Neopterygii	ANCESTRAL SPECIES	56	ENSGT00810000125524 #31	ENSGT00990000203803 #16	ENSGT00940000155107.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000162179.e.a.b	ENSGT00940000160262	ENSGT01050000244848.B.a.b	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00390000004808 #22	ENSGT00510000048364	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a #26	ENSGT00950000182941.a.a.b #27	ENSGT00940000159398 #28
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	4	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb #37	ENSGT00950000183031.A.a.a #36	ENSGT00940000165372 #35	ENSGT00390000005813 #34	ENSGT00950000183028.a.b.a #33	ENSGT00940000158871 #32	ENSGT00810000125524 #31	ENSGT00990000203803 #16	ENSGT00940000155107.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00940000166920
Clupeocephala	ANCESTRAL SPECIES		ENSGT00940000156115.d	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Acanthomorphata	ANCESTRAL SPECIES	38	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pomacentridae	ANCESTRAL SPECIES	35	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553.f #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553.f #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553.f #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Orange clownfish	MODERN SPECIES	21	THEMIS2 (ENSAPEG00000006354)	rpa2 (ENSAPEG00000006317) #7	smpdl3b (ENSAPEG00000006295) #8	mecr (ENSAPEG00000006248) #9	LIN28A (ENSAPEG00000006197) #10	MANEAL (ENSAPEG00000006178) #11	yrdc (ENSAPEG00000006164) #12	mtf1 (ENSAPEG00000006125) #13	INPP5B (ENSAPEG00000006094) #14	ENSAPEG00000006078 #15	ZC3H12A (ENSAPEG00000006072) #17	GRIK3 (ENSAPEG00000006019) #18	csf3r (ENSAPEG00000005997) #19	mrps15 (ENSAPEG00000005965) #20	ENSAPEG00000005981 #21	OSCP1 (ENSAPEG00000005918) #22	STK40 (ENSAPEG00000005892) #23	eva1ba (ENSAPEG00000005773) #24	sh3d21 (ENSAPEG00000005738) #25	THRAP3 (ENSAPEG00000005696) #26	MAP7D1 (ENSAPEG00000005614) #27	MAP3K6 (ENSAPEG00000005570) #28	SNIP1 (ENSAPEG00000005542) #29	dnali1 (ENSAPEG00000005453) #30	gnl2 (ENSAPEG00000005375) #31	rspo1 (ENSAPEG00000005307) #32	FHL3 (ENSAPEG00000005272) #33	utp11 (ENSAPEG00000005214) #34	pou3f1 (ENSAPEG00000005174) #35	rragca (ENSAPEG00000005106) #36	MYCBP (ENSAPEG00000005073) #37
Clown anemonefish	MODERN SPECIES	1296							mtf1 (ENSAOCG00000015058) #13	INPP5B (ENSAOCG00000014998) #14	ENSAOCG00000014980	ENSAOCG00000001847 #16	ZC3H12A (ENSAOCG00000014937) #17	GRIK3 (ENSAOCG00000002707) #18	csf3r (ENSAOCG00000014880) #19	mrps15 (ENSAOCG00000014871) #20	ENSAOCG00000001009 #21	OSCP1 (ENSAOCG00000001002) #22	STK40 (ENSAOCG00000000999) #23	eva1ba (ENSAOCG00000014770) #24	sh3d21 (ENSAOCG00000000988) #25	THRAP3 (ENSAOCG00000014738) #26	MAP7D1 (ENSAOCG00000014698) #27	MAP3K6 (ENSAOCG00000014625) #28	SNIP1 (ENSAOCG00000014455) #29	dnali1 (ENSAOCG00000014444) #30	gnl2 (ENSAOCG00000014396) #31	rspo1 (ENSAOCG00000014341) #32	FHL3 (ENSAOCG00000014316) #33
Spiny chromis	MODERN SPECIES		THEMIS2 (ENSAPOG00000000959)	rpa2 (ENSAPOG00000024130) #7	smpdl3b (ENSAPOG00000024163) #8	mecr (ENSAPOG00000024202) #9	LIN28A (ENSAPOG00000024256) #10	MANEAL (ENSAPOG00000024286) #11	yrdc (ENSAPOG00000024293) #12	mtf1 (ENSAPOG00000024298) #13	INPP5B (ENSAPOG00000024312) #14	ENSAPOG00000024319 #15	ZC3H12A (ENSAPOG00000024328) #17	GRIK3 (ENSAPOG00000024373) #18	csf3r (ENSAPOG00000024384) #19	mrps15 (ENSAPOG00000024393) #20	ENSAPOG00000024397	OSCP1 (ENSAPOG00000024408) #22	STK40 (ENSAPOG00000024423) #23	eva1ba (ENSAPOG00000024432) #24	sh3d21 (ENSAPOG00000024442) #25	THRAP3 (ENSAPOG00000024453) #26	MAP7D1 (ENSAPOG00000024474) #27	MAP3K6 (ENSAPOG00000024486) #28	SNIP1 (ENSAPOG00000024490) #29	dnali1 (ENSAPOG00000024495) #30	gnl2 (ENSAPOG00000024507) #31	rspo1 (ENSAPOG00000024512) #32	FHL3 (ENSAPOG00000024520) #33	utp11 (ENSAPOG00000024525) #34	pou3f1 (ENSAPOG00000024530) #35	rragca (ENSAPOG00000024532) #36	MYCBP (ENSAPOG00000024534) #37
Bicolor damselfish	MODERN SPECIES	964												GRIK3 (ENSSPAG00000020311) #18	CSF3R (ENSSPAG00000020340) #19	mrps15 (ENSSPAG00000020369) #20	ENSSPAG00000020390	OSCP1 (ENSSPAG00000020406) #22	STK40 (ENSSPAG00000020429) #23
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000178211	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000178211	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000166920	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000166920	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000166920	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Zebra mbuna	MODERN SPECIES	1093	rpa2 (ENSMZEG00005006788) #7	smpdl3b (ENSMZEG00005006809) #8	mecr (ENSMZEG00005006826) #9	LIN28A (ENSMZEG00005006914) #10	MANEAL (ENSMZEG00005006934) #11	yrdc (ENSMZEG00005006948) #12	mtf1 (ENSMZEG00005006956) #13	INPP5B (ENSMZEG00005006964) #14	ENSMZEG00005006982	ENSMZEG00005006991 #15	ZC3H12A (ENSMZEG00005006997) #17	GRIK3 (ENSMZEG00005007006) #18	csf3r (ENSMZEG00005007036) #19	mrps15 (ENSMZEG00005007070) #20	ENSMZEG00005007095 #21	OSCP1 (ENSMZEG00005007120) #22	STK40 (ENSMZEG00005007149) #23	eva1ba (ENSMZEG00005007187) #24	sh3d21 (ENSMZEG00005007196) #25	THRAP3 (ENSMZEG00005007212) #26	MAP7D1 (ENSMZEG00005007251) #27	ENSMZEG00005007342 #28	SNIP1 (ENSMZEG00005007365) #29	dnali1 (ENSMZEG00005007377) #30	gnl2 (ENSMZEG00005007393) #31	cox5aa (ENSMZEG00005007429)	ENSMZEG00005007454	irgq2 (ENSMZEG00005007489)	ENSMZEG00005007501	ENSMZEG00005007520	ethe1 (ENSMZEG00005007535)
Eastern happy	MODERN SPECIES	2	THEMIS2 (ENSACLG00000027754)	rpa2 (ENSACLG00000027761) #7	smpdl3b (ENSACLG00000027765) #8	mecr (ENSACLG00000027767) #9	LIN28A (ENSACLG00000027769) #10	MANEAL (ENSACLG00000027772) #11	yrdc (ENSACLG00000027775) #12	mtf1 (ENSACLG00000027779) #13	INPP5B (ENSACLG00000027782) #14	ENSACLG00000027799 #15	ZC3H12A (ENSACLG00000027801) #17	GRIK3 (ENSACLG00000027806) #18	csf3r (ENSACLG00000027809) #19	mrps15 (ENSACLG00000027820) #20	ENSACLG00000027824 #21	OSCP1 (ENSACLG00000027829) #22	STK40 (ENSACLG00000027839) #23	eva1ba (ENSACLG00000027847) #24	sh3d21 (ENSACLG00000027848) #25	THRAP3 (ENSACLG00000027851) #26	ENSACLG00000027855	MAP7D1 (ENSACLG00000000048) #27	ENSACLG00000000084 #28	SNIP1 (ENSACLG00000000108) #29	ENSACLG00000000115	dnali1 (ENSACLG00000000265) #30	rspo1 (ENSACLG00000000298) #32	FHL3 (ENSACLG00000000312) #33	utp11 (ENSACLG00000000339) #34	pou3f1 (ENSACLG00000000389) #35	rragca (ENSACLG00000000534) #36
P. nyererei	MODERN SPECIES	362	THEMIS2 (ENSPNYG00000014138)	rpa2 (ENSPNYG00000014117) #7	smpdl3b (ENSPNYG00000014090) #8	mecr (ENSPNYG00000014066) #9	LIN28A (ENSPNYG00000014005) #10	MANEAL (ENSPNYG00000013969) #11	yrdc (ENSPNYG00000013956) #12	mtf1 (ENSPNYG00000013739) #13	INPP5B (ENSPNYG00000013593) #14	ENSPNYG00000013556	ZC3H12A (ENSPNYG00000013534) #17	GRIK3 (ENSPNYG00000013498) #18	csf3r (ENSPNYG00000013467) #19	mrps15 (ENSPNYG00000013431) #20	ENSPNYG00000013414 #21	ENSPNYG00000013399 #22	STK40 (ENSPNYG00000013365) #23	eva1ba (ENSPNYG00000013357) #24	sh3d21 (ENSPNYG00000013339) #25	THRAP3 (ENSPNYG00000013314) #26	MAP7D1 (ENSPNYG00000013285) #27	ENSPNYG00000013247 #28	SNIP1 (ENSPNYG00000013230) #29	dnali1 (ENSPNYG00000013211) #30	ENSPNYG00000013195	rspo1 (ENSPNYG00000013177) #32	FHL3 (ENSPNYG00000013162) #33	utp11 (ENSPNYG00000013140) #34	pou3f1 (ENSPNYG00000013130) #35	rragca (ENSPNYG00000013099) #36	MYCBP (ENSPNYG00000013028) #37
Burton s mouthbrooder	MODERN SPECIES	340	ppp1r8b (ENSHBUG00000009124)	THEMIS2 (ENSHBUG00000009185)	rpa2 (ENSHBUG00000009205) #7	mecr (ENSHBUG00000009249) #9	smpdl3b (ENSHBUG00000009222) #8	LIN28A (ENSHBUG00000009265) #10	MANEAL (ENSHBUG00000009290) #11	yrdc (ENSHBUG00000009298) #12	mtf1 (ENSHBUG00000009314) #13	INPP5B (ENSHBUG00000009350) #14	ZC3H12A (ENSHBUG00000009356) #17	GRIK3 (ENSHBUG00000009396) #18	csf3r (ENSHBUG00000009429) #19	mrps15 (ENSHBUG00000009456) #20	ENSHBUG00000009469 #21	OSCP1 (ENSHBUG00000009513) #22	STK40 (ENSHBUG00000009547) #23	eva1ba (ENSHBUG00000009558) #24	sh3d21 (ENSHBUG00000009579) #25	THRAP3 (ENSHBUG00000009602) #26	MAP7D1 (ENSHBUG00000009652) #27	ENSHBUG00000009741 #28	SNIP1 (ENSHBUG00000009756) #29	dnali1 (ENSHBUG00000009777) #30	ENSHBUG00000000835	rspo1 (ENSHBUG00000009811) #32	FHL3 (ENSHBUG00000009864) #33	utp11 (ENSHBUG00000009895) #34	pou3f1 (ENSHBUG00000009911) #35	rragca (ENSHBUG00000009931) #36	MYCBP (ENSHBUG00000009957) #37
Lyretail cichlid	MODERN SPECIES	311	smpdl3b (ENSNBRG00000009357) #8	mecr (ENSNBRG00000009406) #9	LIN28A (ENSNBRG00000009446) #10	MANEAL (ENSNBRG00000009462) #11	yrdc (ENSNBRG00000009475) #12	mtf1 (ENSNBRG00000009532) #13	ENSNBRG00000009559 #14	ENSNBRG00000009571 #14	ENSNBRG00000009581	ZC3H12A (ENSNBRG00000009607) #17	GRIK3 (ENSNBRG00000009631) #18	ENSNBRG00000009681	csf3r (ENSNBRG00000009712) #19	mrps15 (ENSNBRG00000009851) #20	ENSNBRG00000009860 #21	OSCP1 (ENSNBRG00000009883) #22	STK40 (ENSNBRG00000009915) #23	eva1ba (ENSNBRG00000009946) #24	sh3d21 (ENSNBRG00000009956) #25	THRAP3 (ENSNBRG00000009991) #26	MAP7D1 (ENSNBRG00000010005) #27	ENSNBRG00000010049 #28	SNIP1 (ENSNBRG00000010257) #29	dnali1 (ENSNBRG00000010268) #30	gnl2 (ENSNBRG00000010291) #31	rspo1 (ENSNBRG00000010347) #32	FHL3 (ENSNBRG00000010416) #33	utp11 (ENSNBRG00000010435) #34	pou3f1 (ENSNBRG00000010456) #35	rragca (ENSNBRG00000010467) #36	MYCBP (ENSNBRG00000010493) #37
Nile tilapia	MODERN SPECIES	2	rpa2 (ENSONIG00000016196) #7	smpdl3b (ENSONIG00000016198) #8	mecr (ENSONIG00000016200) #9	LIN28A (ENSONIG00000016204) #10	MANEAL (ENSONIG00000030626) #11	yrdc (ENSONIG00000016213) #12	mtf1 (ENSONIG00000016218) #13	INPP5B (ENSONIG00000016229) #14	ENSONIG00000030694	ENSONIG00000037129 #15	ZC3H12A (ENSONIG00000016235) #17	GRIK3 (ENSONIG00000016238) #18	csf3r (ENSONIG00000016254) #19	mrps15 (ENSONIG00000016261) #20	ENSONIG00000043059 #21	OSCP1 (ENSONIG00000016265) #22	STK40 (ENSONIG00000037285) #23	eva1b (ENSONIG00000042590) #24	sh3d21 (ENSONIG00000016273) #25	THRAP3 (ENSONIG00000016278) #26	MAP7D1 (ENSONIG00000016283) #27	ENSONIG00000016285 #28	ENSONIG00000041284	SNIP1 (ENSONIG00000016290) #29	dnali1 (ENSONIG00000016300) #30	ENSONIG00000016291	rspo1 (ENSONIG00000016302) #32	fhl3 (ENSONIG00000013661) #33	utp11 (ENSONIG00000033069) #34	pou3f1 (ENSONIG00000021113) #35	rragc (ENSONIG00000032190) #36
Midas cichlid	MODERN SPECIES	668	THEMIS2 (ENSACIG00000017207)	rpa2 (ENSACIG00000017220) #7	smpdl3b (ENSACIG00000017232) #8	mecr (ENSACIG00000017257) #9	LIN28A (ENSACIG00000017279) #10	ENSACIG00000017313 #11	MANEAL (ENSACIG00000017324) #11	yrdc (ENSACIG00000017330) #12	mtf1 (ENSACIG00000017387) #13	INPP5B (ENSACIG00000017714) #14	ZC3H12A (ENSACIG00000017750) #17	GRIK3 (ENSACIG00000017772) #18	csf3r (ENSACIG00000017809) #19	mrps15 (ENSACIG00000017933) #20	ENSACIG00000017948 #21	OSCP1 (ENSACIG00000018007) #22	STK40 (ENSACIG00000018038) #23	eva1ba (ENSACIG00000018069) #24	sh3d21 (ENSACIG00000018083) #25	ENSACIG00000018107	THRAP3 (ENSACIG00000018110) #26	MAP7D1 (ENSACIG00000018142) #27	ENSACIG00000018194 #28	SNIP1 (ENSACIG00000018325) #29	dnali1 (ENSACIG00000018337) #30	gnl2 (ENSACIG00000018346) #31	rspo1 (ENSACIG00000018378) #32	FHL3 (ENSACIG00000018508) #33	utp11 (ENSACIG00000018523) #34	pou3f1 (ENSACIG00000018538) #35	rragca (ENSACIG00000018548) #36
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
NAME_4	ANCESTRAL SPECIES	55	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000171773	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Mummichog	MODERN SPECIES	2410	THEMIS2 (ENSFHEG00000001053)	rpa2 (ENSFHEG00000001049) #7	smpdl3b (ENSFHEG00000001043) #8	mecr (ENSFHEG00000001041) #9	LIN28A (ENSFHEG00000001038) #10	ENSFHEG00000001035 #11	MANEAL (ENSFHEG00000001033) #11	yrdc (ENSFHEG00000001029) #12	mtf1 (ENSFHEG00000001026) #13	INPP5B (ENSFHEG00000001022) #14	ZC3H12A (ENSFHEG00000001019) #17	GRIK3 (ENSFHEG00000001018) #18	csf3r (ENSFHEG00000001015) #19	mrps15 (ENSFHEG00000001013) #20	ENSFHEG00000001010	OSCP1 (ENSFHEG00000001008) #22	STK40 (ENSFHEG00000001002) #23	eva1ba (ENSFHEG00000001000) #24	sh3d21 (ENSFHEG00000000996) #25	THRAP3 (ENSFHEG00000000989) #26	MAP7D1 (ENSFHEG00000000983) #27
Sheepshead minnow	MODERN SPECIES	118	THEMIS2 (ENSCVAG00000017238)	rpa2 (ENSCVAG00000017246) #7	smpdl3b (ENSCVAG00000017259) #8	mecr (ENSCVAG00000017299) #9	LIN28A (ENSCVAG00000017320) #10	MANEAL (ENSCVAG00000017347) #11	yrdc (ENSCVAG00000017355) #12	mtf1 (ENSCVAG00000017389) #13	INPP5B (ENSCVAG00000017401) #14	ENSCVAG00000017412 #15	ZC3H12A (ENSCVAG00000017420) #17	GRIK3 (ENSCVAG00000017478) #18	csf3r (ENSCVAG00000017491) #19	mrps15 (ENSCVAG00000017500) #20	ENSCVAG00000017521	OSCP1 (ENSCVAG00000017554) #22	STK40 (ENSCVAG00000017594) #23	eva1ba (ENSCVAG00000017604) #24	sh3d21 (ENSCVAG00000017624) #25	THRAP3 (ENSCVAG00000017634) #26	MAP7D1 (ENSCVAG00000017671) #27	MAP3K6 (ENSCVAG00000017684) #28	snip1 (ENSCVAG00000017689)	dnali1 (ENSCVAG00000017701) #30	gnl2 (ENSCVAG00000017712) #31	rspo1 (ENSCVAG00000000459) #32	FHL3 (ENSCVAG00000017747) #33	utp11 (ENSCVAG00000000900) #34	pou3f1 (ENSCVAG00000017958) #35	rragca (ENSCVAG00000017979) #36	ENSCVAG00000018007 #37
Poeciliinae	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Poecilia	ANCESTRAL SPECIES		ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
NAME_6	ANCESTRAL SPECIES	152	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00600000085609	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000171773	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31
Amazon molly	MODERN SPECIES	337	smpdl3b (ENSPFOG00000014131) #8	mecr (ENSPFOG00000014069) #9	LIN28A (ENSPFOG00000014054) #10	MANEAL (ENSPFOG00000014039) #11	yrdc (ENSPFOG00000023097) #12	mtf1 (ENSPFOG00000013962) #13	INPP5B (ENSPFOG00000013954) #14	ENSPFOG00000022057	ENSPFOG00000013949 #15	ZC3H12A (ENSPFOG00000013935) #17	GRIK3 (ENSPFOG00000013674) #18	ENSPFOG00000022696	csf3r (ENSPFOG00000013594) #19	mrps15 (ENSPFOG00000013553) #20	ENSPFOG00000013535	OSCP1 (ENSPFOG00000013493) #22	STK40 (ENSPFOG00000013431) #23	eva1ba (ENSPFOG00000013421) #24	sh3d21 (ENSPFOG00000013375) #25	THRAP3 (ENSPFOG00000013297) #26	MAP7D1 (ENSPFOG00000013255) #27	MAP3K6 (ENSPFOG00000013047) #28	SNIP1 (ENSPFOG00000013016) #29	dnali1 (ENSPFOG00000012981) #30	gnl2 (ENSPFOG00000012893) #31
Sailfin molly	MODERN SPECIES	307	ppp1r8b (ENSPLAG00000020714)	THEMIS2 (ENSPLAG00000020739)	rpa2 (ENSPLAG00000020750) #7	smpdl3b (ENSPLAG00000020801) #8	mecr (ENSPLAG00000020829) #9	LIN28A (ENSPLAG00000020857) #10	MANEAL (ENSPLAG00000020875) #11	yrdc (ENSPLAG00000020882) #12	mtf1 (ENSPLAG00000020935) #13	INPP5B (ENSPLAG00000020956) #14	ZC3H12A (ENSPLAG00000020965) #17	GRIK3 (ENSPLAG00000021016) #18	csf3r (ENSPLAG00000021030) #19	mrps15 (ENSPLAG00000000454) #20	ENSPLAG00000021045	OSCP1 (ENSPLAG00000021099) #22
Guppy	MODERN SPECIES	446	THEMIS2 (ENSPREG00000005131)	rpa2 (ENSPREG00000005162) #7	smpdl3b (ENSPREG00000005191) #8	mecr (ENSPREG00000005228) #9	LIN28A (ENSPREG00000005259) #10	MANEAL (ENSPREG00000005276) #11	yrdc (ENSPREG00000005285) #12	mtf1 (ENSPREG00000005331) #13	INPP5B (ENSPREG00000005365) #14	ENSPREG00000005442 #15	ZC3H12A (ENSPREG00000005453) #17	GRIK3 (ENSPREG00000005481) #18	csf3r (ENSPREG00000005562) #19	mrps15 (ENSPREG00000005592) #20	ENSPREG00000005621 #21	OSCP1 (ENSPREG00000005686) #22	STK40 (ENSPREG00000005733) #23	eva1ba (ENSPREG00000005771) #24	sh3d21 (ENSPREG00000005794) #25	THRAP3 (ENSPREG00000005816) #26	MAP7D1 (ENSPREG00000005854) #27	MAP3K6 (ENSPREG00000005903) #28	snip1 (ENSPREG00000005952)	dnali1 (ENSPREG00000005961) #30	gnl2 (ENSPREG00000005988) #31	rspo1 (ENSPREG00000006040) #32	FHL3 (ENSPREG00000006051) #33	utp11 (ENSPREG00000006068) #34	pou3f1 (ENSPREG00000006101) #35	rragca (ENSPREG00000006113) #36	ENSPREG00000006142 #37
Platyfish	MODERN SPECIES	17	THEMIS2 (ENSXMAG00000014548)	rpa2 (ENSXMAG00000014552) #7	smpdl3b (ENSXMAG00000026250) #8	mecr (ENSXMAG00000026077) #9	LIN28A (ENSXMAG00000014593) #10	MANEAL (ENSXMAG00000014596) #11	yrdc (ENSXMAG00000014606) #12	mtf1 (ENSXMAG00000014614) #13	INPP5B (ENSXMAG00000014629) #14	ENSXMAG00000021281 #15	ZC3H12A (ENSXMAG00000014646) #17	GRIK3 (ENSXMAG00000014647) #18	csf3r (ENSXMAG00000014732) #19	mrps15 (ENSXMAG00000028874) #20	ENSXMAG00000024500 #21	OSCP1 (ENSXMAG00000014752) #22	STK40 (ENSXMAG00000029028) #23	eva1ba (ENSXMAG00000001589) #24	sh3d21 (ENSXMAG00000001593) #25	THRAP3 (ENSXMAG00000014797) #26	MAP7D1 (ENSXMAG00000014815) #27	ENSXMAG00000014853 #28	SNIP1 (ENSXMAG00000014885) #29	dnali1 (ENSXMAG00000014886) #30	gnl2 (ENSXMAG00000014898) #31	rspo1 (ENSXMAG00000028817) #32	FHL3 (ENSXMAG00000029691) #33	utp11 (ENSXMAG00000013219) #34	pou3f1 (ENSXMAG00000019529) #35	rragca (ENSXMAG00000026290) #36	ENSXMAG00000013229 #37
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Mangrove rivulus	MODERN SPECIES	33	THEMIS2 (ENSKMAG00000013198)	rpa2 (ENSKMAG00000013233) #7	smpdl3b (ENSKMAG00000013382) #8	mecr (ENSKMAG00000013401) #9	LIN28A (ENSKMAG00000013435) #10	MANEAL (ENSKMAG00000013448) #11	yrdc (ENSKMAG00000013468) #12	mtf1 (ENSKMAG00000013485) #13	INPP5B (ENSKMAG00000013537) #14	ENSKMAG00000013581 #15	ZC3H12A (ENSKMAG00000013650) #17	GRIK3 (ENSKMAG00000013708) #18	csf3r (ENSKMAG00000013774) #19	mrps15 (ENSKMAG00000013807) #20	ENSKMAG00000013832 #21	OSCP1 (ENSKMAG00000013842) #22	STK40 (ENSKMAG00000013895) #23	eva1ba (ENSKMAG00000013927) #24	sh3d21 (ENSKMAG00000013951) #25
Oryzias	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Indian medaka	MODERN SPECIES	5	ENSOMEG00000018385	rpa2 (ENSOMEG00000018424) #7	smpdl3b (ENSOMEG00000018441) #8	mecr (ENSOMEG00000018484) #9	ENSOMEG00000018521 #10	MANEAL (ENSOMEG00000000478) #11	yrdc (ENSOMEG00000018550) #12	mtf1 (ENSOMEG00000018579) #13	INPP5B (ENSOMEG00000018665) #14	ENSOMEG00000018697 #15	ZC3H12A (ENSOMEG00000000483) #17	GRIK3 (ENSOMEG00000018771) #18	csf3r (ENSOMEG00000000488) #19	mrps15 (ENSOMEG00000000701) #20	ENSOMEG00000018849	OSCP1 (ENSOMEG00000018874) #22	STK40 (ENSOMEG00000018961) #23	eva1ba (ENSOMEG00000018998) #24	sh3d21 (ENSOMEG00000019023) #25	THRAP3 (ENSOMEG00000019164) #26	MAP7D1 (ENSOMEG00000019294) #27	MAP3K6 (ENSOMEG00000019496) #28	snip1 (ENSOMEG00000019541)	dnali1 (ENSOMEG00000019563) #30	gnl2 (ENSOMEG00000019611) #31	rspo1 (ENSOMEG00000019637) #32	utp11 (ENSOMEG00000019654) #34	FHL3 (ENSOMEG00000019712) #33	rragca (ENSOMEG00000000525) #36	MYCBP (ENSOMEG00000019821) #37	ENSOMEG00000019842
