Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000157469 #8	ENSGT00850000133636 #9	ENSGT00940000155066 #10	ENSGT00590000083134.a.b #11	ENSGT00940000158424 #12	ENSGT00390000016956 #13	ENSGT00940000157731 #14	ENSGT00970000193372.b #15	ENSGT00390000010895 #16	ENSGT00390000013776 #17	ENSGT00940000155954.a #18	ENSGT01030000234582.e.a #19	ENSGT00530000063489.a #20	ENSGT00940000159500 #21	ENSGT00940000166595.a	ENSGT00940000156504 #22	ENSGT00940000156948 #23	ENSGT00940000159765 #24	ENSGT00940000158471 #25	ENSGT00390000005935 #26	ENSGT00940000156702.b #27	ENSGT00390000016940.c.b #28	ENSGT01050000244857.B.b #29	ENSGT00940000159052 #30	ENSGT01070000253857 #31	ENSGT00940000157018 #32	ENSGT00910000146920	ENSGT00940000163812	ENSGT00940000161126 #34	ENSGT00940000155522 #35	ENSGT00390000003164 #36
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00890000139453.b	ENSGT00940000157469 #8	ENSGT00850000133636 #9	ENSGT00940000155066 #10	ENSGT00590000083134.a.b #11	ENSGT00940000158424 #12	ENSGT00390000016956 #13	ENSGT00940000157731 #14	ENSGT00970000193372.b #15	ENSGT00390000010895 #16	ENSGT00390000013776 #17	ENSGT00940000155954.a #18	ENSGT01030000234582.e.a #19	ENSGT00530000063489.a #20	ENSGT00940000159500 #21	ENSGT00940000156504 #22	ENSGT00940000156948 #23	ENSGT00940000159765 #24	ENSGT00940000158471 #25	ENSGT00390000005935 #26	ENSGT00940000156702.b #27	ENSGT00390000016940.c.b #28	ENSGT01050000244857.B.b #29	ENSGT00940000159052 #30	ENSGT01070000253857 #31	ENSGT00940000157018 #32	ENSGT00910000146920	ENSGT00940000163812	ENSGT00940000161126 #34	ENSGT00940000155522 #35	ENSGT00390000003164 #36
Marmotini	ANCESTRAL SPECIES	2	ENSGT00890000139453.b	ENSGT00940000157469 #8	ENSGT00850000133636 #9	ENSGT00940000155066 #10	ENSGT00590000083134.a.b #11	ENSGT00940000158424 #12	ENSGT00390000016956 #13	ENSGT00940000157731 #14	ENSGT00970000193372.b #15	ENSGT00390000010895 #16	ENSGT00390000013776 #17	ENSGT00940000155954.a #18	ENSGT01030000234582.e.a #19	ENSGT00530000063489.a #20	ENSGT00940000159500 #21	ENSGT00940000156504 #22	ENSGT00940000156948 #23	ENSGT00940000159765 #24	ENSGT00940000158471 #25	ENSGT00390000005935 #26	ENSGT00940000156702.b #27	ENSGT00390000016940.c.b #28	ENSGT01050000244857.B.b #29	ENSGT00940000159052 #30	ENSGT01070000253857 #31	ENSGT00940000157018 #32	ENSGT00940000163812	ENSGT00940000161126 #34	ENSGT00940000155522 #35	ENSGT00390000003164 #36	ENSGT00390000008124 #37
