Percomorphaceae	ANCESTRAL SPECIES		ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pomacentridae	ANCESTRAL SPECIES	35	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553.f #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553.f #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553.f #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Orange clownfish	MODERN SPECIES	21	THEMIS2 (ENSAPEG00000006354)	rpa2 (ENSAPEG00000006317) #7	smpdl3b (ENSAPEG00000006295) #8	mecr (ENSAPEG00000006248) #9	LIN28A (ENSAPEG00000006197) #10	MANEAL (ENSAPEG00000006178) #11	yrdc (ENSAPEG00000006164) #12	mtf1 (ENSAPEG00000006125) #13	INPP5B (ENSAPEG00000006094) #14	ENSAPEG00000006078 #15	ZC3H12A (ENSAPEG00000006072) #17	GRIK3 (ENSAPEG00000006019) #18	csf3r (ENSAPEG00000005997) #19	mrps15 (ENSAPEG00000005965) #20	ENSAPEG00000005981 #21	OSCP1 (ENSAPEG00000005918) #22	STK40 (ENSAPEG00000005892) #23	eva1ba (ENSAPEG00000005773) #24	sh3d21 (ENSAPEG00000005738) #25	THRAP3 (ENSAPEG00000005696) #26	MAP7D1 (ENSAPEG00000005614) #27	MAP3K6 (ENSAPEG00000005570) #28	SNIP1 (ENSAPEG00000005542) #29	dnali1 (ENSAPEG00000005453) #30	gnl2 (ENSAPEG00000005375) #31	rspo1 (ENSAPEG00000005307) #32	FHL3 (ENSAPEG00000005272) #33	utp11 (ENSAPEG00000005214) #34	pou3f1 (ENSAPEG00000005174) #35	rragca (ENSAPEG00000005106) #36	MYCBP (ENSAPEG00000005073) #37
Clown anemonefish	MODERN SPECIES	1296							mtf1 (ENSAOCG00000015058) #13	INPP5B (ENSAOCG00000014998) #14	ENSAOCG00000014980	ENSAOCG00000001847 #16	ZC3H12A (ENSAOCG00000014937) #17	GRIK3 (ENSAOCG00000002707) #18	csf3r (ENSAOCG00000014880) #19	mrps15 (ENSAOCG00000014871) #20	ENSAOCG00000001009 #21	OSCP1 (ENSAOCG00000001002) #22	STK40 (ENSAOCG00000000999) #23	eva1ba (ENSAOCG00000014770) #24	sh3d21 (ENSAOCG00000000988) #25	THRAP3 (ENSAOCG00000014738) #26	MAP7D1 (ENSAOCG00000014698) #27	MAP3K6 (ENSAOCG00000014625) #28	SNIP1 (ENSAOCG00000014455) #29	dnali1 (ENSAOCG00000014444) #30	gnl2 (ENSAOCG00000014396) #31	rspo1 (ENSAOCG00000014341) #32	FHL3 (ENSAOCG00000014316) #33
Spiny chromis	MODERN SPECIES		THEMIS2 (ENSAPOG00000000959)	rpa2 (ENSAPOG00000024130) #7	smpdl3b (ENSAPOG00000024163) #8	mecr (ENSAPOG00000024202) #9	LIN28A (ENSAPOG00000024256) #10	MANEAL (ENSAPOG00000024286) #11	yrdc (ENSAPOG00000024293) #12	mtf1 (ENSAPOG00000024298) #13	INPP5B (ENSAPOG00000024312) #14	ENSAPOG00000024319 #15	ZC3H12A (ENSAPOG00000024328) #17	GRIK3 (ENSAPOG00000024373) #18	csf3r (ENSAPOG00000024384) #19	mrps15 (ENSAPOG00000024393) #20	ENSAPOG00000024397	OSCP1 (ENSAPOG00000024408) #22	STK40 (ENSAPOG00000024423) #23	eva1ba (ENSAPOG00000024432) #24	sh3d21 (ENSAPOG00000024442) #25	THRAP3 (ENSAPOG00000024453) #26	MAP7D1 (ENSAPOG00000024474) #27	MAP3K6 (ENSAPOG00000024486) #28	SNIP1 (ENSAPOG00000024490) #29	dnali1 (ENSAPOG00000024495) #30	gnl2 (ENSAPOG00000024507) #31	rspo1 (ENSAPOG00000024512) #32	FHL3 (ENSAPOG00000024520) #33	utp11 (ENSAPOG00000024525) #34	pou3f1 (ENSAPOG00000024530) #35	rragca (ENSAPOG00000024532) #36	MYCBP (ENSAPOG00000024534) #37
Bicolor damselfish	MODERN SPECIES	964												GRIK3 (ENSSPAG00000020311) #18	CSF3R (ENSSPAG00000020340) #19	mrps15 (ENSSPAG00000020369) #20	ENSSPAG00000020390	OSCP1 (ENSSPAG00000020406) #22	STK40 (ENSSPAG00000020429) #23
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000178211	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000178211	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000166920	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000166920	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000166920	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Zebra mbuna	MODERN SPECIES	1093	rpa2 (ENSMZEG00005006788) #7	smpdl3b (ENSMZEG00005006809) #8	mecr (ENSMZEG00005006826) #9	LIN28A (ENSMZEG00005006914) #10	MANEAL (ENSMZEG00005006934) #11	yrdc (ENSMZEG00005006948) #12	mtf1 (ENSMZEG00005006956) #13	INPP5B (ENSMZEG00005006964) #14	ENSMZEG00005006982	ENSMZEG00005006991 #15	ZC3H12A (ENSMZEG00005006997) #17	GRIK3 (ENSMZEG00005007006) #18	csf3r (ENSMZEG00005007036) #19	mrps15 (ENSMZEG00005007070) #20	ENSMZEG00005007095 #21	OSCP1 (ENSMZEG00005007120) #22	STK40 (ENSMZEG00005007149) #23	eva1ba (ENSMZEG00005007187) #24	sh3d21 (ENSMZEG00005007196) #25	THRAP3 (ENSMZEG00005007212) #26	MAP7D1 (ENSMZEG00005007251) #27	ENSMZEG00005007342 #28	SNIP1 (ENSMZEG00005007365) #29	dnali1 (ENSMZEG00005007377) #30	gnl2 (ENSMZEG00005007393) #31	cox5aa (ENSMZEG00005007429)	ENSMZEG00005007454	irgq2 (ENSMZEG00005007489)	ENSMZEG00005007501	ENSMZEG00005007520	ethe1 (ENSMZEG00005007535)
