES		n4bp2 (ENSMMDG00005003296)	rhoh (ENSMMDG00005003292)	CHRNA9 (ENSMMDG00005003288)	ENSMMDG00005003283	ENSMMDG00005002689	ENSMMDG00005002615	slit2 (ENSMMDG00005002074) #12	ENSMMDG00005002032 #13	ncapg (ENSMMDG00005001802) #14	APBB2 (ENSMMDG00005001523) #17	ENSMMDG00005001493	rbm47 (ENSMMDG00005001479) #18	ENSMMDG00005001465 #19	ENSMMDG00005001463 #20	ankrd49 (ENSMMDG00005001457) #21	GPR83 (ENSMMDG00005001454) #22	cdk2ap2 (ENSMMDG00005001450) #23	aip (ENSMMDG00005001446) #24	tmem134 (ENSMMDG00005001434) #25	serping1 (ENSMMDG00005001425) #26	doc2d (ENSMMDG00005001416) #27	ENSMMDG00005001412 #28	ENSMMDG00005001398 #29	DLC1 (ENSMMDG00005001092) #31	ENSMMDG00005001087	SLC44A1 (ENSMMDG00005001082) #32	spock3 (ENSMMDG00005001078) #33	ugt8 (ENSMMDG00005001077) #34	NDST4 (ENSMMDG00005001034) #35	PRSS12 (ENSMMDG00005001027) #36	mettl14 (ENSMMDG00005001021) #37
Cod	MODERN SPECIES	16	ENSGMOG00000036296	ENSGMOG00000035376	ENSGMOG00000022935	ENSGMOG00000009754	ENSGMOG00000009669	ENSGMOG00000009712	ENSGMOG00000009717	ENSGMOG00000025548	nptxrb (ENSGMOG00000032042)	ENSGMOG00000028484	ENSGMOG00000009802	ENSGMOG00000014802 #18	ENSGMOG00000014815 #19	ENSGMOG00000035309	ENSGMOG00000031164 #21	ENSGMOG00000018303 #22	ENSGMOG00000013238 #23	ENSGMOG00000013226 #24	ENSGMOG00000013221 #25	serping1 (ENSGMOG00000013214) #26	doc2d (ENSGMOG00000003329) #27	ENSGMOG00000022364 #28	ENSGMOG00000002101 #29	ENSGMOG00000002063 #31	ENSGMOG00000033853	ENSGMOG00000003443	spock3 (ENSGMOG00000003415) #33	ugt8 (ENSGMOG00000003398) #34	ENSGMOG00000014106 #35	ENSGMOG00000035505 #36	ENSGMOG00000003953 #36
Protacanthopterygii	ANCESTRAL SPECIES	40	ENSGT00940000157733.a.b	ENSGT00390000004552	ENSGT00530000063548.B	ENSGT00390000006641	ENSGT00940000156164.a	ENSGT00390000017281	ENSGT00950000182942.a.a	ENSGT01030000234601.o	ENSGT00940000153745.b.e.a	ENSGT00390000001189.b.j	ENSGT00390000002596.b	ENSGT01000000214857	ENSGT00940000156393.a.b #19	ENSGT00540000073610.A #20	ENSGT00390000003919 #21	ENSGT00940000154336 #22	ENSGT01070000253822.D.a.h.b	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681 #26	ENSGT00940000166345 #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b #29	ENSGT00940000180362
Northern pike	MODERN SPECIES	24	ENSELUG00000024650	ENSELUG00000032057	ENSELUG00000022759	ENSELUG00000000968	ENSELUG00000022793	ENSELUG00000022783	ENSELUG00000022798	ENSELUG00000022812	tacr3l (ENSELUG00000022845)	acy3.2 (ENSELUG00000001253)	cldnd1b (ENSELUG00000029266)	ENSELUG00000033505	ENSELUG00000022897 #19	ENSELUG00000022916 #20	ankrd49 (ENSELUG00000026478) #21	GPR83 (ENSELUG00000022975) #22	ENSELUG00000032300	ENSELUG00000023021	ENSELUG00000030691	ENSELUG00000028280	cdk2ap2 (ENSELUG00000030693) #23	aip (ENSELUG00000023123) #24	tmem134 (ENSELUG00000023207) #25	serping1 (ENSELUG00000023225) #26	doc2d (ENSELUG00000023240) #27	ENSELUG00000026595 #29	CABP2 (ENSELUG00000028776) #28	LONRF1 (ENSELUG00000023387) #29	ENSELUG00000023310	RPS6KB2 (ENSELUG00000001422)	ENSELUG00000032247
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	66	ENSGT00950000182942.a.a	ENSGT00940000163989.a.b.q.a	ENSGT01030000234592.A.b.a.db.b.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01030000234601.o	ENSGT00940000173396	ENSGT00940000153745.b.e.a	ENSGT00390000001189.b.j.h	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT01000000214857.f.b	ENSGT00940000156393.a.b.b #19	ENSGT00540000073610.A.c #20	ENSGT00390000003919 #21	ENSGT00940000154336.pd.a #22	ENSGT01040000240385.A.a.a.a.a.b	ENSGT01040000240400.c.b.b.a.a.b.b	ENSGT00940000167415.d	ENSGT01040000240385.A.a.b.b.e.a	ENSGT01040000240400.c.b.b.b.a.b	ENSGT01040000240400.c.b.b.b.a.a	ENSGT01040000240385.H.g.e.a	ENSGT01070000253822.D.a.h.b.b	ENSGT01070000253822.D.a.h.b.a	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00390000019377.a.a.b.j	ENSGT00940000180384
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.a	ENSGT01100000263489.a.a.b.b.f.c.a.a.a.a.a.a.a	ENSGT00940000156164.a.b	ENSGT00390000017281.a	ENSGT00950000182942.a.a	ENSGT00940000163989.a.b.q.a	ENSGT00940000163989.a.a.x	ENSGT00940000173396	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT00940000156393.a.b.b #19	ENSGT00540000073610.A.c #20	ENSGT00390000003919 #21	ENSGT00940000154336.pd.a #22	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #23	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.b.a.a #26	ENSGT00940000166345.i #27	ENSGT00940000159796.a.a #28	ENSGT00440000033329.a.a.b.m.b #29	ENSGT00940000155062.a.n	ENSGT00440000033329.a.a.b.m.a #29	ENSGT00940000180362
Oncorhynchus	ANCESTRAL SPECIES	52	ENSGT00390000017281.a	ENSGT00950000182942.a.a	ENSGT01030000234592.A.b.a.cb	ENSGT01030000234601.o.e.a	ENSGT00940000163989.a.b.q.a	ENSGT00940000163989.a.a.x	ENSGT01030000234601.o.e.b	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT01000000214857.f.b.b	ENSGT00940000156393.a.b.b #19	ENSGT00540000073610.A.c #20	ENSGT00390000003919 #21	ENSGT00940000154336.pd.a #22	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #23	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.b.a.a #26	ENSGT00940000166345.i #27	ENSGT00940000159796.a.a.e #28	ENSGT00440000033329.a.a.b.m.a #29	ENSGT00940000180362	ENSGT00940000155062.a.m	ENSGT01050000244806.a.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	52	ENSGT00390000017281.a	ENSGT00950000182942.a.a	ENSGT01030000234592.A.b.a.cb	ENSGT01030000234601.o.e.a	ENSGT00940000163989.a.b.q.a	ENSGT00940000163989.a.a.x	ENSGT01030000234601.o.e.b	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT01000000214857.f.b.b	ENSGT00940000156393.a.b.b #19	ENSGT00540000073610.A.c #20	ENSGT00390000003919 #21	ENSGT00940000154336.pd.a #22	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #23	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.b.a.a #26	ENSGT00940000166345.i #27	ENSGT00940000159796.a.a.e #28	ENSGT00440000033329.a.a.b.m.a #29	ENSGT00940000180362	ENSGT00940000155062.a.m	ENSGT01050000244806.a.a.a.b
Coho salmon	MODERN SPECIES	3	glb1 (ENSOKIG00005024264)	ENSOKIG00005024201	ENSOKIG00005024191	ENSOKIG00005024136	ENSOKIG00005024125	ENSOKIG00005024107	tacr3l (ENSOKIG00005023944)	ACY3 (ENSOKIG00005023912)	cldnd1b (ENSOKIG00005023893)	ENSOKIG00005023866	ENSOKIG00005023841	ENSOKIG00005023805	ENSOKIG00005023786 #19	ENSOKIG00005023774 #20	ankrd49 (ENSOKIG00005023772) #21	GPR83 (ENSOKIG00005023758) #22	ENSOKIG00005023748	ENSOKIG00005023659	CDK2AP2 (ENSOKIG00005023637) #23	AIP (ENSOKIG00005023623) #24	ENSOKIG00005023608 #25	serping1 (ENSOKIG00005023514) #26	doc2d (ENSOKIG00005023418) #27	ENSOKIG00005023395 #28	ENSOKIG00005023381 #29	ENSOKIG00005023373	RPS6KB2 (ENSOKIG00005023179)	ENSOKIG00005023150	ENSOKIG00005023132	ENSOKIG00005023106	ENSOKIG00005023026
Chinook salmon	MODERN SPECIES	27	ENSOTSG00005023427	ENSOTSG00005023424	ENSOTSG00005023420	ENSOTSG00005023417	ENSOTSG00005023411	ENSOTSG00005023407	ENSOTSG00005023406	patl1 (ENSOTSG00005023397)	pdcd4a (ENSOTSG00005021716)	mogs (ENSOTSG00005021715)	ENSOTSG00005021714	FBXO41 (ENSOTSG00005021713)	ENSOTSG00005021712 #19	cntf (ENSOTSG00005021711) #20	ankrd49 (ENSOTSG00005021710) #21	GPR83 (ENSOTSG00005021695) #22	rnf24 (ENSOTSG00005021692)	smox (ENSOTSG00005021689)	ENSOTSG00005021686	ENSOTSG00005021684	ADRA1D (ENSOTSG00005021682)	ENSOTSG00005021681	ENSOTSG00005021670	CTNNA2 (ENSOTSG00005021645)	LRRTM1 (ENSOTSG00005021160)	ctnna2 (ENSOTSG00005019270)	suclg1 (ENSOTSG00005019261)	cisd2 (ENSOTSG00005019259)	ENSOTSG00005019257	TACR3 (ENSOTSG00005019256)	cnga1a (ENSOTSG00005019254)
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000077367	ENSOMYG00000010725	tacr3l (ENSOMYG00000010698)	ENSOMYG00000010670	cldnd1b (ENSOMYG00000010656)	ENSOMYG00000009288	ENSOMYG00000056580	ENSOMYG00000010650	ENSOMYG00000060008	ENSOMYG00000070345	ENSOMYG00000070284	ENSOMYG00000010626	ENSOMYG00000061354	ENSOMYG00000010618 #19	ENSOMYG00000010607 #21	ENSOMYG00000010516 #22	ENSOMYG00000010441	ENSOMYG00000010305	ENSOMYG00000010235 #23	ENSOMYG00000010208 #24	ENSOMYG00000059054 #25	serping1 (ENSOMYG00000010083) #26	serping1 (ENSOMYG00000076828) #26	doc2d (ENSOMYG00000010048) #27	ENSOMYG00000061139	ENSOMYG00000075864 #28	ENSOMYG00000059678	ENSOMYG00000010036	ENSOMYG00000074207 #29	ENSOMYG00000009955	ENSOMYG00000009605
Salmo	ANCESTRAL SPECIES	59	ENSGT00950000182942.a.a	ENSGT00940000163989.a.b.q.a	ENSGT01030000234592.A.b.a.db.b.a	ENSGT01030000234601.o.g.b.a	ENSGT01030000234601.o.g.a.a	ENSGT00940000173396	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT01000000214857.f.b.a	ENSGT00940000154348.c.b.a.a.a.d.b	ENSGT00940000156393.a.b.b #19	ENSGT00540000073610.A.c #20	ENSGT00390000003919 #21	ENSGT00940000154336.pd.a #22	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.s.a #23	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.a #26	ENSGT00940000166345.i #27	ENSGT00940000159796.a.a.d #28	ENSGT00440000033329.a.a.b.m.a #29	ENSGT00940000180362	ENSGT00940000155062.a.m	ENSGT01050000244806.a.a.a.b.a	ENSGT01050000244806.a.a.a.a.a.b	ENSGT01050000244806.a.a.a.a.b
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000101229	ENSSSAG00000063668	ENSSSAG00000063605	ENSSSAG00000063611	ENSSSAG00000107971	ENSSSAG00000111240	ENSSSAG00000063678	tacr3l (ENSSSAG00000063695)	acy3 (ENSSSAG00000063716)	cldnd1b (ENSSSAG00000063722)	ENSSSAG00000118225	ENSSSAG00000110257	ENSSSAG00000095656 #19	ENSSSAG00000094036 #20	ENSSSAG00000096879 #21	ENSSSAG00000093695 #22	ENSSSAG00000090418	ENSSSAG00000118802	ENSSSAG00000063815	ENSSSAG00000063865 #23	ENSSSAG00000086675	aip (ENSSSAG00000063862) #24	ENSSSAG00000063873 #25	serping1 (ENSSSAG00000041306) #26	doc2d (ENSSSAG00000041354) #27	ENSSSAG00000041457 #28	ENSSSAG00000085583	ENSSSAG00000063939 #29	ENSSSAG00000063963	ENSSSAG00000093559	ENSSSAG00000097384
River trout	MODERN SPECIES	33	glb1 (ENSSTUG00000047711)	ENSSTUG00000048484	ENSSTUG00000048497	ENSSTUG00000048516	ENSSTUG00000048521	ENSSTUG00000048526	tacr3l (ENSSTUG00000048533)	ACY3 (ENSSTUG00000048543)	cldnd1b (ENSSTUG00000048556)	ENSSTUG00000048567	ENSSTUG00000048569	ENSSTUG00000012931	ENSSTUG00000012958 #19	ENSSTUG00000012974 #20	ankrd49 (ENSSTUG00000012977) #21	GPR83 (ENSSTUG00000012980) #22	ENSSTUG00000012990	ENSSTUG00000013101	ENSSTUG00000013138	cdk2ap2 (ENSSTUG00000013144) #23	aip (ENSSTUG00000013160) #24	tmem134 (ENSSTUG00000013182) #25	serping1 (ENSSTUG00000013203) #26	doc2d (ENSSTUG00000013241) #27	ENSSTUG00000013309 #28	ENSSTUG00000013327 #29	ENSSTUG00000013340	RPS6KB2 (ENSSTUG00000013358)	ENSSTUG00000013851	ENSSTUG00000013860	ENSSTUG00000013888
Huchen	MODERN SPECIES	1330													ENSHHUG00000017952 #19	cntf (ENSHHUG00000017949) #20	ankrd49 (ENSHHUG00000017944) #21	GPR83 (ENSHHUG00000017938) #22	ENSHHUG00000017928	ENSHHUG00000017918	ENSHHUG00000017899	ENSHHUG00000017892	ENSHHUG00000017873	cdk2ap2 (ENSHHUG00000017832) #23	aip (ENSHHUG00000017798) #24	tmem134 (ENSHHUG00000017777) #25	serping1 (ENSHHUG00000017754) #26	doc2d (ENSHHUG00000017723) #27
Salmoninae	ANCESTRAL SPECIES	784												ENSGT01000000214857.e	ENSGT00940000156393.a.b.a #19	ENSGT00540000073610.A.d #20	ENSGT00940000172609	ENSGT00940000154336.pd.b #22	ENSGT00940000160334.s #23	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e #26	ENSGT00940000166345.j #27
Salmoninae_a	ANCESTRAL SPECIES	84	ENSGT00940000157733.a.b.h	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00390000017281.b	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a #19	ENSGT00540000073610.A.d #20	ENSGT00940000172609	ENSGT00940000154336.pd.b #22	ENSGT00940000160334.s.b #23	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e #26	ENSGT00940000166345.j #27
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT01060000249984	ENSGT00940000157733.a.b.h	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00390000017281.b	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a #19	ENSGT00540000073610.A.d #20	ENSGT00940000154336.pd.b #22	ENSGT00940000160334.s.b #23	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e #26	ENSGT00940000166345.j #27	ENSGT00940000159796.a.a.f #28	ENSGT00440000033329.a.a.b.m.b #29	ENSGT00940000155062.a.n	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p
Rainbow trout	MODERN SPECIES	10	fat1a (ENSOMYG00000008459)	frg1 (ENSOMYG00000008536)	ENSOMYG00000054698	asah1b (ENSOMYG00000008849)	pcm1 (ENSOMYG00000009041)	ENSOMYG00000009107	ENSOMYG00000009156	ENSOMYG00000009175	ENSOMYG00000009253	tacr3l (ENSOMYG00000009204)	ENSOMYG00000009272	ENSOMYG00000067081	ENSOMYG00000070156	ENSOMYG00000058329	ENSOMYG00000010610 #20	ENSOMYG00000064659 #22	ENSOMYG00000072004 #23	ENSOMYG00000011672 #24	ENSOMYG00000011651 #25	ENSOMYG00000059190	serping1 (ENSOMYG00000011625) #26	doc2d (ENSOMYG00000011603) #27	ENSOMYG00000077883 #28	ENSOMYG00000055206 #29	ENSOMYG00000007521	ENSOMYG00000061229	ENSOMYG00000010122	ENSOMYG00000016570	ENSOMYG00000016555	ENSOMYG00000015868	mogs (ENSOMYG00000015792)
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000160321.c.a.g.a	ENSGT00940000157733.a.b.h	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00390000017281.b	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a #19	ENSGT00540000073610.A.d #20	ENSGT00940000154336.pd.b #22	ENSGT00940000160334.s.b #23	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e #26	ENSGT00940000166345.j #27	ENSGT00940000159796.a.a.f #28	ENSGT00440000033329.a.a.b.m.b #29	ENSGT00940000155062.a.n	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p
Coho salmon	MODERN SPECIES	27	frg1 (ENSOKIG00005015564)	asah1b (ENSOKIG00005015635)	pcm1 (ENSOKIG00005015844)	ENSOKIG00005015955	ENSOKIG00005015958	ENSOKIG00005015980	ENSOKIG00005016006	ENSOKIG00005016010	tacr3l (ENSOKIG00005016023)	ENSOKIG00005016065	ACY3 (ENSOKIG00005016070)	cldnd1b (ENSOKIG00005016083)	ENSOKIG00005016092	ENSOKIG00005016103 #19	ENSOKIG00005016121 #20	GPR83 (ENSOKIG00005016218) #22	cdk2ap2 (ENSOKIG00005016226) #23	aip (ENSOKIG00005016244) #24	tmem134 (ENSOKIG00005016256) #25	serping1 (ENSOKIG00005016270) #26	doc2d (ENSOKIG00005016308) #27	LONRF1 (ENSOKIG00005016341) #29	RPS6KB2 (ENSOKIG00005016392)	ENSOKIG00005017183	patl1 (ENSOKIG00005017198)	ENSOKIG00005017262	ENSOKIG00005017303	mogs (ENSOKIG00005017826)	FBXO41 (ENSOKIG00005017837)	rnf24 (ENSOKIG00005017879)	smox (ENSOKIG00005017892)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2	ENSOTSG00005001357	mtnr1aa (ENSOTSG00005001370)	fat1a (ENSOTSG00005001394)	ENSOTSG00005001542	frg1 (ENSOTSG00005001546)	asah1b (ENSOTSG00005001550)	pcm1 (ENSOTSG00005001714)	ENSOTSG00005001757	osbp (ENSOTSG00005001778)	ccdc86 (ENSOTSG00005001805)	ACY3 (ENSOTSG00005001822)	tacr3l (ENSOTSG00005001838)	cldnd1b (ENSOTSG00005001844)	ENSOTSG00005001847	ENSOTSG00005001855 #20	GPR83 (ENSOTSG00005001862) #22	cdk2ap2 (ENSOTSG00005001875) #23	aip (ENSOTSG00005001890) #24	tmem134 (ENSOTSG00005001894) #25	serping1 (ENSOTSG00005001901) #26	doc2d (ENSOTSG00005001907) #27	ENSOTSG00005001915 #28	ENSOTSG00005001919 #29	ENSOTSG00005001924 #29	RPS6KB2 (ENSOTSG00005001961)	patl1 (ENSOTSG00005003681)	pdcd4a (ENSOTSG00005003692)	ENSOTSG00005005496	ENSOTSG00005005497	FBXO41 (ENSOTSG00005005498)	rnf24 (ENSOTSG00005005499)
Chinook salmon	MODERN SPECIES	66	ENSOTSG00005025708	slc31a2 (ENSOTSG00005025705)	niban2a (ENSOTSG00005025395)	stxbp1a (ENSOTSG00005025323)	ENSOTSG00005025315	ENSOTSG00005025314	WHRN (ENSOTSG00005024995)	MAN1B1 (ENSOTSG00005024819)	CACNA1B (ENSOTSG00005021787)	ehmt1b (ENSOTSG00005021006)	rtknb (ENSOTSG00005021005)	ENSOTSG00005021004	ENSOTSG00005021003	ENSOTSG00005021001 #19	cntf (ENSOTSG00005021000) #20	GPR83 (ENSOTSG00005020999) #22	cdk2ap2 (ENSOTSG00005020998) #23	aip (ENSOTSG00005020997) #24	tmem134 (ENSOTSG00005020996) #25	serping1 (ENSOTSG00005020995) #26	doc2d (ENSOTSG00005020994) #27	ENSOTSG00005020993 #29	ENSOTSG00005020992 #29	RPS6KB2 (ENSOTSG00005020990)	patl1 (ENSOTSG00005020988)	pdcd4a (ENSOTSG00005019518)	ENSOTSG00005019515	ENSOTSG00005019514	FBXO41 (ENSOTSG00005019513)	rnf24 (ENSOTSG00005019512)	smox (ENSOTSG00005019511)
Salmo	ANCESTRAL SPECIES	82			ENSGT00940000157733.a.b.h	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a #19	ENSGT00540000073610.A.d #20	ENSGT00940000172609	ENSGT00940000154336.pd.b #22	ENSGT00940000160334.s.b #23	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e #26	ENSGT00940000166345.j #27	ENSGT00940000159796.a.a.c #28	ENSGT00440000033329.a.a.b.m.b #29	ENSGT00940000155062.a.n	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.h	ENSGT00940000157511.k
River trout	MODERN SPECIES	2	ENSSTUG00000032711	frg1 (ENSSTUG00000032688)	asah1b (ENSSTUG00000031735)	pcm1 (ENSSTUG00000031314)	ENSSTUG00000031288	osbp (ENSSTUG00000031231)	ccdc86 (ENSSTUG00000031219)	tacr3l (ENSSTUG00000031201)	ACY3 (ENSSTUG00000031191)	cldnd1b (ENSSTUG00000031183)	ENSSTUG00000031177	ENSSTUG00000031173	ENSSTUG00000031155 #19	ENSSTUG00000031149 #20	ENSSTUG00000031142	GPR83 (ENSSTUG00000031138) #22	cdk2ap2 (ENSSTUG00000031121) #23	aip (ENSSTUG00000031104) #24	tmem134 (ENSSTUG00000031098) #25	serping1 (ENSSTUG00000031094) #26	doc2d (ENSSTUG00000031080) #27	ENSSTUG00000047334 #28	ENSSTUG00000047328 #29	RPS6KB2 (ENSSTUG00000047181)	ENSSTUG00000047168	ENSSTUG00000047161	ENSSTUG00000047157	patl1 (ENSSTUG00000047084)	ENSSTUG00000047081	pdcd4a (ENSSTUG00000046821)	mogs (ENSSTUG00000046788)
Atlantic salmon	MODERN SPECIES	27	asah1b (ENSSSAG00000027888)	ENSSSAG00000114118	pcm1 (ENSSSAG00000038988)	ENSSSAG00000040908	ENSSSAG00000040927	ENSSSAG00000040952	ENSSSAG00000105233	ENSSSAG00000083627	tacr3l (ENSSSAG00000095583)	ENSSSAG00000041089	cldnd1b (ENSSSAG00000089615)	ENSSSAG00000102183	ENSSSAG00000041120 #19	ENSSSAG00000041148	ENSSSAG00000041156	ENSSSAG00000106519 #22	ENSSSAG00000041260 #23	ENSSSAG00000041284 #24	ENSSSAG00000041290 #25	serping1 (ENSSSAG00000063885) #26	doc2d (ENSSSAG00000063929) #27	ENSSSAG00000100733 #28	ENSSSAG00000041511 #29	ENSSSAG00000041617	ENSSSAG00000042856	ENSSSAG00000043053	mogs (ENSSSAG00000064563)	ENSSSAG00000046984	ENSSSAG00000047010	ENSSSAG00000105176	RNF24 (ENSSSAG00000095342)
Huchen	MODERN SPECIES	4260																GPR83 (ENSHHUG00000045511) #22	cdk2ap2 (ENSHHUG00000045489) #23	aip (ENSHHUG00000045467) #24	ENSHHUG00000045461	tmem134 (ENSHHUG00000045448) #25	ENSHHUG00000045442	ENSHHUG00000045433 #26
Salmoninae	ANCESTRAL SPECIES	38	ENSGT00940000155516.u.c	ENSGT00940000160157.l	ENSGT00940000153168.A.g	ENSGT00950000183061.a.a.a.a.b.f ##31	ENSGT00940000167491.f	ENSGT00940000160128.cb.a	ENSGT00940000161362.c	ENSGT00730000111220.m.b.a.a	ENSGT00940000165703.e	ENSGT00390000002414.ac	ENSGT01030000234513.B.a.d.b	ENSGT01050000244864.B.a.h.c	ENSGT00940000160693.e	ENSGT00940000159451.e	ENSGT00940000158347.y.d	ENSGT00940000154336.qd #22	ENSGT00940000153259.a.a.a.d	ENSGT00940000155516.u.d	ENSGT00940000160157.k	ENSGT00940000153168.A.h	ENSGT00950000183061.a.a.a.a.b.e ##31	ENSGT00940000167491.e	ENSGT00390000002197	ENSGT00940000160128.cb.b	ENSGT00940000161362.d	ENSGT00730000111220.m.a	ENSGT00940000165703.f	ENSGT00390000002414.`c	ENSGT01030000234513.B.a.d.a	ENSGT01050000244864.B.a.h.d	ENSGT00940000160693.f
Huchen	MODERN SPECIES	2	ENSHHUG00000016969	ENSHHUG00000016965	ENSHHUG00000016955	sh2d1aa (ENSHHUG00000016945)	TENM1 (ENSHHUG00000016311)	smarca1 (ENSHHUG00000016236)	ENSHHUG00000016217	ARHGEF9 (ENSHHUG00000016097)	amer1 (ENSHHUG00000016089)	mtmr8 (ENSHHUG00000016052)	shisa2a (ENSHHUG00000016042)	ZC3H12B (ENSHHUG00000016031)	las1l (ENSHHUG00000016010)	msna (ENSHHUG00000013827)	ENSHHUG00000013809	ENSHHUG00000013800 #22	ENSHHUG00000013779	AR (ENSHHUG00000013567)	OPHN1 (ENSHHUG00000013514)	yipf6 (ENSHHUG00000013495)	stard8 (ENSHHUG00000013087) ##31	ENSHHUG00000013073	steep1 (ENSHHUG00000013055)	efnb1 (ENSHHUG00000013043)	nalf2 (ENSHHUG00000013037)	eda (ENSHHUG00000013033)	wnt11f2 (ENSHHUG00000012983)	igbp1 (ENSHHUG00000012975)	gjb1a (ENSHHUG00000012964)	ENSHHUG00000012961	ZMYM3 (ENSHHUG00000012854)
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00530000063666.a.fb	ENSGT01050000244888.b.a.c.a.a	ENSGT01000000217261	ENSGT01030000234566.e.b.b.b.b	ENSGT00940000157297.n.a	ENSGT00940000159803.m	ENSGT00940000160622.`b.b	ENSGT00530000063529.B.b	ENSGT00940000153902.b.a.a	ENSGT00940000162717.a	ENSGT00940000159316.xb.b	ENSGT00990000212008	ENSGT01090000260082.d.a.a.d.c	ENSGT00940000166318.b	ENSGT00940000154633.jd	ENSGT00940000154336.qd #22	ENSGT00940000153259.a.a.a.c	ENSGT00940000155516.u.c	ENSGT00940000160157.l	ENSGT00940000153168.A.g	ENSGT00950000183061.a.a.a.a.b.f ##31	ENSGT00940000167491.f	ENSGT00940000160128.cb.a	ENSGT00940000161362.c	ENSGT00730000111220.m.a.a	ENSGT00940000165703.e	ENSGT00390000002414.ac	ENSGT01030000234513.B.a.d.b	ENSGT01050000244864.B.a.h.c	ENSGT00940000160693.e	ENSGT00940000159451.e
Salmo	ANCESTRAL SPECIES	13	ENSGT00390000011425.A.d	ENSGT00940000164237.g	ENSGT00530000063666.a.gb	ENSGT01050000244888.b.a.c.a.b	ENSGT00940000155920.l	ENSGT01030000234566.e.b.b.b.a	ENSGT00940000157297.n.b	ENSGT00940000159803.n	ENSGT00940000154103.b.f	ENSGT00530000063529.B.a	ENSGT00940000153902.b.a.b	ENSGT00940000157443.c	ENSGT00940000159316.xb.a	ENSGT00390000014785	ENSGT01090000260082.d.a.a.d.d	ENSGT00940000154336.qd #22	ENSGT00940000153259.a.a.a.d	ENSGT00940000155516.u.d	ENSGT00940000160157.k	ENSGT00940000153168.A.h	ENSGT00950000183061.a.a.a.a.b.e ##31	ENSGT00940000167491.e	ENSGT00390000002197	ENSGT00940000160128.cb.b	ENSGT00940000161362.d	ENSGT00730000111220.m.a.b	ENSGT00940000165703.f	ENSGT00390000002414.`c	ENSGT01030000234513.B.a.d.a	ENSGT01050000244864.B.a.h.d	ENSGT00940000160693.f
River trout	MODERN SPECIES	6	ENSSTUG00000023313	apool (ENSSTUG00000023431)	agtr2 (ENSSTUG00000023443)	sh2d1aa (ENSSTUG00000023451)	TENM1 (ENSSTUG00000023466)	smarca1 (ENSSTUG00000023581)	ENSSTUG00000023870	ARHGEF9 (ENSSTUG00000023916)	amer1 (ENSSTUG00000024872)	asb12a (ENSSTUG00000024880)	ENSSTUG00000024883	shisa2a (ENSSTUG00000024888)	ZC3H12B (ENSSTUG00000024895)	las1l (ENSSTUG00000024915)	msna (ENSSTUG00000024984)	ENSSTUG00000028290 #22	ENSSTUG00000028322	AR (ENSSTUG00000028332)	OPHN1 (ENSSTUG00000028431)	yipf6 (ENSSTUG00000028600)	stard8 (ENSSTUG00000028653) ##31	ENSSTUG00000029068	steep1 (ENSSTUG00000029085)	efnb1 (ENSSTUG00000002656)	nalf2 (ENSSTUG00000002670)	eda (ENSSTUG00000002679)	wnt11f2 (ENSSTUG00000002694)	igbp1 (ENSSTUG00000002756)	gjb1a (ENSSTUG00000002771)	ZMYM3 (ENSSTUG00000002793)	ENSSTUG00000002991
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000164237.h	ENSGT00530000063666.a.fb	ENSGT01050000244888.b.a.c.a.a	ENSGT01000000217261	ENSGT01030000234566.e.b.b.b.b	ENSGT00940000157297.n.a	ENSGT00940000159803.m	ENSGT00940000160622.`b.b	ENSGT00530000063529.B.b	ENSGT00940000153902.b.a.a	ENSGT00940000162717.a	ENSGT00940000159316.xb.b	ENSGT01090000260082.d.a.a.d.c	ENSGT00940000166318.b	ENSGT00940000154633.jd	ENSGT00940000154336.qd #22	ENSGT00940000153259.a.a.a.c	ENSGT00940000155516.u.c	ENSGT00940000160157.l	ENSGT00940000153168.A.g	ENSGT00940000167491.f	ENSGT00940000160128.cb.a	ENSGT00940000161362.c	ENSGT00730000111220.m.a.a	ENSGT00940000165703.e	ENSGT00390000002414.ac	ENSGT01030000234513.B.a.d.b	ENSGT01050000244864.B.a.h.c	ENSGT00940000160693.e	ENSGT00940000159451.e	ENSGT01050000245018.a
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000077112	ENSOMYG00000060315	ENSOMYG00000005420	smarca1 (ENSOMYG00000006770)	ENSOMYG00000007202	ENSOMYG00000065810	ENSOMYG00000010152	amer1 (ENSOMYG00000010155)	asb12a (ENSOMYG00000010188)	mtmr8 (ENSOMYG00000008389)	ZC3H12B (ENSOMYG00000010201)	msna (ENSOMYG00000010701)	ENSOMYG00000074842	fdx1b (ENSOMYG00000013576)	ENSOMYG00000013596	ENSOMYG00000013622 #22	ENSOMYG00000013632	ar-beta (ENSOMYG00000013733)	ENSOMYG00000014622	yipf6 (ENSOMYG00000014658)	ENSOMYG00000074891	ENSOMYG00000014689	efnb1 (ENSOMYG00000014732)	nalf2 (ENSOMYG00000014780)	eda (ENSOMYG00000064449)	wnt11f2 (ENSOMYG00000014826)	igbp1 (ENSOMYG00000074025)	gjb1a (ENSOMYG00000048060)	ENSOMYG00000014852	ENSOMYG00000014916	tbc1d8b (ENSOMYG00000016199)
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00390000011425.A.c	ENSGT00940000164237.h	ENSGT00530000063666.a.fb	ENSGT01050000244888.b.a.c.a.a	ENSGT01000000217261.a	ENSGT01030000234566.e.b.b.b.b	ENSGT00940000157297.n.a	ENSGT00940000159803.m	ENSGT00940000160622.`b.b	ENSGT00530000063529.B.b	ENSGT00940000162717.a	ENSGT00940000159316.xb.b	ENSGT01090000260082.d.a.a.d.c	ENSGT00940000166318.b	ENSGT00940000154633.jd	ENSGT00940000154336.qd #22	ENSGT00940000153259.a.a.a.c	ENSGT00940000155516.u.c	ENSGT00940000160157.l	ENSGT00940000153168.A.g	ENSGT00940000167491.f	ENSGT00940000160128.cb.a	ENSGT00940000161362.c	ENSGT00730000111220.m.a.a	ENSGT00940000165703.e	ENSGT00390000002414.ac	ENSGT01030000234513.B.a.d.b	ENSGT01050000244864.B.a.h.c	ENSGT00940000160693.e	ENSGT00940000159451.e	ENSGT00940000158347.y.d
Coho salmon	MODERN SPECIES	20	ENSOKIG00005027264	ENSOKIG00005027024	apool (ENSOKIG00005026984)	agtr2 (ENSOKIG00005026971)	ENSOKIG00005026960	TENM1 (ENSOKIG00005026059)	smarca1 (ENSOKIG00005025406)	ENSOKIG00005025305	ENSOKIG00005025069	amer1 (ENSOKIG00005025000)	mtmr8 (ENSOKIG00005024659)	ZC3H12B (ENSOKIG00005049869)	fdx1b (ENSOKIG00005049865)	ENSOKIG00005049857	ENSOKIG00005049812	ENSOKIG00005049770 #22	ENSOKIG00005049759	AR (ENSOKIG00005049638)	OPHN1 (ENSOKIG00005049557)	yipf6 (ENSOKIG00005049521)	ENSOKIG00005049513	efnb1 (ENSOKIG00005049498)	ENSOKIG00005049486	nalf2 (ENSOKIG00005049481)	eda (ENSOKIG00005049469)	wnt11f2 (ENSOKIG00005049455)	igbp1 (ENSOKIG00005049447)	gjb1a (ENSOKIG00005049439)	ENSOKIG00005049435	ZMYM3 (ENSOKIG00005049316)	tbc1d8b (ENSOKIG00005049187)
Otomorpha	ANCESTRAL SPECIES	85	ENSGT00530000063666.a	ENSGT01050000244888.b.a.c.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803	ENSGT00940000160622.`b.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b.a	ENSGT00940000162717	ENSGT00390000014785	ENSGT01090000260082.d.a.a.d	ENSGT00940000166318.b	ENSGT00940000154633.jd	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516.u	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000167491	ENSGT00390000002197	ENSGT00940000160622.`b.a	ENSGT00940000153902.b.b	ENSGT00980000202377	ENSGT00390000018389	ENSGT01090000260082.d.a.a.c	ENSGT00940000155516.v	ENSGT00940000160128	ENSGT00940000161362
Clupeiformes	ANCESTRAL SPECIES	367										ENSGT00390000002845	ENSGT00390000014889.b	ENSGT00940000157753	ENSGT01090000260082.d.a.a.d	ENSGT00940000166318.b	ENSGT00940000154633.jd	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516.u	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000167491	ENSGT00390000002197
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	16	MCF2 (ENSDCDG00000035122)	f9b (ENSDCDG00000035203)	fgf13b (ENSDCDG00000035205)	tmtops3b (ENSDCDG00000035213)	ENSDCDG00000035221	htatsf1 (ENSDCDG00000035222)	ENSDCDG00000035224	ENSDCDG00000035227	fhl1b (ENSDCDG00000013940)	txndc15 (ENSDCDG00000013961)	zgc:77058 (ENSDCDG00000013989)	ddx46 (ENSDCDG00000014133)	msna (ENSDCDG00000015436)	fdx1b (ENSDCDG00000019095)	ENSDCDG00000019097	ENSDCDG00000019110 #22	ENSDCDG00000019200	AR (ENSDCDG00000019212)	OPHN1 (ENSDCDG00000019380)	yipf6 (ENSDCDG00000022325)	stard8 (ENSDCDG00000022374) ##31	ENSDCDG00000023802	steep1 (ENSDCDG00000023805)	efnb1 (ENSDCDG00000023808)	PCYOX1L (ENSDCDG00000023811)	cltca (ENSDCDG00000023857)	ptrh2 (ENSDCDG00000026632)	VMP1 (ENSDCDG00000026638)	ENSDCDG00000026943	rnft1 (ENSDCDG00000026969)	med13a (ENSDCDG00000026998)