Marmotini_b	ANCESTRAL SPECIES	71		ENSGT00940000157469 #8	ENSGT00850000133636 #9	ENSGT00940000155066 #10	ENSGT00590000083134.a.b #11	ENSGT00940000158424 #12	ENSGT00390000016956 #13	ENSGT00940000157731 #14	ENSGT00970000193372.b #15	ENSGT00390000010895 #16	ENSGT00390000013776 #17	ENSGT00940000155954.a #18	ENSGT01030000234582.e.a #19	ENSGT00530000063489.a #20	ENSGT00940000159500 #21	ENSGT00940000156504 #22	ENSGT00940000156948 #23	ENSGT00940000159765 #24	ENSGT00940000158471 #25	ENSGT00390000005935 #26	ENSGT00940000156702.b #27	ENSGT00390000016940.c.b #28	ENSGT01050000244857.B.b #29	ENSGT00940000159052 #30	ENSGT01070000253857 #31	ENSGT00940000157018 #32	ENSGT00940000163812	ENSGT00940000161126 #34	ENSGT00940000155522 #35	ENSGT00390000003164 #36	ENSGT00390000008124 #37
Arctic ground squirrel	MODERN SPECIES	76		DOCK10 (ENSUPAG00010013911) #8	CCDC195 (ENSUPAG00010013906) #9	CUL3 (ENSUPAG00010013885) #10	FAM124B (ENSUPAG00010013880) #11	SERPINE2 (ENSUPAG00010013865) #12	MRPL44 (ENSUPAG00010013857) #13	WDFY1 (ENSUPAG00010013839) #14	AP1S3 (ENSUPAG00010013831) #15	SCG2 (ENSUPAG00010013824) #16	ENSUPAG00010013818 #17	ACSL3 (ENSUPAG00010013795) #18	MOGAT1 (ENSUPAG00010013784) #19	FARSB (ENSUPAG00010013739) #20	SGPP2 (ENSUPAG00010013717) #21	PAX3 (ENSUPAG00010013684) #22	EPHA4 (ENSUPAG00010013634) #23	SLC4A3 (ENSUPAG00010013611) #24	STK11IP (ENSUPAG00010013521) #25	INHA (ENSUPAG00010013509) #26	OBSL1 (ENSUPAG00010013394) #27	TMEM198 (ENSUPAG00010013374) #28	CHPF (ENSUPAG00010013363) #29	ASIC4 (ENSUPAG00010013332) #30	ENSUPAG00010013318 #31	GMPPA (ENSUPAG00010013262) #32	ENSUPAG00010013257 #33	SPEG (ENSUPAG00010013153) #34	DES (ENSUPAG00010013134) #35	DNPEP (ENSUPAG00010013076) #36	ENSUPAG00010013070 #37
Squirrel	MODERN SPECIES	169		DOCK10 (ENSSTOG00000013407) #8	CCDC195 (ENSSTOG00000034827) #9	CUL3 (ENSSTOG00000015369) #10	FAM124B (ENSSTOG00000020013) #11	SERPINE2 (ENSSTOG00000009649) #12	MRPL44 (ENSSTOG00000029006) #13	WDFY1 (ENSSTOG00000009620) #14	AP1S3 (ENSSTOG00000009617) #15	SCG2 (ENSSTOG00000025412) #16	KCNE4 (ENSSTOG00000010997) #17	ACSL3 (ENSSTOG00000022995) #18	MOGAT1 (ENSSTOG00000016172) #19	FARSB (ENSSTOG00000016169) #20	SGPP2 (ENSSTOG00000016164) #21	PAX3 (ENSSTOG00000008650) #22	EPHA4 (ENSSTOG00000002998) #23	SLC4A3 (ENSSTOG00000003859) #24	STK11IP (ENSSTOG00000012441) #25	INHA (ENSSTOG00000012437) #26	OBSL1 (ENSSTOG00000012425) #27	TMEM198 (ENSSTOG00000012415) #28	CHPF (ENSSTOG00000012409) #29	ASIC4 (ENSSTOG00000012402) #30	GMPPA (ENSSTOG00000028855) #32	SPEGNB (ENSSTOG00000034380)	SPEG (ENSSTOG00000012359) #34	DES (ENSSTOG00000012352) #35	DNPEP (ENSSTOG00000011546) #36	ENSSTOG00000011538 #37	PTPRN (ENSSTOG00000011522)