Javanese ricefish	MODERN SPECIES	7	ppp1r8b (ENSOJAG00000003104)	THEMIS2 (ENSOJAG00000003121)	rpa2 (ENSOJAG00000003153) #7	smpdl3b (ENSOJAG00000003190) #8	mecr (ENSOJAG00000003202) #9	LIN28A (ENSOJAG00000003246) #10	MANEAL (ENSOJAG00000003254) #11	yrdc (ENSOJAG00000003259) #12	mtf1 (ENSOJAG00000003279) #13	INPP5B (ENSOJAG00000003535) #14	ENSOJAG00000004681 #15	ZC3H12A (ENSOJAG00000004692) #17	ENSOJAG00000004702	GRIK3 (ENSOJAG00000004802) #18	CSF3R (ENSOJAG00000005292) #19	OSCP1 (ENSOJAG00000005328) #22	ENSOJAG00000005568 #21	STK40 (ENSOJAG00000005584) #23	eva1ba (ENSOJAG00000005620) #24	sh3d21 (ENSOJAG00000005635) #25	THRAP3 (ENSOJAG00000005670) #26	ENSOJAG00000005706	MAP7D1 (ENSOJAG00000005723) #27	ENSOJAG00000006023 #28	SNIP1 (ENSOJAG00000008177) #29	dnali1 (ENSOJAG00000008190) #30	gnl2 (ENSOJAG00000008221) #31	rspo1 (ENSOJAG00000008324) #32	FHL3 (ENSOJAG00000008350) #33	utp11 (ENSOJAG00000008374) #34	pou3f1 (ENSOJAG00000008412) #35
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Chinese medaka	MODERN SPECIES	1121	THEMIS2 (ENSOSIG00000012961)	rpa2 (ENSOSIG00000012958) #7	smpdl3b (ENSOSIG00000012956) #8	mecr (ENSOSIG00000012927) #9	MANEAL (ENSOSIG00000012920) #11	yrdc (ENSOSIG00000012916) #12	mtf1 (ENSOSIG00000012847) #13	INPP5B (ENSOSIG00000011093) #14	ENSOSIG00000011078 #15	ZC3H12A (ENSOSIG00000011076) #17	ENSOSIG00000011075	GRIK3 (ENSOSIG00000008739) #18	csf3r (ENSOSIG00000008736) #19	mrps15 (ENSOSIG00000008734) #20	ENSOSIG00000008733 #21	OSCP1 (ENSOSIG00000008586) #22	STK40 (ENSOSIG00000008577) #23	eva1ba (ENSOSIG00000008574) #24	sh3d21 (ENSOSIG00000008569) #25	THRAP3 (ENSOSIG00000008565) #26	MAP7D1 (ENSOSIG00000008559) #27	ENSOSIG00000008457 #28	SNIP1 (ENSOSIG00000008454) #29	dnali1 (ENSOSIG00000008453) #30	gnl2 (ENSOSIG00000008451) #31	rspo1 (ENSOSIG00000008445) #32	FHL3 (ENSOSIG00000008444) #33	utp11 (ENSOSIG00000008439) #34
Japanese Medaka HdrR	MODERN SPECIES	7	THEMIS2 (ENSORLG00000019607)	rpa2 (ENSORLG00000014309) #7	smpdl3b (ENSORLG00000014329) #8	mecr (ENSORLG00000014347) #9	ENSORLG00000028106 #10	MANEAL (ENSORLG00000014388) #11	yrdc (ENSORLG00000014393) #12	mtf1 (ENSORLG00000014411) #13	INPP5B (ENSORLG00000014438) #14	ZC3H12A (ENSORLG00000014448) #17	GRIK3 (ENSORLG00000014461) #18	ENSORLG00000026090	CSF3R (ENSORLG00000014472) #19	mrps15 (ENSORLG00000014487) #20	ENSORLG00000028871 #21	OSCP1 (ENSORLG00000014500) #22	STK40 (ENSORLG00000014517) #23	eva1ba (ENSORLG00000014522) #24	sh3d21 (ENSORLG00000014532) #25	THRAP3 (ENSORLG00000014550) #26	MAP7D1 (ENSORLG00000014562) #27	ENSORLG00000014582 #28	SNIP1 (ENSORLG00000014602) #29	ENSORLG00000014620 #30	gnl2 (ENSORLG00000014645) #31	rspo1 (ENSORLG00000014653) #32	FHL3 (ENSORLG00000014671) #33	ENSORLG00000021906	utp11 (ENSORLG00000014702) #34	pou3f1 (ENSORLG00000014708) #35	rragca (ENSORLG00000014739) #36
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Tetraodontidae	ANCESTRAL SPECIES	49												ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012.x.a #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Tetraodon	MODERN SPECIES	26	SV2A (ENSTNIG00000010299)	mtmr11 (ENSTNIG00000010300)	ntrk1 (ENSTNIG00000010301)	PAQR6 (ENSTNIG00000010302)	smg5 (ENSTNIG00000010303)	SYNGAP1 (ENSTNIG00000010304)	tm9sf2 (ENSTNIG00000003593)	ENSTNIG00000003592	ENSTNIG00000003591	ENSTNIG00000003590	ENSTNIG00000003589	PIEZO1 (ENSTNIG00000003588)	GRIK3 (ENSTNIG00000012189) #18	CSF3R (ENSTNIG00000001409) #19	mrps15 (ENSTNIG00000012190) #20	OSCP1 (ENSTNIG00000012191) #22	STK40 (ENSTNIG00000012192) #23	sh3d21 (ENSTNIG00000012193) #25	THRAP3 (ENSTNIG00000012194) #26	ENSTNIG00000012195 #27	dnali1 (ENSTNIG00000003732) #30	gnl2 (ENSTNIG00000003733) #31	abcd1 (ENSTNIG00000006189)	ENSTNIG00000003614	ENSTNIG00000005305	ENSTNIG00000005304	ENSTNIG00000000317	ENSTNIG00000005303	pus10 (ENSTNIG00000003362)	cct4 (ENSTNIG00000003361)	XPO1 (ENSTNIG00000003360)
Fugu	MODERN SPECIES	19	otud7b (ENSTRUG00000013218)	rbm8a (ENSTRUG00000013173)	ntrk1 (ENSTRUG00000012924)	PAQR6 (ENSTRUG00000012783)	smg5 (ENSTRUG00000012580)	SYNGAP1 (ENSTRUG00000012329)	ENSTRUG00000021243	rgl2 (ENSTRUG00000012178)	dnase2 (ENSTRUG00000012127)	pbx2 (ENSTRUG00000011925)	ENSTRUG00000027138	GRIK3 (ENSTRUG00000011437) #18	CSF3R (ENSTRUG00000011157) #19	mrps15 (ENSTRUG00000011129) #20	ENSTRUG00000021423 #21	OSCP1 (ENSTRUG00000011056) #22	STK40 (ENSTRUG00000010973) #23	eva1ba (ENSTRUG00000010950) #24	sh3d21 (ENSTRUG00000010927) #25	THRAP3 (ENSTRUG00000010702) #26	MAP7D1 (ENSTRUG00000010556) #27	ENSTRUG00000010218 #28	dnali1 (ENSTRUG00000010122) #30	gnl2 (ENSTRUG00000009789) #31	rspo1 (ENSTRUG00000009686) #32	FHL3 (ENSTRUG00000009493) #33	utp11 (ENSTRUG00000009375) #34	pou3f1 (ENSTRUG00000009356) #35	rragca (ENSTRUG00000009237) #36	ENSTRUG00000020122 #37	GJA9 (ENSTRUG00000033096)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Ballan wrasse	MODERN SPECIES	58												GRIK3 (ENSLBEG00000009256) #18	CSF3R (ENSLBEG00000009161) #19	mrps15 (ENSLBEG00000009087) #20	ENSLBEG00000009056 #21	OSCP1 (ENSLBEG00000009007) #22	STK40 (ENSLBEG00000008958) #23	ENSLBEG00000008935	eva1ba (ENSLBEG00000008911) #24	sh3d21 (ENSLBEG00000008879) #25	THRAP3 (ENSLBEG00000008813) #26	MAP7D1 (ENSLBEG00000008723) #27	ENSLBEG00000008678 #28	ENSLBEG00000008644 #28	ENSLBEG00000008632	dnali1 (ENSLBEG00000008589) #30	gnl2 (ENSLBEG00000008518) #31	rspo1 (ENSLBEG00000008477) #32	FHL3 (ENSLBEG00000008447) #33	utp11 (ENSLBEG00000008407) #34	pou3f1 (ENSLBEG00000008388) #35
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Perciformes	ANCESTRAL SPECIES	3	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00530000068429	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Lumpfish	MODERN SPECIES	7	ppp1r8b (ENSCLMG00005006875)	THEMIS2 (ENSCLMG00005006876)	rpa2 (ENSCLMG00005006877) #7	smpdl3b (ENSCLMG00005006878) #8	mecr (ENSCLMG00005006881) #9	LIN28A (ENSCLMG00005007018) #10	MANEAL (ENSCLMG00005007019) #11	yrdc (ENSCLMG00005007021) #12	mtf1 (ENSCLMG00005007022) #13	INPP5B (ENSCLMG00005007032) #14	ZC3H12A (ENSCLMG00005008781) #17	GRIK3 (ENSCLMG00005008787) #18	csf3r (ENSCLMG00005009144) #19	mrps15 (ENSCLMG00005009146) #20	ENSCLMG00005009147 #21	OSCP1 (ENSCLMG00005009149) #22	STK40 (ENSCLMG00005009160) #23	eva1ba (ENSCLMG00005009161) #24	sh3d21 (ENSCLMG00005009162) #25	THRAP3 (ENSCLMG00005009163) #26	MAP7D1 (ENSCLMG00005009165) #27	MAP3K6 (ENSCLMG00005009166) #28	snip1 (ENSCLMG00005009356)	dnali1 (ENSCLMG00005009357) #30	gnl2 (ENSCLMG00005009359) #31	rspo1 (ENSCLMG00005009363) #32	FHL3 (ENSCLMG00005009368) #33	utp11 (ENSCLMG00005009369) #34	pou3f1 (ENSCLMG00005009370) #35	rragca (ENSCLMG00005009371) #36	ENSCLMG00005009372 #37
Stickleback	MODERN SPECIES	19	rpa2 (ENSGACG00000013909) #7	smpdl3b (ENSGACG00000013903) #8	mecr (ENSGACG00000013897) #9	LIN28A (ENSGACG00000013893) #10	MANEAL (ENSGACG00000013887) #11	ENSGACG00000013885	yrdc (ENSGACG00000013878) #12	mtf1 (ENSGACG00000013875) #13	INPP5B (ENSGACG00000013866) #14	ENSGACG00000013863 #15	ZC3H12A (ENSGACG00000013859) #17	GRIK3 (ENSGACG00000013802) #18	ENSGACG00000013798	csf3r (ENSGACG00000013795) #19	mrps15 (ENSGACG00000013792) #20	OSCP1 (ENSGACG00000013774) #22	STK40 (ENSGACG00000013752) #23	eva1ba (ENSGACG00000013751) #24	sh3d21 (ENSGACG00000013749) #25	THRAP3 (ENSGACG00000013745) #26	ENSGACG00000013740 #27	ENSGACG00000013737 #27	MAP3K6 (ENSGACG00000013722) #28	snip1 (ENSGACG00000013718)	dnali1 (ENSGACG00000013717) #30	gnl2 (ENSGACG00000013692) #31	rspo1 (ENSGACG00000013691) #32	FHL3 (ENSGACG00000013685) #33	utp11 (ENSGACG00000013680) #34	pou3f1 (ENSGACG00000013679) #35	rragca (ENSGACG00000013678) #36
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000156115.d	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Pike perch	MODERN SPECIES	116	rpa2 (ENSSLUG00000021519) #7	smpdl3b (ENSSLUG00000021530) #8	mecr (ENSSLUG00000021568) #9	LIN28A (ENSSLUG00000021573) #10	MANEAL (ENSSLUG00000021577) #11	yrdc (ENSSLUG00000021583) #12	mtf1 (ENSSLUG00000021588) #13	INPP5B (ENSSLUG00000021701) #14	ENSSLUG00000023188	ZC3H12A (ENSSLUG00000023191) #17	ENSSLUG00000023196	GRIK3 (ENSSLUG00000023219) #18	csf3r (ENSSLUG00000023341) #19	mrps15 (ENSSLUG00000023350) #20	ENSSLUG00000002857 #21	OSCP1 (ENSSLUG00000002865) #22	STK40 (ENSSLUG00000002877) #23	eva1ba (ENSSLUG00000002889) #24	sh3d21 (ENSSLUG00000002896) #25	THRAP3 (ENSSLUG00000002906) #26	MAP7D1 (ENSSLUG00000002922) #27	MAP3K6 (ENSSLUG00000003332) #28	snip1 (ENSSLUG00000005225)	dnali1 (ENSSLUG00000005235) #30
Channel bull blenny	MODERN SPECIES	7	ppp1r8b (ENSCGOG00000011975)	THEMIS2 (ENSCGOG00000011979)	rpa2 (ENSCGOG00000011996) #7	smpdl3b (ENSCGOG00000012051) #8	mecr (ENSCGOG00000012059) #9	LIN28A (ENSCGOG00000012118) #10	MANEAL (ENSCGOG00000012121) #11	yrdc (ENSCGOG00000012124) #12	mtf1 (ENSCGOG00000012126) #13	INPP5B (ENSCGOG00000012194) #14	ZC3H12A (ENSCGOG00000013293) #17	GRIK3 (ENSCGOG00000013322) #18	csf3r (ENSCGOG00000014334) #19	mrps15 (ENSCGOG00000014339) #20	ENSCGOG00000014342 #21	OSCP1 (ENSCGOG00000014351) #22	STK40 (ENSCGOG00000014493) #23	eva1ba (ENSCGOG00000014536) #24	ENSCGOG00000014538	ENSCGOG00000014542 #26	MAP3K6 (ENSCGOG00000014586) #28	SNIP1 (ENSCGOG00000015239) #29	dnali1 (ENSCGOG00000015240) #30	gnl2 (ENSCGOG00000015253) #31	rspo1 (ENSCGOG00000015715) #32	FHL3 (ENSCGOG00000015722) #33	utp11 (ENSCGOG00000015727) #34	pou3f1 (ENSCGOG00000015755) #35	ENSCGOG00000015756	rragca (ENSCGOG00000015760) #36	ENSCGOG00000015842 #37
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000156115.d	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a	ENSGT00940000159442
European seabass	MODERN SPECIES	6	ENSDLAG00005030953	THEMIS2 (ENSDLAG00005013244)	ENSDLAG00005013211 #7	smpdl3b (ENSDLAG00005013189) #8	ENSDLAG00005013081 #9	ENSDLAG00005034052 #10	yrdc (ENSDLAG00005013053) #12	MANEAL (ENSDLAG00005027752) #11	mtf1 (ENSDLAG00005012917) #13	INPP5B (ENSDLAG00005011892) #14	ENSDLAG00005032500 #15	ZC3H12A (ENSDLAG00005011869) #17	GRIK3 (ENSDLAG00005009845) #18	csf3r (ENSDLAG00005009735) #19	mrps15 (ENSDLAG00005030986) #20	OSCP1 (ENSDLAG00005009654) #22	STK40 (ENSDLAG00005009633) #23	eva1ba (ENSDLAG00005029823) #24	sh3d21 (ENSDLAG00005009583) #25	THRAP3 (ENSDLAG00005009555) #26	MAP7D1 (ENSDLAG00005009499) #27	ENSDLAG00005008475 #28	dnali1 (ENSDLAG00005034656) #30	gnl2 (ENSDLAG00005007540) #31	rspo1 (ENSDLAG00005007510) #32	FHL3 (ENSDLAG00005007500) #33	utp11 (ENSDLAG00005007490) #34	pou3f1 (ENSDLAG00005029296) #35	rragca (ENSDLAG00005007481) #36	ENSDLAG00005029266 #37	GJA9 (ENSDLAG00005007475)
Large yellow croaker	MODERN SPECIES	484	ppp1r8b (ENSLCRG00005012053)	rpa2 (ENSLCRG00005012054) #7	smpdl3b (ENSLCRG00005012055) #8	mecr (ENSLCRG00005012057) #9	LIN28A (ENSLCRG00005012058) #10	MANEAL (ENSLCRG00005012059) #11	yrdc (ENSLCRG00005002976) #12	mtf1 (ENSLCRG00005003083) #13	INPP5B (ENSLCRG00005003620) #14	ENSLCRG00005005318 #15	ZC3H12A (ENSLCRG00005005327) #17	GRIK3 (ENSLCRG00005005377) #18	csf3r (ENSLCRG00005005672) #19	mrps15 (ENSLCRG00005005702) #20	ENSLCRG00005005712	OSCP1 (ENSLCRG00005005741) #22	STK40 (ENSLCRG00005005869) #23	eva1ba (ENSLCRG00005005900) #24	sh3d21 (ENSLCRG00005005906) #25	THRAP3 (ENSLCRG00005005916) #26	MAP7D1 (ENSLCRG00005005931) #27	ENSLCRG00005006336 #28	snip1 (ENSLCRG00005009965)	dnali1 (ENSLCRG00005009982) #30	gnl2 (ENSLCRG00005010011) #31	rspo1 (ENSLCRG00005010051) #32	FHL3 (ENSLCRG00005010057) #33	utp11 (ENSLCRG00005010070) #34	pou3f1 (ENSLCRG00005010081) #35	rragca (ENSLCRG00005010089) #36	ENSLCRG00005010093
Gilthead seabream	MODERN SPECIES	8	THEMIS2 (ENSSAUG00010017559)	rpa2 (ENSSAUG00010017562) #7	smpdl3b (ENSSAUG00010017563) #8	mecr (ENSSAUG00010017566) #9	LIN28A (ENSSAUG00010017594) #10	MANEAL (ENSSAUG00010017595) #11	yrdc (ENSSAUG00010017597) #12	mtf1 (ENSSAUG00010017599) #13	INPP5B (ENSSAUG00010017637) #14	ENSSAUG00010017943 #15	ZC3H12A (ENSSAUG00010017948) #17	GRIK3 (ENSSAUG00010017988) #18	csf3r (ENSSAUG00010020713) #19	mrps15 (ENSSAUG00010020715) #20	ENSSAUG00010020716 #21	OSCP1 (ENSSAUG00010020717) #22	STK40 (ENSSAUG00010020718) #23	eva1ba (ENSSAUG00010020720) #24	sh3d21 (ENSSAUG00010020721) #25	THRAP3 (ENSSAUG00010020723) #26	MAP7D1 (ENSSAUG00010020726) #27	MAP3K6 (ENSSAUG00010020734) #28	snip1 (ENSSAUG00010015005)	dnali1 (ENSSAUG00010015007) #30	gnl2 (ENSSAUG00010015013) #31	rspo1 (ENSSAUG00010015022) #32	FHL3 (ENSSAUG00010015024) #33	utp11 (ENSSAUG00010015030) #34	pou3f1 (ENSSAUG00010015032) #35	rragca (ENSSAUG00010015034) #36	ENSSAUG00010015039 #37
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915.u #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000204035 #15	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915.u #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Climbing perch	MODERN SPECIES	7	ENSATEG00000010326	THEMIS2 (ENSATEG00000010317)	ENSATEG00000010293 #7	smpdl3b (ENSATEG00000028395) #8	ENSATEG00000010252 #9	ENSATEG00000010132 #10	MANEAL (ENSATEG00000010095) #11	yrdc (ENSATEG00000026326) #12	mtf1 (ENSATEG00000025917) #13	INPP5B (ENSATEG00000010044) #14	ZC3H12A (ENSATEG00000009946) #17	GRIK3 (ENSATEG00000009899) #18	csf3r (ENSATEG00000009872) #19	mrps15 (ENSATEG00000009826) #20	ENSATEG00000009806 #21	OSCP1 (ENSATEG00000009753) #22	STK40 (ENSATEG00000009695) #23	eva1ba (ENSATEG00000009674) #24	sh3d21 (ENSATEG00000009649) #25	THRAP3 (ENSATEG00000009618) #26	ENSATEG00000009579	ENSATEG00000009403 #28	dnali1 (ENSATEG00000009355) #30	gnl2 (ENSATEG00000009311) #31	rspo1 (ENSATEG00000009287) #32	FHL3 (ENSATEG00000009266) #33	utp11 (ENSATEG00000009240) #34	rragca (ENSATEG00000029155) #36	ENSATEG00000009198 #37	GJA9 (ENSATEG00000009189)	rhbdl2 (ENSATEG00000009166)
Siamese fighting fish	MODERN SPECIES	7	rpa2 (ENSBSLG00000023095) #7	smpdl3b (ENSBSLG00000023073) #8	mecr (ENSBSLG00000023034) #9	LIN28A (ENSBSLG00000023022) #10	MANEAL (ENSBSLG00000023019) #11	yrdc (ENSBSLG00000022987) #12	mtf1 (ENSBSLG00000022933) #13	INPP5B (ENSBSLG00000022431) #14	ENSBSLG00000022271 #15	ZC3H12A (ENSBSLG00000022267) #17	ENSBSLG00000022266	GRIK3 (ENSBSLG00000022127) #18	csf3r (ENSBSLG00000022045) #19	mrps15 (ENSBSLG00000022038) #20	ENSBSLG00000022016	OSCP1 (ENSBSLG00000022030) #22	STK40 (ENSBSLG00000021978) #23	eva1ba (ENSBSLG00000021956) #24	sh3d21 (ENSBSLG00000021927) #25	THRAP3 (ENSBSLG00000021912) #26	MAP7D1 (ENSBSLG00000021885) #27	ENSBSLG00000021441 #28	SNIP1 (ENSBSLG00000021403) #29	dnali1 (ENSBSLG00000021397) #30	gnl2 (ENSBSLG00000021296) #31	rspo1 (ENSBSLG00000021269) #32	FHL3 (ENSBSLG00000021242) #33	utp11 (ENSBSLG00000021215) #34	rragca (ENSBSLG00000021174) #36	MYCBP (ENSBSLG00000021126) #37	GJA9 (ENSBSLG00000021090)
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000007169	THEMIS2 (ENSMAMG00000007194)	ENSMAMG00000007223 #7	smpdl3b (ENSMAMG00000007230) #8	ENSMAMG00000027671 #9	ENSMAMG00000007271 #10	MANEAL (ENSMAMG00000007300) #11	yrdc (ENSMAMG00000028078) #12	mtf1 (ENSMAMG00000007324) #13	INPP5B (ENSMAMG00000007345) #14	ZC3H12A (ENSMAMG00000007494) #17	GRIK3 (ENSMAMG00000007505) #18	csf3r (ENSMAMG00000007544) #19	mrps15 (ENSMAMG00000007572) #20	ENSMAMG00000007593	OSCP1 (ENSMAMG00000007603) #22	STK40 (ENSMAMG00000007611) #23	eva1ba (ENSMAMG00000007649) #24	sh3d21 (ENSMAMG00000007666) #25	THRAP3 (ENSMAMG00000007707) #26	MAP7D1 (ENSMAMG00000007741) #27	ENSMAMG00000007781 #28	dnali1 (ENSMAMG00000027064) #30	gnl2 (ENSMAMG00000007823) #31	rspo1 (ENSMAMG00000007882) #32	FHL3 (ENSMAMG00000007894) #33	utp11 (ENSMAMG00000007927) #34	pou3f1 (ENSMAMG00000007950) #35	rragca (ENSMAMG00000007964) #36	ENSMAMG00000008023 #37	rhbdl2 (ENSMAMG00000026530)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Seriola	ANCESTRAL SPECIES	48	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00940000166129 #21	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37
Greater amberjack	MODERN SPECIES	154	rpa2 (ENSSDUG00000009641) #7	smpdl3b (ENSSDUG00000009653) #8	mecr (ENSSDUG00000009675) #9	LIN28A (ENSSDUG00000009722) #10	ENSSDUG00000009740 #11	MANEAL (ENSSDUG00000009753) #11	yrdc (ENSSDUG00000009775) #12	mtf1 (ENSSDUG00000009784) #13	INPP5B (ENSSDUG00000009812) #14	ENSSDUG00000009859 #16	ZC3H12A (ENSSDUG00000009879) #17	GRIK3 (ENSSDUG00000009891) #18	csf3r (ENSSDUG00000009924) #19	mrps15 (ENSSDUG00000009946) #20	ENSSDUG00000009969 #21	OSCP1 (ENSSDUG00000009984) #22	STK40 (ENSSDUG00000010024) #23	eva1ba (ENSSDUG00000010078) #24	sh3d21 (ENSSDUG00000010098) #25	THRAP3 (ENSSDUG00000010132) #26	MAP7D1 (ENSSDUG00000010208) #27	MAP3K6 (ENSSDUG00000010287) #28	SNIP1 (ENSSDUG00000010325) #29	dnali1 (ENSSDUG00000010345) #30	gnl2 (ENSSDUG00000010382) #31	rspo1 (ENSSDUG00000010472) #32	FHL3 (ENSSDUG00000010483) #33	utp11 (ENSSDUG00000010501) #34	pou3f1 (ENSSDUG00000010532) #35	rragca (ENSSDUG00000010543) #36	ENSSDUG00000010570 #37
Yellowtail amberjack	MODERN SPECIES	2938											ZC3H12A (ENSSLDG00000003826) #17	GRIK3 (ENSSLDG00000003728) #18	csf3r (ENSSLDG00000003702) #19	mrps15 (ENSSLDG00000003653) #20	ENSSLDG00000003618 #21	OSCP1 (ENSSLDG00000003542) #22	STK40 (ENSSLDG00000003439) #23	eva1ba (ENSSLDG00000003421) #24	sh3d21 (ENSSLDG00000003350) #25	THRAP3 (ENSSLDG00000003306) #26	MAP3K6 (ENSSLDG00000003273) #28	SNIP1 (ENSSLDG00000003260) #29	dnali1 (ENSSLDG00000003211) #30	gnl2 (ENSSLDG00000003122) #31	rspo1 (ENSSLDG00000003101) #32	FHL3 (ENSSLDG00000003064) #33	utp11 (ENSSLDG00000002990) #34	pou3f1 (ENSSLDG00000002965) #35	rragca (ENSSLDG00000002931) #36	ENSSLDG00000002881 #37	GJA9 (ENSSLDG00000002865)
Barramundi perch	MODERN SPECIES	104													CSF3R (ENSLCAG00010003642) #19	mrps15 (ENSLCAG00010003634) #20	ENSLCAG00010003627 #21	OSCP1 (ENSLCAG00010003615) #22	STK40 (ENSLCAG00010003605) #23	eva1ba (ENSLCAG00010003602) #24	sh3d21 (ENSLCAG00010003598) #25	THRAP3 (ENSLCAG00010003595) #26	MAP7D1 (ENSLCAG00010003586) #27	ENSLCAG00010003538 #28	snip1 (ENSLCAG00010003515)	dnali1 (ENSLCAG00010003510) #30	gnl2 (ENSLCAG00010003490) #31	rspo1 (ENSLCAG00010003470) #32	FHL3 (ENSLCAG00010003463) #33	utp11 (ENSLCAG00010003455) #34	pou3f1 (ENSLCAG00010003450) #35	rragca (ENSLCAG00010003445) #36	ENSLCAG00010003436 #37
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00940000178211	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a
Turbot	MODERN SPECIES		ENSSMAG00000005358	THEMIS2 (ENSSMAG00000005346)	ENSSMAG00000005300 #7	smpdl3b (ENSSMAG00000005250) #8	ENSSMAG00000005269 #9	ENSSMAG00000005221 #10	MANEAL (ENSSMAG00000005209) #11	yrdc (ENSSMAG00000005195) #12	mtf1 (ENSSMAG00000005172) #13	INPP5B (ENSSMAG00000005147) #14	ZC3H12A (ENSSMAG00000005140) #17	GRIK3 (ENSSMAG00000005100) #18	csf3r (ENSSMAG00000003925) #19	mrps15 (ENSSMAG00000003899) #20	ENSSMAG00000003843	OSCP1 (ENSSMAG00000003827) #22	STK40 (ENSSMAG00000003802) #23	eva1ba (ENSSMAG00000023907) #24	sh3d21 (ENSSMAG00000003747) #25	THRAP3 (ENSSMAG00000003703) #26	MAP7D1 (ENSSMAG00000003648) #27	ENSSMAG00000003583 #28	SNIP1 (ENSSMAG00000003570) #29	dnali1 (ENSSMAG00000003563) #30	gnl2 (ENSSMAG00000003472) #31	rspo1 (ENSSMAG00000003444) #32	FHL3 (ENSSMAG00000027104) #33	utp11 (ENSSMAG00000003346) #34	ENSSMAG00000035984	pou3f1 (ENSSMAG00000003341) #35	rragca (ENSSMAG00000003327) #36
