Tetrapoda	ANCESTRAL SPECIES	8													ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00530000064123	ENSGT00390000018038
Amniota	ANCESTRAL SPECIES	36	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830
Mammalia	ANCESTRAL SPECIES	64	ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00530000063861.a	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000154382.a.a	ENSGT00940000156166.b	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b	ENSGT00390000016177	ENSGT00940000160045	ENSGT00940000162025
Theria	ANCESTRAL SPECIES	41	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a
Eutheria	ANCESTRAL SPECIES	24	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a
Cetacea	ANCESTRAL SPECIES	1	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000160844.d	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000160844.d	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT00940000157061.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT00940000157061.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	74	RPF1 (ENSDLEG00000016438) #7	DNASE2B (ENSDLEG00000016427) #8	ENSDLEG00000016414 #9	SAMD13 (ENSDLEG00000016382) #10	PRKACB (ENSDLEG00000016303) #11	TTLL7 (ENSDLEG00000016218) #12	ENSDLEG00000016193 #13	ADGRL2 (ENSDLEG00000016098) #14	ADGRL4 (ENSDLEG00000016037) #15	ENSDLEG00000016033 #16	ENSDLEG00000016026 #17	PTGFR (ENSDLEG00000016018) #18	GIPC2 (ENSDLEG00000021613) #19	ENSDLEG00000021611 #20	DNAJB4 (ENSDLEG00000021609) #21	FUBP1 (ENSDLEG00000021599) #22	NEXN (ENSDLEG00000021585) #23	MIGA1 (ENSDLEG00000021579) #24	USP33 (ENSDLEG00000021570) #25	ZZZ3 (ENSDLEG00000021564) #26	AK5 (ENSDLEG00000021560) #27	PIGK (ENSDLEG00000021557) #28	ST6GALNAC5 (ENSDLEG00000021555) #29	ENSDLEG00000021554 #30	ENSDLEG00000021552 #31	ENSDLEG00000021550 #32	MSH4 (ENSDLEG00000021517) #33	ENSDLEG00000021496 #34	ACADM (ENSDLEG00000021490) #35	SLC44A5 (ENSDLEG00000021483) #36	LHX8 (ENSDLEG00000021479) #37
Beluga whale	MODERN SPECIES	62	ADGRE1 (ENSDLEG00000017725)	ENSDLEG00000017772	SH2D3A (ENSDLEG00000013440)	TRIP10 (ENSDLEG00000013465)	GPR108 (ENSDLEG00000013487)	C3 (ENSDLEG00000013524)	TNFSF14 (ENSDLEG00000013733)	CD70 (ENSDLEG00000013745)	ENSDLEG00000013797	ENSDLEG00000013807	TUBB4A (ENSDLEG00000013810)	ENSDLEG00000013828	ENSDLEG00000013892	CRB3 (ENSDLEG00000013951)	SLC25A23 (ENSDLEG00000013960)	KHSRP (ENSDLEG00000013980) ##22	ENSDLEG00000014038	GTF2F1 (ENSDLEG00000014057)	PSPN (ENSDLEG00000014081)	ALKBH7 (ENSDLEG00000014092)	CLPP (ENSDLEG00000014104)	ACER1 (ENSDLEG00000014123)	MLLT1 (ENSDLEG00000014165)	ACSBG2 (ENSDLEG00000014214)	RFX2 (ENSDLEG00000014418)	RANBP3 (ENSDLEG00000014487)	CAPS (ENSDLEG00000014540)	VMAC (ENSDLEG00000014555)	NDUFA11 (ENSDLEG00000014563)	NRTN (ENSDLEG00000014575)	DUS3L (ENSDLEG00000014609)
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	304	RPF1 (ENSMMNG00015007188) #7	DNASE2B (ENSMMNG00015007213) #8	ENSMMNG00015007239 #9	SAMD13 (ENSMMNG00015007257) #10	ENSMMNG00015007272	PRKACB (ENSMMNG00015007361) #11	TTLL7 (ENSMMNG00015007554) #12	ENSMMNG00015007678 #13	ADGRL2 (ENSMMNG00015007756) #14	ADGRL4 (ENSMMNG00015007843) #15	ENSMMNG00015007918 #16	PTGFR (ENSMMNG00015007927) #18	GIPC2 (ENSMMNG00015007950) #19	ENSMMNG00015007980 #20	DNAJB4 (ENSMMNG00015007989) #21	ENSMMNG00015008069 #22	NEXN (ENSMMNG00015008202) #23	MIGA1 (ENSMMNG00015008259) #24	USP33 (ENSMMNG00015008292) #25	ZZZ3 (ENSMMNG00015008405) #26	AK5 (ENSMMNG00015008449) #27	PIGK (ENSMMNG00015008474) #28	ST6GALNAC5 (ENSMMNG00015008499) #29	ENSMMNG00015008506	ST6GALNAC3 (ENSMMNG00015008517) #30	ENSMMNG00015008528 #31	ENSMMNG00015008536 #32	ENSMMNG00015008547	MSH4 (ENSMMNG00015008573) #33	ENSMMNG00015008600 #34	ACADM (ENSMMNG00015008645) #35
Narwhal	MODERN SPECIES	298	ENSMMNG00015017521	ADGRE1 (ENSMMNG00015017131)	VAV1 (ENSMMNG00015016847)	SH2D3A (ENSMMNG00015016722)	TRIP10 (ENSMMNG00015016642)	GPR108 (ENSMMNG00015016574)	C3 (ENSMMNG00015016478)	ENSMMNG00015016434	TNFSF14 (ENSMMNG00015016417)	CD70 (ENSMMNG00015016394)	TNFSF9 (ENSMMNG00015016367)	TUBB4A (ENSMMNG00015016340)	DENND1C (ENSMMNG00015016214)	CRB3 (ENSMMNG00015016166)	SLC25A23 (ENSMMNG00015016105)	KHSRP (ENSMMNG00015015884) #22	ENSMMNG00015015791	GTF2F1 (ENSMMNG00015015754)	PSPN (ENSMMNG00015015733)	ALKBH7 (ENSMMNG00015015715)	CLPP (ENSMMNG00015015685)	ACER1 (ENSMMNG00015015665)	MLLT1 (ENSMMNG00015015635)	ACSBG2 (ENSMMNG00015004690)	RFX2 (ENSMMNG00015004665)	RANBP3 (ENSMMNG00015004623)	CAPS (ENSMMNG00015004589)	VMAC (ENSMMNG00015004582)	NDUFA11 (ENSMMNG00015004575)	ENSMMNG00015004569	NRTN (ENSMMNG00015004563)
Vaquita	MODERN SPECIES	14	ENSPSNG00000007810	ADGRE1 (ENSPSNG00000007315)	VAV1 (ENSPSNG00000006761)	SH2D3A (ENSPSNG00000006525)	TRIP10 (ENSPSNG00000006457)	GPR108 (ENSPSNG00000006373)	C3 (ENSPSNG00000006189)	ENSPSNG00000006157	TNFSF14 (ENSPSNG00000006140)	ENSPSNG00000006109	ENSPSNG00000006095	TUBB4A (ENSPSNG00000005996)	DENND1C (ENSPSNG00000019480)	CRB3 (ENSPSNG00000019435)	SLC25A23 (ENSPSNG00000019375)	KHSRP (ENSPSNG00000019110) #22	ENSPSNG00000019013	GTF2F1 (ENSPSNG00000018932)	ALKBH7 (ENSPSNG00000018862)	CLPP (ENSPSNG00000018810)	ACER1 (ENSPSNG00000018752)	MLLT1 (ENSPSNG00000018623)	ACSBG2 (ENSPSNG00000018336)	RFX2 (ENSPSNG00000018253)	RANBP3 (ENSPSNG00000018114)	CAPS (ENSPSNG00000018005)	VMAC (ENSPSNG00000017974)	NDUFA11 (ENSPSNG00000017931)	NRTN (ENSPSNG00000017905)	DUS3L (ENSPSNG00000017805)	PRR22 (ENSPSNG00000017752)
Dolphin	MODERN SPECIES	1801															SLC25A41 (ENSTTRG00000010398)	KHSRP (ENSTTRG00000010390) #22	ENSTTRG00000010383	GTF2F1 (ENSTTRG00000010373)	PSPN (ENSTTRG00000010346)	ALKBH7 (ENSTTRG00000010344)	CLPP (ENSTTRG00000010335)
Sperm whale	MODERN SPECIES	11	PTPRS (ENSPCTG00005015250)	KDM4B (ENSPCTG00005014205)	ENSPCTG00005010047	MICOS13 (ENSPCTG00005009730)	HSD11B1L (ENSPCTG00005009491)	RPL36 (ENSPCTG00005009451)	LONP1 (ENSPCTG00005009046)	ENSPCTG00005008881	ENSPCTG00005008584	ENSPCTG00005008489	RFX2 (ENSPCTG00005016359)	ACSBG2 (ENSPCTG00005015989)	MLLT1 (ENSPCTG00005015937)	ACER1 (ENSPCTG00005015854)	CLPP (ENSPCTG00005015762)	KHSRP (ENSPCTG00005015259) #22	TNFSF9 (ENSPCTG00005015187)	CD70 (ENSPCTG00005015119)	TNFSF14 (ENSPCTG00005015045)	C3 (ENSPCTG00005014524)	GPR108 (ENSPCTG00005014379)	TRIP10 (ENSPCTG00005014182)	SH2D3A (ENSPCTG00005013915)	VAV1 (ENSPCTG00005012531)	ADGRE1 (ENSPCTG00005011511)	ENSPCTG00005011386	ENSPCTG00005011253	ENSPCTG00005011009	STXBP2 (ENSPCTG00005010873)	PCP2 (ENSPCTG00005010753)	PET100 (ENSPCTG00005010637)
Blue whale	MODERN SPECIES	14	ENSBMSG00010001459	ADGRE1 (ENSBMSG00010001551)	VAV1 (ENSBMSG00010002016)	SH2D3A (ENSBMSG00010002526)	TRIP10 (ENSBMSG00010002548)	GPR108 (ENSBMSG00010002591)	C3 (ENSBMSG00010002651)	TNFSF14 (ENSBMSG00010002703)	CD70 (ENSBMSG00010002710)	TNFSF9 (ENSBMSG00010002721)	TUBB4A (ENSBMSG00010002735)	DENND1C (ENSBMSG00010002755)	CRB3 (ENSBMSG00010002780)	SLC25A23 (ENSBMSG00010002792)	SLC25A41 (ENSBMSG00010002804)	KHSRP (ENSBMSG00010002829) #22	ENSBMSG00010002906	GTF2F1 (ENSBMSG00010002943)	PSPN (ENSBMSG00010002965)	ALKBH7 (ENSBMSG00010002973)	CLPP (ENSBMSG00010002982)	ACER1 (ENSBMSG00010002999)	MLLT1 (ENSBMSG00010003015)	ACSBG2 (ENSBMSG00010003047)	RFX2 (ENSBMSG00010003099)	RANBP3 (ENSBMSG00010003161)	CAPS (ENSBMSG00010003225)	VMAC (ENSBMSG00010003235)	NDUFA11 (ENSBMSG00010003243)	NRTN (ENSBMSG00010003262)	DUS3L (ENSBMSG00010003289)
Pecora	ANCESTRAL SPECIES		ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000013324 ##13	ADGRE1 (ENSCHYG00000013389)	VAV1 (ENSCHYG00000013476)	SH2D3A (ENSCHYG00000014306)	TRIP10 (ENSCHYG00000014436)	GPR108 (ENSCHYG00000014861)	C3 (ENSCHYG00000015491)	TNFSF14 (ENSCHYG00000016323)	CD70 (ENSCHYG00000016394)	ENSCHYG00000016453	ENSCHYG00000016483	TUBB4A (ENSCHYG00000016548)	DENND1C (ENSCHYG00000016610)	CRB3 (ENSCHYG00000016801)	SLC25A23 (ENSCHYG00000016841)	KHSRP (ENSCHYG00000017189) #22	ENSCHYG00000019841	PSPN (ENSCHYG00000019928)	ALKBH7 (ENSCHYG00000019961)	CLPP (ENSCHYG00000020020)	ACER1 (ENSCHYG00000020198)	MLLT1 (ENSCHYG00000020253)	ACSBG2 (ENSCHYG00000020499)	ENSCHYG00000020848	RFX2 (ENSCHYG00000020941)	RANBP3 (ENSCHYG00000021150)	CAPS (ENSCHYG00000021783)	VMAC (ENSCHYG00000021843)	NDUFA11 (ENSCHYG00000021871)	ENSCHYG00000021955	NRTN (ENSCHYG00000021980)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
Bovidae	ANCESTRAL SPECIES		ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a.d	ENSGT01060000248544.a.a.b.a.a.c	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000162714
Rambouillet Sheep	MODERN SPECIES	21	TRIP10 (ENSOARG00020016180)	GPR108 (ENSOARG00020016672)	C3 (ENSOARG00020016763)	ENSOARG00020016803	ENSOARG00020016859	ENSOARG00020017608	ENSOARG00020018946	CD70 (ENSOARG00020019022)	ENSOARG00020019063	ENSOARG00020019106	TUBB4A (ENSOARG00020019161)	DENND1C (ENSOARG00020019197)	CRB3 (ENSOARG00020019269)	SLC25A23 (ENSOARG00020019333)	SLC25A41 (ENSOARG00020019425)	KHSRP (ENSOARG00020019494) #22	GTF2F1 (ENSOARG00020019647)	PSPN (ENSOARG00020019711)	ALKBH7 (ENSOARG00020019744)	CLPP (ENSOARG00020019811)	ACER1 (ENSOARG00020019869)	MLLT1 (ENSOARG00020019921)	ENSOARG00020020028	ACSBG2 (ENSOARG00020020054)	RFX2 (ENSOARG00020020257)	RANBP3 (ENSOARG00020020564)	CAPS (ENSOARG00020020769)	VMAC (ENSOARG00020020817)	NDUFA11 (ENSOARG00020020850)	ENSOARG00020020891	NRTN (ENSOARG00020020907)
Goat	DUPLICATION
Goat	MODERN SPECIES	22	ENSCHIG00000012566 #7	DNASE2B (ENSCHIG00000018531) #8	ENSCHIG00000025541 #9	ENSCHIG00000014514	PRKACB (ENSCHIG00000024391) #11	TTLL7 (ENSCHIG00000017102) #12	ADGRL2 (ENSCHIG00000018750) #14	ENSCHIG00000001046	ENSCHIG00000011439	ADGRL4 (ENSCHIG00000020032) #15	IFI44 (ENSCHIG00000012676) #16	IFI44L (ENSCHIG00000018536)	PTGFR (ENSCHIG00000012516) #18	GIPC2 (ENSCHIG00000023418) #19	DNAJB4 (ENSCHIG00000015815) #21	ENSCHIG00000013418 #22	NEXN (ENSCHIG00000016598) #23	MIGA1 (ENSCHIG00000009076) #24	ENSCHIG00000016989 #25	ZZZ3 (ENSCHIG00000016803) #26	AK5 (ENSCHIG00000025470) #27	PIGK (ENSCHIG00000002739) #28	ST6GALNAC5 (ENSCHIG00000016530) #29	ENSCHIG00000001204 #30	ASB17 (ENSCHIG00000001766)	MSH4 (ENSCHIG00000026340) #33	ENSCHIG00000013246 #34	ENSCHIG00000012888 #35	ENSCHIG00000001515	ENSCHIG00000013780 #35	SLC44A5 (ENSCHIG00000026769) #36
Goat	MODERN SPECIES	26	ENSCHIG00000026329	ADGRE1 (ENSCHIG00000021647)	VAV1 (ENSCHIG00000011155)	SH2D3A (ENSCHIG00000025393)	TRIP10 (ENSCHIG00000022584)	GPR108 (ENSCHIG00000009700)	C3 (ENSCHIG00000008320)	TNFSF14 (ENSCHIG00000020880)	ENSCHIG00000026611	ENSCHIG00000004302	TUBB4A (ENSCHIG00000020195)	DENND1C (ENSCHIG00000017569)	CRB3 (ENSCHIG00000023021)	SLC25A23 (ENSCHIG00000008013)	SLC25A41 (ENSCHIG00000017363)	KHSRP (ENSCHIG00000027053) #22	ENSCHIG00000011986	PSPN (ENSCHIG00000018638)	ALKBH7 (ENSCHIG00000024761)	CLPP (ENSCHIG00000023189)	ACER1 (ENSCHIG00000008361)	ENSCHIG00000016868	MLLT1 (ENSCHIG00000022842)	ACSBG2 (ENSCHIG00000016276)	RFX2 (ENSCHIG00000023052)	RANBP3 (ENSCHIG00000021064)	CAPS (ENSCHIG00000022459)	VMAC (ENSCHIG00000004574)	NDUFA11 (ENSCHIG00000021213)	PRR22 (ENSCHIG00000022206)	DUS3L (ENSCHIG00000021327)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
American bison	MODERN SPECIES	3349	ADGRE1 (ENSBBBG00000007466)	VAV1 (ENSBBBG00000020126)	SH2D3A (ENSBBBG00000020159)	TRIP10 (ENSBBBG00000005456)	ENSBBBG00000005466	C3 (ENSBBBG00000008781)	TNFSF14 (ENSBBBG00000007961)	CD70 (ENSBBBG00000020534)	ENSBBBG00000007050	TUBB4A (ENSBBBG00000000506)	ENSBBBG00000020590	DENND1C (ENSBBBG00000007187)	CRB3 (ENSBBBG00000020657)	SLC25A23 (ENSBBBG00000020672)	SLC25A41 (ENSBBBG00000020681)	KHSRP (ENSBBBG00000008202) #22	GTF2F1 (ENSBBBG00000020826)	ALKBH7 (ENSBBBG00000020847)	ENSBBBG00000008371	CLPP (ENSBBBG00000020882)	ENSBBBG00000005623	MLLT1 (ENSBBBG00000020959)	ACSBG2 (ENSBBBG00000021028)	RFX2 (ENSBBBG00000007387)	RANBP3 (ENSBBBG00000021259)	CAPS (ENSBBBG00000008402)	ENSBBBG00000021299	NDUFA11 (ENSBBBG00000021309)	ENSBBBG00000021316	NRTN (ENSBBBG00000021324)	DUS3L (ENSBBBG00000021385)
Bos	ANCESTRAL SPECIES	3	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
Hybrid Bos Indicus	MODERN SPECIES	26	VAV1 (ENSBIXG00005001021)	SH2D3A (ENSBIXG00005011216)	TRIP10 (ENSBIXG00005001055)	GPR108 (ENSBIXG00005011263)	C3 (ENSBIXG00005001069)	TNFSF14 (ENSBIXG00005011303)	CD70 (ENSBIXG00005011321)	TNFSF9 (ENSBIXG00005001080)	ENSBIXG00005001088	ENSBIXG00005011344	TUBB4A (ENSBIXG00005001091)	DENND1C (ENSBIXG00005011411)	CRB3 (ENSBIXG00005000466)	SLC25A23 (ENSBIXG00005011521)	SLC25A41 (ENSBIXG00005011565)	KHSRP (ENSBIXG00005011664) #22	GTF2F1 (ENSBIXG00005001151)	PSPN (ENSBIXG00005011696)	ALKBH7 (ENSBIXG00005011712)	CLPP (ENSBIXG00005011763)	ACER1 (ENSBIXG00005005477)	MLLT1 (ENSBIXG00005001179)	ACSBG2 (ENSBIXG00005001189)	ENSBIXG00005011901	RFX2 (ENSBIXG00005012097)	ENSBIXG00005000272	NDUFA11 (ENSBIXG00005012200)	ENSBIXG00005001267	NRTN (ENSBIXG00005012230)	DUS3L (ENSBIXG00005012323)	CATSPERD (ENSBIXG00005012388)
Cow	DUPLICATION
Cow	MODERN SPECIES	22	PRKACB (ENSBTAG00000011953) #11	TTLL7 (ENSBTAG00000003322) #12	ENSBTAG00000050554	ADGRL2 (ENSBTAG00000012305) #14	ENSBTAG00000053907	ENSBTAG00000052602	ENSBTAG00000011537	ENSBTAG00000005007	ADGRL4 (ENSBTAG00000019733) #15	IFI44 (ENSBTAG00000034349) #16	IFI44L (ENSBTAG00000030932)	PTGFR (ENSBTAG00000015902) #18	ENSBTAG00000050046	GIPC2 (ENSBTAG00000011733) #19	DNAJB4 (ENSBTAG00000021752) #21	FUBP1 (ENSBTAG00000008926) #22	NEXN (ENSBTAG00000008921) #23	MIGA1 (ENSBTAG00000031044) #24	USP33 (ENSBTAG00000020761) #25	ZZZ3 (ENSBTAG00000017419) #26	AK5 (ENSBTAG00000017411) #27	PIGK (ENSBTAG00000031012) #28	ST6GALNAC5 (ENSBTAG00000007309) #29	ENSBTAG00000055168	ENSBTAG00000050685 #30	ENSBTAG00000053587 #30	ASB17 (ENSBTAG00000005864)	MSH4 (ENSBTAG00000018448) #33	RABGGTB (ENSBTAG00000018447) #34	ACADM (ENSBTAG00000024240) #35	SLC44A5 (ENSBTAG00000001326) #36
Cow	MODERN SPECIES	26	VAV1 (ENSBTAG00000039160)	SH2D3A (ENSBTAG00000013857)	TRIP10 (ENSBTAG00000047424)	GPR108 (ENSBTAG00000017291)	C3 (ENSBTAG00000017280)	TNFSF14 (ENSBTAG00000012223)	CD70 (ENSBTAG00000009752)	TNFSF9 (ENSBTAG00000046266)	ENSBTAG00000054505	TUBB4A (ENSBTAG00000021013)	ENSBTAG00000051810	DENND1C (ENSBTAG00000031809)	CRB3 (ENSBTAG00000051530)	SLC25A23 (ENSBTAG00000003491)	SLC25A41 (ENSBTAG00000020017)	KHSRP (ENSBTAG00000021018) #22	GTF2F1 (ENSBTAG00000021016)	PSPN (ENSBTAG00000031794)	ALKBH7 (ENSBTAG00000025540)	CLPP (ENSBTAG00000014712)	ACER1 (ENSBTAG00000008095)	MLLT1 (ENSBTAG00000002277)	ENSBTAG00000049278	ACSBG2 (ENSBTAG00000009105)	RFX2 (ENSBTAG00000017661)	RANBP3 (ENSBTAG00000006070)	CAPS (ENSBTAG00000006069)	VMAC (ENSBTAG00000006067)	NDUFA11 (ENSBTAG00000019025)	FUT6 (ENSBTAG00000000414)	NRTN (ENSBTAG00000000413)
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	22	ENSBGRG00000001672	ENSBGRG00000001675	ADGRL2 (ENSBGRG00000001750) #14	ENSBGRG00000002001	ENSBGRG00000002036	ENSBGRG00000002049	ENSBGRG00000002057	ADGRL4 (ENSBGRG00000002075) #15	ENSBGRG00000002150 #16	IFI44L (ENSBGRG00000002173)	PTGFR (ENSBGRG00000002210) #18	ENSBGRG00000002223	GIPC2 (ENSBGRG00000002233) #19	ENSBGRG00000002253 #20	DNAJB4 (ENSBGRG00000002265) #21	ENSBGRG00000002312 #22	NEXN (ENSBGRG00000002452) #23	MIGA1 (ENSBGRG00000002510) #24	USP33 (ENSBGRG00000002824) #25	ZZZ3 (ENSBGRG00000002986) #26	AK5 (ENSBGRG00000003065) #27	PIGK (ENSBGRG00000003125) #28	ST6GALNAC5 (ENSBGRG00000003196) #29	ST6GALNAC3 (ENSBGRG00000003212) #30	ASB17 (ENSBGRG00000003233)	MSH4 (ENSBGRG00000003243) #33	ENSBGRG00000003269	RABGGTB (ENSBGRG00000003282) #34	ACADM (ENSBGRG00000003324) #35	SLC44A5 (ENSBGRG00000003447) #36	LHX8 (ENSBGRG00000003869) #37
Domestic yak	MODERN SPECIES	27	VAV1 (ENSBGRG00000025777)	SH2D3A (ENSBGRG00000025904)	TRIP10 (ENSBGRG00000025920)	GPR108 (ENSBGRG00000025958)	C3 (ENSBGRG00000025983)	TNFSF14 (ENSBGRG00000025997)	CD70 (ENSBGRG00000026005)	ENSBGRG00000026014	ENSBGRG00000026022	TUBB4A (ENSBGRG00000026030)	ENSBGRG00000000364	DENND1C (ENSBGRG00000000393)	CRB3 (ENSBGRG00000000409)	SLC25A23 (ENSBGRG00000000430)	SLC25A41 (ENSBGRG00000000480)	KHSRP (ENSBGRG00000000517) #22	GTF2F1 (ENSBGRG00000000661)	PSPN (ENSBGRG00000000694)	ALKBH7 (ENSBGRG00000000719)	CLPP (ENSBGRG00000000753)	ACER1 (ENSBGRG00000000765)	MLLT1 (ENSBGRG00000000789)	ENSBGRG00000000819	ACSBG2 (ENSBGRG00000000844)	RFX2 (ENSBGRG00000000923)	ENSBGRG00000000938	RANBP3 (ENSBGRG00000000978)	CAPS (ENSBGRG00000001193)	VMAC (ENSBGRG00000001217)	NDUFA11 (ENSBGRG00000001226)	ENSBGRG00000001243
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1724														ENSBMUG00000001646	DNAJB4 (ENSBMUG00000001614) #21	ENSBMUG00000001554 #22	NEXN (ENSBMUG00000001414) #23	MIGA1 (ENSBMUG00000001347) #24