Eastern happy	MODERN SPECIES	2	THEMIS2 (ENSACLG00000027754)	rpa2 (ENSACLG00000027761) #7	smpdl3b (ENSACLG00000027765) #8	mecr (ENSACLG00000027767) #9	LIN28A (ENSACLG00000027769) #10	MANEAL (ENSACLG00000027772) #11	yrdc (ENSACLG00000027775) #12	mtf1 (ENSACLG00000027779) #13	INPP5B (ENSACLG00000027782) #14	ENSACLG00000027799 #15	ZC3H12A (ENSACLG00000027801) #17	GRIK3 (ENSACLG00000027806) #18	csf3r (ENSACLG00000027809) #19	mrps15 (ENSACLG00000027820) #20	ENSACLG00000027824 #21	OSCP1 (ENSACLG00000027829) #22	STK40 (ENSACLG00000027839) #23	eva1ba (ENSACLG00000027847) #24	sh3d21 (ENSACLG00000027848) #25	THRAP3 (ENSACLG00000027851) #26	ENSACLG00000027855	MAP7D1 (ENSACLG00000000048) #27	ENSACLG00000000084 #28	SNIP1 (ENSACLG00000000108) #29	ENSACLG00000000115	dnali1 (ENSACLG00000000265) #30	rspo1 (ENSACLG00000000298) #32	FHL3 (ENSACLG00000000312) #33	utp11 (ENSACLG00000000339) #34	pou3f1 (ENSACLG00000000389) #35	rragca (ENSACLG00000000534) #36
P. nyererei	MODERN SPECIES	362	THEMIS2 (ENSPNYG00000014138)	rpa2 (ENSPNYG00000014117) #7	smpdl3b (ENSPNYG00000014090) #8	mecr (ENSPNYG00000014066) #9	LIN28A (ENSPNYG00000014005) #10	MANEAL (ENSPNYG00000013969) #11	yrdc (ENSPNYG00000013956) #12	mtf1 (ENSPNYG00000013739) #13	INPP5B (ENSPNYG00000013593) #14	ENSPNYG00000013556	ZC3H12A (ENSPNYG00000013534) #17	GRIK3 (ENSPNYG00000013498) #18	csf3r (ENSPNYG00000013467) #19	mrps15 (ENSPNYG00000013431) #20	ENSPNYG00000013414 #21	ENSPNYG00000013399 #22	STK40 (ENSPNYG00000013365) #23	eva1ba (ENSPNYG00000013357) #24	sh3d21 (ENSPNYG00000013339) #25	THRAP3 (ENSPNYG00000013314) #26	MAP7D1 (ENSPNYG00000013285) #27	ENSPNYG00000013247 #28	SNIP1 (ENSPNYG00000013230) #29	dnali1 (ENSPNYG00000013211) #30	ENSPNYG00000013195	rspo1 (ENSPNYG00000013177) #32	FHL3 (ENSPNYG00000013162) #33	utp11 (ENSPNYG00000013140) #34	pou3f1 (ENSPNYG00000013130) #35	rragca (ENSPNYG00000013099) #36	MYCBP (ENSPNYG00000013028) #37
Burton s mouthbrooder	MODERN SPECIES	340	ppp1r8b (ENSHBUG00000009124)	THEMIS2 (ENSHBUG00000009185)	rpa2 (ENSHBUG00000009205) #7	mecr (ENSHBUG00000009249) #9	smpdl3b (ENSHBUG00000009222) #8	LIN28A (ENSHBUG00000009265) #10	MANEAL (ENSHBUG00000009290) #11	yrdc (ENSHBUG00000009298) #12	mtf1 (ENSHBUG00000009314) #13	INPP5B (ENSHBUG00000009350) #14	ZC3H12A (ENSHBUG00000009356) #17	GRIK3 (ENSHBUG00000009396) #18	csf3r (ENSHBUG00000009429) #19	mrps15 (ENSHBUG00000009456) #20	ENSHBUG00000009469 #21	OSCP1 (ENSHBUG00000009513) #22	STK40 (ENSHBUG00000009547) #23	eva1ba (ENSHBUG00000009558) #24	sh3d21 (ENSHBUG00000009579) #25	THRAP3 (ENSHBUG00000009602) #26	MAP7D1 (ENSHBUG00000009652) #27	ENSHBUG00000009741 #28	SNIP1 (ENSHBUG00000009756) #29	dnali1 (ENSHBUG00000009777) #30	ENSHBUG00000000835	rspo1 (ENSHBUG00000009811) #32	FHL3 (ENSHBUG00000009864) #33	utp11 (ENSHBUG00000009895) #34	pou3f1 (ENSHBUG00000009911) #35	rragca (ENSHBUG00000009931) #36	MYCBP (ENSHBUG00000009957) #37
Lyretail cichlid	MODERN SPECIES	311	smpdl3b (ENSNBRG00000009357) #8	mecr (ENSNBRG00000009406) #9	LIN28A (ENSNBRG00000009446) #10	MANEAL (ENSNBRG00000009462) #11	yrdc (ENSNBRG00000009475) #12	mtf1 (ENSNBRG00000009532) #13	ENSNBRG00000009559 #14	ENSNBRG00000009571 #14	ENSNBRG00000009581	ZC3H12A (ENSNBRG00000009607) #17	GRIK3 (ENSNBRG00000009631) #18	ENSNBRG00000009681	csf3r (ENSNBRG00000009712) #19	mrps15 (ENSNBRG00000009851) #20	ENSNBRG00000009860 #21	OSCP1 (ENSNBRG00000009883) #22	STK40 (ENSNBRG00000009915) #23	eva1ba (ENSNBRG00000009946) #24	sh3d21 (ENSNBRG00000009956) #25	THRAP3 (ENSNBRG00000009991) #26	MAP7D1 (ENSNBRG00000010005) #27	ENSNBRG00000010049 #28	SNIP1 (ENSNBRG00000010257) #29	dnali1 (ENSNBRG00000010268) #30	gnl2 (ENSNBRG00000010291) #31	rspo1 (ENSNBRG00000010347) #32	FHL3 (ENSNBRG00000010416) #33	utp11 (ENSNBRG00000010435) #34	pou3f1 (ENSNBRG00000010456) #35	rragca (ENSNBRG00000010467) #36	MYCBP (ENSNBRG00000010493) #37
Nile tilapia	MODERN SPECIES	2	rpa2 (ENSONIG00000016196) #7	smpdl3b (ENSONIG00000016198) #8	mecr (ENSONIG00000016200) #9	LIN28A (ENSONIG00000016204) #10	MANEAL (ENSONIG00000030626) #11	yrdc (ENSONIG00000016213) #12	mtf1 (ENSONIG00000016218) #13	INPP5B (ENSONIG00000016229) #14	ENSONIG00000030694	ENSONIG00000037129 #15	ZC3H12A (ENSONIG00000016235) #17	GRIK3 (ENSONIG00000016238) #18	csf3r (ENSONIG00000016254) #19	mrps15 (ENSONIG00000016261) #20	ENSONIG00000043059 #21	OSCP1 (ENSONIG00000016265) #22	STK40 (ENSONIG00000037285) #23	eva1b (ENSONIG00000042590) #24	sh3d21 (ENSONIG00000016273) #25	THRAP3 (ENSONIG00000016278) #26	MAP7D1 (ENSONIG00000016283) #27	ENSONIG00000016285 #28	ENSONIG00000041284	SNIP1 (ENSONIG00000016290) #29	dnali1 (ENSONIG00000016300) #30	ENSONIG00000016291	rspo1 (ENSONIG00000016302) #32	fhl3 (ENSONIG00000013661) #33	utp11 (ENSONIG00000033069) #34	pou3f1 (ENSONIG00000021113) #35	rragc (ENSONIG00000032190) #36