Tongue sole	MODERN SPECIES	4	smpdl3b (ENSCSEG00000019113) #8	mecr (ENSCSEG00000019099) #9	LIN28A (ENSCSEG00000019091) #10	MANEAL (ENSCSEG00000019083) #11	yrdc (ENSCSEG00000019075) #12	mtf1 (ENSCSEG00000019069) #13	INPP5B (ENSCSEG00000019058) #14	ENSCSEG00000019048	ZC3H12A (ENSCSEG00000019043) #17	ENSCSEG00000019040	ENSCSEG00000019035	GRIK3 (ENSCSEG00000019032) #18	csf3r (ENSCSEG00000019010) #19	mrps15 (ENSCSEG00000019008) #20	ENSCSEG00000019006	OSCP1 (ENSCSEG00000019001) #22	STK40 (ENSCSEG00000018992) #23	eva1ba (ENSCSEG00000018985) #24	prpf31 (ENSCSEG00000018961)	ENSCSEG00000018956	leng1 (ENSCSEG00000018955)	ENSCSEG00000018948	mboat7 (ENSCSEG00000018924)	rps9 (ENSCSEG00000018918)	rbfox1l (ENSCSEG00000018898)	leng8 (ENSCSEG00000018887)	cdc42ep5 (ENSCSEG00000018881)	grwd1 (ENSCSEG00000018851)	flcn (ENSCSEG00000018835)	CACNG8 (ENSCSEG00000018830)	CACNG7 (ENSCSEG00000018828)
Tiger tail seahorse	MODERN SPECIES	114	ENSHCOG00000006760	ethe1 (ENSHCOG00000006738)	ENSHCOG00000006719	rpa2 (ENSHCOG00000006700) #7	smpdl3b (ENSHCOG00000006676) #8	mecr (ENSHCOG00000006647) #9	LIN28A (ENSHCOG00000006614) #10	ENSHCOG00000006606	yrdc (ENSHCOG00000006598) #12	mtf1 (ENSHCOG00000006581) #13	INPP5B (ENSHCOG00000006376) #14	GRIK3 (ENSHCOG00000006208) #18	csf3r (ENSHCOG00000006170) #19	mrps15 (ENSHCOG00000006158) #20	ENSHCOG00000006136	OSCP1 (ENSHCOG00000006119) #22	STK40 (ENSHCOG00000006048) #23	eva1ba (ENSHCOG00000006030) #24
Pinecone sodierfish	MODERN SPECIES	7	THEMIS2 (ENSMMDG00005013243)	rpa2 (ENSMMDG00005013248) #7	smpdl3b (ENSMMDG00005013253) #8	mecr (ENSMMDG00005013260) #9	LIN28A (ENSMMDG00005013379) #10	MANEAL (ENSMMDG00005013381) #11	yrdc (ENSMMDG00005013382) #12	mtf1 (ENSMMDG00005013384) #13	INPP5B (ENSMMDG00005013409) #14	ZC3H12A (ENSMMDG00005015627) #17	ENSMMDG00005015659	GRIK3 (ENSMMDG00005015674) #18	csf3r (ENSMMDG00005015763) #19	mrps15 (ENSMMDG00005015781) #20	ENSMMDG00005015782	OSCP1 (ENSMMDG00005015784) #22	STK40 (ENSMMDG00005015813) #23	eva1ba (ENSMMDG00005015816) #24	sh3d21 (ENSMMDG00005015819) #25	THRAP3 (ENSMMDG00005015833) #26	MAP7D1 (ENSMMDG00005015855) #27	MAP3K6 (ENSMMDG00005015884) #28	snip1 (ENSMMDG00005017814)	dnali1 (ENSMMDG00005017815) #30	gnl2 (ENSMMDG00005017817) #31	rspo1 (ENSMMDG00005017827) #32	FHL3 (ENSMMDG00005017832) #33	utp11 (ENSMMDG00005017835) #34	pou3f1 (ENSMMDG00005017837) #35	rragca (ENSMMDG00005017838) #36	MYCBP (ENSMMDG00005017840) #37
Cod	MODERN SPECIES	19	GJA9 (ENSGMOG00000028778)	ENSGMOG00000024146 #37	RRAGC (ENSGMOG00000009914) #36	utp11 (ENSGMOG00000006896) #34	FHL3 (ENSGMOG00000011956) #33	rspo1 (ENSGMOG00000033333) #32	gnl2 (ENSGMOG00000004427) #31	ENSGMOG00000004468	ENSGMOG00000004478 #29	ENSGMOG00000004485 #28	ENSGMOG00000023353	GRIK3 (ENSGMOG00000005547) #18	CSF3R (ENSGMOG00000032282) #19	mrps15 (ENSGMOG00000007959) #20	ENSGMOG00000023811	OSCP1 (ENSGMOG00000007938) #22	STK40 (ENSGMOG00000031461) #23	ENSGMOG00000036284	ENSGMOG00000032273	ENSGMOG00000027159	ENSGMOG00000017904	ENSGMOG00000035227	ENSGMOG00000017944	nudt17 (ENSGMOG00000028872)	ENSGMOG00000031692	ENSGMOG00000011376	mtx1a (ENSGMOG00000019539)	thbs3a (ENSGMOG00000019543)	hjv (ENSGMOG00000023468)	ENSGMOG00000025898	ENSGMOG00000015486
Protacanthopterygii	ANCESTRAL SPECIES	50	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291.j #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00940000154063.C.a.a.b	ENSGT00940000156318.b.b	ENSGT01010000223313	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	85							ENSGT00390000015364.b.n #12	ENSGT00940000157291.j.a #13	ENSGT00940000156762.j #14	ENSGT00990000203803.d #16	ENSGT00940000155107.a.a.a.b #17	ENSGT00940000159465.d #18	ENSGT00940000158915.ab.b #19	ENSGT00390000001737.o #20	ENSGT01030000235168.c.b	ENSGT00390000004808.e.a #22	ENSGT00950000182986.b.c #23	ENSGT00940000154096.b.b.b.b.b.a #24	ENSGT00940000160627.l #25	ENSGT00950000183163.a.a.ab.d #26	ENSGT00940000154063.C.a.a.b.j.b	ENSGT00950000182941.a.a.b.e.a.b.f #27	ENSGT00940000159398.c #28	ENSGT00940000156553.h #29	ENSGT00940000179482	ENSGT00810000125524.d #31	ENSGT00940000158871.d #32	ENSGT00950000183028.a.b.a.f #33	ENSGT00390000005813.j #34	ENSGT00940000165372.d #35	ENSGT00950000183031.A.a.a.a.b #36
Huchen	MODERN SPECIES	516														mrps15 (ENSHHUG00000023165) #20	ENSHHUG00000023196	OSCP1 (ENSHHUG00000023235) #22	STK40 (ENSHHUG00000023245) #23	eva1ba (ENSHHUG00000023251) #24	sh3d21 (ENSHHUG00000023275) #25	THRAP3 (ENSHHUG00000023283) #26	ENSHHUG00000023305	MAP7D1 (ENSHHUG00000023310) #27	MAP3K6 (ENSHHUG00000023393) #28	SNIP1 (ENSHHUG00000023456) #29	ENSHHUG00000023458	gnl2 (ENSHHUG00000023471) #31	rspo1 (ENSHHUG00000023657) #32	FHL3 (ENSHHUG00000023662) #33	utp11 (ENSHHUG00000023669) #34	pou3f1 (ENSHHUG00000023677) #35
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000156115.d.a	ENSGT00530000063770.c.a.g.b	ENSGT00390000010045.s.a #7	ENSGT00940000156592.`b.a #9	ENSGT00940000153295.a.a.d #10	ENSGT00390000016054.b.i.e.b #11	ENSGT00390000015364.b.n #12	ENSGT00940000157291.j.a #13	ENSGT00940000156762.j #14	ENSGT00990000203803.d #16	ENSGT00940000155107.a.a.a.b #17	ENSGT00940000159465.d #18	ENSGT00940000158915.ab.b #19	ENSGT00390000001737.o #20	ENSGT01030000235168.c.b	ENSGT00390000004808.e.a #22	ENSGT00950000182986.b.c #23	ENSGT00940000154096.b.b.b.b.b.a #24	ENSGT00990000211290.A	ENSGT00940000160627.l #25	ENSGT00950000183163.a.a.ab.d #26	ENSGT00940000154063.C.a.a.b.j.b	ENSGT00950000182941.a.a.b.e.a.b.f #27	ENSGT00940000159398.c #28	ENSGT00940000156553.h #29	ENSGT00940000179482	ENSGT00810000125524.d #31	ENSGT00940000158871.d #32	ENSGT00950000183028.a.b.a.f #33	ENSGT00390000005813.j #34	ENSGT00940000165372.d #35
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000161527.w.b	ENSGT00940000156115.d.a	ENSGT00530000063770.c.a.g.b	ENSGT00390000010045.s.a #7	ENSGT00940000156592.`b.a #9	ENSGT00940000153295.a.a.d #10	ENSGT00390000016054.b.i.e.b #11	ENSGT00990000213494	ENSGT00940000157291.j.a #13	ENSGT00940000156762.j #14	ENSGT00990000203803.d #16	ENSGT00940000155107.a.a.a.b #17	ENSGT00940000159465.c.b.b #18	ENSGT00940000158915.ab.b #19	ENSGT00390000001737.o #20	ENSGT00390000004808.e.a #22	ENSGT00950000182986.b.c #23	ENSGT00940000154096.b.b.b.b.b.a #24	ENSGT00990000211290.A	ENSGT00940000160627.l #25	ENSGT00950000183163.a.a.ab.d #26	ENSGT00940000154063.C.a.a.b.j.b.b	ENSGT00950000182941.a.a.b.e.a.b.f #27	ENSGT00940000159398.c #28	ENSGT00940000156553.h #29	ENSGT00810000125524.d #31	ENSGT00940000158871.d #32	ENSGT00950000183028.a.b.a.f #33	ENSGT00390000005813.j #34	ENSGT00940000165372.d #35	ENSGT00950000183031.A.a.a.a.b #36
River trout	MODERN SPECIES	22	ENSSTUG00000006805	ppp1r8b (ENSSTUG00000006808)	ENSSTUG00000006818	rpa2 (ENSSTUG00000006821) #7	mecr (ENSSTUG00000006842) #9	LIN28A (ENSSTUG00000006944) #10	MANEAL (ENSSTUG00000006949) #11	ENSSTUG00000006966	mtf1 (ENSSTUG00000007007) #13	INPP5B (ENSSTUG00000007064) #14	ENSSTUG00000008498 #16	ZC3H12A (ENSSTUG00000008510) #17	GRIK3 (ENSSTUG00000008608) #18	ENSSTUG00000010809	mrps15 (ENSSTUG00000028606) #20	OSCP1 (ENSSTUG00000028650) #22	STK40 (ENSSTUG00000028762) #23	eva1ba (ENSSTUG00000028783) #24	sh3d21 (ENSSTUG00000028799) #25	THRAP3 (ENSSTUG00000028821) #26	ENSSTUG00000028878	ENSSTUG00000028899	fam177a1 (ENSSTUG00000028906)	fam177a1 (ENSSTUG00000028915)	ENSSTUG00000028926	MAP7D1 (ENSSTUG00000028932) #27	ENSSTUG00000029010 #28	SNIP1 (ENSSTUG00000029312) #29	gnl2 (ENSSTUG00000029330) #31	rspo1 (ENSSTUG00000029480) #32	FHL3 (ENSSTUG00000029489) #33
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000052132	ENSSSAG00000070308	ENSSSAG00000088862 #7	ENSSSAG00000070382 #11	ENSSSAG00000070321 #9	ENSSSAG00000103283 #10	ENSSSAG00000070389	mtf1 (ENSSSAG00000070392) #13	ENSSSAG00000070412 #14	ENSSSAG00000121662 #16	ZC3H12A (ENSSSAG00000070519) #17	ENSSSAG00000091521	GRIK3 (ENSSSAG00000070593) #18	csf3r (ENSSSAG00000072535) #19	mrps15 (ENSSSAG00000037592) #20	OSCP1 (ENSSSAG00000038140) #22	STK40 (ENSSSAG00000039079) #23	CA078 (ENSSSAG00000039398) #24	ENSSSAG00000100766	sh3d21 (ENSSSAG00000041288) #25	THRAP3 (ENSSSAG00000039533) #26	ENSSSAG00000114956	ENSSSAG00000039686	ENSSSAG00000010394	MAP7D1 (ENSSSAG00000041522) #27	ENSSSAG00000041598 #28	ENSSSAG00000041874 #29	dnali1 (ENSSSAG00000041885) #30	gnl2 (ENSSSAG00000041915)	rspo1 (ENSSSAG00000112303) #32	FHL3 (ENSSSAG00000042046) #33
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00940000156115.d.a	ENSGT00530000063770.c.a.g.b	ENSGT00390000010045.s.a #7	ENSGT00940000156592.`b.a #9	ENSGT00940000153295.a.a.d #10	ENSGT00390000016054.b.i.e.b #11	ENSGT00390000015364.b.n #12	ENSGT00940000157291.j.a #13	ENSGT00940000156762.j #14	ENSGT00990000203803.d #16	ENSGT00940000155107.a.a.a.b #17	ENSGT00940000159465.d #18	ENSGT00940000158915.ab.b #19	ENSGT00390000001737.o #20	ENSGT01030000235168.c.b	ENSGT00390000004808.e.a #22	ENSGT00950000182986.b.c #23	ENSGT00940000154096.b.b.b.b.b.a #24	ENSGT00990000211290.A	ENSGT00940000160627.l #25	ENSGT00950000183163.a.a.ab.d #26	ENSGT00940000154063.C.a.a.b.j.b.c	ENSGT00940000154063.C.a.a.b.j.b.d	ENSGT00950000182941.a.a.b.e.a.b.f #27	ENSGT00940000159398.c #28	ENSGT00940000156553.h #29	ENSGT00940000179482	ENSGT00810000125524.d #31	ENSGT00940000158871.d #32	ENSGT00950000183028.a.b.a.f #33	ENSGT00390000005813.j #34
Oncorhynchus_a	ANCESTRAL SPECIES	127	ENSGT00940000161527.w.b	ENSGT00940000156115.d.a	ENSGT00530000063770.c.a.g.b	ENSGT00940000156592.`b.a #9	ENSGT00940000153295.a.a.d #10	ENSGT00390000016054.b.i.e.b #11	ENSGT00390000015364.b.n #12	ENSGT00940000157291.j.a #13	ENSGT00940000156762.j #14	ENSGT00990000203803.d #16	ENSGT00940000155107.a.a.a.b #17	ENSGT00940000159465.d #18	ENSGT00940000158915.ab.b #19	ENSGT00390000001737.o #20	ENSGT01030000235168.c.b	ENSGT00390000004808.e.a #22	ENSGT00950000182986.b.c #23	ENSGT00940000154096.b.b.b.b.b.a #24	ENSGT00990000211290.A	ENSGT00940000160627.l #25	ENSGT00950000183163.a.a.ab.d #26	ENSGT00940000154063.C.a.a.b.j.b.c	ENSGT00940000154063.C.a.a.b.j.b.d	ENSGT00950000182941.a.a.b.e.a.b.f #27	ENSGT00940000159398.c #28	ENSGT00940000156553.h #29	ENSGT00940000179482	ENSGT00810000125524.d #31	ENSGT00940000158871.d #32	ENSGT00950000183028.a.b.a.f #33	ENSGT00390000005813.j #34
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2914	cyp4t8 (ENSOTSG00005026058)	ppp1r8b (ENSOTSG00005026062)	ENSOTSG00005026065	mecr (ENSOTSG00005026069) #9	LIN28A (ENSOTSG00005026076) #10	MANEAL (ENSOTSG00005026078) #11	yrdc (ENSOTSG00005026084) #12	mtf1 (ENSOTSG00005026183) #13	INPP5B (ENSOTSG00005026202) #14	ENSOTSG00005026882 #16	ZC3H12A (ENSOTSG00005026883) #17	GRIK3 (ENSOTSG00005026887) #18	ENSOTSG00005030098 #19	mrps15 (ENSOTSG00005030100) #20	ENSOTSG00005030101	OSCP1 (ENSOTSG00005030103) #22	STK40 (ENSOTSG00005030106) #23	eva1ba (ENSOTSG00005030108) #24	ENSOTSG00005030110	sh3d21 (ENSOTSG00005030111) #25	THRAP3 (ENSOTSG00005030112) #26	ENSOTSG00005030117	ENSOTSG00005030197	MAP7D1 (ENSOTSG00005030200) #27	ENSOTSG00005030207 #28	SNIP1 (ENSOTSG00005030257) #29	ENSOTSG00005030258	gnl2 (ENSOTSG00005030301) #31	rspo1 (ENSOTSG00005030309) #32	FHL3 (ENSOTSG00005030310) #33	utp11 (ENSOTSG00005030311) #34
Chinook salmon	MODERN SPECIES	15	med18 (ENSOTSG00005006815)	cyp4t8 (ENSOTSG00005006814)	ppp1r8b (ENSOTSG00005006813)	ENSOTSG00005006812	mecr (ENSOTSG00005006803) #9	LIN28A (ENSOTSG00005006802) #10	MANEAL (ENSOTSG00005006800) #11	yrdc (ENSOTSG00005006745) #12	mtf1 (ENSOTSG00005006701) #13	INPP5B (ENSOTSG00005004531) #14	ENSOTSG00005004527 #16	ZC3H12A (ENSOTSG00005004525) #17	GRIK3 (ENSOTSG00005003513) #18	mrps15 (ENSOTSG00005003503) #20	ENSOTSG00005003502	OSCP1 (ENSOTSG00005003499) #22	STK40 (ENSOTSG00005003497) #23	eva1ba (ENSOTSG00005003495) #24	ENSOTSG00005003493	sh3d21 (ENSOTSG00005003486) #25	THRAP3 (ENSOTSG00005003479) #26	ENSOTSG00005003401	ENSOTSG00005003397	MAP7D1 (ENSOTSG00005003383) #27	ENSOTSG00005003369 #28	SNIP1 (ENSOTSG00005003366) #29	ENSOTSG00005003337	gnl2 (ENSOTSG00005003221) #31	rspo1 (ENSOTSG00005003214) #32	ENSOTSG00005003212	FHL3 (ENSOTSG00005003210) #33
Coho salmon	MODERN SPECIES	4	cyp4t8 (ENSOKIG00005007747)	ppp1r8b (ENSOKIG00005008025)	THEMIS2 (ENSOKIG00005008040)	mecr (ENSOKIG00005008069) #9	LIN28A (ENSOKIG00005008226) #10	MANEAL (ENSOKIG00005008244) #11	yrdc (ENSOKIG00005008251) #12	mtf1 (ENSOKIG00005008291) #13	INPP5B (ENSOKIG00005008484) #14	ENSOKIG00005010146 #16	ZC3H12A (ENSOKIG00005010157) #17	GRIK3 (ENSOKIG00005010276) #18	ENSOKIG00005011934 #19	mrps15 (ENSOKIG00005012017) #20	ENSOKIG00005012040	OSCP1 (ENSOKIG00005012056) #22	ENSOKIG00005012097	ENSOKIG00005012100	STK40 (ENSOKIG00005012106) #23	eva1ba (ENSOKIG00005012126) #24	ENSOKIG00005012134	sh3d21 (ENSOKIG00005012171) #25	THRAP3 (ENSOKIG00005012188) #26	ENSOKIG00005012207	MAP7D1 (ENSOKIG00005012228) #27	ENSOKIG00005012292	MAP3K6 (ENSOKIG00005012344) #28	SNIP1 (ENSOKIG00005012923) #29	ENSOKIG00005012932	gnl2 (ENSOKIG00005012985) #31	rspo1 (ENSOKIG00005013187) #32
Salmoninae	ANCESTRAL SPECIES	85	ENSGT00940000161527.w.a	ENSGT00940000156115.d.b	ENSGT00530000063770.c.a.g.a	ENSGT00390000010045.s.b #7	ENSGT00950000183182.a.a #8	ENSGT00940000153295.a.a.c #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b.m #12	ENSGT00940000157291.j.b #13	ENSGT00940000156762.i #14	ENSGT00990000203803.c #16	ENSGT00940000155107.a.a.a.a #17	ENSGT00940000159465.c.a #18	ENSGT00940000158915.ab.a #19	ENSGT00390000001737.p #20	ENSGT00390000004808.e.b #22	ENSGT00950000182986.b.d #23	ENSGT00940000154096.b.b.b.b.b.b #24	ENSGT00940000160627.k #25	ENSGT00950000183163.a.a.ab.c #26	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000182941.a.a.b.e.a.b.e #27	ENSGT00940000159398.d #28	ENSGT00940000156553.g #29	ENSGT00390000003012 #30	ENSGT00810000125524.c #31	ENSGT00940000158871.c #32	ENSGT00950000183028.a.b.a.e #33	ENSGT00390000005813.i #34	ENSGT00940000165372.c #35	ENSGT00950000183031.A.a.a.a.a #36
Salmoninae_a	ANCESTRAL SPECIES	93	ENSGT00530000063770.c.a.g.a	ENSGT00390000010045.s.b #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592.`b.b #9	ENSGT00940000153295.a.a.c #10	ENSGT00390000016054.b.i.e.a #11	ENSGT00390000015364.b.m #12	ENSGT00940000157291.j.b #13	ENSGT00940000156762.i #14	ENSGT00990000203803.c #16	ENSGT00940000155107.a.a.a.a #17	ENSGT00940000159465.c.a #18	ENSGT00940000158915.ab.a #19	ENSGT00390000001737.p #20	ENSGT01030000235168.c.a	ENSGT00390000004808.e.b #22	ENSGT00950000182986.b.d #23	ENSGT00940000154096.b.b.b.b.b.b #24	ENSGT00990000211290.B	ENSGT00940000160627.k #25	ENSGT00950000183163.a.a.ab.c #26	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000182941.a.a.b.e.a.b.e #27	ENSGT00940000159398.d #28	ENSGT00940000156553.g #29	ENSGT00390000003012 #30	ENSGT00810000125524.c #31	ENSGT00940000158871.c #32	ENSGT00950000183028.a.b.a.e #33	ENSGT00390000005813.i #34	ENSGT00940000165372.c #35
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00530000063770.c.a.g.a	ENSGT00390000010045.s.b #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592.`b.b #9	ENSGT00940000153295.a.a.c #10	ENSGT00390000016054.b.i.e.a #11	ENSGT00390000015364.b.m #12	ENSGT00940000157291.j.b #13	ENSGT00940000156762.i #14	ENSGT00990000203803.c #16	ENSGT00940000155107.a.a.a.a #17	ENSGT00940000159465.c.a #18	ENSGT00940000158915.ab.a #19	ENSGT00390000001737.p #20	ENSGT01030000235168.c.a	ENSGT00390000004808.e.b #22	ENSGT00950000182986.b.d #23	ENSGT00940000154096.b.b.b.b.b.b #24	ENSGT00990000211290.B	ENSGT00940000160627.k #25	ENSGT00950000183163.a.a.ab.c #26	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000182941.a.a.b.e.a.b.e #27	ENSGT00940000159398.d #28	ENSGT00940000156553.g #29	ENSGT00390000003012.l.a #30	ENSGT00810000125524.c #31	ENSGT00940000158871.c #32	ENSGT00950000183028.a.b.a.e #33	ENSGT00390000005813.i #34	ENSGT00940000165372.c #35
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00530000063770.c.a.g.a	ENSGT00390000010045.s.b #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592.`b.b #9	ENSGT00940000153295.a.a.c #10	ENSGT00390000016054.b.i.e.a #11	ENSGT00390000015364.b.m #12	ENSGT00940000157291.j.b #13	ENSGT00940000156762.i #14	ENSGT00990000203803.c #16	ENSGT00940000155107.a.a.a.a #17	ENSGT00940000159465.c.a #18	ENSGT00940000158915.ab.a #19	ENSGT00390000001737.p #20	ENSGT01030000235168.c.a	ENSGT00390000004808.e.b #22	ENSGT00950000182986.b.d #23	ENSGT00940000154096.b.b.b.b.b.b #24	ENSGT00990000211290.B	ENSGT00940000160627.k #25	ENSGT00950000183163.a.a.ab.c #26	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000182941.a.a.b.e.a.b.e #27	ENSGT00940000159398.d #28	ENSGT00940000156553.g #29	ENSGT00390000003012.l.a #30	ENSGT00810000125524.c #31	ENSGT00940000158871.c #32	ENSGT00950000183028.a.b.a.e #33	ENSGT00390000005813.i #34	ENSGT00940000165372.c #35
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	22	THEMIS2 (ENSOTSG00005007596)	rpa2 (ENSOTSG00005007598) #7	smpdl3b (ENSOTSG00005007602) #8	mecr (ENSOTSG00005007605) #9	LIN28A (ENSOTSG00005007608) #10	MANEAL (ENSOTSG00005007610) #11	yrdc (ENSOTSG00005007612) #12	mtf1 (ENSOTSG00005007615) #13	INPP5B (ENSOTSG00005007623) #14	ENSOTSG00005007863 #16	ZC3H12A (ENSOTSG00005007864) #17	GRIK3 (ENSOTSG00005007874) #18	csf3r (ENSOTSG00005011303) #19	mrps15 (ENSOTSG00005011308) #20	ENSOTSG00005011310	OSCP1 (ENSOTSG00005011313) #22	STK40 (ENSOTSG00005011356) #23	eva1ba (ENSOTSG00005011369) #24	sh3d21 (ENSOTSG00005011372) #25	THRAP3 (ENSOTSG00005011377) #26	ENSOTSG00005011382	MAP7D1 (ENSOTSG00005011384) #27	ENSOTSG00005000717 #28	SNIP1 (ENSOTSG00005002012) #29	dnali1 (ENSOTSG00005002016) #30	gnl2 (ENSOTSG00005002018) #31	rspo1 (ENSOTSG00005002019) #32	FHL3 (ENSOTSG00005002021) #33	utp11 (ENSOTSG00005002023) #34	pou3f1 (ENSOTSG00005002026) #35	mms22l (ENSOTSG00005002033)
Chinook salmon	MODERN SPECIES	2926	THEMIS2 (ENSOTSG00005033099)	rpa2 (ENSOTSG00005033097) #7	smpdl3b (ENSOTSG00005033096) #8	mecr (ENSOTSG00005033094) #9	LIN28A (ENSOTSG00005033093) #10	MANEAL (ENSOTSG00005033092) #11	yrdc (ENSOTSG00005033091) #12	mtf1 (ENSOTSG00005033088) #13	INPP5B (ENSOTSG00005033083) #14	ENSOTSG00005033081 #16	ZC3H12A (ENSOTSG00005033079) #17	GRIK3 (ENSOTSG00005029467) #18	csf3r (ENSOTSG00005029452) #19	ENSOTSG00005029451	mrps15 (ENSOTSG00005029450) #20	OSCP1 (ENSOTSG00005029336) #22	STK40 (ENSOTSG00005029330) #23	eva1ba (ENSOTSG00005029329) #24	sh3d21 (ENSOTSG00005029328) #25	THRAP3 (ENSOTSG00005029326) #26	ENSOTSG00005029324	MAP7D1 (ENSOTSG00005029313) #27	ENSOTSG00005029304 #28	SNIP1 (ENSOTSG00005029299) #29	dnali1 (ENSOTSG00005029295) #30	gnl2 (ENSOTSG00005029292) #31	rspo1 (ENSOTSG00005029290) #32	FHL3 (ENSOTSG00005029287) #33	utp11 (ENSOTSG00005029286) #34	pou3f1 (ENSOTSG00005029284) #35