Alpin marmot	MODERN SPECIES	8	NYAP2 (ENSMMMG00000021319)	DOCK10 (ENSMMMG00000021225) #8	CUL3 (ENSMMMG00000021201) #10	FAM124B (ENSMMMG00000021195) #11	SERPINE2 (ENSMMMG00000021184) #12	MRPL44 (ENSMMMG00000021181) #13	WDFY1 (ENSMMMG00000021171) #14	AP1S3 (ENSMMMG00000021152) #15	ENSMMMG00000021147	SCG2 (ENSMMMG00000021141) #16	ENSMMMG00000021118 #17	ENSMMMG00000021077 #18	MOGAT1 (ENSMMMG00000021057) #19	FARSB (ENSMMMG00000021043) #20	SGPP2 (ENSMMMG00000021025) #21	PAX3 (ENSMMMG00000021012) #22	EPHA4 (ENSMMMG00000020979) #23	SLC4A3 (ENSMMMG00000020946) #24	STK11IP (ENSMMMG00000020889) #25	INHA (ENSMMMG00000020884) #26	ENSMMMG00000020865 #27	ENSMMMG00000020857 #27	TMEM198 (ENSMMMG00000020837) #28	CHPF (ENSMMMG00000020826) #29	ASIC4 (ENSMMMG00000020805) #30	ENSMMMG00000020798 #31	GMPPA (ENSMMMG00000020792) #32	ENSMMMG00000020788 #33	ENSMMMG00000020764 #34	DES (ENSMMMG00000020720) #35	DNPEP (ENSMMMG00000020675) #36
Eurasian red squirrel	MODERN SPECIES	12	DOCK10 (ENSSVLG00005020380) #8	CCDC195 (ENSSVLG00005020142) #9	CUL3 (ENSSVLG00005019874) #10	FAM124B (ENSSVLG00005019800) #11	SERPINE2 (ENSSVLG00005019736) #12	MRPL44 (ENSSVLG00005019654) #13	WDFY1 (ENSSVLG00005019597) #14	AP1S3 (ENSSVLG00005019506) #15	SCG2 (ENSSVLG00005019303) #16	ENSSVLG00005019262 #17	ACSL3 (ENSSVLG00005019227) #18	MOGAT1 (ENSSVLG00005019130) #19	ENSSVLG00005019087	FARSB (ENSSVLG00005018907) #20	SGPP2 (ENSSVLG00005018824) #21	PAX3 (ENSSVLG00005018703) #22	EPHA4 (ENSSVLG00005018643) #23	ENSSVLG00005018616	SLC4A3 (ENSSVLG00005018586) #24	STK11IP (ENSSVLG00005018532) #25	INHA (ENSSVLG00005018491) #26	OBSL1 (ENSSVLG00005018410) #27	TMEM198 (ENSSVLG00005018351) #28	CHPF (ENSSVLG00005018279) #29	ASIC4 (ENSSVLG00005018052) #30	ENSSVLG00005017975	GMPPA (ENSSVLG00005017884) #32	ENSSVLG00005017859	SPEGNB (ENSSVLG00005017796)	SPEG (ENSSVLG00005017279) #34	DES (ENSSVLG00005017173) #35
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000157469 #8	ENSGT00850000133636 #9	ENSGT00940000155066 #10	ENSGT00590000083134.a.b #11	ENSGT00940000158424 #12	ENSGT00390000016956 #13	ENSGT00940000157731 #14	ENSGT00970000193372.b #15	ENSGT00390000010895 #16	ENSGT00390000013776 #17	ENSGT00940000155954.a #18	ENSGT01030000234582.e.a #19	ENSGT00530000063489.a #20	ENSGT00940000159500 #21	ENSGT00940000166595.a	ENSGT00940000156504 #22	ENSGT00940000156948.f #23	ENSGT00940000159765 #24	ENSGT00940000158471 #25	ENSGT00390000005935 #26	ENSGT00940000156702.b #27	ENSGT00390000016940.c.b #28	ENSGT01050000244857.B.b #29	ENSGT00940000159052 #30	ENSGT00940000157018 #32	ENSGT00940000161126 #34	ENSGT00940000155522 #35	ENSGT00390000003164 #36	ENSGT00390000008124 #37	ENSGT00940000154095.b.b	ENSGT00940000160220