Midas cichlid	MODERN SPECIES	668	THEMIS2 (ENSACIG00000017207)	rpa2 (ENSACIG00000017220) #7	smpdl3b (ENSACIG00000017232) #8	mecr (ENSACIG00000017257) #9	LIN28A (ENSACIG00000017279) #10	ENSACIG00000017313 #11	MANEAL (ENSACIG00000017324) #11	yrdc (ENSACIG00000017330) #12	mtf1 (ENSACIG00000017387) #13	INPP5B (ENSACIG00000017714) #14	ZC3H12A (ENSACIG00000017750) #17	GRIK3 (ENSACIG00000017772) #18	csf3r (ENSACIG00000017809) #19	mrps15 (ENSACIG00000017933) #20	ENSACIG00000017948 #21	OSCP1 (ENSACIG00000018007) #22	STK40 (ENSACIG00000018038) #23	eva1ba (ENSACIG00000018069) #24	sh3d21 (ENSACIG00000018083) #25	ENSACIG00000018107	THRAP3 (ENSACIG00000018110) #26	MAP7D1 (ENSACIG00000018142) #27	ENSACIG00000018194 #28	SNIP1 (ENSACIG00000018325) #29	dnali1 (ENSACIG00000018337) #30	gnl2 (ENSACIG00000018346) #31	rspo1 (ENSACIG00000018378) #32	FHL3 (ENSACIG00000018508) #33	utp11 (ENSACIG00000018523) #34	pou3f1 (ENSACIG00000018538) #35	rragca (ENSACIG00000018548) #36
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
NAME_4	ANCESTRAL SPECIES	55	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000171773	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Mummichog	MODERN SPECIES	2410	THEMIS2 (ENSFHEG00000001053)	rpa2 (ENSFHEG00000001049) #7	smpdl3b (ENSFHEG00000001043) #8	mecr (ENSFHEG00000001041) #9	LIN28A (ENSFHEG00000001038) #10	ENSFHEG00000001035 #11	MANEAL (ENSFHEG00000001033) #11	yrdc (ENSFHEG00000001029) #12	mtf1 (ENSFHEG00000001026) #13	INPP5B (ENSFHEG00000001022) #14	ZC3H12A (ENSFHEG00000001019) #17	GRIK3 (ENSFHEG00000001018) #18	csf3r (ENSFHEG00000001015) #19	mrps15 (ENSFHEG00000001013) #20	ENSFHEG00000001010	OSCP1 (ENSFHEG00000001008) #22	STK40 (ENSFHEG00000001002) #23	eva1ba (ENSFHEG00000001000) #24	sh3d21 (ENSFHEG00000000996) #25	THRAP3 (ENSFHEG00000000989) #26	MAP7D1 (ENSFHEG00000000983) #27
Sheepshead minnow	MODERN SPECIES	118	THEMIS2 (ENSCVAG00000017238)	rpa2 (ENSCVAG00000017246) #7	smpdl3b (ENSCVAG00000017259) #8	mecr (ENSCVAG00000017299) #9	LIN28A (ENSCVAG00000017320) #10	MANEAL (ENSCVAG00000017347) #11	yrdc (ENSCVAG00000017355) #12	mtf1 (ENSCVAG00000017389) #13	INPP5B (ENSCVAG00000017401) #14	ENSCVAG00000017412 #15	ZC3H12A (ENSCVAG00000017420) #17	GRIK3 (ENSCVAG00000017478) #18	csf3r (ENSCVAG00000017491) #19	mrps15 (ENSCVAG00000017500) #20	ENSCVAG00000017521	OSCP1 (ENSCVAG00000017554) #22	STK40 (ENSCVAG00000017594) #23	eva1ba (ENSCVAG00000017604) #24	sh3d21 (ENSCVAG00000017624) #25	THRAP3 (ENSCVAG00000017634) #26	MAP7D1 (ENSCVAG00000017671) #27	MAP3K6 (ENSCVAG00000017684) #28	snip1 (ENSCVAG00000017689)	dnali1 (ENSCVAG00000017701) #30	gnl2 (ENSCVAG00000017712) #31	rspo1 (ENSCVAG00000000459) #32	FHL3 (ENSCVAG00000017747) #33	utp11 (ENSCVAG00000000900) #34	pou3f1 (ENSCVAG00000017958) #35	rragca (ENSCVAG00000017979) #36	ENSCVAG00000018007 #37
Poeciliinae	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Poecilia	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
NAME_6	ANCESTRAL SPECIES	152	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000171773	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31
Amazon molly	MODERN SPECIES	337	smpdl3b (ENSPFOG00000014131) #8	mecr (ENSPFOG00000014069) #9	LIN28A (ENSPFOG00000014054) #10	MANEAL (ENSPFOG00000014039) #11	yrdc (ENSPFOG00000023097) #12	mtf1 (ENSPFOG00000013962) #13	INPP5B (ENSPFOG00000013954) #14	ENSPFOG00000022057	ENSPFOG00000013949 #15	ZC3H12A (ENSPFOG00000013935) #17	GRIK3 (ENSPFOG00000013674) #18	ENSPFOG00000022696	csf3r (ENSPFOG00000013594) #19	mrps15 (ENSPFOG00000013553) #20	ENSPFOG00000013535	OSCP1 (ENSPFOG00000013493) #22	STK40 (ENSPFOG00000013431) #23	eva1ba (ENSPFOG00000013421) #24	sh3d21 (ENSPFOG00000013375) #25	THRAP3 (ENSPFOG00000013297) #26	MAP7D1 (ENSPFOG00000013255) #27	MAP3K6 (ENSPFOG00000013047) #28	SNIP1 (ENSPFOG00000013016) #29	dnali1 (ENSPFOG00000012981) #30	gnl2 (ENSPFOG00000012893) #31
Sailfin molly	MODERN SPECIES	307	ppp1r8b (ENSPLAG00000020714)	THEMIS2 (ENSPLAG00000020739)	rpa2 (ENSPLAG00000020750) #7	smpdl3b (ENSPLAG00000020801) #8	mecr (ENSPLAG00000020829) #9	LIN28A (ENSPLAG00000020857) #10	MANEAL (ENSPLAG00000020875) #11	yrdc (ENSPLAG00000020882) #12	mtf1 (ENSPLAG00000020935) #13	INPP5B (ENSPLAG00000020956) #14	ZC3H12A (ENSPLAG00000020965) #17	GRIK3 (ENSPLAG00000021016) #18	csf3r (ENSPLAG00000021030) #19	mrps15 (ENSPLAG00000000454) #20	ENSPLAG00000021045	OSCP1 (ENSPLAG00000021099) #22