Chinook salmon	MODERN SPECIES	22	THEMIS2 (ENSOTSG00005000122)	rpa2 (ENSOTSG00005000120) #7	smpdl3b (ENSOTSG00005000116) #8	mecr (ENSOTSG00005000113) #9	LIN28A (ENSOTSG00005000110) #10	MANEAL (ENSOTSG00005000089) #11	yrdc (ENSOTSG00005000054) #12	mtf1 (ENSOTSG00005012824) #13	INPP5B (ENSOTSG00005011544) #14	ENSOTSG00005011536 #16	ZC3H12A (ENSOTSG00005011535) #17	GRIK3 (ENSOTSG00005008615) #18	csf3r (ENSOTSG00005008586) #19	mrps15 (ENSOTSG00005008585) #20	ENSOTSG00005008583	OSCP1 (ENSOTSG00005008539) #22	STK40 (ENSOTSG00005008536) #23	eva1ba (ENSOTSG00005008534) #24	sh3d21 (ENSOTSG00005008530) #25	THRAP3 (ENSOTSG00005008526) #26	ENSOTSG00005008523	MAP7D1 (ENSOTSG00005008519) #27	ENSOTSG00005007960 #28	SNIP1 (ENSOTSG00005007957) #29	dnali1 (ENSOTSG00005007956) #30	gnl2 (ENSOTSG00005007955) #31	rspo1 (ENSOTSG00005007954) #32	FHL3 (ENSOTSG00005007953) #33	utp11 (ENSOTSG00005007952) #34	pou3f1 (ENSOTSG00005007951) #35	ENSOTSG00005007950
Coho salmon	MODERN SPECIES	11	ENSOKIG00005019648	THEMIS2 (ENSOKIG00005019632)	ENSOKIG00005019561 #7	smpdl3b (ENSOKIG00005019551) #8	MECR (ENSOKIG00005019485) #9	LIN28A (ENSOKIG00005019468) #10	MANEAL (ENSOKIG00005019463) #11	yrdc (ENSOKIG00005019460) #12	mtf1 (ENSOKIG00005019448) #13	INPP5B (ENSOKIG00005018928) #14	ENSOKIG00005018888 #16	ZC3H12A (ENSOKIG00005018878) #17	GRIK3 (ENSOKIG00005018849) #18	csf3r (ENSOKIG00005018820) #19	mrps15 (ENSOKIG00005018782) #20	OSCP1 (ENSOKIG00005018695) #22	STK40 (ENSOKIG00005018666) #23	eva1ba (ENSOKIG00005018655) #24	ENSOKIG00005018636	sh3d21 (ENSOKIG00005018614) #25	THRAP3 (ENSOKIG00005018602) #26	ENSOKIG00005018600	MAP7D1 (ENSOKIG00005018595) #27	ENSOKIG00005018009 #28	SNIP1 (ENSOKIG00005017975) #29	dnali1 (ENSOKIG00005017939) #30	gnl2 (ENSOKIG00005017905) #31	rspo1 (ENSOKIG00005017887) #32	FHL3 (ENSOKIG00005017877) #33	utp11 (ENSOKIG00005017841) #34	pou3f1 (ENSOKIG00005017836) #35
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000054082	THEMIS2 (ENSOMYG00000012150)	ENSOMYG00000012065 #7	smpdl3b (ENSOMYG00000012138) #8	ENSOMYG00000012018 #9	ENSOMYG00000011992 #10	MANEAL (ENSOMYG00000011982) #11	yrdc (ENSOMYG00000011956) #12	mtf1 (ENSOMYG00000011933) #13	INPP5B (ENSOMYG00000011361) #14	ENSOMYG00000011247 #16	ZC3H12A (ENSOMYG00000011243) #17	GRIK3 (ENSOMYG00000010580) #18	csf3r (ENSOMYG00000010394) #19	mrps15 (ENSOMYG00000010362) #20	OSCP1 (ENSOMYG00000010242) #22	STK40 (ENSOMYG00000010073) #23	ENSOMYG00000069582	eva1ba (ENSOMYG00000010031) #24	ENSOMYG00000010013	ENSOMYG00000062962	sh3d21 (ENSOMYG00000009987) #25	THRAP3 (ENSOMYG00000009930) #26	ENSOMYG00000009890	ENSOMYG00000073482	MAP7D1 (ENSOMYG00000009849) #27	ENSOMYG00000009719 #28	SNIP1 (ENSOMYG00000009635) #29	dnali1 (ENSOMYG00000009575) #30	gnl2 (ENSOMYG00000009355) #31	ENSOMYG00000002892
Salmo	ANCESTRAL SPECIES	32	ENSGT00530000063770.c.a.g.a	ENSGT00390000010045.s.b #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592.`b.b #9	ENSGT00940000153295.a.a.c #10	ENSGT00390000016054.b.i.e.a #11	ENSGT00390000015364.b.m #12	ENSGT00940000157291.j.b #13	ENSGT00940000156762.i #14	ENSGT00990000203803.c #16	ENSGT00940000155107.a.a.a.a #17	ENSGT00940000159465.c.a #18	ENSGT00940000158915.ab.a #19	ENSGT00390000001737.p #20	ENSGT01030000235168.d	ENSGT00390000004808.e.b #22	ENSGT00950000182986.b.d #23	ENSGT00940000154096.b.b.b.b.b.b #24	ENSGT00990000211290.B	ENSGT00940000160627.k #25	ENSGT00950000183163.a.a.ab.c #26	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000182941.a.a.b.e.a.b.e #27	ENSGT00940000159398.d #28	ENSGT00940000156553.g #29	ENSGT00390000003012 #30	ENSGT00810000125524.c #31	ENSGT00940000158871.c #32	ENSGT00950000183028.a.b.a.e #33	ENSGT00390000005813.i #34	ENSGT00940000165372.c #35
River trout	MODERN SPECIES	30	ppp1r8b (ENSSTUG00000046435)	ENSSTUG00000046429	rpa2 (ENSSTUG00000046407) #7	smpdl3b (ENSSTUG00000046396) #8	mecr (ENSSTUG00000046382) #9	LIN28A (ENSSTUG00000046372) #10	MANEAL (ENSSTUG00000046363) #11	yrdc (ENSSTUG00000046359) #12	mtf1 (ENSSTUG00000046336) #13	INPP5B (ENSSTUG00000045888) #14	ZC3H12A (ENSSTUG00000045847) #17	GRIK3 (ENSSTUG00000044620) #18	csf3r (ENSSTUG00000044555) #19	mrps15 (ENSSTUG00000044540) #20	ENSSTUG00000044527	OSCP1 (ENSSTUG00000044465) #22	STK40 (ENSSTUG00000044443) #23	eva1ba (ENSSTUG00000044439) #24	ENSSTUG00000044433	sh3d21 (ENSSTUG00000044407) #25	THRAP3 (ENSSTUG00000044338) #26	ENSSTUG00000044325	MAP7D1 (ENSSTUG00000044228) #27	MAP3K6 (ENSSTUG00000043972) #28	SNIP1 (ENSSTUG00000043947) #29	dnali1 (ENSSTUG00000043924) #30	gnl2 (ENSSTUG00000043753) #31	ENSSTUG00000043729	rspo1 (ENSSTUG00000043724) #32	FHL3 (ENSSTUG00000043720) #33	utp11 (ENSSTUG00000043702) #34
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000089357	ENSSSAG00000108651	smpdl3b (ENSSSAG00000052000) #8	ENSSSAG00000051977 #9	ENSSSAG00000112410	ENSSSAG00000051967 #10	MANEAL (ENSSSAG00000051959) #11	yrdc (ENSSSAG00000051953) #12	mtf1 (ENSSSAG00000051914) #13	INPP5B (ENSSSAG00000047240) #14	ENSSSAG00000114064 #16	ZC3H12A (ENSSSAG00000047150) #17	GRIK3 (ENSSSAG00000041700) #18	CSF3R (ENSSSAG00000041566) #19	mrps15 (ENSSSAG00000041549) #20	OSCP1 (ENSSSAG00000041394) #22	STK40 (ENSSSAG00000100035) #23	eva1ba (ENSSSAG00000097911) #24	ENSSSAG00000041298	sh3d21 (ENSSSAG00000039492) #25	THRAP3 (ENSSSAG00000041257) #26	ENSSSAG00000040460	MAP7D1 (ENSSSAG00000040212) #27	ENSSSAG00000031511 #28	SNIP1 (ENSSSAG00000031003) #29	dnali1 (ENSSSAG00000030760) #30	gnl2 (ENSSSAG00000030089) #31	rspo1 (ENSSSAG00000029819) #32	FHL3 (ENSSSAG00000110756) #33	utp11 (ENSSSAG00000029460) #34	rragc (ENSSSAG00000029084) #36
Huchen	MODERN SPECIES	193	med18 (ENSHHUG00000038886)	ppp1r8b (ENSHHUG00000038899)	THEMIS2 (ENSHHUG00000038912)	rpa2 (ENSHHUG00000038928) #7	smpdl3b (ENSHHUG00000038972) #8	LIN28A (ENSHHUG00000038978) #10	MANEAL (ENSHHUG00000038981) #11	yrdc (ENSHHUG00000038990) #12	mtf1 (ENSHHUG00000038992) #13	INPP5B (ENSHHUG00000039010) #14	ENSHHUG00000039165 #16	ZC3H12A (ENSHHUG00000039189) #17	GRIK3 (ENSHHUG00000039209) #18	csf3r (ENSHHUG00000039373) #19	ENSHHUG00000039417	OSCP1 (ENSHHUG00000039437) #22	ENSHHUG00000039453	STK40 (ENSHHUG00000039465) #23	eva1ba (ENSHHUG00000039481) #24	sh3d21 (ENSHHUG00000039486) #25	THRAP3 (ENSHHUG00000039505) #26	ENSHHUG00000039517	ENSHHUG00000039543 #27	MAP7D1 (ENSHHUG00000039548) #27	MAP3K6 (ENSHHUG00000039558) #28	SNIP1 (ENSHHUG00000039761) #29	dnali1 (ENSHHUG00000024268) #30	gnl2 (ENSHHUG00000024270) #31	ENSHHUG00000024306	rspo1 (ENSHHUG00000024308) #32	FHL3 (ENSHHUG00000024316) #33
Northern pike	MODERN SPECIES	19	GRIK3 (ENSELUG00000018369) #18	ENSELUG00000018304	ENSELUG00000025781	ZC3H12A (ENSELUG00000018274) #17	ENSELUG00000018264 #16	ENSELUG00000029697	INPP5B (ENSELUG00000018233) #14	mtf1 (ENSELUG00000018101) #13	yrdc (ENSELUG00000018071) #12	MANEAL (ENSELUG00000018058) #11	LIN28A (ENSELUG00000018033) #10	mecr (ENSELUG00000018018) #9	smpdl3b (ENSELUG00000017994) #8	mrps15 (ENSELUG00000017968) #20	PL8L1 (ENSELUG00000032488)	OSCP1 (ENSELUG00000017885) #22	STK40 (ENSELUG00000017831) #23	eva1ba (ENSELUG00000017790) #24	sh3d21 (ENSELUG00000017766) #25	THRAP3 (ENSELUG00000017733) #26	ENSELUG00000034553	ENSELUG00000017676	ENSELUG00000000703	map7d1a (ENSELUG00000017646) #27	MAP3K6 (ENSELUG00000017546) #28	SNIP1 (ENSELUG00000017487) #29	dnali1 (ENSELUG00000000681) #30	gnl2 (ENSELUG00000000675) #31	rspo1 (ENSELUG00000017421) #32	FHL3 (ENSELUG00000000657) #33	utp11 (ENSELUG00000017361) #34
Otomorpha	ANCESTRAL SPECIES	109	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28
Clupeiformes	ANCESTRAL SPECIES		ENSGT00940000156115.d	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00940000158871 #32	ENSGT00810000125524 #31	ENSGT00390000003012 #30	ENSGT00390000015257.c	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Atlantic herring	MODERN SPECIES	2	rpa2 (ENSCHAG00000003220) #7	smpdl3b (ENSCHAG00000003169) #8	mecr (ENSCHAG00000002990) #9	LIN28A (ENSCHAG00000002935) #10	MANEAL (ENSCHAG00000002914) #11	yrdc (ENSCHAG00000002890) #12	mtf1 (ENSCHAG00000002640) #13	INPP5B (ENSCHAG00000001030) #14	ENSCHAG00000000349 #16	ZC3H12A (ENSCHAG00000020414) #17	GRIK3 (ENSCHAG00000018120) #18	csf3r (ENSCHAG00000017945) #19	ENSCHAG00000017931	ENSCHAG00000017916	mrps15 (ENSCHAG00000017903) #20	OSCP1 (ENSCHAG00000017793) #22	STK40 (ENSCHAG00000017718) #23	eva1ba (ENSCHAG00000017699) #24	sh3d21 (ENSCHAG00000017676) #25	THRAP3 (ENSCHAG00000017660) #26	map7d1a (ENSCHAG00000017603) #27	MAP3K6 (ENSCHAG00000016845) #28	snip1 (ENSCHAG00000016834)	rspo1 (ENSCHAG00000016833) #32	ENSCHAG00000016824	ENSCHAG00000016810	gnl2 (ENSCHAG00000016691) #31	dnali1 (ENSCHAG00000016663) #30	ENSCHAG00000016660	MEAF6 (ENSCHAG00000016643)	FHL3 (ENSCHAG00000016623) #33
Denticle herring	MODERN SPECIES	15	SEH1L (ENSDCDG00000017711)	CEP192 (ENSDCDG00000017525)	ldlrad4b (ENSDCDG00000017506)	fam210ab (ENSDCDG00000017501)	ENSDCDG00000017438 #10	MANEAL (ENSDCDG00000017425) #11	yrdc (ENSDCDG00000017420) #12	mtf1 (ENSDCDG00000017280) #13	INPP5B (ENSDCDG00000016709) #14	ENSDCDG00000016681 #16	ZC3H12A (ENSDCDG00000016680) #17	GRIK3 (ENSDCDG00000016667) #18	ENSDCDG00000016659	csf3r (ENSDCDG00000016649) #19	mrps15 (ENSDCDG00000016644) #20	OSCP1 (ENSDCDG00000016632) #22	STK40 (ENSDCDG00000016626) #23	eva1ba (ENSDCDG00000016622) #24	sh3d21 (ENSDCDG00000016619) #25	THRAP3 (ENSDCDG00000016601) #26	map7d1a (ENSDCDG00000016562) #27	MAP3K6 (ENSDCDG00000016278) #28	SNIP1 (ENSDCDG00000016195) #29	ENSDCDG00000016180	ENSDCDG00000016171	popdc3 (ENSDCDG00000016167)	bves (ENSDCDG00000016159)	LIN28B (ENSDCDG00000016121) ##10	HACE1 (ENSDCDG00000016081)	ENSDCDG00000016059	ENSDCDG00000016058
Otophysi	ANCESTRAL SPECIES	56	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000157999	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144	ENSGT00940000164873	ENSGT00940000164800	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b.c.b
Cyprinoidei	ANCESTRAL SPECIES	60		ENSGT00930000151038	ENSGT00940000161462	ENSGT00390000014242.l	ENSGT00950000182991.A.a.c.a.b	ENSGT00950000183108.b.a.b	ENSGT00940000153801.b	ENSGT00390000016225	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619.j.a	ENSGT00940000155892	ENSGT00390000018500.b.b.a	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000157999	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144	ENSGT00940000164873.e	ENSGT00940000164873.f	ENSGT00940000164800	ENSGT00940000157151.c	ENSGT00940000161438
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	99	ENSGT01030000235108	ENSGT00940000160525	ENSGT01010000222294.c.a.ib.b.b	ENSGT00940000157687.a.b	ENSGT01030000234856	ENSGT00940000158130.i.b	ENSGT00940000153801.b.k.b	ENSGT00390000016225.k	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619.j.a.d	ENSGT00940000155892.e	ENSGT00390000018500.b.b.a.a	ENSGT00390000001737.q #20	ENSGT01030000235168.b	ENSGT00390000004808.e.c #22	ENSGT00950000182986.b.b #23	ENSGT00940000154096.b.b.b.b.b.c #24	ENSGT00940000160627.j #25	ENSGT00950000183163.a.a.ab.a #26	ENSGT00950000182941.a.a.b.e.a.b.b #27	ENSGT00940000159398.f #28	ENSGT00940000157999.`b	ENSGT00530000063624.C.b.g	ENSGT00910000144179.b.b.o.a.c	ENSGT00390000002144.fb.b	ENSGT00940000164873.e.b	ENSGT00940000164800.d	ENSGT00940000157151.c.a	ENSGT00940000161438.d	ENSGT01030000234597.b.a.b.c.a
Goldfish	MODERN SPECIES	35	baalca (ENSCARG00000055426)	atp6v1c1a (ENSCARG00000055128)	azin1a (ENSCARG00000055095)	ENSCARG00000055085	ENSCARG00000054657	ifnlr1 (ENSCARG00000054596)	ENSCARG00000054580	txnipb (ENSCARG00000054570)	ANKRD34A (ENSCARG00000054557)	SLC4A7 (ENSCARG00000051769)	dpy19l1l (ENSCARG00000050759)	ENSCARG00000050729	capn7 (ENSCARG00000050670)	sh3bp5b (ENSCARG00000050652)	mrps15 (ENSCARG00000050614) #20	OSCP1 (ENSCARG00000050573) #22	STK40 (ENSCARG00000050551) #23	eva1ba (ENSCARG00000050535) #24	sh3d21 (ENSCARG00000050454) #25	THRAP3 (ENSCARG00000050399) #26	ENSCARG00000050384	map7d1a (ENSCARG00000050150) #27	MAP3K6 (ENSCARG00000050052) #28	SCMH1 (ENSCARG00000050008)	cited4b (ENSCARG00000049988)	ENSCARG00000055671	ctps1b (ENSCARG00000055537)	taf12 (ENSCARG00000055487)	rab42b (ENSCARG00000055462)	ENSCARG00000055444	ENSCARG00000055400
Cyprininae_a	ANCESTRAL SPECIES	192	ENSGT00390000011734.c	ENSGT00930000151038.g	ENSGT00940000161462.c	ENSGT00390000014242.l.b	ENSGT00950000182991.A.a.c.a.b.e	ENSGT00950000183108.b.a.b.c	ENSGT00940000153801.b.k.a	ENSGT00390000016225.k	ENSGT01030000235163	ENSGT01030000235403	ENSGT00940000155619.j.a.d	ENSGT00940000155892.e	ENSGT00390000018500.b.b.a.a	ENSGT00390000001737.q #20	ENSGT01030000235168.b	ENSGT00390000004808.e.c #22	ENSGT00950000182986.b.b #23	ENSGT00940000154096.b.b.b.b.b.c #24	ENSGT00940000160627.j #25	ENSGT00950000183163.a.a.ab.a #26	ENSGT00950000182941.a.a.b.e.a.b.b #27	ENSGT00940000159398.f #28	ENSGT00940000157999.`b	ENSGT00530000063624.C.b.g	ENSGT00910000144179.b.b.o.a.c	ENSGT00390000002144.fb.b	ENSGT00940000164873.e.b	ENSGT00940000164800.d	ENSGT00940000157151.c.a
Common carp reference	MODERN SPECIES	2	myo1eb (ENSCCRG00000081040)	prune (ENSCCRG00000053410)	cdc42se1 (ENSCCRG00000072641)	elp6 (ENSCCRG00000006335)	aldh5a1 (ENSCCRG00000054694)	ENSCCRG00000053628	ENSCCRG00000002479	pnp4b (ENSCCRG00000055203)	ENSCCRG00000037627	decr1 (ENSCCRG00000057184)	ENSCCRG00000037667	ENSCCRG00000002746	capn7 (ENSCCRG00000015763)	sh3bp5b (ENSCCRG00000015738)	mrps15 (ENSCCRG00000015732) #20	OSCP1 (ENSCCRG00000015603) #22	STK40 (ENSCCRG00000053931) #23	eva1ba (ENSCCRG00000080956) #24	sh3d21 (ENSCCRG00000008250) #25	THRAP3 (ENSCCRG00000008262) #26	map7d1a (ENSCCRG00000006475) #27	ENSCCRG00000007359 #28	ENSCCRG00000080902	cited4b (ENSCCRG00000077681)	ENSCCRG00000054658	ctps1b (ENSCCRG00000053678)	rab42b (ENSCCRG00000006957)	ENSCCRG00000031270	ptprub (ENSCCRG00000011143)	paqr7b (ENSCCRG00000067636)	stmn1b (ENSCCRG00000010471)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	554	aldh5a1 (ENSSGRG00000036149)	ENSSGRG00000036148	ENSSGRG00000036147	pnp4b (ENSSGRG00000036145)	CALB1 (ENSSGRG00000036122)	decr1 (ENSSGRG00000036119)	PIK3R4 (ENSSGRG00000034920)	ENSSGRG00000034894	ENSSGRG00000034893	ENSSGRG00000034891	capn7 (ENSSGRG00000034342)	sh3bp5b (ENSSGRG00000034229)	mrps15 (ENSSGRG00000034224) #20	ENSSGRG00000034219	OSCP1 (ENSSGRG00000034218) #22	OSCP1 (ENSSGRG00000034217) #22	STK40 (ENSSGRG00000034202) #23	eva1ba (ENSSGRG00000034201) #24	sh3d21 (ENSSGRG00000034198) #25	THRAP3 (ENSSGRG00000034193) #26	map7d1a (ENSSGRG00000034182) #27	MAP3K6 (ENSSGRG00000033642) #28	SCMH1 (ENSSGRG00000033634)
Golden-line barbel	MODERN SPECIES	554	ENSSGRG00000036150	aldh5a1 (ENSSGRG00000036149)	ENSSGRG00000036148	ENSSGRG00000036147	pnp4b (ENSSGRG00000036145)	CALB1 (ENSSGRG00000036122)	decr1 (ENSSGRG00000036119)	PIK3R4 (ENSSGRG00000034920)	ENSSGRG00000034894	ENSSGRG00000034893	ENSSGRG00000034891	capn7 (ENSSGRG00000034342)	sh3bp5b (ENSSGRG00000034229)	mrps15 (ENSSGRG00000034224) #20	ENSSGRG00000034219	OSCP1 (ENSSGRG00000034218) #22	OSCP1 (ENSSGRG00000034217) #22	STK40 (ENSSGRG00000034202) #23	eva1ba (ENSSGRG00000034201) #24	sh3d21 (ENSSGRG00000034198) #25	THRAP3 (ENSSGRG00000034193) #26	map7d1a (ENSSGRG00000034182) #27	MAP3K6 (ENSSGRG00000033642) #28	SCMH1 (ENSSGRG00000033634)
Cyprininae	ANCESTRAL SPECIES	28				ENSGT00930000151038.h	ENSGT00940000161462.d	ENSGT00390000014242.l.a	ENSGT00950000182991.A.a.c.a.b.f	ENSGT00950000183108.b.a.b.d	ENSGT00940000153801.b.l	ENSGT00390000016225.l	ENSGT00940000155619.j.a.c	ENSGT00940000155892.f	ENSGT00390000018500.b.b.a.b	ENSGT00390000001737.r #20	ENSGT01030000235168.a	ENSGT00390000004808.e.d #22	ENSGT00950000182986.b.a #23	ENSGT00940000154096.b.b.b.b.b.d #24	ENSGT00940000160627.i #25	ENSGT00950000183163.a.a.ab.b #26	ENSGT00950000182941.a.a.b.e.a.b.a #27	ENSGT00940000159398.e #28	ENSGT00940000157999.z	ENSGT00530000063624.C.b.h	ENSGT00910000144179.b.b.o.a.d	ENSGT00390000002144.fb.a	ENSGT00940000164873.e.a	ENSGT00390000002144.gb	ENSGT00940000164873.f	ENSGT00940000164800.c	ENSGT00940000157151.c.b
Cyprininae_a	ANCESTRAL SPECIES	7	ENSGT00450000040262.i.g.a	ENSGT00940000160112.b.a	ENSGT00940000156794.f	ENSGT00930000151038.h	ENSGT00940000161462.d	ENSGT00390000014242.l.a	ENSGT00950000182991.A.a.c.a.b.f	ENSGT00950000183108.b.a.b.d	ENSGT00940000153801.b.l	ENSGT00390000016225.l	ENSGT00940000155619.j.a.c	ENSGT00940000155892.f	ENSGT00390000018500.b.b.a.b	ENSGT00390000001737.r #20	ENSGT01030000235168.a	ENSGT00390000004808.e.d #22	ENSGT00950000182986.b.a #23	ENSGT00940000154096.b.b.b.b.b.d #24	ENSGT00940000160627.i #25	ENSGT00950000183163.a.a.ab.b #26	ENSGT00950000182941.a.a.b.e.a.b.a #27	ENSGT00940000159398.e #28	ENSGT00940000157999.z	ENSGT00530000063624.C.b.h	ENSGT00910000144179.b.b.o.a.d	ENSGT00390000002144.fb.a	ENSGT00940000164873.e.a	ENSGT00390000002144.gb	ENSGT00940000164873.f	ENSGT00940000164800.c	ENSGT00940000157151.c.b
Common carp reference	MODERN SPECIES	47	pi4kb (ENSCCRG00000021611)	myo1eb (ENSCCRG00000082560)	prune (ENSCCRG00000012767)	cdc42se1 (ENSCCRG00000006326)	aldh5a1 (ENSCCRG00000054852)	ENSCCRG00000002659	ENSCCRG00000033400	pnp4b (ENSCCRG00000081736)	ENSCCRG00000003497	decr1 (ENSCCRG00000078230)	ENSCCRG00000003522	ENSCCRG00000007312	capn7 (ENSCCRG00000005977)	sh3bp5b (ENSCCRG00000006451)	mrps15 (ENSCCRG00000006421) #20	OSCP1 (ENSCCRG00000073652) #22	STK40 (ENSCCRG00000015578) #23	eva1ba (ENSCCRG00000065911) #24	sh3d21 (ENSCCRG00000051498) #25	THRAP3 (ENSCCRG00000051496) #26	map7d1a (ENSCCRG00000065527) #27	ENSCCRG00000006540 #28	ENSCCRG00000006980	cited4b (ENSCCRG00000065553)	ctps1b (ENSCCRG00000006972)	rab42b (ENSCCRG00000073740)	taf12 (ENSCCRG00000058395)	si:dkey-34d22.2 (ENSCCRG00000046399)	ENSCCRG00000002646	ptprub (ENSCCRG00000031387)	paqr7b (ENSCCRG00000081087)
Golden-line barbel	MODERN SPECIES	103	aldh5a1 (ENSSGRG00000011425)	ENSSGRG00000011603	ENSSGRG00000011612	pnp4b (ENSSGRG00000011617)	CALB1 (ENSSGRG00000011618)	decr1 (ENSSGRG00000011620)	ENSSGRG00000011622	decr1 (ENSSGRG00000011623)	PIK3R4 (ENSSGRG00000011694)	ENSSGRG00000012737	ENSSGRG00000012740	capn7 (ENSSGRG00000012741)	sh3bp5b (ENSSGRG00000012848)	mrps15 (ENSSGRG00000012849) #20	ENSSGRG00000012851	OSCP1 (ENSSGRG00000012853) #22	STK40 (ENSSGRG00000012994) #23	eva1ba (ENSSGRG00000013005) #24	sh3d21 (ENSSGRG00000013008) #25	ENSSGRG00000013011	THRAP3 (ENSSGRG00000013014) #26	map7d1a (ENSSGRG00000013019) #27	MAP3K6 (ENSSGRG00000013042) #28	SCMH1 (ENSSGRG00000013239)	cited4b (ENSSGRG00000013241)	ctps1b (ENSSGRG00000013262)	taf12 (ENSSGRG00000014368)	rab42b (ENSSGRG00000014377)	ENSSGRG00000014379	ptprub (ENSSGRG00000014465)	paqr7b (ENSSGRG00000018604)
Goldfish	MODERN SPECIES	7	cdc42se1 (ENSCARG00000005798)	gabpb2b (ENSCARG00000005813)	elp6 (ENSCARG00000005827)	aldh5a1 (ENSCARG00000005894)	ENSCARG00000006355	TDP2 (ENSCARG00000006763)	pnp4b (ENSCARG00000006776)	CALB1 (ENSCARG00000006811)	decr1 (ENSCARG00000006829)	PIK3R4 (ENSCARG00000006883)	ENSCARG00000006998	capn7 (ENSCARG00000007054)	sh3bp5b (ENSCARG00000007340)	mrps15 (ENSCARG00000007353) #20	ENSCARG00000007365	OSCP1 (ENSCARG00000007397) #22	STK40 (ENSCARG00000007427) #23	eva1ba (ENSCARG00000007440) #24	sh3d21 (ENSCARG00000007452) #25	THRAP3 (ENSCARG00000007470) #26	map7d1a (ENSCARG00000007511) #27	ENSCARG00000007670 #28	SCMH1 (ENSCARG00000008621)	cited4b (ENSCARG00000008702)	ctps1b (ENSCARG00000008731)	taf12 (ENSCARG00000008850)	rab42b (ENSCARG00000008855)	ENSCARG00000008863	ptprub (ENSCARG00000009039)	FHL3 (ENSCARG00000012912) #33	utp11 (ENSCARG00000012919) #34