Wild yak	MODERN SPECIES	1315						TNFSF14 (ENSBMUG00000000453)	CD70 (ENSBMUG00000000433)	ENSBMUG00000000418	ENSBMUG00000000397	ENSBMUG00000000375	TUBB4A (ENSBMUG00000000367)	DENND1C (ENSBMUG00000000321)	CRB3 (ENSBMUG00000000168)	SLC25A23 (ENSBMUG00000000133)	SLC25A41 (ENSBMUG00000026037)	KHSRP (ENSBMUG00000026034) #22	GTF2F1 (ENSBMUG00000026031)	PSPN (ENSBMUG00000026028)	ALKBH7 (ENSBMUG00000026025)	CLPP (ENSBMUG00000026023)	ACER1 (ENSBMUG00000026018)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	339	SAMD13 (ENSMMSG00000007874) #10	PRKACB (ENSMMSG00000007994) #11	TTLL7 (ENSMMSG00000009936) #12	ENSMMSG00000009973	ENSMMSG00000009992	ADGRL2 (ENSMMSG00000010108) #14	ENSMMSG00000010349	ENSMMSG00000010359	ADGRL4 (ENSMMSG00000010416) #15	ENSMMSG00000010598	PTGFR (ENSMMSG00000010621) #18	ENSMMSG00000010641	ENSMMSG00000010696	GIPC2 (ENSMMSG00000010713) #19	DNAJB4 (ENSMMSG00000010765) #21	ENSMMSG00000010797 #22	NEXN (ENSMMSG00000010876) #23	MIGA1 (ENSMMSG00000010968) #24	USP33 (ENSMMSG00000011272) #25	ZZZ3 (ENSMMSG00000011593) #26	AK5 (ENSMMSG00000011685) #27	PIGK (ENSMMSG00000011800) #28	ST6GALNAC5 (ENSMMSG00000011878) #29	ST6GALNAC3 (ENSMMSG00000011892) #30	ASB17 (ENSMMSG00000011928)	MSH4 (ENSMMSG00000011952) #33	RABGGTB (ENSMMSG00000012035) #34	ACADM (ENSMMSG00000012146) #35	SLC44A5 (ENSMMSG00000012388) #36	ENSMMSG00000012611	LHX8 (ENSMMSG00000012627) #37
Siberian musk deer	MODERN SPECIES	99	SH2D3A (ENSMMSG00000007295)	TRIP10 (ENSMMSG00000007373)	GPR108 (ENSMMSG00000007474)	C3 (ENSMMSG00000007580)	TNFSF14 (ENSMMSG00000007629)	CD70 (ENSMMSG00000007672)	ENSMMSG00000007708	ENSMMSG00000007741	TNFSF9 (ENSMMSG00000007760)	ENSMMSG00000007773	TUBB4A (ENSMMSG00000007812)	DENND1C (ENSMMSG00000007861)	ENSMMSG00000008095	SLC25A23 (ENSMMSG00000008146)	SLC25A41 (ENSMMSG00000008181)	KHSRP (ENSMMSG00000008232) #22	GTF2F1 (ENSMMSG00000008317)	PSPN (ENSMMSG00000008350)	ALKBH7 (ENSMMSG00000008382)	CLPP (ENSMMSG00000008431)	ACER1 (ENSMMSG00000008449)	MLLT1 (ENSMMSG00000008480)	ACSBG2 (ENSMMSG00000008549)	RFX2 (ENSMMSG00000008753)	ENSMMSG00000008883	RANBP3 (ENSMMSG00000008928)	CAPS (ENSMMSG00000009082)	VMAC (ENSMMSG00000009134)	NDUFA11 (ENSMMSG00000009156)	NRTN (ENSMMSG00000009181)	ENSMMSG00000009212
Camelidae	ANCESTRAL SPECIES	11	ENSGT00390000002634.b #8	ENSGT00940000153229.B #9	ENSGT00910000147804	ENSGT00530000063936.b #10	ENSGT00940000161169 #11	ENSGT00940000159078 #12	ENSGT00940000156348.C #14	ENSGT00940000158252 #15	ENSGT00940000162964 #16	ENSGT00940000163189	ENSGT01030000234559.a.b #18	ENSGT00390000003420.a.b #19	ENSGT00940000156826 #21	ENSGT00940000160043	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00730000111176 #23	ENSGT00390000008565.b.b #24	ENSGT00940000157311 #25	ENSGT00390000005307 #26	ENSGT00940000155917 #27	ENSGT00940000156273 #28	ENSGT00940000157634 #29	ENSGT00940000159735 #30	ENSGT00390000018077	ENSGT00550000074897 #33	ENSGT00950000183128.B #34	ENSGT00940000158429 #35	ENSGT00940000156600 #36	ENSGT00940000156200.A #37
Alpaca	MODERN SPECIES	3072																ENSVPAG00000010837 #22
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	4	ENSCDRG00005010589 #9	ENSCDRG00005010571	SAMD13 (ENSCDRG00005010489) #10	ENSCDRG00005010452	PRKACB (ENSCDRG00005007007) #11	TTLL7 (ENSCDRG00005006729) #12	ENSCDRG00005006665	ENSCDRG00005015601	ADGRL2 (ENSCDRG00005015074) #14	ADGRL4 (ENSCDRG00005014755) #15	IFI44 (ENSCDRG00005014665) #16	IFI44L (ENSCDRG00005014623)	PTGFR (ENSCDRG00005014602) #18	GIPC2 (ENSCDRG00005014503) #19	DNAJB4 (ENSCDRG00005014458) #21	ENSCDRG00005013957 #22	NEXN (ENSCDRG00005013657) #23	MIGA1 (ENSCDRG00005013485) #24	USP33 (ENSCDRG00005013230) #25	ZZZ3 (ENSCDRG00005013030) #26	AK5 (ENSCDRG00005012861) #27	ENSCDRG00005012829	PIGK (ENSCDRG00005012684) #28	ST6GALNAC5 (ENSCDRG00005012633) #29	ST6GALNAC3 (ENSCDRG00005012552) #30	ASB17 (ENSCDRG00005012510)	MSH4 (ENSCDRG00005012261) #33	RABGGTB (ENSCDRG00005012036) #34	ACADM (ENSCDRG00005011717) #35	SLC44A5 (ENSCDRG00005011212) #36	LHX8 (ENSCDRG00005011024) #37
Arabian camel	MODERN SPECIES	14	ENSCDRG00005017166	ENSCDRG00005017246	ADGRE1 (ENSCDRG00005017351)	VAV1 (ENSCDRG00005017664)	SH2D3A (ENSCDRG00005017906)	TRIP10 (ENSCDRG00005017930)	GPR108 (ENSCDRG00005017978)	C3 (ENSCDRG00005018821)	TNFSF14 (ENSCDRG00005021938)	CD70 (ENSCDRG00005021939)	TUBB4A (ENSCDRG00005021940)	DENND1C (ENSCDRG00005021941)	CRB3 (ENSCDRG00005021942)	SLC25A23 (ENSCDRG00005021943)	SLC25A41 (ENSCDRG00005021944)	KHSRP (ENSCDRG00005021945) #22	ENSCDRG00005021946	GTF2F1 (ENSCDRG00005021947)	PSPN (ENSCDRG00005021948)	ALKBH7 (ENSCDRG00005021949)	CLPP (ENSCDRG00005021950)	ACER1 (ENSCDRG00005021951)	MLLT1 (ENSCDRG00005021952)	ACSBG2 (ENSCDRG00005021953)	RFX2 (ENSCDRG00005021955)	RANBP3 (ENSCDRG00005021957)	CAPS (ENSCDRG00005021958)	VMAC (ENSCDRG00005021959)	NDUFA11 (ENSCDRG00005021961)	ENSCDRG00005021962	NRTN (ENSCDRG00005021964)
Suina	ANCESTRAL SPECIES	16	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134
Chacoan peccary	MODERN SPECIES	770	ENSCWAG00000011207	ADGRE1 (ENSCWAG00000010899)	VAV1 (ENSCWAG00000009741)	SH2D3A (ENSCWAG00000009467)	TRIP10 (ENSCWAG00000009207)	GPR108 (ENSCWAG00000009134)	C3 (ENSCWAG00000008783)	TNFSF14 (ENSCWAG00000008731)	CD70 (ENSCWAG00000008679)	TNFSF9 (ENSCWAG00000008641)	TUBB4A (ENSCWAG00000008574)	DENND1C (ENSCWAG00000008209)	CRB3 (ENSCWAG00000008071)	SLC25A23 (ENSCWAG00000007971)	SLC25A41 (ENSCWAG00000007889)	KHSRP (ENSCWAG00000017455) #22	GTF2F1 (ENSCWAG00000017421)	PSPN (ENSCWAG00000017389)	ALKBH7 (ENSCWAG00000017346)	CLPP (ENSCWAG00000017303)	ACER1 (ENSCWAG00000017254)	MLLT1 (ENSCWAG00000017206)	ACSBG2 (ENSCWAG00000016992)	RFX2 (ENSCWAG00000016768)	RANBP3 (ENSCWAG00000016644)	CAPS (ENSCWAG00000016575)	VMAC (ENSCWAG00000016538)	NDUFA11 (ENSCWAG00000016483)	ENSCWAG00000016466	NRTN (ENSCWAG00000016434)	DUS3L (ENSCWAG00000016362)
Pig	MODERN SPECIES	10	VAV1 (ENSSSCG00000013553)	SH2D3A (ENSSSCG00000022380)	TRIP10 (ENSSSCG00000013554)	GPR108 (ENSSSCG00000013552)	C3 (ENSSSCG00000013551)	TNFSF14 (ENSSSCG00000026695)	ENSSSCG00000024275	ENSSSCG00000060067	CD70 (ENSSSCG00000031115)	TNFSF9 (ENSSSCG00000022370)	TUBB4A (ENSSSCG00000013545)	DENND1C (ENSSSCG00000013546)	CRB3 (ENSSSCG00000051897)	SLC25A23 (ENSSSCG00000013550)	SLC25A41 (ENSSSCG00000032785)	KHSRP (ENSSSCG00000013538) #22	GTF2F1 (ENSSSCG00000013539)	ALKBH7 (ENSSSCG00000024254)	PSPN (ENSSSCG00000013540)	CLPP (ENSSSCG00000038079)	ACER1 (ENSSSCG00000023969)	MLLT1 (ENSSSCG00000013534)	ACSBG2 (ENSSSCG00000013536)	RFX2 (ENSSSCG00000035403)	RANBP3 (ENSSSCG00000013533)	CAPS (ENSSSCG00000013532)	VMAC (ENSSSCG00000031764)	NDUFA11 (ENSSSCG00000027307)	ENSSSCG00000013530	NRTN (ENSSSCG00000033413)	DUS3L (ENSSSCG00000040968)
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588.w	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00950000182993.A.a	ENSGT00550000075134
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00940000164108.b	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588.w	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00950000182993.A.a	ENSGT00550000075134
Greater horseshoe bat	MODERN SPECIES	9	ENSRFEG00010013846	ENSRFEG00010010435	ADGRE1 (ENSRFEG00010011348)	VAV1 (ENSRFEG00010012766)	SH2D3A (ENSRFEG00010012944)	TRIP10 (ENSRFEG00010013094)	GPR108 (ENSRFEG00010013722)	C3 (ENSRFEG00010013799)	TNFSF14 (ENSRFEG00010014416)	CD70 (ENSRFEG00010014470)	TNFSF9 (ENSRFEG00010014511)	TUBB4A (ENSRFEG00010014530)	DENND1C (ENSRFEG00010014718)	CRB3 (ENSRFEG00010014851)	SLC25A23 (ENSRFEG00010014934)	KHSRP (ENSRFEG00010015266) #22	ENSRFEG00010015355	GTF2F1 (ENSRFEG00010015531)	PSPN (ENSRFEG00010015585)	ALKBH7 (ENSRFEG00010015638)	CLPP (ENSRFEG00010015771)	ACER1 (ENSRFEG00010015824)	MLLT1 (ENSRFEG00010015888)	ENSRFEG00010015957	ENSRFEG00010016123	RFX2 (ENSRFEG00010016196)	RANBP3 (ENSRFEG00010016304)	CAPS (ENSRFEG00010016476)	VMAC (ENSRFEG00010016520)	NDUFA11 (ENSRFEG00010016557)	NRTN (ENSRFEG00010016659)
Microbat	MODERN SPECIES	1278				ENSMLUG00000007422	ENSMLUG00000025160	ENSMLUG00000027221	TNFSF14 (ENSMLUG00000003450)	CD70 (ENSMLUG00000007323)	ENSMLUG00000022835	TNFSF9 (ENSMLUG00000011161)	TUBB4A (ENSMLUG00000015607)	DENND1C (ENSMLUG00000015589)	CRB3 (ENSMLUG00000015582)	SLC25A41 (ENSMLUG00000015564)	SLC25A23 (ENSMLUG00000015572)	KHSRP (ENSMLUG00000015543) #22	GTF2F1 (ENSMLUG00000015530)	PSPN (ENSMLUG00000015527)	CLPP (ENSMLUG00000007981)	ENSMLUG00000014237	MLLT1 (ENSMLUG00000014230)	ACSBG2 (ENSMLUG00000014216)	RFX2 (ENSMLUG00000017439)	ENSMLUG00000014888	CAPS (ENSMLUG00000014884)	VMAC (ENSMLUG00000014883)	NDUFA11 (ENSMLUG00000027443)	NRTN (ENSMLUG00000007178)	DUS3L (ENSMLUG00000007159)	PRR22 (ENSMLUG00000023220)	CATSPERD (ENSMLUG00000001114)
Megabat	MODERN SPECIES	480										TNFSF9 (ENSPVAG00000007259)	TUBB4A (ENSPVAG00000007258)	DENND1C (ENSPVAG00000007256)	CRB3 (ENSPVAG00000007255)	SLC25A23 (ENSPVAG00000007253)	ENSPVAG00000007252	KHSRP (ENSPVAG00000007251) #22	ENSPVAG00000007250	GTF2F1 (ENSPVAG00000007249)	PSPN (ENSPVAG00000007247)	ALKBH7 (ENSPVAG00000007246)	CLPP (ENSPVAG00000007243)	ACER1 (ENSPVAG00000007242)	MLLT1 (ENSPVAG00000007239)
Equus	ANCESTRAL SPECIES	3	ENSGT01100000263525.a.b.b.c.b	ENSGT00940000153231.B #7	ENSGT00390000002634.b #8	ENSGT00940000153229.B #9	ENSGT00940000163788	ENSGT00940000161169 #11	ENSGT00940000159078 #12	ENSGT00940000156348.C #14	ENSGT00940000158252 #15	ENSGT00940000162964 #16	ENSGT00940000163189	ENSGT01030000234559.a.b #18	ENSGT00390000003420.a.b #19	ENSGT00950000185225 #20	ENSGT00940000156826 #21	ENSGT00940000156051 #22	ENSGT00730000111176 #23	ENSGT00390000008565.b.b #24	ENSGT00940000157311 #25	ENSGT00390000005307 #26	ENSGT00940000155917 #27	ENSGT00940000156273 #28	ENSGT00940000157634 #29	ENSGT00940000159735 #30	ENSGT00390000018077	ENSGT00550000074897 #33	ENSGT00950000183128.B #34	ENSGT00940000158429 #35	ENSGT00940000156600 #36	ENSGT00940000156200.A #37	ENSGT00940000153304.C
Donkey	MODERN SPECIES	7	ENSEASG00005014161 #9	DNASE2B (ENSEASG00005014162) #8	ENSEASG00005024895	PRKACB (ENSEASG00005014168) #11	TTLL7 (ENSEASG00005014170) #12	ADGRL2 (ENSEASG00005014270) #14	ENSEASG00005016942	ENSEASG00005016951	ADGRL4 (ENSEASG00005016959) #15	IFI44 (ENSEASG00005029542) #16	IFI44L (ENSEASG00005016968)	PTGFR (ENSEASG00005016973) #18	GIPC2 (ENSEASG00005016977) #19	ENSEASG00005016983 #20	DNAJB4 (ENSEASG00005016984) #21	ENSEASG00005016990 #22	NEXN (ENSEASG00005017015) #23	MIGA1 (ENSEASG00005017171) #24	USP33 (ENSEASG00005017173) #25	ZZZ3 (ENSEASG00005017174) #26	AK5 (ENSEASG00005017177) #27	PIGK (ENSEASG00005017179) #28	ST6GALNAC5 (ENSEASG00005017180) #29	ST6GALNAC3 (ENSEASG00005017181) #30	ASB17 (ENSEASG00005017184)	MSH4 (ENSEASG00005017189) #33	RABGGTB (ENSEASG00005017201) #34	ACADM (ENSEASG00005017206) #35	SLC44A5 (ENSEASG00005006854) #36	LHX8 (ENSEASG00005007771) #37	TYW3 (ENSEASG00005007776)
Horse	DUPLICATION
Horse	MODERN SPECIES	26	DNASE2B (ENSECAG00000020335) #8	ENSECAG00000028442	PRKACB (ENSECAG00000022585) #11	TTLL7 (ENSECAG00000024674) #12	ENSECAG00000057322	ENSECAG00000058679	ADGRL2 (ENSECAG00000024824) #14	ENSECAG00000038387	ADGRL4 (ENSECAG00000005896) #15	IFI44 (ENSECAG00000009020) #16	IFI44L (ENSECAG00000009618)	PTGFR (ENSECAG00000010558) #18	GIPC2 (ENSECAG00000010627) #19	ENSECAG00000038617 #20	DNAJB4 (ENSECAG00000010808) #21	FUBP1 (ENSECAG00000010867) #22	NEXN (ENSECAG00000015180) #23	MIGA1 (ENSECAG00000015731) #24	USP33 (ENSECAG00000017560) #25	ZZZ3 (ENSECAG00000011430) #26	AK5 (ENSECAG00000012901) #27	PIGK (ENSECAG00000014425) #28	ST6GALNAC5 (ENSECAG00000015310) #29	ST6GALNAC3 (ENSECAG00000026840) #30	ASB17 (ENSECAG00000016398)	MSH4 (ENSECAG00000017096) #33	RABGGTB (ENSECAG00000020309) #34	ACADM (ENSECAG00000021085) #35	ENSECAG00000048365	SLC44A5 (ENSECAG00000022156) #36	LHX8 (ENSECAG00000004881) #37
Horse	MODERN SPECIES	28	ENSECAG00000015885	ADGRE1 (ENSECAG00000017237)	VAV1 (ENSECAG00000014896)	SH2D3A (ENSECAG00000012075)	TRIP10 (ENSECAG00000017817)	GPR108 (ENSECAG00000014466)	C3 (ENSECAG00000057145)	TNFSF14 (ENSECAG00000017522)	ENSECAG00000058070	TNFSF9 (ENSECAG00000022714)	TUBB4A (ENSECAG00000037214)	DENND1C (ENSECAG00000010964)	CRB3 (ENSECAG00000010143)	SLC25A23 (ENSECAG00000020970)	SLC25A41 (ENSECAG00000018003)	KHSRP (ENSECAG00000018305) #22	ENSECAG00000016799	GTF2F1 (ENSECAG00000000246)	PSPN (ENSECAG00000001763)	ALKBH7 (ENSECAG00000023627)	CLPP (ENSECAG00000023054)	ACER1 (ENSECAG00000022733)	MLLT1 (ENSECAG00000015555)	ENSECAG00000029780	ENSECAG00000047643	ACSBG2 (ENSECAG00000017087)	RFX2 (ENSECAG00000020379)	RANBP3 (ENSECAG00000024789)	ENSECAG00000052631	ENSECAG00000059799	ENSECAG00000033689
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b.cc	ENSGT00940000154063.C.a.b.bc.a	ENSGT00940000154063.C.a.b.bc.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a.b	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125	ENSGT00950000182993.A.a
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b.cc	ENSGT00940000154063.C.a.b.bc.a	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a.b	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00950000182993.A.a	ENSGT00550000075134
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b.cc	ENSGT00940000154063.C.a.b.bc.a	ENSGT00940000154063.C.a.b.bc.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a.b	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00950000182993.A.a	ENSGT00550000075134
leopard	MODERN SPECIES	134						TNFSF14 (ENSPPRG00000013892)	CD70 (ENSPPRG00000013825)	TNFSF9 (ENSPPRG00000012095)	ENSPPRG00000011682	ENSPPRG00000011364	DENND1C (ENSPPRG00000011124)	CRB3 (ENSPPRG00000009994)	ENSPPRG00000008866	SLC25A23 (ENSPPRG00000008786)	SLC25A41 (ENSPPRG00000008078)	KHSRP (ENSPPRG00000008001) #22	GTF2F1 (ENSPPRG00000007816)	PSPN (ENSPPRG00000007687)	ALKBH7 (ENSPPRG00000007447)	ENSPPRG00000007143	ACER1 (ENSPPRG00000007111)	MLLT1 (ENSPPRG00000006767)	ENSPPRG00000006490	ACSBG2 (ENSPPRG00000006197)	RFX2 (ENSPPRG00000004939)	RANBP3 (ENSPPRG00000004053)	CAPS (ENSPPRG00000002279)	VMAC (ENSPPRG00000001830)	NDUFA11 (ENSPPRG00000001722)	NRTN (ENSPPRG00000000950)	DUS3L (ENSPPRG00000000633)
lion	DUPLICATION
lion	MODERN SPECIES	8	DNASE2B (ENSPLOG00000005726) #8	ENSPLOG00000005767 #9	SAMD13 (ENSPLOG00000005808) #10	ENSPLOG00000005835	ENSPLOG00000005852	PRKACB (ENSPLOG00000006004) #11	TTLL7 (ENSPLOG00000006225) #12	ENSPLOG00000006337	ADGRL2 (ENSPLOG00000006440) #14	ADGRL4 (ENSPLOG00000006736) #15	IFI44 (ENSPLOG00000006832) #16	IFI44L (ENSPLOG00000006859)	PTGFR (ENSPLOG00000006889) #18	GIPC2 (ENSPLOG00000006907) #19	DNAJB4 (ENSPLOG00000006942) #21	ENSPLOG00000007135 #22	NEXN (ENSPLOG00000007421) #23	MIGA1 (ENSPLOG00000007510) #24	USP33 (ENSPLOG00000007631) #25	ZZZ3 (ENSPLOG00000007879) #26	AK5 (ENSPLOG00000007957) #27	PIGK (ENSPLOG00000008099) #28	ST6GALNAC5 (ENSPLOG00000008185) #29	ST6GALNAC3 (ENSPLOG00000008256) #30	ENSPLOG00000008284	ASB17 (ENSPLOG00000008298)	MSH4 (ENSPLOG00000008330) #33	RABGGTB (ENSPLOG00000008437) #34	ACADM (ENSPLOG00000008502) #35	SLC44A5 (ENSPLOG00000008597) #36	LHX8 (ENSPLOG00000008855) #37
lion	MODERN SPECIES	2	OR2Z1 (ENSPLOG00000000490)	ENSPLOG00000000477	ENSPLOG00000000398	ADGRE1 (ENSPLOG00000000168)	VAV1 (ENSPLOG00000000054)	SH2D3A (ENSPLOG00000000042)	TRIP10 (ENSPLOG00000000029)	GPR108 (ENSPLOG00000008896)	TNFSF14 (ENSPLOG00000008844)	CD70 (ENSPLOG00000008810)	TUBB4A (ENSPLOG00000008766)	DENND1C (ENSPLOG00000008616)	CRB3 (ENSPLOG00000008561)	SLC25A23 (ENSPLOG00000008518)	SLC25A41 (ENSPLOG00000008462)	KHSRP (ENSPLOG00000008352) #22	GTF2F1 (ENSPLOG00000008314)	PSPN (ENSPLOG00000008290)	ALKBH7 (ENSPLOG00000008230)	CLPP (ENSPLOG00000008162)	ACER1 (ENSPLOG00000008130)	MLLT1 (ENSPLOG00000008040)	ENSPLOG00000007717	ACSBG2 (ENSPLOG00000007544)	RFX2 (ENSPLOG00000007424)	RANBP3 (ENSPLOG00000007325)	CAPS (ENSPLOG00000007257)	VMAC (ENSPLOG00000007244)	NDUFA11 (ENSPLOG00000007217)	NRTN (ENSPLOG00000007186)	DUS3L (ENSPLOG00000007145)
Cat	DUPLICATION
Cat	MODERN SPECIES	239	DNASE2B (ENSFCAG00000008789) #8	UOX (ENSFCAG00000024210) #9	ENSFCAG00000050042	SAMD13 (ENSFCAG00000045569) #10	ENSFCAG00000049478	PRKACB (ENSFCAG00000027890) #11	TTLL7 (ENSFCAG00000012519) #12	ENSFCAG00000033151	ADGRL2 (ENSFCAG00000025759) #14	ADGRL4 (ENSFCAG00000031487) #15	IFI44 (ENSFCAG00000022349) #16	IFI44L (ENSFCAG00000013210)	PTGFR (ENSFCAG00000004947) #18	GIPC2 (ENSFCAG00000033966) #19	DNAJB4 (ENSFCAG00000026143) #21	FUBP1 (ENSFCAG00000010330) #22	NEXN (ENSFCAG00000023913) #23	MIGA1 (ENSFCAG00000019216) #24	USP33 (ENSFCAG00000023180) #25	ZZZ3 (ENSFCAG00000001415) #26	AK5 (ENSFCAG00000001412) #27	PIGK (ENSFCAG00000025576) #28	ENSFCAG00000027990	ST6GALNAC5 (ENSFCAG00000024573) #29	ST6GALNAC3 (ENSFCAG00000014089) #30	ASB17 (ENSFCAG00000001053)	MSH4 (ENSFCAG00000039107) #33	RABGGTB (ENSFCAG00000015450) #34	ACADM (ENSFCAG00000026468) #35	SLC44A5 (ENSFCAG00000003245) #36	LHX8 (ENSFCAG00000031609) #37