Guppy	MODERN SPECIES	446	THEMIS2 (ENSPREG00000005131)	rpa2 (ENSPREG00000005162) #7	smpdl3b (ENSPREG00000005191) #8	mecr (ENSPREG00000005228) #9	LIN28A (ENSPREG00000005259) #10	MANEAL (ENSPREG00000005276) #11	yrdc (ENSPREG00000005285) #12	mtf1 (ENSPREG00000005331) #13	INPP5B (ENSPREG00000005365) #14	ENSPREG00000005442 #15	ZC3H12A (ENSPREG00000005453) #17	GRIK3 (ENSPREG00000005481) #18	csf3r (ENSPREG00000005562) #19	mrps15 (ENSPREG00000005592) #20	ENSPREG00000005621 #21	OSCP1 (ENSPREG00000005686) #22	STK40 (ENSPREG00000005733) #23	eva1ba (ENSPREG00000005771) #24	sh3d21 (ENSPREG00000005794) #25	THRAP3 (ENSPREG00000005816) #26	MAP7D1 (ENSPREG00000005854) #27	MAP3K6 (ENSPREG00000005903) #28	snip1 (ENSPREG00000005952)	dnali1 (ENSPREG00000005961) #30	gnl2 (ENSPREG00000005988) #31	rspo1 (ENSPREG00000006040) #32	FHL3 (ENSPREG00000006051) #33	utp11 (ENSPREG00000006068) #34	pou3f1 (ENSPREG00000006101) #35	rragca (ENSPREG00000006113) #36	ENSPREG00000006142 #37
Platyfish	MODERN SPECIES	17	THEMIS2 (ENSXMAG00000014548)	rpa2 (ENSXMAG00000014552) #7	smpdl3b (ENSXMAG00000026250) #8	mecr (ENSXMAG00000026077) #9	LIN28A (ENSXMAG00000014593) #10	MANEAL (ENSXMAG00000014596) #11	yrdc (ENSXMAG00000014606) #12	mtf1 (ENSXMAG00000014614) #13	INPP5B (ENSXMAG00000014629) #14	ENSXMAG00000021281 #15	ZC3H12A (ENSXMAG00000014646) #17	GRIK3 (ENSXMAG00000014647) #18	csf3r (ENSXMAG00000014732) #19	mrps15 (ENSXMAG00000028874) #20	ENSXMAG00000024500 #21	OSCP1 (ENSXMAG00000014752) #22	STK40 (ENSXMAG00000029028) #23	eva1ba (ENSXMAG00000001589) #24	sh3d21 (ENSXMAG00000001593) #25	THRAP3 (ENSXMAG00000014797) #26	MAP7D1 (ENSXMAG00000014815) #27	ENSXMAG00000014853 #28	SNIP1 (ENSXMAG00000014885) #29	dnali1 (ENSXMAG00000014886) #30	gnl2 (ENSXMAG00000014898) #31	rspo1 (ENSXMAG00000028817) #32	FHL3 (ENSXMAG00000029691) #33	utp11 (ENSXMAG00000013219) #34	pou3f1 (ENSXMAG00000019529) #35	rragca (ENSXMAG00000026290) #36	ENSXMAG00000013229 #37
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Mangrove rivulus	MODERN SPECIES	33	THEMIS2 (ENSKMAG00000013198)	rpa2 (ENSKMAG00000013233) #7	smpdl3b (ENSKMAG00000013382) #8	mecr (ENSKMAG00000013401) #9	LIN28A (ENSKMAG00000013435) #10	MANEAL (ENSKMAG00000013448) #11	yrdc (ENSKMAG00000013468) #12	mtf1 (ENSKMAG00000013485) #13	INPP5B (ENSKMAG00000013537) #14	ENSKMAG00000013581 #15	ZC3H12A (ENSKMAG00000013650) #17	GRIK3 (ENSKMAG00000013708) #18	csf3r (ENSKMAG00000013774) #19	mrps15 (ENSKMAG00000013807) #20	ENSKMAG00000013832 #21	OSCP1 (ENSKMAG00000013842) #22	STK40 (ENSKMAG00000013895) #23	eva1ba (ENSKMAG00000013927) #24	sh3d21 (ENSKMAG00000013951) #25
Oryzias	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Indian medaka	MODERN SPECIES	5	ENSOMEG00000018385	rpa2 (ENSOMEG00000018424) #7	smpdl3b (ENSOMEG00000018441) #8	mecr (ENSOMEG00000018484) #9	ENSOMEG00000018521 #10	MANEAL (ENSOMEG00000000478) #11	yrdc (ENSOMEG00000018550) #12	mtf1 (ENSOMEG00000018579) #13	INPP5B (ENSOMEG00000018665) #14	ENSOMEG00000018697 #15	ZC3H12A (ENSOMEG00000000483) #17	GRIK3 (ENSOMEG00000018771) #18	csf3r (ENSOMEG00000000488) #19	mrps15 (ENSOMEG00000000701) #20	ENSOMEG00000018849	OSCP1 (ENSOMEG00000018874) #22	STK40 (ENSOMEG00000018961) #23	eva1ba (ENSOMEG00000018998) #24	sh3d21 (ENSOMEG00000019023) #25	THRAP3 (ENSOMEG00000019164) #26	MAP7D1 (ENSOMEG00000019294) #27	MAP3K6 (ENSOMEG00000019496) #28	snip1 (ENSOMEG00000019541)	dnali1 (ENSOMEG00000019563) #30	gnl2 (ENSOMEG00000019611) #31	rspo1 (ENSOMEG00000019637) #32	utp11 (ENSOMEG00000019654) #34	FHL3 (ENSOMEG00000019712) #33	rragca (ENSOMEG00000000525) #36	MYCBP (ENSOMEG00000019821) #37	ENSOMEG00000019842
Javanese ricefish	MODERN SPECIES	7	ppp1r8b (ENSOJAG00000003104)	THEMIS2 (ENSOJAG00000003121)	rpa2 (ENSOJAG00000003153) #7	smpdl3b (ENSOJAG00000003190) #8	mecr (ENSOJAG00000003202) #9	LIN28A (ENSOJAG00000003246) #10	MANEAL (ENSOJAG00000003254) #11	yrdc (ENSOJAG00000003259) #12	mtf1 (ENSOJAG00000003279) #13	INPP5B (ENSOJAG00000003535) #14	ENSOJAG00000004681 #15	ZC3H12A (ENSOJAG00000004692) #17	ENSOJAG00000004702	GRIK3 (ENSOJAG00000004802) #18	CSF3R (ENSOJAG00000005292) #19	OSCP1 (ENSOJAG00000005328) #22	ENSOJAG00000005568 #21	STK40 (ENSOJAG00000005584) #23	eva1ba (ENSOJAG00000005620) #24	sh3d21 (ENSOJAG00000005635) #25	THRAP3 (ENSOJAG00000005670) #26	ENSOJAG00000005706	MAP7D1 (ENSOJAG00000005723) #27	ENSOJAG00000006023 #28	SNIP1 (ENSOJAG00000008177) #29	dnali1 (ENSOJAG00000008190) #30	gnl2 (ENSOJAG00000008221) #31	rspo1 (ENSOJAG00000008324) #32	FHL3 (ENSOJAG00000008350) #33	utp11 (ENSOJAG00000008374) #34	pou3f1 (ENSOJAG00000008412) #35
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Chinese medaka	MODERN SPECIES	1121	THEMIS2 (ENSOSIG00000012961)	rpa2 (ENSOSIG00000012958) #7	smpdl3b (ENSOSIG00000012956) #8	mecr (ENSOSIG00000012927) #9	MANEAL (ENSOSIG00000012920) #11	yrdc (ENSOSIG00000012916) #12	mtf1 (ENSOSIG00000012847) #13	INPP5B (ENSOSIG00000011093) #14	ENSOSIG00000011078 #15	ZC3H12A (ENSOSIG00000011076) #17	ENSOSIG00000011075	GRIK3 (ENSOSIG00000008739) #18	csf3r (ENSOSIG00000008736) #19	mrps15 (ENSOSIG00000008734) #20	ENSOSIG00000008733 #21	OSCP1 (ENSOSIG00000008586) #22	STK40 (ENSOSIG00000008577) #23	eva1ba (ENSOSIG00000008574) #24	sh3d21 (ENSOSIG00000008569) #25	THRAP3 (ENSOSIG00000008565) #26	MAP7D1 (ENSOSIG00000008559) #27	ENSOSIG00000008457 #28	SNIP1 (ENSOSIG00000008454) #29	dnali1 (ENSOSIG00000008453) #30	gnl2 (ENSOSIG00000008451) #31	rspo1 (ENSOSIG00000008445) #32	FHL3 (ENSOSIG00000008444) #33	utp11 (ENSOSIG00000008439) #34