Zebrafish	MODERN SPECIES	7	ADGRB1 (ENSDARG00000075133)	ENSDARG00000088650	snrnp48 (ENSDARG00000039989)	aldh5a1 (ENSDARG00000076544)	ENSDARG00000069941	pnp4b (ENSDARG00000029230)	ENSDARG00000103001	CALB1 (ENSDARG00000031598)	decr1 (ENSDARG00000003869)	PIK3R4 (ENSDARG00000060469)	ENSDARG00000079752	capn7 (ENSDARG00000102987)	sh3bp5b (ENSDARG00000103978)	ENSDARG00000114387	mrps15 (ENSDARG00000109289) #20	OSCP1 (ENSDARG00000101888) #22	STK40 (ENSDARG00000098135) #23	eva1ba (ENSDARG00000102701) #24	sh3d21 (ENSDARG00000099448) #25	THRAP3 (ENSDARG00000101989) #26	map7d1a (ENSDARG00000098802) #27	ENSDARG00000104760 #28	scmh1 (ENSDARG00000104311)	cited4b (ENSDARG00000101009)	ctps1b (ENSDARG00000098386)	taf12 (ENSDARG00000104030)	rab42b (ENSDARG00000101170)	ENSDARG00000104865	ENSDARG00000101352	si:dkey-34d22.2 (ENSDARG00000100379)	ENSDARG00000103181
Characiphysae	ANCESTRAL SPECIES		ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000157999	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144	ENSGT00940000164873	ENSGT00940000164800	ENSGT00410000025596.a.b.a	ENSGT00940000178073	ENSGT00940000157151.c
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000157999	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144	ENSGT00940000164873	ENSGT00940000164800	ENSGT00410000025596.a.b.a	ENSGT00940000178073	ENSGT00940000157151.c
Characoidei	ANCESTRAL SPECIES	7	ENSGT00530000063770.c.a	ENSGT00390000010045.s #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000153295.a.a #10	ENSGT00390000016054.b.i #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00990000203803 #16	ENSGT00940000155107.a.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a.b #27	ENSGT00940000159398 #28	ENSGT00940000157999	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144	ENSGT00940000164873	ENSGT00940000164800	ENSGT00410000025596.a.b.a	ENSGT00940000178073
Red-bellied piranha	MODERN SPECIES	138	THEMIS2 (ENSPNAG00000015920)	rpa2 (ENSPNAG00000015868) #7	smpdl3b (ENSPNAG00000015833) #8	mecr (ENSPNAG00000015792) #9	LIN28A (ENSPNAG00000015739) #10	MANEAL (ENSPNAG00000015638) #11	yrdc (ENSPNAG00000015625) #12	mtf1 (ENSPNAG00000015605) #13	INPP5B (ENSPNAG00000015577) #14	ENSPNAG00000015519 #16	ZC3H12A (ENSPNAG00000015494) #17	GRIK3 (ENSPNAG00000003389) #18	csf3r (ENSPNAG00000015415) #19	mrps15 (ENSPNAG00000015400) #20	ENSPNAG00000015385	OSCP1 (ENSPNAG00000015372) #22	STK40 (ENSPNAG00000015317) #23	eva1ba (ENSPNAG00000015261) #24	sh3d21 (ENSPNAG00000015238) #25	THRAP3 (ENSPNAG00000015136) #26	map7d1a (ENSPNAG00000003361) #27	MAP3K6 (ENSPNAG00000004700) #28	SCMH1 (ENSPNAG00000014937)	cited4b (ENSPNAG00000003315)	ctps1b (ENSPNAG00000014866)	taf12 (ENSPNAG00000003268)	rab42b (ENSPNAG00000014821)
Mexicana tetra	MODERN SPECIES	1	mecr (ENSAMXG00000001544) #9	LIN28A (ENSAMXG00000042088) #10	MANEAL (ENSAMXG00000040401) #11	yrdc (ENSAMXG00000037791) #12	mtf1 (ENSAMXG00000001644) #13	INPP5B (ENSAMXG00000001691) #14	ENSAMXG00000037974	ENSAMXG00000034489 #16	ZC3H12A (ENSAMXG00000001736) #17	ENSAMXG00000042004	ENSAMXG00000031100	GRIK3 (ENSAMXG00000001749) #18	csf3r (ENSAMXG00000001766) #19	mrps15 (ENSAMXG00000001781) #20	ENSAMXG00000001798	OSCP1 (ENSAMXG00000042434) #22	STK40 (ENSAMXG00000029312) #23	eva1ba (ENSAMXG00000041799) #24	sh3d21 (ENSAMXG00000001850) #25	THRAP3 (ENSAMXG00000001863) #26	map7d1a (ENSAMXG00000001876) #27	MAP3K6 (ENSAMXG00000001890) #28	scmh1 (ENSAMXG00000036301)	ENSAMXG00000034018	ctps1b (ENSAMXG00000001913)	taf12 (ENSAMXG00000042121)	rab42b (ENSAMXG00000038342)	ENSAMXG00000001945	ENSAMXG00000032787	ENSAMXG00000040414	emc2 (ENSAMXG00000039406)
Electric eel	MODERN SPECIES	163					mecr (ENSEEEG00000024027) #9	LIN28A (ENSEEEG00000024019) #10	MANEAL (ENSEEEG00000024018) #11	yrdc (ENSEEEG00000024017) #12	mtf1 (ENSEEEG00000024015) #13	INPP5B (ENSEEEG00000023988) #14	ZC3H12A (ENSEEEG00000023957) #17	GRIK3 (ENSEEEG00000023943) #18	csf3r (ENSEEEG00000023938) #19	mrps15 (ENSEEEG00000023936) #20	ENSEEEG00000023935	OSCP1 (ENSEEEG00000023929) #22	STK40 (ENSEEEG00000023925) #23	ENSEEEG00000023923	trpa1a (ENSEEEG00000023919)	ENSEEEG00000023914	rpl7 (ENSEEEG00000023909)	rdh10b (ENSEEEG00000023904)	ube2wa (ENSEEEG00000023902)	elocb (ENSEEEG00000023901)	TMEM70 (ENSEEEG00000023900)	jph1b (ENSEEEG00000023898)	PI15 (ENSEEEG00000023896)	crispld1b (ENSEEEG00000023893)	socs6b (ENSEEEG00000023892)	cbln2a (ENSEEEG00000023889)	IWS1 (ENSEEEG00000023885)
Channel catfish	MODERN SPECIES		stmn1 (ENSIPUG00000016225)	paqr7b (ENSIPUG00000016214)	ENSIPUG00000016209	ENSIPUG00000016175	ptpru (ENSIPUG00000015960)	ENSIPUG00000015908	RAB39B (ENSIPUG00000015874)	taf12 (ENSIPUG00000015799)	ctps1b (ENSIPUG00000015748)	CITED3 (ENSIPUG00000015725)	SCMH1 (ENSIPUG00000015680)	ENSIPUG00000015639 #28	csf3r (ENSIPUG00000015617) #19	mrps15 (ENSIPUG00000015599) #20	pl8l1 (ENSIPUG00000015558)	Oscp1 (ENSIPUG00000015510) #22	stk40 (ENSIPUG00000015473) #23	Eva1b (ENSIPUG00000015458) #24	Cd2ap (ENSIPUG00000015399) #25	THRAP3 (ENSIPUG00000015339) #26	map7d1 (ENSIPUG00000015269) #27	GRIK3 (ENSIPUG00000015183) #18	Zc3h12a (ENSIPUG00000015158) #17	ENSIPUG00000015128 #16	inpp5b (ENSIPUG00000015075) #14	Mtf1 (ENSIPUG00000015020) #13	yrdc (ENSIPUG00000014985) #12	MANEAL (ENSIPUG00000014973) #11	ENSIPUG00000014960 #11	LIN28A (ENSIPUG00000014952) #10	mecr (ENSIPUG00000014921) #9
Osteoglossiformes	ANCESTRAL SPECIES	101	ENSGT00390000010045 #7	ENSGT00950000183182.a.a #8	ENSGT00940000156592 #9	ENSGT00940000158412	ENSGT00940000153295.a #10	ENSGT00390000016054.b #11	ENSGT00390000015364.b #12	ENSGT00940000157291 #13	ENSGT00940000156762 #14	ENSGT00530000063402.a	ENSGT00940000155107.a.a #17	ENSGT00940000159465 #18	ENSGT00940000158915 #19	ENSGT00390000001737 #20	ENSGT01030000235168	ENSGT00390000004808.e #22	ENSGT00950000182986.b #23	ENSGT00940000154096.b.b.b.b.b #24	ENSGT00940000160627 #25	ENSGT00950000183163.a.a.ab #26	ENSGT00950000182941.a.a.b.e.a #27	ENSGT00940000159398 #28	ENSGT00940000156553 #29	ENSGT00390000003012 #30	ENSGT00810000125524 #31	ENSGT00940000158871 #32	ENSGT00390000015257	ENSGT00950000183028.a.b.a #33	ENSGT00390000005813 #34	ENSGT00940000165372 #35	ENSGT00950000183031.A.a.a #36
Asian bonytongue	MODERN SPECIES	10	mecr (ENSSFOG00015006220) #9	ENSSFOG00015006202	pdik1l (ENSSFOG00015024565)	lin28ab (ENSSFOG00015027784) #10	maneal (ENSSFOG00015006145) #11	yrdc (ENSSFOG00015006128) #12	ENSSFOG00015029547	mtf1 (ENSSFOG00015006086) #13	INPP5B (ENSSFOG00015006031) #14	sf3a3 (ENSSFOG00015005975)	zc3h12ab (ENSSFOG00015030061) #17	GRIK3 (ENSSFOG00015005815) #18	csf3r (ENSSFOG00015005794) #19	mrps15 (ENSSFOG00015005771) #20	ENSSFOG00015005768	OSCP1 (ENSSFOG00015005723) #22	STK40 (ENSSFOG00015030580) #23	eva1ba (ENSSFOG00015005660) #24
P. kingsleyae	MODERN SPECIES	185	rpa2 (ENSPKIG00000004392) #7	smpdl3b (ENSPKIG00000004430) #8	mecr (ENSPKIG00000004463) #9	pdik1l (ENSPKIG00000004508)	lin28ab (ENSPKIG00000004532) #10	maneal (ENSPKIG00000004548) #11	yrdc (ENSPKIG00000004574) #12	mtf1 (ENSPKIG00000004616) #13	INPP5B (ENSPKIG00000004669) #14	sf3a3 (ENSPKIG00000004719)	zc3h12ab (ENSPKIG00000004769) #17	GRIK3 (ENSPKIG00000004789) #18	csf3r (ENSPKIG00000004855) #19	mrps15 (ENSPKIG00000004939) #20	ENSPKIG00000004957	OSCP1 (ENSPKIG00000004997) #22	STK40 (ENSPKIG00000005059) #23	eva1ba (ENSPKIG00000005092) #24	sh3d21 (ENSPKIG00000005110) #25	THRAP3 (ENSPKIG00000005150) #26	map7d1a (ENSPKIG00000005222) #27	ENSPKIG00000005338 #28	SNIP1 (ENSPKIG00000005359) #29	dnali1 (ENSPKIG00000005377) #30	gnl2 (ENSPKIG00000005438) #31	rspo1 (ENSPKIG00000005509) #32	meaf6 (ENSPKIG00000005531)
Osteoglossocephalai	ANCESTRAL SPECIES	446															ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26
Clupeocephala	ANCESTRAL SPECIES	19	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00390000017974.ob ##37	ENSGT01090000260070.C.b	ENSGT00940000154450.tc	ENSGT00940000164147.b	ENSGT00940000156338.b	ENSGT00390000014274	ENSGT00940000157751	ENSGT00530000063023.A.b
Otomorpha	ANCESTRAL SPECIES	9	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00390000017974.ob ##37	ENSGT01090000260070.C.b	ENSGT00940000154450.tc	ENSGT00940000164147.b	ENSGT00940000156338.b	ENSGT00390000014274	ENSGT00940000157751	ENSGT00530000063023.A.b
Clupeiformes	ANCESTRAL SPECIES	42	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.i	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257.d	ENSGT00950000183028.a.b.b ##33	ENSGT00390000017974.ob ##37	ENSGT01090000260070.C.b	ENSGT01030000235133.c
Denticle herring	MODERN SPECIES	12	ENSDCDG00000034726	ago4 (ENSDCDG00000034759)	brd2a (ENSDCDG00000035175)	hsd17b8 (ENSDCDG00000035184)	col11a2 (ENSDCDG00000035209)	rxrba (ENSDCDG00000035254)	myo1g (ENSDCDG00000035308)	si:dkeyp-92c9.2 (ENSDCDG00000035424)	illr1 (ENSDCDG00000035425)	edn1 (ENSDCDG00000035426)	HIVEP1 (ENSDCDG00000035429)	TMEM170B (ENSDCDG00000035431)	nedd9 (ENSDCDG00000035433)	smim13 (ENSDCDG00000035434)	zc3h12ab (ENSDCDG00000035435) ##17	oscp1a (ENSDCDG00000035436) ##22	LSM10 (ENSDCDG00000035437)	eva1bb (ENSDCDG00000035438) ##24	thrap3b (ENSDCDG00000035440) ##26	map7d1b (ENSDCDG00000035444) ##27	stpg1 (ENSDCDG00000035447)	meaf6 (ENSDCDG00000035448)	fhl3b (ENSDCDG00000035449) ##33	ENSDCDG00000005755 #36	ENSDCDG00000005859	mycbp (ENSDCDG00000005973) ##37	gja9b (ENSDCDG00000006875)	ENSDCDG00000006887	mhc1zka (ENSDCDG00000006963)	ENSDCDG00000007050	ENSDCDG00000007061
Atlantic herring	MODERN SPECIES	10	pef1 (ENSCHAG00000002509)	smim12 (ENSCHAG00000002472)	gja4 (ENSCHAG00000002465)	ENSCHAG00000002439	ENSCHAG00000002422	dlgap3 (ENSCHAG00000002240)	ENSCHAG00000001932	ENSCHAG00000001909	ENSCHAG00000001663	edn1 (ENSCHAG00000001595)	HIVEP1 (ENSCHAG00000001481)	TMEM170B (ENSCHAG00000001423)	nedd9 (ENSCHAG00000001391)	smim13 (ENSCHAG00000001366)	ENSCHAG00000001342	oscp1a (ENSCHAG00000001289) ##22	LSM10 (ENSCHAG00000001270)	eva1bb (ENSCHAG00000001235) ##24	thrap3b (ENSCHAG00000001178) ##26	map7d1b (ENSCHAG00000001085) ##27	stpg1 (ENSCHAG00000001040)	meaf6 (ENSCHAG00000000917)	fhl3b (ENSCHAG00000000790) ##33	rragca (ENSCHAG00000000775) #36	mycbp (ENSCHAG00000000761) ##37	gja9b (ENSCHAG00000000710)	ENSCHAG00000000674	ENSCHAG00000000655	ENSCHAG00000000596	ENSCHAG00000000551	ENSCHAG00000012419
Otophysi	ANCESTRAL SPECIES	174	ENSGT00390000016546	ENSGT00390000018422	ENSGT00940000161897.b.a	ENSGT00940000163549	ENSGT00740000117011	ENSGT01060000248801	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00390000006486	ENSGT00940000159791	ENSGT00940000163557.C	ENSGT00940000162238.a.a	ENSGT00940000156079	ENSGT00940000157280.l	ENSGT00940000154725.j.a	ENSGT00940000154725.i
Characiphysae	ANCESTRAL SPECIES	91	ENSGT00940000164978.a	ENSGT00940000158770	ENSGT00510000046908.a.a.a	ENSGT00940000165034	ENSGT00390000006954	ENSGT00950000183054.a.a.b	ENSGT00940000155429.b	ENSGT00940000166166	ENSGT00940000160581	ENSGT01030000234543.A.b	ENSGT00950000183175.B.a	ENSGT01090000260400	ENSGT00940000162796	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00950000183031.A.a.a #36	ENSGT00390000006486	ENSGT00940000159791	ENSGT00940000163557.C	ENSGT00940000162238.a.a	ENSGT00940000156079	ENSGT00940000157280.l	ENSGT00940000154725.j.a
Characiphysae_b	ANCESTRAL SPECIES	92	ENSGT00940000158770	ENSGT00510000046908.a.a.a	ENSGT00940000165034	ENSGT00390000006954	ENSGT00950000183054.a.a.b	ENSGT00940000155429.b	ENSGT00940000166166	ENSGT00940000160581	ENSGT01030000234543.A.b	ENSGT00950000183175.B.a	ENSGT01090000260400	ENSGT00940000162796	ENSGT00970000195294	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00390000006486	ENSGT00940000159791	ENSGT00940000163557.C	ENSGT00940000162238.a.a	ENSGT00940000156079	ENSGT00940000157280.l	ENSGT00940000154725.j.a	ENSGT00940000154725.i
Characoidei	ANCESTRAL SPECIES	178										ENSGT00950000183175.B.a	ENSGT01090000260400	ENSGT00940000162796	ENSGT00970000195294	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00390000006486	ENSGT00940000159791	ENSGT00940000163557.C	ENSGT00940000162238.a.a	ENSGT00940000156079	ENSGT00940000157280.l	ENSGT00940000154725.j.a	ENSGT00940000154725.i
Red-bellied piranha	MODERN SPECIES	263														ENSPNAG00000028945	ENSPNAG00000005053	oscp1a (ENSPNAG00000004456) ##22	LSM10 (ENSPNAG00000028829)	eva1bb (ENSPNAG00000004796) ##24	thrap3b (ENSPNAG00000028762) ##26	map7d1b (ENSPNAG00000004418) ##27	stpg1 (ENSPNAG00000004405)	meaf6 (ENSPNAG00000028667)	fhl3b (ENSPNAG00000004889) ##33	TRAPPC9 (ENSPNAG00000005622)	kcnk9 (ENSPNAG00000028505)	ENSPNAG00000028491	ENSPNAG00000028469	ENSPNAG00000028401	ENSPNAG00000004348
Mexicana tetra	MODERN SPECIES	65										sncb (ENSAMXG00000043895)	ENSAMXG00000030542	ENSAMXG00000041625	zc3h12ab (ENSAMXG00000029641) ##17	ENSAMXG00000031811	ENSAMXG00000041581	oscp1a (ENSAMXG00000039731) ##22	LSM10 (ENSAMXG00000025301)	eva1bb (ENSAMXG00000041367) ##24	thrap3b (ENSAMXG00000020877) ##26	map7d1b (ENSAMXG00000020859) ##27	stpg1 (ENSAMXG00000020849)	meaf6 (ENSAMXG00000030458)	fhl3b (ENSAMXG00000032557) ##33	TRAPPC9 (ENSAMXG00000020787)	ENSAMXG00000038821	kcnk9 (ENSAMXG00000019517)	ENSAMXG00000019441	ENSAMXG00000036148	FAM135B (ENSAMXG00000017175)
Channel catfish	MODERN SPECIES	5	ENSIPUG00000006692	ENSIPUG00000006669	anxa6 (ENSIPUG00000006364)	tnip1 (ENSIPUG00000006222)	gpx3 (ENSIPUG00000006173)	dctn4 (ENSIPUG00000006111)	synpo (ENSIPUG00000006100)	tspan17 (ENSIPUG00000006010)	MCHR2 (ENSIPUG00000005988)	lrrtm2 (ENSIPUG00000005981)	CTNNA1 (ENSIPUG00000005901)	LRRTM2 (ENSIPUG00000005874)	sncb (ENSIPUG00000005865)	ENSIPUG00000005858	zc3h12ab (ENSIPUG00000005852) ##17	oscp1a (ENSIPUG00000005816) ##22	LSM10 (ENSIPUG00000005808)	ENSIPUG00000005788	eva1bb (ENSIPUG00000005771) ##24	thrap3b (ENSIPUG00000005707) ##26	map7d1b (ENSIPUG00000005646) ##27	stpg1 (ENSIPUG00000005620)	meaf6 (ENSIPUG00000005566)	ENSIPUG00000005538	fhl3b (ENSIPUG00000005470) ##33	rragcb (ENSIPUG00000005440) #36	TRAPPC9 (ENSIPUG00000005309)	kcnk9 (ENSIPUG00000005285)	ENSIPUG00000005154	ENSIPUG00000005100	fam135b (ENSIPUG00000005028)
Cyprinoidei	ANCESTRAL SPECIES	35	ENSGT00390000018422	ENSGT00940000161897.b.a	ENSGT00940000163549	ENSGT00740000117011	ENSGT01060000248801	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b	ENSGT01030000234592.A.a.b.c	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00390000006486	ENSGT00940000159791	ENSGT00940000159308	ENSGT00940000162238.a.a	ENSGT00940000156079	ENSGT00940000157280.l	ENSGT00940000154725.j.b	ENSGT00940000154725.j.a.a.a.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	143	ENSGT00940000160424.l	ENSGT00950000183008.a.a.a.b.d	ENSGT00560000078630.a.a.a	ENSGT00560000078630.b	ENSGT00940000155107.a.a.b.b ##17	ENSGT00390000004808.f.b ##22	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.d ##24	ENSGT00950000183163.a.a.bb.b ##26	ENSGT00950000182941.a.a.b.e.b.a ##27	ENSGT00390000011598.a.a	ENSGT00390000015257.a	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00940000155107.a.a.b.a ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f.a ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a.c ##24	ENSGT00950000183163.a.a.bb.a ##26	ENSGT00950000182941.a.a.b.e.b.b ##27	ENSGT00390000011598.b	ENSGT00390000015257.b.b	ENSGT00950000183028.a.b.b.g ##33	ENSGT00950000183031.A.a.a.sd.a #36	ENSGT00390000006486.i.b	ENSGT00940000159791.w	ENSGT00940000163557.C	ENSGT00940000156079.d	ENSGT00940000157280.l.b.a	ENSGT00940000154725.j.b.b	ENSGT00940000154725.j.a.a.a.a.a.b.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	38	CDK12 (ENSCARG00000029853)	ENSCARG00000029836	JUP (ENSCARG00000029775)	wipf2b (ENSCARG00000029755)	pdk2b (ENSCARG00000029746)	zgc:174904 (ENSCARG00000029741)	ENSCARG00000029734	GRIK5 (ENSCARG00000028160)	gsk3aa (ENSCARG00000028048)	ENSCARG00000028022	nedd9 (ENSCARG00000027982)	smim13 (ENSCARG00000027974)	ENSCARG00000027832	zc3h12ab (ENSCARG00000027812) ##17	ENSCARG00000027799	oscp1a (ENSCARG00000027787) ##22	LSM10 (ENSCARG00000027782)	eva1bb (ENSCARG00000027776) ##24	ENSCARG00000027768	map7d1b (ENSCARG00000027760) ##27	stpg1 (ENSCARG00000027732)	meaf6 (ENSCARG00000027707)	ENSCARG00000027676	ENSCARG00000027669	ENSCARG00000027653	ENSCARG00000027628	zgc:86598 (ENSCARG00000027280)	FAM135B (ENSCARG00000027192)	ENSCARG00000027155	ENSCARG00000027135	kcnk9 (ENSCARG00000027122)
Goldfish	MODERN SPECIES	38	ENSCARG00000065780	ENSCARG00000065785	ENSCARG00000065786	ENSCARG00000065788	ENSCARG00000065800	ndufv1 (ENSCARG00000065911)	ENSCARG00000066017	si:ch211-81a5.8 (ENSCARG00000066027)	clk2a (ENSCARG00000066066)	ENSCARG00000066545	nedd9 (ENSCARG00000066558)	smim13 (ENSCARG00000066566)	ENSCARG00000066574	zc3h12ab (ENSCARG00000066658) ##17	ENSCARG00000066670	oscp1a (ENSCARG00000066679) ##22	LSM10 (ENSCARG00000066701)	eva1bb (ENSCARG00000066705) ##24	thrap3b (ENSCARG00000026833) ##26	map7d1b (ENSCARG00000026890) ##27	meaf6 (ENSCARG00000026941)	fhl3b (ENSCARG00000026986) ##33	rragcb (ENSCARG00000026997) #36	TRAPPC9 (ENSCARG00000027040)	kcnk9 (ENSCARG00000027122)	ENSCARG00000027135	ENSCARG00000027155	FAM135B (ENSCARG00000027192)	zgc:86598 (ENSCARG00000027280)	ENSCARG00000027628	ENSCARG00000027653
Cyprininae_a	ANCESTRAL SPECIES	80			ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.d.a.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b.b	ENSGT01030000234592.A.a.b.c.a.b.a.a	ENSGT00950000183053.D.j	ENSGT00940000158242.j	ENSGT00940000160424.k	ENSGT00950000183008.a.a.a.b.c	ENSGT00560000078630.a.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00940000155107.a.a.b.a ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f.a ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a.c ##24	ENSGT00950000183163.a.a.bb.a ##26	ENSGT00950000182941.a.a.b.e.b.b ##27	ENSGT00390000015257.b.a.b	ENSGT00950000183028.a.b.b.h ##33	ENSGT00950000183031.A.a.a.sd.b #36	ENSGT00390000006486.i.a	ENSGT00940000159791.x	ENSGT00940000156079.c	ENSGT00940000157280.l.b.b	ENSGT00940000154725.j.a.a.a.a.a.a.b	ENSGT00940000154725.j.b.a.a	ENSGT00940000154725.j.a.a.a.a.a.b.a	ENSGT00940000154725.j.a.a.b
Common carp reference	MODERN SPECIES	31	zgc:86598 (ENSCCRG00000002859)	ENSCCRG00000065034	ENSCCRG00000058987	ENSCCRG00000066055	ENSCCRG00000062069	ENSCCRG00000079612	ENSCCRG00000005832	edn1 (ENSCCRG00000072509)	HIVEP1 (ENSCCRG00000064435)	TMEM170B (ENSCCRG00000056870)	nedd9 (ENSCCRG00000043022)	smim13 (ENSCCRG00000039594)	ENSCCRG00000073888	zc3h12ab (ENSCCRG00000043038) ##17	ENSCCRG00000000453	oscp1a (ENSCCRG00000000431) ##22	thrap3b (ENSCCRG00000039036) ##26	map7d1b (ENSCCRG00000045480) ##27	stpg1 (ENSCCRG00000031912)	meaf6 (ENSCCRG00000031916)	fhl3b (ENSCCRG00000047959) ##33	rragcb (ENSCCRG00000024063) #36	ENSCCRG00000066644	TRAPPC9 (ENSCCRG00000039699)	kcnk9 (ENSCCRG00000006675)	ENSCCRG00000070761	ENSCCRG00000075899	FAM135B (ENSCCRG00000032935)	KHDRBS3 (ENSCCRG00000039121)	ENSCCRG00000068801	ENSCCRG00000014824