Denticle herring	MODERN SPECIES	16	ENSDCDG00000034028	tppp2 (ENSDCDG00000034026)	tagln2 (ENSDCDG00000034025)	ENSDCDG00000034024	apoa1a (ENSDCDG00000034023)	pafah1b2 (ENSDCDG00000034022)	mpzl2b (ENSDCDG00000034021)	mpzl2b (ENSDCDG00000034018)	scn4bb (ENSDCDG00000034015)	tmprss4b (ENSDCDG00000034010)	ENSDCDG00000034005	gdf9 (ENSDCDG00000033987)	ENSDCDG00000033976	ENSDCDG00000033975	ins (ENSDCDG00000033972)	GPR83 (ENSDCDG00000033968) #22	panx1b (ENSDCDG00000033966)	epd (ENSDCDG00000033965)	ENSDCDG00000033963	myo1ca (ENSDCDG00000033496)	ENSDCDG00000033452	dpf2 (ENSDCDG00000033449)	cdc42ep2 (ENSDCDG00000033447)	SPTBN2 (ENSDCDG00000033398)	LTBP3 (ENSDCDG00000033382)	ENSDCDG00000033378	ENSDCDG00000033375	ENSDCDG00000033374	ENSDCDG00000033367	WDR44 (ENSDCDG00000033346)	zgc:163098 (ENSDCDG00000033330)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	24	aldh3a2b (ENSCHAG00000000308)	ca4c (ENSCHAG00000000478)	asl (ENSCHAG00000001443)	tpst1l (ENSCHAG00000006271)	ENSCHAG00000006284	TRAPPC14 (ENSCHAG00000006405)	st6gal1 (ENSCHAG00000006424)	ENSCHAG00000006450	rap1gap2b (ENSCHAG00000006494)	txndc15 (ENSCHAG00000006774)	zgc:77058 (ENSCHAG00000006795)	ddx46 (ENSCHAG00000006882)	msna (ENSCHAG00000009089)	fdx1b (ENSCHAG00000010749)	ENSCHAG00000010785	ENSCHAG00000010802 #22	ENSCHAG00000010842	AR (ENSCHAG00000010856)	OPHN1 (ENSCHAG00000011103)	yipf6 (ENSCHAG00000011807)	stard8 (ENSCHAG00000011905) ##31	ENSCHAG00000014676	steep1 (ENSCHAG00000014699)	efnb1 (ENSCHAG00000014716)	ENSCHAG00000014763 ##31	nbeaa (ENSCHAG00000014872)	ENSCHAG00000017818	ENSCHAG00000017823	dclk1a (ENSCHAG00000017838)	ccdc169 (ENSCHAG00000017865)	sparta (ENSCHAG00000017873)
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000026525	ENSCHAG00000026044	ENSCHAG00000025973	ENSCHAG00000025968	tagln2 (ENSCHAG00000025963)	ENSCHAG00000025960	tppp2 (ENSCHAG00000025954)	apoa1a (ENSCHAG00000025950)	pafah1b2 (ENSCHAG00000025945)	mpzl2b (ENSCHAG00000025941)	scn4bb (ENSCHAG00000025940)	ENSCHAG00000025934	tmprss13b (ENSCHAG00000025930)	ENSCHAG00000025928	ins (ENSCHAG00000025924)	ENSCHAG00000025921 #22	panx1b (ENSCHAG00000025918)	epd (ENSCHAG00000025914)	epd (ENSCHAG00000025908)	ENSCHAG00000025902	myo1ca (ENSCHAG00000024980)	ENSCHAG00000024892	FRY (ENSCHAG00000014269)	rxfp2a (ENSCHAG00000013957)	b3glctb (ENSCHAG00000013769)	alox5ap (ENSCHAG00000013757)	ENSCHAG00000013712	katnal1 (ENSCHAG00000013431)	ubl3a (ENSCHAG00000013367)	or30bv1 (ENSCHAG00000013348)	or30bv1 (ENSCHAG00000013329)
Otophysi	ANCESTRAL SPECIES	109	ENSGT00940000160128	ENSGT00940000155516.v	ENSGT01090000260082.d.a.a.c	ENSGT00390000018389	ENSGT00980000202377	ENSGT00940000153902.b.b	ENSGT00940000160622.`b.a	ENSGT00390000002197	ENSGT00940000167491	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000153168.A	ENSGT00940000160157	ENSGT00940000155516.u	ENSGT00940000153259.a.a.a	ENSGT00940000174790	ENSGT00940000154336 #22	ENSGT00940000154633.jd	ENSGT00940000166318.b	ENSGT01090000260082.d.a.a.d	ENSGT00390000014785	ENSGT00940000162717	ENSGT00940000153902.b.a	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000160622.`b.b	ENSGT00940000159803	ENSGT00940000157297	ENSGT01030000234566.e.b.b.b	ENSGT00940000155920	ENSGT01050000244888.b.a.c.a	ENSGT00530000063666.a
Cyprinoidei	ANCESTRAL SPECIES	16	ENSGT00530000063666.a	ENSGT00390000005094.g	ENSGT00940000164304	ENSGT00390000017980	ENSGT00940000160515	ENSGT00660000097471	ENSGT00940000154442	ENSGT00940000160994.h	ENSGT01070000253816.a.b	ENSGT00940000156455	ENSGT00940000166502	ENSGT00940000161656	ENSGT00980000198690	ENSGT00940000164220.b.b	ENSGT00980000198660.a	ENSGT00940000154336 #22	ENSGT00940000154633.jd	ENSGT00940000166318.b	ENSGT01090000260082.d.a.a.d	ENSGT00390000014785	ENSGT00940000162717	ENSGT00940000153902.b.a	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000160622.`b.b	ENSGT00940000159803	ENSGT00940000157297	ENSGT01030000234566.e.b.b.b	ENSGT00940000155920	ENSGT01100000263476.E.b.b.a.a.b	ENSGT00940000156279.e
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	31	ENSGT00940000164237.l	ENSGT00530000063666.a.y	ENSGT00390000005094.g.m.b	ENSGT00940000164304.f	ENSGT00390000017980.o	ENSGT00940000160515.d	ENSGT00660000097471.b	ENSGT00940000154442.id	ENSGT01070000253816.a.b	ENSGT00940000156455.a	ENSGT00940000166502.b	ENSGT00940000161656	ENSGT00980000198690.d	ENSGT00940000164220.b.b.d	ENSGT00980000198660.a.a	ENSGT00940000154336.bd #22	ENSGT00940000154633.jd.a	ENSGT01090000260082.d.a.a.d.e	ENSGT00390000014785.r	ENSGT00940000159316.u.a	ENSGT00390000018389.j	ENSGT00940000157443.m.b	ENSGT00940000162717.d	ENSGT00940000153902.b.a.h	ENSGT00530000063529.B.c	ENSGT00940000160622.`b.b	ENSGT00940000159803.k	ENSGT00940000157297.p.a	ENSGT01030000234566.e.b.b.b.n	ENSGT00940000155920.p.a	ENSGT00980000198660.a.b.b
Goldfish	MODERN SPECIES	3271	zdhhc15a (ENSCARG00000069804)	CNGA2 (ENSCARG00000069819)	chmp1b (ENSCARG00000069838)	BRWD3 (ENSCARG00000069886)	ENSCARG00000070003	apool (ENSCARG00000070006)	npas2 (ENSCARG00000070014)	vma21 (ENSCARG00000070022)	mtnr1c (ENSCARG00000070026)	nono (ENSCARG00000070037)	tnfsf10l4 (ENSCARG00000070042)	aifm1 (ENSCARG00000070066)	glra4b (ENSCARG00000061748)	RPL36AL (ENSCARG00000061757)	ENSCARG00000061786	GPR83 (ENSCARG00000061794) #22	ENSCARG00000061812	ENSCARG00000061817	msna (ENSCARG00000061880)	ENSCARG00000063364	ZC3H12B (ENSCARG00000063443)	zc4h2 (ENSCARG00000063508)	shisa2a (ENSCARG00000063527)	mtmr8 (ENSCARG00000063554)	asb12a (ENSCARG00000063721)	amer1 (ENSCARG00000063729)	ARHGEF9 (ENSCARG00000063766)	ENSCARG00000064069	smarca1 (ENSCARG00000064151)	TENM1 (ENSCARG00000064362)	ENSCARG00000064642
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000164237.l	ENSGT00530000063666.a.y	ENSGT00390000005094.g.m.b	ENSGT00940000164304.f	ENSGT00390000017980.o	ENSGT00940000160515.d	ENSGT00660000097471.b	ENSGT00940000154442.id	ENSGT01070000253816.a.b	ENSGT00940000156455.a	ENSGT00940000166502.b	ENSGT00940000161656	ENSGT00980000198690.d	ENSGT00940000164220.b.b.d	ENSGT00980000198660.a.a.b	ENSGT00940000154336.bd #22	ENSGT00940000154633.jd.a	ENSGT01090000260082.d.a.a.d.e	ENSGT00390000014785.r	ENSGT00940000159316.u.a	ENSGT00390000018389.j	ENSGT00940000157443.m.b	ENSGT00940000162717.d	ENSGT00940000153902.b.a.h	ENSGT00530000063529.B.c	ENSGT00940000160622.`b.b.a	ENSGT00940000159803.k	ENSGT00940000157297.p.a	ENSGT01030000234566.e.b.b.b.n	ENSGT00940000155920.p.a	ENSGT00980000198660.a.b.b
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	2640																GPR83 (ENSSGRG00000010525) #22
Golden-line barbel	MODERN SPECIES	2260																GPR83 (ENSSGRG00000015425) #22
Common carp reference	MODERN SPECIES	7	ENSCCRG00000026711	ENSCCRG00000077866	apool (ENSCCRG00000026701)	ENSCCRG00000057416	npas2 (ENSCCRG00000026695)	vma21 (ENSCCRG00000048634)	mtnr1c (ENSCCRG00000063256)	nono (ENSCCRG00000070158)	tnfsf10l4 (ENSCCRG00000019383)	aifm1 (ENSCCRG00000019418)	glra4b (ENSCCRG00000051127)	rpl36a (ENSCCRG00000051128)	ENSCCRG00000052994	ENSCCRG00000059509	ENSCCRG00000034576	ENSCCRG00000031122 #22	ENSCCRG00000071006	msna (ENSCCRG00000000426)	las1l (ENSCCRG00000081776)	ZC3H12B (ENSCCRG00000047506)	zc4h2 (ENSCCRG00000055735)	shisa2a (ENSCCRG00000027508)	mtmr8 (ENSCCRG00000045591)	asb12a (ENSCCRG00000045268)	amer1 (ENSCCRG00000082144)	ENSCCRG00000044242	ENSCCRG00000061706	ENSCCRG00000065874	smarca1 (ENSCCRG00000019591)	ENSCCRG00000002235	sh2d1aa (ENSCCRG00000002452)
Cyprininae	ANCESTRAL SPECIES	50	ENSGT00950000183107.a.b.b.t	ENSGT00940000164237.k	ENSGT00530000063666.a.z	ENSGT00390000005094.g.m.a	ENSGT00940000164304.e	ENSGT00390000017980.p	ENSGT00940000160515.c	ENSGT00660000097471.a	ENSGT00940000154442.hd	ENSGT00940000160994.h	ENSGT00940000156455.b	ENSGT00940000166502.a	ENSGT00980000198690.c	ENSGT00940000164220.b.b.c.b	ENSGT00940000162079.m	ENSGT00940000154336.cd #22	ENSGT00940000154633.jd.b	ENSGT00940000166318.b	ENSGT01090000260082.d.a.a.d.f	ENSGT00390000014785.q	ENSGT00940000159316.u.b	ENSGT00390000018389.i	ENSGT00940000157443.m.a	ENSGT00940000162717.c	ENSGT00940000153902.b.a.g	ENSGT00530000063529.B.d	ENSGT00940000154103.b	ENSGT00940000159803.l	ENSGT00940000157297.p.b	ENSGT01030000234566.e.b.b.b.m	ENSGT00940000155920.p.b
Goldfish	MODERN SPECIES	23	apool (ENSCARG00000058031)	ENSCARG00000058056	npas2 (ENSCARG00000058081)	vma21 (ENSCARG00000058119)	MEL1c (ENSCARG00000058151)	zgc:113208 (ENSCARG00000058165)	nono (ENSCARG00000058178)	casp22 (ENSCARG00000058214)	aifm1 (ENSCARG00000058306)	glra4b (ENSCARG00000062179)	rpl36a (ENSCARG00000062271)	ENSCARG00000062320	ENSCARG00000062350	ENSCARG00000062377	ENSCARG00000062391	GPR83 (ENSCARG00000062400) #22	ENSCARG00000062420	fdx1b (ENSCARG00000062435)	msna (ENSCARG00000062618)	las1l (ENSCARG00000065090)	ZC3H12B (ENSCARG00000065110)	zc4h2 (ENSCARG00000065140)	shisa2a (ENSCARG00000065150)	mtmr8 (ENSCARG00000065159)	asb12a (ENSCARG00000065174)	amer1 (ENSCARG00000065182)	ARHGEF9 (ENSCARG00000065218)	ENSCARG00000065339	smarca1 (ENSCARG00000065564)	TENM1 (ENSCARG00000068099)	sh2d1aa (ENSCARG00000068379)
Cyprininae_a	ANCESTRAL SPECIES	42	ENSGT00950000183107.a.b.b.t	ENSGT00940000164237.k	ENSGT00530000063666.a.z	ENSGT00390000005094.g.m.a	ENSGT00940000164304.e	ENSGT00390000017980.p	ENSGT00940000160515.c	ENSGT00660000097471.a	ENSGT00940000154442.hd	ENSGT00940000160994.h	ENSGT00940000156455.b	ENSGT00940000166502.a	ENSGT00980000198690.c	ENSGT00940000164220.b.b.c.b	ENSGT00940000162079.m	ENSGT00940000154336.cd #22	ENSGT00940000154633.jd.b	ENSGT00940000166318.b	ENSGT01090000260082.d.a.a.d.f	ENSGT00390000014785.q	ENSGT00940000159316.u.b	ENSGT00390000018389.i	ENSGT00940000157443.m.a	ENSGT00940000162717.c	ENSGT00940000153902.b.a.g	ENSGT00530000063529.B.d	ENSGT00940000160622.`b.b.b	ENSGT00940000159803.l	ENSGT00940000157297.p.b	ENSGT01030000234566.e.b.b.b.m	ENSGT00940000155920.p.b
Common carp reference	MODERN SPECIES	15	ENSCCRG00000026054	npas2 (ENSCCRG00000026033)	vma21 (ENSCCRG00000055531)	mtnr1c (ENSCCRG00000027189)	zgc:113208 (ENSCCRG00000027192)	nono (ENSCCRG00000019374)	ENSCCRG00000000117	aifm1 (ENSCCRG00000005144)	glra4b (ENSCCRG00000008120)	ENSCCRG00000072055	ENSCCRG00000057065	ENSCCRG00000069253	ENSCCRG00000056125	ENSCCRG00000082166	ENSCCRG00000015865	ENSCCRG00000060426 #22	ENSCCRG00000067231	msna (ENSCCRG00000040914)	fdx1b (ENSCCRG00000040877)	las1l (ENSCCRG00000047517)	ZC3H12B (ENSCCRG00000068343)	zc4h2 (ENSCCRG00000082739)	shisa2a (ENSCCRG00000047504)	mtmr8 (ENSCCRG00000027532)	asb12a (ENSCCRG00000072190)	amer1 (ENSCCRG00000027506)	ENSCCRG00000028321	ENSCCRG00000028344	ENSCCRG00000062320	smarca1 (ENSCCRG00000044757)	ENSCCRG00000066168
Golden-line barbel	MODERN SPECIES	229	CNGA2 (ENSSGRG00000019081)	BRWD3 (ENSSGRG00000019125)	ENSSGRG00000021292	ENSSGRG00000021535	npas2 (ENSSGRG00000021536)	vma21 (ENSSGRG00000021538)	ENSSGRG00000021539	zgc:113208 (ENSSGRG00000021540)	nono (ENSSGRG00000021541)	casp22 (ENSSGRG00000021542)	aifm1 (ENSSGRG00000021572)	glra4b (ENSSGRG00000022903)	ENSSGRG00000022926	ENSSGRG00000022927	ENSSGRG00000022934	GPR83 (ENSSGRG00000022935) #22	fdx1b (ENSSGRG00000022938)	msna (ENSSGRG00000022944)	ENSSGRG00000025297	ZC3H12B (ENSSGRG00000025299)	zc4h2 (ENSSGRG00000025300)	shisa2a (ENSSGRG00000025303)	mtmr8 (ENSSGRG00000025309)	amer1 (ENSSGRG00000025350)	ENSSGRG00000025353	ENSSGRG00000025562	smarca1 (ENSSGRG00000025588)	TENM1 (ENSSGRG00000027249)	sh2d1aa (ENSSGRG00000027250)	ENSSGRG00000027251	ENSSGRG00000027254
Zebrafish	MODERN SPECIES	20	ENSDARG00000010331	npas2 (ENSDARG00000016536)	vma21 (ENSDARG00000093945)	mtnr1c (ENSDARG00000035609)	zgc:113208 (ENSDARG00000035610)	nono (ENSDARG00000020482)	casp22 (ENSDARG00000091926)	tnfsf10l4 (ENSDARG00000058068)	aifm1 (ENSDARG00000058088)	glra4b (ENSDARG00000058103)	rpl36a (ENSDARG00000058105)	ENSDARG00000068624	ENSDARG00000092602	ENSDARG00000092228	ENSDARG00000094418	GPR83 (ENSDARG00000058120) #22	ENSDARG00000093708	fdx1b (ENSDARG00000038956)	msna (ENSDARG00000058128)	las1l (ENSDARG00000062457)	ZC3H12B (ENSDARG00000062463)	zc4h2 (ENSDARG00000015314)	shisa2a (ENSDARG00000034138)	mtmr8 (ENSDARG00000008592)	asb12a (ENSDARG00000017086)	amer1 (ENSDARG00000079624)	ENSDARG00000061746	ENSDARG00000076998	ENSDARG00000093081	smarca1 (ENSDARG00000012776)	TENM1 (ENSDARG00000003403)
Characiphysae	ANCESTRAL SPECIES	183									ENSGT00390000002197	ENSGT00940000167491	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000153168.A	ENSGT00940000160157	ENSGT00940000155516.u.h	ENSGT00940000153259.a.a.a	ENSGT00940000154336 #22	ENSGT00940000154633.jd	ENSGT00940000166318.b	ENSGT01090000260082.d.a.a.d	ENSGT00390000014785	ENSGT00940000159316	ENSGT01090000259985.b.a.a.b.f	ENSGT00940000162717	ENSGT00940000153902.b.a	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000160622.`b.b	ENSGT00940000159803
Characiphysae_b	ANCESTRAL SPECIES	184									ENSGT00390000002197	ENSGT00940000167491	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000153168.A	ENSGT00940000160157	ENSGT00940000155516.u.h	ENSGT00940000153259.a.a.a	ENSGT00940000154336 #22	ENSGT00940000154633.jd	ENSGT00940000166318.b	ENSGT01090000260082.d.a.a.d	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000157443	ENSGT00940000162717	ENSGT00940000153902.b.a	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000159803
Characoidei	ANCESTRAL SPECIES	135	ENSGT00390000006915.c.d.b	ENSGT01090000260444	ENSGT00940000155128.a.a.b	ENSGT00940000163331.a.a	ENSGT00940000155242	ENSGT00990000205544	ENSGT00390000002414	ENSGT00940000165703	ENSGT00390000002197	ENSGT00940000167491	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000153168.A	ENSGT00940000160157	ENSGT00940000155516.u.h	ENSGT00940000153259.a.a.a	ENSGT00940000154336 #22	ENSGT00940000154633.jd	ENSGT00940000166318.b	ENSGT01090000260082.d.a.a.d	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000157443	ENSGT00940000162717	ENSGT00940000153902.b.a	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000160622.`b.b	ENSGT00940000159803
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	765															ENSPNAG00000008690	ENSPNAG00000001161 #22	ENSPNAG00000001165	fdx1b (ENSPNAG00000006459)	msna (ENSPNAG00000008748)
Red-bellied piranha	MODERN SPECIES	191		ENSPNAG00000018044	ENSPNAG00000018048	ENSPNAG00000018164	ENSPNAG00000018177	ENSPNAG00000018326	ENSPNAG00000018348	atpv0e2 (ENSPNAG00000018358)	ENSPNAG00000018376	her13 (ENSPNAG00000018399)	her8.2 (ENSPNAG00000018417)	ENSPNAG00000018499	FUT4 (ENSPNAG00000018534)	ankrd49 (ENSPNAG00000003533) #21	ENSPNAG00000018548	GPR83 (ENSPNAG00000018558) #22	IWS1 (ENSPNAG00000006726)	cbln2a (ENSPNAG00000018614)	socs6b (ENSPNAG00000018628)	crispld1b (ENSPNAG00000018672)	PI15 (ENSPNAG00000018689)	jph1b (ENSPNAG00000018704)	TMEM70 (ENSPNAG00000018710)	elocb (ENSPNAG00000018721)	ube2wa (ENSPNAG00000018732)	rdh10b (ENSPNAG00000018764)	rpl7 (ENSPNAG00000018788)	ENSPNAG00000018807	trpa1a (ENSPNAG00000019107)	ENSPNAG00000019135	shhb (ENSPNAG00000019147)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000032999	ENSAMXG00000044101	rhogc (ENSAMXG00000036821)	taf1 (ENSAMXG00000007593)	igbp1 (ENSAMXG00000036086)	wnt11f2 (ENSAMXG00000007607)	eda (ENSAMXG00000030910)	efnb1 (ENSAMXG00000041759)	steep1 (ENSAMXG00000043165)	ENSAMXG00000011465	stard8 (ENSAMXG00000011438) ##31	yipf6 (ENSAMXG00000040444)	OPHN1 (ENSAMXG00000011407)	AR (ENSAMXG00000011395)	ENSAMXG00000041491	ENSAMXG00000040888 #22	ENSAMXG00000011380	ENSAMXG00000011359	ENSAMXG00000034252	msna (ENSAMXG00000011348)	las1l (ENSAMXG00000011342)	ZC3H12B (ENSAMXG00000011328)	zc4h2 (ENSAMXG00000043510)	shisa2a (ENSAMXG00000011301)	mtmr8 (ENSAMXG00000042036)	asb12a (ENSAMXG00000011264)	amer1 (ENSAMXG00000035962)	ENSAMXG00000041848	ENSAMXG00000029445	hsf2 (ENSAMXG00000031974)	serinc1 (ENSAMXG00000039252)
Mexicana tetra	MODERN SPECIES	8	MCHR2 (ENSAMXG00000008878)	me1 (ENSAMXG00000043852)	prss35 (ENSAMXG00000008842)	SNAP91 (ENSAMXG00000008811)	DOP1A (ENSAMXG00000036553)	ENSAMXG00000030687	ENSAMXG00000030154	atpv0e2 (ENSAMXG00000043417)	ENSAMXG00000008750	HES6 (ENSAMXG00000039101)	her8.2 (ENSAMXG00000034417)	ENSAMXG00000042932	FUT4 (ENSAMXG00000008677)	ankrd49 (ENSAMXG00000008670) #21	mre11a (ENSAMXG00000032784)	GPR83 (ENSAMXG00000008631) #22	ENSAMXG00000030502	fgb (ENSAMXG00000018060)	fga (ENSAMXG00000032896)	ENSAMXG00000039449	ENSAMXG00000036866	ENSAMXG00000016289	ENSAMXG00000031338	ENSAMXG00000040704	ENSAMXG00000039091	ENSAMXG00000042439	ENSAMXG00000029603	ENSAMXG00000029878	ENSAMXG00000038313	mbnl1 (ENSAMXG00000011855)	cul3a (ENSAMXG00000011867)
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	1266													ENSEEEG00000005698	ENSEEEG00000005699	ENSEEEG00000005700	ENSEEEG00000005701 #22
Electric eel	MODERN SPECIES	163																GPR83 (ENSEEEG00000023870) #22	ENSEEEG00000023875	ENSEEEG00000023877	IWS1 (ENSEEEG00000023885)	cbln2a (ENSEEEG00000023889)	socs6b (ENSEEEG00000023892)	crispld1b (ENSEEEG00000023893)	PI15 (ENSEEEG00000023896)	jph1b (ENSEEEG00000023898)	TMEM70 (ENSEEEG00000023900)	elocb (ENSEEEG00000023901)	ube2wa (ENSEEEG00000023902)	rdh10b (ENSEEEG00000023904)	rpl7 (ENSEEEG00000023909)	ENSEEEG00000023914	trpa1a (ENSEEEG00000023919)
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	20	ENSIPUG00000016882	ARHGEF9 (ENSIPUG00000016829)	amer1 (ENSIPUG00000016819)	mtmr8 (ENSIPUG00000016796)	shisa2a (ENSIPUG00000016787)	zc4h2 (ENSIPUG00000016771)	zc3h12b (ENSIPUG00000016745)	LAS1L (ENSIPUG00000016712)	msna (ENSIPUG00000016680)	ENSIPUG00000016670	stard8 (ENSIPUG00000016617) ##31	yipf6 (ENSIPUG00000016602)	OPHN1 (ENSIPUG00000016491)	ar (ENSIPUG00000016473)	eda2r (ENSIPUG00000016451)	ENSIPUG00000016440 #22	ENSIPUG00000016426	steep1 (ENSIPUG00000016369)	fdx1b (ENSIPUG00000016350)	ENSIPUG00000016338	efnb1 (ENSIPUG00000016317)	ENSIPUG00000016309	eda (ENSIPUG00000016237)	wnt11f2 (ENSIPUG00000016221)	igbp1 (ENSIPUG00000016215)	zgc:158432 (ENSIPUG00000016197)	taf1 (ENSIPUG00000016148)	nlgn3b (ENSIPUG00000016141)	ENSIPUG00000016133	ercc6l (ENSIPUG00000016117)	rnf128a (ENSIPUG00000016103)
Channel catfish	MODERN SPECIES	12	PRSS35 (ENSIPUG00000001019)	me1 (ENSIPUG00000001029)	prdm13 (ENSIPUG00000001055)	tstd3 (ENSIPUG00000001066)	usp45 (ENSIPUG00000001071)	atpv0e2 (ENSIPUG00000001093)	ENSIPUG00000001103	ENSIPUG00000001119	ENSIPUG00000001128	her13 (ENSIPUG00000001144)	her8.2 (ENSIPUG00000001150)	ENSIPUG00000001156	FUT4 (ENSIPUG00000001165)	ankrd49 (ENSIPUG00000001188) #21	mre11a (ENSIPUG00000001198)	GPR83 (ENSIPUG00000001217) #22	ENSIPUG00000001268	cbln2a (ENSIPUG00000001325)	socs6b (ENSIPUG00000001391)	crispld1b (ENSIPUG00000001394)	pi15 (ENSIPUG00000001421)	jph1b (ENSIPUG00000001434)	rpl7 (ENSIPUG00000001456)	rdh10b (ENSIPUG00000001499)	ENSIPUG00000001504	elocb (ENSIPUG00000001519)	tmem70 (ENSIPUG00000001521)	ENSIPUG00000001530	trpa1a (ENSIPUG00000001556)	ENSIPUG00000001682	shhb (ENSIPUG00000001720)
Osteoglossiformes	ANCESTRAL SPECIES	14	ENSGT00940000156576	ENSGT00940000161147	ENSGT00390000012961	ENSGT00510000047611	ENSGT00940000157424	ENSGT00940000174692	ENSGT00940000159817	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074.e.a.a	ENSGT00950000183168.D	ENSGT00940000160158	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A.a	ENSGT00940000158517	ENSGT00390000000303	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT01050000244891.B	ENSGT00940000154174.db	ENSGT00940000154981.bb.b
P. kingsleyae	MODERN SPECIES	46	CLPB (ENSPKIG00000022857)	stard10 (ENSPKIG00000022830)	ARAP1 (ENSPKIG00000022707)	ENSPKIG00000022651	ENSPKIG00000022639	ENSPKIG00000022627	ENSPKIG00000022614	mtmr2 (ENSPKIG00000022570)	cep57 (ENSPKIG00000022533)	fam76b (ENSPKIG00000022497)	sesn3 (ENSPKIG00000022463)	AMOTL1 (ENSPKIG00000022430)	FUT4 (ENSPKIG00000022413)	ankrd49 (ENSPKIG00000022399) #21	mre11a (ENSPKIG00000022353)	GPR83 (ENSPKIG00000022322) #22	panx1a (ENSPKIG00000022305)	HEPH (ENSPKIG00000022257)	ENSPKIG00000022226	ENSPKIG00000022208	ENSPKIG00000022195	med17 (ENSPKIG00000022155)	ENSPKIG00000022082	SMCO4 (ENSPKIG00000022063)	ENSPKIG00000022039	tekt1 (ENSPKIG00000021946)	inpp5ka (ENSPKIG00000021858)	pitpnaa (ENSPKIG00000021478)	SLC43A2 (ENSPKIG00000021292)	ENSPKIG00000021264	ENSPKIG00000021252
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	5	TENM1 (ENSSFOG00015009122)	smarca1 (ENSSFOG00015009043)	ENSSFOG00015029964	ARHGEF9 (ENSSFOG00015027567)	amer1 (ENSSFOG00015008892)	asb12a (ENSSFOG00015008890)	mtmr8 (ENSSFOG00015008844)	shisa2a (ENSSFOG00015008823)	ZC4H2 (ENSSFOG00015008792)	ZC3H12B (ENSSFOG00015008769)	las1l (ENSSFOG00015008737)	msna (ENSSFOG00015008662)	fdx1b (ENSSFOG00015025806)	ENSSFOG00015008601	ENSSFOG00015025943	ENSSFOG00015008557 #22	ENSSFOG00015008531	AR (ENSSFOG00015008484)	OPHN1 (ENSSFOG00015008419)	stard8 (ENSSFOG00015008333) ##31	ENSSFOG00015008320	steep1 (ENSSFOG00015008274)	efnb1 (ENSSFOG00015007856)	zgc:113274 (ENSSFOG00015007876)	nalf2 (ENSSFOG00015028930)	eda (ENSSFOG00015027142)	wnt11f2 (ENSSFOG00015008099)	igbp1 (ENSSFOG00015008115)	ENSSFOG00015008176	gjb1a (ENSSFOG00015008517)	ENSSFOG00015028079
Asian bonytongue	MODERN SPECIES	1	inppl1a (ENSSFOG00015016243)	phox2a (ENSSFOG00015026369)	CLPB (ENSSFOG00015016160)	stard10 (ENSSFOG00015024322)	ARAP1 (ENSSFOG00015016004)	PDE2A (ENSSFOG00015025589)	mtmr2 (ENSSFOG00015015953)	cep57 (ENSSFOG00015015937)	fam76b (ENSSFOG00015028364)	sesn3 (ENSSFOG00015025832)	ENSSFOG00015015880	AMOTL1 (ENSSFOG00015015786)	FUT4 (ENSSFOG00015033363)	ankrd49 (ENSSFOG00015025398) #21	mre11a (ENSSFOG00015015723)	GPR83 (ENSSFOG00015015701) #22	panx1a (ENSSFOG00015015677)	ENSSFOG00015015572	ENSSFOG00015015545	ENSSFOG00015015532	ENSSFOG00015027852	med17 (ENSSFOG00015015449)	ENSSFOG00015015410	SMCO4 (ENSSFOG00015015402)	SLC36A4 (ENSSFOG00015015361)	ENSSFOG00015015335	FAT3 (ENSSFOG00015015280)	ENSSFOG00015015259	SMCO1 (ENSSFOG00015015249)	efhd1 (ENSSFOG00015026745)	kcnj13 (ENSSFOG00015015213)
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	673	arhgef9b (ENSLOCG00000014608)	amer1 (ENSLOCG00000014609)	asb12a (ENSLOCG00000014613)	mtmr8 (ENSLOCG00000014615)	shisa2a (ENSLOCG00000014619)	ENSLOCG00000014620	ENSLOCG00000014623	zc4h2 (ENSLOCG00000014627)	ZC3H12B (ENSLOCG00000014631)	las1l (ENSLOCG00000014635)	msna (ENSLOCG00000014640)	fdx1b (ENSLOCG00000014648)	ENSLOCG00000014649	ENSLOCG00000014654	HEPH (ENSLOCG00000014659)	ENSLOCG00000014665 #22	ENSLOCG00000014669	OPHN1 (ENSLOCG00000014675)	AR (ENSLOCG00000014680)	yipf6 (ENSLOCG00000014686)	stard8 (ENSLOCG00000014688) ##31	ENSLOCG00000014695	steep1 (ENSLOCG00000014705)	efnb1 (ENSLOCG00000014708)	nalf2 (ENSLOCG00000014712)	eda (ENSLOCG00000014715)	ENSLOCG00000014717	ENSLOCG00000014722	wnt11f2 (ENSLOCG00000014724)	igbp1 (ENSLOCG00000014729)	ENSLOCG00000014734
Spotted gar	MODERN SPECIES	669	inppl1a (ENSLOCG00000007744)	phox2a (ENSLOCG00000007728)	CLPB (ENSLOCG00000007715)	stard10 (ENSLOCG00000007700)	ARAP1 (ENSLOCG00000007666)	PDE2A (ENSLOCG00000007646)	mtmr2 (ENSLOCG00000007628)	cep57 (ENSLOCG00000007612)	fam76b (ENSLOCG00000007600)	sesn3 (ENSLOCG00000007583)	cwc15 (ENSLOCG00000007570)	AMOTL1 (ENSLOCG00000007548)	FUT4 (ENSLOCG00000018021)	ankrd49 (ENSLOCG00000007534) #21	mre11a (ENSLOCG00000007516)	GPR83 (ENSLOCG00000007502) #22	panx1a (ENSLOCG00000007487)	ENSLOCG00000007464	ENSLOCG00000007453	ENSLOCG00000007439	ENSLOCG00000007433	ENSLOCG00000007419	med17 (ENSLOCG00000007406)	ENSLOCG00000007382	DEUP1 (ENSLOCG00000007351)	SLC36A4 (ENSLOCG00000007325)	mtnr1bb (ENSLOCG00000007314)	fat3a (ENSLOCG00000007262)	chordc1b (ENSLOCG00000007242)	naalad2 (ENSLOCG00000007231)	NOX4 (ENSLOCG00000007209)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	3	ASB12 (ENSECRG00000010992)	ASB12 (ENSECRG00000010997)	mtmr8 (ENSECRG00000011008)	shisa2a (ENSECRG00000011018)	ENSECRG00000011029	ENSECRG00000011040	zc4h2 (ENSECRG00000011049)	ZC3H12B (ENSECRG00000011055)	ENSECRG00000011061	msna (ENSECRG00000011072)	fdx1b (ENSECRG00000011085)	ENSECRG00000011221	ENSECRG00000011283	ENSECRG00000011431	HEPH (ENSECRG00000009431)	ENSECRG00000009461 #22	EDA2R (ENSECRG00000009484)	AR (ENSECRG00000009512)	OPHN1 (ENSECRG00000009531)	yipf6 (ENSECRG00000009553)	stard8 (ENSECRG00000009588) ##31	ENSECRG00000009637	steep1 (ENSECRG00000009650)	zgc:114188 (ENSECRG00000009665)	efnb1 (ENSECRG00000009675)	nalf2 (ENSECRG00000009685)	eda (ENSECRG00000009693)	ENSECRG00000009721	wnt11f2 (ENSECRG00000009764)	ENSECRG00000009773	ENSECRG00000009780
Reedfish	MODERN SPECIES	12	ENSECRG00000001241	zbtb20 (ENSECRG00000001253)	ENSECRG00000001273	UPK1B (ENSECRG00000001299)	ARHGAP31 (ENSECRG00000001326)	ENSECRG00000001354	b4galt4 (ENSECRG00000001378)	ENSECRG00000001399	mtmr2 (ENSECRG00000001543)	CEP57 (ENSECRG00000001817)	fam76b (ENSECRG00000001845)	cwc15 (ENSECRG00000001885)	AMOTL1 (ENSECRG00000001914)	ANKRD49 (ENSECRG00000001941) #21	mre11a (ENSECRG00000001963)	GPR83 (ENSECRG00000002001) #22	panx1a (ENSECRG00000002011)	HEPH (ENSECRG00000002227)	ENSECRG00000003373	ENSECRG00000003391	siah1 (ENSECRG00000003412)	trim3b (ENSECRG00000003434)	smpd1 (ENSECRG00000003451)	ENSECRG00000003461	ENSECRG00000003470	PKNOX1 (ENSECRG00000003484)	ilk (ENSECRG00000003496)	u2af1 (ENSECRG00000003513)	cbsb (ENSECRG00000003539)	ENSECRG00000003570	RRP1B (ENSECRG00000003580)
Sarcopterygii	ANCESTRAL SPECIES	110													ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000167491	ENSGT00390000002197	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT00940000164773	ENSGT00940000165703	ENSGT00390000002414	ENSGT01030000234621.C.a.a.a	ENSGT00940000166245
Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000158183	ENSGT00390000004986	ENSGT00940000175059	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.D	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000153972.A	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b	ENSGT00940000159621	ENSGT00940000155336	ENSGT01030000234595.A.a
Amniota	ANCESTRAL SPECIES		ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Mammalia	DUPLICATION
Mammalia	ANCESTRAL SPECIES	40	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00940000166548	ENSGT01090000260082.d.a.a.b	ENSGT00940000166318	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.a	ENSGT00390000002414	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b
Theria	DUPLICATION
Theria	ANCESTRAL SPECIES	33	ENSGT00940000159450	ENSGT00950000182962.a.b	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000162865	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b
Marsupialia	ANCESTRAL SPECIES	44				ENSGT00950000183104.B.a.b.c.b	ENSGT00390000008508.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785.u	ENSGT00940000162865	ENSGT00940000166548	ENSGT01090000260082.d.a.a.b	ENSGT00940000166318	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516.o.a	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000159460	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000163293.b	ENSGT00940000156381.b.b	ENSGT00390000010397.a	ENSGT00390000007430
Marsupialia_b	ANCESTRAL SPECIES	34				ENSGT00950000183104.B.a.b.c.b	ENSGT00390000008508.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785.u	ENSGT00940000162865	ENSGT00940000166548	ENSGT01090000260082.d.a.a.b	ENSGT00940000166318	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516.o.a	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000159460	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000163293.b	ENSGT00940000156381.b.b	ENSGT00390000010397.a	ENSGT00390000007430	ENSGT00940000157427
Diprotodontia	ANCESTRAL SPECIES	74					ENSGT00950000183104.B.a.b.c.b	ENSGT00390000008508.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785.u	ENSGT00940000166548	ENSGT01090000260082.d.a.a.b	ENSGT00940000166318	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516.o.a	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000159460	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000163293.b	ENSGT00940000156381.b.b	ENSGT00390000010397.a	ENSGT00390000007430	ENSGT00940000157427
Diprotodontia_a	ANCESTRAL SPECIES	72					ENSGT00950000183104.B.a.b.c.b	ENSGT00390000008508.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785.u	ENSGT00940000166548	ENSGT01090000260082.d.a.a.b	ENSGT00940000166318	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516.o.a	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000159460	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000163293.b	ENSGT00940000156381.b.b	ENSGT00390000010397.a	ENSGT00390000007430	ENSGT00940000157427
