Rodentia	ANCESTRAL SPECIES	20	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.a.b.d ##26	ENSGT00940000170510	ENSGT00390000017839.o.b.a.b.c.a ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35
Rodentia_B	ANCESTRAL SPECIES	22	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37
Myomorpha	ANCESTRAL SPECIES	30	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37
Muroidea	ANCESTRAL SPECIES	28	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618.sb	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618.sb	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00940000154885.A.u #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618.sb	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00940000154885.A.u #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a.a #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37
Prairie vole	MODERN SPECIES	7	2210016L21Rik (ENSMOCG00000020970) #7	Hnf1a (ENSMOCG00000003129) #8	Sppl3 (ENSMOCG00000005567) #9	Acads (ENSMOCG00000012085) #10	Unc119b (ENSMOCG00000017585) #11	Mlec (ENSMOCG00000001542) #12	ENSMOCG00000004672 #13	Pop5 (ENSMOCG00000013322) #14	Rnf10 (ENSMOCG00000018331) #15	Coq5 (ENSMOCG00000022159) #16	ENSMOCG00000018482 #17	Srsf9 (ENSMOCG00000021163) #18	Gatc (ENSMOCG00000005051) #19	Triap1 (ENSMOCG00000005593) #20	ENSMOCG00000006758 #21	Msi1 (ENSMOCG00000002286) #22	Pla2g1b (ENSMOCG00000010330) #23	Sirt4 (ENSMOCG00000016396) #24	Pxn (ENSMOCG00000014430) #25	ENSMOCG00000012309 #26	Gcn1 (ENSMOCG00000000746) #27	Rab35 (ENSMOCG00000019999) #28	Bicdl1 (ENSMOCG00000019402) #29	Cit (ENSMOCG00000012761) #30	Prkab1 (ENSMOCG00000006183) #31	Tmem233 (ENSMOCG00000002502) #32	Ccdc60 (ENSMOCG00000011345) #33	ENSMOCG00000007613 #34	Hspb8 (ENSMOCG00000009705) #35	Srrm4 (ENSMOCG00000006737) #36	Suds3 (ENSMOCG00000001519) #37
Northern American deer mouse	MODERN SPECIES	15	Hnf1a (ENSPEMG00000015189) #8	Sppl3 (ENSPEMG00000010775) #9	Acads (ENSPEMG00000009400) #10	Unc119b (ENSPEMG00000025219) #11	Mlec (ENSPEMG00000001293) #12	ENSPEMG00000018552 #13	Pop5 (ENSPEMG00000017493) #14	Rnf10 (ENSPEMG00000009023) #15	Coq5 (ENSPEMG00000011721) #16	ENSPEMG00000029581	ENSPEMG00000026556 #17	Srsf9 (ENSPEMG00000016311) #18	Gatc (ENSPEMG00000000665) #19	Triap1 (ENSPEMG00000027703) #20	ENSPEMG00000017519 #21	Msi1 (ENSPEMG00000010491) #22	ENSPEMG00000031420 ##23	ENSPEMG00000031062	ENSPEMG00000027796 ##23	ENSPEMG00000024349 ##23	ENSPEMG00000027736 ##23	ENSPEMG00000030171 ##23	ENSPEMG00000025319	Sirt4 (ENSPEMG00000008498) #24	ENSPEMG00000025717	Pxn (ENSPEMG00000006601) #25	ENSPEMG00000030775	ENSPEMG00000008446 #26	Gcn1 (ENSPEMG00000003097) #27	Rab35 (ENSPEMG00000008640) #28	Bicdl1 (ENSPEMG00000019025) #29
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00390000010771 #7	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000000378.d.b.t #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00940000154885.A.u #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.b ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37	ENSGT00940000155735