Golden-line barbel	MODERN SPECIES	693	bop1 (ENSSGRG00000007509)	hsf1 (ENSSGRG00000007504)	zgc:86598 (ENSSGRG00000006080)	ENSSGRG00000006010	ENSSGRG00000005991	ENSSGRG00000005986	ENSSGRG00000005938	ENSSGRG00000005896	edn1 (ENSSGRG00000005893)	HIVEP1 (ENSSGRG00000005892)	TMEM170B (ENSSGRG00000005891)	nedd9 (ENSSGRG00000005890)	smim13 (ENSSGRG00000005888)	ENSSGRG00000005887	zc3h12ab (ENSSGRG00000005885) ##17	oscp1a (ENSSGRG00000005880) ##22	LSM10 (ENSSGRG00000005878)	eva1bb (ENSSGRG00000005877) ##24	thrap3b (ENSSGRG00000005870) ##26	map7d1b (ENSSGRG00000005866) ##27	stpg1 (ENSSGRG00000005863)	meaf6 (ENSSGRG00000005860)	fhl3b (ENSSGRG00000005855) ##33	rragcb (ENSSGRG00000005854) #36	ENSSGRG00000005851	TRAPPC9 (ENSSGRG00000005537)
Cyprininae	ANCESTRAL SPECIES	143	ENSGT00940000163549.c	ENSGT00740000117011	ENSGT01060000248801.a	ENSGT00940000180725	ENSGT00390000004215.a.b.b.c.b.c.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.a.a	ENSGT01030000234592.A.a.b.c.b	ENSGT00950000183053.D.i	ENSGT00940000158242.i	ENSGT00940000160424.l	ENSGT00950000183008.a.a.a.b.d	ENSGT00560000078630.a.a.a	ENSGT00560000078630.b	ENSGT00940000155107.a.a.b.b ##17	ENSGT00390000004808.f.b ##22	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.d ##24	ENSGT00950000183163.a.a.bb.b ##26	ENSGT00950000182941.a.a.b.e.b.a ##27	ENSGT00390000011598.a.a	ENSGT00390000015257.a	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00940000155107.a.a.b.a ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f.a ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a.c ##24	ENSGT00950000183163.a.a.bb.a ##26	ENSGT00950000182941.a.a.b.e.b.b ##27	ENSGT00390000011598.b
Cyprininae_a	ANCESTRAL SPECIES	43	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.d.a.a	ENSGT01060000248801.a	ENSGT00940000180725	ENSGT00390000018422.d	ENSGT00940000161897.b.a.b	ENSGT00940000163549.d	ENSGT00390000004215.a.b.b.c.b.c.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.c	ENSGT01030000234592.A.a.b.c.b	ENSGT00950000183053.D.i	ENSGT00940000158242.i	ENSGT00940000160424.l	ENSGT00950000183008.a.a.a.b.d	ENSGT00560000078630.a.a.a	ENSGT00940000155107.a.a.b.b ##17	ENSGT00390000004808.f.b ##22	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.d ##24	ENSGT00950000183163.a.a.bb.b ##26	ENSGT00950000182941.a.a.b.e.b.a ##27	ENSGT00390000011598.a.a	ENSGT00390000015257.a	ENSGT00390000011598.b	ENSGT00390000015257.b.b	ENSGT00950000183028.a.b.b.g ##33	ENSGT00950000183031.A.a.a.sd.a #36	ENSGT00390000006486.i.b	ENSGT00940000159791.w	ENSGT00940000163557.C	ENSGT00940000162238.a.a	ENSGT00940000156079.d
Golden-line barbel	MODERN SPECIES	431								ENSSGRG00000044416	ENSSGRG00000044415	edn1 (ENSSGRG00000044414)	HIVEP1 (ENSSGRG00000044413)	nedd9 (ENSSGRG00000044409)	smim13 (ENSSGRG00000044408)	zc3h12ab (ENSSGRG00000044406) ##17	ENSSGRG00000044403	oscp1a (ENSSGRG00000044401) ##22	eva1bb (ENSSGRG00000044399) ##24	thrap3b (ENSSGRG00000044395) ##26	map7d1b (ENSSGRG00000044391) ##27	stpg1 (ENSSGRG00000044390)	ENSSGRG00000044389	fhl3b (ENSSGRG00000044387) ##33	rragcb (ENSSGRG00000044382) #36	TRAPPC9 (ENSSGRG00000044348)	kcnk9 (ENSSGRG00000044345)	ENSSGRG00000044341
Common carp reference	MODERN SPECIES	12	scxa (ENSCCRG00000080070)	bop1 (ENSCCRG00000003804)	hsf1 (ENSCCRG00000013317)	si:ch211-80h18.1 (ENSCCRG00000003110)	stm (ENSCCRG00000049053)	si:ch211-133n4.6 (ENSCCRG00000059589)	ENSCCRG00000044535	ENSCCRG00000070436	ENSCCRG00000058333	edn1 (ENSCCRG00000005841)	HIVEP1 (ENSCCRG00000005836)	TMEM170B (ENSCCRG00000005805)	nedd9 (ENSCCRG00000022862)	smim13 (ENSCCRG00000074273)	zc3h12ab (ENSCCRG00000081392) ##17	oscp1a (ENSCCRG00000022844) ##22	eva1bb (ENSCCRG00000038827) ##24	thrap3b (ENSCCRG00000038825) ##26	map7d1b (ENSCCRG00000038821) ##27	stpg1 (ENSCCRG00000031856)	meaf6 (ENSCCRG00000031868)	ENSCCRG00000060628	ENSCCRG00000073470	fhl3b (ENSCCRG00000024062) ##33	rragcb (ENSCCRG00000018138) #36	ENSCCRG00000052992	TRAPPC9 (ENSCCRG00000022158)	kcnk9 (ENSCCRG00000079282)	ENSCCRG00000034730	ENSCCRG00000064829	ENSCCRG00000066020
Zebrafish	MODERN SPECIES	10	ENSDARG00000071216	edn1 (ENSDARG00000036912)	HIVEP1 (ENSDARG00000103658)	TMEM170B (ENSDARG00000071205)	nedd9 (ENSDARG00000089878)	smim13 (ENSDARG00000089204)	ENSDARG00000112881	ENSDARG00000100539	btr18 (ENSDARG00000103618)	ENSDARG00000100450	ENSDARG00000102992	ENSDARG00000102913	ENSDARG00000105283	ENSDARG00000100046	zc3h12ab (ENSDARG00000101034) ##17	oscp1a (ENSDARG00000104403) ##22	LSM10 (ENSDARG00000101222)	eva1bb (ENSDARG00000100698) ##24	thrap3b (ENSDARG00000098228) ##26	ENSDARG00000089402 ##27	ENSDARG00000102533 ##27	ENSDARG00000103395 ##27	ENSDARG00000101490 ##27	map7d1b (ENSDARG00000104701) ##27	ENSDARG00000113654	stpg1 (ENSDARG00000103765)	meaf6 (ENSDARG00000101216)	ENSDARG00000099509	ENSDARG00000102143	btr25 (ENSDARG00000102018)	ENSDARG00000105241
Euteleosteomorpha	ANCESTRAL SPECIES	12	ENSGT00940000167907	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00390000017974.ob ##37	ENSGT01090000260070.C.b	ENSGT00940000154450.tc	ENSGT00940000160519.a.b	ENSGT00940000164147.b	ENSGT00940000156338.b	ENSGT00390000014274	ENSGT00940000157751
Acanthomorphata	ANCESTRAL SPECIES	70	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Euacanthomorphacea	ANCESTRAL SPECIES	24	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Atherinomorphae	ANCESTRAL SPECIES	52													ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
Oryzias	ANCESTRAL SPECIES	23	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b	ENSGT00530000064067	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439.b	ENSGT00940000177439.a	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
Oryzias_a	ANCESTRAL SPECIES	18	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b	ENSGT00530000064067	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439.b	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
Japanese Medaka HdrR	MODERN SPECIES	2	HIVEP1 (ENSORLG00000009270)	edn1 (ENSORLG00000009276)	si:dkeyp-92c9.2 (ENSORLG00000009287)	myo1g (ENSORLG00000009357)	si:ch211-195b13.1 (ENSORLG00000009386)	eya3 (ENSORLG00000009396)	ENSORLG00000009399	xkr8.3 (ENSORLG00000009411)	ENSORLG00000028783	ENSORLG00000009430	msto1 (ENSORLG00000009462)	smim13 (ENSORLG00000023911)	ENSORLG00000009473 ##17	ENSORLG00000027497	ENSORLG00000028537	oscp1a (ENSORLG00000009500) ##22	ENSORLG00000028326	LSM10 (ENSORLG00000009504)	eva1bb (ENSORLG00000009511) ##24	thrap3b (ENSORLG00000009543) ##26	map7d1b (ENSORLG00000009561) ##27	meaf6 (ENSORLG00000021858)	rragcb (ENSORLG00000009645) #36	ppt1 (ENSORLG00000009676)	cap1 (ENSORLG00000009709)	KIAA0319L (ENSORLG00000009728)	NCDN (ENSORLG00000009735)	tfap2e (ENSORLG00000022744)	psmb2 (ENSORLG00000009748)	cdca5 (ENSORLG00000009754)	ENSORLG00000027383
Chinese medaka	MODERN SPECIES	659	TMEM170B (ENSOSIG00000019677)	HIVEP1 (ENSOSIG00000019686)	edn1 (ENSOSIG00000019690)	si:dkeyp-92c9.2 (ENSOSIG00000019691)	myo1g (ENSOSIG00000019767)	eya3 (ENSOSIG00000021665)	ENSOSIG00000021694	ENSOSIG00000021696	ENSOSIG00000021699	msto1 (ENSOSIG00000021707)	smim13 (ENSOSIG00000021709)	zc3h12ab (ENSOSIG00000021718) ##17	ENSOSIG00000021721	ENSOSIG00000021725	ENSOSIG00000021733	oscp1a (ENSOSIG00000021743) ##22	LSM10 (ENSOSIG00000021747)	eva1bb (ENSOSIG00000021751) ##24	thrap3b (ENSOSIG00000021772) ##26	ENSOSIG00000021805	meaf6 (ENSOSIG00000021815)	fhl3b (ENSOSIG00000021818) ##33	rragcb (ENSOSIG00000021848) #36	ppt1 (ENSOSIG00000021993)	cap1 (ENSOSIG00000022267)	KIAA0319L (ENSOSIG00000022341)	NCDN (ENSOSIG00000022696)	tfap2e (ENSOSIG00000022704)	psmb2 (ENSOSIG00000022707)	ENSOSIG00000022708	ENSOSIG00000022710
Oryzias_b	ANCESTRAL SPECIES	27	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e	ENSGT00940000156213.r	ENSGT00530000064067	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439.b	ENSGT00940000177439.a	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00950000183031.A.a.a #36	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Indian medaka	MODERN SPECIES	3	edn1 (ENSOMEG00000022459)	si:dkeyp-92c9.2 (ENSOMEG00000022471)	myo1g (ENSOMEG00000000591)	ENSOMEG00000022516	si:ch211-195b13.1 (ENSOMEG00000022573)	eya3 (ENSOMEG00000005472)	ENSOMEG00000005502	xkr8.3 (ENSOMEG00000005514)	srsf4 (ENSOMEG00000005541)	msto1 (ENSOMEG00000005580)	smim13 (ENSOMEG00000000693)	zc3h12ab (ENSOMEG00000005602) ##17	ENSOMEG00000005607	ENSOMEG00000005619	ENSOMEG00000005633	oscp1a (ENSOMEG00000005663) ##22	ENSOMEG00000005680	eva1bb (ENSOMEG00000005691) ##24	thrap3b (ENSOMEG00000005716) ##26	map7d1b (ENSOMEG00000005865) ##27	meaf6 (ENSOMEG00000005907)	fhl3b (ENSOMEG00000005944) ##33	rragcb (ENSOMEG00000000957) #36	ppt1 (ENSOMEG00000006005)	cap1 (ENSOMEG00000006049)	KIAA0319L (ENSOMEG00000006068)	NCDN (ENSOMEG00000006095)	tfap2e (ENSOMEG00000000143)	ENSOMEG00000006212	psmb2 (ENSOMEG00000006246)	cdca5 (ENSOMEG00000006255)
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000003004	edn1 (ENSOJAG00000002995)	si:dkeyp-92c9.2 (ENSOJAG00000002984)	myo1g (ENSOJAG00000002719)	si:ch211-195b13.1 (ENSOJAG00000002602)	eya3 (ENSOJAG00000001877)	ENSOJAG00000001723	xkr8.3 (ENSOJAG00000001703)	ENSOJAG00000001693	srsf4 (ENSOJAG00000001676)	msto1 (ENSOJAG00000001662)	smim13 (ENSOJAG00000001654)	zc3h12ab (ENSOJAG00000001643) ##17	ENSOJAG00000001634	ENSOJAG00000001622	oscp1a (ENSOJAG00000018623) ##22	LSM10 (ENSOJAG00000018606)	eva1bb (ENSOJAG00000018573) ##24	thrap3b (ENSOJAG00000018559) ##26	map7d1b (ENSOJAG00000018478) ##27	meaf6 (ENSOJAG00000018430)	fhl3b (ENSOJAG00000018420) ##33	rragcb (ENSOJAG00000018406) #36	ENSOJAG00000018375	cap1 (ENSOJAG00000018135)	KIAA0319L (ENSOJAG00000017300)	tfap2e (ENSOJAG00000017207)	psmb2 (ENSOJAG00000017149)	ENSOJAG00000017111	EIF2C4 (ENSOJAG00000015300)	ENSOJAG00000015245
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000157594	ENSGT00950000183145.C	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00530000064067	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Cyprinodontoidei	ANCESTRAL SPECIES	60											ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
NAME_4	ANCESTRAL SPECIES	178											ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
Mummichog	MODERN SPECIES	1085															ENSFHEG00000001064	oscp1a (ENSFHEG00000001061) ##22	LSM10 (ENSFHEG00000001058)	ENSFHEG00000001054	thrap3b (ENSFHEG00000001051) ##26	map7d1b (ENSFHEG00000001044) ##27	meaf6 (ENSFHEG00000001037)
Sheepshead minnow	MODERN SPECIES	1391											eya3 (ENSCVAG00000001500)	si:ch211-195b13.1 (ENSCVAG00000001510)	smim13 (ENSCVAG00000001513)	zc3h12ab (ENSCVAG00000001516) ##17	ENSCVAG00000001517	oscp1a (ENSCVAG00000001534) ##22	LSM10 (ENSCVAG00000001536)	eva1bb (ENSCVAG00000001541) ##24	thrap3b (ENSCVAG00000001547) ##26	ENSCVAG00000001553
Poeciliinae	ANCESTRAL SPECIES	24	ENSGT00940000157594	ENSGT00950000183145.C	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00530000064067	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f.o	ENSGT00940000155107.a.a.b ##17	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
Poecilia	ANCESTRAL SPECIES	73					ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00530000064067	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f.o	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT00940000170176	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
NAME_6	ANCESTRAL SPECIES	199												ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT00940000170176	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
Amazon molly	MODERN SPECIES	658												si:ch211-195b13.1 (ENSPFOG00000000288)	eya3 (ENSPFOG00000000356)	ENSPFOG00000000423	ENSPFOG00000020489	oscp1a (ENSPFOG00000000446) ##22	LSM10 (ENSPFOG00000020490)	eva1bb (ENSPFOG00000000508) ##24	thrap3b (ENSPFOG00000000525) ##26	map7d1b (ENSPFOG00000000581) ##27	meaf6 (ENSPFOG00000000680)	fhl3b (ENSPFOG00000000748) ##33	rragcb (ENSPFOG00000000814) #36	ppt1 (ENSPFOG00000000883)	cap1 (ENSPFOG00000001012)	KIAA0319L (ENSPFOG00000001224)	NCDN (ENSPFOG00000001489)	tfap2e (ENSPFOG00000001600)	psmb2 (ENSPFOG00000001718)	cdca5 (ENSPFOG00000001777)	ENSPFOG00000024371
Sailfin molly	MODERN SPECIES	1900										mgat4b (ENSPLAG00000016768)	ENSPLAG00000016740	si:ch211-195b13.1 (ENSPLAG00000016719)	eya3 (ENSPLAG00000016687)	ENSPLAG00000016657	ENSPLAG00000016619	oscp1a (ENSPLAG00000016596) ##22	LSM10 (ENSPLAG00000016537)	eva1bb (ENSPLAG00000016531) ##24	thrap3b (ENSPLAG00000016521) ##26
Guppy	MODERN SPECIES	441	c19h1orf109 (ENSPREG00000009487)	cdca8 (ENSPREG00000009494)	ENSPREG00000009527	ints8 (ENSPREG00000009537)	ENSPREG00000009564	msto1 (ENSPREG00000009596)	srsf4 (ENSPREG00000009639)	xkr8.3 (ENSPREG00000009727)	si:ch211-195b13.1 (ENSPREG00000009750)	XKR8 (ENSPREG00000009810)	ENSPREG00000009817	smim13 (ENSPREG00000009828)	eya3 (ENSPREG00000009854)	ENSPREG00000009866	ENSPREG00000009875	oscp1a (ENSPREG00000009882) ##22	LSM10 (ENSPREG00000009899)	ENSPREG00000009908	thrap3b (ENSPREG00000009927) ##26	meaf6 (ENSPREG00000009968)	fhl3b (ENSPREG00000010000) ##33	rragcb (ENSPREG00000010016) #36	ppt1 (ENSPREG00000010053)	cap1 (ENSPREG00000010113)	KIAA0319L (ENSPREG00000010131)	NCDN (ENSPREG00000010167)	tfap2e (ENSPREG00000010182)	psmb2 (ENSPREG00000010199)	cdca5 (ENSPREG00000010215)	ENSPREG00000010216	CLSPN (ENSPREG00000010244)
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	4	ints8 (ENSXMAG00000005568)	ENSXMAG00000005562	msto1 (ENSXMAG00000005548)	srsf4 (ENSXMAG00000005545)	ENSXMAG00000021549	xkr8.3 (ENSXMAG00000005543)	XKR8 (ENSXMAG00000021722)	ENSXMAG00000029667	zc3h12ab (ENSXMAG00000025043) ##17	smim13 (ENSXMAG00000019893)	si:ch211-195b13.1 (ENSXMAG00000017993)	eya3 (ENSXMAG00000017972)	ENSXMAG00000017971	ENSXMAG00000028082	ENSXMAG00000028561 ##22	ENSXMAG00000004775 ##22	LSM10 (ENSXMAG00000019963)	eva1bb (ENSXMAG00000017970) ##24	thrap3b (ENSXMAG00000017962) ##26	map7d1b (ENSXMAG00000003534) ##27	meaf6 (ENSXMAG00000003525)	fhl3b (ENSXMAG00000003516) ##33	rragcb (ENSXMAG00000013223) #36	ppt1 (ENSXMAG00000003488)	cap1 (ENSXMAG00000028529)	KIAA0319L (ENSXMAG00000003454)	NCDN (ENSXMAG00000027698)	tfap2e (ENSXMAG00000003446)	psmb2 (ENSXMAG00000016616)	cdca5 (ENSXMAG00000022429)	ENSXMAG00000021351
Platyfish	MODERN SPECIES	4	ENSXMAG00000027303	ints8 (ENSXMAG00000005568)	ENSXMAG00000005562	msto1 (ENSXMAG00000005548)	srsf4 (ENSXMAG00000005545)	ENSXMAG00000021549	xkr8.3 (ENSXMAG00000005543)	XKR8 (ENSXMAG00000021722)	ENSXMAG00000029667	zc3h12ab (ENSXMAG00000025043) ##17	smim13 (ENSXMAG00000019893)	si:ch211-195b13.1 (ENSXMAG00000017993)	eya3 (ENSXMAG00000017972)	ENSXMAG00000017971	ENSXMAG00000028082	ENSXMAG00000028561 ##22	ENSXMAG00000004775 ##22	LSM10 (ENSXMAG00000019963)	eva1bb (ENSXMAG00000017970) ##24	thrap3b (ENSXMAG00000017962) ##26	map7d1b (ENSXMAG00000003534) ##27	meaf6 (ENSXMAG00000003525)	fhl3b (ENSXMAG00000003516) ##33	rragcb (ENSXMAG00000013223) #36	ppt1 (ENSXMAG00000003488)	cap1 (ENSXMAG00000028529)	KIAA0319L (ENSXMAG00000003454)	NCDN (ENSXMAG00000027698)	tfap2e (ENSXMAG00000003446)	psmb2 (ENSXMAG00000016616)	cdca5 (ENSXMAG00000022429)
Aplocheiloidei	ANCESTRAL SPECIES	129																ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Mangrove rivulus	MODERN SPECIES	511																oscp1a (ENSKMAG00000012172) ##22	ENSKMAG00000012154	LSM10 (ENSKMAG00000012143)	eva1bb (ENSKMAG00000012127) ##24	thrap3b (ENSKMAG00000012105) ##26	ENSKMAG00000012078
Turquoise killifish	MODERN SPECIES	1316																OSCP1 (ENSNFUG00015011544) ##22	LSM10 (ENSNFUG00015011534)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000156213.q.b	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Cichlidae	ANCESTRAL SPECIES	7	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f.q	ENSGT00940000178710	ENSGT01090000260093.b.f.r	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT01090000260093.b.f.q.c.a	ENSGT01090000260093.b.f.q.c.b	ENSGT01090000260093.b.f.r	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00940000178420	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b.j	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT01090000260093.b.f.r	ENSGT00940000154393.s.b.b.a.b	ENSGT00940000163472.e.b.e.a.b.a	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00940000178420	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b.j	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Haplochromini	ANCESTRAL SPECIES	5	ENSGT01090000260093.b.f.r	ENSGT00940000154393.s.b.b.a.b	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00940000178420	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT01070000254348	ENSGT01100000263769.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Burton s mouthbrooder	MODERN SPECIES	524														ENSHBUG00000001743	ENSHBUG00000001735	oscp1a (ENSHBUG00000001728) ##22	LSM10 (ENSHBUG00000001722)	eva1bb (ENSHBUG00000001719) ##24	thrap3b (ENSHBUG00000001708) ##26	map7d1b (ENSHBUG00000001680) ##27	stpg1 (ENSHBUG00000001653)	meaf6 (ENSHBUG00000001648)	fhl3b (ENSHBUG00000001636) ##33	rragcb (ENSHBUG00000001632) #36	ppt1 (ENSHBUG00000001625)	cap1 (ENSHBUG00000001615)	KIAA0319L (ENSHBUG00000001599)	NCDN (ENSHBUG00000001587)	tfap2e (ENSHBUG00000001580)	psmb2 (ENSHBUG00000001568)	cdca5 (ENSHBUG00000001559)
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT01090000260093.b.f.r	ENSGT00940000154393.s.b.b.a.b	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00940000178420	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT01070000254348	ENSGT01100000263769.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
P. nyererei	MODERN SPECIES	388	eya3 (ENSPNYG00000003636)	si:ch211-195b13.1 (ENSPNYG00000003593)	myo1g (ENSPNYG00000003483)	si:dkeyp-92c9.2 (ENSPNYG00000003471)	edn1 (ENSPNYG00000003412)	HIVEP1 (ENSPNYG00000003371)	TMEM170B (ENSPNYG00000003350)	ENSPNYG00000003341	nedd9 (ENSPNYG00000003335)	smim13 (ENSPNYG00000003320)	zc3h12ab (ENSPNYG00000003297) ##17	ENSPNYG00000003289	ENSPNYG00000003267	ENSPNYG00000003253	ENSPNYG00000003238	oscp1a (ENSPNYG00000003173) ##22	LSM10 (ENSPNYG00000003138)	eva1bb (ENSPNYG00000003106) ##24	thrap3b (ENSPNYG00000003062) ##26	map7d1b (ENSPNYG00000003016) ##27	stpg1 (ENSPNYG00000002988)	meaf6 (ENSPNYG00000002859)	fhl3b (ENSPNYG00000002809) ##33	rragcb (ENSPNYG00000002775) #36	ppt1 (ENSPNYG00000002732)	cap1 (ENSPNYG00000002687)	KIAA0319L (ENSPNYG00000002650)	NCDN (ENSPNYG00000002533)	tfap2e (ENSPNYG00000002494)	psmb2 (ENSPNYG00000002470)	cdca5 (ENSPNYG00000002457)