koala	MODERN SPECIES	173							ZC3H12B (ENSPCIG00000020264)	ENSPCIG00000020273	ENSPCIG00000020280	ENSPCIG00000020282	ENSPCIG00000020283	ENSPCIG00000020285	ENSPCIG00000020288	ENSPCIG00000030748	ENSPCIG00000009195	ENSPCIG00000008191 #22	ENSPCIG00000010425	ENSPCIG00000010428	ENSPCIG00000011047	ENSPCIG00000036121	ENSPCIG00000030972	OPHN1 (ENSPCIG00000035418)	ENSPCIG00000023742	YIPF6 (ENSPCIG00000023739)	STARD8 (ENSPCIG00000023494) ##31	MID2 (ENSPCIG00000030592)	PSMD10 (ENSPCIG00000030593)	ATG4A (ENSPCIG00000006807)	COL4A5 (ENSPCIG00000026732)	ENSPCIG00000033219	ENSPCIG00000016193
Common wonbat	MODERN SPECIES	1102					ENSVURG00010003859	ENSVURG00010003870	ZC4H2 (ENSVURG00010003881)	ENSVURG00010003891	ZC3H12B (ENSVURG00010003916)	ENSVURG00010004011	ENSVURG00010004056	ENSVURG00010004067	ENSVURG00010004097	ENSVURG00010004162	HEPH (ENSVURG00010004185)	ENSVURG00010004233 #22	ENSVURG00010004253	ENSVURG00010004266	ENSVURG00010004287
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000023345	ENSSHAG00000026577	ENSSHAG00000021274	ENSSHAG00000021562	ENSSHAG00000032072	ENSSHAG00000021696	ENSSHAG00000031230	ENSSHAG00000005698	ENSSHAG00000002960	ENSSHAG00000026751	ENSSHAG00000028076	ENSSHAG00000002045	ENSSHAG00000025531	ENSSHAG00000032086	HEPH (ENSSHAG00000001746)	ENSSHAG00000005289 #22	ENSSHAG00000008441	ENSSHAG00000021777	AR (ENSSHAG00000020690)	OPHN1 (ENSSHAG00000015639)	YIPF6 (ENSSHAG00000028786)	ENSSHAG00000014378 ##31	ENSSHAG00000013756	PSMD10 (ENSSHAG00000013315)	ATG4A (ENSSHAG00000012992)	ENSSHAG00000011659	ENSSHAG00000032039	ENSSHAG00000030647	ENSSHAG00000030973	ENSSHAG00000030922	ENSSHAG00000022639
Opossum	MODERN SPECIES	627	PNCK (ENSMODG00000008192)	DUSP9 (ENSMODG00000008174)	ATP2B3 (ENSMODG00000008152)	ENSMODG00000008043	ENSMODG00000022847	ENSMODG00000007539	ENSMODG00000050925	ENSMODG00000029017	ENSMODG00000022849	ENSMODG00000007462	ENSMODG00000012494	ENSMODG00000012465	ENSMODG00000012459	ENSMODG00000043924	ENSMODG00000027338	ENSMODG00000012445 #22	EDA2R (ENSMODG00000012440)	AR (ENSMODG00000012412)	OPHN1 (ENSMODG00000047154)	YIPF6 (ENSMODG00000011692)	STARD8 (ENSMODG00000011680) ##31	MID2 (ENSMODG00000011644)	ENSMODG00000027596	PSMD10 (ENSMODG00000011621)	ATG4A (ENSMODG00000011603)	ENSMODG00000027952	ENSMODG00000011584	ENSMODG00000011507	ENSMODG00000045883	ENSMODG00000011492	ENSMODG00000029221
Eutheria	ANCESTRAL SPECIES	16				ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00940000165111	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00390000004891	ENSGT00950000182925.D.a.b.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000163246	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Glires	ANCESTRAL SPECIES	10	ENSGT00940000163246	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000166157	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000163245	ENSGT00940000166157	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Muroidea	ANCESTRAL SPECIES	50	ENSGT00940000163245	ENSGT00940000162988	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000163245	ENSGT00940000162988	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00530000063666.b	ENSGT00940000162070	ENSGT00940000163245	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00910000144208.c	ENSGT00530000063666.b	ENSGT00940000162070	ENSGT00940000163245	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00900000143655	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Golden Hamster	MODERN SPECIES	727		Apoo (ENSMAUG00000009452)	Maged1 (ENSMAUG00000011809)	Spin4 (ENSMAUG00000002658)	Arhgef9 (ENSMAUG00000000943)	ENSMAUG00000001213	Amer1 (ENSMAUG00000020197)	Asb12 (ENSMAUG00000020593)	Zc4h2 (ENSMAUG00000016038)	Zc3h12b (ENSMAUG00000017800)	Las1l (ENSMAUG00000012113)	Msn (ENSMAUG00000006616)	Vsig4 (ENSMAUG00000021950)	Hsf3 (ENSMAUG00000013538)	Heph (ENSMAUG00000008450)	Gpr165 (ENSMAUG00000004553) #22	Eda2r (ENSMAUG00000008260)	ENSMAUG00000012150	Ar (ENSMAUG00000001501)	Ophn1 (ENSMAUG00000000560)	Stard8 (ENSMAUG00000008744) ##31	Efnb1 (ENSMAUG00000019581)	ENSMAUG00000010856	Pja1 (ENSMAUG00000021969)	Nalf2 (ENSMAUG00000019622)	Eda (ENSMAUG00000011572)	ENSMAUG00000021914	Awat2 (ENSMAUG00000003789)	Otud6a (ENSMAUG00000004694)	Dgat2l6 (ENSMAUG00000007846)	Awat1 (ENSMAUG00000018520)
Chinese hamster chok1gshd	MODERN SPECIES	33	Tasl (ENSCGRG00001024295)	Gk (ENSCGRG00001012921)	Tab3 (ENSCGRG00001020007)	ENSCGRG00001016935	Fthl17a (ENSCGRG00001004869)	ENSCGRG00001021223	ENSCGRG00001018722	Zc4h2 (ENSCGRG00001023095)	Zc3h12b (ENSCGRG00001018643)	Las1l (ENSCGRG00001023388)	ENSCGRG00001000800	Msn (ENSCGRG00001024846)	Vsig4 (ENSCGRG00001003428)	Hsf3 (ENSCGRG00001022240)	Heph (ENSCGRG00001020044)	Gpr165 (ENSCGRG00001000577) #22	Pgr15l (ENSCGRG00001024706) #22	Eda2r (ENSCGRG00001002185)	ENSCGRG00001012004	ENSCGRG00001020174	Ophn1 (ENSCGRG00001024034)	Yipf6 (ENSCGRG00001024929)	Stard8 (ENSCGRG00001012866) ##31	Efnb1 (ENSCGRG00001017480)	ENSCGRG00001014800	ENSCGRG00001010332	Nalf2 (ENSCGRG00001018522)	Eda (ENSCGRG00001000080)	Awat2 (ENSCGRG00001013715)	Otud6a (ENSCGRG00001010646)	Igbp1 (ENSCGRG00001011399)
Cricetidae_B	ANCESTRAL SPECIES	54				ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000025830	Spin4 (ENSPEMG00000002526)	Arhgef9 (ENSPEMG00000012933)	Amer1 (ENSPEMG00000012693)	Asb12 (ENSPEMG00000000256)	Pfn5 (ENSPEMG00000030788)	Zc4h2 (ENSPEMG00000026603)	ENSPEMG00000031140	Zc3h12b (ENSPEMG00000030441)	Las1l (ENSPEMG00000001210)	Msn (ENSPEMG00000014831)	Vsig4 (ENSPEMG00000005797)	ENSPEMG00000028906	Hsf3 (ENSPEMG00000001674)	Heph (ENSPEMG00000000424)	Gpr165 (ENSPEMG00000027719) #22	ENSPEMG00000029584	Pgr15l (ENSPEMG00000011660) #22	Eda2r (ENSPEMG00000010048)	ENSPEMG00000024572	Ar (ENSPEMG00000000264)	ENSPEMG00000024504	Ophn1 (ENSPEMG00000000716)	Yipf6 (ENSPEMG00000006259)	Stard8 (ENSPEMG00000006401) ##31	Efnb1 (ENSPEMG00000029561)	Pja1 (ENSPEMG00000018003)	Nalf2 (ENSPEMG00000015427)	Eda (ENSPEMG00000012939)	Awat2 (ENSPEMG00000012556)	Otud6a (ENSPEMG00000008684)
Prairie vole	MODERN SPECIES	360	Prrg1 (ENSMOCG00000015594)	ENSMOCG00000019110	Cfap47 (ENSMOCG00000020168)	ENSMOCG00000018300	Mageb16 (ENSMOCG00000002574)	ENSMOCG00000019029	ENSMOCG00000013562	Tbl1x (ENSMOCG00000002063)	Prkx (ENSMOCG00000003139)	Pbsn (ENSMOCG00000005173)	ENSMOCG00000019602	Msn (ENSMOCG00000010407)	Vsig4 (ENSMOCG00000000197)	Hsf3 (ENSMOCG00000003224)	Heph (ENSMOCG00000017685)	Gpr165 (ENSMOCG00000003694) #22	Pgr15l (ENSMOCG00000004906) #22	Eda2r (ENSMOCG00000020804)	ENSMOCG00000017157	ENSMOCG00000001177	ENSMOCG00000018755	Ophn1 (ENSMOCG00000011502)	Yipf6 (ENSMOCG00000004509)	ENSMOCG00000000213	Stard8 (ENSMOCG00000000274) ##31	Efnb1 (ENSMOCG00000019155)	Pja1 (ENSMOCG00000013022)	Nalf2 (ENSMOCG00000015548)	Eda (ENSMOCG00000007633)	Awat2 (ENSMOCG00000011379)	Igbp1 (ENSMOCG00000020509)
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000162070	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Mus	ANCESTRAL SPECIES	9	ENSGT00940000162070	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000162070	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000162070	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Mus_C	ANCESTRAL SPECIES	22	ENSGT00510000048637	ENSGT00530000063666.b	ENSGT00940000162070	ENSGT00940000163245	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517.y	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
spretus	MODERN SPECIES	19	Apoo (MGP_SPRETEiJ_G0034404)	Maged1 (MGP_SPRETEiJ_G0034405)	Gspt2 (MGP_SPRETEiJ_G0034406)	Spin4 (MGP_SPRETEiJ_G0034407)	Arhgef9 (MGP_SPRETEiJ_G0034408)	Amer1 (MGP_SPRETEiJ_G0034409)	MGP_SPRETEiJ_G0034410	MGP_SPRETEiJ_G0034411	Zc4h2 (MGP_SPRETEiJ_G0034412)	Zc3h12b (MGP_SPRETEiJ_G0034413)	Las1l (MGP_SPRETEiJ_G0034414)	Msn (MGP_SPRETEiJ_G0034415)	Vsig4 (MGP_SPRETEiJ_G0034416)	MGP_SPRETEiJ_G0034417	Heph (MGP_SPRETEiJ_G0034418)	Gpr165 (MGP_SPRETEiJ_G0034419) #22	Pgr15l (MGP_SPRETEiJ_G0034420) #22	Eda2r (MGP_SPRETEiJ_G0034421)	Ar (MGP_SPRETEiJ_G0034422)	Ophn1 (MGP_SPRETEiJ_G0034423)	Yipf6 (MGP_SPRETEiJ_G0034424)	Stard8 (MGP_SPRETEiJ_G0034425) ##31	Efnb1 (MGP_SPRETEiJ_G0034426)	MGP_SPRETEiJ_G0034427	Nalf2 (MGP_SPRETEiJ_G0034428)	Eda (MGP_SPRETEiJ_G0034429)	Awat2 (MGP_SPRETEiJ_G0034430)	Otud6a (MGP_SPRETEiJ_G0034431)	Igbp1 (MGP_SPRETEiJ_G0034432)	Dgat2l6 (MGP_SPRETEiJ_G0034433)	Awat1 (MGP_SPRETEiJ_G0034434)
Steppe mouse	MODERN SPECIES	2100															ENSMSIG00000022319	Gpr165 (ENSMSIG00000022305) #22
Mouse	MODERN SPECIES	37	Maged1 (ENSMUSG00000025151)	Gspt2 (ENSMUSG00000071723)	Zxdb (ENSMUSG00000073062)	Spin4 (ENSMUSG00000071722)	Arhgef9 (ENSMUSG00000025656)	Amer1 (ENSMUSG00000050332)	Asb12 (ENSMUSG00000031204)	Pfn5 (ENSMUSG00000109858)	Zc4h2 (ENSMUSG00000035062)	Zc3h12b (ENSMUSG00000035045)	Las1l (ENSMUSG00000057421)	Msn (ENSMUSG00000031207)	Vsig4 (ENSMUSG00000044206)	Hsf3 (ENSMUSG00000045802)	Heph (ENSMUSG00000031209)	Gpr165 (ENSMUSG00000031210) #22	Pgr15l (ENSMUSG00000031212) #22	Eda2r (ENSMUSG00000034457)	Ar (ENSMUSG00000046532)	Ophn1 (ENSMUSG00000031214)	Yipf6 (ENSMUSG00000047694)	Stard8 (ENSMUSG00000031216) ##31	Efnb1 (ENSMUSG00000031217)	Pja1 (ENSMUSG00000034403)	Nalf2 (ENSMUSG00000071719)	Eda (ENSMUSG00000059327)	Awat2 (ENSMUSG00000031220)	Otud6a (ENSMUSG00000051582)	Igbp1 (ENSMUSG00000031221)	Dgat2l6 (ENSMUSG00000067597)	Awat1 (ENSMUSG00000015665)
Ryukyu mouse	MODERN SPECIES	19	Gspt2 (MGP_CAROLIEiJ_G0033239)	MGP_CAROLIEiJ_G0033240	Spin4 (MGP_CAROLIEiJ_G0033241)	MGP_CAROLIEiJ_G0033242	MGP_CAROLIEiJ_G0033243	Amer1 (MGP_CAROLIEiJ_G0033244)	Asb12 (MGP_CAROLIEiJ_G0033245)	Zc4h2 (MGP_CAROLIEiJ_G0033246)	MGP_CAROLIEiJ_G0033247	MGP_CAROLIEiJ_G0033248	Las1l (MGP_CAROLIEiJ_G0033249)	Msn (MGP_CAROLIEiJ_G0033250)	Vsig4 (MGP_CAROLIEiJ_G0033251)	Hsf3 (MGP_CAROLIEiJ_G0033252)	Heph (MGP_CAROLIEiJ_G0033253)	Gpr165 (MGP_CAROLIEiJ_G0033254) #22	MGP_CAROLIEiJ_G0033255	Pgr15l (MGP_CAROLIEiJ_G0033256) #22	Eda2r (MGP_CAROLIEiJ_G0033257)	Ar (MGP_CAROLIEiJ_G0033258)	Ophn1 (MGP_CAROLIEiJ_G0033259)	Yipf6 (MGP_CAROLIEiJ_G0033260)	Stard8 (MGP_CAROLIEiJ_G0033261) ##31	Efnb1 (MGP_CAROLIEiJ_G0033262)	Pja1 (MGP_CAROLIEiJ_G0033263)	Nalf2 (MGP_CAROLIEiJ_G0033264)	Eda (MGP_CAROLIEiJ_G0033265)	Awat2 (MGP_CAROLIEiJ_G0033266)	Otud6a (MGP_CAROLIEiJ_G0033267)	Igbp1 (MGP_CAROLIEiJ_G0033268)	Dgat2l6 (MGP_CAROLIEiJ_G0033269)
Shrew mouse	MODERN SPECIES	23	Apoo (MGP_PahariEiJ_G0031778)	Maged1 (MGP_PahariEiJ_G0031779)	Gspt2 (MGP_PahariEiJ_G0031780)	Zxdb (MGP_PahariEiJ_G0031781)	Spin4 (MGP_PahariEiJ_G0031782)	Arhgef9 (MGP_PahariEiJ_G0031783)	MGP_PahariEiJ_G0031784	Asb12 (MGP_PahariEiJ_G0031785)	Zc4h2 (MGP_PahariEiJ_G0031786)	Zc3h12b (MGP_PahariEiJ_G0031787)	Las1l (MGP_PahariEiJ_G0031788)	Msn (MGP_PahariEiJ_G0031789)	Vsig4 (MGP_PahariEiJ_G0031790)	Hsf3 (MGP_PahariEiJ_G0031791)	Heph (MGP_PahariEiJ_G0031792)	Gpr165 (MGP_PahariEiJ_G0031793) #22	Pgr15l (MGP_PahariEiJ_G0031794) #22	Eda2r (MGP_PahariEiJ_G0031795)	Ar (MGP_PahariEiJ_G0031796)	Ophn1 (MGP_PahariEiJ_G0031797)	Yipf6 (MGP_PahariEiJ_G0031798)	Stard8 (MGP_PahariEiJ_G0031799) ##31	Efnb1 (MGP_PahariEiJ_G0031800)	Pja1 (MGP_PahariEiJ_G0031801)	Nalf2 (MGP_PahariEiJ_G0031802)	Eda (MGP_PahariEiJ_G0031803)	Awat2 (MGP_PahariEiJ_G0031804)	Otud6a (MGP_PahariEiJ_G0031805)	Igbp1 (MGP_PahariEiJ_G0031806)	Dgat2l6 (MGP_PahariEiJ_G0031807)	Awat1 (MGP_PahariEiJ_G0031808)
Rat	MODERN SPECIES	46	Spin4 (ENSRNOG00000038169)	Arhgef9 (ENSRNOG00000007733)	Amer1 (ENSRNOG00000007984)	Asb12 (ENSRNOG00000004197)	LOC102551431 (ENSRNOG00000066828)	Zc4h2 (ENSRNOG00000056735)	Got2-ps6 (ENSRNOG00000057091)	AABR07038957.1 (ENSRNOG00000054638)	Zc3h12b (ENSRNOG00000011508)	Las1l (ENSRNOG00000021748)	Msn (ENSRNOG00000030118)	ENSRNOG00000070436	Vsig4 (ENSRNOG00000038132)	LOC100360790 (ENSRNOG00000021694)	Heph (ENSRNOG00000012294)	Gpr165 (ENSRNOG00000012995) #22	Pgr15l (ENSRNOG00000021547) #22	RGD1565058 (ENSRNOG00000042779)	Eda2r (ENSRNOG00000013018)	Ar (ENSRNOG00000005639)	Ophn1 (ENSRNOG00000026573)	AABR07039112.1 (ENSRNOG00000022855)	Yipf6 (ENSRNOG00000006642)	Stard8 (ENSRNOG00000033883) ##31	Efnb1 (ENSRNOG00000006877)	Rpl27-l1 (ENSRNOG00000031517)	Pja1 (ENSRNOG00000047339)	Nalf2 (ENSRNOG00000038066)	Eda (ENSRNOG00000032208)	Awat2 (ENSRNOG00000003030)	Otud6a (ENSRNOG00000042687)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1263							Asb12 (ENSNGAG00000023819)	Amer1 (ENSNGAG00000010278)	ENSNGAG00000013890	Zc4h2 (ENSNGAG00000021684)	ENSNGAG00000001158	Las1l (ENSNGAG00000015256)	Msn (ENSNGAG00000018984)	Hsf3 (ENSNGAG00000014517)	Heph (ENSNGAG00000014739)	Gpr165 (ENSNGAG00000013805) #22	Pgr15l (ENSNGAG00000017900) #22	Eda2r (ENSNGAG00000020621)	ENSNGAG00000023586	ENSNGAG00000001772	Ophn1 (ENSNGAG00000022814)	Yipf6 (ENSNGAG00000015569)	Stard8 (ENSNGAG00000021823) ##31	Efnb1 (ENSNGAG00000023292)	Pja1 (ENSNGAG00000023580)	Nalf2 (ENSNGAG00000023932)	Eda (ENSNGAG00000022131)	Awat2 (ENSNGAG00000016871)	Otud6a (ENSNGAG00000017316)	Igbp1 (ENSNGAG00000018075)	Dgat2l6 (ENSNGAG00000011894)
Kangaroo rat	MODERN SPECIES	504			Spin4 (ENSDORG00000029504)	Arhgef9 (ENSDORG00000010147)	Amer1 (ENSDORG00000027620)	Asb12 (ENSDORG00000029329)	ENSDORG00000012364	Zc4h2 (ENSDORG00000014468)	Zc3h12b (ENSDORG00000024832)	Las1l (ENSDORG00000001130)	ENSDORG00000023763	Msn (ENSDORG00000016668)	Vsig4 (ENSDORG00000001232)	ENSDORG00000027164	Heph (ENSDORG00000003982)	Gpr165 (ENSDORG00000029067) #22	Pgr15l (ENSDORG00000026395) #22	Eda2r (ENSDORG00000009069)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Sciuridae	ANCESTRAL SPECIES	35	ENSGT00940000164144	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT01050000244818	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Marmotini	ANCESTRAL SPECIES	66	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT01050000244818.n	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT00390000008496.x.a.b	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000008808.d	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Marmotini_b	ANCESTRAL SPECIES	98	ENSGT00940000164144	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT00390000008496.x.a.b	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000008808.d	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a
Arctic ground squirrel	MODERN SPECIES	512														VSIG4 (ENSUPAG00010006844)	HEPH (ENSUPAG00010006928)	ENSUPAG00010006973 #22	ENSUPAG00010006986 #22	EDA2R (ENSUPAG00010006996)
Squirrel	MODERN SPECIES	235	ENSSTOG00000020597	ARHGEF9 (ENSSTOG00000026917)	AMER1 (ENSSTOG00000014141)	ASB12 (ENSSTOG00000022386)	MTMR8 (ENSSTOG00000025360)	ENSSTOG00000022000	ZC4H2 (ENSSTOG00000020812)	ZC3H12B (ENSSTOG00000020962)	LAS1L (ENSSTOG00000028104)	ENSSTOG00000023106	ENSSTOG00000033332	MSN (ENSSTOG00000013341)	VSIG4 (ENSSTOG00000002679)	ENSSTOG00000021693	HEPH (ENSSTOG00000015310)	ENSSTOG00000028241 #22	ENSSTOG00000022372 #22	EDA2R (ENSSTOG00000008369)	AR (ENSSTOG00000021280)	OPHN1 (ENSSTOG00000013156)
Alpin marmot	MODERN SPECIES	74	ASB12 (ENSMMMG00000022346)	MTMR8 (ENSMMMG00000022325)	ENSMMMG00000022323	ENSMMMG00000022313	ENSMMMG00000022311	ZC4H2 (ENSMMMG00000022307)	ENSMMMG00000022301	ZC3H12B (ENSMMMG00000022296)	LAS1L (ENSMMMG00000022275)	ENSMMMG00000022273	ENSMMMG00000022267	ENSMMMG00000022266	VSIG4 (ENSMMMG00000022254)	ENSMMMG00000022240	HEPH (ENSMMMG00000022210)	ENSMMMG00000022208 #22	ENSMMMG00000022207 #22	EDA2R (ENSMMMG00000022202)	AR (ENSMMMG00000022192)	ENSMMMG00000022177	ENSMMMG00000022173	OPHN1 (ENSMMMG00000022152)	YIPF6 (ENSMMMG00000022145)	STARD8 (ENSMMMG00000022138) ##31	EFNB1 (ENSMMMG00000022134)	PJA1 (ENSMMMG00000022128)	ENSMMMG00000022121	EDA (ENSMMMG00000022117)	AWAT2 (ENSMMMG00000022113)	ENSMMMG00000022112	ENSMMMG00000022109
Eurasian red squirrel	MODERN SPECIES	156	MTMR8 (ENSSVLG00005020958)	ENSSVLG00005020905	ENSSVLG00005020783	ZC4H2 (ENSSVLG00005020732)	ENSSVLG00005020704	ENSSVLG00005020675	ENSSVLG00005020634	ZC3H12B (ENSSVLG00005020578)	ENSSVLG00005020314	ENSSVLG00005020269	MSN (ENSSVLG00005020199)	ENSSVLG00005020160	ENSSVLG00005020115	VSIG4 (ENSSVLG00005020025)	HEPH (ENSSVLG00005019774)	ENSSVLG00005019660 #22	ENSSVLG00005019595	ENSSVLG00005019524 #22	ENSSVLG00005019406	EDA2R (ENSSVLG00005019344)	ENSSVLG00005019287	AR (ENSSVLG00005019210)	OPHN1 (ENSSVLG00005019135)	YIPF6 (ENSSVLG00005019022)	ENSSVLG00005018990	STARD8 (ENSSVLG00005018732) ##31	EFNB1 (ENSSVLG00005018688)	PJA1 (ENSSVLG00005018646)	NALF2 (ENSSVLG00005018605)	ENSSVLG00005018578	EDA (ENSSVLG00005018551)
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00950000182925.D.a.b.a.a.b	ENSGT00940000162502	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00950000182925.D.a.b.a.a.b	ENSGT00940000162502	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b
Hystricomorpha_b	ANCESTRAL SPECIES	74	ENSGT00940000162603	ENSGT00390000004891	ENSGT00950000182925.D.a.b.a.a.b	ENSGT00940000162502	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Long-tailed chinchilla	MODERN SPECIES	182	ENSCLAG00000003312	ENSCLAG00000003441	FAAH2 (ENSCLAG00000003768)	SPIN4 (ENSCLAG00000017570)	ARHGEF9 (ENSCLAG00000004407)	ASB12 (ENSCLAG00000006178)	AMER1 (ENSCLAG00000017657)	ENSCLAG00000007927	ZC4H2 (ENSCLAG00000002934)	ZC3H12B (ENSCLAG00000003600)	LAS1L (ENSCLAG00000006717)	MSN (ENSCLAG00000008770)	VSIG4 (ENSCLAG00000003308)	HEPH (ENSCLAG00000004016)	ENSCLAG00000004929	ENSCLAG00000005489 #22	EDA2R (ENSCLAG00000008498)	AR (ENSCLAG00000009155)	OPHN1 (ENSCLAG00000007376)	YIPF6 (ENSCLAG00000003771)	STARD8 (ENSCLAG00000005156) ##31	EFNB1 (ENSCLAG00000005240)	PJA1 (ENSCLAG00000005562)	ENSCLAG00000008675	NALF2 (ENSCLAG00000009312)	EDA (ENSCLAG00000009493)	AWAT2 (ENSCLAG00000009802)	ENSCLAG00000009912	ENSCLAG00000009962	DGAT2L6 (ENSCLAG00000010060)	AWAT1 (ENSCLAG00000010172)
Degu	MODERN SPECIES	252	SPIN4 (ENSODEG00000018809)	ARHGEF9 (ENSODEG00000002707)	ENSODEG00000002920	ENSODEG00000002930	ASB12 (ENSODEG00000002937)	ENSODEG00000018865	ZC4H2 (ENSODEG00000002954)	ENSODEG00000002966	ENSODEG00000018885	ENSODEG00000002977	LAS1L (ENSODEG00000003001)	ENSODEG00000003056	MSN (ENSODEG00000003097)	HEPH (ENSODEG00000003182)	ENSODEG00000002647	ENSODEG00000002660 #22
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000042114	ENSHGLG00000046360	ENSHGLG00000037523	ENSHGLG00000020196	ENSHGLG00000003107	ENSHGLG00000044476	ENSHGLG00000002770	ENSHGLG00000049705	MSN (ENSHGLG00000001737)	VSIG4 (ENSHGLG00000011027)	ENSHGLG00000044766	ENSHGLG00000019568	ENSHGLG00000007957	HEPH (ENSHGLG00000001643)	ENSHGLG00000036194	ENSHGLG00000003998 #22	ENSHGLG00000044361	ENSHGLG00000009972	ENSHGLG00000000186	ENSHGLG00000032600	ENSHGLG00000040031	ENSHGLG00000032367	ENSHGLG00000037280	ENSHGLG00000036627	ENSHGLG00000013918	ENSHGLG00000050877	ENSHGLG00000000120	ENSHGLG00000050762	YIPF6 (ENSHGLG00000050669)	STARD8 (ENSHGLG00000000450) ##31	EFNB1 (ENSHGLG00000000418)
Lagomorpha	ANCESTRAL SPECIES	40	ENSGT00940000164144	ENSGT00970000194118	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Rabbit	MODERN SPECIES	1401	ENSOCUG00000030864	AMER1 (ENSOCUG00000001613)	ASB12 (ENSOCUG00000023698)	MTMR8 (ENSOCUG00000001617)	ENSOCUG00000023259	ENSOCUG00000029232	ZC4H2 (ENSOCUG00000013393)	ZC3H12B (ENSOCUG00000006130)	LAS1L (ENSOCUG00000006760)	ENSOCUG00000024108	ENSOCUG00000000149	ENSOCUG00000021042	VSIG4 (ENSOCUG00000004172)	ENSOCUG00000022713	HEPH (ENSOCUG00000014866)	ENSOCUG00000023386 #22	ENSOCUG00000022819 #22	EDA2R (ENSOCUG00000022282)	ENSOCUG00000039136	AR (ENSOCUG00000003142)	ENSOCUG00000032785	OPHN1 (ENSOCUG00000007381)	ENSOCUG00000001901	YIPF6 (ENSOCUG00000014510)	STARD8 (ENSOCUG00000010783) ##31	EFNB1 (ENSOCUG00000013726)	PJA1 (ENSOCUG00000007244)	ENSOCUG00000029887	NALF2 (ENSOCUG00000008430)	ENSOCUG00000015586	EDA (ENSOCUG00000015594)
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000154336.c.a #22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000154336.c.a #22
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00940000163673	ENSGT00390000004891	ENSGT00950000182925.D.a.b.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00940000163673	ENSGT00390000004891	ENSGT00950000182925.D.a.a.b.b	ENSGT00940000165111	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b
Chiroptera	ANCESTRAL SPECIES	25			ENSGT00940000165111	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000164144	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00950000182925.D.a.b.a.a.a.b	ENSGT00950000182925.D.a.a.b.b	ENSGT00390000004891	ENSGT00940000163673	ENSGT00940000162603.d	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000163664	ENSGT00840000130063	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c	ENSGT00940000162763	ENSGT00940000161795	ENSGT00940000162980
Microchiroptera	ANCESTRAL SPECIES	25			ENSGT00940000165111	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000164144	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00950000182925.D.a.b.a.a.a.b	ENSGT00950000182925.D.a.a.b.b	ENSGT00390000004891	ENSGT00940000163673	ENSGT00940000162603.d	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000163664	ENSGT00840000130063	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c	ENSGT00940000162763	ENSGT00940000161795	ENSGT00940000162980
Greater horseshoe bat	MODERN SPECIES		SPIN4 (ENSRFEG00010000198)	ENSRFEG00010000214	ARHGEF9 (ENSRFEG00010000258)	ENSRFEG00010000325	AMER1 (ENSRFEG00010000332)	MTMR8 (ENSRFEG00010000342)	ENSRFEG00010000366	ENSRFEG00010000382	ZC4H2 (ENSRFEG00010000420)	ZC3H12B (ENSRFEG00010000441)	ENSRFEG00010000464	LAS1L (ENSRFEG00010000497)	MSN (ENSRFEG00010000519)	VSIG4 (ENSRFEG00010000543)	HEPH (ENSRFEG00010000678)	ENSRFEG00010000999 #22	ENSRFEG00010001013	ENSRFEG00010001022	NBDY (ENSRFEG00010001038)	ENSRFEG00010001051	UBQLN2 (ENSRFEG00010001060)	KLF8 (ENSRFEG00010001110)	RRAGB (ENSRFEG00010001176)	ENSRFEG00010001225	MAGEH1 (ENSRFEG00010001238)	USP51 (ENSRFEG00010001250)	ALAS2 (ENSRFEG00010001268)	APEX2 (ENSRFEG00010001302)	PFKFB1 (ENSRFEG00010001373)	MAGED2 (ENSRFEG00010001490)	ITIH6 (ENSRFEG00010001541)
Microbat	MODERN SPECIES	941	ENSMLUG00000027999	ARHGEF9 (ENSMLUG00000002051)	ENSMLUG00000027571	ENSMLUG00000027384	AMER1 (ENSMLUG00000004413)	ENSMLUG00000004418	ZC4H2 (ENSMLUG00000008305)	ENSMLUG00000027582	ZC3H12B (ENSMLUG00000013635)	LAS1L (ENSMLUG00000013640)	ENSMLUG00000030463	ENSMLUG00000005009	MSN (ENSMLUG00000008116)	VSIG4 (ENSMLUG00000003881)	HEPH (ENSMLUG00000000638)	ENSMLUG00000030523 #22	ZCCHC13 (ENSMLUG00000002814)	CHIC1 (ENSMLUG00000025620)	ENSMLUG00000027332	NAP1L2 (ENSMLUG00000001703)	PHKA1 (ENSMLUG00000005413)	ENSMLUG00000005406	CITED1 (ENSMLUG00000005401)	ENSMLUG00000006172	RPS4X (ENSMLUG00000011685)	ERCC6L (ENSMLUG00000011670)	PIN4 (ENSMLUG00000012073)	NHSL2 (ENSMLUG00000012253)	RTL5 (ENSMLUG00000012246)	ENSMLUG00000027587	CXCR3 (ENSMLUG00000008266)
Theria	ANCESTRAL SPECIES	33	ENSGT00950000182962.a.b	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000162865	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000163684
Eutheria	ANCESTRAL SPECIES	16			ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00950000182925.D.a.b.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Glires	ANCESTRAL SPECIES	10	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Rodentia	ANCESTRAL SPECIES	10	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000166157	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Muroidea	ANCESTRAL SPECIES	50	ENSGT00940000162988	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000162988	ENSGT00940000166157	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000162070	ENSGT00940000163245	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00530000063666.b	ENSGT00940000162070	ENSGT00940000163245	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00900000143655	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Chinese hamster chok1gshd	MODERN SPECIES	33	Gk (ENSCGRG00001012921)	Tab3 (ENSCGRG00001020007)	ENSCGRG00001016935	Fthl17a (ENSCGRG00001004869)	ENSCGRG00001021223	ENSCGRG00001018722	Zc4h2 (ENSCGRG00001023095)	Zc3h12b (ENSCGRG00001018643)	Las1l (ENSCGRG00001023388)	ENSCGRG00001000800	Msn (ENSCGRG00001024846)	Vsig4 (ENSCGRG00001003428)	Hsf3 (ENSCGRG00001022240)	Heph (ENSCGRG00001020044)	Gpr165 (ENSCGRG00001000577) #22	Pgr15l (ENSCGRG00001024706) #22	Eda2r (ENSCGRG00001002185)	ENSCGRG00001012004	ENSCGRG00001020174	Ophn1 (ENSCGRG00001024034)	Yipf6 (ENSCGRG00001024929)	Stard8 (ENSCGRG00001012866) ##31	Efnb1 (ENSCGRG00001017480)	ENSCGRG00001014800	ENSCGRG00001010332	Nalf2 (ENSCGRG00001018522)	Eda (ENSCGRG00001000080)	Awat2 (ENSCGRG00001013715)	Otud6a (ENSCGRG00001010646)	Igbp1 (ENSCGRG00001011399)	Dgat2l6 (ENSCGRG00001015043)
Golden Hamster	MODERN SPECIES	225																Pgr15l (ENSMAUG00000013181) #22
Cricetidae_B	ANCESTRAL SPECIES	54			ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Northern American deer mouse	MODERN SPECIES	475	Arhgef9 (ENSPEMG00000012933)	Amer1 (ENSPEMG00000012693)	Asb12 (ENSPEMG00000000256)	Pfn5 (ENSPEMG00000030788)	Zc4h2 (ENSPEMG00000026603)	ENSPEMG00000031140	Zc3h12b (ENSPEMG00000030441)	Las1l (ENSPEMG00000001210)	Msn (ENSPEMG00000014831)	Vsig4 (ENSPEMG00000005797)	ENSPEMG00000028906	Hsf3 (ENSPEMG00000001674)	Heph (ENSPEMG00000000424)	Gpr165 (ENSPEMG00000027719) #22	ENSPEMG00000029584	Pgr15l (ENSPEMG00000011660) #22	Eda2r (ENSPEMG00000010048)	ENSPEMG00000024572	Ar (ENSPEMG00000000264)	ENSPEMG00000024504	Ophn1 (ENSPEMG00000000716)	Yipf6 (ENSPEMG00000006259)	Stard8 (ENSPEMG00000006401) ##31	Efnb1 (ENSPEMG00000029561)	Pja1 (ENSPEMG00000018003)	Nalf2 (ENSPEMG00000015427)	Eda (ENSPEMG00000012939)	Awat2 (ENSPEMG00000012556)	Otud6a (ENSPEMG00000008684)	Igbp1 (ENSPEMG00000007101)	Dgat2l6 (ENSPEMG00000015549)
Prairie vole	MODERN SPECIES	360	ENSMOCG00000019110	Cfap47 (ENSMOCG00000020168)	ENSMOCG00000018300	Mageb16 (ENSMOCG00000002574)	ENSMOCG00000019029	ENSMOCG00000013562	Tbl1x (ENSMOCG00000002063)	Prkx (ENSMOCG00000003139)	Pbsn (ENSMOCG00000005173)	ENSMOCG00000019602	Msn (ENSMOCG00000010407)	Vsig4 (ENSMOCG00000000197)	Hsf3 (ENSMOCG00000003224)	Heph (ENSMOCG00000017685)	Gpr165 (ENSMOCG00000003694) #22	Pgr15l (ENSMOCG00000004906) #22	Eda2r (ENSMOCG00000020804)	ENSMOCG00000017157	ENSMOCG00000001177	ENSMOCG00000018755	Ophn1 (ENSMOCG00000011502)	Yipf6 (ENSMOCG00000004509)	ENSMOCG00000000213	Stard8 (ENSMOCG00000000274) ##31	Efnb1 (ENSMOCG00000019155)	Pja1 (ENSMOCG00000013022)	Nalf2 (ENSMOCG00000015548)	Eda (ENSMOCG00000007633)	Awat2 (ENSMOCG00000011379)	Igbp1 (ENSMOCG00000020509)	Dgat2l6 (ENSMOCG00000012031)
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Mus	ANCESTRAL SPECIES	9	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000163245	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Mus_C	ANCESTRAL SPECIES	22	ENSGT00530000063666.b	ENSGT00940000162070	ENSGT00940000163245	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517.y	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b
spretus	MODERN SPECIES	19	Maged1 (MGP_SPRETEiJ_G0034405)	Gspt2 (MGP_SPRETEiJ_G0034406)	Spin4 (MGP_SPRETEiJ_G0034407)	Arhgef9 (MGP_SPRETEiJ_G0034408)	Amer1 (MGP_SPRETEiJ_G0034409)	MGP_SPRETEiJ_G0034410	MGP_SPRETEiJ_G0034411	Zc4h2 (MGP_SPRETEiJ_G0034412)	Zc3h12b (MGP_SPRETEiJ_G0034413)	Las1l (MGP_SPRETEiJ_G0034414)	Msn (MGP_SPRETEiJ_G0034415)	Vsig4 (MGP_SPRETEiJ_G0034416)	MGP_SPRETEiJ_G0034417	Heph (MGP_SPRETEiJ_G0034418)	Gpr165 (MGP_SPRETEiJ_G0034419) #22	Pgr15l (MGP_SPRETEiJ_G0034420) #22	Eda2r (MGP_SPRETEiJ_G0034421)	Ar (MGP_SPRETEiJ_G0034422)	Ophn1 (MGP_SPRETEiJ_G0034423)	Yipf6 (MGP_SPRETEiJ_G0034424)	Stard8 (MGP_SPRETEiJ_G0034425) ##31	Efnb1 (MGP_SPRETEiJ_G0034426)	MGP_SPRETEiJ_G0034427	Nalf2 (MGP_SPRETEiJ_G0034428)	Eda (MGP_SPRETEiJ_G0034429)	Awat2 (MGP_SPRETEiJ_G0034430)	Otud6a (MGP_SPRETEiJ_G0034431)	Igbp1 (MGP_SPRETEiJ_G0034432)	Dgat2l6 (MGP_SPRETEiJ_G0034433)	Awat1 (MGP_SPRETEiJ_G0034434)	P2ry4 (MGP_SPRETEiJ_G0034435)
Steppe mouse	MODERN SPECIES	2113																Pgr15l (ENSMSIG00000001074) #22