Cat	MODERN SPECIES	1	ENSFCAG00000000243	ADGRE1 (ENSFCAG00000005054)	VAV1 (ENSFCAG00000005052)	SH2D3A (ENSFCAG00000026188)	TRIP10 (ENSFCAG00000005047)	ENSFCAG00000048073	GPR108 (ENSFCAG00000018222)	ENSFCAG00000046278	TNFSF14 (ENSFCAG00000005040)	CD70 (ENSFCAG00000028989)	TNFSF9 (ENSFCAG00000038600)	TUBB4A (ENSFCAG00000010269)	DENND1C (ENSFCAG00000012514)	CRB3 (ENSFCAG00000041058)	SLC25A41 (ENSFCAG00000025463)	KHSRP (ENSFCAG00000003731) #22	GTF2F1 (ENSFCAG00000012512)	PSPN (ENSFCAG00000043004)	ALKBH7 (ENSFCAG00000012510)	CLPP (ENSFCAG00000012509)	ACER1 (ENSFCAG00000040566)	MLLT1 (ENSFCAG00000023537)	ENSFCAG00000027464	ACSBG2 (ENSFCAG00000012505)	RFX2 (ENSFCAG00000012504)	RANBP3 (ENSFCAG00000012502)	ENSFCAG00000045490	NDUFA11 (ENSFCAG00000016347)	ENSFCAG00000025259	NRTN (ENSFCAG00000045492)	DUS3L (ENSFCAG00000027534)
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434
Canidae	ANCESTRAL SPECIES		ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434
Dingo	DUPLICATION
Dingo	MODERN SPECIES	172	ENSCAFG00020014324	PRKACB (ENSCAFG00020014330) #11	TTLL7 (ENSCAFG00020014357) #12	ADGRL2 (ENSCAFG00020014423) #14	ENSCAFG00020015022	ENSCAFG00020015032	ENSCAFG00020015044	ENSCAFG00020015047	ENSCAFG00020015060	ADGRL4 (ENSCAFG00020015088) #15	IFI44 (ENSCAFG00020015199) #16	ENSCAFG00020015203	PTGFR (ENSCAFG00020015211) #18	GIPC2 (ENSCAFG00020015229) #19	DNAJB4 (ENSCAFG00020015239) #21	ENSCAFG00020015251 #22	NEXN (ENSCAFG00020015289) #23	ENSCAFG00020015403 #24	ENSCAFG00020015435	USP33 (ENSCAFG00020015481) #25	ZZZ3 (ENSCAFG00020016935) #26	AK5 (ENSCAFG00020016941) #27	PIGK (ENSCAFG00020016959) #28	ENSCAFG00020016961 #29	ST6GALNAC3 (ENSCAFG00020016967) #30	ENSCAFG00020016981	ENSCAFG00020016983	ENSCAFG00020016987	ASB17 (ENSCAFG00020016989)	MSH4 (ENSCAFG00020017000) #33	ENSCAFG00020017061 #34
Dingo	MODERN SPECIES	112	ENSCAFG00020021878	ADGRE1 (ENSCAFG00020021872)	VAV1 (ENSCAFG00020021863)	SH2D3A (ENSCAFG00020021858)	TRIP10 (ENSCAFG00020021855)	GPR108 (ENSCAFG00020021851)	C3 (ENSCAFG00020019526)	TNFSF14 (ENSCAFG00020019380)	ENSCAFG00020019376	TNFSF9 (ENSCAFG00020019371)	TUBB4A (ENSCAFG00020019365)	DENND1C (ENSCAFG00020019317)	CRB3 (ENSCAFG00020019301)	SLC25A23 (ENSCAFG00020019295)	SLC25A41 (ENSCAFG00020019291)	KHSRP (ENSCAFG00020019133) #22	ENSCAFG00020019100	GTF2F1 (ENSCAFG00020019099)	PSPN (ENSCAFG00020019098)	ALKBH7 (ENSCAFG00020019096)	CLPP (ENSCAFG00020019094)	ACER1 (ENSCAFG00020019092)	MLLT1 (ENSCAFG00020019087)	ENSCAFG00020019056	ENSCAFG00020019051	ENSCAFG00020019050	ENSCAFG00020019048	RFX2 (ENSCAFG00020019038)	RANBP3 (ENSCAFG00020019018)	CAPS (ENSCAFG00020019013)	VMAC (ENSCAFG00020019007)
Dog	DUPLICATION
Dog	MODERN SPECIES	34	ENSCAFG00845001765	ENSCAFG00845001788 #10	PRKACB (ENSCAFG00845001925) #11	TTLL7 (ENSCAFG00845002099) #12	ADGRL2 (ENSCAFG00845002417) #14	ENSCAFG00845002648	ENSCAFG00845002670	ENSCAFG00845002681	ENSCAFG00845002693	ADGRL4 (ENSCAFG00845002794) #15	ENSCAFG00845003006 #16	PTGFR (ENSCAFG00845003039) #18	GIPC2 (ENSCAFG00845003104) #19	ENSCAFG00845003153	DNAJB4 (ENSCAFG00845003177) #21	FUBP1 (ENSCAFG00845003294) #22	NEXN (ENSCAFG00845003442) #23	MIGA1 (ENSCAFG00845003565) #24	ENSCAFG00845003679	USP33 (ENSCAFG00845003748) #25	ZZZ3 (ENSCAFG00845003880) #26	AK5 (ENSCAFG00845003950) #27	PIGK (ENSCAFG00845004001) #28	ST6GALNAC5 (ENSCAFG00845004073) #29	ST6GALNAC3 (ENSCAFG00845004129) #30	ASB17 (ENSCAFG00845004158)	ENSCAFG00845004172 #33	ENSCAFG00845004180	RABGGTB (ENSCAFG00845004191) #34	ACADM (ENSCAFG00845004219) #35	SLC44A5 (ENSCAFG00845004401) #36
Dog	MODERN SPECIES	12	EMR4 (ENSCAFG00845007349)	ADGRE1 (ENSCAFG00845007962)	VAV1 (ENSCAFG00845008896)	SH2D3A (ENSCAFG00845009408)	TRIP10 (ENSCAFG00845009583)	GPR108 (ENSCAFG00845009759)	C3 (ENSCAFG00845010104)	TNFSF14 (ENSCAFG00845010429)	CD70 (ENSCAFG00845010526)	ENSCAFG00845010584	TUBB4A (ENSCAFG00845010611)	DENND1C (ENSCAFG00845010702)	CRB3 (ENSCAFG00845010829)	SLC25A23 (ENSCAFG00845010879)	SLC25A41 (ENSCAFG00845010943)	KHSRP (ENSCAFG00845011000) #22	ENSCAFG00845011160	GTF2F1 (ENSCAFG00845011192)	PSPN (ENSCAFG00845011239)	ALKBH7 (ENSCAFG00845011262)	CLPP (ENSCAFG00845011300)	ACER1 (ENSCAFG00845011353)	MLLT1 (ENSCAFG00845011430)	ENSCAFG00845011637	ACSBG2 (ENSCAFG00845011716)	RFX2 (ENSCAFG00845011818)	RANBP3 (ENSCAFG00845012047)	CAPS (ENSCAFG00845012225)	NDUFA11 (ENSCAFG00845012269)	FUT5 (ENSCAFG00845012290)	NRTN (ENSCAFG00845012314)
Red fox	DUPLICATION
Red fox	MODERN SPECIES	50	ENSVVUG00000030071	SAMD13 (ENSVVUG00000030070) #10	ENSVVUG00000030069	PRKACB (ENSVVUG00000030067) #11	TTLL7 (ENSVVUG00000030065) #12	ENSVVUG00000030058	ENSVVUG00000030049	ADGRL2 (ENSVVUG00000030043) #14	ENSVVUG00000030036	ADGRL4 (ENSVVUG00000030026) #15	IFI44 (ENSVVUG00000030023) #16	IFI44L (ENSVVUG00000030022)	PTGFR (ENSVVUG00000030021) #18	ENSVVUG00000030017	DNAJB4 (ENSVVUG00000030015) #21	ENSVVUG00000030003 #22	NEXN (ENSVVUG00000029984) #23	ENSVVUG00000029978	MIGA1 (ENSVVUG00000029976) #24	USP33 (ENSVVUG00000029966) #25	ENSVVUG00000029962 #26	AK5 (ENSVVUG00000029950) #27	ENSVVUG00000029945	PIGK (ENSVVUG00000029941) #28	ENSVVUG00000029936	ST6GALNAC5 (ENSVVUG00000029930) #29	ST6GALNAC3 (ENSVVUG00000029918) #30	ENSVVUG00000029915	ENSVVUG00000029912	ASB17 (ENSVVUG00000029911)	MSH4 (ENSVVUG00000029903) #33
Red fox	MODERN SPECIES	278	ADGRE1 (ENSVVUG00000015900)	VAV1 (ENSVVUG00000016047)	SH2D3A (ENSVVUG00000020490)	TRIP10 (ENSVVUG00000020538)	GPR108 (ENSVVUG00000022222)	C3 (ENSVVUG00000022719)	TNFSF14 (ENSVVUG00000026672)	CD70 (ENSVVUG00000026679)	ENSVVUG00000026681	ENSVVUG00000026683	ENSVVUG00000026690	DENND1C (ENSVVUG00000026697)	CRB3 (ENSVVUG00000026716)	SLC25A23 (ENSVVUG00000026718)	SLC25A41 (ENSVVUG00000026725)	KHSRP (ENSVVUG00000026737) #22	ENSVVUG00000026889	GTF2F1 (ENSVVUG00000026891)	PSPN (ENSVVUG00000026892)	ALKBH7 (ENSVVUG00000026894)	CLPP (ENSVVUG00000026895)	ACER1 (ENSVVUG00000026897)	MLLT1 (ENSVVUG00000026899)	ENSVVUG00000026901	ACSBG2 (ENSVVUG00000026905)	RFX2 (ENSVVUG00000026908)	RANBP3 (ENSVVUG00000026909)	VMAC (ENSVVUG00000026915)	NDUFA11 (ENSVVUG00000026918)
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a.d	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00950000182993.A.a
Ferret	DUPLICATION
Ferret	MODERN SPECIES	225						ENSMPUG00000010721	ADGRL2 (ENSMPUG00000010732) #14	ENSMPUG00000010743	ADGRL4 (ENSMPUG00000010747) #15	IFI44 (ENSMPUG00000010752) #16	IFI44L (ENSMPUG00000010755)	PTGFR (ENSMPUG00000010786) #18	ENSMPUG00000010788	GIPC2 (ENSMPUG00000010791) #19	DNAJB4 (ENSMPUG00000010794) #21	ENSMPUG00000010799 #22	NEXN (ENSMPUG00000010808) #23	MIGA1 (ENSMPUG00000010812) #24	USP33 (ENSMPUG00000010819) #25	ZZZ3 (ENSMPUG00000010824) #26	AK5 (ENSMPUG00000010829) #27	PIGK (ENSMPUG00000010835) #28	ST6GALNAC5 (ENSMPUG00000010840) #29	ST6GALNAC3 (ENSMPUG00000010844) #30	ASB17 (ENSMPUG00000010846)	MSH4 (ENSMPUG00000010849) #33	RABGGTB (ENSMPUG00000010892) #34	ACADM (ENSMPUG00000010897) #35	SLC44A5 (ENSMPUG00000010951) #36	LHX8 (ENSMPUG00000010963) #37	TYW3 (ENSMPUG00000010967)
Ferret	MODERN SPECIES	326	ADGRE1 (ENSMPUG00000007088)	VAV1 (ENSMPUG00000007069)	SH2D3A (ENSMPUG00000007030)	GPR108 (ENSMPUG00000007018)	TRIP10 (ENSMPUG00000007008)	ENSMPUG00000019706	C3 (ENSMPUG00000006984)	TNFSF14 (ENSMPUG00000006977)	CD70 (ENSMPUG00000006973)	TNFSF9 (ENSMPUG00000006964)	TUBB4A (ENSMPUG00000006958)	DENND1C (ENSMPUG00000006946)	CRB3 (ENSMPUG00000006930)	SLC25A23 (ENSMPUG00000006918)	SLC25A41 (ENSMPUG00000006890)	KHSRP (ENSMPUG00000006615) #22	ENSMPUG00000006584	GTF2F1 (ENSMPUG00000006566)	CLPP (ENSMPUG00000006553)	ACER1 (ENSMPUG00000006546)	MLLT1 (ENSMPUG00000006527)	ENSMPUG00000006513	ACSBG2 (ENSMPUG00000006350)	RFX2 (ENSMPUG00000006329)	RANBP3 (ENSMPUG00000006306)	ENSMPUG00000019705	CAPS (ENSMPUG00000006269)	VMAC (ENSMPUG00000006261)	NDUFA11 (ENSMPUG00000006200)	DUS3L (ENSMPUG00000006188)	CATSPERD (ENSMPUG00000006175)
American mink	DUPLICATION
American mink	MODERN SPECIES	157													PF2R (ENSNVIG00000009670) #18	GIPC2 (ENSNVIG00000009692) #19	DNAJB4 (ENSNVIG00000009715) #21	ENSNVIG00000009724 #22	NEXN (ENSNVIG00000009791) #23	MIGA1 (ENSNVIG00000009835) #24	USP33 (ENSNVIG00000009922) #25	ZZZ3 (ENSNVIG00000010036) #26	AK5 (ENSNVIG00000010119) #27	PIGK (ENSNVIG00000010172) #28	ST6GALNAC5 (ENSNVIG00000010229) #29	ST6GALNAC3 (ENSNVIG00000010253) #30	ASB17 (ENSNVIG00000010286)	MSH4 (ENSNVIG00000010302) #33	RABGGTB (ENSNVIG00000010334) #34	ACADM (ENSNVIG00000010380) #35	SLC44A5 (ENSNVIG00000010403) #36	LHX8 (ENSNVIG00000010449) #37	ENSNVIG00000010470
American mink	MODERN SPECIES	175	ENSNVIG00000016773	ADGRE1 (ENSNVIG00000016424)	VAV1 (ENSNVIG00000016115)	SH2D3A (ENSNVIG00000016062)	TRIP10 (ENSNVIG00000015973)	GPR108 (ENSNVIG00000015936)	C3 (ENSNVIG00000015877)	TNFSF14 (ENSNVIG00000015869)	CD70 (ENSNVIG00000015860)	TNFSF9 (ENSNVIG00000015851)	TUBB4A (ENSNVIG00000015845)	DENND1C (ENSNVIG00000015781)	CRB3 (ENSNVIG00000015751)	SLC25A23 (ENSNVIG00000015735)	SLC25A41 (ENSNVIG00000015722)	KHSRP (ENSNVIG00000015567) #22	ENSNVIG00000015514	GTF2F1 (ENSNVIG00000015498)	PSPN (ENSNVIG00000015490)	ENSNVIG00000015472	ALKBH7 (ENSNVIG00000015449)	ENSNVIG00000015434	ACER1 (ENSNVIG00000015426)	MLLT1 (ENSNVIG00000015422)	ENSNVIG00000015289	ACSBG2 (ENSNVIG00000015209)	RFX2 (ENSNVIG00000015069)	RANBP3 (ENSNVIG00000014853)	CAPS (ENSNVIG00000014785)	VMAC (ENSNVIG00000014779)	NDUFA11 (ENSNVIG00000014768)
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434
Ursus	ANCESTRAL SPECIES	16	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	170	DNASE2B (ENSUMAG00000002646) #8	ENSUMAG00000002660 #9	SAMD13 (ENSUMAG00000002672) #10	ENSUMAG00000002678	ENSUMAG00000002683	PRKACB (ENSUMAG00000002686) #11	TTLL7 (ENSUMAG00000002708) #12	ADGRL2 (ENSUMAG00000003188) #14	ENSUMAG00000005927	ADGRL4 (ENSUMAG00000005936) #15	IFI44 (ENSUMAG00000005948) #16	IFI44L (ENSUMAG00000005961)	PTGFR (ENSUMAG00000005971) #18	GIPC2 (ENSUMAG00000005998) #19	DNAJB4 (ENSUMAG00000006009) #21	ENSUMAG00000006022 #22	NEXN (ENSUMAG00000006062) #23	MIGA1 (ENSUMAG00000006195) #24	USP33 (ENSUMAG00000006203) #25	ZZZ3 (ENSUMAG00000006219) #26	AK5 (ENSUMAG00000006235) #27	PIGK (ENSUMAG00000006280) #28	ST6GALNAC5 (ENSUMAG00000006283) #29	ENSUMAG00000006285	ENSUMAG00000006290 #30	ASB17 (ENSUMAG00000006293)	MSH4 (ENSUMAG00000006298) #33	ENSUMAG00000006342	RABGGTB (ENSUMAG00000006348) #34	ENSUMAG00000006364	ENSUMAG00000006369 #35
Polar bear	MODERN SPECIES	455	ENSUMAG00000012794	ENSUMAG00000012778	ADGRE1 (ENSUMAG00000012737)	VAV1 (ENSUMAG00000012729)	SH2D3A (ENSUMAG00000012716)	TRIP10 (ENSUMAG00000012655)	GPR108 (ENSUMAG00000012627)	C3 (ENSUMAG00000011442)	TNFSF14 (ENSUMAG00000011256)	CD70 (ENSUMAG00000011245)	ENSUMAG00000011240	TUBB4A (ENSUMAG00000011205)	DENND1C (ENSUMAG00000011179)	SLC25A23 (ENSUMAG00000011176)	SLC25A41 (ENSUMAG00000011173)	KHSRP (ENSUMAG00000011144) #22	ENSUMAG00000011130	ENSUMAG00000011125	ALKBH7 (ENSUMAG00000011121)	CLPP (ENSUMAG00000011118)	ACER1 (ENSUMAG00000011114)	MLLT1 (ENSUMAG00000011106)	ENSUMAG00000011083	ENSUMAG00000011074	ACSBG2 (ENSUMAG00000011013)	RFX2 (ENSUMAG00000010908)	RANBP3 (ENSUMAG00000010878)	CAPS (ENSUMAG00000010864)	NDUFA11 (ENSUMAG00000010857)	ENSUMAG00000010843	DUS3L (ENSUMAG00000010831)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	7520															DNAJB4 (ENSUAMG00000004915) #21	ENSUAMG00000004961 #22	NEXN (ENSUAMG00000005803) #23
American black bear	MODERN SPECIES	1088		VAV1 (ENSUAMG00000024146)	ENSUAMG00000024136	SH2D3A (ENSUAMG00000024134)	TRIP10 (ENSUAMG00000024128)	GPR108 (ENSUAMG00000024090)	C3 (ENSUAMG00000023143)	TNFSF14 (ENSUAMG00000023112)	CD70 (ENSUAMG00000023109)	TUBB4A (ENSUAMG00000023108)	ENSUAMG00000023107	ENSUAMG00000023104	CRB3 (ENSUAMG00000023103)	SLC25A23 (ENSUAMG00000023102)	SLC25A41 (ENSUAMG00000023101)	KHSRP (ENSUAMG00000023100) #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	11	RPF1 (ENSAMEG00000008531) #7	DNASE2B (ENSAMEG00000013581) #8	ENSAMEG00000013543 #9	ENSAMEG00000031257	SAMD13 (ENSAMEG00000026469) #10	PRKACB (ENSAMEG00000013506) #11	TTLL7 (ENSAMEG00000014783) #12	ADGRL2 (ENSAMEG00000006030) #14	ADGRL4 (ENSAMEG00000018239) #15	IFI44 (ENSAMEG00000018244) #16	IFI44L (ENSAMEG00000018246)	PTGFR (ENSAMEG00000026789) #18	ENSAMEG00000028883	GIPC2 (ENSAMEG00000007448) #19	DNAJB4 (ENSAMEG00000007441) #21	ENSAMEG00000007372 #22	NEXN (ENSAMEG00000007337) #23	MIGA1 (ENSAMEG00000007310) #24	USP33 (ENSAMEG00000007257) #25	ZZZ3 (ENSAMEG00000007243) #26	AK5 (ENSAMEG00000007231) #27	PIGK (ENSAMEG00000007202) #28	ST6GALNAC5 (ENSAMEG00000007197) #29	ST6GALNAC3 (ENSAMEG00000003652) #30	ASB17 (ENSAMEG00000003649)	ENSAMEG00000023957	MSH4 (ENSAMEG00000003606) #33	RABGGTB (ENSAMEG00000003584) #34	ACADM (ENSAMEG00000003560) #35	ENSAMEG00000028212	ENSAMEG00000025637
Giant Panda	MODERN SPECIES	14	ENSAMEG00000003987	ADGRE1 (ENSAMEG00000003896)	VAV1 (ENSAMEG00000007416)	SH2D3A (ENSAMEG00000007379)	TRIP10 (ENSAMEG00000007327)	GPR108 (ENSAMEG00000007302)	C3 (ENSAMEG00000007161)	TNFSF14 (ENSAMEG00000028779)	CD70 (ENSAMEG00000007138)	TNFSF9 (ENSAMEG00000024527)	TUBB4A (ENSAMEG00000029200)	DENND1C (ENSAMEG00000007101)	CRB3 (ENSAMEG00000007097)	SLC25A23 (ENSAMEG00000007035)	SLC25A41 (ENSAMEG00000007032)	KHSRP (ENSAMEG00000006978) #22	ENSAMEG00000006968	GTF2F1 (ENSAMEG00000006933)	PSPN (ENSAMEG00000006930)	ALKBH7 (ENSAMEG00000006925)	CLPP (ENSAMEG00000029863)	ACER1 (ENSAMEG00000023660)	MLLT1 (ENSAMEG00000006860)	ENSAMEG00000006856	ACSBG2 (ENSAMEG00000006804)	RFX2 (ENSAMEG00000007745)	CAPS (ENSAMEG00000007894)	VMAC (ENSAMEG00000007913)	RANBP3 (ENSAMEG00000007819)	ENSAMEG00000018817	NRTN (ENSAMEG00000028449)
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Euarchontoglires_A	ANCESTRAL SPECIES	24			ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Glires	ANCESTRAL SPECIES	25				ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000162419	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Kangaroo rat	MODERN SPECIES	383	Odf3l2 (ENSDORG00000029131)	Shc2 (ENSDORG00000001524)	C2cd4c (ENSDORG00000012207)	ENSDORG00000028256	Mier2 (ENSDORG00000008994)	Plpp2 (ENSDORG00000028750)	Vav1 (ENSDORG00000014409)	Trip10 (ENSDORG00000009210)	Gpr108 (ENSDORG00000009208)	C3 (ENSDORG00000009909)	Tnfsf14 (ENSDORG00000028843)	Tubb4a (ENSDORG00000030020)	ENSDORG00000029765	Crb3 (ENSDORG00000002452)	Slc25a41 (ENSDORG00000002448)	Khsrp (ENSDORG00000002447) #22	Gm17949 (ENSDORG00000002446)	Gtf2f1 (ENSDORG00000002445)	Pspn (ENSDORG00000002443)	Alkbh7 (ENSDORG00000002441)	Clpp (ENSDORG00000002435)	Acer1 (ENSDORG00000013614)	Mllt1 (ENSDORG00000006056)	Acsbg3 (ENSDORG00000026047)	Acsbg2 (ENSDORG00000024853)	Rfx2 (ENSDORG00000008083)	Ranbp3 (ENSDORG00000003144)	ENSDORG00000003143	Vmac (ENSDORG00000029939)	Ndufa11 (ENSDORG00000003140)	Dus3l (ENSDORG00000006754)
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00940000163125	ENSGT00390000012434
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00940000163125	ENSGT00390000012434
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00940000163125	ENSGT00390000012434
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00940000163125	ENSGT00390000012434
Cricetidae_B	ANCESTRAL SPECIES	27		ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00940000163125	ENSGT00390000012434
Northern American deer mouse	MODERN SPECIES	14	Vav1 (ENSPEMG00000015943)	ENSPEMG00000031058	Trip10 (ENSPEMG00000017394)	Gpr108 (ENSPEMG00000030315)	ENSPEMG00000001526	Tnfsf14 (ENSPEMG00000000292)	ENSPEMG00000015087	ENSPEMG00000011159	Cd70 (ENSPEMG00000015587)	Tnfsf9 (ENSPEMG00000020989)	Tubb4a (ENSPEMG00000028633)	Dennd1c (ENSPEMG00000023860)	Crb3 (ENSPEMG00000021919)	Slc25a23 (ENSPEMG00000021021)	Slc25a41 (ENSPEMG00000020675)	Khsrp (ENSPEMG00000022853) #22	Gm17949 (ENSPEMG00000026776)	Gtf2f1 (ENSPEMG00000011236)	Pspn (ENSPEMG00000008246)	Alkbh7 (ENSPEMG00000016536)	Clpp (ENSPEMG00000009546)	Acer1 (ENSPEMG00000021242)	Mllt1 (ENSPEMG00000020708)	Acsbg3 (ENSPEMG00000022840)	Acsbg2 (ENSPEMG00000014725)	Rfx2 (ENSPEMG00000021291)	Prr22 (ENSPEMG00000014824)	Dus3l (ENSPEMG00000020784)	Nrtn (ENSPEMG00000014960)	ENSPEMG00000031186	Ndufa11 (ENSPEMG00000020648)
Prairie vole	MODERN SPECIES	181				Vav1 (ENSMOCG00000021139)	Trip10 (ENSMOCG00000013943)	ENSMOCG00000018962	C3 (ENSMOCG00000008114)	Tnfsf14 (ENSMOCG00000016341)	Cd70 (ENSMOCG00000021343)	Tnfsf9 (ENSMOCG00000018705)	Tubb4a (ENSMOCG00000015551)	ENSMOCG00000001187	Crb3 (ENSMOCG00000000421)	Slc25a23 (ENSMOCG00000014701)	Slc25a41 (ENSMOCG00000013299)	Khsrp (ENSMOCG00000018305) #22	Gm17949 (ENSMOCG00000016801)	Gtf2f1 (ENSMOCG00000000296)	Pspn (ENSMOCG00000014015)	Alkbh7 (ENSMOCG00000004923)	Clpp (ENSMOCG00000015784)	Acer1 (ENSMOCG00000002295)	Mllt1 (ENSMOCG00000020318)	Acsbg3 (ENSMOCG00000008516)	Acsbg2 (ENSMOCG00000000050)	Rfx2 (ENSMOCG00000012338)	Prr22 (ENSMOCG00000007432)	Dus3l (ENSMOCG00000021796)	Nrtn (ENSMOCG00000015675)	ENSMOCG00000006283	ENSMOCG00000001594