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT01070000254348.b	ENSGT01070000254348.a	ENSGT01060000249788.a	ENSGT00390000010118.c.a.b.i.a	ENSGT01090000260364.b.b.a	ENSGT00390000010118.c.a.b.j	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Zebra mbuna	MODERN SPECIES	1104	HIVEP1 (ENSMZEG00005026281)	edn1 (ENSMZEG00005026283)	ENSMZEG00005026284	ENSMZEG00005026285	smim13 (ENSMZEG00005026286)	zc3h12ab (ENSMZEG00005026287) ##17	ENSMZEG00005026289	ENSMZEG00005026291	ENSMZEG00005026293	ENSMZEG00005026294	ENSMZEG00005026296	ENSMZEG00005026298	ENSMZEG00005026299	ENSMZEG00005026301	ENSMZEG00005026303	oscp1a (ENSMZEG00005026304) ##22	LSM10 (ENSMZEG00005026307)	eva1bb (ENSMZEG00005026308) ##24	thrap3b (ENSMZEG00005026309) ##26	map7d1b (ENSMZEG00005026312) ##27	stpg1 (ENSMZEG00005026316)	meaf6 (ENSMZEG00005026320)	fhl3b (ENSMZEG00005026323) ##33	rragcb (ENSMZEG00005026324) #36	ppt1 (ENSMZEG00005026327)	cap1 (ENSMZEG00005026329)	KIAA0319L (ENSMZEG00005026332)	NCDN (ENSMZEG00005026335)	tfap2e (ENSMZEG00005026336)	psmb2 (ENSMZEG00005026338)	ENSMZEG00005026340
Eastern happy	MODERN SPECIES	13	HIVEP1 (ENSACLG00000004264)	TMEM170B (ENSACLG00000004294)	nedd9 (ENSACLG00000004452)	ENSACLG00000004476	smim13 (ENSACLG00000004481)	zc3h12ab (ENSACLG00000004488) ##17	ENSACLG00000004502	ENSACLG00000004517	ENSACLG00000004542	ENSACLG00000004607	ENSACLG00000004617	ENSACLG00000004641	ENSACLG00000004658	ENSACLG00000004674	ENSACLG00000004680	oscp1a (ENSACLG00000004687) ##22	LSM10 (ENSACLG00000004728)	eva1bb (ENSACLG00000004750) ##24	thrap3b (ENSACLG00000004763) ##26	map7d1b (ENSACLG00000004864) ##27	stpg1 (ENSACLG00000004902)	meaf6 (ENSACLG00000004907)	fhl3b (ENSACLG00000004926) ##33	rragcb (ENSACLG00000004938) #36	ppt1 (ENSACLG00000004957)	cap1 (ENSACLG00000004977)	KIAA0319L (ENSACLG00000004999)	NCDN (ENSACLG00000005026)	tfap2e (ENSACLG00000005058)	psmb2 (ENSACLG00000005086)	ENSACLG00000005115
Lyretail cichlid	MODERN SPECIES	322	ENSNBRG00000014719	ENSNBRG00000014712	ENSNBRG00000014701	eya3 (ENSNBRG00000014682)	si:ch211-195b13.1 (ENSNBRG00000014644)	myo1g (ENSNBRG00000014579)	si:dkeyp-92c9.2 (ENSNBRG00000014568)	edn1 (ENSNBRG00000014550)	HIVEP1 (ENSNBRG00000014508)	TMEM170B (ENSNBRG00000014493)	ENSNBRG00000014486	nedd9 (ENSNBRG00000014432)	smim13 (ENSNBRG00000014425)	zc3h12ab (ENSNBRG00000014376) ##17	ENSNBRG00000014359	oscp1a (ENSNBRG00000014319) ##22	LSM10 (ENSNBRG00000014306)	eva1bb (ENSNBRG00000014294) ##24	thrap3b (ENSNBRG00000014237) ##26	map7d1b (ENSNBRG00000014183) ##27	stpg1 (ENSNBRG00000014134)	meaf6 (ENSNBRG00000014080)	fhl3b (ENSNBRG00000014055) ##33	rragcb (ENSNBRG00000014036) #36	ppt1 (ENSNBRG00000014017)	cap1 (ENSNBRG00000013979)	ENSNBRG00000013921	ENSNBRG00000013858	tfap2e (ENSNBRG00000013819)	psmb2 (ENSNBRG00000013797)	ENSNBRG00000013760
Nile tilapia	MODERN SPECIES	13	myo1g (ENSONIG00000013698)	si:dkeyp-92c9.2 (ENSONIG00000040868)	edn1 (ENSONIG00000033264)	HIVEP1 (ENSONIG00000013692)	tmem170b (ENSONIG00000027709)	ENSONIG00000027700	nedd9 (ENSONIG00000013688)	smim13 (ENSONIG00000042839)	zc3h12ab (ENSONIG00000013685) ##17	ENSONIG00000035261	ENSONIG00000032847	ENSONIG00000028012	ENSONIG00000013684	ENSONIG00000039124	ENSONIG00000032030	oscp1a (ENSONIG00000013682) ##22	LSM10 (ENSONIG00000020904)	eva1bb (ENSONIG00000013681) ##24	thrap3b (ENSONIG00000013673) ##26	map7d1b (ENSONIG00000013670) ##27	stpg1 (ENSONIG00000013668)	meaf6 (ENSONIG00000013665)	fhl3b (ENSONIG00000016304) ##33	rragcb (ENSONIG00000013658) #36	ppt1 (ENSONIG00000013654)	cap1 (ENSONIG00000013650)	KIAA0319L (ENSONIG00000013646)	NCDN (ENSONIG00000013638)	tfap2e (ENSONIG00000013632)	psmb2 (ENSONIG00000013628)	cdca5 (ENSONIG00000013627)
Midas cichlid	MODERN SPECIES	1145													ENSACIG00000015475	ENSACIG00000015467	ENSACIG00000015456	oscp1a (ENSACIG00000015426) ##22	LSM10 (ENSACIG00000015420)	eva1bb (ENSACIG00000015385) ##24	thrap3b (ENSACIG00000015331) ##26	map7d1b (ENSACIG00000015299) ##27	stpg1 (ENSACIG00000015255)	meaf6 (ENSACIG00000015202)	fhl3b (ENSACIG00000015186) ##33	rragcb (ENSACIG00000015168) #36	ppt1 (ENSACIG00000015133)	cap1 (ENSACIG00000015108)	KIAA0319L (ENSACIG00000015054)	ENSACIG00000015036	tfap2e (ENSACIG00000015015)	psmb2 (ENSACIG00000014995)	cdca5 (ENSACIG00000014987)
Pomacentridae	ANCESTRAL SPECIES	95	ENSGT00940000156213.q.b	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.u	ENSGT00390000010028	ENSGT00940000169005
Bicolor damselfish	MODERN SPECIES	2608															ENSSPAG00000009181	oscp1a (ENSSPAG00000009188) ##22	LSM10 (ENSSPAG00000009229)	eva1bb (ENSSPAG00000009239) ##24	thrap3b (ENSSPAG00000009248) ##26
Pomacentridae_A	ANCESTRAL SPECIES	132									ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b.c ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.u	ENSGT00390000010028	ENSGT00940000169005	ENSGT00390000012738
Spiny chromis	MODERN SPECIES	2477													nedd9 (ENSAPOG00000018875)	smim13 (ENSAPOG00000018834)	zc3h12ab (ENSAPOG00000018821) ##17	ENSAPOG00000018789 ##22
Amphiprion	ANCESTRAL SPECIES	158									ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364.e	ENSGT00510000048364.f	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b.c ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT01000000216251	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.u	ENSGT00390000010028
Orange clownfish	MODERN SPECIES	8	si:dkeyp-92c9.2 (ENSAPEG00000021228)	lipea (ENSAPEG00000021242)	ENSAPEG00000021368	tomm40l (ENSAPEG00000021410)	apoa4a (ENSAPEG00000021446)	apoa4a (ENSAPEG00000021487)	apoea (ENSAPEG00000021599)	msto1 (ENSAPEG00000021611)	edn1 (ENSAPEG00000021668)	HIVEP1 (ENSAPEG00000021694)	TMEM170B (ENSAPEG00000021718)	nedd9 (ENSAPEG00000021755)	smim13 (ENSAPEG00000021784)	zc3h12ab (ENSAPEG00000021795) ##17	ENSAPEG00000021810	oscp1a (ENSAPEG00000021818) ##22	LSM10 (ENSAPEG00000021845)	LSM10 (ENSAPEG00000021851)	thrap3b (ENSAPEG00000021862) ##26	ENSAPEG00000021890	eva1bb (ENSAPEG00000021900) ##24	ENSAPEG00000021910 ##27	stpg1 (ENSAPEG00000021982)	meaf6 (ENSAPEG00000022021)	fhl3b (ENSAPEG00000022036) ##33	ENSAPEG00000022058	rragcb (ENSAPEG00000022074) #36	ppt1 (ENSAPEG00000022102)	cap1 (ENSAPEG00000022140)	KIAA0319L (ENSAPEG00000022186)	ENSAPEG00000022202
Clown anemonefish	MODERN SPECIES	1402														zc3h12ab (ENSAOCG00000014326) ##17	ENSAOCG00000014304	oscp1a (ENSAOCG00000014297) ##22	CDH22 (ENSAOCG00000014267)
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00390000004808.f ##22
Tetraodon	MODERN SPECIES	16				myo1g (ENSTNIG00000004555)	si:ch211-195b13.1 (ENSTNIG00000002279)	eya3 (ENSTNIG00000008190)	xkr8.3 (ENSTNIG00000003808)	srsf4 (ENSTNIG00000000115)	ENSTNIG00000005576	si:ch211-195b13.1 (ENSTNIG00000005575)	eya3 (ENSTNIG00000000209)	xkr8.3 (ENSTNIG00000005574)	srsf4 (ENSTNIG00000005573)	msto1 (ENSTNIG00000005572)	zc3h12ab (ENSTNIG00000001274) ##17	oscp1a (ENSTNIG00000019817) ##22	eva1bb (ENSTNIG00000004581) ##24	thrap3b (ENSTNIG00000004582) ##26	map7d1b (ENSTNIG00000004583) ##27	meaf6 (ENSTNIG00000004584)	fhl3b (ENSTNIG00000004585) ##33	rragcb (ENSTNIG00000004586) #36	ppt1 (ENSTNIG00000004587)	cap1 (ENSTNIG00000004588)	KIAA0319L (ENSTNIG00000004589)	NCDN (ENSTNIG00000004590)	ENSTNIG00000004591	CLSPN (ENSTNIG00000006330)	ago4 (ENSTNIG00000006331)	ENSTNIG00000006332	ENSTNIG00000006333
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Ballan wrasse	MODERN SPECIES	178	ENSLBEG00000017163	xkr8.3 (ENSLBEG00000017172)	ENSLBEG00000017191	eya3 (ENSLBEG00000017242)	si:ch211-195b13.1 (ENSLBEG00000017306)	myo1g (ENSLBEG00000017408)	si:dkeyp-92c9.2 (ENSLBEG00000017467)	edn1 (ENSLBEG00000017479)	HIVEP1 (ENSLBEG00000017512)	TMEM170B (ENSLBEG00000017533)	nedd9 (ENSLBEG00000017548)	smim13 (ENSLBEG00000017560)	zc3h12ab (ENSLBEG00000017593) ##17	ENSLBEG00000017654	ENSLBEG00000017687	oscp1a (ENSLBEG00000017707) ##22	ENSLBEG00000017744	LSM10 (ENSLBEG00000017764)	eva1bb (ENSLBEG00000017790) ##24	thrap3b (ENSLBEG00000017803) ##26	map7d1b (ENSLBEG00000017860) ##27	stpg1 (ENSLBEG00000017959)	meaf6 (ENSLBEG00000018002)	fhl3b (ENSLBEG00000018044) ##33	rragcb (ENSLBEG00000018067) #36	ppt1 (ENSLBEG00000018087)	cap1 (ENSLBEG00000018203)
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Perciformes	ANCESTRAL SPECIES	11	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00940000165835.b	ENSGT00530000064067	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Lumpfish	MODERN SPECIES	2	srsf4 (ENSCLMG00005020887)	xkr8.3 (ENSCLMG00005020889)	ENSCLMG00005020890	eya3 (ENSCLMG00005020894)	si:ch211-195b13.1 (ENSCLMG00005020929)	myo1g (ENSCLMG00005021011)	si:dkeyp-92c9.2 (ENSCLMG00005022104)	edn1 (ENSCLMG00005022105)	ENSCLMG00005022106	ENSCLMG00005022107	HIVEP1 (ENSCLMG00005022108)	TMEM170B (ENSCLMG00005022109)	nedd9 (ENSCLMG00005022110)	smim13 (ENSCLMG00005022112)	zc3h12ab (ENSCLMG00005022113) ##17	oscp1a (ENSCLMG00005022114) ##22	LSM10 (ENSCLMG00005022117)	eva1bb (ENSCLMG00005022118) ##24	thrap3b (ENSCLMG00005022119) ##26	map7d1b (ENSCLMG00005022121) ##27	stpg1 (ENSCLMG00005022122)	meaf6 (ENSCLMG00005022124)	fhl3b (ENSCLMG00005022125) ##33	rragcb (ENSCLMG00005022126) #36	ppt1 (ENSCLMG00005022130)	cap1 (ENSCLMG00005022185)	KIAA0319L (ENSCLMG00005022250)	NCDN (ENSCLMG00005022416)	tfap2e (ENSCLMG00005022419)	psmb2 (ENSCLMG00005022422)	cdca5 (ENSCLMG00005022429)
Stickleback	MODERN SPECIES	9	ENSGACG00000002413	msto1 (ENSGACG00000002391)	srsf4 (ENSGACG00000002389)	xkr8.3 (ENSGACG00000002383)	ENSGACG00000002382	eya3 (ENSGACG00000002372)	si:ch211-195b13.1 (ENSGACG00000002364)	ENSGACG00000002361	myo1g (ENSGACG00000002357)	si:dkeyp-92c9.2 (ENSGACG00000002355)	HIVEP1 (ENSGACG00000002352)	TMEM170B (ENSGACG00000002349)	nedd9 (ENSGACG00000002344)	zc3h12ab (ENSGACG00000002341) ##17	ENSGACG00000002336	oscp1a (ENSGACG00000002331) ##22	LSM10 (ENSGACG00000002329)	eva1bb (ENSGACG00000002327) ##24	thrap3b (ENSGACG00000002319) ##26	gdf6b (ENSGACG00000002318)	ENSGACG00000002315	CCNE2 (ENSGACG00000002312)	ints8 (ENSGACG00000002293)	ENSGACG00000002289	ENSGACG00000002285	DPY19L4 (ENSGACG00000002271)	tekt1 (ENSGACG00000002270)	KDM1B (ENSGACG00000002257)	ENSGACG00000002253	slc9a1b (ENSGACG00000002247)	ENSGACG00000002234
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00950000183031.A.a.a #36	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028
Channel bull blenny	MODERN SPECIES	2	ENSCGOG00000009980	ENSCGOG00000009973	ENSCGOG00000009972	ENSCGOG00000009970	ENSCGOG00000009966	ENSCGOG00000009965	ENSCGOG00000009936	ENSCGOG00000009931	ENSCGOG00000009927	ENSCGOG00000009908	TMEM170B (ENSCGOG00000009902)	nedd9 (ENSCGOG00000009901)	smim13 (ENSCGOG00000009899)	zc3h12ab (ENSCGOG00000009896) ##17	ENSCGOG00000009889	oscp1a (ENSCGOG00000009863) ##22	LSM10 (ENSCGOG00000009858)	eva1bb (ENSCGOG00000009852) ##24	thrap3b (ENSCGOG00000009838) ##26	map7d1b (ENSCGOG00000009797) ##27	stpg1 (ENSCGOG00000009789)	meaf6 (ENSCGOG00000009716)	fhl3b (ENSCGOG00000009706) ##33	rragcb (ENSCGOG00000009623) #36	ppt1 (ENSCGOG00000009478)	cap1 (ENSCGOG00000009184)	KIAA0319L (ENSCGOG00000008351)	NCDN (ENSCGOG00000008308)	tfap2e (ENSCGOG00000008293)	psmb2 (ENSCGOG00000008253)	cdca5 (ENSCGOG00000008246)
Pike perch	MODERN SPECIES	13	xkr8.3 (ENSSLUG00000002071)	ENSSLUG00000002075	eya3 (ENSSLUG00000002128)	si:ch211-195b13.1 (ENSSLUG00000002579)	myo1g (ENSSLUG00000004127)	si:dkeyp-92c9.2 (ENSSLUG00000004255)	edn1 (ENSSLUG00000004261)	HIVEP1 (ENSSLUG00000004271)	TMEM170B (ENSSLUG00000004281)	nedd9 (ENSSLUG00000004286)	smim13 (ENSSLUG00000004292)	zc3h12ab (ENSSLUG00000004297) ##17	ENSSLUG00000004301	ENSSLUG00000004309	ENSSLUG00000004314	oscp1a (ENSSLUG00000004327) ##22	LSM10 (ENSSLUG00000004403)	eva1bb (ENSSLUG00000004412) ##24	thrap3b (ENSSLUG00000004422) ##26	map7d1b (ENSSLUG00000004454) ##27	stpg1 (ENSSLUG00000004518)	meaf6 (ENSSLUG00000004526)	fhl3b (ENSSLUG00000004540) ##33	rragcb (ENSSLUG00000004552) #36	ppt1 (ENSSLUG00000004585)	cap1 (ENSSLUG00000004853)	KIAA0319L (ENSSLUG00000004935)	NCDN (ENSSLUG00000005782)	tfap2e (ENSSLUG00000005788)	psmb2 (ENSSLUG00000005805)	cdca5 (ENSSLUG00000005818)
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000012738	ENSGT00940000158729
Gilthead seabream	MODERN SPECIES	17	apoea (ENSSAUG00010027483)	msto1 (ENSSAUG00010027484)	ENSSAUG00010027486	xkr8.3 (ENSSAUG00010027487)	ENSSAUG00010027488	eya3 (ENSSAUG00010027490)	si:ch211-195b13.1 (ENSSAUG00010027518)	myo1g (ENSSAUG00010003283)	si:dkeyp-92c9.2 (ENSSAUG00010004322)	edn1 (ENSSAUG00010004330)	HIVEP1 (ENSSAUG00010004340)	TMEM170B (ENSSAUG00010004349)	nedd9 (ENSSAUG00010004355)	smim13 (ENSSAUG00010004360)	zc3h12ab (ENSSAUG00010004363) ##17	oscp1a (ENSSAUG00010004367) ##22	ENSSAUG00010004375	LSM10 (ENSSAUG00010004379)	eva1bb (ENSSAUG00010004385) ##24	thrap3b (ENSSAUG00010004395) ##26	map7d1b (ENSSAUG00010004404) ##27	stpg1 (ENSSAUG00010004417)	ppt1 (ENSSAUG00010004438)	fhl3b (ENSSAUG00010004524) ##33	rragcb (ENSSAUG00010004527) #36	cap1 (ENSSAUG00010004535)	KIAA0319L (ENSSAUG00010005044)	NCDN (ENSSAUG00010008396)	tfap2e (ENSSAUG00010008399)	psmb2 (ENSSAUG00010008400)	cdca5 (ENSSAUG00010008401)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00950000183031.A.a.a #36	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000012738
Large yellow croaker	MODERN SPECIES	484	SHE (ENSLCRG00005020108)	pygo2 (ENSLCRG00005020109)	cgnb (ENSLCRG00005020110)	ENSLCRG00005020116	C1orf43 (ENSLCRG00005020121)	ubap2l (ENSLCRG00005020158)	hax1 (ENSLCRG00005020218)	aqp10b (ENSLCRG00005020225)	znf687b (ENSLCRG00005020231)	psmd4a (ENSLCRG00005020248)	pip5k1aa (ENSLCRG00005020307)	nedd9 (ENSLCRG00005020348)	smim13 (ENSLCRG00005020351)	zc3h12ab (ENSLCRG00005020357) ##17	ENSLCRG00005020362	oscp1a (ENSLCRG00005020381) ##22	LSM10 (ENSLCRG00005020471)	eva1bb (ENSLCRG00005020472) ##24	thrap3b (ENSLCRG00005020473) ##26	map7d1b (ENSLCRG00005020478) ##27	stpg1 (ENSLCRG00005000640)	meaf6 (ENSLCRG00005000657)	fhl3b (ENSLCRG00005000684) ##33	rragcb (ENSLCRG00005000695) #36	ppt1 (ENSLCRG00005000758)	cap1 (ENSLCRG00005001693)	KIAA0319L (ENSLCRG00005002018)	ENSLCRG00005004848	NCDN (ENSLCRG00005004849)	tfap2e (ENSLCRG00005004851)	psmb2 (ENSLCRG00005004853)
European seabass	MODERN SPECIES	22	ENSDLAG00005007472	ENSDLAG00005016221	xkr8.3 (ENSDLAG00005032214)	ENSDLAG00005032813	eya3 (ENSDLAG00005005939)	si:ch211-195b13.1 (ENSDLAG00005033105)	myo1g (ENSDLAG00005003113)	si:dkeyp-92c9.2 (ENSDLAG00005030433)	edn1 (ENSDLAG00005002998)	HIVEP1 (ENSDLAG00005002969)	TMEM170B (ENSDLAG00005030210)	nedd9 (ENSDLAG00005002936)	smim13 (ENSDLAG00005002917)	zc3h12ab (ENSDLAG00005002900) ##17	ENSDLAG00005035131	oscp1a (ENSDLAG00005002331) ##22	LSM10 (ENSDLAG00005002297)	eva1bb (ENSDLAG00005002280) ##24	thrap3b (ENSDLAG00005018774) ##26	map7d1b (ENSDLAG00005018751) ##27	stpg1 (ENSDLAG00005026697)	meaf6 (ENSDLAG00005018732)	fhl3b (ENSDLAG00005018713) ##33	rragcb (ENSDLAG00005018704) #36	ppt1 (ENSDLAG00005032737)	ENSDLAG00005017641	KIAA0319L (ENSDLAG00005016664)	NCDN (ENSDLAG00005016625)	tfap2e (ENSDLAG00005016618)	ENSDLAG00005016605	beta 2 (ENSDLAG00005034806)
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00940000156213.q.a	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Carangaria	ANCESTRAL SPECIES	14	ENSGT00940000156213.q.b	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Pleuronectoidei	ANCESTRAL SPECIES	33	ENSGT00940000156213.q.b	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00940000177439	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00950000183031.A.a.a #36	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028
Tongue sole	MODERN SPECIES	9	msto1 (ENSCSEG00000009998)	srsf4 (ENSCSEG00000010058)	xkr8.3 (ENSCSEG00000010119)	ENSCSEG00000010127	ENSCSEG00000010138	eya3 (ENSCSEG00000010177)	si:ch211-195b13.1 (ENSCSEG00000010202)	myo1g (ENSCSEG00000010242)	si:dkeyp-92c9.2 (ENSCSEG00000010283)	edn1 (ENSCSEG00000010290)	HIVEP1 (ENSCSEG00000010301)	TMEM170B (ENSCSEG00000010318)	nedd9 (ENSCSEG00000010325)	smim13 (ENSCSEG00000010342)	zc3h12ab (ENSCSEG00000010348) ##17	oscp1a (ENSCSEG00000010362) ##22	LSM10 (ENSCSEG00000010374)	eva1bb (ENSCSEG00000010382) ##24	thrap3b (ENSCSEG00000010392) ##26	map7d1b (ENSCSEG00000010416) ##27	stpg1 (ENSCSEG00000010471)	meaf6 (ENSCSEG00000010482)	fhl3b (ENSCSEG00000010500) ##33	rragcb (ENSCSEG00000010508) #36	ppt1 (ENSCSEG00000010527)	cap1 (ENSCSEG00000010543)	ENSCSEG00000010571	NCDN (ENSCSEG00000010623)	tfap2e (ENSCSEG00000010632)	psmb2 (ENSCSEG00000010643)	cdca5 (ENSCSEG00000010655)
Turbot	MODERN SPECIES	14	ENSSMAG00000001707	ENSSMAG00000035150	xkr8.3 (ENSSMAG00000028110)	ENSSMAG00000001691	eya3 (ENSSMAG00000001662)	si:ch211-195b13.1 (ENSSMAG00000001608)	myo1g (ENSSMAG00000001483)	si:dkeyp-92c9.2 (ENSSMAG00000001471)	edn1 (ENSSMAG00000001461)	HIVEP1 (ENSSMAG00000001439)	TMEM170B (ENSSMAG00000030357)	nedd9 (ENSSMAG00000001395)	smim13 (ENSSMAG00000030110)	zc3h12ab (ENSSMAG00000001367) ##17	ENSSMAG00000021680	oscp1a (ENSSMAG00000001314) ##22	LSM10 (ENSSMAG00000001297)	eva1bb (ENSSMAG00000001280) ##24	thrap3b (ENSSMAG00000001259) ##26	map7d1b (ENSSMAG00000001191) ##27	stpg1 (ENSSMAG00000035705)	meaf6 (ENSSMAG00000001163)	fhl3b (ENSSMAG00000001140) ##33	rragcb (ENSSMAG00000001115) #36	ppt1 (ENSSMAG00000001080)	ENSSMAG00000001063	KIAA0319L (ENSSMAG00000001024)	NCDN (ENSSMAG00000001017)	TFAP2E (ENSSMAG00000000991)	ENSSMAG00000037330	ENSSMAG00000000955
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00530000064067	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	14													smim13 (ENSLCAG00010004056)	zc3h12ab (ENSLCAG00010004058) ##17	ENSLCAG00010004066	oscp1a (ENSLCAG00010004068) ##22	LSM10 (ENSLCAG00010004071)	ENSLCAG00010004074	map7d1b (ENSLCAG00010004081) ##27	ENSLCAG00010004083	ENSLCAG00010004086	morn4 (ENSLCAG00010004090)	ENSLCAG00010004098	st3gal7 (ENSLCAG00010004103)	hps1 (ENSLCAG00010004110)	HPSE2 (ENSLCAG00010004113)	CNNM1 (ENSLCAG00010004120)	got1 (ENSLCAG00010004125)	nkx2.3 (ENSLCAG00010004130)	nkx3.3 (ENSLCAG00010004133)	slc25a28 (ENSLCAG00010004135)
Barramundi perch	MODERN SPECIES	1405														ENSLCAG00010025124 ##17	ENSLCAG00010025129	OSCP1 (ENSLCAG00010025135) ##22
Seriola	ANCESTRAL SPECIES	42	ENSGT00530000064067	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257
Yellowtail amberjack	MODERN SPECIES	2850										HIVEP1 (ENSSLDG00000009376)	TMEM170B (ENSSLDG00000009358)	nedd9 (ENSSLDG00000009345)	smim13 (ENSSLDG00000009331)	zc3h12ab (ENSSLDG00000009317) ##17	ENSSLDG00000009301	oscp1a (ENSSLDG00000009259) ##22	eva1bb (ENSSLDG00000009233) ##24	thrap3b (ENSSLDG00000009210) ##26	ENSSLDG00000009184	map7d1b (ENSSLDG00000009085) ##27	stpg1 (ENSSLDG00000009059)	meaf6 (ENSSLDG00000009035)	ENSSLDG00000009021