Mouse	MODERN SPECIES	37	Gspt2 (ENSMUSG00000071723)	Zxdb (ENSMUSG00000073062)	Spin4 (ENSMUSG00000071722)	Arhgef9 (ENSMUSG00000025656)	Amer1 (ENSMUSG00000050332)	Asb12 (ENSMUSG00000031204)	Pfn5 (ENSMUSG00000109858)	Zc4h2 (ENSMUSG00000035062)	Zc3h12b (ENSMUSG00000035045)	Las1l (ENSMUSG00000057421)	Msn (ENSMUSG00000031207)	Vsig4 (ENSMUSG00000044206)	Hsf3 (ENSMUSG00000045802)	Heph (ENSMUSG00000031209)	Gpr165 (ENSMUSG00000031210) #22	Pgr15l (ENSMUSG00000031212) #22	Eda2r (ENSMUSG00000034457)	Ar (ENSMUSG00000046532)	Ophn1 (ENSMUSG00000031214)	Yipf6 (ENSMUSG00000047694)	Stard8 (ENSMUSG00000031216) ##31	Efnb1 (ENSMUSG00000031217)	Pja1 (ENSMUSG00000034403)	Nalf2 (ENSMUSG00000071719)	Eda (ENSMUSG00000059327)	Awat2 (ENSMUSG00000031220)	Otud6a (ENSMUSG00000051582)	Igbp1 (ENSMUSG00000031221)	Dgat2l6 (ENSMUSG00000067597)	Awat1 (ENSMUSG00000015665)	P2ry4 (ENSMUSG00000044359)
Ryukyu mouse	MODERN SPECIES	19	Spin4 (MGP_CAROLIEiJ_G0033241)	MGP_CAROLIEiJ_G0033242	MGP_CAROLIEiJ_G0033243	Amer1 (MGP_CAROLIEiJ_G0033244)	Asb12 (MGP_CAROLIEiJ_G0033245)	Zc4h2 (MGP_CAROLIEiJ_G0033246)	MGP_CAROLIEiJ_G0033247	MGP_CAROLIEiJ_G0033248	Las1l (MGP_CAROLIEiJ_G0033249)	Msn (MGP_CAROLIEiJ_G0033250)	Vsig4 (MGP_CAROLIEiJ_G0033251)	Hsf3 (MGP_CAROLIEiJ_G0033252)	Heph (MGP_CAROLIEiJ_G0033253)	Gpr165 (MGP_CAROLIEiJ_G0033254) #22	MGP_CAROLIEiJ_G0033255	Pgr15l (MGP_CAROLIEiJ_G0033256) #22	Eda2r (MGP_CAROLIEiJ_G0033257)	Ar (MGP_CAROLIEiJ_G0033258)	Ophn1 (MGP_CAROLIEiJ_G0033259)	Yipf6 (MGP_CAROLIEiJ_G0033260)	Stard8 (MGP_CAROLIEiJ_G0033261) ##31	Efnb1 (MGP_CAROLIEiJ_G0033262)	Pja1 (MGP_CAROLIEiJ_G0033263)	Nalf2 (MGP_CAROLIEiJ_G0033264)	Eda (MGP_CAROLIEiJ_G0033265)	Awat2 (MGP_CAROLIEiJ_G0033266)	Otud6a (MGP_CAROLIEiJ_G0033267)	Igbp1 (MGP_CAROLIEiJ_G0033268)	Dgat2l6 (MGP_CAROLIEiJ_G0033269)	Awat1 (MGP_CAROLIEiJ_G0033270)	P2ry4 (MGP_CAROLIEiJ_G0033271)
Shrew mouse	MODERN SPECIES	23	Maged1 (MGP_PahariEiJ_G0031779)	Gspt2 (MGP_PahariEiJ_G0031780)	Zxdb (MGP_PahariEiJ_G0031781)	Spin4 (MGP_PahariEiJ_G0031782)	Arhgef9 (MGP_PahariEiJ_G0031783)	MGP_PahariEiJ_G0031784	Asb12 (MGP_PahariEiJ_G0031785)	Zc4h2 (MGP_PahariEiJ_G0031786)	Zc3h12b (MGP_PahariEiJ_G0031787)	Las1l (MGP_PahariEiJ_G0031788)	Msn (MGP_PahariEiJ_G0031789)	Vsig4 (MGP_PahariEiJ_G0031790)	Hsf3 (MGP_PahariEiJ_G0031791)	Heph (MGP_PahariEiJ_G0031792)	Gpr165 (MGP_PahariEiJ_G0031793) #22	Pgr15l (MGP_PahariEiJ_G0031794) #22	Eda2r (MGP_PahariEiJ_G0031795)	Ar (MGP_PahariEiJ_G0031796)	Ophn1 (MGP_PahariEiJ_G0031797)	Yipf6 (MGP_PahariEiJ_G0031798)	Stard8 (MGP_PahariEiJ_G0031799) ##31	Efnb1 (MGP_PahariEiJ_G0031800)	Pja1 (MGP_PahariEiJ_G0031801)	Nalf2 (MGP_PahariEiJ_G0031802)	Eda (MGP_PahariEiJ_G0031803)	Awat2 (MGP_PahariEiJ_G0031804)	Otud6a (MGP_PahariEiJ_G0031805)	Igbp1 (MGP_PahariEiJ_G0031806)	Dgat2l6 (MGP_PahariEiJ_G0031807)	Awat1 (MGP_PahariEiJ_G0031808)	P2ry4 (MGP_PahariEiJ_G0031809)
Rat	MODERN SPECIES	46	Arhgef9 (ENSRNOG00000007733)	Amer1 (ENSRNOG00000007984)	Asb12 (ENSRNOG00000004197)	LOC102551431 (ENSRNOG00000066828)	Zc4h2 (ENSRNOG00000056735)	Got2-ps6 (ENSRNOG00000057091)	AABR07038957.1 (ENSRNOG00000054638)	Zc3h12b (ENSRNOG00000011508)	Las1l (ENSRNOG00000021748)	Msn (ENSRNOG00000030118)	ENSRNOG00000070436	Vsig4 (ENSRNOG00000038132)	LOC100360790 (ENSRNOG00000021694)	Heph (ENSRNOG00000012294)	Gpr165 (ENSRNOG00000012995) #22	Pgr15l (ENSRNOG00000021547) #22	RGD1565058 (ENSRNOG00000042779)	Eda2r (ENSRNOG00000013018)	Ar (ENSRNOG00000005639)	Ophn1 (ENSRNOG00000026573)	AABR07039112.1 (ENSRNOG00000022855)	Yipf6 (ENSRNOG00000006642)	Stard8 (ENSRNOG00000033883) ##31	Efnb1 (ENSRNOG00000006877)	Rpl27-l1 (ENSRNOG00000031517)	Pja1 (ENSRNOG00000047339)	Nalf2 (ENSRNOG00000038066)	Eda (ENSRNOG00000032208)	Awat2 (ENSRNOG00000003030)	Otud6a (ENSRNOG00000042687)	Igbp1 (ENSRNOG00000026267)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1263						Asb12 (ENSNGAG00000023819)	Amer1 (ENSNGAG00000010278)	ENSNGAG00000013890	Zc4h2 (ENSNGAG00000021684)	ENSNGAG00000001158	Las1l (ENSNGAG00000015256)	Msn (ENSNGAG00000018984)	Hsf3 (ENSNGAG00000014517)	Heph (ENSNGAG00000014739)	Gpr165 (ENSNGAG00000013805) #22	Pgr15l (ENSNGAG00000017900) #22	Eda2r (ENSNGAG00000020621)	ENSNGAG00000023586	ENSNGAG00000001772	Ophn1 (ENSNGAG00000022814)	Yipf6 (ENSNGAG00000015569)	Stard8 (ENSNGAG00000021823) ##31	Efnb1 (ENSNGAG00000023292)	Pja1 (ENSNGAG00000023580)	Nalf2 (ENSNGAG00000023932)	Eda (ENSNGAG00000022131)	Awat2 (ENSNGAG00000016871)	Otud6a (ENSNGAG00000017316)	Igbp1 (ENSNGAG00000018075)	Dgat2l6 (ENSNGAG00000011894)	Awat1 (ENSNGAG00000013581)
Kangaroo rat	MODERN SPECIES	504		Spin4 (ENSDORG00000029504)	Arhgef9 (ENSDORG00000010147)	Amer1 (ENSDORG00000027620)	Asb12 (ENSDORG00000029329)	ENSDORG00000012364	Zc4h2 (ENSDORG00000014468)	Zc3h12b (ENSDORG00000024832)	Las1l (ENSDORG00000001130)	ENSDORG00000023763	Msn (ENSDORG00000016668)	Vsig4 (ENSDORG00000001232)	ENSDORG00000027164	Heph (ENSDORG00000003982)	Gpr165 (ENSDORG00000029067) #22	Pgr15l (ENSDORG00000026395) #22	Eda2r (ENSDORG00000009069)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Sciuridae	ANCESTRAL SPECIES	35	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT01050000244818	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00940000166108	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Marmotini	ANCESTRAL SPECIES	66	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT01050000244818.n	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT00390000008496.x.a.b	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000008808.d	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Marmotini_b	ANCESTRAL SPECIES	98	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT00390000008496.x.a.b	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000008808.d	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b
Arctic ground squirrel	MODERN SPECIES	512													VSIG4 (ENSUPAG00010006844)	HEPH (ENSUPAG00010006928)	ENSUPAG00010006973 #22	ENSUPAG00010006986 #22	EDA2R (ENSUPAG00010006996)
Squirrel	MODERN SPECIES	235	ARHGEF9 (ENSSTOG00000026917)	AMER1 (ENSSTOG00000014141)	ASB12 (ENSSTOG00000022386)	MTMR8 (ENSSTOG00000025360)	ENSSTOG00000022000	ZC4H2 (ENSSTOG00000020812)	ZC3H12B (ENSSTOG00000020962)	LAS1L (ENSSTOG00000028104)	ENSSTOG00000023106	ENSSTOG00000033332	MSN (ENSSTOG00000013341)	VSIG4 (ENSSTOG00000002679)	ENSSTOG00000021693	HEPH (ENSSTOG00000015310)	ENSSTOG00000028241 #22	ENSSTOG00000022372 #22	EDA2R (ENSSTOG00000008369)	AR (ENSSTOG00000021280)	OPHN1 (ENSSTOG00000013156)
Alpin marmot	MODERN SPECIES	74	MTMR8 (ENSMMMG00000022325)	ENSMMMG00000022323	ENSMMMG00000022313	ENSMMMG00000022311	ZC4H2 (ENSMMMG00000022307)	ENSMMMG00000022301	ZC3H12B (ENSMMMG00000022296)	LAS1L (ENSMMMG00000022275)	ENSMMMG00000022273	ENSMMMG00000022267	ENSMMMG00000022266	VSIG4 (ENSMMMG00000022254)	ENSMMMG00000022240	HEPH (ENSMMMG00000022210)	ENSMMMG00000022208 #22	ENSMMMG00000022207 #22	EDA2R (ENSMMMG00000022202)	AR (ENSMMMG00000022192)	ENSMMMG00000022177	ENSMMMG00000022173	OPHN1 (ENSMMMG00000022152)	YIPF6 (ENSMMMG00000022145)	STARD8 (ENSMMMG00000022138) ##31	EFNB1 (ENSMMMG00000022134)	PJA1 (ENSMMMG00000022128)	ENSMMMG00000022121	EDA (ENSMMMG00000022117)	AWAT2 (ENSMMMG00000022113)	ENSMMMG00000022112	ENSMMMG00000022109	ENSMMMG00000022106
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005020783	ZC4H2 (ENSSVLG00005020732)	ENSSVLG00005020704	ENSSVLG00005020675	ENSSVLG00005020634	ZC3H12B (ENSSVLG00005020578)	ENSSVLG00005020314	ENSSVLG00005020269	MSN (ENSSVLG00005020199)	ENSSVLG00005020160	ENSSVLG00005020115	VSIG4 (ENSSVLG00005020025)	HEPH (ENSSVLG00005019774)	ENSSVLG00005019660 #22	ENSSVLG00005019595	ENSSVLG00005019524 #22	ENSSVLG00005019406	EDA2R (ENSSVLG00005019344)	ENSSVLG00005019287	AR (ENSSVLG00005019210)	OPHN1 (ENSSVLG00005019135)	YIPF6 (ENSSVLG00005019022)	ENSSVLG00005018990	STARD8 (ENSSVLG00005018732) ##31	EFNB1 (ENSSVLG00005018688)	PJA1 (ENSSVLG00005018646)	NALF2 (ENSSVLG00005018605)	ENSSVLG00005018578	EDA (ENSSVLG00005018551)	AWAT2 (ENSSVLG00005018479)	OTUD6A (ENSSVLG00005018462)
Lagomorpha	ANCESTRAL SPECIES	40	ENSGT00970000194118	ENSGT00940000154103.b	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT00940000166548	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336.c.a #22	ENSGT00940000154336.c.b #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a
Rabbit	MODERN SPECIES	1401	AMER1 (ENSOCUG00000001613)	ASB12 (ENSOCUG00000023698)	MTMR8 (ENSOCUG00000001617)	ENSOCUG00000023259	ENSOCUG00000029232	ZC4H2 (ENSOCUG00000013393)	ZC3H12B (ENSOCUG00000006130)	LAS1L (ENSOCUG00000006760)	ENSOCUG00000024108	ENSOCUG00000000149	ENSOCUG00000021042	VSIG4 (ENSOCUG00000004172)	ENSOCUG00000022713	HEPH (ENSOCUG00000014866)	ENSOCUG00000023386 #22	ENSOCUG00000022819 #22	EDA2R (ENSOCUG00000022282)	ENSOCUG00000039136	AR (ENSOCUG00000003142)	ENSOCUG00000032785	OPHN1 (ENSOCUG00000007381)	ENSOCUG00000001901	YIPF6 (ENSOCUG00000014510)	STARD8 (ENSOCUG00000010783) ##31	EFNB1 (ENSOCUG00000013726)	PJA1 (ENSOCUG00000007244)	ENSOCUG00000029887	NALF2 (ENSOCUG00000008430)	ENSOCUG00000015586	EDA (ENSOCUG00000015594)	AWAT2 (ENSOCUG00000029339)
Mammalia	ANCESTRAL SPECIES	73	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00940000153972.A	ENSGT00940000157994
Theria	ANCESTRAL SPECIES	15	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000161513	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Opossum	MODERN SPECIES	3	CCDC82 (ENSMODG00000000097)	MAML2 (ENSMODG00000036741)	MTMR2 (ENSMODG00000000116)	CEP57 (ENSMODG00000000131)	FAM76B (ENSMODG00000000139)	SESN3 (ENSMODG00000000163)	ENDOD1 (ENSMODG00000000165)	ENSMODG00000000169	AMOTL1 (ENSMODG00000000180)	PIWIL4 (ENSMODG00000000217)	FUT4 (ENSMODG00000024373)	ENSMODG00000028613	ENSMODG00000043171	ANKRD49 (ENSMODG00000000222) #21	MRE11 (ENSMODG00000000231)	GPR83 (ENSMODG00000000236) #22	IZUMO1R (ENSMODG00000000260)	ENSMODG00000041397	PANX1 (ENSMODG00000000278)	HEPHL1 (ENSMODG00000000357)	VSTM5 (ENSMODG00000045386)	MED17 (ENSMODG00000000383)	ENSMODG00000000412	ENSMODG00000008546	ENSMODG00000047013	ENSMODG00000042713	ENSMODG00000000714	ENSMODG00000030044	ENSMODG00000000726	DEUP1 (ENSMODG00000000922)	ENSMODG00000024309
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00940000161737.n.b.a	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981.j	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00940000161737.n.b.a	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981.j	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00940000161737.n.b.a	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981.j	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
koala	MODERN SPECIES	86	JRKL (ENSPCIG00000001127)	CCDC82 (ENSPCIG00000001133)	ENSPCIG00000001152	MTMR2 (ENSPCIG00000001170)	CEP57 (ENSPCIG00000035948)	FAM76B (ENSPCIG00000001260)	SESN3 (ENSPCIG00000001309)	ENDOD1 (ENSPCIG00000001331)	CWC15 (ENSPCIG00000001348)	AMOTL1 (ENSPCIG00000001368)	PIWIL4 (ENSPCIG00000030600)	ENSPCIG00000030597	C11orf97 (ENSPCIG00000034457)	ANKRD49 (ENSPCIG00000009610) #21	MRE11 (ENSPCIG00000009614)	GPR83 (ENSPCIG00000036706) #22	IZUMO1R (ENSPCIG00000003349)	ENSPCIG00000003364	PANX1 (ENSPCIG00000003374)	HEPHL1 (ENSPCIG00000012215)	VSTM5 (ENSPCIG00000003391)	MED17 (ENSPCIG00000003395)	C11orf54 (ENSPCIG00000003405)	ENSPCIG00000003418	ENSPCIG00000003565	DEUP1 (ENSPCIG00000003590)	SLC36A4 (ENSPCIG00000003665)	ENSPCIG00000005509	MTNR1B (ENSPCIG00000003688)	ENSPCIG00000031045	ENSPCIG00000034515
Common wonbat	MODERN SPECIES	459	CCDC82 (ENSVURG00010010939)	MAML2 (ENSVURG00010010918)	ENSVURG00010010854	CEP57 (ENSVURG00010010807)	FAM76B (ENSVURG00010010774)	ENSVURG00010010758	SESN3 (ENSVURG00010010715)	ENDOD1 (ENSVURG00010010700)	CWC15 (ENSVURG00010010692)	AMOTL1 (ENSVURG00010010648)	PIWIL4 (ENSVURG00010010619)	ENSVURG00010010592	C11orf97 (ENSVURG00010010576)	ANKRD49 (ENSVURG00010010565) #21	MRE11 (ENSVURG00010010496)	GPR83 (ENSVURG00010010363) #22	IZUMO1R (ENSVURG00010010349)	PANX1 (ENSVURG00010010344)	HEPHL1 (ENSVURG00010010303)	VSTM5 (ENSVURG00010010292)	MED17 (ENSVURG00010010274)	C11orf54 (ENSVURG00010010260)	ENSVURG00010010253	ENSVURG00010010145	ENSVURG00010010135	DEUP1 (ENSVURG00010010055)	SLC36A4 (ENSVURG00010010032)	ENSVURG00010010023	ENSVURG00010010020	ENSVURG00010010016	FAT3 (ENSVURG00010009960)
Wallaby	MODERN SPECIES	11069																GPR83 (ENSMEUG00000015639) #22
Tasmanian devil	MODERN SPECIES	2	CCDC82 (ENSSHAG00000020626)	MAML2 (ENSSHAG00000024964)	MTMR2 (ENSSHAG00000012900)	CEP57 (ENSSHAG00000013049)	FAM76B (ENSSHAG00000030305)	ENSSHAG00000014772	SESN3 (ENSSHAG00000016018)	ENDOD1 (ENSSHAG00000016362)	ENSSHAG00000016534	AMOTL1 (ENSSHAG00000016815)	PIWIL4 (ENSSHAG00000017415)	FUT4 (ENSSHAG00000032130)	ENSSHAG00000028715	ENSSHAG00000021016 #21	MRE11 (ENSSHAG00000017729)	GPR83 (ENSSHAG00000024803) #22	IZUMO1R (ENSSHAG00000029294)	PANX1 (ENSSHAG00000018175)	HEPHL1 (ENSSHAG00000018243)	VSTM5 (ENSSHAG00000021368)	MED17 (ENSSHAG00000004223)	C11orf54 (ENSSHAG00000005435)	ENSSHAG00000005874	ENSSHAG00000006706	SMCO4 (ENSSHAG00000024792)	DEUP1 (ENSSHAG00000007373)	SLC36A4 (ENSSHAG00000010022)	ENSSHAG00000010485	ENSSHAG00000023084	MTNR1B (ENSSHAG00000011264)	FAT3 (ENSSHAG00000012153)
Eutheria	ANCESTRAL SPECIES	3	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Carnivora	ANCESTRAL SPECIES	21	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Caniformia	ANCESTRAL SPECIES	17	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823.b	ENSGT00910000147289	ENSGT00520000058823.a	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823.a	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Ursidae	ANCESTRAL SPECIES	15	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.u	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823.a	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b.m	ENSGT01030000234598.b.a.b.k.a
Ursus	ANCESTRAL SPECIES	157	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.u.b	ENSGT00940000162152.u.a.a	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b.m
American black bear	MODERN SPECIES	3984														ANKRD49 (ENSUAMG00000017082) #21	MRE11 (ENSUAMG00000017076)	GPR83 (ENSUAMG00000017065) #22
Polar bear	MODERN SPECIES	149	CCDC82 (ENSUMAG00000008097)	ENSUMAG00000008084	ENSUMAG00000008078	MTMR2 (ENSUMAG00000007301)	CEP57 (ENSUMAG00000007244)	FAM76B (ENSUMAG00000007226)	SESN3 (ENSUMAG00000007186)	ENDOD1 (ENSUMAG00000007178)	ENSUMAG00000007175	ENSUMAG00000007170	CWC15 (ENSUMAG00000007161)	AMOTL1 (ENSUMAG00000007154)	PIWIL4 (ENSUMAG00000007117)	ANKRD49 (ENSUMAG00000007092) #21	MRE11 (ENSUMAG00000007075)	GPR83 (ENSUMAG00000007059) #22	IZUMO1R (ENSUMAG00000006944)	PANX1 (ENSUMAG00000006930)	HEPHL1 (ENSUMAG00000006908)	VSTM5 (ENSUMAG00000006903)	MED17 (ENSUMAG00000006899)	C11orf54 (ENSUMAG00000006893)	TAF1D (ENSUMAG00000006891)	CEP295 (ENSUMAG00000006832)	SMCO4 (ENSUMAG00000006807)	DEUP1 (ENSUMAG00000006791)	SLC36A4 (ENSUMAG00000006788)	FAT3 (ENSUMAG00000006731)	CHORDC1 (ENSUMAG00000006613)	NAALAD2 (ENSUMAG00000006599)	B3GAT1 (ENSUMAG00000006581)
Giant Panda	MODERN SPECIES	18	MTMR2 (ENSAMEG00000007994)	CEP57 (ENSAMEG00000008024)	FAM76B (ENSAMEG00000008044)	SESN3 (ENSAMEG00000011413)	ENDOD1 (ENSAMEG00000019907)	ENSAMEG00000027198	ENSAMEG00000025796	CWC15 (ENSAMEG00000011392)	AMOTL1 (ENSAMEG00000011381)	ENSAMEG00000001911	PIWIL4 (ENSAMEG00000007580)	FUT4 (ENSAMEG00000007616)	C11orf97 (ENSAMEG00000024321)	ANKRD49 (ENSAMEG00000028517) #21	MRE11 (ENSAMEG00000007626)	GPR83 (ENSAMEG00000007680) #22	IZUMO1R (ENSAMEG00000011928)	PANX1 (ENSAMEG00000011923)	HEPHL1 (ENSAMEG00000012916)	VSTM5 (ENSAMEG00000023824)	MED17 (ENSAMEG00000012892)	C11orf54 (ENSAMEG00000012862)	TAF1D (ENSAMEG00000012858)	CEP295 (ENSAMEG00000012848)	SMCO4 (ENSAMEG00000020097)	DEUP1 (ENSAMEG00000015849)	SLC36A4 (ENSAMEG00000015861)	FAT3 (ENSAMEG00000004298)	ENSAMEG00000028153	ENSAMEG00000007577	ENSAMEG00000007477
Mustelinae	ANCESTRAL SPECIES	25	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823.a	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
American mink	MODERN SPECIES	6	MAML2 (ENSNVIG00000005971)	MTMR2 (ENSNVIG00000005888)	CEP57 (ENSNVIG00000005774)	FAM76B (ENSNVIG00000005739)	SESN3 (ENSNVIG00000005698)	ENDOD1 (ENSNVIG00000005691)	ENSNVIG00000005674	ENSNVIG00000005671	CWC15 (ENSNVIG00000005664)	AMOTL1 (ENSNVIG00000005602)	PIWIL4 (ENSNVIG00000005560)	FUT4 (ENSNVIG00000005553)	C11orf97 (ENSNVIG00000005537)	ANKRD49 (ENSNVIG00000005521) #21	MRE11 (ENSNVIG00000005415)	GPR83 (ENSNVIG00000005397) #22	FOLR4 (ENSNVIG00000005363)	PANX1 (ENSNVIG00000005347)	HEPHL1 (ENSNVIG00000005290)	VSTM5 (ENSNVIG00000005272)	MED17 (ENSNVIG00000005216)	C11orf54 (ENSNVIG00000005179)	TAF1D (ENSNVIG00000005172)	CEP295 (ENSNVIG00000005105)	ENSNVIG00000005094	DEUP1 (ENSNVIG00000005001)	SLC36A4 (ENSNVIG00000004976)	MTNR1B (ENSNVIG00000004926)	FAT3 (ENSNVIG00000004831)	CHRD1 (ENSNVIG00000004738)	NAALAD2 (ENSNVIG00000004661)
Ferret	MODERN SPECIES	207	MAML2 (ENSMPUG00000012297)	MTMR2 (ENSMPUG00000012291)	CEP57 (ENSMPUG00000012287)	FAM76B (ENSMPUG00000012280)	ENSMPUG00000012279	SESN3 (ENSMPUG00000012272)	ENSMPUG00000012270	KDM4D (ENSMPUG00000012267)	CWC15 (ENSMPUG00000012265)	AMOTL1 (ENSMPUG00000012261)	PIWIL4 (ENSMPUG00000012256)	FUT4 (ENSMPUG00000019345)	ENSMPUG00000012255	ANKRD49 (ENSMPUG00000012252) #21	MRE11 (ENSMPUG00000012250)	GPR83 (ENSMPUG00000012244) #22	IZUMO1R (ENSMPUG00000012242)	PANX1 (ENSMPUG00000012239)	HEPHL1 (ENSMPUG00000012234)	ZBTB38 (ENSMPUG00000019344)	RASA2 (ENSMPUG00000012228)	RNF7 (ENSMPUG00000012222)	ENSMPUG00000012217	GRK7 (ENSMPUG00000012168)	ATP1B3 (ENSMPUG00000012165)	TFDP2 (ENSMPUG00000012159)	GK5 (ENSMPUG00000012150)	XRN1 (ENSMPUG00000012040)	ATR (ENSMPUG00000012022)	PLS1 (ENSMPUG00000011881)	TRPC1 (ENSMPUG00000011873)
Canidae	ANCESTRAL SPECIES	17	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823.b	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061.i.a	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a.h	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00950000183152.A.w.a	ENSGT00940000154174
Canis_lupus	ANCESTRAL SPECIES	21	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00940000162213.a.a.c.a.a	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.z	ENSGT00940000162152.y	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823.b	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061.i.a	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a.h	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000153314.a.b.a	ENSGT00950000183152.A.w.a
Dingo	MODERN SPECIES	245	CEP57 (ENSCAFG00020016478)	FAM76B (ENSCAFG00020016484)	ENSCAFG00020016489	ENSCAFG00020016496	ENSCAFG00020016504	ENSCAFG00020016506	ENSCAFG00020016510	ENSCAFG00020016513	CWC15 (ENSCAFG00020016515)	AMOTL1 (ENSCAFG00020016518)	PIWIL4 (ENSCAFG00020016521)	FUT4 (ENSCAFG00020016526)	ANKRD49 (ENSCAFG00020016528) #21	ENSCAFG00020016530	MRE11 (ENSCAFG00020016532)	GPR83 (ENSCAFG00020016538) #22	IZUMO1R (ENSCAFG00020016546)	PANX1 (ENSCAFG00020016561)	HEPHL1 (ENSCAFG00020016564)	VSTM5 (ENSCAFG00020016572)	MED17 (ENSCAFG00020016574)	C11orf54 (ENSCAFG00020016576)	CEP295 (ENSCAFG00020016598)	SMCO4 (ENSCAFG00020016620)	ENSCAFG00020016621	ENSCAFG00020016631	SLC36A4 (ENSCAFG00020016637)	MTNR1B (ENSCAFG00020016646)	FAT3 (ENSCAFG00020016652)	ENSCAFG00020016668	ENSCAFG00020016670
Dog	MODERN SPECIES	13	CEP57 (ENSCAFG00845017787)	FAM76B (ENSCAFG00845018160)	ENSCAFG00845018846	SESN3 (ENSCAFG00845018942)	ENDOD1 (ENSCAFG00845019180)	ENSCAFG00845019240	ENSCAFG00845019286	CWC15 (ENSCAFG00845019309)	AMOTL1 (ENSCAFG00845019406)	PIWIL4 (ENSCAFG00845019963)	FUT4 (ENSCAFG00845020086)	ENSCAFG00845020114	ENSCAFG00845020169	ANKRD49 (ENSCAFG00845020201) #21	MRE11 (ENSCAFG00845020248)	GPR83 (ENSCAFG00845020430) #22	IZUMO1R (ENSCAFG00845020509)	PANX1 (ENSCAFG00845020558)	HEPHL1 (ENSCAFG00845020630)	ENSCAFG00845020781	MED17 (ENSCAFG00845020829)	C11orf54 (ENSCAFG00845020928)	ENSCAFG00845021166	CEP295 (ENSCAFG00845021425)	DEUP1 (ENSCAFG00845022176)	SMCO4 (ENSCAFG00845022789)	ENSCAFG00845022822	SLC36A4 (ENSCAFG00845023100)	MTNR1B (ENSCAFG00845023202)	ENSCAFG00845023311	ENSCAFG00845023937
Red fox	MODERN SPECIES	12	MTMR2 (ENSVVUG00000011747)	ENSVVUG00000011726	FAM76B (ENSVVUG00000011705)	SESN3 (ENSVVUG00000011684)	ENDOD1 (ENSVVUG00000011659)	KDM4D (ENSVVUG00000011656)	ENSVVUG00000011648	ENSVVUG00000011644	AMOTL1 (ENSVVUG00000011602)	PIWIL4 (ENSVVUG00000011577)	FUT4 (ENSVVUG00000011573)	ENSVVUG00000011567	ENSVVUG00000011564	ANKRD49 (ENSVVUG00000011561) #21	MRE11 (ENSVVUG00000011537)	GPR83 (ENSVVUG00000011530) #22	ENSVVUG00000011513	PANX1 (ENSVVUG00000011503)	HEPHL1 (ENSVVUG00000011481)	ENSVVUG00000011475	VSTM5 (ENSVVUG00000011473)	MED17 (ENSVVUG00000011459)	CUNH11orf54 (ENSVVUG00000011455)	CEP295 (ENSVVUG00000011351)	DEUP1 (ENSVVUG00000011271)	SLC36A4 (ENSVVUG00000011262)	FAT3 (ENSVVUG00000009801)	ENSVVUG00000009657	ENSVVUG00000009648	ENSVVUG00000009615	ENSVVUG00000009594
Felidae	ANCESTRAL SPECIES		ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.t	ENSGT00940000162152.s	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Panthera	ANCESTRAL SPECIES	23	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.s	ENSGT00390000012084.y.b	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Panthera_a	ANCESTRAL SPECIES	24	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.s.a	ENSGT00390000012084.y.a.a	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
leopard	MODERN SPECIES	17	CEP57 (ENSPPRG00000003241)	FAM76B (ENSPPRG00000003510)	SESN3 (ENSPPRG00000003990)	ENSPPRG00000004139	ENSPPRG00000004151	ENSPPRG00000014900	ENSPPRG00000014906	ENSPPRG00000014918	ENSPPRG00000005063	AMOTL1 (ENSPPRG00000007186)	PIWIL4 (ENSPPRG00000007432)	FUT4 (ENSPPRG00000014970)	C11orf97 (ENSPPRG00000007748)	ANKRD49 (ENSPPRG00000008157) #21	MRE11 (ENSPPRG00000010728)	GPR83 (ENSPPRG00000011279) #22	IZUMO1R (ENSPPRG00000011844)	PANX1 (ENSPPRG00000012085)	HEPHL1 (ENSPPRG00000012328)	VSTM5 (ENSPPRG00000012542)	MED17 (ENSPPRG00000014853)	C11orf54 (ENSPPRG00000022726)	TAF1D (ENSPPRG00000000132)	CEP295 (ENSPPRG00000002239)	SMCO4 (ENSPPRG00000015134)	DEUP1 (ENSPPRG00000003992)	SLC36A4 (ENSPPRG00000004146)	MTNR1B (ENSPPRG00000004216)	ENSPPRG00000005678	FAT3 (ENSPPRG00000007707)	ENSPPRG00000008409
lion	MODERN SPECIES	10	CCDC82 (ENSPLOG00000016852)	MAML2 (ENSPLOG00000016912)	MTMR2 (ENSPLOG00000016998)	CEP57 (ENSPLOG00000017062)	FAM76B (ENSPLOG00000017383)	SESN3 (ENSPLOG00000017658)	ENDOD1 (ENSPLOG00000017790)	KDM4D (ENSPLOG00000017815)	ENSPLOG00000017871	AMOTL1 (ENSPLOG00000017940)	PIWIL4 (ENSPLOG00000018141)	FUT4 (ENSPLOG00000010997)	C11orf97 (ENSPLOG00000011026)	ANKRD49 (ENSPLOG00000011102) #21	MRE11 (ENSPLOG00000011192)	GPR83 (ENSPLOG00000011474) #22	IZUMO1R (ENSPLOG00000011548)	PANX1 (ENSPLOG00000011611)	HEPHL1 (ENSPLOG00000011658)	ENSPLOG00000011835	VSTM5 (ENSPLOG00000011932)	MED17 (ENSPLOG00000012011)	C11orf54 (ENSPLOG00000012138)	TAF1D (ENSPLOG00000012430)	CEP295 (ENSPLOG00000012597)	SMCO4 (ENSPLOG00000012661)	DEUP1 (ENSPLOG00000012693)	SLC36A4 (ENSPLOG00000012924)	ENSPLOG00000013078	MTNR1B (ENSPLOG00000013104)	ENSPLOG00000013143
Tiger	MODERN SPECIES	123	JRKL (ENSPTIG00000010065)	CCDC82 (ENSPTIG00000006366)	MAML2 (ENSPTIG00000005913)	MTMR2 (ENSPTIG00000005248)	CEP57 (ENSPTIG00000002807)	FAM76B (ENSPTIG00000000581)	SESN3 (ENSPTIG00000000066)	ENDOD1 (ENSPTIG00000021253)	KDM4D (ENSPTIG00000021192)	ENSPTIG00000021149	AMOTL1 (ENSPTIG00000021027)	PIWIL4 (ENSPTIG00000020931)	C11orf97 (ENSPTIG00000020857)	ANKRD49 (ENSPTIG00000020842) #21	MRE11 (ENSPTIG00000020482)	GPR83 (ENSPTIG00000020384) #22	IZUMO1R (ENSPTIG00000020317)	PANX1 (ENSPTIG00000020245)	HEPHL1 (ENSPTIG00000020126)	VSTM5 (ENSPTIG00000020099)	MED17 (ENSPTIG00000019841)	C11orf54 (ENSPTIG00000019745)	TAF1D (ENSPTIG00000019674)	CEP295 (ENSPTIG00000018669)	SMCO4 (ENSPTIG00000010019)	DEUP1 (ENSPTIG00000018347)	SLC36A4 (ENSPTIG00000018252)	MTNR1B (ENSPTIG00000018222)	ENSPTIG00000018103	ENSPTIG00000018013	ENSPTIG00000017905
Cat	MODERN SPECIES	241	MAML2 (ENSFCAG00000012287)	MTMR2 (ENSFCAG00000030514)	CEP57 (ENSFCAG00000025537)	FAM76B (ENSFCAG00000026051)	SESN3 (ENSFCAG00000005081)	ENDOD1 (ENSFCAG00000005079)	ENSFCAG00000043892	ENSFCAG00000045743	CWC15 (ENSFCAG00000007826)	AMOTL1 (ENSFCAG00000010915)	PIWIL4 (ENSFCAG00000010914)	FUT4 (ENSFCAG00000029438)	CD1H11orf97 (ENSFCAG00000036846)	ANKRD49 (ENSFCAG00000042246) #21	MRE11 (ENSFCAG00000025219)	GPR83 (ENSFCAG00000010910) #22	IZUMO1R (ENSFCAG00000003023)	PANX1 (ENSFCAG00000004470)	HEPHL1 (ENSFCAG00000014735)	VSTM5 (ENSFCAG00000023848)	MED17 (ENSFCAG00000012475)	CD1H11orf54 (ENSFCAG00000012474)	TAF1D (ENSFCAG00000012473)	CEP295 (ENSFCAG00000028136)	DEUP1 (ENSFCAG00000006337)	SLC36A4 (ENSFCAG00000029109)	MTNR1B (ENSFCAG00000003193)	ENSFCAG00000030530	FAT3 (ENSFCAG00000022245)	CHORDC1 (ENSFCAG00000019389)	NAALAD2 (ENSFCAG00000025290)
Laurasiatheria_c	ANCESTRAL SPECIES	23	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994
Chiroptera	ANCESTRAL SPECIES	33	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994
Microchiroptera	ANCESTRAL SPECIES	34	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994
Microbat	MODERN SPECIES	1041	ENSMLUG00000028921	CEP57 (ENSMLUG00000013618)	FAM76B (ENSMLUG00000013608)	ENSMLUG00000027497	SESN3 (ENSMLUG00000014498)	ENDOD1 (ENSMLUG00000014495)	ENSMLUG00000026834	ENSMLUG00000025372	ENSMLUG00000028321	ENSMLUG00000002032	AMOTL1 (ENSMLUG00000002026)	PIWIL4 (ENSMLUG00000002018)	C11orf97 (ENSMLUG00000025421)	ANKRD49 (ENSMLUG00000002017) #21	MRE11 (ENSMLUG00000002006)	GPR83 (ENSMLUG00000016975) #22	IZUMO1R (ENSMLUG00000000463)	PANX1 (ENSMLUG00000000460)	HEPHL1 (ENSMLUG00000008248)	ENSMLUG00000022473	VSTM5 (ENSMLUG00000029725)	MED17 (ENSMLUG00000011467)	C11orf54 (ENSMLUG00000011443)	ENSMLUG00000011431	CEP295 (ENSMLUG00000011383)	SMCO4 (ENSMLUG00000006975)	DEUP1 (ENSMLUG00000015504)	ENSMLUG00000030695	SLC36A4 (ENSMLUG00000005983)	ENSMLUG00000001084	MTNR1B (ENSMLUG00000011618)
Greater horseshoe bat	MODERN SPECIES	2	MAML2 (ENSRFEG00010021043)	MTMR2 (ENSRFEG00010021018)	CEP57 (ENSRFEG00010020926)	FAM76B (ENSRFEG00010020857)	SESN3 (ENSRFEG00010020812)	ENDOD1 (ENSRFEG00010020792)	ENSRFEG00010020772	ENSRFEG00010020755	CWC15 (ENSRFEG00010020742)	AMOTL1 (ENSRFEG00010020674)	PIWIL4 (ENSRFEG00010020425)	FUT4 (ENSRFEG00010020392)	C11orf97 (ENSRFEG00010020369)	ANKRD49 (ENSRFEG00010020343) #21	MRE11 (ENSRFEG00010020173)	GPR83 (ENSRFEG00010020113) #22	IZUMO1R (ENSRFEG00010020055)	PANX1 (ENSRFEG00010020003)	HEPHL1 (ENSRFEG00010019856)	ENSRFEG00010019751	VSTM5 (ENSRFEG00010019719)	MED17 (ENSRFEG00010019676)	C11orf54 (ENSRFEG00010019588)	TAF1D (ENSRFEG00010019531)	CEP295 (ENSRFEG00010019371)	ENSRFEG00010019320	DEUP1 (ENSRFEG00010019047)	SLC36A4 (ENSRFEG00010018971)	MTNR1B (ENSRFEG00010018917)	FAT3 (ENSRFEG00010018861)	ENSRFEG00010018842
Megabat	MODERN SPECIES	8435																GPR83 (ENSPVAG00000009126) #22
Equus	ANCESTRAL SPECIES	25	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.ab	ENSGT00940000162152.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994
Donkey	MODERN SPECIES	12	ENSEASG00005036655	MTMR2 (ENSEASG00005011224)	CEP57 (ENSEASG00005011227)	FAM76B (ENSEASG00005011231)	SESN3 (ENSEASG00005011270)	ENDOD1 (ENSEASG00005028824)	ENSEASG00005011277	ENSEASG00005028515	CWC15 (ENSEASG00005011279)	AMOTL1 (ENSEASG00005011287)	PIWIL4 (ENSEASG00005027983)	FUT4 (ENSEASG00005011312)	C11orf97 (ENSEASG00005011314)	ANKRD49 (ENSEASG00005032651) #21	MRE11 (ENSEASG00005011342)	GPR83 (ENSEASG00005012119) #22	IZUMO1R (ENSEASG00005035464)	PANX1 (ENSEASG00005012200)	HEPHL1 (ENSEASG00005012218)	ENSEASG00005012238	VSTM5 (ENSEASG00005012241)	MED17 (ENSEASG00005012254)	C11orf54 (ENSEASG00005012286)	TAF1D (ENSEASG00005012293)	CEP295 (ENSEASG00005012313)	SMCO4 (ENSEASG00005012324)	DEUP1 (ENSEASG00005012331)	SLC36A4 (ENSEASG00005012341)	MTNR1B (ENSEASG00005012345)	ENSEASG00005012365	FAT3 (ENSEASG00005012460)
Horse	MODERN SPECIES	28	MAML2 (ENSECAG00000014537)	MTMR2 (ENSECAG00000018921)	CEP57 (ENSECAG00000010938)	FAM76B (ENSECAG00000005330)	SESN3 (ENSECAG00000017743)	ENSECAG00000030703	ENDOD1 (ENSECAG00000017667)	ENSECAG00000036765	ENSECAG00000057140	CWC15 (ENSECAG00000013314)	AMOTL1 (ENSECAG00000012681)	FUT4 (ENSECAG00000024199)	PIWIL4 (ENSECAG00000024385)	ANKRD49 (ENSECAG00000024188) #21	MRE11 (ENSECAG00000000295)	GPR83 (ENSECAG00000020552) #22	ANGPTL4 (ENSECAG00000018927)	KANK3 (ENSECAG00000017445)	NDUFA7 (ENSECAG00000014853)	CD320 (ENSECAG00000013583)	CERS4 (ENSECAG00000000369)	FBN3 (ENSECAG00000036087)	CCL25 (ENSECAG00000020264)	ELAVL1 (ENSECAG00000019459)	TIMM44 (ENSECAG00000011409)	SNAPC2 (ENSECAG00000011011)	TGFBR3L (ENSECAG00000031937)	MAP2K7 (ENSECAG00000009412)	LRRC8E (ENSECAG00000000299)	PRR36 (ENSECAG00000033073)	EVI5L (ENSECAG00000023878)