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000018285.b	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00940000163125	ENSGT00390000012434
Golden Hamster	MODERN SPECIES	730	ENSMAUG00000007845	Adgre1 (ENSMAUG00000000651)	Vav1 (ENSMAUG00000021145)	Trip10 (ENSMAUG00000005828)	ENSMAUG00000020000	C3 (ENSMAUG00000013599)	Tnfsf14 (ENSMAUG00000020967)	ENSMAUG00000015229	Cd70 (ENSMAUG00000019101)	ENSMAUG00000021205	Tubb4a (ENSMAUG00000017901)	Dennd1c (ENSMAUG00000006409)	Crb3 (ENSMAUG00000019988)	ENSMAUG00000000871	Slc25a41 (ENSMAUG00000014724)	Khsrp (ENSMAUG00000018966) #22	Gm17949 (ENSMAUG00000018260)	ENSMAUG00000015346	Pspn (ENSMAUG00000019121)	Alkbh7 (ENSMAUG00000000800)	Clpp (ENSMAUG00000021469)	Acer1 (ENSMAUG00000012781)	Mllt1 (ENSMAUG00000011374)	Acsbg3 (ENSMAUG00000014035)	Acsbg2 (ENSMAUG00000017399)	Rfx2 (ENSMAUG00000018587)	Prr22 (ENSMAUG00000003201)	Dus3l (ENSMAUG00000008347)	Nrtn (ENSMAUG00000001043)	Ndufa11 (ENSMAUG00000021572)	Vmac (ENSMAUG00000009455)
Chinese hamster chok1gshd	MODERN SPECIES	2	Pot1b (ENSCGRG00001024775)	Adgre4 (ENSCGRG00001002286)	Adgre1 (ENSCGRG00001013011)	Vav1 (ENSCGRG00001017169)	Trip10 (ENSCGRG00001018563)	Gpr108 (ENSCGRG00001020593)	C3 (ENSCGRG00001005133)	Tnfsf14 (ENSCGRG00001017618)	Cd70 (ENSCGRG00001022682)	ENSCGRG00001022936	Tubb4a (ENSCGRG00001001011)	Dennd1c (ENSCGRG00001020022)	Crb3 (ENSCGRG00001021736)	Slc25a23 (ENSCGRG00001023449)	Slc25a41 (ENSCGRG00001000917)	Khsrp (ENSCGRG00001011031) #22	Gm17949 (ENSCGRG00001006952)	Gtf2f1 (ENSCGRG00001006209)	Pspn (ENSCGRG00001017826)	Alkbh7 (ENSCGRG00001019380)	Clpp (ENSCGRG00001019808)	Acer1 (ENSCGRG00001016857)	Mllt1 (ENSCGRG00001018607)	Acsbg3 (ENSCGRG00001021403)	Acsbg2 (ENSCGRG00001001208)	Rfx2 (ENSCGRG00001008783)	Prr22 (ENSCGRG00001022202)	Dus3l (ENSCGRG00001023361)	Nrtn (ENSCGRG00001024492)	ENSCGRG00001008918	Ndufa11 (ENSCGRG00001023471)
Murinae	ANCESTRAL SPECIES	38			ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00390000012434	ENSGT00390000007212
Mus	ANCESTRAL SPECIES	16	ENSGT00940000164023.c.a	ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT01100000266942	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00390000012434	ENSGT00390000007212
Mus_A	ANCESTRAL SPECIES	10	ENSGT00960000186717.a.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT01100000266942	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00390000012434.k	ENSGT00390000007212
Mus_B	ANCESTRAL SPECIES	9	ENSGT00960000186717.a.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT01100000266942	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00390000012434.k	ENSGT00390000007212
Mus_C	ANCESTRAL SPECIES	9	ENSGT00960000186717.a.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT01100000266942	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00550000075134	ENSGT00950000182993.A.a	ENSGT00390000012434.k	ENSGT00390000007212
Steppe mouse	MODERN SPECIES	2657				Vav1 (ENSMSIG00000021244)	Trip10 (ENSMSIG00000021462)	Gpr108 (ENSMSIG00000021547)	C3 (ENSMSIG00000021615)	Tnfsf14 (ENSMSIG00000021706)	Cd70 (ENSMSIG00000021712)	Tnfsf9 (ENSMSIG00000021718)	Tubb4a (ENSMSIG00000021731)	Dennd1c (ENSMSIG00000021743)	Crb3 (ENSMSIG00000021794)	Slc25a23 (ENSMSIG00000021822)	Slc25a41 (ENSMSIG00000021849)	Khsrp (ENSMSIG00000021874) #22	Gm17949 (ENSMSIG00000021931)	Gtf2f1 (ENSMSIG00000021940)	Pspn (ENSMSIG00000021975)	Alkbh7 (ENSMSIG00000021986)	Clpp (ENSMSIG00000022008)	Acer1 (ENSMSIG00000022023)	Mllt1 (ENSMSIG00000022050)	Acsbg3 (ENSMSIG00000022123)	Acsbg2 (ENSMSIG00000022144)	Rfx2 (ENSMSIG00000022188)	Prr22 (ENSMSIG00000022272)	Dus3l (ENSMSIG00000022291)	Nrtn (ENSMSIG00000022315)	ENSMSIG00000022323	Vmac (ENSMSIG00000022334)
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0022726	Adgre1 (MGP_SPRETEiJ_G0022725)	Vav1 (MGP_SPRETEiJ_G0022724)	Trip10 (MGP_SPRETEiJ_G0022723)	Gpr108 (MGP_SPRETEiJ_G0022722)	C3 (MGP_SPRETEiJ_G0022721)	Tnfsf14 (MGP_SPRETEiJ_G0022720)	Cd70 (MGP_SPRETEiJ_G0022719)	Tnfsf9 (MGP_SPRETEiJ_G0022718)	MGP_SPRETEiJ_G0022717	Tubb4a (MGP_SPRETEiJ_G0022716)	MGP_SPRETEiJ_G0022715	Crb3 (MGP_SPRETEiJ_G0022714)	Slc25a23 (MGP_SPRETEiJ_G0022713)	Slc25a41 (MGP_SPRETEiJ_G0022712)	Khsrp (MGP_SPRETEiJ_G0022711) #22	Gtf2f1 (MGP_SPRETEiJ_G0022710)	Pspn (MGP_SPRETEiJ_G0022709)	Alkbh7 (MGP_SPRETEiJ_G0022708)	Clpp (MGP_SPRETEiJ_G0022707)	Acer1 (MGP_SPRETEiJ_G0022706)	Mllt1 (MGP_SPRETEiJ_G0022705)	Acsbg3 (MGP_SPRETEiJ_G0022704)	Acsbg2 (MGP_SPRETEiJ_G0022703)	Rfx2 (MGP_SPRETEiJ_G0022702)	Prr22 (MGP_SPRETEiJ_G0022701)	Dus3l (MGP_SPRETEiJ_G0022700)	Nrtn (MGP_SPRETEiJ_G0022699)	Ndufa11 (MGP_SPRETEiJ_G0022698)	Vmac (MGP_SPRETEiJ_G0022697)	Ranbp3 (MGP_SPRETEiJ_G0022696)
Mouse	MODERN SPECIES	8	Cntnap5c (ENSMUSG00000038048)	Vmn2r120 (ENSMUSG00000090655)	Adgre1 (ENSMUSG00000004730)	Vav1 (ENSMUSG00000034116)	Trip10 (ENSMUSG00000019487)	Gpr108 (ENSMUSG00000005823)	C3 (ENSMUSG00000024164)	Tnfsf14 (ENSMUSG00000005824)	Cd70 (ENSMUSG00000019489)	Tnfsf9 (ENSMUSG00000035678)	Tubb4a (ENSMUSG00000062591)	Dennd1c (ENSMUSG00000002668)	Crb3 (ENSMUSG00000044279)	Slc25a23 (ENSMUSG00000046329)	Slc25a41 (ENSMUSG00000011486)	Khsrp (ENSMUSG00000007670) #22	Gm17949 (ENSMUSG00000109739)	Gtf2f1 (ENSMUSG00000002658)	Pspn (ENSMUSG00000002664)	Alkbh7 (ENSMUSG00000002661)	Clpp (ENSMUSG00000002660)	Acer1 (ENSMUSG00000045019)	Mllt1 (ENSMUSG00000024212)	Acsbg3 (ENSMUSG00000024209)	Acsbg2 (ENSMUSG00000024207)	Rfx2 (ENSMUSG00000024206)	Prr22 (ENSMUSG00000090273)	Dus3l (ENSMUSG00000007603)	Nrtn (ENSMUSG00000039481)	Ndufa11 (ENSMUSG00000002379)	Vmac (ENSMUSG00000054723)
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021815	Adgre1 (MGP_CAROLIEiJ_G0021814)	Vav1 (MGP_CAROLIEiJ_G0021813)	Trip10 (MGP_CAROLIEiJ_G0021812)	Gpr108 (MGP_CAROLIEiJ_G0021811)	C3 (MGP_CAROLIEiJ_G0021810)	Tnfsf14 (MGP_CAROLIEiJ_G0021809)	Cd70 (MGP_CAROLIEiJ_G0021808)	Tnfsf9 (MGP_CAROLIEiJ_G0021807)	MGP_CAROLIEiJ_G0021806	Tubb4a (MGP_CAROLIEiJ_G0021805)	Dennd1c (MGP_CAROLIEiJ_G0021804)	Crb3 (MGP_CAROLIEiJ_G0021803)	Slc25a23 (MGP_CAROLIEiJ_G0021802)	Slc25a41 (MGP_CAROLIEiJ_G0021801)	Khsrp (MGP_CAROLIEiJ_G0021800) #22	Gtf2f1 (MGP_CAROLIEiJ_G0021799)	Pspn (MGP_CAROLIEiJ_G0021798)	Alkbh7 (MGP_CAROLIEiJ_G0021797)	Clpp (MGP_CAROLIEiJ_G0021796)	Acer1 (MGP_CAROLIEiJ_G0021795)	Mllt1 (MGP_CAROLIEiJ_G0021794)	Acsbg3 (MGP_CAROLIEiJ_G0021793)	Acsbg2 (MGP_CAROLIEiJ_G0021792)	Rfx2 (MGP_CAROLIEiJ_G0021791)	Prr22 (MGP_CAROLIEiJ_G0021790)	Dus3l (MGP_CAROLIEiJ_G0021789)	Nrtn (MGP_CAROLIEiJ_G0021788)	Ndufa11 (MGP_CAROLIEiJ_G0021787)	Vmac (MGP_CAROLIEiJ_G0021786)	Ranbp3 (MGP_CAROLIEiJ_G0021785)
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020804	Adgre1 (MGP_PahariEiJ_G0020803)	Vav1 (MGP_PahariEiJ_G0020802)	Trip10 (MGP_PahariEiJ_G0020801)	Gpr108 (MGP_PahariEiJ_G0020800)	C3 (MGP_PahariEiJ_G0020799)	Tnfsf14 (MGP_PahariEiJ_G0020798)	Cd70 (MGP_PahariEiJ_G0020797)	Tnfsf9 (MGP_PahariEiJ_G0020796)	MGP_PahariEiJ_G0020795	Tubb4a (MGP_PahariEiJ_G0020794)	Dennd1c (MGP_PahariEiJ_G0020793)	Crb3 (MGP_PahariEiJ_G0020792)	Slc25a23 (MGP_PahariEiJ_G0020791)	Slc25a41 (MGP_PahariEiJ_G0020790)	Khsrp (MGP_PahariEiJ_G0020789) #22	Gtf2f1 (MGP_PahariEiJ_G0020788)	Pspn (MGP_PahariEiJ_G0020787)	Alkbh7 (MGP_PahariEiJ_G0020786)	Clpp (MGP_PahariEiJ_G0020785)	Acer1 (MGP_PahariEiJ_G0020784)	Mllt1 (MGP_PahariEiJ_G0020783)	Acsbg3 (MGP_PahariEiJ_G0020782)	Acsbg2 (MGP_PahariEiJ_G0020781)	Rfx2 (MGP_PahariEiJ_G0020780)	Prr22 (MGP_PahariEiJ_G0020779)	Dus3l (MGP_PahariEiJ_G0020778)	Nrtn (MGP_PahariEiJ_G0020777)	Ndufa11 (MGP_PahariEiJ_G0020776)	Vmac (MGP_PahariEiJ_G0020775)	Ranbp3 (MGP_PahariEiJ_G0020774)
Rat	MODERN SPECIES	19	Vom2r79 (ENSRNOG00000047337)	Adgre1 (ENSRNOG00000046254)	Vav1 (ENSRNOG00000050430)	Trip10 (ENSRNOG00000055524)	Gpr108 (ENSRNOG00000046128)	C3 (ENSRNOG00000046834)	Tnfsf14 (ENSRNOG00000047730)	Cd70 (ENSRNOG00000051015)	Brcc3 (ENSRNOG00000048061)	Tnfsf9 (ENSRNOG00000045595)	Tubb4a (ENSRNOG00000047505)	Dennd1c (ENSRNOG00000046050)	Crb3 (ENSRNOG00000070099)	Slc25a23 (ENSRNOG00000047781)	Slc25a41 (ENSRNOG00000048853)	Khsrp (ENSRNOG00000047628) #22	Gm17949 (ENSRNOG00000064877)	Gtf2f1 (ENSRNOG00000047134)	Pspn (ENSRNOG00000071190)	Alkbh7 (ENSRNOG00000047089)	Clpp (ENSRNOG00000047052)	Acer1 (ENSRNOG00000047368)	Mllt1 (ENSRNOG00000048736)	Acsbg3 (ENSRNOG00000047549)	Acsbg2 (ENSRNOG00000045947)	Rfx2 (ENSRNOG00000045846)	Prr22 (ENSRNOG00000047295)	Dus3l (ENSRNOG00000050381)	Nrtn (ENSRNOG00000048651)	Ndufa11 (ENSRNOG00000048320)	Vmac (ENSRNOG00000065863)
Upper Galilee mountains blind mole rat	MODERN SPECIES	975		ENSNGAG00000013551	Adgre4 (ENSNGAG00000011964)	Adgre1 (ENSNGAG00000023217)	Vav1 (ENSNGAG00000018348)	Trip10 (ENSNGAG00000014674)	Gpr108 (ENSNGAG00000016378)	C3 (ENSNGAG00000022830)	Tnfsf14 (ENSNGAG00000023106)	Cd70 (ENSNGAG00000013982)	Tubb4a (ENSNGAG00000019498)	Dennd1c (ENSNGAG00000015322)	Crb3 (ENSNGAG00000023048)	Slc25a23 (ENSNGAG00000023065)	Slc25a41 (ENSNGAG00000019185)	Khsrp (ENSNGAG00000023093) #22	Gm17949 (ENSNGAG00000023078)	Gtf2f1 (ENSNGAG00000023277)	Pspn (ENSNGAG00000022337)	Alkbh7 (ENSNGAG00000018037)	Clpp (ENSNGAG00000020943)	Acer1 (ENSNGAG00000021750)	Mllt1 (ENSNGAG00000015361)	Rfx2 (ENSNGAG00000018829)	Prr22 (ENSNGAG00000023052)	Dus3l (ENSNGAG00000017157)	Nrtn (ENSNGAG00000021333)	Ndufa11 (ENSNGAG00000017779)	Vmac (ENSNGAG00000016642)	Ranbp3 (ENSNGAG00000015130)	Catsperd (ENSNGAG00000021716)
Lesser Egyptian jerboa	MODERN SPECIES	55					Vav1 (ENSJJAG00000023634)	Trip10 (ENSJJAG00000011683)	Gpr108 (ENSJJAG00000023696)	C3 (ENSJJAG00000024349)	Tnfsf14 (ENSJJAG00000004377)	Cd70 (ENSJJAG00000019950)	Tubb4a (ENSJJAG00000001103)	ENSJJAG00000023239	Crb3 (ENSJJAG00000017361)	Slc25a23 (ENSJJAG00000018390)	Slc25a41 (ENSJJAG00000009731)	Khsrp (ENSJJAG00000006370) #22	Gm17949 (ENSJJAG00000017204)	Gtf2f1 (ENSJJAG00000016614)	Pspn (ENSJJAG00000023140)	Alkbh7 (ENSJJAG00000023908)	ENSJJAG00000019233	Acer1 (ENSJJAG00000018285)	Mllt1 (ENSJJAG00000017227)	Acsbg3 (ENSJJAG00000021099)	Acsbg2 (ENSJJAG00000022623)	Rfx2 (ENSJJAG00000009362)	Prr22 (ENSJJAG00000020858)	Dus3l (ENSJJAG00000023742)	Nrtn (ENSJJAG00000016578)	Ndufa11 (ENSJJAG00000023264)	Vmac (ENSJJAG00000021312)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00390000016735	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00940000162163	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800.b	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Naked mole-rat female	MODERN SPECIES	21	SH2D3A (ENSHGLG00000030969)	TRIP10 (ENSHGLG00000006018)	GPR108 (ENSHGLG00000010354)	TNFSF14 (ENSHGLG00000041682)	ENSHGLG00000021141	CD70 (ENSHGLG00000013155)	ENSHGLG00000041462	ENSHGLG00000008762	ENSHGLG00000036699	ENSHGLG00000017930	ENSHGLG00000039660	TUBB4A (ENSHGLG00000038896)	DENND1C (ENSHGLG00000038310)	ENSHGLG00000048231	SLC25A23 (ENSHGLG00000007588)	KHSRP (ENSHGLG00000013239) #22	PSPN (ENSHGLG00000018421)	ALKBH7 (ENSHGLG00000018436)	ENSHGLG00000010702	ENSHGLG00000048812	ENSHGLG00000007120	ENSHGLG00000005716	ENSHGLG00000045280	ENSHGLG00000045808	ENSHGLG00000041157	ENSHGLG00000049858	ENSHGLG00000033621	ENSHGLG00000016971	ENSHGLG00000015081	CNN1 (ENSHGLG00000015039)	ECSIT (ENSHGLG00000015014)
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00390000016735	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00940000162163	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800.b	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Guinea pig	MODERN SPECIES	229										ENSCPOG00000022803	TUBB4A (ENSCPOG00000003237)	DENND1C (ENSCPOG00000003232)	CRB3 (ENSCPOG00000024888)	SLC25A23 (ENSCPOG00000011096)	SLC25A41 (ENSCPOG00000029988)	KHSRP (ENSCPOG00000005140) #22	GTF2F1 (ENSCPOG00000012632)	PSPN (ENSCPOG00000038963)	ALKBH7 (ENSCPOG00000013958)	CLPP (ENSCPOG00000013954)	ACER1 (ENSCPOG00000021961)	MLLT1 (ENSCPOG00000001260)	ENSCPOG00000025754	ENSCPOG00000014317	RFX2 (ENSCPOG00000024260)	RANBP3 (ENSCPOG00000021646)	CAPS (ENSCPOG00000026058)	VMAC (ENSCPOG00000014675)	NDUFA11 (ENSCPOG00000019390)	ENSCPOG00000037079	ENSCPOG00000037083
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00390000016735	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00940000162163	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800.b	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00950000182993.A.a
Long-tailed chinchilla	MODERN SPECIES	202	ZNF709 (ENSCLAG00000014910)	ENSCLAG00000011723	VAV1 (ENSCLAG00000008423)	SH2D3A (ENSCLAG00000009886)	TRIP10 (ENSCLAG00000009696)	GPR108 (ENSCLAG00000012060)	C3 (ENSCLAG00000008464)	TNFSF14 (ENSCLAG00000008813)	ENSCLAG00000009197	ENSCLAG00000009403	TUBB4A (ENSCLAG00000008831)	DENND1C (ENSCLAG00000012303)	ENSCLAG00000014016	SLC25A23 (ENSCLAG00000015826)	SLC25A41 (ENSCLAG00000006414)	KHSRP (ENSCLAG00000007309) #22	ENSCLAG00000007910	GTF2F1 (ENSCLAG00000008779)	PSPN (ENSCLAG00000016653)	ALKBH7 (ENSCLAG00000017244)	CLPP (ENSCLAG00000009974)	ACER1 (ENSCLAG00000011663)	MLLT1 (ENSCLAG00000011833)	ENSCLAG00000006362	ACSBG2 (ENSCLAG00000007301)	RFX2 (ENSCLAG00000008242)	RANBP3 (ENSCLAG00000011775)	CAPS (ENSCLAG00000013758)	VMAC (ENSCLAG00000012168)	NDUFA11 (ENSCLAG00000008043)	DUS3L (ENSCLAG00000008470)
Degu	MODERN SPECIES	91	ENSODEG00000020329	ENSODEG00000015977	ENSODEG00000020296	VAV1 (ENSODEG00000015478)	TRIP10 (ENSODEG00000015929)	GPR108 (ENSODEG00000016288)	C3 (ENSODEG00000015506)	TNFSF14 (ENSODEG00000015436)	ENSODEG00000020289	ENSODEG00000015175	TUBB4A (ENSODEG00000015772)	ENSODEG00000015746	CRB3 (ENSODEG00000015295)	SLC25A23 (ENSODEG00000014916)	SLC25A41 (ENSODEG00000015990)	KHSRP (ENSODEG00000015021) #22	ENSODEG00000015969	GTF2F1 (ENSODEG00000014900)	PSPN (ENSODEG00000014761)	ALKBH7 (ENSODEG00000015141)	CLPP (ENSODEG00000015485)	ACER1 (ENSODEG00000015726)	MLLT1 (ENSODEG00000014883)	ENSODEG00000015920	ENSODEG00000015714	RFX2 (ENSODEG00000015368)	RANBP3 (ENSODEG00000015257)	CAPS (ENSODEG00000016529)	VMAC (ENSODEG00000014819)	NDUFA11 (ENSODEG00000015123)	NRTN (ENSODEG00000014997)
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Marmotini	ANCESTRAL SPECIES	24	ENSGT00950000183069.b.b.a.a.b	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a.e	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000014595.b.d	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a.e	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Arctic ground squirrel	MODERN SPECIES	301							TNFSF14 (ENSUPAG00010023671)	ENSUPAG00010023669	CD70 (ENSUPAG00010023668)	ENSUPAG00010023667	TUBB4A (ENSUPAG00010023665)	DENND1C (ENSUPAG00010023662)	ENSUPAG00010023661	SLC25A23 (ENSUPAG00010023660)	SLC25A41 (ENSUPAG00010023658)	KHSRP (ENSUPAG00010023657) #22	ENSUPAG00010023656	GTF2F1 (ENSUPAG00010023655)	PSPN (ENSUPAG00010023654)	ALKBH7 (ENSUPAG00010023653)	CLPP (ENSUPAG00010023652)	ACER1 (ENSUPAG00010023651)	MLLT1 (ENSUPAG00010023650)	ENSUPAG00010023649	ACSBG2 (ENSUPAG00010023648)	RFX2 (ENSUPAG00010023647)	RANBP3 (ENSUPAG00010023645)	CAPS (ENSUPAG00010023646)	VMAC (ENSUPAG00010023644)	ENSUPAG00010023643	ENSUPAG00010023642
Squirrel	MODERN SPECIES	188	ENSSTOG00000028099	ADGRE1 (ENSSTOG00000014756)	VAV1 (ENSSTOG00000010806)	TRIP10 (ENSSTOG00000004959)	GPR108 (ENSSTOG00000028930)	ENSSTOG00000032813	TNFSF14 (ENSSTOG00000021016)	ENSSTOG00000029829	CD70 (ENSSTOG00000027620)	TUBB4A (ENSSTOG00000020465)	ENSSTOG00000032756	ENSSTOG00000002404	CRB3 (ENSSTOG00000029565)	SLC25A23 (ENSSTOG00000002387)	SLC25A41 (ENSSTOG00000023022)	KHSRP (ENSSTOG00000002371) #22	ENSSTOG00000032166	GTF2F1 (ENSSTOG00000025689)	PSPN (ENSSTOG00000023397)	ALKBH7 (ENSSTOG00000002368)	CLPP (ENSSTOG00000028013)	ACER1 (ENSSTOG00000002348)	ENSSTOG00000022476	MLLT1 (ENSSTOG00000002340)	ENSSTOG00000019704	ENSSTOG00000007511	RFX2 (ENSSTOG00000027723)	ENSSTOG00000034262	RANBP3 (ENSSTOG00000006462)	CAPS (ENSSTOG00000006493)	VMAC (ENSSTOG00000012822)
Alpin marmot	MODERN SPECIES	88	ENSMMMG00000020108	ENSMMMG00000020088	ADGRE1 (ENSMMMG00000019994)	VAV1 (ENSMMMG00000019856)	SH2D3A (ENSMMMG00000019845)	TRIP10 (ENSMMMG00000019830)	GPR108 (ENSMMMG00000019821)	TNFSF14 (ENSMMMG00000019585)	CD70 (ENSMMMG00000019578)	TNFSF9 (ENSMMMG00000019570)	TUBB4A (ENSMMMG00000019550)	DENND1C (ENSMMMG00000019533)	ENSMMMG00000019517	SLC25A23 (ENSMMMG00000019504)	SLC25A41 (ENSMMMG00000019493)	KHSRP (ENSMMMG00000019257) #22	ENSMMMG00000019249	PSPN (ENSMMMG00000019228)	ALKBH7 (ENSMMMG00000019225)	CLPP (ENSMMMG00000019216)	ACER1 (ENSMMMG00000019214)	MLLT1 (ENSMMMG00000019206)	ENSMMMG00000019196	ACSBG2 (ENSMMMG00000019139)	RFX2 (ENSMMMG00000019107)	ENSMMMG00000019101	RANBP3 (ENSMMMG00000019085)	CAPS (ENSMMMG00000019062)	VMAC (ENSMMMG00000019061)	NDUFA11 (ENSMMMG00000019059)	NRTN (ENSMMMG00000019052)