Greater amberjack	MODERN SPECIES	94	srsf4 (ENSSDUG00000007387)	xkr8.3 (ENSSDUG00000007380)	ENSSDUG00000007374	eya3 (ENSSDUG00000007316)	si:ch211-195b13.1 (ENSSDUG00000007289)	myo1g (ENSSDUG00000007234)	si:dkeyp-92c9.2 (ENSSDUG00000007223)	edn1 (ENSSDUG00000007218)	HIVEP1 (ENSSDUG00000007210)	TMEM170B (ENSSDUG00000007203)	nedd9 (ENSSDUG00000007176)	smim13 (ENSSDUG00000007168)	zc3h12ab (ENSSDUG00000007162) ##17	ENSSDUG00000007152	ENSSDUG00000007130	oscp1a (ENSSDUG00000007103) ##22	LSM10 (ENSSDUG00000007090)	eva1bb (ENSSDUG00000007086) ##24	thrap3b (ENSSDUG00000007054) ##26	map7d1b (ENSSDUG00000007025) ##27	stpg1 (ENSSDUG00000006981)	meaf6 (ENSSDUG00000006968)
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00950000183031.A.a.a #36	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028
Zig-zag eel	MODERN SPECIES	2	xkr8.3 (ENSMAMG00000004867)	ENSMAMG00000004859	eya3 (ENSMAMG00000004838)	ENSMAMG00000004793	si:ch211-195b13.1 (ENSMAMG00000004750)	myo1g (ENSMAMG00000004681)	si:dkeyp-92c9.2 (ENSMAMG00000027420)	edn1 (ENSMAMG00000004638)	HIVEP1 (ENSMAMG00000004590)	TMEM170B (ENSMAMG00000024794)	nedd9 (ENSMAMG00000004548)	smim13 (ENSMAMG00000028528)	zc3h12ab (ENSMAMG00000004483) ##17	ENSMAMG00000004529	ENSMAMG00000027271	oscp1a (ENSMAMG00000004443) ##22	ENSMAMG00000028468	eva1bb (ENSMAMG00000025345) ##24	thrap3b (ENSMAMG00000004348) ##26	map7d1b (ENSMAMG00000004292) ##27	stpg1 (ENSMAMG00000004237)	meaf6 (ENSMAMG00000004214)	fhl3b (ENSMAMG00000004199) ##33	rragcb (ENSMAMG00000004171) #36	ppt1 (ENSMAMG00000004148)	ENSMAMG00000004094	KIAA0319L (ENSMAMG00000004065)	NCDN (ENSMAMG00000004058)	TFAP2E (ENSMAMG00000004022)	psmb2 (ENSMAMG00000003992)	ENSMAMG00000003988
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00940000156790	ENSGT00390000017955.c	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000010028	ENSGT00940000169005
Siamese fighting fish	MODERN SPECIES	2	srsf4 (ENSBSLG00000002398)	ENSBSLG00000002379	xkr8.3 (ENSBSLG00000002359)	ENSBSLG00000023444	eya3 (ENSBSLG00000023364)	si:ch211-195b13.1 (ENSBSLG00000022497)	myo1g (ENSBSLG00000022131)	si:dkeyp-92c9.2 (ENSBSLG00000022111)	edn1 (ENSBSLG00000022107)	HIVEP1 (ENSBSLG00000022092)	TMEM170B (ENSBSLG00000022084)	nedd9 (ENSBSLG00000022070)	smim13 (ENSBSLG00000022059)	ENSBSLG00000022051 ##17	ENSBSLG00000022042	oscp1a (ENSBSLG00000022029) ##22	LSM10 (ENSBSLG00000022026)	eva1bb (ENSBSLG00000022015) ##24	thrap3b (ENSBSLG00000021994) ##26	map7d1b (ENSBSLG00000021935) ##27	stpg1 (ENSBSLG00000021909)	meaf6 (ENSBSLG00000021881)	fhl3b (ENSBSLG00000021855) ##33	rragcb (ENSBSLG00000021829) #36	ppt1 (ENSBSLG00000021676)	cap1 (ENSBSLG00000021643)	KIAA0319L (ENSBSLG00000021191)	NCDN (ENSBSLG00000020347)	tfap2e (ENSBSLG00000020341)	psmb2 (ENSBSLG00000020317)	cdca5 (ENSBSLG00000020313)
Climbing perch	MODERN SPECIES	2	ENSATEG00000028091	ENSATEG00000025963	xkr8.3 (ENSATEG00000029780)	ENSATEG00000005722	eya3 (ENSATEG00000005730)	si:ch211-195b13.1 (ENSATEG00000028776)	myo1g (ENSATEG00000005817)	si:dkeyp-92c9.2 (ENSATEG00000005914)	edn1 (ENSATEG00000026028)	HIVEP1 (ENSATEG00000005949)	TMEM170B (ENSATEG00000028130)	nedd9 (ENSATEG00000006076)	smim13 (ENSATEG00000006130)	zc3h12ab (ENSATEG00000006140) ##17	ENSATEG00000006247	oscp1a (ENSATEG00000006263) ##22	LSM10 (ENSATEG00000006310)	eva1bb (ENSATEG00000006328) ##24	thrap3b (ENSATEG00000006350) ##26	map7d1b (ENSATEG00000006432) ##27	stpg1 (ENSATEG00000006457)	meaf6 (ENSATEG00000006466)	fhl3b (ENSATEG00000006513) ##33	rragcb (ENSATEG00000006525) #36	ppt1 (ENSATEG00000028900)	ENSATEG00000006592	KIAA0319L (ENSATEG00000006607)	NCDN (ENSATEG00000006619)	TFAP2E (ENSATEG00000006627)	psmb2 (ENSATEG00000006643)	ENSATEG00000006679
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	328													nedd9 (ENSHCOG00000004279)	smim13 (ENSHCOG00000004269)	zc3h12ab (ENSHCOG00000004255) ##17	oscp1a (ENSHCOG00000004224) ##22	eva1bb (ENSHCOG00000004121) ##24	thrap3b (ENSHCOG00000004098) ##26	ENSHCOG00000004092 ##27	meaf6 (ENSHCOG00000004069)	fhl3b (ENSHCOG00000004026) ##33	ppt1 (ENSHCOG00000004004)	rragcb (ENSHCOG00000003986) #36	cap1 (ENSHCOG00000003977)	KIAA0319L (ENSHCOG00000003961)	NCDN (ENSHCOG00000003839)	tfap2e (ENSHCOG00000003827)	psmb2 (ENSHCOG00000003803)	ENSHCOG00000003772	ENSHCOG00000003758	CLSPN (ENSHCOG00000003741)
Tiger tail seahorse	MODERN SPECIES	957																ENSHCOG00000017318 ##22
Pinecone sodierfish	MODERN SPECIES	2	xkr8.3 (ENSMMDG00005017185)	ENSMMDG00005017186	eya3 (ENSMMDG00005017198)	si:ch211-195b13.1 (ENSMMDG00005017403)	myo1g (ENSMMDG00005019146)	ENSMMDG00005019149	edn1 (ENSMMDG00005019150)	HIVEP1 (ENSMMDG00005019157)	TMEM170B (ENSMMDG00005019175)	nedd9 (ENSMMDG00005019178)	smim13 (ENSMMDG00005019180)	zc3h12ab (ENSMMDG00005019182) ##17	ENSMMDG00005019184 ##17	ENSMMDG00005019186	ENSMMDG00005019189	oscp1a (ENSMMDG00005019191) ##22	LSM10 (ENSMMDG00005019195)	eva1bb (ENSMMDG00005019196) ##24	thrap3b (ENSMMDG00005019200) ##26	map7d1b (ENSMMDG00005019203) ##27	stpg1 (ENSMMDG00005019205)	meaf6 (ENSMMDG00005019209)	fhl3b (ENSMMDG00005019214) ##33	rragcb (ENSMMDG00005019217) #36	ppt1 (ENSMMDG00005019225)	cap1 (ENSMMDG00005019452)	KIAA0319L (ENSMMDG00005019489)	NCDN (ENSMMDG00005020974)	tfap2e (ENSMMDG00005020979)	psmb2 (ENSMMDG00005020981)	cdca5 (ENSMMDG00005020983)
Cod	MODERN SPECIES	14	ENSGMOG00000032251	xkr8.3 (ENSGMOG00000012902)	ENSGMOG00000029001	ENSGMOG00000030508	eya3 (ENSGMOG00000012887)	si:ch211-195b13.1 (ENSGMOG00000012874)	myo1g (ENSGMOG00000011448)	edn1 (ENSGMOG00000034660)	HIVEP1 (ENSGMOG00000011398)	TMEM170B (ENSGMOG00000029827)	nedd9 (ENSGMOG00000030633)	smim13 (ENSGMOG00000025692)	zc3h12ab (ENSGMOG00000030776) ##17	ENSGMOG00000026488	ENSGMOG00000017593	oscp1a (ENSGMOG00000017579) ##22	LSM10 (ENSGMOG00000019832)	eva1bb (ENSGMOG00000017569) ##24	thrap3b (ENSGMOG00000023763) ##26	ENSGMOG00000001665	map7d1b (ENSGMOG00000022540) ##27	stpg1 (ENSGMOG00000024695)	meaf6 (ENSGMOG00000007357)	fhl3b (ENSGMOG00000033464) ##33	rragcb (ENSGMOG00000015890) #36	ENSGMOG00000015901	ENSGMOG00000015918	ENSGMOG00000035476	ENSGMOG00000024806	ENSGMOG00000029342	KIAA0319L (ENSGMOG00000012803)
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##17	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00940000154096.b.b.b.b.a ##24	ENSGT00950000183163.a.a.bb ##26	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00390000011598	ENSGT00390000015257	ENSGT00950000183028.a.b.b ##33	ENSGT00950000183031.A.a.a #36	ENSGT00390000017974.nb #37	ENSGT01090000260070.C.a	ENSGT00390000017974.ob ##37	ENSGT00940000159442	ENSGT00940000158787	ENSGT01060000248564.a.b	ENSGT00530000063881.a.b
Salmoninae	ANCESTRAL SPECIES	362						ENSGT00940000158053.u	ENSGT00390000008812.b.a.c	ENSGT00990000212595	ENSGT00950000183053.D.g	ENSGT00940000158242.k	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b.g	ENSGT00560000078630	ENSGT00940000155107.a.a.b.d ##17	ENSGT00390000010118.c.a.b.c	ENSGT00390000004808.f ##22	ENSGT00510000049601.j	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.b ##24	ENSGT00950000183163.a.a.bb.c ##26	ENSGT00950000182941.a.a.b.e.b.e ##27	ENSGT00390000011598	ENSGT00390000015257.h	ENSGT00950000183028.a.b.b.f ##33	ENSGT00950000183031.A.a.a.b #36	ENSGT00390000017974.ob.f ##37	ENSGT01090000260070.C.b.d	ENSGT00940000158787.h.a	ENSGT00940000154450.tc.a	ENSGT00940000164147.b	ENSGT00940000159312.d
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00940000155909.o.b.d	ENSGT00390000001663.p	ENSGT01090000260093.b.f.v	ENSGT00950000182978.B.e	ENSGT00940000164496.a.a.b	ENSGT00940000158053.u	ENSGT00390000008812.b.a.c	ENSGT00990000212595	ENSGT00950000183053.D.g	ENSGT00940000158242.k	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b.g	ENSGT00560000078630.h	ENSGT00940000155107.a.a.b.d ##17	ENSGT00390000010118.c.a.b.c	ENSGT00390000004808.f ##22	ENSGT00510000049601.j	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.b ##24	ENSGT00950000183163.a.a.bb.c ##26	ENSGT00950000182941.a.a.b.e.b.e ##27	ENSGT00390000011598	ENSGT00390000015257.h	ENSGT00950000183028.a.b.b.f ##33	ENSGT00950000183031.A.a.a.b #36	ENSGT00390000017974.ob.f ##37	ENSGT01090000260070.C.b.d	ENSGT00940000158787.h.a	ENSGT00990000212118	ENSGT00940000154450.tc.a	ENSGT00940000164147.b
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000155909.o.b.d	ENSGT00390000001663.p	ENSGT01090000260093.b.f.v	ENSGT00950000182978.B.e	ENSGT00940000164496.a.a.b	ENSGT00940000158053.u	ENSGT00390000008812.b.a.c	ENSGT00990000212595	ENSGT00950000183053.D.g	ENSGT00940000158242.k	ENSGT00940000160424.f	ENSGT00950000183008.a.a.a.b.g	ENSGT00560000078630.h	ENSGT00940000155107.a.a.b.d ##17	ENSGT00390000010118.c.a.b.c	ENSGT00390000004808.f ##22	ENSGT00510000049601.j	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.b ##24	ENSGT00950000183163.a.a.bb.c ##26	ENSGT00950000182941.a.a.b.e.b.e ##27	ENSGT00390000011598	ENSGT00390000015257.h	ENSGT00950000183028.a.b.b.f ##33	ENSGT00950000183031.A.a.a.b #36	ENSGT00390000017974.ob.f ##37	ENSGT01090000260070.C.b.d	ENSGT00940000158787.h.a	ENSGT00990000212118	ENSGT00940000154450.tc.a	ENSGT00940000164147.b
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000009907	eya3 (ENSOMYG00000009816)	si:ch211-195b13.1 (ENSOMYG00000009678)	ENSOMYG00000009659	myo1g (ENSOMYG00000009396)	ENSOMYG00000049691	si:dkeyp-92c9.2 (ENSOMYG00000009133)	edn1 (ENSOMYG00000077425)	ENSOMYG00000074796	HIVEP1 (ENSOMYG00000009085)	TMEM170B (ENSOMYG00000048814)	nedd9 (ENSOMYG00000009014)	smim13 (ENSOMYG00000008986)	zc3h12ab (ENSOMYG00000058082) ##17	ENSOMYG00000008955	oscp1a (ENSOMYG00000008917) ##22	ENSOMYG00000008805	ENSOMYG00000008773	ENSOMYG00000054099	eva1bb (ENSOMYG00000008754) ##24	thrap3b (ENSOMYG00000008733) ##26	map7d1b (ENSOMYG00000008563) ##27	stpg1 (ENSOMYG00000008440)	meaf6 (ENSOMYG00000008396)	fhl3b (ENSOMYG00000008287) ##33	ENSOMYG00000008221 #36	mycbp (ENSOMYG00000008266) ##37	gja9b (ENSOMYG00000069617)	ENSOMYG00000008192	ENSOMYG00000008154	srsf10b (ENSOMYG00000071968)
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000155909.o.b.d	ENSGT00390000001663.p	ENSGT01090000260093.b.f.v	ENSGT00950000182978.B.e	ENSGT00940000164496.a.a.b	ENSGT00940000158053.u	ENSGT00390000008812.b.a.c	ENSGT00990000212595	ENSGT00950000183053.D.g	ENSGT00940000158242.k	ENSGT00940000160424.f	ENSGT00950000183008.a.a.a.b.g	ENSGT00560000078630.h	ENSGT00940000155107.a.a.b.d ##17	ENSGT00390000010118.c.a.b.c	ENSGT00390000004808.f ##22	ENSGT00510000049601.j	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.b ##24	ENSGT00950000183163.a.a.bb.c ##26	ENSGT00950000182941.a.a.b.e.b.e ##27	ENSGT00390000011598	ENSGT00390000015257.h	ENSGT00950000183028.a.b.b.f ##33	ENSGT00950000183031.A.a.a.b #36	ENSGT00390000017974.ob.f ##37	ENSGT01090000260070.C.b.d	ENSGT00940000158787.h.a	ENSGT00990000212118	ENSGT00940000154450.tc.a	ENSGT00940000164147.b
Chinook salmon	MODERN SPECIES	24	ENSOTSG00005036142	ENSOTSG00005006740	ENSOTSG00005006739	eya3 (ENSOTSG00005006724)	si:ch211-195b13.1 (ENSOTSG00005006718)	myo1g (ENSOTSG00005006644)	si:dkeyp-92c9.2 (ENSOTSG00005006642)	edn1 (ENSOTSG00005006634)	HIVEP1 (ENSOTSG00005006631)	TMEM170B (ENSOTSG00005006626)	nedd9 (ENSOTSG00005006624)	smim13 (ENSOTSG00005006622)	ENSOTSG00005006620	zc3h12ab (ENSOTSG00005006618) ##17	ENSOTSG00005006617	oscp1a (ENSOTSG00005006612) ##22	gstr (ENSOTSG00005006610)	ENSOTSG00005006609	eva1bb (ENSOTSG00005006608) ##24	thrap3b (ENSOTSG00005006607) ##26	map7d1b (ENSOTSG00005006605) ##27	stpg1 (ENSOTSG00005006604)	meaf6 (ENSOTSG00005006603)	fhl3b (ENSOTSG00005006601) ##33	ENSOTSG00005006600 #36	mycbp (ENSOTSG00005006599) ##37	gja9b (ENSOTSG00005006597)	ENSOTSG00005006595	srsf10b (ENSOTSG00005006592)	ENSOTSG00005006591	MAN1C1 (ENSOTSG00005006586)
Coho salmon	MODERN SPECIES	5	ENSOKIG00005020835	ENSOKIG00005021276	ENSOKIG00005021280	eya3 (ENSOKIG00005021312)	si:ch211-195b13.1 (ENSOKIG00005021720)	myo1g (ENSOKIG00005021794)	si:dkeyp-92c9.2 (ENSOKIG00005021966)	ENSOKIG00005021969	edn1 (ENSOKIG00005021979)	HIVEP1 (ENSOKIG00005021986)	TMEM170B (ENSOKIG00005021995)	nedd9 (ENSOKIG00005022006)	smim13 (ENSOKIG00005022016)	zc3h12ab (ENSOKIG00005022030) ##17	ENSOKIG00005022035	oscp1a (ENSOKIG00005022041) ##22	gstr (ENSOKIG00005022094)	ENSOKIG00005022105	eva1bb (ENSOKIG00005022113) ##24	thrap3b (ENSOKIG00005022125) ##26	map7d1b (ENSOKIG00005022142) ##27	stpg1 (ENSOKIG00005022179)	meaf6 (ENSOKIG00005022194)	fhl3b (ENSOKIG00005022242) ##33	ENSOKIG00005022253 #36	mycbp (ENSOKIG00005022266) ##37	gja9b (ENSOKIG00005022289)	ENSOKIG00005022300	ENSOKIG00005022314	srsf10b (ENSOKIG00005022322)	ENSOKIG00005022330
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000154766.a.a.mb	ENSGT00390000001663.p	ENSGT00940000155909.o.b.d	ENSGT01090000260093.b.f.v	ENSGT00950000182978.B.e	ENSGT00940000164496.a.a.b	ENSGT00940000158053.u	ENSGT00390000008812.b.a.c	ENSGT00950000183053.D.g	ENSGT00940000158242.k	ENSGT00940000160424.c	ENSGT00950000183008.a.a.a.b.g	ENSGT00560000078630.h	ENSGT00940000155107.a.a.b.d ##17	ENSGT00390000010118.c.a.b.c	ENSGT00390000004808.f ##22	ENSGT00510000049601.j	ENSGT00940000181189	ENSGT00940000154096.b.b.b.b.a.b ##24	ENSGT00950000183163.a.a.bb.c ##26	ENSGT00950000182941.a.a.b.e.b.e ##27	ENSGT00390000011598	ENSGT00390000015257.h	ENSGT00950000183028.a.b.b.f ##33	ENSGT00950000183031.A.a.a.b #36	ENSGT00390000017974.ob.f ##37	ENSGT01090000260070.C.b.d	ENSGT00940000158787.h.a	ENSGT00990000212118	ENSGT00940000154450.tc.a	ENSGT00940000164147.b
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000117054	ENSSSAG00000008556	eya3 (ENSSSAG00000008572)	ENSSSAG00000087922	si:ch211-195b13.1 (ENSSSAG00000008591)	myo1g (ENSSSAG00000008639)	si:dkeyp-92c9.2 (ENSSSAG00000103119)	ENSSSAG00000119580	edn1 (ENSSSAG00000119261)	HIVEP1 (ENSSSAG00000009332)	TMEM170B (ENSSSAG00000112888)	nedd9 (ENSSSAG00000009361)	ENSSSAG00000092580	zc3h12ab (ENSSSAG00000087542) ##17	ENSSSAG00000009391	oscp1a (ENSSSAG00000009407) ##22	ENSSSAG00000106209	CA078 (ENSSSAG00000009689) ##24	thrap3b (ENSSSAG00000009695) ##26	map7d1b (ENSSSAG00000009702) ##27	stpg1 (ENSSSAG00000009729)	meaf6 (ENSSSAG00000009744)	fhl3 (ENSSSAG00000009766) ##33	ENSSSAG00000101880 #36	mycbp (ENSSSAG00000115673) ##37	gja9b (ENSSSAG00000009793)	ENSSSAG00000009802	ENSSSAG00000009809	srsf10b (ENSSSAG00000104443)	ENSSSAG00000009871	slc9a1b (ENSSSAG00000017046)
River trout	MODERN SPECIES	29	grb10a (ENSSTUG00000041208)	ENSSTUG00000041163	ENSSTUG00000041155	ENSSTUG00000041130	eya3 (ENSSTUG00000040997)	si:ch211-195b13.1 (ENSSTUG00000040952)	myo1g (ENSSTUG00000040110)	si:dkeyp-92c9.2 (ENSSTUG00000040079)	edn1 (ENSSTUG00000040060)	HIVEP1 (ENSSTUG00000040056)	TMEM170B (ENSSTUG00000040049)	nedd9 (ENSSTUG00000040022)	smim13 (ENSSTUG00000040014)	zc3h12ab (ENSSTUG00000040008) ##17	ENSSTUG00000040003	oscp1a (ENSSTUG00000039983) ##22	gstr (ENSSTUG00000039963)	ENSSTUG00000039956	eva1bb (ENSSTUG00000039941) ##24	thrap3b (ENSSTUG00000039900) ##26	map7d1b (ENSSTUG00000039850) ##27	stpg1 (ENSSTUG00000039823)	meaf6 (ENSSTUG00000039757)	fhl3b (ENSSTUG00000039744) ##33	ENSSTUG00000039736 #36	mycbp (ENSSTUG00000039721) ##37	ENSSTUG00000039683	ENSSTUG00000039678	srsf10b (ENSSTUG00000039664)	ENSSTUG00000039655	MAN1C1 (ENSSTUG00000039533)
Huchen	MODERN SPECIES	249						ENSHHUG00000029556	si:dkeyp-92c9.2 (ENSHHUG00000029553)	ENSHHUG00000029540	edn1 (ENSHHUG00000029529)	HIVEP1 (ENSHHUG00000029527)	TMEM170B (ENSHHUG00000029522)	nedd9 (ENSHHUG00000029518)	ENSHHUG00000029512	zc3h12ab (ENSHHUG00000029509) ##17	ENSHHUG00000029507	oscp1a (ENSHHUG00000029498) ##22	gstr (ENSHHUG00000029478)	ENSHHUG00000029474	eva1bb (ENSHHUG00000029470) ##24	thrap3b (ENSHHUG00000029460) ##26	map7d1b (ENSHHUG00000029434) ##27	stpg1 (ENSHHUG00000029428)	meaf6 (ENSHHUG00000029351)	fhl3b (ENSHHUG00000029346) ##33	ENSHHUG00000029301 #36	mycbp (ENSHHUG00000029287) ##37	gja9b (ENSHHUG00000029286)	ENSHHUG00000029272	srsf10b (ENSHHUG00000029267)	ENSHHUG00000029263	MAN1C1 (ENSHHUG00000029227)
Northern pike	MODERN SPECIES	9	ENSELUG00000001493	grinaa (ENSELUG00000006921)	mapk15 (ENSELUG00000006937)	vps28 (ENSELUG00000006986)	ENSELUG00000027226	cap2 (ENSELUG00000007130)	rbm24a (ENSELUG00000007163)	edn1 (ENSELUG00000007183)	HIVEP1 (ENSELUG00000007223)	TMEM170B (ENSELUG00000007252)	nedd9 (ENSELUG00000007314)	smim13 (ENSELUG00000030404)	zc3h12ab (ENSELUG00000007368) ##17	ENSELUG00000029369	ENSELUG00000007378	oscp1a (ENSELUG00000007413) ##22	LSM10 (ENSELUG00000007452)	eva1bb (ENSELUG00000030974) ##24	thrap3b (ENSELUG00000007499) ##26	map7d1b (ENSELUG00000007639) ##27	stpg1 (ENSELUG00000007684)	meaf6 (ENSELUG00000028481)	fhl3b (ENSELUG00000007755) ##33	ENSELUG00000007786 #36	mycbp (ENSELUG00000031004) ##37	gja9b (ENSELUG00000007830)	akirin1 (ENSELUG00000007858)	ENSELUG00000029192	srsf10b (ENSELUG00000007888)	ENSELUG00000007901	ENSELUG00000000287
Osteoglossiformes	ANCESTRAL SPECIES	1							ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000156338.b	ENSGT00390000017974.ob ##37	ENSGT00950000183028.a.b.b ##33	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##27	ENSGT00950000183163.a.a.bb ##26	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##22	ENSGT00510000048364	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D.b	ENSGT00390000008812.b.a	ENSGT00940000158053.r	ENSGT01100000263475.f.b.b	ENSGT00940000173852	ENSGT00940000164496.a.a.i	ENSGT00950000182978.B	ENSGT01090000260093.b.e	ENSGT00940000156213	ENSGT00530000063698.b.a
Asian bonytongue	MODERN SPECIES	15								LIM2 (ENSSFOG00015003041)	ENSSFOG00015003032	tekt2 (ENSSFOG00015002930)	slc9a1b (ENSSFOG00015002622)	thrap3b (ENSSFOG00015002576) ##26	ENSSFOG00015026830	ENSSFOG00015002542	ENSSFOG00015028838	OSCP1 (ENSSFOG00015019909) ##22	LSM10 (ENSSFOG00015019954)	smim13 (ENSSFOG00015019966)	nedd9 (ENSSFOG00015019973)	TMEM170B (ENSSFOG00015019988)	HIVEP1 (ENSSFOG00015020001)	ENSSFOG00015029250	EDN1 (ENSSFOG00015020014)	ENSSFOG00015029459	si:dkeyp-92c9.2 (ENSSFOG00015028986)	myo1g (ENSSFOG00015020082)	si:ch211-195b13.1 (ENSSFOG00015020217)	eya3 (ENSSFOG00015020249)	xkr8.3 (ENSSFOG00015020275)	ENSSFOG00015020292	ENSSFOG00015025667
Spotted gar	MODERN SPECIES	672	ctps1b (ENSLOCG00000003415)	smpdl3b (ENSLOCG00000003393) #8	mecr (ENSLOCG00000003375) #9	pdik1l (ENSLOCG00000003363)	lin28ab (ENSLOCG00000003353) #10	maneal (ENSLOCG00000003339) #11	yrdc (ENSLOCG00000003321) #12	mtf1 (ENSLOCG00000003310) #13	INPP5B (ENSLOCG00000003290) #14	sf3a3 (ENSLOCG00000003273)	ENSLOCG00000003245 #16	zc3h12ab (ENSLOCG00000003232) #17	GRIK3 (ENSLOCG00000003209) #18	csf3r (ENSLOCG00000003184) #19	mrps15 (ENSLOCG00000003165) #20	oscp1a (ENSLOCG00000003127) #22	LSM10 (ENSLOCG00000018277)	STK40 (ENSLOCG00000003116) #23	eva1bb (ENSLOCG00000003102) ##24	rpa2 (ENSLOCG00000003082) #7	THEMIS2 (ENSLOCG00000003069)	ppp1r8a (ENSLOCG00000003050)	med18 (ENSLOCG00000003042)	foxo6b (ENSLOCG00000003028)	SCMH1 (ENSLOCG00000003009)	ENSLOCG00000002995	cited4b (ENSLOCG00000018276)	sh3d21 (ENSLOCG00000002978) #25	ENSLOCG00000002939	map7d1a (ENSLOCG00000002929) #27	MAP3K6 (ENSLOCG00000002899) #28