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Suina	ANCESTRAL SPECIES	5	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Pig	MODERN SPECIES	17	SESN3 (ENSSSCG00000037015)	ENDOD1 (ENSSSCG00000014965)	ENSSSCG00000054911	ENSSSCG00000057445	ENSSSCG00000057084	ENSSSCG00000036400	ENSSSCG00000034794	ENSSSCG00000031376	CWC15 (ENSSSCG00000014961)	AMOTL1 (ENSSSCG00000014960)	PIWIL4 (ENSSSCG00000014959)	ENSSSCG00000062029	C11orf97 (ENSSSCG00000014957)	ANKRD49 (ENSSSCG00000014956) #21	MRE11 (ENSSSCG00000014955)	GPR83 (ENSSSCG00000022490) #22	IZUMO1R (ENSSSCG00000014952)	PANX1 (ENSSSCG00000032360)	HEPHL1 (ENSSSCG00000030461)	ENSSSCG00000041237	VSTM5 (ENSSSCG00000014950)	MED17 (ENSSSCG00000014949)	C11orf54 (ENSSSCG00000014948)	TAF1D (ENSSSCG00000038682)	CEP295 (ENSSSCG00000014946)	SMCO4 (ENSSSCG00000057259)	DEUP1 (ENSSSCG00000014943)	SLC36A4 (ENSSSCG00000024933)	MTNR1B (ENSSSCG00000014939)	ENSSSCG00000034113	ENSSSCG00000014935
Chacoan peccary	MODERN SPECIES	30	MTMR2 (ENSCWAG00000001726)	CEP57 (ENSCWAG00000001747)	FAM76B (ENSCWAG00000001765)	SESN3 (ENSCWAG00000001788)	ENDOD1 (ENSCWAG00000001818)	KDM4D (ENSCWAG00000001831)	ENSCWAG00000001839	CWC15 (ENSCWAG00000001851)	AMOTL1 (ENSCWAG00000001874)	PIWIL4 (ENSCWAG00000001925)	ENSCWAG00000001987	ENSCWAG00000001993	ANKRD49 (ENSCWAG00000002004) #21	MRE11 (ENSCWAG00000002025)	NACA2 (ENSCWAG00000002065)	GPR83 (ENSCWAG00000002075) #22	IZUMO1R (ENSCWAG00000002109)	PANX1 (ENSCWAG00000002126)	HEPHL1 (ENSCWAG00000002145)	VSTM5 (ENSCWAG00000002173)	MED17 (ENSCWAG00000002193)	C11orf54 (ENSCWAG00000002241)	TAF1D (ENSCWAG00000002303)	CEP295 (ENSCWAG00000002365)	ENSCWAG00000002405	DEUP1 (ENSCWAG00000002415)	SLC36A4 (ENSCWAG00000002448)	MTNR1B (ENSCWAG00000002467)	FAT3 (ENSCWAG00000002509)	CHORDC1 (ENSCWAG00000002615)	NAALAD2 (ENSCWAG00000002648)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000162741.i.b	ENSGT00940000154981	ENSGT00940000154174
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.n.a	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.q.a	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.n.a	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.q.a	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000161513	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.n.a	ENSGT00390000012084.w	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.q.a	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00940000156185.s	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000161513	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.n.a.b	ENSGT00390000012084.w	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT00940000153309.d.g	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.q.a	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00940000156185.s.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000161513	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.n.a.b	ENSGT00390000012084.w	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT00940000153309.d.g	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.q.a	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013276.r	ENSGT00940000156185.s.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341
Beluga whale	MODERN SPECIES	87	JRKL (ENSDLEG00000019346)	CCDC82 (ENSDLEG00000019354)	ENSDLEG00000019362	ENSDLEG00000019364	MTMR2 (ENSDLEG00000008099)	CEP57 (ENSDLEG00000008152)	FAM76B (ENSDLEG00000008194)	SESN3 (ENSDLEG00000008313)	ENDOD1 (ENSDLEG00000008365)	CWC15 (ENSDLEG00000008381)	AMOTL1 (ENSDLEG00000008425)	PIWIL4 (ENSDLEG00000008525)	FUT4 (ENSDLEG00000008615)	ANKRD49 (ENSDLEG00000008640) #21	MRE11 (ENSDLEG00000008671)	GPR83 (ENSDLEG00000008769) #22	IZUMO1R (ENSDLEG00000008834)	PANX1 (ENSDLEG00000009144)	HEPHL1 (ENSDLEG00000009188)	ENSDLEG00000009395	VSTM5 (ENSDLEG00000009404)	MED17 (ENSDLEG00000009424)	ENSDLEG00000009480	TAF1D (ENSDLEG00000009654)	CEP295 (ENSDLEG00000009788)	ENSDLEG00000010853	ENSDLEG00000010859	SMCO4 (ENSDLEG00000010877)	ENSDLEG00000010889	SLC36A4 (ENSDLEG00000010919)	MTNR1B (ENSDLEG00000010941)
Narwhal	MODERN SPECIES	314	JRKL (ENSMMNG00015019272)	CCDC82 (ENSMMNG00015019297)	MAML2 (ENSMMNG00015019358)	MTMR2 (ENSMMNG00015019396)	CEP57 (ENSMMNG00015019470)	FAM76B (ENSMMNG00015019558)	SESN3 (ENSMMNG00015019600)	ENDOD1 (ENSMMNG00015019650)	ENSMMNG00015019662	ENSMMNG00015019674	AMOTL1 (ENSMMNG00015019700)	PIWIL4 (ENSMMNG00015019794)	FUT4 (ENSMMNG00015019851)	ANKRD49 (ENSMMNG00015019870) #21	MRE11 (ENSMMNG00015019911)	GPR83 (ENSMMNG00015020020) #22	IZUMO1R (ENSMMNG00015020047)	PANX1 (ENSMMNG00015020072)	HEPHL1 (ENSMMNG00015020099)	VSTM5 (ENSMMNG00015020170)	MED17 (ENSMMNG00015020217)	ENSMMNG00015020304	TAF1D (ENSMMNG00015020380)	CEP295 (ENSMMNG00015020472)	ENSMMNG00015020536	ENSMMNG00015020542	SMCO4 (ENSMMNG00015020556)	DEUP1 (ENSMMNG00015020581)	SLC36A4 (ENSMMNG00015020630)	MTNR1B (ENSMMNG00015020672)	FAT3 (ENSMMNG00015020732)
Vaquita	MODERN SPECIES	19	CCDC82 (ENSPSNG00000011116)	MAML2 (ENSPSNG00000011258)	ENSPSNG00000011365	CEP57 (ENSPSNG00000011486)	FAM76B (ENSPSNG00000011736)	SESN3 (ENSPSNG00000011827)	ENDOD1 (ENSPSNG00000012066)	ENSPSNG00000012161	ENSPSNG00000012220	ENSPSNG00000012253	AMOTL1 (ENSPSNG00000012299)	PIWIL4 (ENSPSNG00000012478)	ENSPSNG00000012714	ANKRD49 (ENSPSNG00000012741) #21	MRE11 (ENSPSNG00000012783)	GPR83 (ENSPSNG00000013087) #22	IZUMO1R (ENSPSNG00000013201)	PANX1 (ENSPSNG00000013265)	HEPHL1 (ENSPSNG00000013322)	ENSPSNG00000013594	VSTM5 (ENSPSNG00000013668)	MED17 (ENSPSNG00000013775)	TAF1D (ENSPSNG00000013901)	ENSPSNG00000013981	CEP295 (ENSPSNG00000014268)	ENSPSNG00000014662	DEUP1 (ENSPSNG00000014794)	SLC36A4 (ENSPSNG00000014913)	MTNR1B (ENSPSNG00000014997)	FAT3 (ENSPSNG00000015176)	CHORDC1 (ENSPSNG00000015361)
Dolphin	MODERN SPECIES	5114																GPR83 (ENSTTRG00000001144) #22
Sperm whale	MODERN SPECIES	7	SESN3 (ENSPCTG00005011709)	ENSPCTG00005011830	ENSPCTG00005011881	ENDOD1 (ENSPCTG00005011905)	ENSPCTG00005011937	ENSPCTG00005012004	ENSPCTG00005012039	CWC15 (ENSPCTG00005012079)	AMOTL1 (ENSPCTG00005012114)	PIWIL4 (ENSPCTG00005012159)	FUT4 (ENSPCTG00005012401)	C11orf97 (ENSPCTG00005012423)	ANKRD49 (ENSPCTG00005012473) #21	MRE11 (ENSPCTG00005004248)	ENSPCTG00005004432	GPR83 (ENSPCTG00005004449) #22	IZUMO1R (ENSPCTG00005004480)	PANX1 (ENSPCTG00005004492)	HEPHL1 (ENSPCTG00005004530)	ENSPCTG00005004559	ENSPCTG00005004592	VSTM5 (ENSPCTG00005004678)	MED17 (ENSPCTG00005004711)	C16H11orf54 (ENSPCTG00005004783)	TAF1D (ENSPCTG00005004998)	CEP295 (ENSPCTG00005005109)	ENSPCTG00005005216	ENSPCTG00005005223	DEUP1 (ENSPCTG00005005239)	SLC36A4 (ENSPCTG00005005320)	MTNR1B (ENSPCTG00005005362)
Blue whale	MODERN SPECIES	19	SESN3 (ENSBMSG00010007953)	ENDOD1 (ENSBMSG00010007966)	ENSBMSG00010007972	ENSBMSG00010007975	ENSBMSG00010007984	ENSBMSG00010007988	CWC15 (ENSBMSG00010007991)	AMOTL1 (ENSBMSG00010007997)	ENSBMSG00010008011	ENSBMSG00010008013	ENSBMSG00010008018	C11orf97 (ENSBMSG00010008028)	ENSBMSG00010008035	ANKRD49 (ENSBMSG00010008053) #21	MRE11 (ENSBMSG00010008081)	GPR83 (ENSBMSG00010008125) #22	IZUMO1R (ENSBMSG00010008153)	PANX1 (ENSBMSG00010008164)	HEPHL1 (ENSBMSG00010008172)	ENSBMSG00010008183	ENSBMSG00010008190	MED17 (ENSBMSG00010008219)	ENSBMSG00010008251	TAF1D (ENSBMSG00010008284)	CEP295 (ENSBMSG00010008344)	ENSBMSG00010008389	SMCO4 (ENSBMSG00010008401)	DEUP1 (ENSBMSG00010008417)	SLC36A4 (ENSBMSG00010008445)	MTNR1B (ENSBMSG00010008461)	FAT3 (ENSBMSG00010008516)
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000159759	ENSGT00940000162085	ENSGT00940000157450	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j
Yarkand deer	MODERN SPECIES		MMP13 (ENSCHYG00000000652)	DCUN1D5 (ENSCHYG00000000628)	DYNC2H1 (ENSCHYG00000000537)	DDI1 (ENSCHYG00000000457)	PDGFD (ENSCHYG00000000341)	ENSCHYG00000000233	ENSCHYG00000000211	ENSCHYG00000000171	ENSCHYG00000000131	GRIA4 (ENSCHYG00000000113)	MSANTD4 (ENSCHYG00000000065)	KBTBD3 (ENSCHYG00000000060)	ENSCHYG00000000056	ANKRD49 (ENSCHYG00000000041) #21	MRE11 (ENSCHYG00000000023)	GPR83 (ENSCHYG00000000012) #22	IZUMO1R (ENSCHYG00000000006)
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000159759	ENSGT00940000162085	ENSGT00940000157450	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j
Siberian musk deer	MODERN SPECIES	1172	DCUN1D5 (ENSMMSG00000020795)	DYNC2H1 (ENSMMSG00000020899)	ENSMMSG00000008190	ENSMMSG00000008228	ENSMMSG00000008237	PDGFD (ENSMMSG00000008276)	DDI1 (ENSMMSG00000008336)	ENSMMSG00000008366	ENSMMSG00000008496	GRIA4 (ENSMMSG00000008872)	ENSMMSG00000008975	KBTBD3 (ENSMMSG00000009059)	AASDHPPT (ENSMMSG00000009083)	ANKRD49 (ENSMMSG00000009101) #21	ENSMMSG00000009157	GPR83 (ENSMMSG00000009714) #22	IZUMO1R (ENSMMSG00000009745)	ENSMMSG00000009805	ENSMMSG00000009864	ENSMMSG00000009899	ENSMMSG00000009911
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000162085	ENSGT00940000157450	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000171276	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000154976.p.b.b	ENSGT00940000154261.q.b.a.a	ENSGT00940000154976.p.a	ENSGT00940000162608.b.b.a.a.b
Bovinae	ANCESTRAL SPECIES	21	ENSGT00940000162085	ENSGT00940000157450	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000171276	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000158647.g.a.c	ENSGT00900000141017.c.b.b	ENSGT00940000154976.p.b.b	ENSGT00940000154261.q.b.a.b.c	ENSGT00940000154970.e.a.a.b.a	ENSGT00940000154261.q.b.a.a	ENSGT00940000154261.q.b.b.a	ENSGT00940000154976.p.a	ENSGT00940000154970.e.a.a.a.a.a	ENSGT01100000263503.E.d.b	ENSGT01100000263503.E.d.a.a.b.b.l
Bos	ANCESTRAL SPECIES	20	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000163552.a.b.b.a	ENSGT00940000171276	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415.f	ENSGT00390000004663.k	ENSGT00390000004663.l	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000158647.g.a.c	ENSGT00940000154976.p.b.b	ENSGT00940000154261.q.b.a.b.c	ENSGT00940000154970.e.a.a.b.a	ENSGT00940000154261.q.b.a.a	ENSGT00940000154970.e.a.b	ENSGT00900000141017.d	ENSGT00940000158647.g.b	ENSGT00940000154970.e.b	ENSGT00940000159605.o.b.b.b.e.b.b.a	ENSGT00940000154333.b.b.a	ENSGT01100000263503.E.c.a.b.w	ENSGT01100000263503.E.c.a.a.a.m.a.b
Bos_a	ANCESTRAL SPECIES	15	ENSGT00940000157450	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000163552.a.b.b.a	ENSGT00940000171276	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415.f	ENSGT00390000004663.k	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22
Wild yak	MODERN SPECIES	2007														ANKRD49 (ENSBMUG00000004446) #21	MRE11 (ENSBMUG00000004495)	GPR83 (ENSBMUG00000004538) #22
Bos_b	ANCESTRAL SPECIES	19	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000163552.a.b.b.a	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000174020.a.b	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415.f	ENSGT00390000004663.k	ENSGT00390000004663.l	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000158647.g.a.c	ENSGT00940000154976.p.b.b	ENSGT00940000154261.q.b.a.b.c	ENSGT00940000154970.e.a.a.b.a	ENSGT00940000154261.q.b.a.a	ENSGT00940000154261.q.b.b.a	ENSGT00940000154976.p.a	ENSGT00940000154970.e.a.a.a.a.a	ENSGT00940000162608.b.b.a.a.b	ENSGT00940000154261.q.a.a.a.c	ENSGT00940000162374.p.b	ENSGT01100000263503.E.d.b	ENSGT01100000263503.E.d.a.a.b.b.l
Cow	MODERN SPECIES	6	ENSBTAG00000049312	DDI1 (ENSBTAG00000002887)	PDGFD (ENSBTAG00000034827)	ENSBTAG00000052675	ENSBTAG00000051613	ENSBTAG00000053811	CASP4 (ENSBTAG00000020884)	CASP1 (ENSBTAG00000050239)	ENSBTAG00000055258	GRIA4 (ENSBTAG00000006176)	MSANTD4 (ENSBTAG00000023989)	KBTBD3 (ENSBTAG00000005392)	AASDHPPT (ENSBTAG00000012279)	ANKRD49 (ENSBTAG00000009176) #21	MRE11 (ENSBTAG00000008925)	GPR83 (ENSBTAG00000008923) #22	IZUMO1R (ENSBTAG00000050890)	OR4C185 (ENSBTAG00000046387)	OR4C180 (ENSBTAG00000055028)	OR4C178 (ENSBTAG00000003023)	OR4C171P (ENSBTAG00000013156)	OR4C175 (ENSBTAG00000054290)	OR4C146 (ENSBTAG00000052871)	OR4A2H (ENSBTAG00000003930)	OR4C1I (ENSBTAG00000049795)	ENSBTAG00000049221	OR4C174 (ENSBTAG00000040008)	ENSBTAG00000052561	OR5M5 (ENSBTAG00000045558)	OR5M9 (ENSBTAG00000049790)
American bison	MODERN SPECIES	3269										GRIA4 (ENSBBBG00000013733)	MSANTD4 (ENSBBBG00000008502)	KBTBD3 (ENSBBBG00000002938)	AASDHPPT (ENSBBBG00000002944)	ANKRD49 (ENSBBBG00000013766) #21	MRE11 (ENSBBBG00000013835)	GPR83 (ENSBBBG00000013852) #22	IZUMO1R (ENSBBBG00000002977)	ENSBBBG00000002987	ENSBBBG00000002991	ENSBBBG00000003007	ENSBBBG00000003013	ENSBBBG00000013904
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000157450	ENSGT00940000156155	ENSGT00940000154620	ENSGT00940000159575	ENSGT00950000182999.a.b	ENSGT00940000171276	ENSGT00940000161497	ENSGT00940000159114	ENSGT01030000234886	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00390000003919 #21	ENSGT00390000017288.b	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000154976.p.a	ENSGT00940000158647.g.b	ENSGT00940000163528	ENSGT00940000154970.e.b	ENSGT01100000263503.E.d.b	ENSGT01100000263503.E.d.a.a.b.b.l
Goat	MODERN SPECIES	6	PDGFD (ENSCHIG00000006770)	DDI1 (ENSCHIG00000007991)	ENSCHIG00000008146	ENSCHIG00000023433	ENSCHIG00000013458	ENSCHIG00000020857	ENSCHIG00000009053	ENSCHIG00000019889	ENSCHIG00000022465	MSANTD4 (ENSCHIG00000021603)	ENSCHIG00000013896	KBTBD3 (ENSCHIG00000012819)	AASDHPPT (ENSCHIG00000017726)	ANKRD49 (ENSCHIG00000015614) #21	MRE11 (ENSCHIG00000021669)	GPR83 (ENSCHIG00000011152) #22	IZUMO1R (ENSCHIG00000027008)	ENSCHIG00000010035	ENSCHIG00000010849	OR4A15 (ENSCHIG00000020045)	ENSCHIG00000019565
Rambouillet Sheep	MODERN SPECIES	6	MMP12 (ENSOARG00020019763)	DCUN1D5 (ENSOARG00020019585)	DYNC2H1 (ENSOARG00020014518)	DDI1 (ENSOARG00020014392)	PDGFD (ENSOARG00020014159)	ENSOARG00020014135	ENSOARG00020013177	ENSOARG00020013115	ENSOARG00020013091	GRIA4 (ENSOARG00020012341)	MSANTD4 (ENSOARG00020012278)	KBTBD3 (ENSOARG00020012182)	AASDHPPT (ENSOARG00020012064)	ANKRD49 (ENSOARG00020012037) #21	MRE11 (ENSOARG00020011913)	GPR83 (ENSOARG00020011841) #22	ENSOARG00020011815	OR4C16 (ENSOARG00020011729)	ENSOARG00020011652	ENSOARG00020011556	ENSOARG00020011541	ENSOARG00020011492	ENSOARG00020011471	ENSOARG00020011426
Camelidae	ANCESTRAL SPECIES	32	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.o	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Arabian camel	MODERN SPECIES	1	ENSCDRG00005016889	MTMR2 (ENSCDRG00005016764)	CEP57 (ENSCDRG00005016540)	FAM76B (ENSCDRG00005016457)	SESN3 (ENSCDRG00005016152)	ENSCDRG00005016090	ENSCDRG00005016007	ENSCDRG00005015979	CWC15 (ENSCDRG00005015943)	AMOTL1 (ENSCDRG00005015718)	PIWIL4 (ENSCDRG00005015533)	FUT4 (ENSCDRG00005015443)	C11orf97 (ENSCDRG00005015394)	ANKRD49 (ENSCDRG00005015366) #21	MRE11 (ENSCDRG00005014968)	GPR83 (ENSCDRG00005014899) #22	IZUMO1R (ENSCDRG00005014865)	PANX1 (ENSCDRG00005014832)	HEPHL1 (ENSCDRG00005014678)	ENSCDRG00005014573	VSTM5 (ENSCDRG00005014480)	MED17 (ENSCDRG00005014246)	ENSCDRG00005013599	TAF1D (ENSCDRG00005013529)	ENSCDRG00005012255	ENSCDRG00005012157	DEUP1 (ENSCDRG00005012090)	SLC36A4 (ENSCDRG00005011954)	MTNR1B (ENSCDRG00005011909)	FAT3 (ENSCDRG00005011626)	CHORDC1 (ENSCDRG00005011505)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154336.d #22
Common shrew	MODERN SPECIES	1724																ENSSARG00000006354 #22
Hedgehog	MODERN SPECIES	2347																ENSEEUG00000001609 #22
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Tree shrew	MODERN SPECIES	4448																GPR83 (ENSTBEG00000006734) #22	IZUMO1R (ENSTBEG00000006316)
Glires	ANCESTRAL SPECIES	1	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Rodentia	ANCESTRAL SPECIES	1	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000169594	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000169594	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Kangaroo rat	MODERN SPECIES	433	ENSDORG00000015351	Fam168b (ENSDORG00000015352)	ENSDORG00000026195	ENSDORG00000026180	Hs6st1 (ENSDORG00000028206)	Uggt1 (ENSDORG00000003315)	Sap130 (ENSDORG00000015563)	Ammecr1l (ENSDORG00000028104)	Polr2d (ENSDORG00000026897)	Wdr33 (ENSDORG00000023513)	Lims2 (ENSDORG00000015051)	Gpr17 (ENSDORG00000015052)	Myo7b (ENSDORG00000015044)	Iws1 (ENSDORG00000007385)	ENSDORG00000004828	Gpr83 (ENSDORG00000004374) #22	Izumo1r (ENSDORG00000005007)	ENSDORG00000028004	Hephl1 (ENSDORG00000005176)	Vstm5 (ENSDORG00000004620)	Med17 (ENSDORG00000005005)	4931406C07Rik (ENSDORG00000005004)	Smco4 (ENSDORG00000001107)	Deup1 (ENSDORG00000011685)	Slc36a4 (ENSDORG00000027198)	ENSDORG00000002749	Mtnr1b (ENSDORG00000026210)	Fat3 (ENSDORG00000024314)
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Muroidea	ANCESTRAL SPECIES	29	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	1827							Sesn3 (ENSNGAG00000007814)	Endod1 (ENSNGAG00000019861)	Kdm4d (ENSNGAG00000019223)	Cwc15 (ENSNGAG00000016450)	Amotl1 (ENSNGAG00000012913)	Piwil4 (ENSNGAG00000022297)	1700012B09Rik (ENSNGAG00000013078)	Ankrd49 (ENSNGAG00000012789) #21	Mre11a (ENSNGAG00000010330)	Gpr83 (ENSNGAG00000015036) #22	Izumo1r (ENSNGAG00000009610)	Panx1 (ENSNGAG00000014760)	ENSNGAG00000004656	Hephl1 (ENSNGAG00000012499)	Vstm5 (ENSNGAG00000008846)	Med17 (ENSNGAG00000005765)	4931406C07Rik (ENSNGAG00000019210)	Cep295 (ENSNGAG00000020811)	Smco4 (ENSNGAG00000019710)	Deup1 (ENSNGAG00000015010)
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000167787	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.m	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Cricetinae	ANCESTRAL SPECIES	45	ENSGT00940000167787	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.m	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Golden Hamster	MODERN SPECIES	778					Sesn3 (ENSMAUG00000009718)	Endod1 (ENSMAUG00000010649)	Kdm4d (ENSMAUG00000010975)	Cwc15 (ENSMAUG00000011686)	Amotl1 (ENSMAUG00000012162)	Piwil4 (ENSMAUG00000011382)	Fut4 (ENSMAUG00000015849)	ENSMAUG00000015824	1700012B09Rik (ENSMAUG00000014010)	Ankrd49 (ENSMAUG00000014988) #21	ENSMAUG00000016290	Gpr83 (ENSMAUG00000017943) #22	Izumo1r (ENSMAUG00000018564)	ENSMAUG00000015032	ENSMAUG00000015499	Hephl1 (ENSMAUG00000017278)	Vstm5 (ENSMAUG00000000333)	Med17 (ENSMAUG00000000493)	4931406C07Rik (ENSMAUG00000000356)	Taf1d (ENSMAUG00000002515)	Smco4 (ENSMAUG00000000425)	Deup1 (ENSMAUG00000001957)	Slc36a4 (ENSMAUG00000001281)	Fat3 (ENSMAUG00000007614)	Chordc1 (ENSMAUG00000012157)	Naalad2 (ENSMAUG00000008805)
Chinese hamster chok1gshd	MODERN SPECIES	310								Kdm4d (ENSCGRG00001013157)	Cwc15 (ENSCGRG00001013337)	Amotl1 (ENSCGRG00001011579)	Piwil4 (ENSCGRG00001017873)	Fut4 (ENSCGRG00001013612)	1700012B09Rik (ENSCGRG00001015499)	Ankrd49 (ENSCGRG00001014107) #21	Mre11a (ENSCGRG00001006581)	Gpr83 (ENSCGRG00001018677) #22	Izumo1r (ENSCGRG00001016589)	PANX (ENSCGRG00001016361)	Hephl1 (ENSCGRG00001014172)	Vstm5 (ENSCGRG00001006156)	MED17 (ENSCGRG00001017473)	4931406C07Rik (ENSCGRG00001008949)	Taf1d (ENSCGRG00001004962)	Cep295 (ENSCGRG00001000538)	ENSCGRG00001018019	Smco4 (ENSCGRG00001013247)	Deup1 (ENSCGRG00001012085)	Slc36a4 (ENSCGRG00001005789)	Mtnr1b (ENSCGRG00001017947)	Fat3 (ENSCGRG00001016740)	ENSCGRG00001007587
Cricetidae_B	ANCESTRAL SPECIES	61								ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214.m	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Prairie vole	MODERN SPECIES	204								Kdm4d (ENSMOCG00000008583)	Cwc15 (ENSMOCG00000016094)	Amotl1 (ENSMOCG00000014408)	Piwil4 (ENSMOCG00000020261)	Fut4 (ENSMOCG00000012642)	1700012B09Rik (ENSMOCG00000020476)	Ankrd49 (ENSMOCG00000000210) #21	ENSMOCG00000011442	Gpr83 (ENSMOCG00000008157) #22	Izumo1r (ENSMOCG00000012181)	ENSMOCG00000010783	ENSMOCG00000012579	ENSMOCG00000018402	Hephl1 (ENSMOCG00000002936)
Northern American deer mouse	MODERN SPECIES	20	Msantd4 (ENSPEMG00000029468)	Kbtbd3 (ENSPEMG00000029070)	Aasdhppt (ENSPEMG00000016551)	ENSPEMG00000025699	Gucy1a2 (ENSPEMG00000021986)	Cwf19l2 (ENSPEMG00000022399)	Alkbh8 (ENSPEMG00000022020)	Kdm4d (ENSPEMG00000001845)	Cwc15 (ENSPEMG00000021432)	Amotl1 (ENSPEMG00000021905)	Piwil4 (ENSPEMG00000023859)	ENSPEMG00000025171	1700012B09Rik (ENSPEMG00000012698)	Mre11a (ENSPEMG00000023250)	ENSPEMG00000030623	Gpr83 (ENSPEMG00000022377) #22	Izumo1r (ENSPEMG00000021678)	Panx1 (ENSPEMG00000010979)	Hephl1 (ENSPEMG00000021631)	ENSPEMG00000002357	Vstm5 (ENSPEMG00000028348)	Med17 (ENSPEMG00000024047)	4931406C07Rik (ENSPEMG00000023421)	Taf1d (ENSPEMG00000023691)	Cep295 (ENSPEMG00000023772)	Smco4 (ENSPEMG00000027427)	Deup1 (ENSPEMG00000016493)	Slc36a4 (ENSPEMG00000023886)	Mtnr1b (ENSPEMG00000000316)	Fat3 (ENSPEMG00000013197)	ENSPEMG00000031155
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Rat	MODERN SPECIES	18	Ccdc82 (ENSRNOG00000005713)	Maml2 (ENSRNOG00000005879)	Mtmr2 (ENSRNOG00000005923)	Cep57 (ENSRNOG00000006792)	Fam76b (ENSRNOG00000024863)	Sesn3 (ENSRNOG00000008173)	Endod1 (ENSRNOG00000024757)	LOC108348070 (ENSRNOG00000045905)	Cwc15 (ENSRNOG00000008490)	Amotl1 (ENSRNOG00000008990)	Piwil4 (ENSRNOG00000009043)	Fut4 (ENSRNOG00000009157)	C8h11orf97 (ENSRNOG00000009203)	Ankrd49 (ENSRNOG00000009233) #21	Mre11 (ENSRNOG00000009506)	Gpr83 (ENSRNOG00000030318) #22	Izumo1r (ENSRNOG00000019894)	Panx1 (ENSRNOG00000010060)	Hephl1 (ENSRNOG00000056092)	ENSRNOG00000062992	Vstm5 (ENSRNOG00000010480)	Med17 (ENSRNOG00000010496)	C8h11orf54 (ENSRNOG00000010887)	Taf1d (ENSRNOG00000010921)	Cep295 (ENSRNOG00000010999)	Smco4 (ENSRNOG00000011162)	Deup1 (ENSRNOG00000061247)	Slc36a4 (ENSRNOG00000011455)	Mtnr1b (ENSRNOG00000008972)	Fat3 (ENSRNOG00000011585)	LOC689840 (ENSRNOG00000031522)
Mus	ANCESTRAL SPECIES	4	ENSGT00900000143517	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Shrew mouse	MODERN SPECIES	1	MGP_PahariEiJ_G0014650	Maml2 (MGP_PahariEiJ_G0014651)	Mtmr2 (MGP_PahariEiJ_G0014652)	Cep57 (MGP_PahariEiJ_G0014653)	Fam76b (MGP_PahariEiJ_G0014654)	Sesn3 (MGP_PahariEiJ_G0014655)	Endod1 (MGP_PahariEiJ_G0014656)	Kdm4d (MGP_PahariEiJ_G0014657)	Cwc15 (MGP_PahariEiJ_G0014658)	Amotl1 (MGP_PahariEiJ_G0014659)	Piwil4 (MGP_PahariEiJ_G0014660)	Fut4 (MGP_PahariEiJ_G0014661)	1700012B09Rik (MGP_PahariEiJ_G0014662)	Ankrd49 (MGP_PahariEiJ_G0014663) #21	Mre11a (MGP_PahariEiJ_G0014664)	Gpr83 (MGP_PahariEiJ_G0014665) #22	Izumo1r (MGP_PahariEiJ_G0014666)	Panx1 (MGP_PahariEiJ_G0014667)	MGP_PahariEiJ_G0014668	Vstm5 (MGP_PahariEiJ_G0014669)	Med17 (MGP_PahariEiJ_G0014670)	4931406C07Rik (MGP_PahariEiJ_G0014671)	MGP_PahariEiJ_G0014672	Cep295 (MGP_PahariEiJ_G0014673)	Smco4 (MGP_PahariEiJ_G0014674)	Deup1 (MGP_PahariEiJ_G0014675)	Slc36a4 (MGP_PahariEiJ_G0014676)	Mtnr1b (MGP_PahariEiJ_G0014677)	Fat3 (MGP_PahariEiJ_G0014678)	Chordc1 (MGP_PahariEiJ_G0014679)	MGP_PahariEiJ_G0014680
Mus_A	ANCESTRAL SPECIES	4	ENSGT00900000143517	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Ryukyu mouse	MODERN SPECIES	18	MGP_CAROLIEiJ_G0031774	Maml2 (MGP_CAROLIEiJ_G0031775)	Mtmr2 (MGP_CAROLIEiJ_G0031776)	Cep57 (MGP_CAROLIEiJ_G0031777)	Fam76b (MGP_CAROLIEiJ_G0031778)	Sesn3 (MGP_CAROLIEiJ_G0031779)	Endod1 (MGP_CAROLIEiJ_G0031780)	Kdm4d (MGP_CAROLIEiJ_G0031781)	Cwc15 (MGP_CAROLIEiJ_G0031782)	Amotl1 (MGP_CAROLIEiJ_G0031783)	Piwil4 (MGP_CAROLIEiJ_G0031784)	Fut4 (MGP_CAROLIEiJ_G0031785)	1700012B09Rik (MGP_CAROLIEiJ_G0031786)	Ankrd49 (MGP_CAROLIEiJ_G0031787) #21	Mre11a (MGP_CAROLIEiJ_G0031788)	Gpr83 (MGP_CAROLIEiJ_G0031789) #22	Izumo1r (MGP_CAROLIEiJ_G0031790)	Panx1 (MGP_CAROLIEiJ_G0031791)	Hephl1 (MGP_CAROLIEiJ_G0031792)	Vstm5 (MGP_CAROLIEiJ_G0031793)	Med17 (MGP_CAROLIEiJ_G0031794)	4931406C07Rik (MGP_CAROLIEiJ_G0031795)	Taf1d (MGP_CAROLIEiJ_G0031796)	Cep295 (MGP_CAROLIEiJ_G0031797)	Smco4 (MGP_CAROLIEiJ_G0031798)	Deup1 (MGP_CAROLIEiJ_G0031799)	Slc36a4 (MGP_CAROLIEiJ_G0031800)	Mtnr1b (MGP_CAROLIEiJ_G0031801)	Fat3 (MGP_CAROLIEiJ_G0031802)	Chordc1 (MGP_CAROLIEiJ_G0031803)	Naalad2 (MGP_CAROLIEiJ_G0031804)
Mus_B	ANCESTRAL SPECIES	3	ENSGT00900000143517	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Mouse	MODERN SPECIES	18	Maml2 (ENSMUSG00000031925)	Gm17571 (ENSMUSG00000090592)	Mtmr2 (ENSMUSG00000031918)	Cep57 (ENSMUSG00000031922)	Fam76b (ENSMUSG00000037808)	Sesn3 (ENSMUSG00000032009)	Endod1 (ENSMUSG00000037419)	Kdm4d (ENSMUSG00000053914)	Cwc15 (ENSMUSG00000004096)	Amotl1 (ENSMUSG00000013076)	Piwil4 (ENSMUSG00000036912)	Fut4 (ENSMUSG00000049307)	1700012B09Rik (ENSMUSG00000031927)	Ankrd49 (ENSMUSG00000031931) #21	Mre11a (ENSMUSG00000031928)	Gpr83 (ENSMUSG00000031932) #22	Izumo1r (ENSMUSG00000031933)	Panx1 (ENSMUSG00000031934)	Hephl1 (ENSMUSG00000031936)	Vstm5 (ENSMUSG00000031937)	Med17 (ENSMUSG00000031935)	4931406C07Rik (ENSMUSG00000031938)	Taf1d (ENSMUSG00000031939)	Cep295 (ENSMUSG00000046111)	Smco4 (ENSMUSG00000058173)	Deup1 (ENSMUSG00000039977)	Slc36a4 (ENSMUSG00000043885)	Mtnr1b (ENSMUSG00000050901)	Fat3 (ENSMUSG00000074505)	Chordc1 (ENSMUSG00000001774)	Naalad2 (ENSMUSG00000043943)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00900000143517	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000153052.c.b.b.b.d.a.a	ENSGT00940000154174
Steppe mouse	MODERN SPECIES	3318						Sesn3 (ENSMSIG00000017068)	ENSMSIG00000017048	Cwc15 (ENSMSIG00000017024)	Amotl1 (ENSMSIG00000016862)	Piwil4 (ENSMSIG00000016745)	Fut4 (ENSMSIG00000016738)	1700012B09Rik (ENSMSIG00000016716)	Ankrd49 (ENSMSIG00000016701) #21	Mre11a (ENSMSIG00000016606)	ENSMSIG00000016588	Gpr83 (ENSMSIG00000016567) #22	Izumo1r (ENSMSIG00000016359)	Panx1 (ENSMSIG00000016343)	Hephl1 (ENSMSIG00000016306)	Vstm5 (ENSMSIG00000016281)	Med17 (ENSMSIG00000016253)	4931406C07Rik (ENSMSIG00000016204)	Taf1d (ENSMSIG00000016165)	Cep295 (ENSMSIG00000015917)	ENSMSIG00000015880	Deup1 (ENSMSIG00000015751)	Slc36a4 (ENSMSIG00000015623)	Mtnr1b (ENSMSIG00000015621)	Fat3 (ENSMSIG00000015207)	ENSMSIG00000015183	ENSMSIG00000015180
spretus	MODERN SPECIES	18	MGP_SPRETEiJ_G0032894	Maml2 (MGP_SPRETEiJ_G0032895)	Mtmr2 (MGP_SPRETEiJ_G0032896)	Cep57 (MGP_SPRETEiJ_G0032897)	Fam76b (MGP_SPRETEiJ_G0032898)	Sesn3 (MGP_SPRETEiJ_G0032899)	Endod1 (MGP_SPRETEiJ_G0032900)	Kdm4d (MGP_SPRETEiJ_G0032901)	Cwc15 (MGP_SPRETEiJ_G0032902)	Amotl1 (MGP_SPRETEiJ_G0032903)	Piwil4 (MGP_SPRETEiJ_G0032904)	Fut4 (MGP_SPRETEiJ_G0032905)	1700012B09Rik (MGP_SPRETEiJ_G0032906)	Ankrd49 (MGP_SPRETEiJ_G0032907) #21	Mre11a (MGP_SPRETEiJ_G0032908)	MGP_SPRETEiJ_G0032909 #22	Izumo1r (MGP_SPRETEiJ_G0032910)	Panx1 (MGP_SPRETEiJ_G0032911)	Hephl1 (MGP_SPRETEiJ_G0032912)	Vstm5 (MGP_SPRETEiJ_G0032913)	Med17 (MGP_SPRETEiJ_G0032914)	4931406C07Rik (MGP_SPRETEiJ_G0032915)	Cep295 (MGP_SPRETEiJ_G0032916)	Smco4 (MGP_SPRETEiJ_G0032917)	Deup1 (MGP_SPRETEiJ_G0032918)	Slc36a4 (MGP_SPRETEiJ_G0032919)	MGP_SPRETEiJ_G0032920	Fat3 (MGP_SPRETEiJ_G0032921)	MGP_SPRETEiJ_G0032922	Chordc1 (MGP_SPRETEiJ_G0032923)	Naalad2 (MGP_SPRETEiJ_G0032924)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000169594	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.f
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.h	ENSGT00940000162152.g.b	ENSGT00940000162152.g.a	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.f	ENSGT01030000234598.b.a.b.k.b
Marmotini	ANCESTRAL SPECIES	20	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.h	ENSGT00940000162152.g.b	ENSGT00940000162152.g.a	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000178162	ENSGT00940000154174.f
Marmotini_b	ANCESTRAL SPECIES	155	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.g.b	ENSGT00940000162152.g.a	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000178162