Japanese Medaka HdrR	MODERN SPECIES	7	THEMIS2 (ENSORLG00000019607)	rpa2 (ENSORLG00000014309) #7	smpdl3b (ENSORLG00000014329) #8	mecr (ENSORLG00000014347) #9	ENSORLG00000028106 #10	MANEAL (ENSORLG00000014388) #11	yrdc (ENSORLG00000014393) #12	mtf1 (ENSORLG00000014411) #13	INPP5B (ENSORLG00000014438) #14	ZC3H12A (ENSORLG00000014448) #17	GRIK3 (ENSORLG00000014461) #18	ENSORLG00000026090	CSF3R (ENSORLG00000014472) #19	mrps15 (ENSORLG00000014487) #20	ENSORLG00000028871 #21	OSCP1 (ENSORLG00000014500) #22	STK40 (ENSORLG00000014517) #23	eva1ba (ENSORLG00000014522) #24	sh3d21 (ENSORLG00000014532) #25	THRAP3 (ENSORLG00000014550) #26	MAP7D1 (ENSORLG00000014562) #27	ENSORLG00000014582 #28	SNIP1 (ENSORLG00000014602) #29	ENSORLG00000014620 #30	gnl2 (ENSORLG00000014645) #31	rspo1 (ENSORLG00000014653) #32	FHL3 (ENSORLG00000014671) #33	ENSORLG00000021906	utp11 (ENSORLG00000014702) #34	pou3f1 (ENSORLG00000014708) #35	rragca (ENSORLG00000014739) #36
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Tetraodontidae	ANCESTRAL SPECIES	49												ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012.x.a #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Tetraodon	MODERN SPECIES	26	SV2A (ENSTNIG00000010299)	mtmr11 (ENSTNIG00000010300)	ntrk1 (ENSTNIG00000010301)	PAQR6 (ENSTNIG00000010302)	smg5 (ENSTNIG00000010303)	SYNGAP1 (ENSTNIG00000010304)	tm9sf2 (ENSTNIG00000003593)	ENSTNIG00000003592	ENSTNIG00000003591	ENSTNIG00000003590	ENSTNIG00000003589	PIEZO1 (ENSTNIG00000003588)	GRIK3 (ENSTNIG00000012189) #18	CSF3R (ENSTNIG00000001409) #19	mrps15 (ENSTNIG00000012190) #20	OSCP1 (ENSTNIG00000012191) #22	STK40 (ENSTNIG00000012192) #23	sh3d21 (ENSTNIG00000012193) #25	THRAP3 (ENSTNIG00000012194) #26	ENSTNIG00000012195 #27	dnali1 (ENSTNIG00000003732) #30	gnl2 (ENSTNIG00000003733) #31	abcd1 (ENSTNIG00000006189)	ENSTNIG00000003614	ENSTNIG00000005305	ENSTNIG00000005304	ENSTNIG00000000317	ENSTNIG00000005303	pus10 (ENSTNIG00000003362)	cct4 (ENSTNIG00000003361)	XPO1 (ENSTNIG00000003360)
Fugu	MODERN SPECIES	19	otud7b (ENSTRUG00000013218)	rbm8a (ENSTRUG00000013173)	ntrk1 (ENSTRUG00000012924)	PAQR6 (ENSTRUG00000012783)	smg5 (ENSTRUG00000012580)	SYNGAP1 (ENSTRUG00000012329)	ENSTRUG00000021243	rgl2 (ENSTRUG00000012178)	dnase2 (ENSTRUG00000012127)	pbx2 (ENSTRUG00000011925)	ENSTRUG00000027138	GRIK3 (ENSTRUG00000011437) #18	CSF3R (ENSTRUG00000011157) #19	mrps15 (ENSTRUG00000011129) #20	ENSTRUG00000021423 #21	OSCP1 (ENSTRUG00000011056) #22	STK40 (ENSTRUG00000010973) #23	eva1ba (ENSTRUG00000010950) #24	sh3d21 (ENSTRUG00000010927) #25	THRAP3 (ENSTRUG00000010702) #26	MAP7D1 (ENSTRUG00000010556) #27	ENSTRUG00000010218 #28	dnali1 (ENSTRUG00000010122) #30	gnl2 (ENSTRUG00000009789) #31	rspo1 (ENSTRUG00000009686) #32	FHL3 (ENSTRUG00000009493) #33	utp11 (ENSTRUG00000009375) #34	pou3f1 (ENSTRUG00000009356) #35	rragca (ENSTRUG00000009237) #36	ENSTRUG00000020122 #37	GJA9 (ENSTRUG00000033096)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Ballan wrasse	MODERN SPECIES	58												GRIK3 (ENSLBEG00000009256) #18	CSF3R (ENSLBEG00000009161) #19	mrps15 (ENSLBEG00000009087) #20	ENSLBEG00000009056 #21	OSCP1 (ENSLBEG00000009007) #22	STK40 (ENSLBEG00000008958) #23	ENSLBEG00000008935	eva1ba (ENSLBEG00000008911) #24	sh3d21 (ENSLBEG00000008879) #25	THRAP3 (ENSLBEG00000008813) #26	MAP7D1 (ENSLBEG00000008723) #27	ENSLBEG00000008678 #28	ENSLBEG00000008644 #28	ENSLBEG00000008632	dnali1 (ENSLBEG00000008589) #30	gnl2 (ENSLBEG00000008518) #31	rspo1 (ENSLBEG00000008477) #32	FHL3 (ENSLBEG00000008447) #33	utp11 (ENSLBEG00000008407) #34	pou3f1 (ENSLBEG00000008388) #35
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Perciformes	ANCESTRAL SPECIES	3	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Lumpfish	MODERN SPECIES	7	ppp1r8b (ENSCLMG00005006875)	THEMIS2 (ENSCLMG00005006876)	rpa2 (ENSCLMG00005006877) #7	smpdl3b (ENSCLMG00005006878) #8	mecr (ENSCLMG00005006881) #9	LIN28A (ENSCLMG00005007018) #10	MANEAL (ENSCLMG00005007019) #11	yrdc (ENSCLMG00005007021) #12	mtf1 (ENSCLMG00005007022) #13	INPP5B (ENSCLMG00005007032) #14	ZC3H12A (ENSCLMG00005008781) #17	GRIK3 (ENSCLMG00005008787) #18	csf3r (ENSCLMG00005009144) #19	mrps15 (ENSCLMG00005009146) #20	ENSCLMG00005009147 #21	OSCP1 (ENSCLMG00005009149) #22	STK40 (ENSCLMG00005009160) #23	eva1ba (ENSCLMG00005009161) #24	sh3d21 (ENSCLMG00005009162) #25	THRAP3 (ENSCLMG00005009163) #26	MAP7D1 (ENSCLMG00005009165) #27	MAP3K6 (ENSCLMG00005009166) #28	snip1 (ENSCLMG00005009356)	dnali1 (ENSCLMG00005009357) #30	gnl2 (ENSCLMG00005009359) #31	rspo1 (ENSCLMG00005009363) #32	FHL3 (ENSCLMG00005009368) #33	utp11 (ENSCLMG00005009369) #34	pou3f1 (ENSCLMG00005009370) #35	rragca (ENSCLMG00005009371) #36	ENSCLMG00005009372 #37