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005025028	ADGRE1 (ENSSVLG00005024961)	VAV1 (ENSSVLG00005024496)	SH2D3A (ENSSVLG00005024392)	TRIP10 (ENSSVLG00005024340)	GPR108 (ENSSVLG00005024305)	C3 (ENSSVLG00005023985)	TNFSF14 (ENSSVLG00005023899)	CD70 (ENSSVLG00005023872)	TNFSF9 (ENSSVLG00005023843)	TUBB4A (ENSSVLG00005023819)	DENND1C (ENSSVLG00005023643)	CRB3 (ENSSVLG00005023581)	SLC25A23 (ENSSVLG00005023541)	SLC25A41 (ENSSVLG00005023479)	KHSRP (ENSSVLG00005023444) #22	ENSSVLG00005023383	GTF2F1 (ENSSVLG00005023301)	PSPN (ENSSVLG00005023279)	ALKBH7 (ENSSVLG00005023240)	CLPP (ENSSVLG00005023216)	ACER1 (ENSSVLG00005023163)	MLLT1 (ENSSVLG00005023111)	ENSSVLG00005022830	ACSBG2 (ENSSVLG00005022613)	RFX2 (ENSSVLG00005022368)	RANBP3 (ENSSVLG00005022208)	CAPS (ENSSVLG00005022099)	VMAC (ENSSVLG00005022064)	NDUFA11 (ENSSVLG00005022032)	ENSSVLG00005021990
Lagomorpha	ANCESTRAL SPECIES	283																ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800
Pika	MODERN SPECIES	4717																ENSOPRG00000010594 #22	ENSOPRG00000018386
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	4	ENSOCUG00000023908	PRKACB (ENSOCUG00000012937) #11	ENSOCUG00000039315	ENSOCUG00000036667	TTLL7 (ENSOCUG00000008140) #12	ENSOCUG00000036970	ADGRL2 (ENSOCUG00000013639) #14	ENSOCUG00000037295	ENSOCUG00000027270	ADGRL4 (ENSOCUG00000011390) #15	IFI44 (ENSOCUG00000006482) #16	IFI44L (ENSOCUG00000024378)	PTGFR (ENSOCUG00000002522) #18	GIPC2 (ENSOCUG00000016760) #19	DNAJB4 (ENSOCUG00000012679) #21	ENSOCUG00000002225 #22	NEXN (ENSOCUG00000024272) #23	MIGA1 (ENSOCUG00000017383) #24	USP33 (ENSOCUG00000006721) #25	ZZZ3 (ENSOCUG00000002167) #26	AK5 (ENSOCUG00000022596) #27	ENSOCUG00000015239	ENSOCUG00000005695 #28	ST6GALNAC5 (ENSOCUG00000005692) #29	FRMPD4 (ENSOCUG00000027222)	ENSOCUG00000031702 #30	ENSOCUG00000035287	ENSOCUG00000004372	ENSOCUG00000004368	ENSOCUG00000037410	ASB17 (ENSOCUG00000002104)
Rabbit	MODERN SPECIES	903																ENSOCUG00000026747 #22	ALKBH7 (ENSOCUG00000006905)	ENSOCUG00000023195	ENSOCUG00000027799	PSPN (ENSOCUG00000006908)	CLPP (ENSOCUG00000026119)	ACER1 (ENSOCUG00000021869)	ENSOCUG00000032056
Primates	ANCESTRAL SPECIES	18	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389
Strepsirrhini	ANCESTRAL SPECIES	26	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389
Bushbaby	MODERN SPECIES	242	ENSOGAG00000009354	ADGRE1 (ENSOGAG00000028445)	VAV1 (ENSOGAG00000002034)	ENSOGAG00000034187	TRIP10 (ENSOGAG00000026236)	GPR108 (ENSOGAG00000026135)	C3 (ENSOGAG00000002028)	TNFSF14 (ENSOGAG00000000974)	CD70 (ENSOGAG00000001157)	TNFSF9 (ENSOGAG00000015299)	TUBB4A (ENSOGAG00000027332)	DENND1C (ENSOGAG00000034782)	CRB3 (ENSOGAG00000008078)	SLC25A23 (ENSOGAG00000008076)	SLC25A41 (ENSOGAG00000034049)	KHSRP (ENSOGAG00000008073) #22	ENSOGAG00000030767	ENSOGAG00000008070	PSPN (ENSOGAG00000033652)	ALKBH7 (ENSOGAG00000030625)	CLPP (ENSOGAG00000028227)	ACER1 (ENSOGAG00000001804)	MLLT1 (ENSOGAG00000008063)	ENSOGAG00000028426	RFX2 (ENSOGAG00000004261)	RANBP3 (ENSOGAG00000004258)	CAPS (ENSOGAG00000004255)	NDUFA11 (ENSOGAG00000028410)	ENSOGAG00000016559	NRTN (ENSOGAG00000016554)	DUS3L (ENSOGAG00000016549)
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Lemuriformes_a	ANCESTRAL SPECIES	17	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a.i	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a
Coquerels sifaka	MODERN SPECIES	348	INSR (ENSPCOG00000025098)	ADGRE1 (ENSPCOG00000005255)	VAV1 (ENSPCOG00000019002)	SH2D3A (ENSPCOG00000018681)	TRIP10 (ENSPCOG00000013866)	GPR108 (ENSPCOG00000007215)	C3 (ENSPCOG00000018007)	TNFSF14 (ENSPCOG00000018066)	CD70 (ENSPCOG00000015987)	TNFSF9 (ENSPCOG00000014608)	TUBB4A (ENSPCOG00000015978)	DENND1C (ENSPCOG00000004246)	CRB3 (ENSPCOG00000028855)	SLC25A23 (ENSPCOG00000001217)	SLC25A41 (ENSPCOG00000003363)	KHSRP (ENSPCOG00000027506) #22	GTF2F1 (ENSPCOG00000013474)	PSPN (ENSPCOG00000025496)	ALKBH7 (ENSPCOG00000028026)	CLPP (ENSPCOG00000027215)	ACER1 (ENSPCOG00000016715)	MLLT1 (ENSPCOG00000014345)	ACSBG2 (ENSPCOG00000027134)	RFX2 (ENSPCOG00000027982)	RANBP3 (ENSPCOG00000021692)	CAPS (ENSPCOG00000026358)	VMAC (ENSPCOG00000019572)	NDUFA11 (ENSPCOG00000020260)	ENSPCOG00000022083	NRTN (ENSPCOG00000017407)	DUS3L (ENSPCOG00000026203)
Greater bamboo lemur	MODERN SPECIES	158		ADGRE1 (ENSPSMG00000009291)	VAV1 (ENSPSMG00000009646)	SH2D3A (ENSPSMG00000009873)	TRIP10 (ENSPSMG00000009927)	GPR108 (ENSPSMG00000009999)	C3 (ENSPSMG00000010055)	TNFSF14 (ENSPSMG00000010082)	CD70 (ENSPSMG00000010087)	TNFSF9 (ENSPSMG00000010091)	TUBB4A (ENSPSMG00000010210)	DENND1C (ENSPSMG00000010519)	ENSPSMG00000010533	SLC25A23 (ENSPSMG00000010559)	SLC25A41 (ENSPSMG00000010572)	KHSRP (ENSPSMG00000010582) #22
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	11	ENSMICG00000003093 #7	DNASE2B (ENSMICG00000037013) #8	ENSMICG00000037252 #9	ENSMICG00000042739	SAMD13 (ENSMICG00000036198) #10	ENSMICG00000047801	PRKACB (ENSMICG00000003079) #11	TTLL7 (ENSMICG00000016281) #12	ADGRL2 (ENSMICG00000009066) #14	ADGRL4 (ENSMICG00000014527) #15	IFI44 (ENSMICG00000001235) #16	IFI44L (ENSMICG00000031708)	PTGFR (ENSMICG00000035932) #18	GIPC2 (ENSMICG00000014492) #19	DNAJB4 (ENSMICG00000014487) #21	ENSMICG00000014463 #22	NEXN (ENSMICG00000014456) #23	MIGA1 (ENSMICG00000030633) #24	USP33 (ENSMICG00000010681) #25	ZZZ3 (ENSMICG00000004495) #26	AK5 (ENSMICG00000004487) #27	ENSMICG00000005599	ENSMICG00000004478 #28	ST6GALNAC5 (ENSMICG00000045831) #29	ST6GALNAC3 (ENSMICG00000027487) #30	ENSMICG00000042274	ENSMICG00000026387	ASB17 (ENSMICG00000042539)	MSH4 (ENSMICG00000017811) #33	ENSMICG00000017810 #34	ACADM (ENSMICG00000017809) #35
Mouse lemur	MODERN SPECIES	16	INSR (ENSMICG00000011978)	ENSMICG00000042948	ADGRE1 (ENSMICG00000034364)	VAV1 (ENSMICG00000014001)	SH2D3A (ENSMICG00000000937)	TRIP10 (ENSMICG00000000935)	GPR108 (ENSMICG00000042263)	C3 (ENSMICG00000000921)	TNFSF14 (ENSMICG00000033223)	CD70 (ENSMICG00000042047)	TNFSF9 (ENSMICG00000046337)	TUBB4A (ENSMICG00000014890)	DENND1C (ENSMICG00000004586)	CRB3 (ENSMICG00000034140)	SLC25A23 (ENSMICG00000034151)	KHSRP (ENSMICG00000007863) #22	GTF2F1 (ENSMICG00000006292)	PSPN (ENSMICG00000044211)	ALKBH7 (ENSMICG00000006288)	ENSMICG00000006284	ACER1 (ENSMICG00000006279)	MLLT1 (ENSMICG00000006273)	ACSBG2 (ENSMICG00000014476)	RFX2 (ENSMICG00000004022)	RANBP3 (ENSMICG00000004018)	CAPS (ENSMICG00000004017)	VMAC (ENSMICG00000046967)	NDUFA11 (ENSMICG00000033137)	NRTN (ENSMICG00000044302)	DUS3L (ENSMICG00000007097)	PRR22 (ENSMICG00000026944)
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a	ENSGT00550000075134
Tarsier	MODERN SPECIES	2544												DENND1C (ENSTSYG00000031145)	CRB3 (ENSTSYG00000004610)	SLC25A23 (ENSTSYG00000031974)	SLC25A41 (ENSTSYG00000034857)	KHSRP (ENSTSYG00000011552) #22	ENSTSYG00000036614	GTF2F1 (ENSTSYG00000011531)	ENSTSYG00000031904	ALKBH7 (ENSTSYG00000026277)	CLPP (ENSTSYG00000002878)	ACER1 (ENSTSYG00000032476)	MLLT1 (ENSTSYG00000031730)
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a	ENSGT00550000075134
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032.s	ENSGT00950000182993.B.b	ENSGT00390000014585.k	ENSGT00390000005830.v	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442.a	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a	ENSGT00550000075134
Cebidae	ANCESTRAL SPECIES	20	ENSGT00950000183005.b.c.b.n	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032.s	ENSGT00950000182993.B.b	ENSGT00390000014585.k	ENSGT00390000005830.v	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442.a	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a	ENSGT00550000075134
Marmoset	MODERN SPECIES	14	ENSCJAG00000016144	ENSCJAG00000038679	ADGRE1 (ENSCJAG00000016187)	VAV1 (ENSCJAG00000016236)	SH2D3A (ENSCJAG00000036290)	TRIP10 (ENSCJAG00000016334)	GPR108 (ENSCJAG00000016419)	C3 (ENSCJAG00000016466)	TNFSF14 (ENSCJAG00000085938)	CD70 (ENSCJAG00000081455)	TNFSF9 (ENSCJAG00000016530)	TUBB4A (ENSCJAG00000016534)	DENND1C (ENSCJAG00000016543)	CRB3 (ENSCJAG00000044939)	SLC25A23 (ENSCJAG00000016577)	KHSRP (ENSCJAG00000016627) #22	GTF2F1 (ENSCJAG00000016669)	PSPN (ENSCJAG00000016688)	ALKBH7 (ENSCJAG00000016691)	CLPP (ENSCJAG00000046904)	ACER1 (ENSCJAG00000016705)	MLLT1 (ENSCJAG00000044059)	ACSBG2 (ENSCJAG00000016734)	RFX2 (ENSCJAG00000016750)	RANBP3 (ENSCJAG00000016791)	VMAC (ENSCJAG00000072555)	NDUFA11 (ENSCJAG00000016923)	NRTN (ENSCJAG00000016988)	DUS3L (ENSCJAG00000016997)	PRR22 (ENSCJAG00000017034)	CATSPERD (ENSCJAG00000016893)
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00950000183005.b.c.b.m	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032.s	ENSGT00950000182993.B.b	ENSGT00390000014585.k	ENSGT00390000005830.v	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442.a	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389	ENSGT00950000182993.A.a	ENSGT00550000075134
Bolivian squirrel monkey	MODERN SPECIES	150	ADGRE1 (ENSSBOG00000035948)	ENSSBOG00000032976	VAV1 (ENSSBOG00000034405)	SH2D3A (ENSSBOG00000017503)	TRIP10 (ENSSBOG00000007356)	GPR108 (ENSSBOG00000034952)	C3 (ENSSBOG00000024226)	TNFSF14 (ENSSBOG00000023172)	CD70 (ENSSBOG00000032929)	TNFSF9 (ENSSBOG00000036008)	TUBB4A (ENSSBOG00000019437)	DENND1C (ENSSBOG00000030628)	CRB3 (ENSSBOG00000030526)	SLC25A23 (ENSSBOG00000033178)	SLC25A41 (ENSSBOG00000020009)	KHSRP (ENSSBOG00000034871) #22	GTF2F1 (ENSSBOG00000033946)	PSPN (ENSSBOG00000031809)	ALKBH7 (ENSSBOG00000024563)	CLPP (ENSSBOG00000036193)	ACER1 (ENSSBOG00000028157)	MLLT1 (ENSSBOG00000025950)	ACSBG2 (ENSSBOG00000030379)	RFX2 (ENSSBOG00000017266)	RANBP3 (ENSSBOG00000029392)	CAPS (ENSSBOG00000034784)	VMAC (ENSSBOG00000032055)	NDUFA11 (ENSSBOG00000032051)	ENSSBOG00000026247	NRTN (ENSSBOG00000034565)	DUS3L (ENSSBOG00000020402)
Capuchin	MODERN SPECIES	53	ENSCCAG00000026975	ADGRE1 (ENSCCAG00000035307)	VAV1 (ENSCCAG00000033162)	SH2D3A (ENSCCAG00000024880)	TRIP10 (ENSCCAG00000026415)	GPR108 (ENSCCAG00000030348)	C3 (ENSCCAG00000029672)	TNFSF14 (ENSCCAG00000028792)	CD70 (ENSCCAG00000029093)	TNFSF9 (ENSCCAG00000029091)	TUBB4A (ENSCCAG00000013999)	DENND1C (ENSCCAG00000034905)	CRB3 (ENSCCAG00000023680)	SLC25A23 (ENSCCAG00000022370)	SLC25A41 (ENSCCAG00000026520)	KHSRP (ENSCCAG00000025297) #22	ENSCCAG00000037309	PSPN (ENSCCAG00000025813)	ALKBH7 (ENSCCAG00000025999)	CLPP (ENSCCAG00000037133)	ENSCCAG00000030606	ACER1 (ENSCCAG00000030282)	MLLT1 (ENSCCAG00000026378)	ACSBG2 (ENSCCAG00000028068)	RFX2 (ENSCCAG00000028516)	RANBP3 (ENSCCAG00000033247)	CAPS (ENSCCAG00000021578)	VMAC (ENSCCAG00000029347)	ENSCCAG00000033610	ENSCCAG00000031284	NRTN (ENSCCAG00000024847)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1222	PRKACB (ENSANAG00000024480) #11	TTLL7 (ENSANAG00000024884) #12	ADGRL2 (ENSANAG00000036995) #14	ENSANAG00000026509	ENSANAG00000032415	ENSANAG00000014411	ENSANAG00000026461	ADGRL4 (ENSANAG00000033541) #15	IFI44 (ENSANAG00000037840) #16	IFI44L (ENSANAG00000025193)	PTGFR (ENSANAG00000032906) #18	GIPC2 (ENSANAG00000002242) #19	DNAJB4 (ENSANAG00000038333) #21	ENSANAG00000036937	ENSANAG00000037601	ENSANAG00000004931 #22	NEXN (ENSANAG00000037207) #23	ENSANAG00000032240	MIGA1 (ENSANAG00000033584) #24	USP33 (ENSANAG00000024189) #25	ZZZ3 (ENSANAG00000029618) #26	ENSANAG00000028230	AK5 (ENSANAG00000038516) #27	PIGK (ENSANAG00000037622) #28	ST6GALNAC5 (ENSANAG00000033049) #29	ST6GALNAC3 (ENSANAG00000023719) #30	ENSANAG00000036637	ASB17 (ENSANAG00000021345)	MSH4 (ENSANAG00000038529) #33	RABGGTB (ENSANAG00000025027) #34	ACADM (ENSANAG00000035420) #35
Mas night monkey	MODERN SPECIES	937	ENSANAG00000027989	ENSANAG00000028071	ADGRE1 (ENSANAG00000034495)	VAV1 (ENSANAG00000020752)	SH2D3A (ENSANAG00000023272)	TRIP10 (ENSANAG00000025154)	GPR108 (ENSANAG00000028875)	C3 (ENSANAG00000029174)	TNFSF14 (ENSANAG00000020878)	CD70 (ENSANAG00000037767)	TNFSF9 (ENSANAG00000028047)	TUBB4A (ENSANAG00000035357)	DENND1C (ENSANAG00000026774)	SLC25A23 (ENSANAG00000037773)	SLC25A41 (ENSANAG00000021884)	KHSRP (ENSANAG00000027617) #22	ENSANAG00000035546	PSPN (ENSANAG00000027968)	ALKBH7 (ENSANAG00000035316)	CLPP (ENSANAG00000025005)	ACER1 (ENSANAG00000037792)	MLLT1 (ENSANAG00000034543)	ACSBG2 (ENSANAG00000021889)	RFX2 (ENSANAG00000023324)	RANBP3 (ENSANAG00000028437)	CAPS (ENSANAG00000028375)	ENSANAG00000034701	VMAC (ENSANAG00000037811)	NDUFA11 (ENSANAG00000034722)	ENSANAG00000005729	NRTN (ENSANAG00000038023)
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b
Gibbon	MODERN SPECIES		ENSNLEG00000028702	INSR (ENSNLEG00000000403)	ENSNLEG00000000394	ADGRE1 (ENSNLEG00000000380)	ENSNLEG00000032882	SH2D3A (ENSNLEG00000000371)	TRIP10 (ENSNLEG00000000351)	ENSNLEG00000000344	C3 (ENSNLEG00000016006)	TNFSF14 (ENSNLEG00000016000)	CD70 (ENSNLEG00000015993)	TUBB4A (ENSNLEG00000032392)	DENND1C (ENSNLEG00000015941)	CRB3 (ENSNLEG00000030283)	ENSNLEG00000015935	KHSRP (ENSNLEG00000015923) #22	GTF2F1 (ENSNLEG00000015909)	ENSNLEG00000029103	ACER1 (ENSNLEG00000015897)	ENSNLEG00000015892	ACSBG2 (ENSNLEG00000015883)	RFX2 (ENSNLEG00000015842)	RANBP3 (ENSNLEG00000015710)	CAPS (ENSNLEG00000015702)	TPRX2 (ENSNLEG00000000972)	ENSNLEG00000000975	ENSNLEG00000001326	ENSNLEG00000001333	CABP5 (ENSNLEG00000032429)	PLA2G4C (ENSNLEG00000004261)	ENSNLEG00000004264
Hominidae	ANCESTRAL SPECIES		ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b
Orangutan	MODERN SPECIES	10	ENSPPYG00000009467	ADGRE1 (ENSPPYG00000009466)	VAV1 (ENSPPYG00000009465)	SH2D3A (ENSPPYG00000009464)	TRIP10 (ENSPPYG00000009463)	GPR108 (ENSPPYG00000009462)	C3 (ENSPPYG00000009461)	TNFSF14 (ENSPPYG00000031179)	ENSPPYG00000009460	TNFSF9 (ENSPPYG00000009459)	TUBB4A (ENSPPYG00000041695)	DENND1C (ENSPPYG00000009458)	ENSPPYG00000009457	SLC25A23 (ENSPPYG00000009456)	SLC25A41 (ENSPPYG00000009455)	KHSRP (ENSPPYG00000009454) #22	PSPN (ENSPPYG00000009451)	ALKBH7 (ENSPPYG00000033281)	CLPP (ENSPPYG00000009449)	ACER1 (ENSPPYG00000009448)	MLLT1 (ENSPPYG00000009447)	ACSBG2 (ENSPPYG00000009446)	RFX2 (ENSPPYG00000009445)	RANBP3 (ENSPPYG00000009444)	ENSPPYG00000036062	ENSPPYG00000030201	FUT5 (ENSPPYG00000009438)	FUT6 (ENSPPYG00000009437)	NRTN (ENSPPYG00000009436)	DUS3L (ENSPPYG00000009435)	PRR22 (ENSPPYG00000009434)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00910000148057	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00950000183005.b.c.b.a	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00910000148057	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b
Human	MODERN SPECIES	10	MBD3L2B (ENSG00000196589)	ADGRE1 (ENSG00000174837)	VAV1 (ENSG00000141968)	SH2D3A (ENSG00000125731)	TRIP10 (ENSG00000125733)	GPR108 (ENSG00000125734)	C3 (ENSG00000125730)	TNFSF14 (ENSG00000125735)	CD70 (ENSG00000125726)	TNFSF9 (ENSG00000125657)	TUBB4A (ENSG00000104833)	DENND1C (ENSG00000205744)	CRB3 (ENSG00000130545)	SLC25A23 (ENSG00000125648)	SLC25A41 (ENSG00000181240)	KHSRP (ENSG00000088247) #22	GTF2F1 (ENSG00000125651)	PSPN (ENSG00000125650)	ALKBH7 (ENSG00000125652)	CLPP (ENSG00000125656)	ACER1 (ENSG00000167769)	MLLT1 (ENSG00000130382)	ACSBG2 (ENSG00000130377)	RFX2 (ENSG00000087903)	RANBP3 (ENSG00000031823)	CAPS (ENSG00000105519)	VMAC (ENSG00000187650)	NDUFA11 (ENSG00000174886)	ENSG00000267740	FUT5 (ENSG00000130383)	FUT3 (ENSG00000171124)
Pan	ANCESTRAL SPECIES	14	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00910000148057	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES		ENSPPAG00000042063 #9	SAMD13 (ENSPPAG00000028733) #10	ENSPPAG00000028069	PRKACB (ENSPPAG00000031832) #11	TTLL7 (ENSPPAG00000010019) #12	ADGRL2 (ENSPPAG00000027604) #14	ENSPPAG00000036091	ADGRL4 (ENSPPAG00000044128) #15	ENSPPAG00000043937	IFI44 (ENSPPAG00000043212) #16	ENSPPAG00000008179	IFI44L (ENSPPAG00000032207)	PTGFR (ENSPPAG00000034207) #18	GIPC2 (ENSPPAG00000038573) #19	DNAJB4 (ENSPPAG00000035241) #21	ENSPPAG00000038243 #22	NEXN (ENSPPAG00000031451) #23	MIGA1 (ENSPPAG00000034093) #24	USP33 (ENSPPAG00000043017) #25	ZZZ3 (ENSPPAG00000039210) #26	AK5 (ENSPPAG00000033952) #27	ENSPPAG00000038452	PIGK (ENSPPAG00000039870) #28	ST6GALNAC5 (ENSPPAG00000025247) #29	ENSPPAG00000033182	ST6GALNAC3 (ENSPPAG00000029808) #30	ASB17 (ENSPPAG00000039777)	MSH4 (ENSPPAG00000036948) #33	RABGGTB (ENSPPAG00000033708) #34	ENSPPAG00000002504	ACADM (ENSPPAG00000036005) #35