Squirrel	MODERN SPECIES	274								KDM4D (ENSSTOG00000021726)	CWC15 (ENSSTOG00000002485)	AMOTL1 (ENSSTOG00000002462)	ENSSTOG00000006932	FUT4 (ENSSTOG00000006910)	C11orf97 (ENSSTOG00000032509)	ANKRD49 (ENSSTOG00000028263) #21	MRE11 (ENSSTOG00000006869)	GPR83 (ENSSTOG00000006859) #22	IZUMO1R (ENSSTOG00000032389)	ENSSTOG00000032468	PANX1 (ENSSTOG00000006851)	HEPHL1 (ENSSTOG00000026323)	ENSSTOG00000033997	VSTM5 (ENSSTOG00000025751)	MED17 (ENSSTOG00000008098)	C11orf54 (ENSSTOG00000008061)	TAF1D (ENSSTOG00000030516)	CEP295 (ENSSTOG00000008015)	SMCO4 (ENSSTOG00000008008)	DEUP1 (ENSSTOG00000011722)	SLC36A4 (ENSSTOG00000008854)	MTNR1B (ENSSTOG00000008849)	FAT3 (ENSSTOG00000008783)
Arctic ground squirrel	MODERN SPECIES	166				ENSUPAG00010002131	ENSUPAG00010002123	SESN3 (ENSUPAG00010002105)	ENDOD1 (ENSUPAG00010002099)	KDM4D (ENSUPAG00010002086)	CWC15 (ENSUPAG00010002076)	AMOTL1 (ENSUPAG00010002044)	PIWIL4 (ENSUPAG00010001982)	FUT4 (ENSUPAG00010001953)	C11orf97 (ENSUPAG00010001935)	ANKRD49 (ENSUPAG00010001896) #21	MRE11 (ENSUPAG00010001790)	GPR83 (ENSUPAG00010001763) #22	IZUMO1R (ENSUPAG00010001756)	ENSUPAG00010001744	PANX1 (ENSUPAG00010001730)	HEPHL1 (ENSUPAG00010001691)	VSTM5 (ENSUPAG00010001672)	MED17 (ENSUPAG00010001622)	C11orf54 (ENSUPAG00010001486)	TAF1D (ENSUPAG00010001478)	CEP295 (ENSUPAG00010001137)	DEUP1 (ENSUPAG00010000984)	SLC36A4 (ENSUPAG00010000949)	MTNR1B (ENSUPAG00010000937)	FAT3 (ENSUPAG00010000879)	ENSUPAG00010000873
Alpin marmot	MODERN SPECIES	25	FAM76B (ENSMMMG00000003496)	ENSMMMG00000003554	SESN3 (ENSMMMG00000003584)	ENDOD1 (ENSMMMG00000003657)	ENSMMMG00000003662	ENSMMMG00000003674	ENSMMMG00000003680	ENSMMMG00000003692	CWC15 (ENSMMMG00000003695)	AMOTL1 (ENSMMMG00000003717)	PIWIL4 (ENSMMMG00000003741)	FUT4 (ENSMMMG00000003775)	C11orf97 (ENSMMMG00000003791)	ANKRD49 (ENSMMMG00000003801) #21	MRE11 (ENSMMMG00000003822)	GPR83 (ENSMMMG00000003939) #22	IZUMO1R (ENSMMMG00000003960)	PANX1 (ENSMMMG00000003980)	HEPHL1 (ENSMMMG00000003995)	VSTM5 (ENSMMMG00000004034)	MED17 (ENSMMMG00000004045)	C11orf54 (ENSMMMG00000004067)	TAF1D (ENSMMMG00000004115)	CEP295 (ENSMMMG00000004214)	SMCO4 (ENSMMMG00000004447)	DEUP1 (ENSMMMG00000004469)	SLC36A4 (ENSMMMG00000004555)	MTNR1B (ENSMMMG00000004580)	FAT3 (ENSMMMG00000004600)	ENSMMMG00000004671	ENSMMMG00000004674
Eurasian red squirrel	MODERN SPECIES	2	MTMR2 (ENSSVLG00005010367)	CEP57 (ENSSVLG00005010241)	ENSSVLG00005010116	SESN3 (ENSSVLG00005009932)	ENDOD1 (ENSSVLG00005009881)	ENSSVLG00005009855	KDM4D (ENSSVLG00005009838)	CWC15 (ENSSVLG00005009802)	AMOTL1 (ENSSVLG00005009738)	PIWIL4 (ENSSVLG00005009583)	FUT4 (ENSSVLG00005009540)	C11orf97 (ENSSVLG00005009503)	ANKRD49 (ENSSVLG00005009488) #21	ENSSVLG00005009454	MRE11 (ENSSVLG00005009395)	GPR83 (ENSSVLG00005009337) #22	IZUMO1R (ENSSVLG00005009300)	PANX1 (ENSSVLG00005009275)	HEPHL1 (ENSSVLG00005009168)	VSTM5 (ENSSVLG00005009102)	MED17 (ENSSVLG00005009035)	C11orf54 (ENSSVLG00005008945)	TAF1D (ENSSVLG00005008868)	CEP295 (ENSSVLG00005024179)	SMCO4 (ENSSVLG00005024149)	DEUP1 (ENSSVLG00005024034)	ENSSVLG00005024017	SLC36A4 (ENSSVLG00005023972)	MTNR1B (ENSSVLG00005023956)	FAT3 (ENSSVLG00005023682)	ENSSVLG00005023505
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084.u	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000169594	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.f
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084.u	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000169594	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.f
Hystricomorpha_b	ANCESTRAL SPECIES	5														ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000169594	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.f
Degu	MODERN SPECIES	250														ENSODEG00000001233	ENSODEG00000001221 #21	GPR83 (ENSODEG00000000724) #22	IZUMO1R (ENSODEG00000000695)	ENSODEG00000000623	ENSODEG00000000644	HEPHL1 (ENSODEG00000002492)	ENSODEG00000002422	VSTM5 (ENSODEG00000002406)	MED17 (ENSODEG00000002353)	C11orf54 (ENSODEG00000002265)	TAF1D (ENSODEG00000002225)	SMCO4 (ENSODEG00000018804)	DEUP1 (ENSODEG00000002198)	SLC36A4 (ENSODEG00000002145)	MTNR1B (ENSODEG00000002125)	FAT3 (ENSODEG00000002606)	ENSODEG00000002534
Long-tailed chinchilla	MODERN SPECIES	121														ANKRD49 (ENSCLAG00000015054) #21	ENSCLAG00000013392	GPR83 (ENSCLAG00000013629) #22	ENSCLAG00000013252	IZUMO1R (ENSCLAG00000015110)	PANX1 (ENSCLAG00000014612)	HEPHL1 (ENSCLAG00000015721)	VSTM5 (ENSCLAG00000016423)	MED17 (ENSCLAG00000017202)	C11orf54 (ENSCLAG00000017272)	TAF1D (ENSCLAG00000014698)	CEP295 (ENSCLAG00000014683)	SMCO4 (ENSCLAG00000011932)	DEUP1 (ENSCLAG00000013832)	SLC36A4 (ENSCLAG00000015872)	MTNR1B (ENSCLAG00000012055)	ENSCLAG00000012677	FAT3 (ENSCLAG00000013669)
Guinea pig	MODERN SPECIES	40								KDM4D (ENSCPOG00000006256)	CWC15 (ENSCPOG00000006249)	AMOTL1 (ENSCPOG00000006241)	PIWIL4 (ENSCPOG00000000070)	FUT4 (ENSCPOG00000000069)	C11orf97 (ENSCPOG00000031459)	ANKRD49 (ENSCPOG00000030391) #21	MRE11 (ENSCPOG00000014563)	GPR83 (ENSCPOG00000039200) #22	IZUMO1R (ENSCPOG00000011657)	PANX1 (ENSCPOG00000039148)	HEPHL1 (ENSCPOG00000004098)	VSTM5 (ENSCPOG00000024881)	MED17 (ENSCPOG00000014149)	C11orf54 (ENSCPOG00000014146)	TAF1D (ENSCPOG00000002426)	CEP295 (ENSCPOG00000032006)	SMCO4 (ENSCPOG00000032286)	DEUP1 (ENSCPOG00000011016)	SLC36A4 (ENSCPOG00000036098)	MTNR1B (ENSCPOG00000010637)	ENSCPOG00000010626	CHORDC1 (ENSCPOG00000022614)	NAALAD2 (ENSCPOG00000038440)
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000018327	ENSHGLG00000017774	ENSHGLG00000046281	ENSHGLG00000043269	ENSHGLG00000032452	ENSHGLG00000035638	ENSHGLG00000049265	AMOTL1 (ENSHGLG00000010959)	ENSHGLG00000008729	PIWIL4 (ENSHGLG00000007416)	ENSHGLG00000005671	FUT4 (ENSHGLG00000005608)	ENSHGLG00000014136	ANKRD49 (ENSHGLG00000014039) #21	MRE11A (ENSHGLG00000015754)	GPR83 (ENSHGLG00000018711) #22	ENSHGLG00000019637	IZUMO1R (ENSHGLG00000008985)	ENSHGLG00000050118	PANX1 (ENSHGLG00000007682)	HEPHL1 (ENSHGLG00000005416)	ENSHGLG00000049421	ENSHGLG00000048701	VSTM5 (ENSHGLG00000007424)	MED17 (ENSHGLG00000006191)	TAF1D (ENSHGLG00000008795)	C11orf54 (ENSHGLG00000012597)	ENSHGLG00000014481	ENSHGLG00000020910	SLC36A4 (ENSHGLG00000044885)	ENSHGLG00000044735
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Pika	MODERN SPECIES	3956													ENSOPRG00000004245	ENSOPRG00000004229	MRE11 (ENSOPRG00000004190)	ENSOPRG00000004178 #22	ENSOPRG00000004158
Rabbit	MODERN SPECIES		SESN3 (ENSOCUG00000026640)	ENDOD1 (ENSOCUG00000014040)	ENSOCUG00000038702	ENSOCUG00000035381	ENSOCUG00000031183	ENSOCUG00000032220	ENSOCUG00000001631	CWC15 (ENSOCUG00000001629)	AMOTL1 (ENSOCUG00000001078)	PIWIL4 (ENSOCUG00000002860)	FUT4 (ENSOCUG00000014204)	C11orf97 (ENSOCUG00000034472)	ENSOCUG00000033194	ANKRD49 (ENSOCUG00000014912) #21	MRE11 (ENSOCUG00000014899)	GPR83 (ENSOCUG00000015502) #22	IZUMO1R (ENSOCUG00000013431)	PANX1 (ENSOCUG00000009473)	HEPHL1 (ENSOCUG00000009466)	ENSOCUG00000029520	VSTM5 (ENSOCUG00000026554)	MED17 (ENSOCUG00000012818)	C11orf54 (ENSOCUG00000012810)	ENSOCUG00000001096	CEP295 (ENSOCUG00000029678)	DEUP1 (ENSOCUG00000000199)	SLC36A4 (ENSOCUG00000000649)	MTNR1B (ENSOCUG00000008196)	FAT3 (ENSOCUG00000007427)	ENSOCUG00000023399	ENSOCUG00000014147
Primates	ANCESTRAL SPECIES		ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Mouse lemur	MODERN SPECIES	27	ENSMICG00000031831	MAML2 (ENSMICG00000009400)	MTMR2 (ENSMICG00000009395)	CEP57 (ENSMICG00000030559)	FAM76B (ENSMICG00000036906)	SESN3 (ENSMICG00000008178)	CWC15 (ENSMICG00000042790)	ENSMICG00000036230	AMOTL1 (ENSMICG00000001878)	ENSMICG00000041717	PIWIL4 (ENSMICG00000006375)	FUT4 (ENSMICG00000043071)	C11orf97 (ENSMICG00000043866)	ANKRD49 (ENSMICG00000013505) #21	ENSMICG00000027455	GPR83 (ENSMICG00000028902) #22	IZUMO1R (ENSMICG00000031112)	PANX1 (ENSMICG00000006408)	HEPHL1 (ENSMICG00000006401)	VSTM5 (ENSMICG00000045625)	ENSMICG00000014697	C11orf54 (ENSMICG00000028510)	TAF1D (ENSMICG00000034947)	CEP295 (ENSMICG00000017878)	SMCO4 (ENSMICG00000017877)	DEUP1 (ENSMICG00000017876)	SLC36A4 (ENSMICG00000033063)	MTNR1B (ENSMICG00000043189)	ENSMICG00000031389	ENSMICG00000015646	NAALAD2 (ENSMICG00000015630)
Lemuriformes_a	ANCESTRAL SPECIES	147	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152.a	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT00940000164415	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Greater bamboo lemur	MODERN SPECIES	414		CEP57 (ENSPSMG00000020838)	FAM76B (ENSPSMG00000020859)	SESN3 (ENSPSMG00000020961)	ENDOD1 (ENSPSMG00000021004)	ENSPSMG00000021012	ENSPSMG00000021017	CWC15 (ENSPSMG00000021030)	AMOTL1 (ENSPSMG00000021101)	PIWIL4 (ENSPSMG00000021185)	FUT4 (ENSPSMG00000021197)	C11orf97 (ENSPSMG00000021201)	ANKRD49 (ENSPSMG00000021206) #21	MRE11 (ENSPSMG00000021306)	ENSPSMG00000021347	GPR83 (ENSPSMG00000021362) #22	IZUMO1R (ENSPSMG00000021373)	PANX1 (ENSPSMG00000021384)	HEPHL1 (ENSPSMG00000021408)	ENSPSMG00000021414	ENSPSMG00000021429	VSTM5 (ENSPSMG00000021436)	MED17 (ENSPSMG00000021504)	C11orf54 (ENSPSMG00000021573)	TAF1D (ENSPSMG00000021588)	CEP295 (ENSPSMG00000021623)	SMCO4 (ENSPSMG00000021635)	DEUP1 (ENSPSMG00000021664)	SLC36A4 (ENSPSMG00000021672)	MTNR1B (ENSPSMG00000021687)	FAT3 (ENSPSMG00000021711)
Coquerels sifaka	MODERN SPECIES	801	JRKL (ENSPCOG00000004471)	MAML2 (ENSPCOG00000028333)	MTMR2 (ENSPCOG00000011333)	CEP57 (ENSPCOG00000019585)	FAM76B (ENSPCOG00000016586)	ENSPCOG00000017746	SESN3 (ENSPCOG00000017878)	ENDOD1 (ENSPCOG00000008619)	KDM4D (ENSPCOG00000024679)	CWC15 (ENSPCOG00000023913)	AMOTL1 (ENSPCOG00000024699)	PIWIL4 (ENSPCOG00000022264)	C11orf97 (ENSPCOG00000019915)	ANKRD49 (ENSPCOG00000022576) #21	MRE11 (ENSPCOG00000015583)	GPR83 (ENSPCOG00000022870) #22	IZUMO1R (ENSPCOG00000020918)	PANX1 (ENSPCOG00000014659)	ENSPCOG00000024084	HEPHL1 (ENSPCOG00000024694)	ENSPCOG00000024602	ENSPCOG00000016651	VSTM5 (ENSPCOG00000025355)	GATB (ENSPCOG00000021777)	FHIP1A (ENSPCOG00000023440)	ENSPCOG00000011844	ENSPCOG00000027945	ENSPCOG00000027843	SH3D19 (ENSPCOG00000027680)	ENSPCOG00000027849	ENSPCOG00000018069
Bushbaby	MODERN SPECIES	116	MMP10 (ENSOGAG00000010212)	MMP1 (ENSOGAG00000010215)	MMP3 (ENSOGAG00000010220)	MMP12 (ENSOGAG00000010221)	MMP13 (ENSOGAG00000010224)	DCUN1D5 (ENSOGAG00000010225)	DYNC2H1 (ENSOGAG00000033838)	KDM4D (ENSOGAG00000032607)	CWC15 (ENSOGAG00000001686)	AMOTL1 (ENSOGAG00000003989)	PIWIL4 (ENSOGAG00000012156)	FUT4 (ENSOGAG00000025107)	C11orf97 (ENSOGAG00000033264)	ANKRD49 (ENSOGAG00000012155) #21	MRE11 (ENSOGAG00000012154)	GPR83 (ENSOGAG00000002520) #22	IZUMO1R (ENSOGAG00000002522)	PANX1 (ENSOGAG00000015294)	HEPHL1 (ENSOGAG00000015952)	ENSOGAG00000034157	ENSOGAG00000033509	ENSOGAG00000026605	VSTM5 (ENSOGAG00000030661)	MED17 (ENSOGAG00000002525)	C11orf54 (ENSOGAG00000002523)	ENSOGAG00000002521	CEP295 (ENSOGAG00000002516)	SMCO4 (ENSOGAG00000016748)	DEUP1 (ENSOGAG00000007123)	SLC36A4 (ENSOGAG00000006967)	MTNR1B (ENSOGAG00000031018)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.k.b
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000159074	ENSGT00950000183168.A	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a	ENSGT00940000165078	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919 #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a	ENSGT01030000234598.b.a.b.k.b
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a	ENSGT00940000165078	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a	ENSGT01030000234598.b.a.b.k.b
Cebidae	ANCESTRAL SPECIES		ENSGT00940000159074	ENSGT00950000183168.A	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a	ENSGT00940000165078	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158.e.a	ENSGT00940000160158.e.b	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a	ENSGT01030000234598.b.a.b.k.b
Cebidae_a	ANCESTRAL SPECIES	73										ENSGT00940000160158.e.b	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a	ENSGT01030000234598.b.a.b.k.b
Capuchin	MODERN SPECIES	241									ENSCCAG00000036203	PIWIL4 (ENSCCAG00000017581)	ENSCCAG00000021211	FUT4 (ENSCCAG00000013593)	C11orf97 (ENSCCAG00000029425)	ANKRD49 (ENSCCAG00000027797) #21	MRE11 (ENSCCAG00000013972)	GPR83 (ENSCCAG00000028755) #22	IZUMO1R (ENSCCAG00000021617)	PANX1 (ENSCCAG00000007465)	HEPHL1 (ENSCCAG00000030082)	VSTM5 (ENSCCAG00000021584)	MED17 (ENSCCAG00000034414)	ENSCCAG00000025059	TAF1D (ENSCCAG00000018289)	CEP295 (ENSCCAG00000025065)	SMCO4 (ENSCCAG00000019420)	DEUP1 (ENSCCAG00000025548)	SLC36A4 (ENSCCAG00000029908)	FAT3 (ENSCCAG00000029618)	ENSCCAG00000019974
Bolivian squirrel monkey	MODERN SPECIES	188											PIWIL4 (ENSSBOG00000024534)	FUT4 (ENSSBOG00000020691)	C11orf97 (ENSSBOG00000017516)	ANKRD49 (ENSSBOG00000034549) #21	MRE11 (ENSSBOG00000016957)	GPR83 (ENSSBOG00000024347) #22	IZUMO1R (ENSSBOG00000021841)	PANX1 (ENSSBOG00000009703)	HEPHL1 (ENSSBOG00000034453)	VSTM5 (ENSSBOG00000025938)	MED17 (ENSSBOG00000003072)	C11orf54 (ENSSBOG00000032062)	TAF1D (ENSSBOG00000027735)	CEP295 (ENSSBOG00000019495)	SMCO4 (ENSSBOG00000011877)	DEUP1 (ENSSBOG00000026759)	SLC36A4 (ENSSBOG00000022344)	MTNR1B (ENSSBOG00000020942)	FAT3 (ENSSBOG00000020939)	ENSSBOG00000023416	NAALAD2 (ENSSBOG00000025125)
Marmoset	MODERN SPECIES	2	CEP57 (ENSCJAG00000004281)	FAM76B (ENSCJAG00000040122)	ENSCJAG00000004220	ENDOD1 (ENSCJAG00000039825)	ENSCJAG00000072491	KDM4D (ENSCJAG00000023319)	CWC15 (ENSCJAG00000040352)	AMOTL1 (ENSCJAG00000004124)	ENSCJAG00000070716	ENSCJAG00000065220	PIWIL4 (ENSCJAG00000004075)	FUT4 (ENSCJAG00000074794)	C11orf97 (ENSCJAG00000087393)	ANKRD49 (ENSCJAG00000083691) #21	MRE11 (ENSCJAG00000003984)	GPR83 (ENSCJAG00000003972) #22	IZUMO1R (ENSCJAG00000003960)	PANX1 (ENSCJAG00000003952)	HEPHL1 (ENSCJAG00000003906)	VSTM5 (ENSCJAG00000003861)	MED17 (ENSCJAG00000003839)	ENSCJAG00000084182	TAF1D (ENSCJAG00000003782)	CEP295 (ENSCJAG00000003748)	SMCO4 (ENSCJAG00000045722)	DEUP1 (ENSCJAG00000003734)	ENSCJAG00000085342	ENSCJAG00000072971	ENSCJAG00000054190	ENSCJAG00000072456	ENSCJAG00000077134
Mas night monkey	MODERN SPECIES	1013									AMOTL1 (ENSANAG00000033879)	PIWIL4 (ENSANAG00000031191)	FUT4 (ENSANAG00000011701)	C11orf97 (ENSANAG00000023746)	ANKRD49 (ENSANAG00000030055) #21	MRE11 (ENSANAG00000020274)	ENSANAG00000010232	GPR83 (ENSANAG00000021555) #22	IZUMO1R (ENSANAG00000030382)	PANX1 (ENSANAG00000030398)	HEPHL1 (ENSANAG00000030738)	VSTM5 (ENSANAG00000022799)	MED17 (ENSANAG00000032438)	C11orf54 (ENSANAG00000033486)	ENSANAG00000029536	TAF1D (ENSANAG00000022083)	CEP295 (ENSANAG00000032138)	ENSANAG00000029028	SMCO4 (ENSANAG00000015761)	DEUP1 (ENSANAG00000031473)	SLC36A4 (ENSANAG00000028156)	MTNR1B (ENSANAG00000021351)	FAT3 (ENSANAG00000026539)
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a.a
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00390000018018.sb.a.b	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Gorilla	MODERN SPECIES	2	CCDC82 (ENSGGOG00000016752)	MAML2 (ENSGGOG00000024120)	MTMR2 (ENSGGOG00000010339)	CEP57 (ENSGGOG00000013416)	FAM76B (ENSGGOG00000013409)	SESN3 (ENSGGOG00000004922)	ENDOD1 (ENSGGOG00000024775)	SRSF8 (ENSGGOG00000022679)	KDM4D (ENSGGOG00000010102)	CWC15 (ENSGGOG00000011926)	AMOTL1 (ENSGGOG00000001033)	PIWIL4 (ENSGGOG00000016276)	C11orf97 (ENSGGOG00000036219)	ANKRD49 (ENSGGOG00000008207) #21	MRE11 (ENSGGOG00000008192)	GPR83 (ENSGGOG00000007694) #22	IZUMO1R (ENSGGOG00000014840)	ENSGGOG00000037261	PANX (ENSGGOG00000005596)	HEPHL1 (ENSGGOG00000000624)	VSTM5 (ENSGGOG00000010409)	MED17 (ENSGGOG00000010401)	C11orf54 (ENSGGOG00000014705)	TAF1D (ENSGGOG00000028407)	CEP295 (ENSGGOG00000009396)	ENSGGOG00000008382	SMCO4 (ENSGGOG00000011166)	DEUP1 (ENSGGOG00000016147)	SLC36A4 (ENSGGOG00000028079)	MTNR1B (ENSGGOG00000013924)	FAT3 (ENSGGOG00000017065)
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00390000018018.sb.a.b	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a.a
Human	MODERN SPECIES	2	CEP57 (ENSG00000166037)	FAM76B (ENSG00000077458)	SESN3 (ENSG00000149212)	ENDOD1 (ENSG00000149218)	SRSF8 (ENSG00000263465)	KDM4F (ENSG00000255855)	KDM4E (ENSG00000235268)	KDM4D (ENSG00000186280)	CWC15 (ENSG00000150316)	AMOTL1 (ENSG00000166025)	FUT4 (ENSG00000196371)	PIWIL4 (ENSG00000134627)	C11orf97 (ENSG00000257057)	ANKRD49 (ENSG00000168876) #21	MRE11 (ENSG00000020922)	GPR83 (ENSG00000123901) #22	IZUMO1R (ENSG00000183560)	PANX1 (ENSG00000110218)	HEPHL1 (ENSG00000181333)	VSTM5 (ENSG00000214376)	MED17 (ENSG00000042429)	ENSG00000284057	C11orf54 (ENSG00000182919)	TAF1D (ENSG00000166012)	CEP295 (ENSG00000166004)	SMCO4 (ENSG00000166002)	DEUP1 (ENSG00000165325)	SLC36A4 (ENSG00000180773)	MTNR1B (ENSG00000134640)	FAT3 (ENSG00000165323)	CHORDC1 (ENSG00000110172)
Pan	ANCESTRAL SPECIES	1	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00390000018018.sb.a.b	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000008496.db.b	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341
Chimpanzee	MODERN SPECIES	2	FAM76B (ENSPTRG00000004193)	SESN3 (ENSPTRG00000004192)	ENDOD1 (ENSPTRG00000045007)	SRSF8 (ENSPTRG00000046909)	KDM4F (ENSPTRG00000044159)	ENSPTRG00000043643	KDM4E (ENSPTRG00000041826)	KDM4D (ENSPTRG00000004190)	CWC15 (ENSPTRG00000044239)	AMOTL1 (ENSPTRG00000004188)	PIWIL4 (ENSPTRG00000004187)	FUT4 (ENSPTRG00000028425)	C11H11orf97 (ENSPTRG00000047025)	ANKRD49 (ENSPTRG00000004185) #21	MRE11 (ENSPTRG00000004184)	GPR83 (ENSPTRG00000004183) #22	IZUMO1R (ENSPTRG00000004182)	ENSPTRG00000044783	PANX1 (ENSPTRG00000004181)	HEPHL1 (ENSPTRG00000004180)	VSTM5 (ENSPTRG00000052018)	MED17 (ENSPTRG00000004178)	C11H11orf54 (ENSPTRG00000004177)	TAF1D (ENSPTRG00000032462)	CEP295 (ENSPTRG00000004175)	ENSPTRG00000048746	ENSPTRG00000045360	SMCO4 (ENSPTRG00000046135)	DEUP1 (ENSPTRG00000004172)	ENSPTRG00000043610	ENSPTRG00000043441
Bonobo	MODERN SPECIES	2	MAML2 (ENSPPAG00000033930)	MTMR2 (ENSPPAG00000042525)	ENSPPAG00000024555	FAM76B (ENSPPAG00000033075)	SESN3 (ENSPPAG00000027541)	ENDOD1 (ENSPPAG00000036031)	ENSPPAG00000033651	KDM4E (ENSPPAG00000022047)	CWC15 (ENSPPAG00000033609)	AMOTL1 (ENSPPAG00000036699)	PIWIL4 (ENSPPAG00000031181)	FUT4 (ENSPPAG00000021481)	C11orf97 (ENSPPAG00000031103)	ANKRD49 (ENSPPAG00000037946) #21	MRE11 (ENSPPAG00000034731)	GPR83 (ENSPPAG00000039550) #22	IZUMO1R (ENSPPAG00000041423)	ENSPPAG00000026114	PANX1 (ENSPPAG00000040074)	HEPHL1 (ENSPPAG00000040046)	VSTM5 (ENSPPAG00000037419)	MED17 (ENSPPAG00000038273)	C11orf54 (ENSPPAG00000038203)	TAF1D (ENSPPAG00000034322)	CEP295 (ENSPPAG00000041025)	ENSPPAG00000000088	ENSPPAG00000037680	SMCO4 (ENSPPAG00000016913)	DEUP1 (ENSPPAG00000028857)	ENSPPAG00000043411	SLC36A4 (ENSPPAG00000038875)
Orangutan	MODERN SPECIES	2	MTMR2 (ENSPPYG00000003792)	CEP57 (ENSPPYG00000003790)	FAM76B (ENSPPYG00000003789)	SESN3 (ENSPPYG00000003788)	ENDOD1 (ENSPPYG00000040533)	SRSF8 (ENSPPYG00000035224)	KDM4F (ENSPPYG00000037461)	KDM4E (ENSPPYG00000041335)	CWC15 (ENSPPYG00000003785)	AMOTL1 (ENSPPYG00000003784)	PIWIL4 (ENSPPYG00000003783)	FUT4 (ENSPPYG00000037042)	ENSPPYG00000029760	ENSPPYG00000041706	MRE11 (ENSPPYG00000037469)	GPR83 (ENSPPYG00000041687) #22	IZUMO1R (ENSPPYG00000003780)	PANX1 (ENSPPYG00000003779)	HEPHL1 (ENSPPYG00000003778)	VSTM5 (ENSPPYG00000003777)	MED17 (ENSPPYG00000003776)	C11orf54 (ENSPPYG00000003775)	TAF1D (ENSPPYG00000003774)	CEP295 (ENSPPYG00000003773)	DEUP1 (ENSPPYG00000003770)	SLC36A4 (ENSPPYG00000003769)	MTNR1B (ENSPPYG00000003768)	FAT3 (ENSPPYG00000003767)	CHORDC1 (ENSPPYG00000003764)	NAALAD2 (ENSPPYG00000003763)	ENSPPYG00000036793
Gibbon	MODERN SPECIES	5	SESN3 (ENSNLEG00000007128)	ENSNLEG00000035714	ENDOD1 (ENSNLEG00000007127)	ENSNLEG00000031658	KDM4E (ENSNLEG00000007125)	ENSNLEG00000035015	KDM4D (ENSNLEG00000019232)	CWC15 (ENSNLEG00000031455)	AMOTL1 (ENSNLEG00000007120)	PIWIL4 (ENSNLEG00000007119)	ENSNLEG00000007118	C11orf97 (ENSNLEG00000007117)	ENSNLEG00000033459	ANKRD49 (ENSNLEG00000007115) #21	MRE11 (ENSNLEG00000007111)	GPR83 (ENSNLEG00000007109) #22	IZUMO1R (ENSNLEG00000007108)	ENSNLEG00000007107	PANX1 (ENSNLEG00000007105)	HEPHL1 (ENSNLEG00000007103)	VSTM5 (ENSNLEG00000007101)	MED17 (ENSNLEG00000007096)	TAF1D (ENSNLEG00000007094)	C11orf54 (ENSNLEG00000007095)	CEP295 (ENSNLEG00000007093)	ENSNLEG00000030226	SMCO4 (ENSNLEG00000027353)	DEUP1 (ENSNLEG00000007089)	SLC36A4 (ENSNLEG00000028135)	ENSNLEG00000027382	FAT3 (ENSNLEG00000007081)
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.s.a.a.a
Pig-tailed macaque	MODERN SPECIES	109	CEP57 (ENSMNEG00000031755)	FAM76B (ENSMNEG00000009651)	SESN3 (ENSMNEG00000030326)	ENSMNEG00000007007	ENDOD1 (ENSMNEG00000040186)	SRSF8 (ENSMNEG00000027570)	ENSMNEG00000035040	KDM4D (ENSMNEG00000026134)	CWC15 (ENSMNEG00000033968)	AMOTL1 (ENSMNEG00000044021)	PIWIL4 (ENSMNEG00000037456)	C11orf97 (ENSMNEG00000031514)	ENSMNEG00000020136	ANKRD49 (ENSMNEG00000034043) #21	MRE11 (ENSMNEG00000029815)	GPR83 (ENSMNEG00000043160) #22	IZUMO1R (ENSMNEG00000030482)	PANX1 (ENSMNEG00000035007)	HEPHL1 (ENSMNEG00000038689)	VSTM5 (ENSMNEG00000045447)	MED17 (ENSMNEG00000028879)	C11orf54 (ENSMNEG00000013934)	TAF1D (ENSMNEG00000040024)	CEP295 (ENSMNEG00000041554)	ENSMNEG00000042890	SMCO4 (ENSMNEG00000013588)	DEUP1 (ENSMNEG00000041961)	SLC36A4 (ENSMNEG00000044920)	MTNR1B (ENSMNEG00000031635)	FAT3 (ENSMNEG00000033595)	ENSMNEG00000032920
Cercopithecinae_b	ANCESTRAL SPECIES	21	ENSGT00950000183168.A	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000167275
Cercopithecinae_d	ANCESTRAL SPECIES	45	ENSGT00950000183168.A	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01100000263551.b.a.b	ENSGT00910000147855	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A.e	ENSGT00390000013073.a	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Sooty mangabey	MODERN SPECIES	216										AMOTL1 (ENSCATG00000035778)	PIWIL4 (ENSCATG00000030289)	C11orf97 (ENSCATG00000029479)	ENSCATG00000019568	ANKRD49 (ENSCATG00000032771) #21	MRE11 (ENSCATG00000040989)	GPR83 (ENSCATG00000009776) #22	PANX1 (ENSCATG00000002907)	HEPHL1 (ENSCATG00000041665)	VSTM5 (ENSCATG00000040111)	ENSCATG00000039624	MED17 (ENSCATG00000008395)	C11orf54 (ENSCATG00000035750)	TAF1D (ENSCATG00000042343)	CEP295 (ENSCATG00000038930)	ENSCATG00000020258	SMCO4 (ENSCATG00000020187)	DEUP1 (ENSCATG00000035569)	SLC36A4 (ENSCATG00000034032)	MTNR1B (ENSCATG00000033084)	ENSCATG00000037733
Drill	MODERN SPECIES	1152																GPR83 (ENSMLEG00000032323) #22	IZUMO1R (ENSMLEG00000033707)	PANX1 (ENSMLEG00000041168)	HEPHL1 (ENSMLEG00000038476)	VSTM5 (ENSMLEG00000027079)	ENSMLEG00000035673	MED17 (ENSMLEG00000027939)	C11orf54 (ENSMLEG00000035235)	TAF1D (ENSMLEG00000039639)	CEP295 (ENSMLEG00000033140)	ENSMLEG00000001837	SMCO4 (ENSMLEG00000022536)	DEUP1 (ENSMLEG00000037342)	SLC36A4 (ENSMLEG00000030119)	MTNR1B (ENSMLEG00000039776)	FAT3 (ENSMLEG00000038737)
Vervet Monkey	MODERN SPECIES		MAML2 (ENSCSAG00000003277)	MTMR2 (ENSCSAG00000003280)	CEP57 (ENSCSAG00000003283)	FAM76B (ENSCSAG00000003286)	SESN3 (ENSCSAG00000003288)	ENDOD1 (ENSCSAG00000003290)	KDM4E (ENSCSAG00000003292)	KDM4D (ENSCSAG00000003295)	CWC15 (ENSCSAG00000003299)	AMOTL1 (ENSCSAG00000003315)	PIWIL4 (ENSCSAG00000003360)	FUT4 (ENSCSAG00000000607)	C11orf97 (ENSCSAG00000003377)	ANKRD49 (ENSCSAG00000003379) #21	MRE11 (ENSCSAG00000003391)	GPR83 (ENSCSAG00000003397) #22	IZUMO1R (ENSCSAG00000003400)	PANX1 (ENSCSAG00000003406)	HEPHL1 (ENSCSAG00000003418)	VSTM5 (ENSCSAG00000003423)	MED17 (ENSCSAG00000003426)	C11orf54 (ENSCSAG00000003429)	TAF1D (ENSCSAG00000003431)	CEP295 (ENSCSAG00000003445)	ENSCSAG00000003461	SMCO4 (ENSCSAG00000000608)	DEUP1 (ENSCSAG00000003465)	SLC36A4 (ENSCSAG00000003469)	MTNR1B (ENSCSAG00000003473)	ENSCSAG00000003478	FAT3 (ENSCSAG00000003512)
Rhinopithecus	ANCESTRAL SPECIES	244	ENSGT00950000183168.A	ENSGT00910000147059	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000154883.g.a.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00910000147289	ENSGT00390000003919.e #21	ENSGT00390000017288.c	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j
Black snub-nosed monkey	MODERN SPECIES	695	SESN3 (ENSRBIG00000031220)	ENSRBIG00000027014	ENDOD1 (ENSRBIG00000025792)	ENSRBIG00000041837	ENSRBIG00000036245	ENSRBIG00000023300	KDM4E (ENSRBIG00000035068)	KDM4D (ENSRBIG00000029429)	CWC15 (ENSRBIG00000030781)	AMOTL1 (ENSRBIG00000043234)	PIWIL4 (ENSRBIG00000039745)	C11orf97 (ENSRBIG00000041747)	ENSRBIG00000026350	ANKRD49 (ENSRBIG00000043961) #21	MRE11 (ENSRBIG00000034693)	GPR83 (ENSRBIG00000043352) #22	IZUMO1R (ENSRBIG00000034661)
Golden snub-nosed monkey	MODERN SPECIES	893					KDM4E (ENSRROG00000031931)	KDM4D (ENSRROG00000015943)	CWC15 (ENSRROG00000037199)	AMOTL1 (ENSRROG00000044690)	PIWIL4 (ENSRROG00000015073)	FUT4 (ENSRROG00000001932)	C11orf97 (ENSRROG00000036633)	ENSRROG00000019465	ENSRROG00000024575	ANKRD49 (ENSRROG00000039528) #21	MRE11 (ENSRROG00000040618)	GPR83 (ENSRROG00000032634) #22	IZUMO1R (ENSRROG00000015988)
Tarsier	MODERN SPECIES	2490																GPR83 (ENSTSYG00000033623) #22
Atlantogenata	ANCESTRAL SPECIES	40	ENSGT00940000161513	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994
Afrotheria	ANCESTRAL SPECIES	43	ENSGT00940000161513	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994
Tenrec	MODERN SPECIES	2252														ENSETEG00000019702	MRE11 (ENSETEG00000019699)	GPR83 (ENSETEG00000019697) #22
Afrotheria_a	ANCESTRAL SPECIES	41	ENSGT00940000161513	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336.d #22	ENSGT00950000183144.A.j	ENSGT00940000153972.A	ENSGT00940000157994
Elephant	MODERN SPECIES	340	CCDC82 (ENSLAFG00000000217)	MAML2 (ENSLAFG00000001279)	MTMR2 (ENSLAFG00000008600)	CEP57 (ENSLAFG00000014511)	FAM76B (ENSLAFG00000014029)	SESN3 (ENSLAFG00000001537)	ENDOD1 (ENSLAFG00000010482)	ENSLAFG00000028723	KDM4D (ENSLAFG00000004460)	CWC15 (ENSLAFG00000004456)	AMOTL1 (ENSLAFG00000022009)	PIWIL4 (ENSLAFG00000008418)	FUT4 (ENSLAFG00000008415)	ANKRD49 (ENSLAFG00000003825) #21	MRE11 (ENSLAFG00000016373)	GPR83 (ENSLAFG00000016367) #22	IZUMO1R (ENSLAFG00000032394)	PANX1 (ENSLAFG00000011329)	HEPHL1 (ENSLAFG00000012664)	ENSLAFG00000030318	VSTM5 (ENSLAFG00000020501)	MED17 (ENSLAFG00000018587)	C11orf54 (ENSLAFG00000023184)	TAF1D (ENSLAFG00000023200)	ENSLAFG00000020915	SMCO4 (ENSLAFG00000006995)	DEUP1 (ENSLAFG00000015716)	SLC36A4 (ENSLAFG00000021548)	MTNR1B (ENSLAFG00000028028)	ENSLAFG00000025161	FAT3 (ENSLAFG00000017223)
Hyrax	MODERN SPECIES	1825																GPR83 (ENSPCAG00000016303) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000154336.d #22
Sloth	MODERN SPECIES	2039																GPR83 (ENSCHOG00000011073) #22
Platypus	MODERN SPECIES	12	ENSOANG00000010497	ENSOANG00000043963	MAML2 (ENSOANG00000010498)	MTMR2 (ENSOANG00000010499)	CEP57 (ENSOANG00000040575)	FAM76B (ENSOANG00000045559)	SESN3 (ENSOANG00000010503)	ENSOANG00000010505	ENSOANG00000010405	ENSOANG00000010404	AMOTL1 (ENSOANG00000010403)	ENSOANG00000038002	ENSOANG00000029843	ANKRD49 (ENSOANG00000010402) #21	MRE11 (ENSOANG00000010399)	GPR83 (ENSOANG00000040634) #22	PANX1 (ENSOANG00000011723)	HEPHL1 (ENSOANG00000011719)	VSTM5 (ENSOANG00000045898)	MED17 (ENSOANG00000011716)	C11orf54 (ENSOANG00000011715)	ENSOANG00000011713	SMCO4 (ENSOANG00000045400)	ENSOANG00000040404	ENSOANG00000011708	SLC36A4 (ENSOANG00000011707)	ENSOANG00000042265	FAT3 (ENSOANG00000011705)	CHORDC1 (ENSOANG00000043552)	NAALAD2 (ENSOANG00000004605)	FOLH1 (ENSOANG00000004606)
Sauria	ANCESTRAL SPECIES	2	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Archelosauria	ANCESTRAL SPECIES		ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Aves	ANCESTRAL SPECIES		ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Galloanserae	ANCESTRAL SPECIES	21								ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.b	ENSGT00940000166142	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT00940000164773	ENSGT00940000165703	ENSGT00390000002414	ENSGT01030000234582.f.a.a	ENSGT01030000234621.C.a.a.a	ENSGT00940000156576	ENSGT00950000182887.C.b.b
Anatidae	ANCESTRAL SPECIES	24							ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.b	ENSGT00940000166142	ENSGT00940000154633.ob	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT00940000164773	ENSGT00940000165703	ENSGT00390000002414	ENSGT01030000234582.f.a.a	ENSGT01030000234621.C.a.a.a	ENSGT00940000156576	ENSGT00950000182887.C.b.b
Duck	DUPLICATION