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00890000139453.b	ENSGT00940000157469 #8	ENSGT00850000133636 #9	ENSGT00940000155066 #10	ENSGT00590000083134.a.b #11	ENSGT00940000158424 #12	ENSGT00390000016956 #13	ENSGT00940000157731 #14	ENSGT00970000193372.b #15	ENSGT00390000010895 #16	ENSGT00390000013776 #17	ENSGT00940000155954.a #18	ENSGT01030000234582.e.a #19	ENSGT00530000063489.a #20	ENSGT00940000159500 #21	ENSGT00940000156504 #22	ENSGT00940000156948.f #23	ENSGT00940000159765 #24	ENSGT00940000158471 #25	ENSGT00390000005935 #26	ENSGT00940000156702.b #27	ENSGT00390000016940.c.b #28	ENSGT01050000244857.B.b #29	ENSGT00940000159052 #30	ENSGT00940000157018 #32	ENSGT00940000161126 #34	ENSGT00940000155522 #35	ENSGT00390000003164 #36	ENSGT00390000008124 #37	ENSGT00940000154095.b.b	ENSGT00940000160220
Guinea pig	MODERN SPECIES	89	ENSCPOG00000031113	ENSCPOG00000031601	CUL3 (ENSCPOG00000005658) #10	FAM124B (ENSCPOG00000013457) #11	ENSCPOG00000031951	SERPINE2 (ENSCPOG00000002016) #12	MRPL44 (ENSCPOG00000026825) #13	WDFY1 (ENSCPOG00000033757) #14	AP1S3 (ENSCPOG00000040002) #15	SCG2 (ENSCPOG00000009801) #16	KCNE4 (ENSCPOG00000039960) #17	ACSL3 (ENSCPOG00000004250) #18	MOGAT1 (ENSCPOG00000013573) #19	FARSB (ENSCPOG00000013109) #20	SGPP2 (ENSCPOG00000002109) #21	PAX3 (ENSCPOG00000006276) #22	EPHA4 (ENSCPOG00000011048) #23	ENSCPOG00000026421	SLC4A3 (ENSCPOG00000012401) #24	STK11IP (ENSCPOG00000023776) #25	INHA (ENSCPOG00000004459) #26	OBSL1 (ENSCPOG00000009420) #27	ENSCPOG00000034600 #28	CHPF (ENSCPOG00000024521) #29	ASIC4 (ENSCPOG00000021247) #30	GMPPA (ENSCPOG00000002466) #32	ENSCPOG00000002460 #34	DES (ENSCPOG00000002458) #35	DNPEP (ENSCPOG00000002790) #36	PTPRN (ENSCPOG00000004612)	DNAJB2 (ENSCPOG00000004607)
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00890000139453.b	ENSGT00940000157469 #8	ENSGT00850000133636 #9	ENSGT00940000155066 #10	ENSGT00590000083134.a.b #11	ENSGT00940000158424 #12	ENSGT00390000016956 #13	ENSGT00940000157731 #14	ENSGT00970000193372.b #15	ENSGT00390000010895 #16	ENSGT00390000013776 #17	ENSGT00940000155954.a #18	ENSGT01030000234582.e.a #19	ENSGT00530000063489.a #20	ENSGT00940000159500 #21	ENSGT00940000156504 #22	ENSGT00940000156948.f #23	ENSGT00940000159765 #24	ENSGT00940000158471 #25	ENSGT00390000005935 #26	ENSGT00940000156702.b #27	ENSGT00390000016940.c.b #28	ENSGT01050000244857.B.b #29	ENSGT00940000159052 #30	ENSGT00940000157018 #32	ENSGT00940000161126 #34	ENSGT00940000155522 #35	ENSGT00390000003164 #36	ENSGT00390000008124 #37	ENSGT00940000154095.b.b	ENSGT00940000160220