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	19	DDR1 (ENSPPAG00000026163)	GTF2H4 (ENSPPAG00000039926)	VARS2 (ENSPPAG00000041141)	SFTA2 (ENSPPAG00000032516)	ENSPPAG00000039149	ENSPPAG00000033294	ENSPPAG00000034516	ENSPPAG00000030679	C6orf15 (ENSPPAG00000034584)	PSORS1C1 (ENSPPAG00000043353)	CDSN (ENSPPAG00000026997)	PSORS1C2 (ENSPPAG00000035173)	CCHCR1 (ENSPPAG00000028102)	TCF19 (ENSPPAG00000029863)	POU5F1 (ENSPPAG00000038400)	ENSPPAG00000036395 #22	HLA-C (ENSPPAG00000006130)	ENSPPAG00000040874	ENSPPAG00000029716	ENSPPAG00000028234	MCCD1 (ENSPPAG00000030583)	DDX39B (ENSPPAG00000043072)	ATP6V1G2 (ENSPPAG00000032852)	NFKBIL1 (ENSPPAG00000039169)	LTA (ENSPPAG00000039140)	TNF (ENSPPAG00000017754)	LTB (ENSPPAG00000039591)	LST1 (ENSPPAG00000027803)	NCR3 (ENSPPAG00000038333)	AIF1 (ENSPPAG00000039190)	PRRC2A (ENSPPAG00000032344)
Bonobo	MODERN SPECIES	10	ENSPPAG00000031773	ADGRE1 (ENSPPAG00000033638)	VAV1 (ENSPPAG00000036601)	SH2D3A (ENSPPAG00000037810)	TRIP10 (ENSPPAG00000034017)	GPR108 (ENSPPAG00000029432)	C3 (ENSPPAG00000035996)	TNFSF14 (ENSPPAG00000037246)	CD70 (ENSPPAG00000029346)	TNFSF9 (ENSPPAG00000043434)	TUBB4A (ENSPPAG00000021486)	DENND1C (ENSPPAG00000037306)	CRB3 (ENSPPAG00000028757)	SLC25A23 (ENSPPAG00000040203)	SLC25A41 (ENSPPAG00000037155)	ENSPPAG00000036398 #22	GTF2F1 (ENSPPAG00000006377)	PSPN (ENSPPAG00000038423)	ALKBH7 (ENSPPAG00000028564)	CLPP (ENSPPAG00000041016)	ACER1 (ENSPPAG00000041682)	MLLT1 (ENSPPAG00000042286)	ACSBG2 (ENSPPAG00000031354)	RFX2 (ENSPPAG00000041867)	RANBP3 (ENSPPAG00000040739)	ENSPPAG00000022696	VMAC (ENSPPAG00000031186)	ENSPPAG00000024786	FUT3 (ENSPPAG00000035068)	FUT6 (ENSPPAG00000030226)	DUS3L (ENSPPAG00000038054)
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES		ENSPTRG00000041946	ENSPTRG00000051420	PRKACB (ENSPTRG00000000899) #11	TTLL7 (ENSPTRG00000000898) #12	ENSPTRG00000028441	ENSPTRG00000048586	ADGRL2 (ENSPTRG00000000896) #14	ENSPTRG00000039978	ADGRL4 (ENSPTRG00000000894) #15	ENSPTRG00000052741	IFI44 (ENSPTRG00000000893) #16	IFI44L (ENSPTRG00000000892)	PTGFR (ENSPTRG00000000891) #18	GIPC2 (ENSPTRG00000051570) #19	DNAJB4 (ENSPTRG00000000889) #21	FUBP1 (ENSPTRG00000000888) #22	NEXN (ENSPTRG00000000886) #23	ENSPTRG00000045301	MIGA1 (ENSPTRG00000000884) #24	USP33 (ENSPTRG00000000882) #25	ZZZ3 (ENSPTRG00000000881) #26	AK5 (ENSPTRG00000000880) #27	ENSPTRG00000050410	PIGK (ENSPTRG00000000878) #28	ST6GALNAC5 (ENSPTRG00000000877) #29	ENSPTRG00000041210	ST6GALNAC3 (ENSPTRG00000000875) #30	ASB17 (ENSPTRG00000000874)	MSH4 (ENSPTRG00000000873) #33	RABGGTB (ENSPTRG00000032439) #34	ENSPTRG00000040641
Chimpanzee	MODERN SPECIES	10	ENSPTRG00000043646	ADGRE1 (ENSPTRG00000010379)	VAV1 (ENSPTRG00000010378)	SH2D3A (ENSPTRG00000010377)	TRIP10 (ENSPTRG00000010376)	GPR108 (ENSPTRG00000010375)	C3 (ENSPTRG00000010373)	TNFSF14 (ENSPTRG00000010372)	CD70 (ENSPTRG00000040770)	TNFSF9 (ENSPTRG00000043305)	TUBB4A (ENSPTRG00000010369)	DENND1C (ENSPTRG00000029159)	CRB3 (ENSPTRG00000010367)	SLC25A23 (ENSPTRG00000010366)	SLC25A41 (ENSPTRG00000010365)	KHSRP (ENSPTRG00000010364) #22	GTF2F1 (ENSPTRG00000010362)	PSPN (ENSPTRG00000045539)	ALKBH7 (ENSPTRG00000010360)	CLPP (ENSPTRG00000010359)	ACER1 (ENSPTRG00000010358)	ENSPTRG00000045179	MLLT1 (ENSPTRG00000010356)	ACSBG2 (ENSPTRG00000010354)	RFX2 (ENSPTRG00000010352)	RANBP3 (ENSPTRG00000010351)	CAPS (ENSPTRG00000010350)	VMAC (ENSPTRG00000010349)	NDUFA11 (ENSPTRG00000029161)	FUT3 (ENSPTRG00000010346)	FUT5 (ENSPTRG00000010347)
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES		ENSGGOG00000039232	ENSGGOG00000038622	PRKACB (ENSGGOG00000027086) #11	TTLL7 (ENSGGOG00000028394) #12	ENSGGOG00000042078	ADGRL2 (ENSGGOG00000016317) #14	ENSGGOG00000028020	ENSGGOG00000025574	ADGRL4 (ENSGGOG00000026803) #15	IFI44 (ENSGGOG00000013663) #16	ENSGGOG00000039692	IFI44L (ENSGGOG00000013652)	PTGFR (ENSGGOG00000014499) #18	GIPC2 (ENSGGOG00000004987) #19	DNAJB4 (ENSGGOG00000004719) #21	ENSGGOG00000027554 #22	NEXN (ENSGGOG00000034812) #23	MIGA1 (ENSGGOG00000017058) #24	USP33 (ENSGGOG00000007543) #25	ZZZ3 (ENSGGOG00000009242) #26	AK5 (ENSGGOG00000014497) #27	ENSGGOG00000027673	PIGK (ENSGGOG00000009240) #28	ENSGGOG00000036290	ST6GALNAC5 (ENSGGOG00000005452) #29	TPI1 (ENSGGOG00000023036)	ST6GALNAC3 (ENSGGOG00000001465) #30	ASB17 (ENSGGOG00000003221)	MSH4 (ENSGGOG00000044071) #33	RABGGTB (ENSGGOG00000004675) #34	ENSGGOG00000024667
Gorilla	MODERN SPECIES	10	ENSGGOG00000044153	ADGRE1 (ENSGGOG00000007858)	VAV1 (ENSGGOG00000012257)	SH2D3A (ENSGGOG00000012243)	ENSGGOG00000012222	GPR108 (ENSGGOG00000013176)	C3 (ENSGGOG00000013159)	TNFSF14 (ENSGGOG00000015906)	CD70 (ENSGGOG00000009206)	TNFSF9 (ENSGGOG00000023927)	TUBB4A (ENSGGOG00000027067)	DENND1C (ENSGGOG00000007075)	CRB3 (ENSGGOG00000007070)	SLC25A23 (ENSGGOG00000007058)	ENSGGOG00000007048	KHSRP (ENSGGOG00000007028) #22	GTF2F1 (ENSGGOG00000000318)	PSPN (ENSGGOG00000000316)	ALKBH7 (ENSGGOG00000027915)	ENSGGOG00000011638	ACER1 (ENSGGOG00000010886)	ENSGGOG00000040780	MLLT1 (ENSGGOG00000010872)	ACSBG2 (ENSGGOG00000026850)	RFX2 (ENSGGOG00000009633)	RANBP3 (ENSGGOG00000006300)	ENSGGOG00000006292	VMAC (ENSGGOG00000038181)	NDUFA11 (ENSGGOG00000006279)	FUT5 (ENSGGOG00000006269)	FUT3 (ENSGGOG00000006272)
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000156051.lc #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000156051.lc #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000156051.lc #22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000156051.lc #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000156051.lc #22
Drill	MODERN SPECIES	1235									IFI44 (ENSMLEG00000043176) #16	IFI44L (ENSMLEG00000025798)	ENSMLEG00000023136	PTGFR (ENSMLEG00000031242) #18	ENSMLEG00000034101	GIPC2 (ENSMLEG00000035777) #19	DNAJB4 (ENSMLEG00000042129) #21	ENSMLEG00000032973 #22	NEXN (ENSMLEG00000042491) #23	MIGA1 (ENSMLEG00000041339) #24	USP33 (ENSMLEG00000040903) #25	ZZZ3 (ENSMLEG00000038008) #26	ENSMLEG00000008825 #27
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00950000183005.b.c.b	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a	ENSGT00950000182993.A.a
Cercopithecinae_d	ANCESTRAL SPECIES	22		ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a	ENSGT00950000182993.A.a
Drill	MODERN SPECIES	1534			ADGRE1 (ENSMLEG00000028603)	VAV1 (ENSMLEG00000029419)	SH2D3A (ENSMLEG00000043148)	TRIP10 (ENSMLEG00000037606)	ENSMLEG00000036455	C3 (ENSMLEG00000030923)	TNFSF14 (ENSMLEG00000043307)	CD70 (ENSMLEG00000016471)	TUBB4A (ENSMLEG00000030013)	DENND1C (ENSMLEG00000039863)	CRB3 (ENSMLEG00000034520)	SLC25A23 (ENSMLEG00000040513)	SLC25A41 (ENSMLEG00000033366)	KHSRP (ENSMLEG00000030501) #22	GTF2F1 (ENSMLEG00000027908)	PSPN (ENSMLEG00000036794)	ALKBH7 (ENSMLEG00000039193)	CLPP (ENSMLEG00000022592)	ACER1 (ENSMLEG00000042127)	MLLT1 (ENSMLEG00000034524)	ACSBG2 (ENSMLEG00000021100)	RFX2 (ENSMLEG00000025063)	RANBP3 (ENSMLEG00000028374)	CAPS (ENSMLEG00000036098)	VMAC (ENSMLEG00000041920)	NDUFA11 (ENSMLEG00000028488)	FUT3 (ENSMLEG00000037551)	ENSMLEG00000036792	DUS3L (ENSMLEG00000043222)
Sooty mangabey	MODERN SPECIES	177		ADGRE1 (ENSCATG00000024272)	VAV1 (ENSCATG00000033046)	SH2D3A (ENSCATG00000040346)	TRIP10 (ENSCATG00000039125)	ENSCATG00000040475	C3 (ENSCATG00000021880)	TNFSF14 (ENSCATG00000034862)	CD70 (ENSCATG00000013090)	TNFSF9 (ENSCATG00000032350)	TUBB4A (ENSCATG00000032861)	DENND1C (ENSCATG00000016215)	CRB3 (ENSCATG00000036281)	SLC25A23 (ENSCATG00000033633)	SLC25A41 (ENSCATG00000035228)	KHSRP (ENSCATG00000036458) #22	ENSCATG00000034000	PSPN (ENSCATG00000035142)	ALKBH7 (ENSCATG00000030199)	CLPP (ENSCATG00000032343)	ACER1 (ENSCATG00000026770)	MLLT1 (ENSCATG00000036992)	ACSBG2 (ENSCATG00000033762)	RFX2 (ENSCATG00000040945)	RANBP3 (ENSCATG00000044346)	CAPS (ENSCATG00000030192)	VMAC (ENSCATG00000041336)	ENSCATG00000041060	ENSCATG00000040235	ENSCATG00000040267	NRTN (ENSCATG00000038604)
Macaca	ANCESTRAL SPECIES	24	ENSGT00390000002019	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a
Pig-tailed macaque	MODERN SPECIES	76	ENSMNEG00000018748	ADGRE1 (ENSMNEG00000036876)	VAV1 (ENSMNEG00000033569)	SH2D3A (ENSMNEG00000043229)	TRIP10 (ENSMNEG00000032693)	ENSMNEG00000027173	C3 (ENSMNEG00000039015)	TNFSF14 (ENSMNEG00000041885)	CD70 (ENSMNEG00000032223)	TNFSF9 (ENSMNEG00000032348)	TUBB4A (ENSMNEG00000038280)	DENND1C (ENSMNEG00000029798)	CRB3 (ENSMNEG00000040789)	SLC25A23 (ENSMNEG00000033667)	SLC25A41 (ENSMNEG00000031428)	KHSRP (ENSMNEG00000036982) #22	GTF2F1 (ENSMNEG00000038838)	PSPN (ENSMNEG00000039281)	ALKBH7 (ENSMNEG00000029223)	ENSMNEG00000041705	ACER1 (ENSMNEG00000029728)	MLLT1 (ENSMNEG00000031529)	ACSBG2 (ENSMNEG00000044133)	RFX2 (ENSMNEG00000030375)	RANBP3 (ENSMNEG00000036230)	CAPS (ENSMNEG00000041627)	VMAC (ENSMNEG00000037094)	NDUFA11 (ENSMNEG00000004413)	ENSMNEG00000011100	ENSMNEG00000032896	NRTN (ENSMNEG00000019173)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000002019	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT01100000263508.A.d.e.a.b	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00950000182993.A.a
Rhesus	MODERN SPECIES	10	ENSMMUG00000005589	ADGRE1 (ENSMMUG00000001220)	VAV1 (ENSMMUG00000019314)	SH2D3A (ENSMMUG00000008699)	TRIP10 (ENSMMUG00000008697)	ENSMMUG00000008695	C3 (ENSMMUG00000008693)	TNFSF14 (ENSMMUG00000051945)	CD70 (ENSMMUG00000011042)	TNFSF9 (ENSMMUG00000001985)	TUBB4A (ENSMMUG00000014216)	DENND1C (ENSMMUG00000005600)	CRB3 (ENSMMUG00000050193)	SLC25A23 (ENSMMUG00000005598)	SLC25A41 (ENSMMUG00000016526)	KHSRP (ENSMMUG00000005597) #22	PSPN (ENSMMUG00000053244)	ALKBH7 (ENSMMUG00000000054)	CLPP (ENSMMUG00000028914)	ACER1 (ENSMMUG00000005698)	ENSMMUG00000063389	MLLT1 (ENSMMUG00000005697)	ACSBG2 (ENSMMUG00000018937)	RFX2 (ENSMMUG00000011967)	RANBP3 (ENSMMUG00000011964)	CAPS (ENSMMUG00000011963)	NDUFA11 (ENSMMUG00000016665)	FUT5 (ENSMMUG00000050702)	NRTN (ENSMMUG00000058031)	DUS3L (ENSMMUG00000031027)	LONP1 (ENSMMUG00000020707)
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000036004	ENSMFAG00000064065	ADGRE1 (ENSMFAG00000039564)	VAV1 (ENSMFAG00000039752)	SH2D3A (ENSMFAG00000002801)	TRIP10 (ENSMFAG00000039732)	GPR108 (ENSMFAG00000038700)	ENSMFAG00000044731	TNFSF14 (ENSMFAG00000003750)	CD70 (ENSMFAG00000041094)	TUBB4A (ENSMFAG00000059050)	CRB3 (ENSMFAG00000040330)	DENND1C (ENSMFAG00000031978)	SLC25A23 (ENSMFAG00000039503)	ENSMFAG00000063742	KHSRP (ENSMFAG00000000292) #22	GTF2F1 (ENSMFAG00000003355)	ALKBH7 (ENSMFAG00000045978)	CLPP (ENSMFAG00000063171)	ACER1 (ENSMFAG00000043465)	ENSMFAG00000064713	MLLT1 (ENSMFAG00000039501)	ACSBG2 (ENSMFAG00000033353)	RFX2 (ENSMFAG00000036589)	RANBP3 (ENSMFAG00000031395)	CAPS (ENSMFAG00000044715)	ENSMFAG00000003802	FUT5 (ENSMFAG00000038995)	FUT3 (ENSMFAG00000003882)	NRTN (ENSMFAG00000038415)	PRR22 (ENSMFAG00000031910)
Vervet Monkey	MODERN SPECIES	25	ENSCSAG00000018825	ADGRE1 (ENSCSAG00000009172)	VAV1 (ENSCSAG00000009214)	SH2D3A (ENSCSAG00000009225)	TRIP10 (ENSCSAG00000009241)	GPR108 (ENSCSAG00000009304)	C3 (ENSCSAG00000009476)	TNFSF14 (ENSCSAG00000009528)	CD70 (ENSCSAG00000009543)	TNFSF9 (ENSCSAG00000009573)	TUBB4A (ENSCSAG00000009578)	DENND1C (ENSCSAG00000009587)	CRB3 (ENSCSAG00000009594)	SLC25A23 (ENSCSAG00000009602)	SLC25A41 (ENSCSAG00000009616)	KHSRP (ENSCSAG00000009626) #22	ENSCSAG00000009656	PSPN (ENSCSAG00000009668)	ALKBH7 (ENSCSAG00000009674)	CLPP (ENSCSAG00000009679)	ACER1 (ENSCSAG00000009688)	MLLT1 (ENSCSAG00000009698)	ACSBG2 (ENSCSAG00000009753)	RFX2 (ENSCSAG00000009771)	ENSCSAG00000009781	RANBP3 (ENSCSAG00000009796)	ENSCSAG00000009786	ENSCSAG00000018824	VMAC (ENSCSAG00000018823)	NDUFA11 (ENSCSAG00000009802)	FUT5 (ENSCSAG00000018822)
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446.c	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00440000033329.a.a.b.c.b	ENSGT00390000006244	ENSGT00940000161972.d.a	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051.mc.a #22	ENSGT00440000038032.q	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000167406	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b
Golden snub-nosed monkey	MODERN SPECIES	1318		VAV1 (ENSRROG00000030844)	SH2D3A (ENSRROG00000040767)	TRIP10 (ENSRROG00000037565)	ENSRROG00000038025	C3 (ENSRROG00000044340)	TNFSF14 (ENSRROG00000041901)	CD70 (ENSRROG00000040655)	ENSRROG00000007343	TNFSF9 (ENSRROG00000043525)	TUBB4A (ENSRROG00000010011)	DENND1C (ENSRROG00000036222)	CRB3 (ENSRROG00000035164)	SLC25A23 (ENSRROG00000009609)	SLC25A41 (ENSRROG00000044292)	KHSRP (ENSRROG00000031782) #22	ENSRROG00000020433	ALKBH7 (ENSRROG00000043210)	CLPP (ENSRROG00000042048)	ACER1 (ENSRROG00000022472)	MLLT1 (ENSRROG00000042162)	ACSBG2 (ENSRROG00000035513)	RFX2 (ENSRROG00000028821)	RANBP3 (ENSRROG00000032677)	CAPS (ENSRROG00000043353)	VMAC (ENSRROG00000031275)	NDUFA11 (ENSRROG00000001285)	FUT3 (ENSRROG00000032467)	ENSRROG00000043951	NRTN (ENSRROG00000005450)	DUS3L (ENSRROG00000037008)
Black snub-nosed monkey	MODERN SPECIES	631	ADGRE1 (ENSRBIG00000031436)	ENSRBIG00000016719	VAV1 (ENSRBIG00000040884)	SH2D3A (ENSRBIG00000033277)	TRIP10 (ENSRBIG00000030391)	ENSRBIG00000044563	C3 (ENSRBIG00000027932)	ENSRBIG00000036454	CD70 (ENSRBIG00000042145)	ENSRBIG00000035725	TNFSF9 (ENSRBIG00000029859)	TUBB4A (ENSRBIG00000028889)	DENND1C (ENSRBIG00000036859)	CRB3 (ENSRBIG00000019680)	SLC25A23 (ENSRBIG00000031632)	KHSRP (ENSRBIG00000041605) #22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000156051.mc.b #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000156051.mc.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000156051.mc.b #22
Macaca	ANCESTRAL SPECIES																	ENSGT00940000156051.mc.b #22
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000017443.s.b	ENSGT00390000004438	ENSGT01100000263509.a.a.a.c.b.a	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b	ENSGT01000000214430.a.a.a.a.a.a.c	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.b.a	ENSGT01000000214430.a.a.a.a.a.b.a.a.b	ENSGT01000000214430.a.a.a.a.a.b.b.a.a	ENSGT00940000154359.e	ENSGT01000000214430.a.a.a.a.a.b.b.b.b	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.h	ENSGT01000000214430.a.a.a.a.a.a.d	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.g	ENSGT00940000156051.mc.b #22	ENSGT00950000182991.B.yb.a	ENSGT00940000162423	ENSGT00940000160640	ENSGT00910000147619	ENSGT00940000156823.e	ENSGT00390000017601	ENSGT00390000017010	ENSGT00550000074944	ENSGT00940000161278	ENSGT00390000007109	ENSGT00940000158840	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.a.b.b.a	ENSGT00390000010786	ENSGT01050000244898.a.a.a.b	ENSGT01000000214430.b
Rhesus	MODERN SPECIES	6	ENSMMUG00000006895	ENSMMUG00000061078	HACD4 (ENSMMUG00000019068)	FOCAD (ENSMMUG00000019070)	IFNB1 (ENSMMUG00000019067)	IFNW1 (ENSMMUG00000058193)	ENSMMUG00000058435	IFNA10 (ENSMMUG00000058565)	ENSMMUG00000052729	IFNA14 (ENSMMUG00000058900)	KLHL9 (ENSMMUG00000010959)	IFNA6 (ENSMMUG00000054514)	ENSMMUG00000055493	IFNA8 (ENSMMUG00000063809)	IFNA13 (ENSMMUG00000051298)	ENSMMUG00000063104 #22	MTAP (ENSMMUG00000001137)	CDKN2B (ENSMMUG00000001134)	ENSMMUG00000065070	DMRTA1 (ENSMMUG00000054138)	ENSMMUG00000053595	ELAVL2 (ENSMMUG00000010038)	IZUMO3 (ENSMMUG00000059096)	TUSC1 (ENSMMUG00000059471)	ENSMMUG00000059255	CAAP1 (ENSMMUG00000006073)	PLAA (ENSMMUG00000064752)	LRRC19 (ENSMMUG00000006079)	IFT74 (ENSMMUG00000006076)	TEK (ENSMMUG00000006080)	ENSMMUG00000053713
Crab-eating macaque	MODERN SPECIES	6	ENSMFAG00000048615	HACD4 (ENSMFAG00000059691)	IFNB1 (ENSMFAG00000029241)	IFNW1 (ENSMFAG00000048122)	ENSMFAG00000055488	ENSMFAG00000050022	ENSMFAG00000063486	ENSMFAG00000061198	IFNA14 (ENSMFAG00000048461)	KLHL9 (ENSMFAG00000061614)	IFNA6 (ENSMFAG00000017071)	ENSMFAG00000049642	ENSMFAG00000052004	IFNA8 (ENSMFAG00000053442)	ENSMFAG00000047167	ENSMFAG00000057421 #22	ENSMFAG00000048577	ENSMFAG00000058938	ENSMFAG00000001876	ELAVL2 (ENSMFAG00000039694)	IZUMO3 (ENSMFAG00000031898)	CAAP1 (ENSMFAG00000036918)	PLAA (ENSMFAG00000039014)	LRRC19 (ENSMFAG00000034288)	IFT74 (ENSMFAG00000001877)	TEK (ENSMFAG00000045003)	ENSMFAG00000064223	EQTN (ENSMFAG00000043911)	IFNK (ENSMFAG00000052624)	MOB3B (ENSMFAG00000041346)	C9orf72 (ENSMFAG00000001152)
Atlantogenata	ANCESTRAL SPECIES	124			ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A
Afrotheria	ANCESTRAL SPECIES	182										ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A
Afrotheria_a	ANCESTRAL SPECIES	223										ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693
Hyrax	MODERN SPECIES	7286															SLC25A41 (ENSPCAG00000000269)	KHSRP (ENSPCAG00000000246) #22	ENSPCAG00000000241
