Tetrapoda	ANCESTRAL SPECIES	281														ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24
Amniota	ANCESTRAL SPECIES	12	ENSGT00390000000614 #8	ENSGT00940000164531	ENSGT00940000160761 #10	ENSGT00940000164045	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000175262	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000002210.c.a	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.b ##28	ENSGT01020000230401.a.a.a.i.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00400000022349	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000159201
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000164045	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.b ##28	ENSGT01020000230401.a.a.a.i.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00400000022349	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000159201
Theria	ANCESTRAL SPECIES	4	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000164045	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.b ##28	ENSGT01020000230401.a.a.a.i.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00600000085213	ENSGT00390000010738 #36
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000164045	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.b ##28	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00500000045766	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00500000045766	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00390000010738 #36
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00390000010738 #36	ENSGT00600000085213
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00390000010738 #36	ENSGT00600000085213
Glires	ANCESTRAL SPECIES	5	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00390000010738 #36	ENSGT00600000085213
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00390000010738 #36	ENSGT00600000085213
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00390000010738 #36	ENSGT00600000085213
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000154922.b	ENSGT00940000161321 #7	ENSGT00390000000614 #8	ENSGT00940000161082 #9	ENSGT00940000160761 #10	ENSGT00940000161543 #11	ENSGT00390000003256 #12	ENSGT00940000153766.A #13	ENSGT00950000183100.B #14	ENSGT00940000153408.A #15	ENSGT00940000157048 #17	ENSGT00940000155636 #18	ENSGT00390000003812 #19	ENSGT00390000018686 #20	ENSGT00390000006493 #21	ENSGT00940000157284 #22	ENSGT00390000001121 #23	ENSGT00940000157084 #24	ENSGT00940000158672 #25	ENSGT00490000044373 #26	ENSGT00950000182898.a.a.a.a.b #27	ENSGT01020000230401.a.a.a.i.a.a #28	ENSGT00940000157927 #29	ENSGT00940000159120 #30	ENSGT00390000013762.b.a #31	ENSGT00940000159341 #32	ENSGT00940000158246 #33	ENSGT00390000006786	ENSGT00550000074922 #34	ENSGT00390000010738 #36	ENSGT00940000160171 #37
Eurasian red squirrel	MODERN SPECIES	16	CRIP3 (ENSSVLG00005006201) #7	ZNF318 (ENSSVLG00005006110) #8	ABCC10 (ENSSVLG00005006073) #9	DLK2 (ENSSVLG00005006024) #10	TJAP1 (ENSSVLG00005005960) #11	LRRC73 (ENSSVLG00005005929) #12	YIPF3 (ENSSVLG00005005873) #13	POLR1C (ENSSVLG00005005820) #14	XPO5 (ENSSVLG00005005755) #15	ENSSVLG00005005709 #16	POLH (ENSSVLG00005005606) #17	ENSSVLG00005005500 #18	MAD2L1BP (ENSSVLG00005005455) #19	RSPH9 (ENSSVLG00005005429) #20	MRPS18A (ENSSVLG00005005389) #21	VEGFA (ENSSVLG00005005248) #22	MRPL14 (ENSSVLG00005005175) #23	TMEM63B (ENSSVLG00005005124) #24	CAPN11 (ENSSVLG00005005041) #25	MYMX (ENSSVLG00005005017) #26	SLC29A1 (ENSSVLG00005004999) #27	HSP90AB1 (ENSSVLG00005004982) #28	SLC35B2 (ENSSVLG00005004954) #29	NFKBIE (ENSSVLG00005004924) #30	TMEM151B (ENSSVLG00005004904) #31	TCTE1 (ENSSVLG00005004874) #32	AARS2 (ENSSVLG00005004851) #33	CDC5L (ENSSVLG00005004771) #34	ENSSVLG00005004758 #35	ENSSVLG00005004703 #36	RUNX2 (ENSSVLG00005004619) #37