Stickleback	MODERN SPECIES	19	rpa2 (ENSGACG00000013909) #7	smpdl3b (ENSGACG00000013903) #8	mecr (ENSGACG00000013897) #9	LIN28A (ENSGACG00000013893) #10	MANEAL (ENSGACG00000013887) #11	ENSGACG00000013885	yrdc (ENSGACG00000013878) #12	mtf1 (ENSGACG00000013875) #13	INPP5B (ENSGACG00000013866) #14	ENSGACG00000013863 #15	ZC3H12A (ENSGACG00000013859) #17	GRIK3 (ENSGACG00000013802) #18	ENSGACG00000013798	csf3r (ENSGACG00000013795) #19	mrps15 (ENSGACG00000013792) #20	OSCP1 (ENSGACG00000013774) #22	STK40 (ENSGACG00000013752) #23	eva1ba (ENSGACG00000013751) #24	sh3d21 (ENSGACG00000013749) #25	THRAP3 (ENSGACG00000013745) #26	ENSGACG00000013740 #27	ENSGACG00000013737 #27	MAP3K6 (ENSGACG00000013722) #28	snip1 (ENSGACG00000013718)	dnali1 (ENSGACG00000013717) #30	gnl2 (ENSGACG00000013692) #31	rspo1 (ENSGACG00000013691) #32	FHL3 (ENSGACG00000013685) #33	utp11 (ENSGACG00000013680) #34	pou3f1 (ENSGACG00000013679) #35	rragca (ENSGACG00000013678) #36
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000156115.d	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Pike perch	MODERN SPECIES	116	rpa2 (ENSSLUG00000021519) #7	smpdl3b (ENSSLUG00000021530) #8	mecr (ENSSLUG00000021568) #9	LIN28A (ENSSLUG00000021573) #10	MANEAL (ENSSLUG00000021577) #11	yrdc (ENSSLUG00000021583) #12	mtf1 (ENSSLUG00000021588) #13	INPP5B (ENSSLUG00000021701) #14	ENSSLUG00000023188	ZC3H12A (ENSSLUG00000023191) #17	ENSSLUG00000023196	GRIK3 (ENSSLUG00000023219) #18	csf3r (ENSSLUG00000023341) #19	mrps15 (ENSSLUG00000023350) #20	ENSSLUG00000002857 #21	OSCP1 (ENSSLUG00000002865) #22	STK40 (ENSSLUG00000002877) #23	eva1ba (ENSSLUG00000002889) #24	sh3d21 (ENSSLUG00000002896) #25	THRAP3 (ENSSLUG00000002906) #26	MAP7D1 (ENSSLUG00000002922) #27	MAP3K6 (ENSSLUG00000003332) #28	snip1 (ENSSLUG00000005225)	dnali1 (ENSSLUG00000005235) #30
Channel bull blenny	MODERN SPECIES	7	ppp1r8b (ENSCGOG00000011975)	THEMIS2 (ENSCGOG00000011979)	rpa2 (ENSCGOG00000011996) #7	smpdl3b (ENSCGOG00000012051) #8	mecr (ENSCGOG00000012059) #9	LIN28A (ENSCGOG00000012118) #10	MANEAL (ENSCGOG00000012121) #11	yrdc (ENSCGOG00000012124) #12	mtf1 (ENSCGOG00000012126) #13	INPP5B (ENSCGOG00000012194) #14	ZC3H12A (ENSCGOG00000013293) #17	GRIK3 (ENSCGOG00000013322) #18	csf3r (ENSCGOG00000014334) #19	mrps15 (ENSCGOG00000014339) #20	ENSCGOG00000014342 #21	OSCP1 (ENSCGOG00000014351) #22	STK40 (ENSCGOG00000014493) #23	eva1ba (ENSCGOG00000014536) #24	ENSCGOG00000014538	ENSCGOG00000014542 #26	MAP3K6 (ENSCGOG00000014586) #28	SNIP1 (ENSCGOG00000015239) #29	dnali1 (ENSCGOG00000015240) #30	gnl2 (ENSCGOG00000015253) #31	rspo1 (ENSCGOG00000015715) #32	FHL3 (ENSCGOG00000015722) #33	utp11 (ENSCGOG00000015727) #34	pou3f1 (ENSCGOG00000015755) #35	ENSCGOG00000015756	rragca (ENSCGOG00000015760) #36	ENSCGOG00000015842 #37
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000156115.d	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a	ENSGT00940000159442
European seabass	MODERN SPECIES	6	ENSDLAG00005030953	THEMIS2 (ENSDLAG00005013244)	ENSDLAG00005013211 #7	smpdl3b (ENSDLAG00005013189) #8	ENSDLAG00005013081 #9	ENSDLAG00005034052 #10	yrdc (ENSDLAG00005013053) #12	MANEAL (ENSDLAG00005027752) #11	mtf1 (ENSDLAG00005012917) #13	INPP5B (ENSDLAG00005011892) #14	ENSDLAG00005032500 #15	ZC3H12A (ENSDLAG00005011869) #17	GRIK3 (ENSDLAG00005009845) #18	csf3r (ENSDLAG00005009735) #19	mrps15 (ENSDLAG00005030986) #20	OSCP1 (ENSDLAG00005009654) #22	STK40 (ENSDLAG00005009633) #23	eva1ba (ENSDLAG00005029823) #24	sh3d21 (ENSDLAG00005009583) #25	THRAP3 (ENSDLAG00005009555) #26	MAP7D1 (ENSDLAG00005009499) #27	ENSDLAG00005008475 #28	dnali1 (ENSDLAG00005034656) #30	gnl2 (ENSDLAG00005007540) #31	rspo1 (ENSDLAG00005007510) #32	FHL3 (ENSDLAG00005007500) #33	utp11 (ENSDLAG00005007490) #34	pou3f1 (ENSDLAG00005029296) #35	rragca (ENSDLAG00005007481) #36	ENSDLAG00005029266 #37	GJA9 (ENSDLAG00005007475)