Degu	MODERN SPECIES	137	CCDC195 (ENSODEG00000005812) #9	CUL3 (ENSODEG00000006176) #10	FAM124B (ENSODEG00000005053) #11	SERPINE2 (ENSODEG00000005496) #12	MRPL44 (ENSODEG00000006415) #13	ENSODEG00000005654 #14	ENSODEG00000005677 #15	ENSODEG00000005931	SCG2 (ENSODEG00000005187) #16	ENSODEG00000005263 #17	ACSL3 (ENSODEG00000005596) #18	MOGAT1 (ENSODEG00000007108) #19	ENSODEG00000019468	FARSB (ENSODEG00000005451) #20	SGPP2 (ENSODEG00000005491) #21	PAX3 (ENSODEG00000007145) #22	ENSODEG00000007595	EPHA4 (ENSODEG00000007794) #23	ENSODEG00000019432	SLC4A3 (ENSODEG00000008058) #24	STK11IP (ENSODEG00000006046) #25	INHA (ENSODEG00000006794) #26	OBSL1 (ENSODEG00000007087) #27	TMEM198 (ENSODEG00000006314) #28	CHPF (ENSODEG00000006369) #29	ASIC4 (ENSODEG00000008072) #30	ENSODEG00000007610 #32	ENSODEG00000005456 #34	DES (ENSODEG00000005722) #35	DNPEP (ENSODEG00000007870) #36	ENSODEG00000006500 #37
Long-tailed chinchilla	MODERN SPECIES	160	DOCK10 (ENSCLAG00000007903) #8	CCDC195 (ENSCLAG00000008945) #9	CUL3 (ENSCLAG00000012794) #10	FAM124B (ENSCLAG00000009116) #11	SERPINE2 (ENSCLAG00000011483) #12	MRPL44 (ENSCLAG00000013842) #13	WDFY1 (ENSCLAG00000008029) #14	AP1S3 (ENSCLAG00000014092) #15	SCG2 (ENSCLAG00000017835) #16	KCNE4 (ENSCLAG00000010941) #17	ACSL3 (ENSCLAG00000016025) #18	ENSCLAG00000012328	MOGAT1 (ENSCLAG00000009613) #19	FARSB (ENSCLAG00000011954) #20	SGPP2 (ENSCLAG00000013450) #21	PAX3 (ENSCLAG00000013641) #22	EPHA4 (ENSCLAG00000007092) #23	SLC4A3 (ENSCLAG00000007516) #24	STK11IP (ENSCLAG00000011170) #25	INHA (ENSCLAG00000008900) #26	OBSL1 (ENSCLAG00000015313) #27	TMEM198 (ENSCLAG00000016019) #28	CHPF (ENSCLAG00000007193) #29	ASIC4 (ENSCLAG00000008013) #30	GMPPA (ENSCLAG00000007588) #32	SPEG (ENSCLAG00000008508) #34	DES (ENSCLAG00000013621) #35	DNPEP (ENSCLAG00000009422) #36	ENSCLAG00000007704 #37	PTPRN (ENSCLAG00000009207)	DNAJB2 (ENSCLAG00000014535)
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000050954	NYAP2 (ENSHGLG00000018926)	DOCK10 (ENSHGLG00000014092) #8	CUL3 (ENSHGLG00000013240) #10	FAM124B (ENSHGLG00000039344) #11	SERPINE2 (ENSHGLG00000008269) #12	MRPL44 (ENSHGLG00000044572) #13	ENSHGLG00000009329 #14	AP1S3 (ENSHGLG00000047492) #15	SCG2 (ENSHGLG00000021137) #16	KCNE4 (ENSHGLG00000046993) #17	ENSHGLG00000015953 #18	FARSB (ENSHGLG00000015965) #20	SGPP2 (ENSHGLG00000041213) #21	ENSHGLG00000032427	PAX3 (ENSHGLG00000017244) #22	ENSHGLG00000047135	ENSHGLG00000018932 #23	ENSHGLG00000037518	ENSHGLG00000046904	SLC4A3 (ENSHGLG00000015552) #24	STK11IP (ENSHGLG00000009647) #25	ENSHGLG00000015725 #26	OBSL1 (ENSHGLG00000018303) #27	TMEM198 (ENSHGLG00000015474) #28	CHPF (ENSHGLG00000041025) #29	ASIC4 (ENSHGLG00000018373) #30	GMPPA (ENSHGLG00000014929) #32	ENSHGLG00000032408	SPEG (ENSHGLG00000014231) #34	DES (ENSHGLG00000009885) #35