Elephant	MODERN SPECIES	46	NRTN (ENSLAFG00000000500)	ENSLAFG00000023311	ENSLAFG00000010081	ENSLAFG00000013441	NDUFA11 (ENSLAFG00000028920)	VMAC (ENSLAFG00000005431)	CAPS (ENSLAFG00000028433)	RANBP3 (ENSLAFG00000001841)	ENSLAFG00000013350	ENSLAFG00000027235	CD70 (ENSLAFG00000008781)	TNFSF9 (ENSLAFG00000028534)	CRB3 (ENSLAFG00000013740)	SLC25A23 (ENSLAFG00000013828)	SLC25A41 (ENSLAFG00000028633)	KHSRP (ENSLAFG00000002426) #22	ENSLAFG00000020872	ENSLAFG00000030192	ENSLAFG00000003851	ALKBH7 (ENSLAFG00000003852)	CLPP (ENSLAFG00000027937)	ACER1 (ENSLAFG00000012500)	MLLT1 (ENSLAFG00000026589)	ACSBG2 (ENSLAFG00000006705)	TNFSF14 (ENSLAFG00000021999)	C3 (ENSLAFG00000010462)	TRIP10 (ENSLAFG00000010470)	SH2D3A (ENSLAFG00000010477)	VAV1 (ENSLAFG00000018550)	ADGRE1 (ENSLAFG00000004801)	ENSLAFG00000016979
Tenrec	MODERN SPECIES	38															ENSETEG00000004799	KHSRP (ENSETEG00000004793) #22
Xenarthra	ANCESTRAL SPECIES	362											ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000164043
Sloth	MODERN SPECIES	17																ENSCHOG00000009251 #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2998	SUCLA2 (ENSDNOG00000016140)	ENSDNOG00000037553	NUDT15 (ENSDNOG00000023617)	ENSDNOG00000018064	ENSDNOG00000032956	ITM2B (ENSDNOG00000039110)	LPAR6 (ENSDNOG00000013367)	RB1 (ENSDNOG00000013345)	RCBTB2 (ENSDNOG00000037693)	ENSDNOG00000001513	IFI44 (ENSDNOG00000007317) #16	IFI44L (ENSDNOG00000033462)	PTGFR (ENSDNOG00000031456) #18	GIPC2 (ENSDNOG00000010996) #19	DNAJB4 (ENSDNOG00000040813) #21	ENSDNOG00000013200 #22	NEXN (ENSDNOG00000013409) #23	MIGA1 (ENSDNOG00000044717) #24	USP33 (ENSDNOG00000000464) #25	ENSDNOG00000000463 #26	ENSDNOG00000000459 #27	ENSDNOG00000033078 #27	ENSDNOG00000039352	PIGK (ENSDNOG00000007316) #28	ST6GALNAC5 (ENSDNOG00000000741) #29	ENSDNOG00000004293 #30	ENSDNOG00000047820	ENSDNOG00000036049
Armadillo	MODERN SPECIES	757										ENSDNOG00000034894	TUBB4A (ENSDNOG00000044946)	CRB3 (ENSDNOG00000016609)	DENND1C (ENSDNOG00000036339)	SLC25A23 (ENSDNOG00000044731)	SLC25A41 (ENSDNOG00000041952)	KHSRP (ENSDNOG00000046507) #22	PSPN (ENSDNOG00000047434)	ALKBH7 (ENSDNOG00000005049)	CLPP (ENSDNOG00000040919)	ENSDNOG00000016623	MLLT1 (ENSDNOG00000045050)	ENSDNOG00000046889
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00940000163693	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A.p	ENSGT00940000155332.A.o	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00550000075134
Opossum	MODERN SPECIES	2	VAV1 (ENSMODG00000002314)	SH2D3A (ENSMODG00000002291)	TRIP10 (ENSMODG00000002259)	ENSMODG00000002176	ENSMODG00000002151	C3 (ENSMODG00000002143)	TNFSF14 (ENSMODG00000002091)	ENSMODG00000024010	ENSMODG00000001954	ENSMODG00000002060	ENSMODG00000002055	ENSMODG00000024011	DENND1C (ENSMODG00000002048)	ENSMODG00000002023	SLC25A41 (ENSMODG00000001959)	KHSRP (ENSMODG00000001952) #22	ENSMODG00000051201	ENSMODG00000001941	ENSMODG00000037547	ACER1 (ENSMODG00000001913)	MLLT1 (ENSMODG00000001886)	ENSMODG00000049985	ENSMODG00000001431	RFX2 (ENSMODG00000001398)	RANBP3 (ENSMODG00000001371)	ENSMODG00000001357	VMAC (ENSMODG00000049884)	ENSMODG00000001343	DUS3L (ENSMODG00000001339)	ENSMODG00000042676	ENSMODG00000001314
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A.p	ENSGT00940000155332.A.o	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	3												ENSSHAG00000002658 #18	GIPC2 (ENSSHAG00000023650) #19	ENSSHAG00000027865	DNAJB4 (ENSSHAG00000006018) #21	ENSSHAG00000005367 #22	NEXN (ENSSHAG00000004895) #23	MIGA1 (ENSSHAG00000025548) #24	USP33 (ENSSHAG00000001467) #25	ZZZ3 (ENSSHAG00000002082) #26	AK5 (ENSSHAG00000002728) #27	PIGK (ENSSHAG00000031205) #28	ST6GALNAC5 (ENSSHAG00000005763) #29	ENSSHAG00000003277 #30	MSH4 (ENSSHAG00000006959) #33	ASB17 (ENSSHAG00000006781)	ENSSHAG00000007705	SLC44A5 (ENSSHAG00000004706) #36	LHX8 (ENSSHAG00000003271) #37	ENSSHAG00000024726	CRYZ (ENSSHAG00000030527)
Tasmanian devil	MODERN SPECIES		ENSSHAG00000006472	ENSSHAG00000006305	VAV1 (ENSSHAG00000004661)	SH2D3A (ENSSHAG00000004505)	TRIP10 (ENSSHAG00000004338)	GPR108 (ENSSHAG00000003841)	ENSSHAG00000003735	C3 (ENSSHAG00000028091)	ENSSHAG00000024632	ENSSHAG00000025838	ENSSHAG00000020579	DENND1C (ENSSHAG00000011768)	ENSSHAG00000023441	SLC25A23 (ENSSHAG00000011678)	SLC25A41 (ENSSHAG00000011643)	KHSRP (ENSSHAG00000011383) #22	ENSSHAG00000022420	ENSSHAG00000030352	ENSSHAG00000010846	ENSSHAG00000029162	ALKBH7 (ENSSHAG00000026703)	CLPP (ENSSHAG00000010777)	MLLT1 (ENSSHAG00000009440)	ENSSHAG00000008859	ENSSHAG00000008517	RFX2 (ENSSHAG00000005810)	RANBP3 (ENSSHAG00000027846)	CAPS (ENSSHAG00000021620)	ENSSHAG00000021266	NRTN (ENSSHAG00000028408)	DUS3L (ENSSHAG00000014156)
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A.p	ENSGT00940000155332.A.o	ENSGT01050000244879.a.a.a	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434	ENSGT00940000163125
Wallaby	MODERN SPECIES	564																KHSRP (ENSMEUG00000016601) #22
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000162419	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032.hb	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00730000110920.b.a.a	ENSGT00940000158800	ENSGT00940000155332.A.p	ENSGT00940000155332.A.o	ENSGT01050000244879.a.a.a	ENSGT00940000158588.q	ENSGT00940000162442	ENSGT00390000007212	ENSGT00390000012434.h	ENSGT00940000163125
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	733																ENSVURG00010016137 #22
Common wonbat	MODERN SPECIES	734																ENSVURG00010016189 #22
koala	DUPLICATION
koala	MODERN SPECIES	182												PTGFR (ENSPCIG00000036710) #18	ENSPCIG00000022972	GIPC2 (ENSPCIG00000022976) #19	DNAJB4 (ENSPCIG00000022981) #21	ENSPCIG00000022984 #22	NEXN (ENSPCIG00000023009) #23	MIGA1 (ENSPCIG00000023517) #24	USP33 (ENSPCIG00000023519) #25	ZZZ3 (ENSPCIG00000023520) #26	AK5 (ENSPCIG00000033690) #27	PIGK (ENSPCIG00000006606) #28	ST6GALNAC5 (ENSPCIG00000006603) #29	ENSPCIG00000016609	ENSPCIG00000008604 #30	ASB17 (ENSPCIG00000010667)	MSH4 (ENSPCIG00000010671) #33	RABGGTB (ENSPCIG00000010676) #34	ENSPCIG00000010712 #35	SLC44A5 (ENSPCIG00000007763) #36	LHX8 (ENSPCIG00000024203) #37
koala	MODERN SPECIES	214		ADGRE1 (ENSPCIG00000028194)	VAV1 (ENSPCIG00000016668)	SH2D3A (ENSPCIG00000016660)	TRIP10 (ENSPCIG00000016659)	GPR108 (ENSPCIG00000016658)	ENSPCIG00000016656	C3 (ENSPCIG00000016648)	TNFSF14 (ENSPCIG00000016643)	ENSPCIG00000016641	ENSPCIG00000016640	ENSPCIG00000016632	CRB3 (ENSPCIG00000033282)	SLC25A23 (ENSPCIG00000016625)	SLC25A41 (ENSPCIG00000016624)	KHSRP (ENSPCIG00000025516) #22	ENSPCIG00000004565	ENSPCIG00000003850	ENSPCIG00000034364	ALKBH7 (ENSPCIG00000016623)	CLPP (ENSPCIG00000016621)	ACER1 (ENSPCIG00000016619)	MLLT1 (ENSPCIG00000032521)	ENSPCIG00000019691	ENSPCIG00000013268	RFX2 (ENSPCIG00000008454)	ENSPCIG00000008455	CAPS (ENSPCIG00000008456)	VMAC (ENSPCIG00000008457)	ENSPCIG00000031677	ENSPCIG00000008459
Platypus	DUPLICATION
Platypus	MODERN SPECIES	15	CTBS (ENSOANG00000036257)	ENSOANG00000044361	ENSOANG00000021004	RPF1 (ENSOANG00000043157) #7	ENSOANG00000014419 #9	SAMD13 (ENSOANG00000049080) #10	ENSOANG00000038831	ENSOANG00000041206	TTLL7 (ENSOANG00000005061) #12	ADGRL2 (ENSOANG00000004818) #14	ENSOANG00000047211	ADGRL4 (ENSOANG00000014561) #15	PTGFR (ENSOANG00000004586) #18	GIPC2 (ENSOANG00000045789) #19	DNAJB4 (ENSOANG00000009776) #21	ENSOANG00000009777 #22	NEXN (ENSOANG00000009778) #23	MIGA1 (ENSOANG00000005105) #24	USP33 (ENSOANG00000002941) #25	ZZZ3 (ENSOANG00000015757) #26	AK5 (ENSOANG00000021517) #27	ENSOANG00000046302 #28	ST6GALNAC5 (ENSOANG00000015358) #29	ENSOANG00000047181 #30	ENSOANG00000030326 #30	ASB17 (ENSOANG00000009850)	MSH4 (ENSOANG00000014868) #33	ENSOANG00000008205 #35	SLC44A5 (ENSOANG00000020242) #36	LHX8 (ENSOANG00000013288) #37	TYW3 (ENSOANG00000039270)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	84	ENSOANG00000037657	ENSOANG00000011238	VAV1 (ENSOANG00000014870)	GPR108 (ENSOANG00000045248)	ENSOANG00000006101	ENSOANG00000006102	ENSOANG00000006107	ENSOANG00000006581	ENSOANG00000039080	ENSOANG00000051104	ENSOANG00000041505	ENSOANG00000044041	ENSOANG00000008407	ENSOANG00000042448	SLC25A23 (ENSOANG00000001661)	ENSOANG00000000261 #22	ENSOANG00000000264	ENSOANG00000044176	GTF2F1 (ENSOANG00000006110)	ENSOANG00000000620	ALKBH7 (ENSOANG00000045418)	CLPP (ENSOANG00000012221)	MAP2K7 (ENSOANG00000015355)	ENSOANG00000049040	LRRC8E (ENSOANG00000043083)	ENSOANG00000041203	ENSOANG00000036052	ENSOANG00000036950	ENSOANG00000030515	ENSOANG00000009700	ENSOANG00000038482
Platypus	MODERN SPECIES	35						THAP11Y (ENSOANG00000039397)	ENSOANG00000045879	ENSOANG00000039507	ENSOANG00000043592	RYBP (ENSOANG00000050562)	ENSOANG00000038226	ENSOANG00000043879	ENSOANG00000038599	ENSOANG00000045913	FEM1C (ENSOANG00000037326)	ENSOANG00000045434 #22	CNBP (ENSOANG00000040160)	AKAP8LY (ENSOANG00000047029)	ENSOANG00000044776	ENSOANG00000037290	ENSOANG00000037198	ENSOANG00000038603	ENSOANG00000048071	ENSOANG00000046095	AMHY (ENSOANG00000049951)	STK11Y (ENSOANG00000050581)	PPP4R2Y (ENSOANG00000038432)	ENSOANG00000047700	ENSOANG00000045767	ENSOANG00000047215	ENSOANG00000042739
Sauria	ANCESTRAL SPECIES	22	ENSGT00530000063936.a ##10	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT00390000009916	ENSGT00940000166147	ENSGT01030000234559.a.a.b.a ##18	ENSGT00390000003420.a.a ##19	ENSGT00940000160312	ENSGT00940000167422	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00390000009016	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740
Lepidosauria	ANCESTRAL SPECIES	81				ENSGT01030000234575.c.a.b	ENSGT00940000161354.a	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.b	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b
Episquamata	ANCESTRAL SPECIES	6	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a ##8	ENSGT00940000156887	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b
Laterata	ANCESTRAL SPECIES	7	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a ##8	ENSGT00940000156887	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	8	VAV1 (ENSPMRG00000023724)	SH2D3A (ENSPMRG00000023731)	TRIP10 (ENSPMRG00000023734)	ENSPMRG00000023739	ENSPMRG00000023764	ENSPMRG00000023800	TNFSF14 (ENSPMRG00000023859)	ENSPMRG00000023860	ENSPMRG00000023861	ENSPMRG00000023863	ENSPMRG00000023864	ENSPMRG00000023865	ENSPMRG00000023866	SLC25A23 (ENSPMRG00000023867)	ENSPMRG00000023868	ENSPMRG00000023869 #22	ENSPMRG00000023870	ENSPMRG00000023871 #22	ENSPMRG00000023872	GTF2F1 (ENSPMRG00000023873)	PSPN (ENSPMRG00000023874)	ALKBH7 (ENSPMRG00000023875)	CLPP (ENSPMRG00000023877)	ENSPMRG00000023878	ENSPMRG00000023879	ENSPMRG00000023881	RFX1 (ENSPMRG00000023885)	DCAF15 (ENSPMRG00000023890)	PODNL1 (ENSPMRG00000023893)	CC2D1A (ENSPMRG00000023894)	NANOS3 (ENSPMRG00000023896)
Common wall lizard	MODERN SPECIES	8	TRIP10 (ENSPMRG00000023734)	ENSPMRG00000023739	ENSPMRG00000023764	ENSPMRG00000023800	TNFSF14 (ENSPMRG00000023859)	ENSPMRG00000023860	ENSPMRG00000023861	ENSPMRG00000023863	ENSPMRG00000023864	ENSPMRG00000023865	ENSPMRG00000023866	SLC25A23 (ENSPMRG00000023867)	ENSPMRG00000023868	ENSPMRG00000023869 #22	ENSPMRG00000023870	ENSPMRG00000023871 #22	ENSPMRG00000023872	GTF2F1 (ENSPMRG00000023873)	PSPN (ENSPMRG00000023874)	ALKBH7 (ENSPMRG00000023875)	CLPP (ENSPMRG00000023877)	ENSPMRG00000023878	ENSPMRG00000023879	ENSPMRG00000023881	RFX1 (ENSPMRG00000023885)	DCAF15 (ENSPMRG00000023890)	PODNL1 (ENSPMRG00000023893)	CC2D1A (ENSPMRG00000023894)	NANOS3 (ENSPMRG00000023896)	ZSWIM4 (ENSPMRG00000023897)	C19orf53 (ENSPMRG00000023898)
Argentine black and white tegu	MODERN SPECIES	85										TNFSF14 (ENSSMRG00000017096)	ENSSMRG00000017093	ENSSMRG00000017091	ENSSMRG00000017088	CRB3 (ENSSMRG00000017085)	SLC25A23 (ENSSMRG00000017083)	KHSRP (ENSSMRG00000017081) #22	ENSSMRG00000017080	GTF2F1 (ENSSMRG00000017079)	PSPN (ENSSMRG00000017075)	ALKBH7 (ENSSMRG00000017074)	CLPP (ENSSMRG00000017071)	ENSSMRG00000017070	ENSSMRG00000017068	ENSSMRG00000017066	RLN3 (ENSSMRG00000017065)	RFX1 (ENSSMRG00000017045)	DCAF15 (ENSSMRG00000017041)	ENSSMRG00000017032	PODNL1 (ENSSMRG00000017021)	CC2D1A (ENSSMRG00000016838)	NANOS3 (ENSSMRG00000016836)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00390000006387	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a ##8	ENSGT00940000156887	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000165414	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000173726	ENSGT00940000156051 #22	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102
Elapidae	ANCESTRAL SPECIES	21	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a ##8	ENSGT00940000156887	ENSGT00940000159125.d	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000165414	ENSGT00940000154063.C.a.b.pb	ENSGT00940000154063.C.a.b.qb.a	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00950000183101.a.b.a.k	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b
Indian cobra	MODERN SPECIES	1	DNASE2 (ENSNNAG00000011869) ##8	SMARCA4 (ENSNNAG00000011180)	VAV1 (ENSNNAG00000009811)	SH2D3A (ENSNNAG00000009558)	TRIP10 (ENSNNAG00000009000)	ENSNNAG00000008895	ENSNNAG00000008828	ENSNNAG00000008657	ENSNNAG00000008178	ENSNNAG00000008112	ENSNNAG00000007830	ENSNNAG00000007760	ENSNNAG00000007666	CRB3 (ENSNNAG00000007632)	ENSNNAG00000007536	KHSRP (ENSNNAG00000007484) #22	ENSNNAG00000007441	GTF2F1 (ENSNNAG00000007411)	PSPN (ENSNNAG00000007400)	ALKBH7 (ENSNNAG00000007389)	CLPP (ENSNNAG00000007375)	ENSNNAG00000007120	ENSNNAG00000019030	RLN3 (ENSNNAG00000019028)	RFX1 (ENSNNAG00000019027)	DCAF15 (ENSNNAG00000019025)	PODNL1 (ENSNNAG00000019023)	CC2D1A (ENSNNAG00000019016)	ZSWIM4 (ENSNNAG00000018999)	C19orf53 (ENSNNAG00000018996)	YJU2B (ENSNNAG00000018993)
Elapidae_a	ANCESTRAL SPECIES	23										ENSGT00940000154063.C.a.b.qb.a	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.b	ENSGT00950000183101.a.b.a.k	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b
Acanthophiinae	ANCESTRAL SPECIES	23										ENSGT00940000154063.C.a.b.qb.a	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.b	ENSGT00950000183101.a.b.a.k	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b
Eastern brown snake	MODERN SPECIES	52										TNFSF14 (ENSPTXG00000006825)	ENSPTXG00000006826	ENSPTXG00000006827	ENSPTXG00000006828	CRB3 (ENSPTXG00000006829)	SLC25A23 (ENSPTXG00000006831)	KHSRP (ENSPTXG00000006832) #22	ENSPTXG00000006833	GTF2F1 (ENSPTXG00000006834)	ALKBH7 (ENSPTXG00000006835)	PSPN (ENSPTXG00000006836)	CLPP (ENSPTXG00000003924)	ENSPTXG00000003932	RLN3 (ENSPTXG00000003968)	RFX1 (ENSPTXG00000004025)	DCAF15 (ENSPTXG00000004026)	PODNL1 (ENSPTXG00000004027)	CC2D1A (ENSPTXG00000004028)	NANOS3 (ENSPTXG00000004029)	ZSWIM4 (ENSPTXG00000004034)	C19orf53 (ENSPTXG00000004048)	YJU2B (ENSPTXG00000004050)
Mainland tiger snake	MODERN SPECIES	167									ENSNSUG00000013339	TNFSF14 (ENSNSUG00000013338)	ENSNSUG00000013337	ENSNSUG00000013335	ENSNSUG00000013334	CRB3 (ENSNSUG00000013333)	SLC25A23 (ENSNSUG00000013332)	KHSRP (ENSNSUG00000013328) #22	ENSNSUG00000013327	GTF2F1 (ENSNSUG00000013325)	PSPN (ENSNSUG00000013324)	ALKBH7 (ENSNSUG00000013323)	CLPP (ENSNSUG00000013322)	ENSNSUG00000013321	ENSNSUG00000013319	RLN3 (ENSNSUG00000013313)	RFX1 (ENSNSUG00000013312)	DCAF15 (ENSNSUG00000013311)	PODNL1 (ENSNSUG00000013309)	CC2D1A (ENSNSUG00000013279)	NANOS3 (ENSNSUG00000013277)	ENSNSUG00000013271	C19orf53 (ENSNSUG00000013270)
Blue-lipped sea krait	MODERN SPECIES	2193																ENSLLTG00000016996 #22
Lizard	MODERN SPECIES	1	ENSACAG00000044724	amtn (ENSACAG00000030518)	fdc-sp (ENSACAG00000024676)	ENSACAG00000013870	ENSACAG00000014078	ENSACAG00000043403	ENSACAG00000028397	ENSACAG00000014253	ENSACAG00000014282	ENSACAG00000017192	TNFSF14 (ENSACAG00000041289)	ENSACAG00000029566	ENSACAG00000036871	ENSACAG00000015247	SLC25A23 (ENSACAG00000015342)	KHSRP (ENSACAG00000015398) #22	ENSACAG00000015548	GTF2F1 (ENSACAG00000015503)	ENSACAG00000040096	PSPN (ENSACAG00000015501)	ENSACAG00000015559	CLPP (ENSACAG00000015591)	ENSACAG00000015627	ENSACAG00000035115	ENSACAG00000044213	ENSACAG00000043208	ENSACAG00000015657	RLN3 (ENSACAG00000034808)	RFX1 (ENSACAG00000015671)	DCAF15 (ENSACAG00000015723)	ENSACAG00000041903
tuatara	MODERN SPECIES	1438												ENSSPUG00000016567	ENSSPUG00000016561	ENSSPUG00000016554	SLC25A23 (ENSSPUG00000016509)	KHSRP (ENSSPUG00000016462) #22	ENSSPUG00000016454	GTF2F1 (ENSSPUG00000016444)	PSPN (ENSSPUG00000016440)	ALKBH7 (ENSSPUG00000016435)	CLPP (ENSSPUG00000016430)	MISP3 (ENSSPUG00000016424)	ENSSPUG00000016419
Archelosauria	ANCESTRAL SPECIES	28	ENSGT00940000153877	ENSGT00940000154382.a.a	ENSGT00530000063936.a ##10	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT00390000009916	ENSGT00940000166147	ENSGT01030000234559.a.a.b.a ##18	ENSGT00390000003420.a.a ##19	ENSGT00940000160312	ENSGT00940000167422	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00390000009016	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740
Archosauria	ANCESTRAL SPECIES	117																ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00390000014585	ENSGT00390000005830