Large yellow croaker	MODERN SPECIES	484	ppp1r8b (ENSLCRG00005012053)	rpa2 (ENSLCRG00005012054) #7	smpdl3b (ENSLCRG00005012055) #8	mecr (ENSLCRG00005012057) #9	LIN28A (ENSLCRG00005012058) #10	MANEAL (ENSLCRG00005012059) #11	yrdc (ENSLCRG00005002976) #12	mtf1 (ENSLCRG00005003083) #13	INPP5B (ENSLCRG00005003620) #14	ENSLCRG00005005318 #15	ZC3H12A (ENSLCRG00005005327) #17	GRIK3 (ENSLCRG00005005377) #18	csf3r (ENSLCRG00005005672) #19	mrps15 (ENSLCRG00005005702) #20	ENSLCRG00005005712	OSCP1 (ENSLCRG00005005741) #22	STK40 (ENSLCRG00005005869) #23	eva1ba (ENSLCRG00005005900) #24	sh3d21 (ENSLCRG00005005906) #25	THRAP3 (ENSLCRG00005005916) #26	MAP7D1 (ENSLCRG00005005931) #27	ENSLCRG00005006336 #28	snip1 (ENSLCRG00005009965)	dnali1 (ENSLCRG00005009982) #30	gnl2 (ENSLCRG00005010011) #31	rspo1 (ENSLCRG00005010051) #32	FHL3 (ENSLCRG00005010057) #33	utp11 (ENSLCRG00005010070) #34	pou3f1 (ENSLCRG00005010081) #35	rragca (ENSLCRG00005010089) #36	ENSLCRG00005010093
Gilthead seabream	MODERN SPECIES	8	THEMIS2 (ENSSAUG00010017559)	rpa2 (ENSSAUG00010017562) #7	smpdl3b (ENSSAUG00010017563) #8	mecr (ENSSAUG00010017566) #9	LIN28A (ENSSAUG00010017594) #10	MANEAL (ENSSAUG00010017595) #11	yrdc (ENSSAUG00010017597) #12	mtf1 (ENSSAUG00010017599) #13	INPP5B (ENSSAUG00010017637) #14	ENSSAUG00010017943 #15	ZC3H12A (ENSSAUG00010017948) #17	GRIK3 (ENSSAUG00010017988) #18	csf3r (ENSSAUG00010020713) #19	mrps15 (ENSSAUG00010020715) #20	ENSSAUG00010020716 #21	OSCP1 (ENSSAUG00010020717) #22	STK40 (ENSSAUG00010020718) #23	eva1ba (ENSSAUG00010020720) #24	sh3d21 (ENSSAUG00010020721) #25	THRAP3 (ENSSAUG00010020723) #26	MAP7D1 (ENSSAUG00010020726) #27	MAP3K6 (ENSSAUG00010020734) #28	snip1 (ENSSAUG00010015005)	dnali1 (ENSSAUG00010015007) #30	gnl2 (ENSSAUG00010015013) #31	rspo1 (ENSSAUG00010015022) #32	FHL3 (ENSSAUG00010015024) #33	utp11 (ENSSAUG00010015030) #34	pou3f1 (ENSSAUG00010015032) #35	rragca (ENSSAUG00010015034) #36	ENSSAUG00010015039 #37
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915.u #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915.u #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Climbing perch	MODERN SPECIES	7	ENSATEG00000010326	THEMIS2 (ENSATEG00000010317)	ENSATEG00000010293 #7	smpdl3b (ENSATEG00000028395) #8	ENSATEG00000010252 #9	ENSATEG00000010132 #10	MANEAL (ENSATEG00000010095) #11	yrdc (ENSATEG00000026326) #12	mtf1 (ENSATEG00000025917) #13	INPP5B (ENSATEG00000010044) #14	ZC3H12A (ENSATEG00000009946) #17	GRIK3 (ENSATEG00000009899) #18	csf3r (ENSATEG00000009872) #19	mrps15 (ENSATEG00000009826) #20	ENSATEG00000009806 #21	OSCP1 (ENSATEG00000009753) #22	STK40 (ENSATEG00000009695) #23	eva1ba (ENSATEG00000009674) #24	sh3d21 (ENSATEG00000009649) #25	THRAP3 (ENSATEG00000009618) #26	ENSATEG00000009579	ENSATEG00000009403 #28	dnali1 (ENSATEG00000009355) #30	gnl2 (ENSATEG00000009311) #31	rspo1 (ENSATEG00000009287) #32	FHL3 (ENSATEG00000009266) #33	utp11 (ENSATEG00000009240) #34	rragca (ENSATEG00000029155) #36	ENSATEG00000009198 #37	GJA9 (ENSATEG00000009189)	rhbdl2 (ENSATEG00000009166)
Siamese fighting fish	MODERN SPECIES	7	rpa2 (ENSBSLG00000023095) #7	smpdl3b (ENSBSLG00000023073) #8	mecr (ENSBSLG00000023034) #9	LIN28A (ENSBSLG00000023022) #10	MANEAL (ENSBSLG00000023019) #11	yrdc (ENSBSLG00000022987) #12	mtf1 (ENSBSLG00000022933) #13	INPP5B (ENSBSLG00000022431) #14	ENSBSLG00000022271 #15	ZC3H12A (ENSBSLG00000022267) #17	ENSBSLG00000022266	GRIK3 (ENSBSLG00000022127) #18	csf3r (ENSBSLG00000022045) #19	mrps15 (ENSBSLG00000022038) #20	ENSBSLG00000022016	OSCP1 (ENSBSLG00000022030) #22	STK40 (ENSBSLG00000021978) #23	eva1ba (ENSBSLG00000021956) #24	sh3d21 (ENSBSLG00000021927) #25	THRAP3 (ENSBSLG00000021912) #26	MAP7D1 (ENSBSLG00000021885) #27	ENSBSLG00000021441 #28	SNIP1 (ENSBSLG00000021403) #29	dnali1 (ENSBSLG00000021397) #30	gnl2 (ENSBSLG00000021296) #31	rspo1 (ENSBSLG00000021269) #32	FHL3 (ENSBSLG00000021242) #33	utp11 (ENSBSLG00000021215) #34	rragca (ENSBSLG00000021174) #36	MYCBP (ENSBSLG00000021126) #37	GJA9 (ENSBSLG00000021090)
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000007169	THEMIS2 (ENSMAMG00000007194)	ENSMAMG00000007223 #7	smpdl3b (ENSMAMG00000007230) #8	ENSMAMG00000027671 #9	ENSMAMG00000007271 #10	MANEAL (ENSMAMG00000007300) #11	yrdc (ENSMAMG00000028078) #12	mtf1 (ENSMAMG00000007324) #13	INPP5B (ENSMAMG00000007345) #14	ZC3H12A (ENSMAMG00000007494) #17	GRIK3 (ENSMAMG00000007505) #18	csf3r (ENSMAMG00000007544) #19	mrps15 (ENSMAMG00000007572) #20	ENSMAMG00000007593	OSCP1 (ENSMAMG00000007603) #22	STK40 (ENSMAMG00000007611) #23	eva1ba (ENSMAMG00000007649) #24	sh3d21 (ENSMAMG00000007666) #25	THRAP3 (ENSMAMG00000007707) #26	MAP7D1 (ENSMAMG00000007741) #27	ENSMAMG00000007781 #28	dnali1 (ENSMAMG00000027064) #30	gnl2 (ENSMAMG00000007823) #31	rspo1 (ENSMAMG00000007882) #32	FHL3 (ENSMAMG00000007894) #33	utp11 (ENSMAMG00000007927) #34	pou3f1 (ENSMAMG00000007950) #35	rragca (ENSMAMG00000007964) #36	ENSMAMG00000008023 #37	rhbdl2 (ENSMAMG00000026530)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Seriola	ANCESTRAL SPECIES	48	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Greater amberjack	MODERN SPECIES	154	rpa2 (ENSSDUG00000009641) #7	