Duck	MODERN SPECIES	1									ZC4H2 (ENSAPLG00000022359)	ZC3H12B (ENSAPLG00000003874)	ENSAPLG00000003903	ENSAPLG00000004209	ENSAPLG00000026082	ENSAPLG00000024594	HEPH (ENSAPLG00000005347)	ENSAPLG00000006248 #22	ENSAPLG00000006354 #22	ENSAPLG00000006375	AR (ENSAPLG00000006566)	OPHN1 (ENSAPLG00000006763)	YIPF6 (ENSAPLG00000007545)	ENSAPLG00000016348	EFNB1 (ENSAPLG00000027844)	NALF2 (ENSAPLG00000008456)	EDA (ENSAPLG00000018744)	ENSAPLG00000018238	ENSAPLG00000008447	ENSAPLG00000008446	ENSAPLG00000008444	P2RY4 (ENSAPLG00000028428)	INPPL1 (ENSAPLG00000008443)
Duck	MODERN SPECIES	1								ZC4H2 (ENSAPLG00000022359)	ZC3H12B (ENSAPLG00000003874)	ENSAPLG00000003903	ENSAPLG00000004209	ENSAPLG00000026082	ENSAPLG00000024594	HEPH (ENSAPLG00000005347)	ENSAPLG00000006248 #22	ENSAPLG00000006354 #22	ENSAPLG00000006375	AR (ENSAPLG00000006566)	OPHN1 (ENSAPLG00000006763)	YIPF6 (ENSAPLG00000007545)	ENSAPLG00000016348	EFNB1 (ENSAPLG00000027844)	NALF2 (ENSAPLG00000008456)	EDA (ENSAPLG00000018744)	ENSAPLG00000018238	ENSAPLG00000008447	ENSAPLG00000008446	ENSAPLG00000008444	P2RY4 (ENSAPLG00000028428)	INPPL1 (ENSAPLG00000008443)	RAB41 (ENSAPLG00000008341)
Duck	MODERN SPECIES	1485																GPR83 (ENSAPLG00000001123) #22
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	4						ZC4H2 (ENSABRG00000021870)	ZC3H12B (ENSABRG00000000723)	LAS1L (ENSABRG00000000761)	ENSABRG00000000912	ENSABRG00000000946	ENSABRG00000000972	ENSABRG00000001035	ENSABRG00000001058	ENSABRG00000001157	ENSABRG00000001226	ENSABRG00000001298 #22	ENSABRG00000001323 #22	EDA2R (ENSABRG00000001348)	AR (ENSABRG00000001379)	OPHN1 (ENSABRG00000001423)	YIPF6 (ENSABRG00000001483)	STARD8 (ENSABRG00000001531) ##31	ENSABRG00000001554	EFNB1 (ENSABRG00000001665)	NALF2 (ENSABRG00000001686)	EDA (ENSABRG00000001715)	ENSABRG00000001756	ENSABRG00000001768	ENSABRG00000001797	ENSABRG00000001834	P2RY4 (ENSABRG00000001903)
Pink-footed goose	MODERN SPECIES	4					ZC4H2 (ENSABRG00000021870)	ZC3H12B (ENSABRG00000000723)	LAS1L (ENSABRG00000000761)	ENSABRG00000000912	ENSABRG00000000946	ENSABRG00000000972	ENSABRG00000001035	ENSABRG00000001058	ENSABRG00000001157	ENSABRG00000001226	ENSABRG00000001298 #22	ENSABRG00000001323 #22	EDA2R (ENSABRG00000001348)	AR (ENSABRG00000001379)	OPHN1 (ENSABRG00000001423)	YIPF6 (ENSABRG00000001483)	STARD8 (ENSABRG00000001531) ##31	ENSABRG00000001554	EFNB1 (ENSABRG00000001665)	NALF2 (ENSABRG00000001686)	EDA (ENSABRG00000001715)	ENSABRG00000001756	ENSABRG00000001768	ENSABRG00000001797	ENSABRG00000001834	P2RY4 (ENSABRG00000001903)	ENSABRG00000002034
Pink-footed goose	MODERN SPECIES	69			CCDC82 (ENSABRG00000000801)	MAML2 (ENSABRG00000000748)	MTMR2 (ENSABRG00000022819)	CEP57 (ENSABRG00000022815)	FAM76B (ENSABRG00000022812)	SESN3 (ENSABRG00000022806)	ENDOD1 (ENSABRG00000022805)	CWC15 (ENSABRG00000022800)	AMOTL1 (ENSABRG00000022773)	FUT4 (ENSABRG00000022765)	C11orf97 (ENSABRG00000022763)	ANKRD49 (ENSABRG00000022759) #21	MRE11 (ENSABRG00000022756)	GPR83 (ENSABRG00000022752) #22	PANX1 (ENSABRG00000022749)	ENSABRG00000022746	ENSABRG00000022745	ENSABRG00000022743	ENSABRG00000022742	VSTM5 (ENSABRG00000022741)	MED17 (ENSABRG00000022726)	C11orf54 (ENSABRG00000022718)	TAF1D (ENSABRG00000022716)	ENSABRG00000022699	SMCO4 (ENSABRG00000022697)	DEUP1 (ENSABRG00000022695)	SLC36A4 (ENSABRG00000022693)	MTNR1B (ENSABRG00000022688)	FAT3 (ENSABRG00000022682)
Phasianidae	ANCESTRAL SPECIES	2								ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.b	ENSGT00940000166142	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000160128	ENSGT00940000161362	ENSGT00730000111220	ENSGT00940000164773	ENSGT00940000165703	ENSGT00390000002414	ENSGT01030000234582.f.a.a	ENSGT01030000234621.C.a.a.a	ENSGT00940000156576	ENSGT00950000182887.C.b.b
Phasianidae_b	ANCESTRAL SPECIES	27								ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.b	ENSGT00940000166142	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517	ENSGT00940000154336 #22	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000158241	ENSGT00390000012574	ENSGT00420000029769.b	ENSGT00940000156950	ENSGT00940000156344	ENSGT00940000158645	ENSGT00940000159253	ENSGT00390000008593.a	ENSGT00940000160549	ENSGT00940000157483
Chicken	DUPLICATION
Chicken	MODERN SPECIES	33							ZC4H2 (ENSGALG00010015040)	ZC3H12B (ENSGALG00010015044)	LAS1L (ENSGALG00010015057)	MSN (ENSGALG00010015091)	ENSGALG00010015186	ENSGALG00010015370	VSIG4 (ENSGALG00010016807)	HSF3 (ENSGALG00010016823)	HEPH (ENSGALG00010016836)	GPR83L (ENSGALG00010016850) #22	ENSGALG00010016853 #22	EDA2R (ENSGALG00010016872)	AR (ENSGALG00010016880)	OPHN1 (ENSGALG00010014367)	YIPF6 (ENSGALG00010014407)	STARD8 (ENSGALG00010015834) ##31	RXFP2 (ENSGALG00010015843)	EFNB1 (ENSGALG00010014340)	FAM155B (ENSGALG00010017551)	EDA (ENSGALG00010017553)	ENSGALG00010017557	WNT11B (ENSGALG00010017584)	ENSGALG00010017598	AWAT1 (ENSGALG00010017632)	P2RY4 (ENSGALG00010017640)
Chicken	MODERN SPECIES	33						ZC4H2 (ENSGALG00010015040)	ZC3H12B (ENSGALG00010015044)	LAS1L (ENSGALG00010015057)	MSN (ENSGALG00010015091)	ENSGALG00010015186	ENSGALG00010015370	VSIG4 (ENSGALG00010016807)	HSF3 (ENSGALG00010016823)	HEPH (ENSGALG00010016836)	GPR83L (ENSGALG00010016850) #22	ENSGALG00010016853 #22	EDA2R (ENSGALG00010016872)	AR (ENSGALG00010016880)	OPHN1 (ENSGALG00010014367)	YIPF6 (ENSGALG00010014407)	STARD8 (ENSGALG00010015834) ##31	RXFP2 (ENSGALG00010015843)	EFNB1 (ENSGALG00010014340)	FAM155B (ENSGALG00010017551)	EDA (ENSGALG00010017553)	ENSGALG00010017557	WNT11B (ENSGALG00010017584)	ENSGALG00010017598	AWAT1 (ENSGALG00010017632)	P2RY4 (ENSGALG00010017640)	ENSGALG00010017668
Chicken	MODERN SPECIES		CNTN5 (ENSGALG00010008242)	CCDC82 (ENSGALG00010008258)	MAML2 (ENSGALG00010008267)	MTMR2 (ENSGALG00010008289)	ENSGALG00010008302	CEP57 (ENSGALG00010008317)	FAM76B (ENSGALG00010008339)	SESN3 (ENSGALG00010008386)	ENDOD1 (ENSGALG00010008395)	CWC15 (ENSGALG00010008409)	AMOTL1 (ENSGALG00010008453)	FUT4 (ENSGALG00010009149)	C11orf97 (ENSGALG00010008466)	ANKRD49 (ENSGALG00010008492) #21	MRE11 (ENSGALG00010008516)	GPR83 (ENSGALG00010008529) #22	PANX1 (ENSGALG00010008580)	ENSGALG00010009160	HEPHL1 (ENSGALG00010008641)	TM4SF1a (ENSGALG00010008664)	ENSGALG00010008694	VSTM5 (ENSGALG00010008739)	MED17 (ENSGALG00010008775)	C11orf54 (ENSGALG00010008793)	ENSGALG00010008821	ENSGALG00010008837	SMCO4 (ENSGALG00010008974)	DEUP1 (ENSGALG00010009012)	SLC36A4 (ENSGALG00010009039)	MTNR1B (ENSGALG00010009056)	FAT3 (ENSGALG00010007920)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	29	P2RY4 (ENSMGAG00000015789)	ENSMGAG00000001235	ENSMGAG00000001243	ENSMGAG00000001244	ENSMGAG00000001229	ENSMGAG00000001204	ENSMGAG00000001145 ##31	ENSMGAG00000000885	ENSMGAG00000019736 ##31	ENSMGAG00000001183	ENSMGAG00000010876	ENSMGAG00000010900	ENSMGAG00000000864 #22	ENSMGAG00000000873	ENSMGAG00000000822	ENSMGAG00000017054 #22	ENSMGAG00000000814	ENSMGAG00000000809	ENSMGAG00000000806	ENSMGAG00000000800	ENSMGAG00000000771	ENSMGAG00000000760	ENSMGAG00000000759	ENSMGAG00000000753	ENSMGAG00000014077	ENSMGAG00000021827	ENSMGAG00000006499	ENSMGAG00000002661	ENSMGAG00000002666	WDR44 (ENSMGAG00000002717)	DOCK11 (ENSMGAG00000002797)
Turkey	MODERN SPECIES	29	ARR3 (ENSMGAG00000001385)	ENSMGAG00000001281	ENSMGAG00000001296	P2RY4 (ENSMGAG00000015789)	ENSMGAG00000001235	ENSMGAG00000001243	ENSMGAG00000001244	ENSMGAG00000001229	ENSMGAG00000001204	ENSMGAG00000001145 ##31	ENSMGAG00000000885	ENSMGAG00000019736 ##31	ENSMGAG00000001183	ENSMGAG00000010876	ENSMGAG00000010900	ENSMGAG00000000864 #22	ENSMGAG00000000873	ENSMGAG00000000822	ENSMGAG00000017054 #22	ENSMGAG00000000814	ENSMGAG00000000809	ENSMGAG00000000806	ENSMGAG00000000800	ENSMGAG00000000771	ENSMGAG00000000760	ENSMGAG00000000759	ENSMGAG00000000753	ENSMGAG00000014077	ENSMGAG00000021827	ENSMGAG00000006499	ENSMGAG00000002661
Turkey	MODERN SPECIES		FAM76B (ENSMGAG00000015189)	SESN3 (ENSMGAG00000015191)	ENDOD1 (ENSMGAG00000020832)	CWC15 (ENSMGAG00000015193)	SMCO4 (ENSMGAG00000021417)	ENSMGAG00000015214	C11orf54 (ENSMGAG00000015205)	ENSMGAG00000015206	ENSMGAG00000015202	ENSMGAG00000015203	ENSMGAG00000015204	ENSMGAG00000015200	ENSMGAG00000015201	ANKRD49 (ENSMGAG00000015196) #21	ENSMGAG00000015197	GPR83 (ENSMGAG00000015198) #22	PANX1 (ENSMGAG00000015199)	C11orf97 (ENSMGAG00000017907)	ENSMGAG00000015195	ENSMGAG00000017245	ENSMGAG00000015215	ENSMGAG00000019758	ENSMGAG00000021073	ENSMGAG00000015623	ENSMGAG00000015273	ENSMGAG00000015272	ENSMGAG00000015269	ENSMGAG00000015268	ENSMGAG00000015267	ENSMGAG00000015318	ENSMGAG00000015265
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	22					ZC4H2 (ENSCJPG00005002865)	ZC3H12B (ENSCJPG00005002914)	LAS1L (ENSCJPG00005002926)	ENSCJPG00005002935	ENSCJPG00005002939	ENSCJPG00005002949	ENSCJPG00005002956	ENSCJPG00005002966	VSIG4 (ENSCJPG00005002969)	ENSCJPG00005002973	ENSCJPG00005002979	ENSCJPG00005002985 #22	EDA2R (ENSCJPG00005002988)	AR (ENSCJPG00005002994)	OPHN1 (ENSCJPG00005003007)	YIPF6 (ENSCJPG00005003021)	STARD8 (ENSCJPG00005003026) ##31	ENSCJPG00005003031	EFNB1 (ENSCJPG00005003036)	ENSCJPG00005003039	EDA (ENSCJPG00005003040)	ENSCJPG00005003042	ENSCJPG00005003044	ENSCJPG00005003049	ENSCJPG00005003051	P2RY4 (ENSCJPG00005003053)	INPPL1 (ENSCJPG00005003059)
Japanese quail	MODERN SPECIES		ENSCJPG00005003843	CCDC82 (ENSCJPG00005003846)	ENSCJPG00005003847	ENSCJPG00005003848	MTMR2 (ENSCJPG00005003852)	CEP57 (ENSCJPG00005003853)	FAM76B (ENSCJPG00005003854)	SESN3 (ENSCJPG00005003931)	ENDOD1 (ENSCJPG00005003932)	CWC15 (ENSCJPG00005003933)	AMOTL1 (ENSCJPG00005003951)	FUT4 (ENSCJPG00005003953)	C11orf97 (ENSCJPG00005003956)	ANKRD49 (ENSCJPG00005003958) #21	MRE11 (ENSCJPG00005003960)	GPR83 (ENSCJPG00005003962) #22	PANX1 (ENSCJPG00005003965)	ENSCJPG00005003967	ENSCJPG00005003971	ENSCJPG00005003973	ENSCJPG00005003974	VSTM5 (ENSCJPG00005003975)	MED17 (ENSCJPG00005003976)	C11orf54 (ENSCJPG00005003977)	ENSCJPG00005003982	ENSCJPG00005003994	DEUP1 (ENSCJPG00005004002)	ENSCJPG00005004027	MTNR1B (ENSCJPG00005004035)	ENSCJPG00005004037	FAT3 (ENSCJPG00005004054)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	13							ZC4H2 (ENSACCG00020011125)	ZC3H12B (ENSACCG00020011131)	LAS1L (ENSACCG00020011144)	ENSACCG00020011158	ENSACCG00020011166	ENSACCG00020011183	ENSACCG00020011200	ENSACCG00020011207	HEPH (ENSACCG00020011229)	ENSACCG00020011255 #22	ENSACCG00020011269 #22	EDA2R (ENSACCG00020011280)	AR (ENSACCG00020011304)	OPHN1 (ENSACCG00020011327)	YIPF6 (ENSACCG00020011353)	STARD8 (ENSACCG00020011375) ##31	ENSACCG00020011410	ENSACCG00020011434	EFNB1 (ENSACCG00020011441)	NALF2 (ENSACCG00020011463)	EDA (ENSACCG00020011486)	ENSACCG00020011513	ENSACCG00020011545	ENSACCG00020011574	ENSACCG00020011599
Golden eagle	MODERN SPECIES	13						ZC4H2 (ENSACCG00020011125)	ZC3H12B (ENSACCG00020011131)	LAS1L (ENSACCG00020011144)	ENSACCG00020011158	ENSACCG00020011166	ENSACCG00020011183	ENSACCG00020011200	ENSACCG00020011207	HEPH (ENSACCG00020011229)	ENSACCG00020011255 #22	ENSACCG00020011269 #22	EDA2R (ENSACCG00020011280)	AR (ENSACCG00020011304)	OPHN1 (ENSACCG00020011327)	YIPF6 (ENSACCG00020011353)	STARD8 (ENSACCG00020011375) ##31	ENSACCG00020011410	ENSACCG00020011434	EFNB1 (ENSACCG00020011441)	NALF2 (ENSACCG00020011463)	EDA (ENSACCG00020011486)	ENSACCG00020011513	ENSACCG00020011545	ENSACCG00020011574	ENSACCG00020011599	P2RY4 (ENSACCG00020011625)
Golden eagle	MODERN SPECIES	10	ARHGAP42 (ENSACCG00020008871)	CNTN5 (ENSACCG00020008929)	CCDC82 (ENSACCG00020008966)	MAML2 (ENSACCG00020008985)	MTMR2 (ENSACCG00020009006)	CEP57 (ENSACCG00020009041)	FAM76B (ENSACCG00020009069)	SESN3 (ENSACCG00020009081)	ENDOD1 (ENSACCG00020009097)	CWC15 (ENSACCG00020009107)	AMOTL1 (ENSACCG00020009124)	FUT4 (ENSACCG00020009150)	C11orf97 (ENSACCG00020009174)	ANKRD49 (ENSACCG00020009196) #21	MRE11 (ENSACCG00020009228)	GPR83 (ENSACCG00020009257) #22	PANX1 (ENSACCG00020009270)	HEPHL1 (ENSACCG00020009476)	ENSACCG00020009612	ENSACCG00020009626	VSTM5 (ENSACCG00020007981)	MED17 (ENSACCG00020007997)	C11orf54 (ENSACCG00020008009)	TAF1D (ENSACCG00020008021)	ENSACCG00020008067	SMCO4 (ENSACCG00020008104)	DEUP1 (ENSACCG00020008117)	ENSACCG00020008136	ENSACCG00020008145	SLC36A4 (ENSACCG00020008156)	MTNR1B (ENSACCG00020008161)
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	1	MPP1 (ENSSHBG00005019647)	F8 (ENSSHBG00005019435)	FUNDC2 (ENSSHBG00005019374)	ENSSHBG00005019366	BRCC3 (ENSSHBG00005019360)	ZC4H2 (ENSSHBG00005019354)	ZC3H12B (ENSSHBG00005019347)	LAS1L (ENSSHBG00005019342)	ENSSHBG00005019340	ENSSHBG00005019333	ENSSHBG00005019330	ENSSHBG00005019326	ENSSHBG00005019308	ENSSHBG00005019299	ENSSHBG00005016141	ENSSHBG00005015992 #22	ENSSHBG00005015980 #22	AR (ENSSHBG00005015965)	OPHN1 (ENSSHBG00005015949)	YIPF6 (ENSSHBG00005015941)	STARD8 (ENSSHBG00005015931) ##31	EFNB1 (ENSSHBG00005015916)	NALF2 (ENSSHBG00005015915)	EDA (ENSSHBG00005015912)	ENSSHBG00005015908	ENSSHBG00005015906	ENSSHBG00005015902	ENSSHBG00005015898	P2RY4 (ENSSHBG00005015894)	ENSSHBG00005015891	ARR3 (ENSSHBG00005015883)
Kakapo	MODERN SPECIES	1	F8 (ENSSHBG00005019435)	FUNDC2 (ENSSHBG00005019374)	ENSSHBG00005019366	BRCC3 (ENSSHBG00005019360)	ZC4H2 (ENSSHBG00005019354)	ZC3H12B (ENSSHBG00005019347)	LAS1L (ENSSHBG00005019342)	ENSSHBG00005019340	ENSSHBG00005019333	ENSSHBG00005019330	ENSSHBG00005019326	ENSSHBG00005019308	ENSSHBG00005019299	ENSSHBG00005016141	ENSSHBG00005015992 #22	ENSSHBG00005015980 #22	AR (ENSSHBG00005015965)	OPHN1 (ENSSHBG00005015949)	YIPF6 (ENSSHBG00005015941)	STARD8 (ENSSHBG00005015931) ##31	EFNB1 (ENSSHBG00005015916)	NALF2 (ENSSHBG00005015915)	EDA (ENSSHBG00005015912)	ENSSHBG00005015908	ENSSHBG00005015906	ENSSHBG00005015902	ENSSHBG00005015898	P2RY4 (ENSSHBG00005015894)	ENSSHBG00005015891	ARR3 (ENSSHBG00005015883)	RAB41 (ENSSHBG00005015872)
Kakapo	MODERN SPECIES	11	ARHGAP42 (ENSSHBG00005003000)	CNTN5 (ENSSHBG00005003033)	CCDC82 (ENSSHBG00005003090)	MAML2 (ENSSHBG00005003105)	MTMR2 (ENSSHBG00005003123)	CEP57 (ENSSHBG00005003137)	FAM76B (ENSSHBG00005003148)	SESN3 (ENSSHBG00005003167)	ENDOD1 (ENSSHBG00005003178)	CWC15 (ENSSHBG00005003187)	ENSSHBG00005003237	FUT4 (ENSSHBG00005003309)	C11orf97 (ENSSHBG00005003322)	ANKRD49 (ENSSHBG00005003336) #21	MRE11 (ENSSHBG00005003350)	GPR83 (ENSSHBG00005003385) #22	PANX1 (ENSSHBG00005003411)	HEPHL1 (ENSSHBG00005003506)	ENSSHBG00005003748	ENSSHBG00005003769	VSTM5 (ENSSHBG00005003780)	MED17 (ENSSHBG00005003790)	TAF1D (ENSSHBG00005003808)	ENSSHBG00005003864	ENSSHBG00005003916	ENSSHBG00005003927	SLC36A4 (ENSSHBG00005003986)	MTNR1B (ENSSHBG00005004082)	FAT3 (ENSSHBG00005004336)	CHORDC1 (ENSSHBG00005005198)	ENSSHBG00005005219
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000163982.sd.b	ENSGT00940000162341	ENSGT00940000154981
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000163982.sd.b	ENSGT00940000162341	ENSGT00940000154981
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	23	INTS6L (ENSFALG00000004314)	MMGT1 (ENSFALG00000004311)	ENSFALG00000023823	ENSFALG00000004309	FHL1 (ENSFALG00000004308)	ENSFALG00000004301	ZC4H2 (ENSFALG00000023165)	ZC3H12B (ENSFALG00000004293)	LAS1L (ENSFALG00000004287)	ENSFALG00000004282	ENSFALG00000025002	ENSFALG00000004280	ENSFALG00000026191	ENSFALG00000004260	HEPH (ENSFALG00000004249)	ENSFALG00000004244 #22	ENSFALG00000004238 #22	EDA2R (ENSFALG00000004231)	AR (ENSFALG00000004225)	OPHN1 (ENSFALG00000004217)	YIPF6 (ENSFALG00000024972)	STARD8 (ENSFALG00000004206) ##31	ENSFALG00000004198	ENSFALG00000027463	ENSFALG00000004096	ENSFALG00000004194	EDA (ENSFALG00000004193)	ENSFALG00000027804	ENSFALG00000027699	ENSFALG00000004180	ENSFALG00000004170
Flycatcher	MODERN SPECIES	23	MMGT1 (ENSFALG00000004311)	ENSFALG00000023823	ENSFALG00000004309	FHL1 (ENSFALG00000004308)	ENSFALG00000004301	ZC4H2 (ENSFALG00000023165)	ZC3H12B (ENSFALG00000004293)	LAS1L (ENSFALG00000004287)	ENSFALG00000004282	ENSFALG00000025002	ENSFALG00000004280	ENSFALG00000026191	ENSFALG00000004260	HEPH (ENSFALG00000004249)	ENSFALG00000004244 #22	ENSFALG00000004238 #22	EDA2R (ENSFALG00000004231)	AR (ENSFALG00000004225)	OPHN1 (ENSFALG00000004217)	YIPF6 (ENSFALG00000024972)	STARD8 (ENSFALG00000004206) ##31	ENSFALG00000004198	ENSFALG00000027463	ENSFALG00000004096	ENSFALG00000004194	EDA (ENSFALG00000004193)	ENSFALG00000027804	ENSFALG00000027699	ENSFALG00000004180	ENSFALG00000004170	P2RY4 (ENSFALG00000014960)
Flycatcher	MODERN SPECIES		ARHGAP42 (ENSFALG00000000353)	CNTN5 (ENSFALG00000000348)	CCDC82 (ENSFALG00000024899)	MAML2 (ENSFALG00000000339)	MTMR2 (ENSFALG00000000338)	CEP57 (ENSFALG00000000337)	FAM76B (ENSFALG00000000336)	SESN3 (ENSFALG00000000333)	ENDOD1 (ENSFALG00000000330)	CWC15 (ENSFALG00000027709)	AMOTL1 (ENSFALG00000000320)	FUT4 (ENSFALG00000014231)	ENSFALG00000020356	ANKRD49 (ENSFALG00000027188) #21	MRE11 (ENSFALG00000000315)	GPR83 (ENSFALG00000000313) #22	PANX1 (ENSFALG00000000311)	HEPHL1 (ENSFALG00000000307)	ENSFALG00000025897	ENSFALG00000000300	VSTM5 (ENSFALG00000028517)	MED17 (ENSFALG00000000295)	C11orf54 (ENSFALG00000000294)	TAF1D (ENSFALG00000000293)	ENSFALG00000000292	SMCO4 (ENSFALG00000014226)	DEUP1 (ENSFALG00000000285)	SLC36A4 (ENSFALG00000000281)	ENSFALG00000026085	ENSFALG00000000280	MTNR1B (ENSFALG00000000278)
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000163982.sd.b	ENSGT00940000162341	ENSGT00940000154981
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000163982.sd.b	ENSGT00940000162341	ENSGT00940000154981
Common canary	DUPLICATION
Common canary	MODERN SPECIES	13	FRMD7 (ENSSCAG00000017364)	RAP2C (ENSSCAG00000017365)	MBNL3 (ENSSCAG00000017366)	HS6ST2 (ENSSCAG00000017367)	GPC4 (ENSSCAG00000017368)	GPC3 (ENSSCAG00000017369)	ZC4H2 (ENSSCAG00000017371)	ZC3H12B (ENSSCAG00000017372)	LAS1L (ENSSCAG00000017373)	ENSSCAG00000017374	ENSSCAG00000017375	ENSSCAG00000017376	VSIG4 (ENSSCAG00000017379)	ENSSCAG00000017380	HEPH (ENSSCAG00000017381)	ENSSCAG00000000122 #22	ENSSCAG00000000145 #22	EDA2R (ENSSCAG00000000180)	AR (ENSSCAG00000000232)	OPHN1 (ENSSCAG00000000370)	YIPF6 (ENSSCAG00000000692)	STARD8 (ENSSCAG00000000705) ##31	EFNB1 (ENSSCAG00000000734)	NALF2 (ENSSCAG00000000762)	ENSSCAG00000000767	EDA (ENSSCAG00000000775)	ENSSCAG00000000784	ENSSCAG00000000794	ENSSCAG00000000805	ENSSCAG00000000817	P2RY4 (ENSSCAG00000000825)
Common canary	MODERN SPECIES	13	RAP2C (ENSSCAG00000017365)	MBNL3 (ENSSCAG00000017366)	HS6ST2 (ENSSCAG00000017367)	GPC4 (ENSSCAG00000017368)	GPC3 (ENSSCAG00000017369)	ZC4H2 (ENSSCAG00000017371)	ZC3H12B (ENSSCAG00000017372)	LAS1L (ENSSCAG00000017373)	ENSSCAG00000017374	ENSSCAG00000017375	ENSSCAG00000017376	VSIG4 (ENSSCAG00000017379)	ENSSCAG00000017380	HEPH (ENSSCAG00000017381)	ENSSCAG00000000122 #22	ENSSCAG00000000145 #22	EDA2R (ENSSCAG00000000180)	AR (ENSSCAG00000000232)	OPHN1 (ENSSCAG00000000370)	YIPF6 (ENSSCAG00000000692)	STARD8 (ENSSCAG00000000705) ##31	EFNB1 (ENSSCAG00000000734)	NALF2 (ENSSCAG00000000762)	ENSSCAG00000000767	EDA (ENSSCAG00000000775)	ENSSCAG00000000784	ENSSCAG00000000794	ENSSCAG00000000805	ENSSCAG00000000817	P2RY4 (ENSSCAG00000000825)	ENSSCAG00000000833
Common canary	MODERN SPECIES	4	ENSSCAG00000003880	CNTN5 (ENSSCAG00000003870)	CCDC82 (ENSSCAG00000003858)	ENSSCAG00000003855	MTMR2 (ENSSCAG00000003835)	CEP57 (ENSSCAG00000003826)	FAM76B (ENSSCAG00000003820)	SESN3 (ENSSCAG00000003813)	ENDOD1 (ENSSCAG00000003802)	CWC15 (ENSSCAG00000003798)	AMOTL1 (ENSSCAG00000003677)	FUT4 (ENSSCAG00000003662)	ENSSCAG00000003659	ANKRD49 (ENSSCAG00000003657) #21	MRE11 (ENSSCAG00000003648)	GPR83 (ENSSCAG00000003647) #22	PANX1 (ENSSCAG00000003636)	HEPHL1 (ENSSCAG00000003621)	ENSSCAG00000003613	ENSSCAG00000003611	VSTM5 (ENSSCAG00000003607)	MED17 (ENSSCAG00000003601)	C11orf54 (ENSSCAG00000003598)	TAF1D (ENSSCAG00000003597)	ENSSCAG00000003573	SMCO4 (ENSSCAG00000003568)	DEUP1 (ENSSCAG00000003544)	SLC36A4 (ENSSCAG00000003536)	MTNR1B (ENSSCAG00000003497)	FAT3 (ENSSCAG00000003312)	CHORDC1 (ENSSCAG00000003291)
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	26	INTS6L (ENSTGUG00000002901)	MMGT1 (ENSTGUG00000022719)	SLC9A6 (ENSTGUG00000002865)	FHL1 (ENSTGUG00000002863)	MAP7D3 (ENSTGUG00000002861)	ZC4H2 (ENSTGUG00000029285)	ZC3H12B (ENSTGUG00000002846)	LAS1L (ENSTGUG00000002844)	ENSTGUG00000002826	ENSTGUG00000022987	ENSTGUG00000002818	ENSTGUG00000002814	ENSTGUG00000002816	ENSTGUG00000002805	HEPH (ENSTGUG00000002793)	ENSTGUG00000021575 #22	ENSTGUG00000002791 #22	EDA2R (ENSTGUG00000027444)	AR (ENSTGUG00000002760)	OPHN1 (ENSTGUG00000002739)	YIPF6 (ENSTGUG00000023575)	STARD8 (ENSTGUG00000002706) ##31	ENSTGUG00000023604	EFNB1 (ENSTGUG00000024663)	ENSTGUG00000002696	NALF2 (ENSTGUG00000021447)	EDA (ENSTGUG00000002685)	ENSTGUG00000002683	ENSTGUG00000002678	ENSTGUG00000002673	ENSTGUG00000002669
Zebra finch	MODERN SPECIES	26	MMGT1 (ENSTGUG00000022719)	SLC9A6 (ENSTGUG00000002865)	FHL1 (ENSTGUG00000002863)	MAP7D3 (ENSTGUG00000002861)	ZC4H2 (ENSTGUG00000029285)	ZC3H12B (ENSTGUG00000002846)	LAS1L (ENSTGUG00000002844)	ENSTGUG00000002826	ENSTGUG00000022987	ENSTGUG00000002818	ENSTGUG00000002814	ENSTGUG00000002816	ENSTGUG00000002805	HEPH (ENSTGUG00000002793)	ENSTGUG00000021575 #22	ENSTGUG00000002791 #22	EDA2R (ENSTGUG00000027444)	AR (ENSTGUG00000002760)	OPHN1 (ENSTGUG00000002739)	YIPF6 (ENSTGUG00000023575)	STARD8 (ENSTGUG00000002706) ##31	ENSTGUG00000023604	EFNB1 (ENSTGUG00000024663)	ENSTGUG00000002696	NALF2 (ENSTGUG00000021447)	EDA (ENSTGUG00000002685)	ENSTGUG00000002683	ENSTGUG00000002678	ENSTGUG00000002673	ENSTGUG00000002669	P2RY4 (ENSTGUG00000002666)
Zebra finch	MODERN SPECIES		ARHGAP42 (ENSTGUG00000012788)	CNTN5 (ENSTGUG00000012792)	CCDC82 (ENSTGUG00000012800)	MAML2 (ENSTGUG00000012803)	MTMR2 (ENSTGUG00000012806)	CEP57 (ENSTGUG00000024409)	FAM76B (ENSTGUG00000012811)	SESN3 (ENSTGUG00000024822)	ENDOD1 (ENSTGUG00000026431)	CWC15 (ENSTGUG00000029544)	AMOTL1 (ENSTGUG00000012818)	FUT4 (ENSTGUG00000027501)	C11orf97 (ENSTGUG00000022175)	ANKRD49 (ENSTGUG00000012823) #21	MRE11 (ENSTGUG00000012824)	GPR83 (ENSTGUG00000026792) #22	PANX1 (ENSTGUG00000012828)	ENSTGUG00000012838	ENSTGUG00000012842	HEPHL1 (ENSTGUG00000012829)	VSTM5 (ENSTGUG00000012843)	MED17 (ENSTGUG00000012845)	C11orf54 (ENSTGUG00000012850)	TAF1D (ENSTGUG00000012851)	ENSTGUG00000019295	SMCO4 (ENSTGUG00000024656)	DEUP1 (ENSTGUG00000012862)	SLC36A4 (ENSTGUG00000012863)	ENSTGUG00000012868	MTNR1B (ENSTGUG00000028228)	FAT3 (ENSTGUG00000012873)
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	159	ENSGFOG00000002489	MOSPD1 (ENSGFOG00000002480)	INTS6L (ENSGFOG00000002461)	MMGT1 (ENSGFOG00000009735)	SLC9A6 (ENSGFOG00000009451)	FHL1 (ENSGFOG00000009401)	MAP7D3 (ENSGFOG00000009350)	ZC4H2 (ENSGFOG00000009339)	ZC3H12B (ENSGFOG00000009331)	LAS1L (ENSGFOG00000009316)	ENSGFOG00000009305	ENSGFOG00000009301	ENSGFOG00000009296	ENSGFOG00000009283	ENSGFOG00000009265	ENSGFOG00000009254 #22	ENSGFOG00000009246 #22	EDA2R (ENSGFOG00000009238)	OPHN1 (ENSGFOG00000009211)	YIPF6 (ENSGFOG00000009206)	STARD8 (ENSGFOG00000008862) ##31	EFNB1 (ENSGFOG00000008847)	EDA (ENSGFOG00000008840)	ENSGFOG00000008839	ENSGFOG00000008834	ENSGFOG00000008829	ENSGFOG00000008811	P2RY4 (ENSGFOG00000008806)
Medium ground finch	MODERN SPECIES	159	MOSPD1 (ENSGFOG00000002480)	INTS6L (ENSGFOG00000002461)	MMGT1 (ENSGFOG00000009735)	SLC9A6 (ENSGFOG00000009451)	FHL1 (ENSGFOG00000009401)	MAP7D3 (ENSGFOG00000009350)	ZC4H2 (ENSGFOG00000009339)	ZC3H12B (ENSGFOG00000009331)	LAS1L (ENSGFOG00000009316)	ENSGFOG00000009305	ENSGFOG00000009301	ENSGFOG00000009296	ENSGFOG00000009283	ENSGFOG00000009265	ENSGFOG00000009254 #22	ENSGFOG00000009246 #22	EDA2R (ENSGFOG00000009238)	OPHN1 (ENSGFOG00000009211)	YIPF6 (ENSGFOG00000009206)	STARD8 (ENSGFOG00000008862) ##31	EFNB1 (ENSGFOG00000008847)	EDA (ENSGFOG00000008840)	ENSGFOG00000008839	ENSGFOG00000008834	ENSGFOG00000008829	ENSGFOG00000008811	P2RY4 (ENSGFOG00000008806)
Medium ground finch	MODERN SPECIES	5	CNTN5 (ENSGFOG00000003137)	ENSGFOG00000003199	CCDC82 (ENSGFOG00000003213)	MAML2 (ENSGFOG00000003232)	MTMR2 (ENSGFOG00000003280)	CEP57 (ENSGFOG00000003350)	FAM76B (ENSGFOG00000003753)	SESN3 (ENSGFOG00000003762)	ENDOD1 (ENSGFOG00000003780)	CWC15 (ENSGFOG00000003791)	AMOTL1 (ENSGFOG00000003833)	ENSGFOG00000004274	C11orf97 (ENSGFOG00000004289)	ANKRD49 (ENSGFOG00000004301) #21	MRE11 (ENSGFOG00000004308)	GPR83 (ENSGFOG00000004321) #22	PANX1 (ENSGFOG00000004334)	ENSGFOG00000004352	ENSGFOG00000004362	ENSGFOG00000004413	ENSGFOG00000004426	ENSGFOG00000004454	VSTM5 (ENSGFOG00000004486)	MED17 (ENSGFOG00000004494)	C11orf54 (ENSGFOG00000004512)	TAF1D (ENSGFOG00000004531)	ENSGFOG00000004589	SMCO4 (ENSGFOG00000004649)	SLC36A4 (ENSGFOG00000004662)	MTNR1B (ENSGFOG00000004699)	FAT3 (ENSGFOG00000004779)
Great tit	DUPLICATION
Great tit	MODERN SPECIES	24	MOSPD1 (ENSPMJG00000009084)	INTS6L (ENSPMJG00000009083)	MMGT1 (ENSPMJG00000009082)	SLC9A6 (ENSPMJG00000008070)	FHL1 (ENSPMJG00000008059)	MAP7D3 (ENSPMJG00000008039)	ZC4H2 (ENSPMJG00000008032)	ZC3H12B (ENSPMJG00000008029)	LAS1L (ENSPMJG00000008024)	ENSPMJG00000008017	ENSPMJG00000008014	ENSPMJG00000008003	ENSPMJG00000007993	ENSPMJG00000007990	ENSPMJG00000007985	ENSPMJG00000007983 #22	ENSPMJG00000007979 #22	EDA2R (ENSPMJG00000007977)	AR (ENSPMJG00000007948)	OPHN1 (ENSPMJG00000007942)	YIPF6 (ENSPMJG00000007941)	STARD8 (ENSPMJG00000007940) ##31	EFNB1 (ENSPMJG00000007927)	NALF2 (ENSPMJG00000007924)	ENSPMJG00000007923	EDA (ENSPMJG00000007920)	ENSPMJG00000007918	ENSPMJG00000007917	ENSPMJG00000007916	ENSPMJG00000007913	P2RY4 (ENSPMJG00000007912)
Great tit	MODERN SPECIES	24	INTS6L (ENSPMJG00000009083)	MMGT1 (ENSPMJG00000009082)	SLC9A6 (ENSPMJG00000008070)	FHL1 (ENSPMJG00000008059)	MAP7D3 (ENSPMJG00000008039)	ZC4H2 (ENSPMJG00000008032)	ZC3H12B (ENSPMJG00000008029)	LAS1L (ENSPMJG00000008024)	ENSPMJG00000008017	ENSPMJG00000008014	ENSPMJG00000008003	ENSPMJG00000007993	ENSPMJG00000007990	ENSPMJG00000007985	ENSPMJG00000007983 #22	ENSPMJG00000007979 #22	EDA2R (ENSPMJG00000007977)	AR (ENSPMJG00000007948)	OPHN1 (ENSPMJG00000007942)	YIPF6 (ENSPMJG00000007941)	STARD8 (ENSPMJG00000007940) ##31	EFNB1 (ENSPMJG00000007927)	NALF2 (ENSPMJG00000007924)	ENSPMJG00000007923	EDA (ENSPMJG00000007920)	ENSPMJG00000007918	ENSPMJG00000007917	ENSPMJG00000007916	ENSPMJG00000007913	P2RY4 (ENSPMJG00000007912)	ENSPMJG00000007911
Great tit	MODERN SPECIES		ARHGAP42 (ENSPMJG00000017852)	CNTN5 (ENSPMJG00000017853)	CCDC82 (ENSPMJG00000017854)	MAML2 (ENSPMJG00000017855)	MTMR2 (ENSPMJG00000017856)	CEP57 (ENSPMJG00000017857)	FAM76B (ENSPMJG00000017858)	SESN3 (ENSPMJG00000017859)	ENDOD1 (ENSPMJG00000017860)	CWC15 (ENSPMJG00000017862)	AMOTL1 (ENSPMJG00000017863)	FUT4 (ENSPMJG00000017864)	ENSPMJG00000017865	ANKRD49 (ENSPMJG00000017866) #21	MRE11 (ENSPMJG00000017867)	GPR83 (ENSPMJG00000017868) #22	PANX1 (ENSPMJG00000017869)	ENSPMJG00000017870	ENSPMJG00000017871	ENSPMJG00000017872	ENSPMJG00000017874	ENSPMJG00000017875	VSTM5 (ENSPMJG00000017876)	MED17 (ENSPMJG00000017877)	C11orf54 (ENSPMJG00000017878)	TAF1D (ENSPMJG00000017879)	ENSPMJG00000017889	SMCO4 (ENSPMJG00000017893)	DEUP1 (ENSPMJG00000017897)	SLC36A4 (ENSPMJG00000017902)	ENSPMJG00000000068
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	694						ZC4H2 (ENSSCUG00000013899)	ZC3H12B (ENSSCUG00000013903)	LAS1L (ENSSCUG00000013906)	ENSSCUG00000013910	ENSSCUG00000013914	ENSSCUG00000013922	ENSSCUG00000013928	ENSSCUG00000013937	ENSSCUG00000013943	HEPH (ENSSCUG00000013949)	ENSSCUG00000013952 #22	GPR83 (ENSSCUG00000013954) #22	EDA2R (ENSSCUG00000013957)	AR (ENSSCUG00000013959)	OPHN1 (ENSSCUG00000013963)	YIPF6 (ENSSCUG00000013971)	STARD8 (ENSSCUG00000013978) ##31	ENSSCUG00000013982
African ostrich	MODERN SPECIES	694					ZC4H2 (ENSSCUG00000013899)	ZC3H12B (ENSSCUG00000013903)	LAS1L (ENSSCUG00000013906)	ENSSCUG00000013910	ENSSCUG00000013914	ENSSCUG00000013922	ENSSCUG00000013928	ENSSCUG00000013937	ENSSCUG00000013943	HEPH (ENSSCUG00000013949)	ENSSCUG00000013952 #22	GPR83 (ENSSCUG00000013954) #22	EDA2R (ENSSCUG00000013957)	AR (ENSSCUG00000013959)	OPHN1 (ENSSCUG00000013963)	YIPF6 (ENSSCUG00000013971)	STARD8 (ENSSCUG00000013978) ##31	ENSSCUG00000013982