Golden Hamster	MODERN SPECIES	704	2210016L21Rik (ENSMAUG00000021072) #7	Hnf1a (ENSMAUG00000019909) #8	Sppl3 (ENSMAUG00000011290) #9	Acads (ENSMAUG00000014711) #10	Unc119b (ENSMAUG00000020217) #11	Mlec (ENSMAUG00000000215) #12	ENSMAUG00000018955 #13	Pop5 (ENSMAUG00000019670) #14	Rnf10 (ENSMAUG00000020544) #15	Coq5 (ENSMAUG00000007966) #16	ENSMAUG00000009393 #17	Srsf9 (ENSMAUG00000011403) #18	Gatc (ENSMAUG00000012756) #19	Triap1 (ENSMAUG00000014091) #20	ENSMAUG00000015008 #21	Msi1 (ENSMAUG00000016820) #22	Pla2g1b (ENSMAUG00000002929) #23	Sirt4 (ENSMAUG00000010509) #24	Pxn (ENSMAUG00000013582) #25	ENSMAUG00000020622	Gcn1 (ENSMAUG00000010431) #27	Rab35 (ENSMAUG00000009328) #28	Bicdl1 (ENSMAUG00000012680) #29	ENSMAUG00000016718 #30	ENSMAUG00000013898 #30	ENSMAUG00000017719	Prkab1 (ENSMAUG00000021090) #31	Tmem233 (ENSMAUG00000019424) #32	Ccdc60 (ENSMAUG00000000676) #33	Hspb8 (ENSMAUG00000006639) #35	Srrm4 (ENSMAUG00000013203) #36
Chinese hamster chok1gshd	MODERN SPECIES	130	2210016L21Rik (ENSCGRG00001017554) #7	Hnf1a (ENSCGRG00001014884) #8	Sppl3 (ENSCGRG00001022277) #9	Acads (ENSCGRG00001014770) #10	Unc119b (ENSCGRG00001023757) #11	Mlec (ENSCGRG00001022314) #12	Cabp1 (ENSCGRG00001018949) #13	Pop5 (ENSCGRG00001017974) #14	Rnf10 (ENSCGRG00001012342) #15	COQ5 (ENSCGRG00001009849) #16	ENSCGRG00001022287 #17	Srsf9 (ENSCGRG00001021965) #18	ENSCGRG00001019220 #19	Triap1 (ENSCGRG00001021863) #20	Cox6a1 (ENSCGRG00001021684) #21	Msi1 (ENSCGRG00001018883) #22	ENSCGRG00001012740 #23	ENSCGRG00001010219 ##23	ENSCGRG00001005863 ##23	ENSCGRG00001016265 ##23	ENSCGRG00001008684	ENSCGRG00001024937	SIRT4 (ENSCGRG00001024733) #24	Pxn (ENSCGRG00001010481) #25	ENSCGRG00001023247 ##26	Gcn1 (ENSCGRG00001005500) #27	Rab35 (ENSCGRG00001023636) #28	Bicdl1 (ENSCGRG00001000846) #29	Cit (ENSCGRG00001014957) #30	Prkab1 (ENSCGRG00001011789) #31	Tmem233 (ENSCGRG00001008180) #32
Murinae	ANCESTRAL SPECIES	20	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618.sb	ENSGT00390000000378.d.b #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Mus	ANCESTRAL SPECIES	17	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00860000136082	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000000378.d.b.o #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00860000136082	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000000378.d.b.o #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a.d #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00860000136082	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000000378.d.b.o #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a.d #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Mouse	MODERN SPECIES	14	2210016L21Rik (ENSMUSG00000029559) #7	Hnf1a (ENSMUSG00000029556) #8	Sppl3 (ENSMUSG00000029550) #9	Acads (ENSMUSG00000029545) #10	Unc119b (ENSMUSG00000046562) #11	Mlec (ENSMUSG00000048578) #12	Cabp1 (ENSMUSG00000029544) #13	Pop5 (ENSMUSG00000060152) #14	Rnf10 (ENSMUSG00000041740) #15	Coq5 (ENSMUSG00000041733) #16	Dynll1 (ENSMUSG00000009013) #17	Srsf9 (ENSMUSG00000029538) #18	Gatc (ENSMUSG00000029536) #19	Triap1 (ENSMUSG00000029535) #20	Cox6a1 (ENSMUSG00000041697) #21	Msi1 (ENSMUSG00000054256) #22	Pla2g1b (ENSMUSG00000029522) #23	Sirt4 (ENSMUSG00000029524) #24	Pxn (ENSMUSG00000029528) #25	Rplp0 (ENSMUSG00000067274) #26	Gcn1 (ENSMUSG00000041638) #27	Rab35 (ENSMUSG00000029518) #28	Bicdl1 (ENSMUSG00000041609) #29	Cit (ENSMUSG00000029516) #30	Prkab1 (ENSMUSG00000029513) #31	Tmem233 (ENSMUSG00000079278) #32	Ccdc60 (ENSMUSG00000043913) #33	Hspb8 (ENSMUSG00000041548) #35	Srrm4 (ENSMUSG00000063919) #36	Suds3 (ENSMUSG00000066900) #37	Taok3 (ENSMUSG00000061288)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00860000136082	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000000378.d.b.o #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00960000191875	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.b.b.a.a.d #26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Steppe mouse	MODERN SPECIES	3377	ENSMSIG00000010364 #7	Hnf1a (ENSMSIG00000010380) #8	Sppl3 (ENSMSIG00000010421) #9	ENSMSIG00000010449	Acads (ENSMSIG00000010452) #10	Unc119b (ENSMSIG00000010473) #11	Mlec (ENSMSIG00000010508) #12	Cabp1 (ENSMSIG00000010533) #13	Pop5 (ENSMSIG00000010678) #14	Rnf10 (ENSMSIG00000010698) #15	Coq5 (ENSMSIG00000010765) #16	Srsf9 (ENSMSIG00000010795) #18	Gatc (ENSMSIG00000010809) #19	Triap1 (ENSMSIG00000010821) #20	Cox6a1 (ENSMSIG00000010830) #21	ENSMSIG00000010846 #22	ENSMSIG00000010942	ENSMSIG00000010948 #23	ENSMSIG00000011053 #24	ENSMSIG00000011114	ENSMSIG00000011129 #25	ENSMSIG00000011210 #26	Gcn1 (ENSMSIG00000011226) #27	ENSMSIG00000011351	Rab35 (ENSMSIG00000011361) #28	Bicdl1 (ENSMSIG00000011390) #29	Cit (ENSMSIG00000011444) #30	Prkab1 (ENSMSIG00000012099) #31	Tmem233 (ENSMSIG00000012120) #32	Ccdc60 (ENSMSIG00000012141) #33	Hspb8 (ENSMSIG00000012263) #35
spretus	MODERN SPECIES	14	Hnf1a (MGP_SPRETEiJ_G0028609) #8	Sppl3 (MGP_SPRETEiJ_G0028610) #9	MGP_SPRETEiJ_G0028611	Acads (MGP_SPRETEiJ_G0028612) #10	Unc119b (MGP_SPRETEiJ_G0028613) #11	Mlec (MGP_SPRETEiJ_G0028614) #12	Cabp1 (MGP_SPRETEiJ_G0028615) #13	Pop5 (MGP_SPRETEiJ_G0028616) #14	Rnf10 (MGP_SPRETEiJ_G0028617) #15	Coq5 (MGP_SPRETEiJ_G0028618) #16	Dynll1 (MGP_SPRETEiJ_G0028619) #17	Srsf9 (MGP_SPRETEiJ_G0028620) #18	Gatc (MGP_SPRETEiJ_G0028621) #19	Triap1 (MGP_SPRETEiJ_G0028622) #20	Cox6a1 (MGP_SPRETEiJ_G0028623) #21	Msi1 (MGP_SPRETEiJ_G0028624) #22	Pla2g1b (MGP_SPRETEiJ_G0028625) #23	Sirt4 (MGP_SPRETEiJ_G0028626) #24	MGP_SPRETEiJ_G0028627 #25	MGP_SPRETEiJ_G0028628 #26	Gcn1 (MGP_SPRETEiJ_G0028629) #27	Rab35 (MGP_SPRETEiJ_G0028630) #28	Bicdl1 (MGP_SPRETEiJ_G0028631) #29	Cit (MGP_SPRETEiJ_G0028632) #30	Prkab1 (MGP_SPRETEiJ_G0028633) #31	Tmem233 (MGP_SPRETEiJ_G0028634) #32	Ccdc60 (MGP_SPRETEiJ_G0028635) #33	Hspb8 (MGP_SPRETEiJ_G0028636) #35	Srrm4 (MGP_SPRETEiJ_G0028637) #36	Suds3 (MGP_SPRETEiJ_G0028638) #37	Taok3 (MGP_SPRETEiJ_G0028639)