smpdl3b (ENSSDUG00000009653) #8	mecr (ENSSDUG00000009675) #9	LIN28A (ENSSDUG00000009722) #10	ENSSDUG00000009740 #11	MANEAL (ENSSDUG00000009753) #11	yrdc (ENSSDUG00000009775) #12	mtf1 (ENSSDUG00000009784) #13	INPP5B (ENSSDUG00000009812) #14	ENSSDUG00000009859 #16	ZC3H12A (ENSSDUG00000009879) #17	GRIK3 (ENSSDUG00000009891) #18	csf3r (ENSSDUG00000009924) #19	mrps15 (ENSSDUG00000009946) #20	ENSSDUG00000009969 #21	OSCP1 (ENSSDUG00000009984) #22	STK40 (ENSSDUG00000010024) #23	eva1ba (ENSSDUG00000010078) #24	sh3d21 (ENSSDUG00000010098) #25	THRAP3 (ENSSDUG00000010132) #26	MAP7D1 (ENSSDUG00000010208) #27	MAP3K6 (ENSSDUG00000010287) #28	SNIP1 (ENSSDUG00000010325) #29	dnali1 (ENSSDUG00000010345) #30	gnl2 (ENSSDUG00000010382) #31	rspo1 (ENSSDUG00000010472) #32	FHL3 (ENSSDUG00000010483) #33	utp11 (ENSSDUG00000010501) #34	pou3f1 (ENSSDUG00000010532) #35	rragca (ENSSDUG00000010543) #36	ENSSDUG00000010570 #37
Yellowtail amberjack	MODERN SPECIES	2938											ZC3H12A (ENSSLDG00000003826) #17	GRIK3 (ENSSLDG00000003728) #18	csf3r (ENSSLDG00000003702) #19	mrps15 (ENSSLDG00000003653) #20	ENSSLDG00000003618 #21	OSCP1 (ENSSLDG00000003542) #22	STK40 (ENSSLDG00000003439) #23	eva1ba (ENSSLDG00000003421) #24	sh3d21 (ENSSLDG00000003350) #25	THRAP3 (ENSSLDG00000003306) #26	MAP3K6 (ENSSLDG00000003273) #28	SNIP1 (ENSSLDG00000003260) #29	dnali1 (ENSSLDG00000003211) #30	gnl2 (ENSSLDG00000003122) #31	rspo1 (ENSSLDG00000003101) #32	FHL3 (ENSSLDG00000003064) #33	utp11 (ENSSLDG00000002990) #34	pou3f1 (ENSSLDG00000002965) #35	rragca (ENSSLDG00000002931) #36	ENSSLDG00000002881 #37	GJA9 (ENSSLDG00000002865)
Barramundi perch	MODERN SPECIES	104													CSF3R (ENSLCAG00010003642) #19	mrps15 (ENSLCAG00010003634) #20	ENSLCAG00010003627 #21	OSCP1 (ENSLCAG00010003615) #22	STK40 (ENSLCAG00010003605) #23	eva1ba (ENSLCAG00010003602) #24	sh3d21 (ENSLCAG00010003598) #25	THRAP3 (ENSLCAG00010003595) #26	MAP7D1 (ENSLCAG00010003586) #27	ENSLCAG00010003538 #28	snip1 (ENSLCAG00010003515)	dnali1 (ENSLCAG00010003510) #30	gnl2 (ENSLCAG00010003490) #31	rspo1 (ENSLCAG00010003470) #32	FHL3 (ENSLCAG00010003463) #33	utp11 (ENSLCAG00010003455) #34	pou3f1 (ENSLCAG00010003450) #35	rragca (ENSLCAG00010003445) #36	ENSLCAG00010003436 #37
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000178211	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Turbot	MODERN SPECIES		ENSSMAG00000005358	THEMIS2 (ENSSMAG00000005346)	ENSSMAG00000005300 #7	smpdl3b (ENSSMAG00000005250) #8	ENSSMAG00000005269 #9	ENSSMAG00000005221 #10	MANEAL (ENSSMAG00000005209) #11	yrdc (ENSSMAG00000005195) #12	mtf1 (ENSSMAG00000005172) #13	INPP5B (ENSSMAG00000005147) #14	ZC3H12A (ENSSMAG00000005140) #17	GRIK3 (ENSSMAG00000005100) #18	csf3r (ENSSMAG00000003925) #19	mrps15 (ENSSMAG00000003899) #20	ENSSMAG00000003843	OSCP1 (ENSSMAG00000003827) #22	STK40 (ENSSMAG00000003802) #23	eva1ba (ENSSMAG00000023907) #24	sh3d21 (ENSSMAG00000003747) #25	THRAP3 (ENSSMAG00000003703) #26	MAP7D1 (ENSSMAG00000003648) #27	ENSSMAG00000003583 #28	SNIP1 (ENSSMAG00000003570) #29	dnali1 (ENSSMAG00000003563) #30	gnl2 (ENSSMAG00000003472) #31	rspo1 (ENSSMAG00000003444) #32	FHL3 (ENSSMAG00000027104) #33	utp11 (ENSSMAG00000003346) #34	ENSSMAG00000035984	pou3f1 (ENSSMAG00000003341) #35	rragca (ENSSMAG00000003327) #36
Tongue sole	MODERN SPECIES	4	smpdl3b (ENSCSEG00000019113) #8	mecr (ENSCSEG00000019099) #9	LIN28A (ENSCSEG00000019091) #10	MANEAL (ENSCSEG00000019083) #11	yrdc (ENSCSEG00000019075) #12	mtf1 (ENSCSEG00000019069) #13	INPP5B (ENSCSEG00000019058) #14	ENSCSEG00000019048	ZC3H12A (ENSCSEG00000019043) #17	ENSCSEG00000019040	ENSCSEG00000019035	GRIK3 (ENSCSEG00000019032) #18	csf3r (ENSCSEG00000019010) #19	mrps15 (ENSCSEG00000019008) #20	ENSCSEG00000019006	OSCP1 (ENSCSEG00000019001) #22	STK40 (ENSCSEG00000018992) #23	eva1ba (ENSCSEG00000018985) #24	prpf31 (ENSCSEG00000018961)	ENSCSEG00000018956	leng1 (ENSCSEG00000018955)	ENSCSEG00000018948	mboat7 (ENSCSEG00000018924)	rps9 (ENSCSEG00000018918)	rbfox1l (ENSCSEG00000018898)	leng8 (ENSCSEG00000018887)	cdc42ep5 (ENSCSEG00000018881)	grwd1 (ENSCSEG00000018851)	flcn (ENSCSEG00000018835)	CACNG8 (ENSCSEG00000018830)	CACNG7 (ENSCSEG00000018828)
Tiger tail seahorse	MODERN SPECIES	114	ENSHCOG00000006760	ethe1 (ENSHCOG00000006738)	ENSHCOG00000006719	rpa2 (ENSHCOG00000006700) #7	smpdl3b (ENSHCOG00000006676) #8	mecr (ENSHCOG00000006647) #9	LIN28A (ENSHCOG00000006614) #10	ENSHCOG00000006606	yrdc (ENSHCOG00000006598) #12	mtf1 (ENSHCOG00000006581) #13	INPP5B (ENSHCOG00000006376) #14	GRIK3 (ENSHCOG00000006208) #18	csf3r (ENSHCOG00000006170) #19	mrps15 (ENSHCOG00000006158) #20	ENSHCOG00000006136	OSCP1 (ENSHCOG00000006119) #22	STK40 (ENSHCOG00000006048) #23	eva1ba (ENSHCOG00000006030) #24