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	36				ZC4H2 (ENSCPRG00005008956)	ENSCPRG00005008963	ENSCPRG00005008970	LAS1L (ENSCPRG00005008978)	ENSCPRG00005008998	ENSCPRG00005009005	ENSCPRG00005009012	ENSCPRG00005009014	ENSCPRG00005009016	ENSCPRG00005009019	ENSCPRG00005009028	HEPH (ENSCPRG00005009033)	ENSCPRG00005009040 #22	ENSCPRG00005009042 #22	EDA2R (ENSCPRG00005009044)	AR (ENSCPRG00005009048)	OPHN1 (ENSCPRG00005009060)	YIPF6 (ENSCPRG00005009067)	STARD8 (ENSCPRG00005009070) ##31	ENSCPRG00005009076	EFNB1 (ENSCPRG00005009087)	NALF2 (ENSCPRG00005009097)	EDA (ENSCPRG00005009102)	ENSCPRG00005009107	ENSCPRG00005009116	ENSCPRG00005009123	ENSCPRG00005009125	P2RY4 (ENSCPRG00005009130)
Australian saltwater crocodile	MODERN SPECIES	36			ZC4H2 (ENSCPRG00005008956)	ENSCPRG00005008963	ENSCPRG00005008970	LAS1L (ENSCPRG00005008978)	ENSCPRG00005008998	ENSCPRG00005009005	ENSCPRG00005009012	ENSCPRG00005009014	ENSCPRG00005009016	ENSCPRG00005009019	ENSCPRG00005009028	HEPH (ENSCPRG00005009033)	ENSCPRG00005009040 #22	ENSCPRG00005009042 #22	EDA2R (ENSCPRG00005009044)	AR (ENSCPRG00005009048)	OPHN1 (ENSCPRG00005009060)	YIPF6 (ENSCPRG00005009067)	STARD8 (ENSCPRG00005009070) ##31	ENSCPRG00005009076	EFNB1 (ENSCPRG00005009087)	NALF2 (ENSCPRG00005009097)	EDA (ENSCPRG00005009102)	ENSCPRG00005009107	ENSCPRG00005009116	ENSCPRG00005009123	ENSCPRG00005009125	P2RY4 (ENSCPRG00005009130)	INPPL1 (ENSCPRG00005009132)
Australian saltwater crocodile	MODERN SPECIES	27	ARHGAP42 (ENSCPRG00005014996)	CNTN5 (ENSCPRG00005015041)	CCDC82 (ENSCPRG00005015051)	MAML2 (ENSCPRG00005015057)	MTMR2 (ENSCPRG00005015062)	CEP57 (ENSCPRG00005015066)	FAM76B (ENSCPRG00005015082)	SESN3 (ENSCPRG00005015169)	ENDOD1 (ENSCPRG00005015178)	CWC15 (ENSCPRG00005015180)	AMOTL1 (ENSCPRG00005015195)	PIWIL4 (ENSCPRG00005015220)	FUT4 (ENSCPRG00005015235)	ENSCPRG00005015245	MRE11 (ENSCPRG00005015256)	GPR83 (ENSCPRG00005015271) #22	ENSCPRG00005015273	ENSCPRG00005015275	ENSCPRG00005015292	ENSCPRG00005015337	ENSCPRG00005015345	MED17 (ENSCPRG00005015350)	C11orf54 (ENSCPRG00005015358)	ENSCPRG00005015361	ENSCPRG00005015383	SMCO4 (ENSCPRG00005015426)	MTNR1B (ENSCPRG00005015445)	FAT3 (ENSCPRG00005015491)	CHORDC1 (ENSCPRG00005015503)	ENSCPRG00005015516	ENSCPRG00005015519
Cryptodira	ANCESTRAL SPECIES		ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT00940000166029.c	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT00940000166029.c	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Testudinidae	ANCESTRAL SPECIES		ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT00940000166029.c	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981.e
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2542						ZC4H2 (ENSCABG00000012755)	ZC3H12B (ENSCABG00000012753)	ENSCABG00000012751	ENSCABG00000012750	ENSCABG00000012749	ENSCABG00000012742	ENSCABG00000012737	ENSCABG00000012736	ENSCABG00000012735	HEPH (ENSCABG00000012399)	ENSCABG00000012381 #22	ENSCABG00000012377 #22	EDA2R (ENSCABG00000012375)	ENSCABG00000012369
Abingdon island giant tortoise	MODERN SPECIES	2542					ZC4H2 (ENSCABG00000012755)	ZC3H12B (ENSCABG00000012753)	ENSCABG00000012751	ENSCABG00000012750	ENSCABG00000012749	ENSCABG00000012742	ENSCABG00000012737	ENSCABG00000012736	ENSCABG00000012735	HEPH (ENSCABG00000012399)	ENSCABG00000012381 #22	ENSCABG00000012377 #22	EDA2R (ENSCABG00000012375)	ENSCABG00000012369
Abingdon island giant tortoise	MODERN SPECIES	270														ANKRD49 (ENSCABG00000001438) #21	MRE11 (ENSCABG00000001442)	GPR83 (ENSCABG00000001450) #22	PANX1 (ENSCABG00000001451)	ENSCABG00000001453	ENSCABG00000001455	ENSCABG00000001459	ENSCABG00000001460	ENSCABG00000001467	ENSCABG00000001510	ENSCABG00000001520
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	23	ARHGEF9 (ENSGEVG00005012564)	AMER1 (ENSGEVG00005012446)	ASB12 (ENSGEVG00005012432)	MTMR8 (ENSGEVG00005012378)	ENSGEVG00005012327	C8orf48 (ENSGEVG00005012298)	ZC4H2 (ENSGEVG00005012271)	ZC3H12B (ENSGEVG00005012207)	LAS1L (ENSGEVG00005012148)	ENSGEVG00005012119	ENSGEVG00005011941	ENSGEVG00005011860	ENSGEVG00005011813	ENSGEVG00005011773	HEPH (ENSGEVG00005010948)	ENSGEVG00005010783 #22	ENSGEVG00005010747 #22	EDA2R (ENSGEVG00005010722)	AR (ENSGEVG00005010515)	OPHN1 (ENSGEVG00005010394)	YIPF6 (ENSGEVG00005010366)	STARD8 (ENSGEVG00005010217) ##31	ENSGEVG00005010146	EFNB1 (ENSGEVG00005010084)	ENSGEVG00005010041	NALF2 (ENSGEVG00005010003)	EDA (ENSGEVG00005009984)	ENSGEVG00005009960	ENSGEVG00005009936	ENSGEVG00005009908	ENSGEVG00005009830
Goode s thornscrub tortoise	MODERN SPECIES	23	AMER1 (ENSGEVG00005012446)	ASB12 (ENSGEVG00005012432)	MTMR8 (ENSGEVG00005012378)	ENSGEVG00005012327	C8orf48 (ENSGEVG00005012298)	ZC4H2 (ENSGEVG00005012271)	ZC3H12B (ENSGEVG00005012207)	LAS1L (ENSGEVG00005012148)	ENSGEVG00005012119	ENSGEVG00005011941	ENSGEVG00005011860	ENSGEVG00005011813	ENSGEVG00005011773	HEPH (ENSGEVG00005010948)	ENSGEVG00005010783 #22	ENSGEVG00005010747 #22	EDA2R (ENSGEVG00005010722)	AR (ENSGEVG00005010515)	OPHN1 (ENSGEVG00005010394)	YIPF6 (ENSGEVG00005010366)	STARD8 (ENSGEVG00005010217) ##31	ENSGEVG00005010146	EFNB1 (ENSGEVG00005010084)	ENSGEVG00005010041	NALF2 (ENSGEVG00005010003)	EDA (ENSGEVG00005009984)	ENSGEVG00005009960	ENSGEVG00005009936	ENSGEVG00005009908	ENSGEVG00005009830	P2RY4 (ENSGEVG00005009806)
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005007596	ENSGEVG00005007582	ENSGEVG00005007569	MTMR2 (ENSGEVG00005007507)	CEP57 (ENSGEVG00005007470)	FAM76B (ENSGEVG00005007437)	SESN3 (ENSGEVG00005007415)	ENDOD1 (ENSGEVG00005007403)	CWC15 (ENSGEVG00005007384)	AMOTL1 (ENSGEVG00005007334)	PIWIL4 (ENSGEVG00005006224)	FUT4 (ENSGEVG00005006031)	C11orf97 (ENSGEVG00005006010)	ANKRD49 (ENSGEVG00005005970) #21	MRE11 (ENSGEVG00005005932)	GPR83 (ENSGEVG00005005900) #22	ENSGEVG00005005884	HEPHL1 (ENSGEVG00005005429)	ENSGEVG00005005301	ENSGEVG00005005236	ENSGEVG00005005202	VSTM5 (ENSGEVG00005005173)	MED17 (ENSGEVG00005005133)	C11orf54 (ENSGEVG00005005073)	ENSGEVG00005005048	ENSGEVG00005002997	SMCO4 (ENSGEVG00005002950)	DEUP1 (ENSGEVG00005002935)	ENSGEVG00005002921	MTNR1B (ENSGEVG00005002911)	ENSGEVG00005002896
Emydidae	ANCESTRAL SPECIES	19	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B.`b	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994	ENSGT01030000234590.A.a.b	ENSGT00940000166029.d	ENSGT00940000166029.c	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00940000153190.B.a.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174.a
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	822	ENSCPBG00000006962	ENSCPBG00000006968	ENSCPBG00000006975	ZC4H2 (ENSCPBG00000006980)	ZC3H12B (ENSCPBG00000006983)	LAS1L (ENSCPBG00000006993)	ENSCPBG00000007011	ENSCPBG00000007016	ENSCPBG00000007027	ENSCPBG00000007043	ENSCPBG00000007054	ENSCPBG00000007078	ENSCPBG00000007083	ENSCPBG00000007089	HEPH (ENSCPBG00000007136)	ENSCPBG00000007208 #22	ENSCPBG00000007212 #22	EDA2R (ENSCPBG00000007219)	AR (ENSCPBG00000007235)	OPHN1 (ENSCPBG00000007247)	YIPF6 (ENSCPBG00000007267)	STARD8 (ENSCPBG00000007286) ##31	ENSCPBG00000007298
painted turtle	MODERN SPECIES	822	ENSCPBG00000006968	ENSCPBG00000006975	ZC4H2 (ENSCPBG00000006980)	ZC3H12B (ENSCPBG00000006983)	LAS1L (ENSCPBG00000006993)	ENSCPBG00000007011	ENSCPBG00000007016	ENSCPBG00000007027	ENSCPBG00000007043	ENSCPBG00000007054	ENSCPBG00000007078	ENSCPBG00000007083	ENSCPBG00000007089	HEPH (ENSCPBG00000007136)	ENSCPBG00000007208 #22	ENSCPBG00000007212 #22	EDA2R (ENSCPBG00000007219)	AR (ENSCPBG00000007235)	OPHN1 (ENSCPBG00000007247)	YIPF6 (ENSCPBG00000007267)	STARD8 (ENSCPBG00000007286) ##31	ENSCPBG00000007298
painted turtle	MODERN SPECIES	897		ENSCPBG00000024057	MTMR2 (ENSCPBG00000024054)	CEP57 (ENSCPBG00000024051)	FAM76B (ENSCPBG00000024048)	SESN3 (ENSCPBG00000024045)	ENDOD1 (ENSCPBG00000024041)	CWC15 (ENSCPBG00000024037)	AMOTL1 (ENSCPBG00000024034)	PIWIL4 (ENSCPBG00000024031)	ENSCPBG00000024029	FUT4 (ENSCPBG00000024027)	C11orf97 (ENSCPBG00000024025)	ANKRD49 (ENSCPBG00000024024) #21	MRE11 (ENSCPBG00000024022)	GPR83 (ENSCPBG00000024017) #22	PANX1 (ENSCPBG00000024014)	HEPHL1 (ENSCPBG00000024008)	ENSCPBG00000024002	ENSCPBG00000023999	ENSCPBG00000023995	ENSCPBG00000023990	VSTM5 (ENSCPBG00000023989)	MED17 (ENSCPBG00000023986)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	61	ARHGEF9 (ENSTMTG00000019994)	AMER1 (ENSTMTG00000020212)	ASB12 (ENSTMTG00000020238)	MTMR8 (ENSTMTG00000020255)	ENSTMTG00000020433	ZC4H2 (ENSTMTG00000020441)	ZC3H12B (ENSTMTG00000020445)	LAS1L (ENSTMTG00000020454)	ENSTMTG00000020460	ENSTMTG00000020464	ENSTMTG00000020475	ENSTMTG00000020480	ENSTMTG00000020486	ENSTMTG00000020495	HEPH (ENSTMTG00000000444)	ENSTMTG00000000843 #22	ENSTMTG00000000893 #22	EDA2R (ENSTMTG00000000946)	AR (ENSTMTG00000000983)	OPHN1 (ENSTMTG00000001039)	YIPF6 (ENSTMTG00000001111)	ENSTMTG00000001135	STARD8 (ENSTMTG00000001152) ##31	ENSTMTG00000001182	EFNB1 (ENSTMTG00000001196)	NALF2 (ENSTMTG00000001205)	EDA (ENSTMTG00000001218)	ENSTMTG00000001237	ENSTMTG00000001260	ENSTMTG00000001320	ENSTMTG00000001350
Three-toed box turtle	MODERN SPECIES	61	AMER1 (ENSTMTG00000020212)	ASB12 (ENSTMTG00000020238)	MTMR8 (ENSTMTG00000020255)	ENSTMTG00000020433	ZC4H2 (ENSTMTG00000020441)	ZC3H12B (ENSTMTG00000020445)	LAS1L (ENSTMTG00000020454)	ENSTMTG00000020460	ENSTMTG00000020464	ENSTMTG00000020475	ENSTMTG00000020480	ENSTMTG00000020486	ENSTMTG00000020495	HEPH (ENSTMTG00000000444)	ENSTMTG00000000843 #22	ENSTMTG00000000893 #22	EDA2R (ENSTMTG00000000946)	AR (ENSTMTG00000000983)	OPHN1 (ENSTMTG00000001039)	YIPF6 (ENSTMTG00000001111)	ENSTMTG00000001135	STARD8 (ENSTMTG00000001152) ##31	ENSTMTG00000001182	EFNB1 (ENSTMTG00000001196)	NALF2 (ENSTMTG00000001205)	EDA (ENSTMTG00000001218)	ENSTMTG00000001237	ENSTMTG00000001260	ENSTMTG00000001320	ENSTMTG00000001350	P2RY4 (ENSTMTG00000001357)
Three-toed box turtle	MODERN SPECIES	41	CCDC82 (ENSTMTG00000020843)	MAML2 (ENSTMTG00000020833)	MTMR2 (ENSTMTG00000020816)	CEP57 (ENSTMTG00000020801)	FAM76B (ENSTMTG00000020789)	SESN3 (ENSTMTG00000020784)	ENDOD1 (ENSTMTG00000020781)	CWC15 (ENSTMTG00000020776)	AMOTL1 (ENSTMTG00000020714)	PIWIL4 (ENSTMTG00000020697)	FUT4 (ENSTMTG00000020687)	C11orf97 (ENSTMTG00000020677)	ANKRD49 (ENSTMTG00000020673) #21	ENSTMTG00000020664	ENSTMTG00000020654	GPR83 (ENSTMTG00000020649) #22	ENSTMTG00000020644	HEPHL1 (ENSTMTG00000020465)	ENSTMTG00000020430	ENSTMTG00000020417	ENSTMTG00000020405	VSTM5 (ENSTMTG00000020399)	MED17 (ENSTMTG00000020392)	C11orf54 (ENSTMTG00000020387)	ENSTMTG00000020383	ENSTMTG00000020319	ENSTMTG00000020305	ENSTMTG00000020296	ENSTMTG00000020287	MTNR1B (ENSTMTG00000020281)	FAT3 (ENSTMTG00000020266)
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	2100	MTMR8 (ENSPSIG00000005656)	C8orf48 (ENSPSIG00000017387)	ZC4H2 (ENSPSIG00000016919)	ENSPSIG00000000347	ZC3H12B (ENSPSIG00000016853)	LAS1L (ENSPSIG00000016596)	ENSPSIG00000016498	ENSPSIG00000014443	ENSPSIG00000014294	ENSPSIG00000013763	ENSPSIG00000013698	ENSPSIG00000012869	ENSPSIG00000012652	ENSPSIG00000012313	HEPH (ENSPSIG00000010188)	ENSPSIG00000009529 #22
Chinese turtle	MODERN SPECIES	2221															ENSPSIG00000001722	ENSPSIG00000016312 #22
Chinese turtle	MODERN SPECIES	1972														ANKRD49 (ENSPSIG00000007007) #21	MRE11 (ENSPSIG00000005945)	GPR83 (ENSPSIG00000005775) #22	PANX1 (ENSPSIG00000005582)	HEPHL1 (ENSPSIG00000004803)	ENSPSIG00000004705	ENSPSIG00000004492	ENSPSIG00000004429	VSTM5 (ENSPSIG00000004406)	MED17 (ENSPSIG00000004370)	C11orf54 (ENSPSIG00000004224)	ENSPSIG00000004198
Lepidosauria	ANCESTRAL SPECIES	17	ENSGT00940000175059	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994.c	ENSGT01030000234590.A.a.b	ENSGT00940000166029	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174
tuatara	DUPLICATION
tuatara	MODERN SPECIES	717																ENSSPUG00000007220 #22	ENSSPUG00000007240 #22	ENSSPUG00000007327
tuatara	MODERN SPECIES	717															ENSSPUG00000007220 #22	ENSSPUG00000007240 #22	ENSSPUG00000007327
Episquamata	ANCESTRAL SPECIES	2	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT01010000223591	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994.c	ENSGT01030000234590.A.a.b	ENSGT00940000166029	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00940000161773	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000158183	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00520000058823	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000157994.c	ENSGT01030000234590.A.a.b	ENSGT00940000166029	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000153123.A	ENSGT00940000161773	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	67	EFNB1 (ENSSMRG00000006158)	ENSSMRG00000006183	STARD8 (ENSSMRG00000006206) ##31	YIPF6 (ENSSMRG00000006235)	EDA2R (ENSSMRG00000006242)	AR (ENSSMRG00000006257)	OPHN1 (ENSSMRG00000006263)	ENSSMRG00000006284	ENSSMRG00000006285	ENSSMRG00000006287	ENSSMRG00000006288	ENSSMRG00000006295	ENSSMRG00000006310	ENSSMRG00000006313	HEPH (ENSSMRG00000006330)	ENSSMRG00000006360 #22	ENSSMRG00000006390	AMOT (ENSSMRG00000006395)	ATP7A (ENSSMRG00000006409)	ENSSMRG00000006417	MAGT1 (ENSSMRG00000006438)	ATRX (ENSSMRG00000006512)	FGF16 (ENSSMRG00000011987)	ZDHHC15 (ENSSMRG00000011995)	UPRT (ENSSMRG00000012004)	ABCB7 (ENSSMRG00000012010)	NEXMIF (ENSSMRG00000012081)	RLIM (ENSSMRG00000012082)	SLC16A2 (ENSSMRG00000012084)	ENSSMRG00000012089	ENSSMRG00000012092
Argentine black and white tegu	MODERN SPECIES	24	CNTN5 (ENSSMRG00000010264)	CCDC82 (ENSSMRG00000010232)	MAML2 (ENSSMRG00000010230)	MTMR2 (ENSSMRG00000010222)	CEP57 (ENSSMRG00000010212)	FAM76B (ENSSMRG00000010211)	SESN3 (ENSSMRG00000010206)	ENDOD1 (ENSSMRG00000010205)	CWC15 (ENSSMRG00000010192)	AMOTL1 (ENSSMRG00000010190)	PIWIL4 (ENSSMRG00000009898)	FUT4 (ENSSMRG00000009896)	C11orf97 (ENSSMRG00000009893)	ANKRD49 (ENSSMRG00000009883) #21	MRE11 (ENSSMRG00000009882)	GPR83 (ENSSMRG00000009866) #22	PANX1 (ENSSMRG00000009865)	ENSSMRG00000009859	ENSSMRG00000009854	ENSSMRG00000009850	VSTM5 (ENSSMRG00000009838)	MED17 (ENSSMRG00000009836)	C11orf54 (ENSSMRG00000009835)	ENSSMRG00000009830	ENSSMRG00000009797	CMTR2 (ENSSMRG00000009796)	SMCO4 (ENSSMRG00000009779)	DEUP1 (ENSSMRG00000009760)	SLC36A4 (ENSSMRG00000009758)	MTNR1B (ENSSMRG00000009747)	FAT3 (ENSSMRG00000009743)
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	419	ENSPMRG00000023010	ENSPMRG00000023015	ENSPMRG00000023017	AR (ENSPMRG00000023019)	OPHN1 (ENSPMRG00000018961)	ENSPMRG00000019001	ENSPMRG00000019008	ENSPMRG00000019022	ENSPMRG00000019026	ENSPMRG00000019037	ENSPMRG00000019055	ENSPMRG00000019059	ENSPMRG00000019064	ENSPMRG00000019077	ENSPMRG00000019083	ENSPMRG00000019096 #22	ENSPMRG00000019101 #22	ENSPMRG00000019107	ENSPMRG00000019113	AMOT (ENSPMRG00000019123)	ATP7A (ENSPMRG00000019130)	ENSPMRG00000019135	ENSPMRG00000019139	MAGT1 (ENSPMRG00000019151)	ENSPMRG00000019168	ATRX (ENSPMRG00000019183)	FGF16 (ENSPMRG00000019245)	ENSPMRG00000019250	ZDHHC15 (ENSPMRG00000019257)	UPRT (ENSPMRG00000019271)	ABCB7 (ENSPMRG00000019281)
Common wall lizard	MODERN SPECIES	419	ENSPMRG00000023015	ENSPMRG00000023017	AR (ENSPMRG00000023019)	OPHN1 (ENSPMRG00000018961)	ENSPMRG00000019001	ENSPMRG00000019008	ENSPMRG00000019022	ENSPMRG00000019026	ENSPMRG00000019037	ENSPMRG00000019055	ENSPMRG00000019059	ENSPMRG00000019064	ENSPMRG00000019077	ENSPMRG00000019083	ENSPMRG00000019096 #22	ENSPMRG00000019101 #22	ENSPMRG00000019107	ENSPMRG00000019113	AMOT (ENSPMRG00000019123)	ATP7A (ENSPMRG00000019130)	ENSPMRG00000019135	ENSPMRG00000019139	MAGT1 (ENSPMRG00000019151)	ENSPMRG00000019168	ATRX (ENSPMRG00000019183)	FGF16 (ENSPMRG00000019245)	ENSPMRG00000019250	ZDHHC15 (ENSPMRG00000019257)	UPRT (ENSPMRG00000019271)	ABCB7 (ENSPMRG00000019281)	NEXMIF (ENSPMRG00000019291)
Common wall lizard	MODERN SPECIES	12	CCDC82 (ENSPMRG00000008743)	ENSPMRG00000008736	MAML2 (ENSPMRG00000008730)	MTMR2 (ENSPMRG00000008721)	CEP57 (ENSPMRG00000008718)	FAM76B (ENSPMRG00000008712)	ENSPMRG00000008711	SESN3 (ENSPMRG00000008702)	ENDOD1 (ENSPMRG00000008697)	CWC15 (ENSPMRG00000008694)	AMOTL1 (ENSPMRG00000008682)	ENSPMRG00000008502	FUT4 (ENSPMRG00000008469)	ANKRD49 (ENSPMRG00000008465) #21	MRE11 (ENSPMRG00000008460)	GPR83 (ENSPMRG00000008457) #22	ENSPMRG00000008454	ENSPMRG00000008452	PANX1 (ENSPMRG00000008448)	HEPHL1 (ENSPMRG00000008435)	ENSPMRG00000008426	ENSPMRG00000008372	ENSPMRG00000008351	MED17 (ENSPMRG00000008340)	C11orf54 (ENSPMRG00000008327)	ENSPMRG00000008316	ENSPMRG00000008257	CMTR2 (ENSPMRG00000008242)	SMCO4 (ENSPMRG00000002647)	ENSPMRG00000002637	SLC36A4 (ENSPMRG00000002627)
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000154336 #22
Elapidae	ANCESTRAL SPECIES	14	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT01060000248594.e.a	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00390000005717.b.b.b	ENSGT00940000166132	ENSGT00940000154336 #22	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000153168.A	ENSGT00940000153259.a.a.a	ENSGT00940000160128	ENSGT00950000182887.C.b.b	ENSGT00390000002414	ENSGT00730000111220	ENSGT00940000161362	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450.o	ENSGT00950000182962.a.b
Elapidae_a	ANCESTRAL SPECIES	73	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT01060000248594.e.a	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00390000005717.b.b.b	ENSGT00940000166132	ENSGT00940000154336 #22	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000153168.A	ENSGT00940000153259.a.a.a	ENSGT00940000160128	ENSGT00950000182887.C.b.b	ENSGT00390000002414	ENSGT00730000111220	ENSGT00940000161362	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450.o	ENSGT00950000182962.a.b
Acanthophiinae	ANCESTRAL SPECIES	20	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT01060000248594.e.a	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00390000005717.b.b.b	ENSGT00940000166132	ENSGT00940000154336 #22	ENSGT00950000183061.a.a.a.a.b ##31	ENSGT00940000153168.A	ENSGT00940000153259.a.a.a	ENSGT00940000160128	ENSGT00950000182887.C.b.b	ENSGT00390000002414	ENSGT00730000111220	ENSGT00940000161362	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450.o	ENSGT00950000182962.a.b
Eastern brown snake	MODERN SPECIES	20	CAPN6 (ENSPTXG00000010334)	DCX (ENSPTXG00000010333)	SERTM2 (ENSPTXG00000010332)	ENSPTXG00000010330	ENSPTXG00000010329	TRPC5 (ENSPTXG00000010328)	ENSPTXG00000010327	ZC3H12B (ENSPTXG00000010326)	ZC4H2 (ENSPTXG00000010325)	MTMR8 (ENSPTXG00000010323)	ASB12 (ENSPTXG00000010322)	AMER1 (ENSPTXG00000010321)	ARHGEF9 (ENSPTXG00000010275)	ENSPTXG00000010274	ENSPTXG00000010272	GPR83 (ENSPTXG00000010270) #22	STARD8 (ENSPTXG00000010269) ##31	YIPF6 (ENSPTXG00000010268)	EDA2R (ENSPTXG00000010260)	EFNB1 (ENSPTXG00000010258)	ARR3 (ENSPTXG00000010254)	ENSPTXG00000010252	EDA (ENSPTXG00000010250)	NALF2 (ENSPTXG00000010248)	ZDHHC15 (ENSPTXG00000010246)	UPRT (ENSPTXG00000010244)	ABCB7 (ENSPTXG00000010243)	NEXMIF (ENSPTXG00000010242)	RLIM (ENSPTXG00000010240)	SLC16A2 (ENSPTXG00000010239)	ENSPTXG00000010238
Mainland tiger snake	MODERN SPECIES	104	ENSNSUG00000008001	DCX (ENSNSUG00000007995)	ENSNSUG00000007994	ENSNSUG00000007993	TRPC5 (ENSNSUG00000007991)	LAS1L (ENSNSUG00000007990)	ZC3H12B (ENSNSUG00000007988)	ZC4H2 (ENSNSUG00000007961)	ENSNSUG00000007960	MTMR8 (ENSNSUG00000007958)	ASB12 (ENSNSUG00000007957)	AMER1 (ENSNSUG00000007954)	ENSNSUG00000007909	ENSNSUG00000007907	ENSNSUG00000007904	GPR83 (ENSNSUG00000007892) #22	STARD8 (ENSNSUG00000007869) ##31	YIPF6 (ENSNSUG00000007868)	ENSNSUG00000007865	EFNB1 (ENSNSUG00000007860)	ARR3 (ENSNSUG00000007859)	ENSNSUG00000007858	NALF2 (ENSNSUG00000007857)
Blue-lipped sea krait	MODERN SPECIES	10829																GPR83 (ENSLLTG00000007351) #22
Indian cobra	MODERN SPECIES	13	CAPN6 (ENSNNAG00000012516)	DCX (ENSNNAG00000012439)	SERTM2 (ENSNNAG00000012426)	ENSNNAG00000012419	TRPC5 (ENSNNAG00000012362)	LAS1L (ENSNNAG00000012289)	ENSNNAG00000012281	ENSNNAG00000012246	MTMR8 (ENSNNAG00000012199)	ASB12 (ENSNNAG00000012173)	AMER1 (ENSNNAG00000011960)	ARHGEF9 (ENSNNAG00000011454)	ENSNNAG00000011416	ENSNNAG00000011389	ENSNNAG00000011309	GPR83 (ENSNNAG00000011237) #22	STARD8 (ENSNNAG00000011133) ##31	YIPF6 (ENSNNAG00000011102)	EDA2R (ENSNNAG00000011095)	EFNB1 (ENSNNAG00000011074)	ARR3 (ENSNNAG00000010940)	ENSNNAG00000010905	EDA (ENSNNAG00000010882)	NALF2 (ENSNNAG00000010831)	ZDHHC15 (ENSNNAG00000010747)	UPRT (ENSNNAG00000010719)	ABCB7 (ENSNNAG00000010656)	NEXMIF (ENSNNAG00000010603)	RLIM (ENSNNAG00000010586)	SLC16A2 (ENSNNAG00000010570)	ENSNNAG00000010507
Lizard	MODERN SPECIES	1077													ENSACAG00000003239	ENSACAG00000003255	ENSACAG00000038233	ENSACAG00000003351 #22	ENSACAG00000003376	ENSACAG00000003529	VSIG4 (ENSACAG00000003594)	ENSACAG00000003596	ENSACAG00000003626	ENSACAG00000003659	ENSACAG00000026096	ENSACAG00000003744	ENSACAG00000009628	AR (ENSACAG00000009496)	ENSACAG00000007843 ##31	ENSACAG00000007727
Anura	ANCESTRAL SPECIES	28	ENSGT00940000158183	ENSGT00390000004986	ENSGT00940000175059	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.D	ENSGT01030000234592.B	ENSGT00390000012084	ENSGT00940000160158	ENSGT00950000183200.A.a.a	ENSGT00940000162506	ENSGT00390000003919 #21	ENSGT00390000017288	ENSGT00940000154336 #22	ENSGT00940000153972.A	ENSGT00940000158517	ENSGT00940000166029.a	ENSGT01100000263551.b.a.b	ENSGT00390000011810	ENSGT00940000153123.A	ENSGT00390000015987	ENSGT00940000153190.B.a	ENSGT00940000160117	ENSGT00940000162341	ENSGT00940000154981	ENSGT00940000154174	ENSGT01030000234598.b.a.b.i	ENSGT00940000159621	ENSGT00940000155336.f
Frog	DUPLICATION
Frog	MODERN SPECIES	8	mid2 (ENSXETG00000034770)	ENSXETG00000042922	ENSXETG00000034669	ENSXETG00000037026	XB5934217 [provisional] (ENSXETG00000030253)	msn (ENSXETG00000009770)	ENSXETG00000046252	ENSXETG00000031331	ENSXETG00000038857	vsig4 (ENSXETG00000036128)	hsf3 (ENSXETG00000009764)	hddc3 (ENSXETG00000009763)	ngrn (ENSXETG00000033474)	ENSXETG00000001393	ENSXETG00000037266	gpr83 (ENSXETG00000037478) #22	ENSXETG00000005094 #22	yipf6 (ENSXETG00000005093)	ophn1 (ENSXETG00000005092)	ar (ENSXETG00000005089)	ENSXETG00000046878	ENSXETG00000037810	EDA2R (ENSXETG00000011522)	stard8 (ENSXETG00000011512) ##31	XB5873923 [provisional] (ENSXETG00000011511)	steep1 (ENSXETG00000020806)	efnb1 (ENSXETG00000006578)	ENSXETG00000045876	nalf2 (ENSXETG00000033673)	eda (ENSXETG00000039649)	lrrc32.2 (ENSXETG00000006576)
Frog	MODERN SPECIES	8	ENSXETG00000042922	ENSXETG00000034669	ENSXETG00000037026	XB5934217 [provisional] (ENSXETG00000030253)	msn (ENSXETG00000009770)	ENSXETG00000046252	ENSXETG00000031331	ENSXETG00000038857	vsig4 (ENSXETG00000036128)	hsf3 (ENSXETG00000009764)	hddc3 (ENSXETG00000009763)	ngrn (ENSXETG00000033474)	ENSXETG00000001393	ENSXETG00000037266	gpr83 (ENSXETG00000037478) #22	ENSXETG00000005094 #22	yipf6 (ENSXETG00000005093)	ophn1 (ENSXETG00000005092)	ar (ENSXETG00000005089)	ENSXETG00000046878	ENSXETG00000037810	EDA2R (ENSXETG00000011522)	stard8 (ENSXETG00000011512) ##31	XB5873923 [provisional] (ENSXETG00000011511)	steep1 (ENSXETG00000020806)	efnb1 (ENSXETG00000006578)	ENSXETG00000045876	nalf2 (ENSXETG00000033673)	eda (ENSXETG00000039649)	lrrc32.2 (ENSXETG00000006576)	wnt11b-1 (ENSXETG00000038741)
Frog	MODERN SPECIES	2	ENSXETG00000034471	cwc15 (ENSXETG00000007076)	endod1 (ENSXETG00000036422)	sesn3 (ENSXETG00000007079)	fam76b (ENSXETG00000007080)	cep57 (ENSXETG00000007081)	mtmr2 (ENSXETG00000007082)	amotl1 (ENSXETG00000006385)	ENSXETG00000043087	ENSXETG00000047652	piwil4 (ENSXETG00000006411)	fut4 (ENSXETG00000025292)	ankrd49 (ENSXETG00000006415) #21	ankrd49 (ENSXETG00000037124)	mre11 (ENSXETG00000006417)	gpr83.2 (ENSXETG00000041824) #22	panx1 (ENSXETG00000006428)	ENSXETG00000039901	ENSXETG00000046781	ENSXETG00000043402	hephl1 (ENSXETG00000006429)	ENSXETG00000047130	ENSXETG00000017116	vstm5 (ENSXETG00000017117)	med17 (ENSXETG00000017118)	cep295 (ENSXETG00000036581)	smco4 (ENSXETG00000024646)	ENSXETG00000047627	deup1 (ENSXETG00000017121)	slc36a4 (ENSXETG00000017123)	MTNR1B (ENSXETG00000047022)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	12	ATG4A (ENSLLEG00000026514)	PSMD10 (ENSLLEG00000026674)	ENSLLEG00000019337	IRS4 (ENSLLEG00000019441)	GUCY2F (ENSLLEG00000019788)	OPHN1 (ENSLLEG00000020337)	AR (ENSLLEG00000020805)	ENSLLEG00000020894	ENSLLEG00000020929	ENSLLEG00000020955	ENSLLEG00000021075	ENSLLEG00000021195	ENSLLEG00000021241	ENSLLEG00000021520	ENSLLEG00000021645	ENSLLEG00000021669 #22	ALG13 (ENSLLEG00000021735)	ENSLLEG00000022401	SERTM2 (ENSLLEG00000022469)	DCX (ENSLLEG00000022490)	TSSK2 (ENSLLEG00000022584)	CAPN6 (ENSLLEG00000022636)	PAK3 (ENSLLEG00000022806)	ENSLLEG00000023408	CHRDL1 (ENSLLEG00000023476)	AMMECR1 (ENSLLEG00000023627)	TMEM164 (ENSLLEG00000023713)	ENSLLEG00000023759	ENSLLEG00000023771	ENSLLEG00000023788	ENSLLEG00000023805
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000001648	MAML2 (ENSLLEG00000001625)	MTMR2 (ENSLLEG00000001551)	CEP57 (ENSLLEG00000001493)	FAM76B (ENSLLEG00000001380)	ENSLLEG00000001302	ENSLLEG00000001264	CWC15 (ENSLLEG00000001240)	AMOTL1 (ENSLLEG00000001089)	PIWIL4 (ENSLLEG00000000999)	FUT4 (ENSLLEG00000000971)	ENSLLEG00000000917	ANKRD49 (ENSLLEG00000000894) #21	MRE11 (ENSLLEG00000000758)	ENSLLEG00000000746	GPR83 (ENSLLEG00000000726) #22	ENSLLEG00000000696	PANX1 (ENSLLEG00000000668)	ENSLLEG00000000585	ENSLLEG00000028296	ENSLLEG00000028258	ENSLLEG00000028224	VSTM5 (ENSLLEG00000028205)	MED17 (ENSLLEG00000027849)	ENSLLEG00000027082	SMCO4 (ENSLLEG00000027027)	ENSLLEG00000027011	ENSLLEG00000026662	ENSLLEG00000026627	ENSLLEG00000026302	MTNR1B (ENSLLEG00000026261)
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	302					ENSLACG00000017942	TMEM263 (ENSLACG00000017757)	ENSLACG00000017633	RIC8B (ENSLACG00000017518)	RFX4 (ENSLACG00000017280)	POLR3B (ENSLACG00000017054)	endouc (ENSLACG00000016951)	cyb5r3 (ENSLACG00000016901)	ENSLACG00000016752	ENSLACG00000022562	HEPH (ENSLACG00000016535)	ENSLACG00000016291 #22	ENSLACG00000015939 #22	AR (ENSLACG00000015024)	OPHN1 (ENSLACG00000014452)	YIPF6 (ENSLACG00000014312)	STARD8 (ENSLACG00000013457) ##31	ENSLACG00000013074	steep1 (ENSLACG00000012468)	ENSLACG00000012166
Coelacanth	MODERN SPECIES	302				ENSLACG00000017942	TMEM263 (ENSLACG00000017757)	ENSLACG00000017633	RIC8B (ENSLACG00000017518)	RFX4 (ENSLACG00000017280)	POLR3B (ENSLACG00000017054)	endouc (ENSLACG00000016951)	cyb5r3 (ENSLACG00000016901)	ENSLACG00000016752	ENSLACG00000022562	HEPH (ENSLACG00000016535)	ENSLACG00000016291 #22	ENSLACG00000015939 #22	AR (ENSLACG00000015024)	OPHN1 (ENSLACG00000014452)	YIPF6 (ENSLACG00000014312)	STARD8 (ENSLACG00000013457) ##31	ENSLACG00000013074	steep1 (ENSLACG00000012468)	ENSLACG00000012166
Coelacanth	MODERN SPECIES	1947														ANKRD49 (ENSLACG00000007665) #21	MRE11 (ENSLACG00000004111)	GPR83 (ENSLACG00000003730) #22	ENSLACG00000001150
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1487	ENSCMIG00000017084	ENSCMIG00000017087	ENSCMIG00000017090	ENSCMIG00000017093	ENSCMIG00000017098	ENSCMIG00000017099	ENSCMIG00000017100	ENSCMIG00000017102	ENSCMIG00000017103	ENSCMIG00000017104	ENSCMIG00000017106	ENSCMIG00000017107	eda (ENSCMIG00000017108)	arr3a (ENSCMIG00000017118)	ENSCMIG00000017200	ENSCMIG00000017257 #22	ENSCMIG00000017261	AR (ENSCMIG00000017264)	OPHN1 (ENSCMIG00000017268)	steep1 (ENSCMIG00000017283)	ENSCMIG00000017284	C21orf140 (ENSCMIG00000017287)	ENSCMIG00000017289
Elephant shark	MODERN SPECIES	1489	arhgap42a (ENSCMIG00000012195)	khk (ENSCMIG00000012250)	ENSCMIG00000012268	ENSCMIG00000012274	ENSCMIG00000012277	MTMR2 (ENSCMIG00000012331)	CEP57 (ENSCMIG00000012446)	fam76b (ENSCMIG00000012450)	ENSCMIG00000012461	cwc15 (ENSCMIG00000012465)	AMOTL1 (ENSCMIG00000012476)	PIWIL4 (ENSCMIG00000012588)	FUT4 (ENSCMIG00000012765)	ankrd49 (ENSCMIG00000012766) #21	mre11a (ENSCMIG00000012782)	GPR83 (ENSCMIG00000012971) #22	panx1a (ENSCMIG00000012981)	HEPH (ENSCMIG00000013106)	ENSCMIG00000013435	ENSCMIG00000013439	ENSCMIG00000013442	med17 (ENSCMIG00000013456)	ENSCMIG00000013479	SMCO4 (ENSCMIG00000013485)	ENSCMIG00000013491	SLC36A4 (ENSCMIG00000013501)	ENSCMIG00000013502	fat3a (ENSCMIG00000013527)	ENSCMIG00000013585	ENSCMIG00000013592	chordc1a (ENSCMIG00000013595)