Australian saltwater crocodile	MODERN SPECIES	28	RPF1 (ENSCPRG00005017093) #7	DNASE2B (ENSCPRG00005017097) #8	ENSCPRG00005017105 #9	SAMD13 (ENSCPRG00005017120) #10	ENSCPRG00005017121	ENSCPRG00005017123	TTLL7 (ENSCPRG00005017130) #12	ENSCPRG00005017152	ADGRL2 (ENSCPRG00005017162) #14	ADGRL4 (ENSCPRG00005017183) #15	ENSCPRG00005017191	ENSCPRG00005017197	PTGFR (ENSCPRG00005017199) #18	ENSCPRG00005017203 #19	DNAJB4 (ENSCPRG00005017205) #21	KHSRP (ENSCPRG00005017210) #22	NEXN (ENSCPRG00005017222) #23	MIGA1 (ENSCPRG00005017228) #24	USP33 (ENSCPRG00005017233) #25	ZZZ3 (ENSCPRG00005017240) #26	AK5 (ENSCPRG00005017241) #27	PIGK (ENSCPRG00005017248) #28	ST6GALNAC5 (ENSCPRG00005017250) #29	ST6GALNAC3 (ENSCPRG00005017253) #30	ENSCPRG00005017255 #33	PIF1 (ENSCPRG00005017259)	ENSCPRG00005017262	EBNA1BP2 (ENSCPRG00005017264)	CFAP57 (ENSCPRG00005017266)	TMEM125 (ENSCPRG00005017283)	ENSCPRG00005017285
Aves	ANCESTRAL SPECIES	114																ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00390000014585	ENSGT00390000005830
Neognathae	ANCESTRAL SPECIES	91																ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00390000014585	ENSGT00390000005830
Neognathae_b	ANCESTRAL SPECIES	36	ENSGT00530000063000.a.a.b	ENSGT00390000005605	ENSGT00940000159089	ENSGT00940000158178	ENSGT00980000198857	ENSGT00940000156719	ENSGT00940000163421	ENSGT00530000063679.B	ENSGT00940000155764.C	ENSGT00940000158445	ENSGT00940000160377	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000011740	ENSGT00390000013732	ENSGT00530000063615.b	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a	ENSGT00390000002121	ENSGT00940000159016	ENSGT00390000008063
Neognathae_c	ANCESTRAL SPECIES	38	ENSGT00530000063000.a.a.b	ENSGT00390000005605	ENSGT00940000159089	ENSGT00940000158178	ENSGT00980000198857	ENSGT00940000156719	ENSGT00940000163421	ENSGT00530000063679.B	ENSGT00940000155764.C	ENSGT00940000158445	ENSGT00940000160377	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000156051 #22
Kakapo	MODERN SPECIES	79	WDR83 (ENSSHBG00005013301)	WDR83OS (ENSSHBG00005013314)	MAN2B1 (ENSSHBG00005013324)	TRMT1 (ENSSHBG00005013351)	NACC1 (ENSSHBG00005013377)	ENSSHBG00005013387	CACNA1A (ENSSHBG00005013400)	ENSSHBG00005013417	YJU2B (ENSSHBG00005013431)	MRI1 (ENSSHBG00005013448)	ENSSHBG00005013463	NANOS3 (ENSSHBG00005013479)	ENSSHBG00005013487	SMARCA4 (ENSSHBG00005013643)	LDLR (ENSSHBG00005013811)	KHSRP (ENSSHBG00005013849) #22
Passeriformes	ANCESTRAL SPECIES	57														ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000011740	ENSGT00390000013732	ENSGT00530000063615.b	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a
Passeriformes_d	ANCESTRAL SPECIES	52														ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000011740	ENSGT00390000013732	ENSGT00530000063615.b	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a
Flycatcher	MODERN SPECIES	334																ENSFALG00000027665 #22	ENSFALG00000027506	ENSFALG00000024876
Passeriformes_g	ANCESTRAL SPECIES	68														ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000011740	ENSGT00390000013732	ENSGT00530000063615.b	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a
Passeroidea	ANCESTRAL SPECIES	71														ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000156051 #22	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000011740	ENSGT00390000013732	ENSGT00530000063615.b	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	24	ENSTGUG00000024069	ENSTGUG00000022661	ENSTGUG00000014278	ENSTGUG00000028732	ENSTGUG00000023715	KRI1 (ENSTGUG00000022088)	ENSTGUG00000026430	ENSTGUG00000020711	ENSTGUG00000025966	ENSTGUG00000018849	ENSTGUG00000019875	ENSTGUG00000021955	ENSTGUG00000027968	ENSTGUG00000022394	ENSTGUG00000015488	ENSTGUG00000028023 #22	ENSTGUG00000025772	PSPN (ENSTGUG00000023979)	ENSTGUG00000028983	ENSTGUG00000019294	ENSTGUG00000019803	ENSTGUG00000029364	ENSTGUG00000022427	ENSTGUG00000025800	ENSTGUG00000027108	ENSTGUG00000026664	ENSTGUG00000026105	MRI1 (ENSTGUG00000023850)	ENSTGUG00000020999	ENSTGUG00000022014	ENSTGUG00000019492
Zebra finch	MODERN SPECIES	24	ENSTGUG00000022011	ENSTGUG00000025472	ENSTGUG00000013676	ENSTGUG00000019226	ENSTGUG00000020307	ENSTGUG00000024185	ENSTGUG00000021141	ENSTGUG00000026037	ENSTGUG00000026690	ENSTGUG00000021000	ENSTGUG00000019450	ENSTGUG00000024690	ENSTGUG00000021256	ENSTGUG00000024510	ENSTGUG00000024375	ENSTGUG00000019440 #22	ENSTGUG00000023438	ENSTGUG00000021681	ENSTGUG00000027676	ENSTGUG00000021246	ENSTGUG00000025729	DCAF15 (ENSTGUG00000021982)	ENSTGUG00000021151	ENSTGUG00000021653	ENSTGUG00000028643	ENSTGUG00000022843	ENSTGUG00000028292	ENSTGUG00000023872	ENSTGUG00000019523	ENSTGUG00000019492	ENSTGUG00000022014
Cryptodira	ANCESTRAL SPECIES	45	ENSGT00940000158178	ENSGT00940000156719	ENSGT00940000163421	ENSGT00940000166551	ENSGT00530000063679.B	ENSGT00940000155764.C	ENSGT00940000158445	ENSGT00940000160377	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000161012	ENSGT00940000159313	ENSGT00940000164506	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00390000009016	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740
Chinese turtle	MODERN SPECIES	343																KHSRP (ENSPSIG00000008244) #22	ENSPSIG00000008162	GTF2F1 (ENSPSIG00000007557)	PSPN (ENSPSIG00000000151)	ALKBH7 (ENSPSIG00000007204)	CLPP (ENSPSIG00000006977)	ENSPSIG00000016734	RLN3 (ENSPSIG00000016585)	RFX1 (ENSPSIG00000016113)	DCAF15 (ENSPSIG00000015945)	ENSPSIG00000015794	CC2D1A (ENSPSIG00000014965)
Testudinoidea	ANCESTRAL SPECIES	38	ENSGT00940000156719	ENSGT00940000163421	ENSGT00940000166551	ENSGT00530000063679.B	ENSGT00940000155764.C	ENSGT00940000158445	ENSGT00940000160377	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000161012.b.b	ENSGT00940000161012.a	ENSGT00940000159313	ENSGT00940000164506	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00390000009016	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740
Emydidae	ANCESTRAL SPECIES	48	ENSGT00940000158178.f	ENSGT00940000156719	ENSGT00940000163421	ENSGT00940000166551	ENSGT00530000063679.B	ENSGT00940000155764.C	ENSGT00940000158445	ENSGT00940000160377	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000161012.b.a	ENSGT00940000159313	ENSGT00940000164506	ENSGT00940000156051 #22	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00390000009016	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00990000205655
Three-toed box turtle	MODERN SPECIES	382	SLC44A2 (ENSTMTG00000022351)	ILF3 (ENSTMTG00000022335)	ENSTMTG00000022328	DNM2 (ENSTMTG00000022315)	TMED1 (ENSTMTG00000022306)	CARM1 (ENSTMTG00000022282)	YIPF2 (ENSTMTG00000022276)	TIMM29 (ENSTMTG00000022274)	SMARCA4 (ENSTMTG00000022193)	LDLR (ENSTMTG00000022131)	ENSTMTG00000022117	ENSTMTG00000022110	ENSTMTG00000022102	DOCK6 (ENSTMTG00000021579)	ENSTMTG00000021479	KHSRP (ENSTMTG00000021461) #22	ENSTMTG00000021440	GTF2F1 (ENSTMTG00000021428)	PSPN (ENSTMTG00000021420)	ALKBH7 (ENSTMTG00000021414)	ENSTMTG00000021407	ENSTMTG00000021405	ENSTMTG00000021394	RLN3 (ENSTMTG00000021380)	RFX1 (ENSTMTG00000021207)	DCAF15 (ENSTMTG00000021152)	CC2D1A (ENSTMTG00000020919)	NANOS3 (ENSTMTG00000020886)	ENSTMTG00000020875	MRI1 (ENSTMTG00000020868)	YJU2B (ENSTMTG00000020864)
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	762								ADGRL2 (ENSCPBG00000016931) #14	ENSCPBG00000016933	ADGRL4 (ENSCPBG00000016946) #15	ENSCPBG00000016955	ENSCPBG00000016962	PTGFR (ENSCPBG00000016966) #18	GIPC2 (ENSCPBG00000016970) #19	DNAJB4 (ENSCPBG00000016974) #21	ENSCPBG00000016987 #22	NEXN (ENSCPBG00000016995) #23	MIGA1 (ENSCPBG00000016999) #24	USP33 (ENSCPBG00000017002) #25	ZZZ3 (ENSCPBG00000017003) #26	AK5 (ENSCPBG00000017010) #27	PIGK (ENSCPBG00000017015) #28	ST6GALNAC5 (ENSCPBG00000017020) #29	ST6GALNAC3 (ENSCPBG00000017022) #30	MSH4 (ENSCPBG00000017026) #33	RABGGTB (ENSCPBG00000017028) #34	ACADM (ENSCPBG00000017035) #35	SLC44A5 (ENSCPBG00000017042) #36	LHX8 (ENSCPBG00000017046) #37	TYW3 (ENSCPBG00000017047)	CRYZ (ENSCPBG00000017049)
painted turtle	MODERN SPECIES	992	ILF3 (ENSCPBG00000010274)	ENSCPBG00000010243	ENSCPBG00000010237	QTRT1 (ENSCPBG00000010229)	DNM2 (ENSCPBG00000010209)	TMED1 (ENSCPBG00000010202)	CARM1 (ENSCPBG00000010065)	YIPF2 (ENSCPBG00000010008)	ENSCPBG00000010005	SMARCA4 (ENSCPBG00000009994)	LDLR (ENSCPBG00000009990)	ENSCPBG00000009985	DOCK6 (ENSCPBG00000005854)	ENSCPBG00000005315	TSPAN16 (ENSCPBG00000005310)	KHSRP (ENSCPBG00000005286) #22	ENSCPBG00000005277	GTF2F1 (ENSCPBG00000005268)	PSPN (ENSCPBG00000005261)	ALKBH7 (ENSCPBG00000005256)	CLPP (ENSCPBG00000005251)	ENSCPBG00000005246	ENSCPBG00000005230	ATG4D (ENSCPBG00000005212)	ENSCPBG00000005190	CDKN2D (ENSCPBG00000005185)	AP1M2 (ENSCPBG00000005150)	ENSCPBG00000005025	SPC24 (ENSCPBG00000004995)	KEAP1 (ENSCPBG00000004989)	S1PR5 (ENSCPBG00000004985)
Testudinidae	ANCESTRAL SPECIES	41	ENSGT00940000153229.B.f #9	ENSGT00530000063936.b #10	ENSGT01030000235381.a	ENSGT01040000241459	ENSGT00940000163111.a.b.b	ENSGT00940000159078 #12	ENSGT00940000166568	ENSGT00940000156348.C #14	ENSGT01030000235287	ENSGT00940000158252 #15	ENSGT00530000064273.a.a	ENSGT00940000163581.a	ENSGT01030000234559.a.b #18	ENSGT00390000003420.a.b #19	ENSGT00940000156826 #21	ENSGT00940000156051 #22	ENSGT00730000111176.j #23	ENSGT00390000008565.b #24	ENSGT00940000157311 #25	ENSGT00390000005307 #26	ENSGT00960000191290	ENSGT00940000155917 #27	ENSGT00940000156273 #28	ENSGT00940000157634 #29	ENSGT00940000159735 #30	ENSGT00550000074897 #33	ENSGT00950000183128.B #34	ENSGT00940000158429 #35	ENSGT00940000156600 #36	ENSGT00940000156200.A #37	ENSGT00940000153304.C
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005011038	ENSGEVG00005011057 #9	SAMD13 (ENSGEVG00005011088) #10	ENSGEVG00005011138	ENSGEVG00005011189	TTLL7 (ENSGEVG00005011254) #12	ENSGEVG00005011361	ADGRL2 (ENSGEVG00005011909) #14	ENSGEVG00005014497	ADGRL4 (ENSGEVG00005014535) #15	ENSGEVG00005014689	ENSGEVG00005014949	PTGFR (ENSGEVG00005014980) #18	ENSGEVG00005015023 #19	DNAJB4 (ENSGEVG00005015043) #21	ENSGEVG00005015086 #22	NEXN (ENSGEVG00005015169) #23	MIGA1 (ENSGEVG00005015286) #24	USP33 (ENSGEVG00005015387) #25	ZZZ3 (ENSGEVG00005015485) #26	ENSGEVG00005015525	AK5 (ENSGEVG00005015557) #27	PIGK (ENSGEVG00005015605) #28	ST6GALNAC5 (ENSGEVG00005015628) #29	ST6GALNAC3 (ENSGEVG00005015639) #30	MSH4 (ENSGEVG00005015670) #33	ENSGEVG00005016009 #34	ENSGEVG00005004033 #34	ACADM (ENSGEVG00005004108) #35	SLC44A5 (ENSGEVG00005004282) #36	TYW3 (ENSGEVG00005004607)
Goode s thornscrub tortoise	MODERN SPECIES	152	SLC44A2 (ENSGEVG00005012442)	ILF3 (ENSGEVG00005012517)	ENSGEVG00005012568	QTRT1 (ENSGEVG00005012604)	DNM2 (ENSGEVG00005012668)	TMED1 (ENSGEVG00005012804)	ENSGEVG00005012855	CARM1 (ENSGEVG00005012888)	YIPF2 (ENSGEVG00005012953)	TIMM29 (ENSGEVG00005012977)	SMARCA4 (ENSGEVG00005013014)	LDLR (ENSGEVG00005013119)	KANK2 (ENSGEVG00005013171)	DOCK6 (ENSGEVG00005013294)	ENSGEVG00005014207	KHSRP (ENSGEVG00005014355) #22	ENSGEVG00005014840	GTF2F1 (ENSGEVG00005014890)	PSPN (ENSGEVG00005015375)	ALKBH7 (ENSGEVG00005015413)	ENSGEVG00005015422	CLPP (ENSGEVG00005015438)	ENSGEVG00005015467	ENSGEVG00005015561	RLN3 (ENSGEVG00005015644)	RFX1 (ENSGEVG00005015668)	DCAF15 (ENSGEVG00005015747)	ENSGEVG00005015785	PODNL1 (ENSGEVG00005015827)	ENSGEVG00005015952	CC2D1A (ENSGEVG00005015986)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2215														ENSCABG00000006712 #19	DNAJB4 (ENSCABG00000006708) #21	ENSCABG00000006701 #22	NEXN (ENSCABG00000006113) #23	MIGA1 (ENSCABG00000006086) #24	USP33 (ENSCABG00000006082) #25	ZZZ3 (ENSCABG00000006041) #26	ENSCABG00000006035	AK5 (ENSCABG00000006033) #27	PIGK (ENSCABG00000006031) #28	ST6GALNAC5 (ENSCABG00000006027) #29
Abingdon island giant tortoise	MODERN SPECIES	727	QTRT1 (ENSCABG00000004363)	DNM2 (ENSCABG00000004356)	TMED1 (ENSCABG00000004354)	CARM1 (ENSCABG00000004353)	YIPF2 (ENSCABG00000004351)	TIMM29 (ENSCABG00000004350)	SMARCA4 (ENSCABG00000004334)	LDLR (ENSCABG00000004317)	ENSCABG00000004312	ENSCABG00000004311	ENSCABG00000004309	ENSCABG00000004307	ENSCABG00000004305	ENSCABG00000004298	ENSCABG00000004297	KHSRP (ENSCABG00000004282) #22	ENSCABG00000004276	GTF2F1 (ENSCABG00000004243)	PSPN (ENSCABG00000004239)	ALKBH7 (ENSCABG00000004236)	CLPP (ENSCABG00000004220)	ENSCABG00000004216	ENSCABG00000004209	RLN3 (ENSCABG00000004208)	RFX1 (ENSCABG00000004196)	DCAF15 (ENSCABG00000004186)	ENSCABG00000004181	PODNL1 (ENSCABG00000004175)	CC2D1A (ENSCABG00000004166)	NANOS3 (ENSCABG00000004162)	ZSWIM4 (ENSCABG00000004152)
Anura	ANCESTRAL SPECIES	17	ENSGT01100000263525.a.b.b	ENSGT00940000153231.B #7	ENSGT00390000002634.b #8	ENSGT00940000153229.B #9	ENSGT00530000063936.b #10	ENSGT00940000163111.a.b.b	ENSGT00940000159078 #12	ENSGT00940000156348.C #14	ENSGT01030000235287	ENSGT00940000158252.c #15	ENSGT00530000064273.a.a	ENSGT01030000234559.a.b #18	ENSGT00390000003420.a.b #19	ENSGT00940000156826 #21	ENSGT00940000159428	ENSGT00940000156051 #22	ENSGT00730000111176 #23	ENSGT00390000008565.b #24	ENSGT00940000157311 #25	ENSGT00390000005307 #26	ENSGT00940000155917 #27	ENSGT00940000156273 #28	ENSGT00940000157634 #29	ENSGT00940000159735 #30	ENSGT00550000074897 #33	ENSGT00950000183128.B #34	ENSGT00940000158429 #35	ENSGT00940000156600 #36	ENSGT00940000156200.A #37	ENSGT00940000153304.C	ENSGT00940000154882
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	11	DAB1 (ENSLLEG00000028471)	C8B (ENSLLEG00000028088)	C8A (ENSLLEG00000028025)	ENSLLEG00000027543	TTLL7 (ENSLLEG00000027335) #12	ADGRL2 (ENSLLEG00000023077) #14	ENSLLEG00000022916	ENSLLEG00000022861	ADGRL4 (ENSLLEG00000022738) #15	ENSLLEG00000022704	ENSLLEG00000022206	PTGFR (ENSLLEG00000022172) #18	ENSLLEG00000022156	GIPC2 (ENSLLEG00000022115) #19	DNAJB4 (ENSLLEG00000022046) #21	ENSLLEG00000020933 #22	NEXN (ENSLLEG00000019266) #23	MIGA1 (ENSLLEG00000019097) #24	USP33 (ENSLLEG00000018773) #25	ZZZ3 (ENSLLEG00000018432) #26	AK5 (ENSLLEG00000018222) #27	ENSLLEG00000018174	PIGK (ENSLLEG00000029426) #28	ENSLLEG00000029387	ST6GALNAC5 (ENSLLEG00000029357) #29	ENSLLEG00000029346 #7	ST6GALNAC3 (ENSLLEG00000029317) #30	MSH4 (ENSLLEG00000029274) #33	RABGGTB (ENSLLEG00000029213) #34	ACADM (ENSLLEG00000029026) #35	SLC44A5 (ENSLLEG00000028564) #36
Leishan spiny toad	MODERN SPECIES	6	IER2 (ENSLLEG00000013715)	YJU2B (ENSLLEG00000013539)	ENSLLEG00000013312	ENSLLEG00000013269	CACNA1A (ENSLLEG00000013048)	ENSLLEG00000012941	ENSLLEG00000012514	ENSLLEG00000012469	ENSLLEG00000012200	ENSLLEG00000011916	SLC25A23 (ENSLLEG00000011578)	ENSLLEG00000011499	ENSLLEG00000011461	DENND1C (ENSLLEG00000011348)	ENSLLEG00000011260	KHSRP (ENSLLEG00000011156) #22	MRI1 (ENSLLEG00000011067)	ENSLLEG00000011033	ENSLLEG00000010795	NANOS3 (ENSLLEG00000010759)	ENSLLEG00000010735	ENSLLEG00000010700	ACHE (ENSLLEG00000010628)	ENSLLEG00000010606	C17orf49 (ENSLLEG00000010539)	RNASEK (ENSLLEG00000010493)	ENSLLEG00000010319	ARRB2 (ENSLLEG00000009872)	ENSLLEG00000009084	ENSLLEG00000008993	ENSLLEG00000008758
Frog	DUPLICATION
Frog	MODERN SPECIES	4	uox (ENSXETG00000008648) #9	ENSXETG00000043636	samd13 (ENSXETG00000025078) #10	prkacb (ENSXETG00000008649)	ttll7 (ENSXETG00000008651) #12	ENSXETG00000039535	adgrl2 (ENSXETG00000031189) #14	ENSXETG00000039769	ENSXETG00000043288	adgrl4 (ENSXETG00000039849) #15	ENSXETG00000045528	ptgfr (ENSXETG00000030932) #18	ENSXETG00000041803	gipc2 (ENSXETG00000013148) #19	dnajb4 (ENSXETG00000013144) #21	fubp1 (ENSXETG00000013137) #22	nexn (ENSXETG00000031698) #23	miga1 (ENSXETG00000013134) #24	usp33 (ENSXETG00000013118) #25	zzz3 (ENSXETG00000031959) #26	ak5 (ENSXETG00000033226) #27	pigk (ENSXETG00000002970) #28	st6galnac5 (ENSXETG00000002971) #29	ENSXETG00000048280	st6galnac3 (ENSXETG00000002975) #30	rabggtb (ENSXETG00000002979) #33	acadm (ENSXETG00000002983) #35	slc44a5 (ENSXETG00000002987) #36	lhx8 (ENSXETG00000002992) #37	tyw3 (ENSXETG00000002996)	cryz (ENSXETG00000002997)
Frog	MODERN SPECIES	3	ddx27 (ENSXETG00000017231)	ENSXETG00000031312	TNFSF14 (ENSXETG00000047773)	ENSXETG00000032992	ENSXETG00000037171	ENSXETG00000034841	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	c3 (ENSXETG00000017270)	ENSXETG00000045964	c3p1 (ENSXETG00000048045)	ENSXETG00000042646	tubb4a (ENSXETG00000021860)	dennd1c (ENSXETG00000024511)	crb3 (ENSXETG00000024510)	slc25a23 (ENSXETG00000024509)	khsrp (ENSXETG00000021862) #22	mri1 (ENSXETG00000021867)	c19orf53 (ENSXETG00000038713)	zswim4 (ENSXETG00000021870)	NANOS3 (ENSXETG00000021874)	cc2d1a (ENSXETG00000005556)	ENSXETG00000037742	dcaf15 (ENSXETG00000005570)	rfx1 (ENSXETG00000005567)	rln3 (ENSXETG00000033085)	ENSXETG00000035478	palm3 (ENSXETG00000005574)	misp3 (ENSXETG00000038750)	clpp (ENSXETG00000005576)	ENSXETG00000032234	alkbh7 (ENSXETG00000005578)