Ryukyu mouse	MODERN SPECIES	14	Hnf1a (MGP_CAROLIEiJ_G0027611) #8	Sppl3 (MGP_CAROLIEiJ_G0027612) #9	MGP_CAROLIEiJ_G0027613	Acads (MGP_CAROLIEiJ_G0027614) #10	Unc119b (MGP_CAROLIEiJ_G0027615) #11	Mlec (MGP_CAROLIEiJ_G0027616) #12	Cabp1 (MGP_CAROLIEiJ_G0027617) #13	Pop5 (MGP_CAROLIEiJ_G0027618) #14	Rnf10 (MGP_CAROLIEiJ_G0027619) #15	Coq5 (MGP_CAROLIEiJ_G0027620) #16	Dynll1 (MGP_CAROLIEiJ_G0027621) #17	Srsf9 (MGP_CAROLIEiJ_G0027622) #18	Gatc (MGP_CAROLIEiJ_G0027623) #19	Triap1 (MGP_CAROLIEiJ_G0027624) #20	Cox6a1 (MGP_CAROLIEiJ_G0027625) #21	Msi1 (MGP_CAROLIEiJ_G0027626) #22	Pla2g1b (MGP_CAROLIEiJ_G0027627) #23	Sirt4 (MGP_CAROLIEiJ_G0027628) #24	MGP_CAROLIEiJ_G0027629 #25	MGP_CAROLIEiJ_G0027630 #26	Gcn1 (MGP_CAROLIEiJ_G0027631) #27	Rab35 (MGP_CAROLIEiJ_G0027632) #28	Cit (MGP_CAROLIEiJ_G0027633) #30	Prkab1 (MGP_CAROLIEiJ_G0027634) #31	Tmem233 (MGP_CAROLIEiJ_G0027635) #32	Ccdc60 (MGP_CAROLIEiJ_G0027636) #33	Hspb8 (MGP_CAROLIEiJ_G0027637) #35	Srrm4 (MGP_CAROLIEiJ_G0027638) #36	Suds3 (MGP_CAROLIEiJ_G0027639) #37	Taok3 (MGP_CAROLIEiJ_G0027640)	Pebp1 (MGP_CAROLIEiJ_G0027641)
Shrew mouse	MODERN SPECIES	15	Hnf1a (MGP_PahariEiJ_G0024191) #8	Sppl3 (MGP_PahariEiJ_G0024192) #9	MGP_PahariEiJ_G0024193	Acads (MGP_PahariEiJ_G0024194) #10	Unc119b (MGP_PahariEiJ_G0024195) #11	Mlec (MGP_PahariEiJ_G0024196) #12	Cabp1 (MGP_PahariEiJ_G0024197) #13	Pop5 (MGP_PahariEiJ_G0024198) #14	Rnf10 (MGP_PahariEiJ_G0024199) #15	MGP_PahariEiJ_G0024200 #16	Dynll1 (MGP_PahariEiJ_G0024201) #17	MGP_PahariEiJ_G0024202 #18	Gatc (MGP_PahariEiJ_G0024203) #19	Triap1 (MGP_PahariEiJ_G0024204) #20	Cox6a1 (MGP_PahariEiJ_G0024205) #21	Msi1 (MGP_PahariEiJ_G0024206) #22	Pla2g1b (MGP_PahariEiJ_G0024207) #23	Sirt4 (MGP_PahariEiJ_G0024208) #24	MGP_PahariEiJ_G0024209 #25	MGP_PahariEiJ_G0024210 ##26	Gcn1 (MGP_PahariEiJ_G0024211) #27	Rab35 (MGP_PahariEiJ_G0024212) #28	Bicdl1 (MGP_PahariEiJ_G0024213) #29	Cit (MGP_PahariEiJ_G0024214) #30	Prkab1 (MGP_PahariEiJ_G0024215) #31	Tmem233 (MGP_PahariEiJ_G0024216) #32	Ccdc60 (MGP_PahariEiJ_G0024217) #33	Hspb8 (MGP_PahariEiJ_G0024218) #35	Srrm4 (MGP_PahariEiJ_G0024219) #36	Suds3 (MGP_PahariEiJ_G0024220) #37	Taok3 (MGP_PahariEiJ_G0024221)
Rat	MODERN SPECIES	3	Hnf1a (ENSRNOG00000001183) #8	Sppl3 (ENSRNOG00000001178) #9	Acads (ENSRNOG00000001177) #10	Unc119b (ENSRNOG00000021725) #11	Mlec (ENSRNOG00000064601) #12	Cabp1 (ENSRNOG00000001173) #13	Pop5 (ENSRNOG00000001199) #14	Rnf10 (ENSRNOG00000001172) #15	Coq5 (ENSRNOG00000001171) #16	ENSRNOG00000068496	Dynll1 (ENSRNOG00000011222) #17	Srsf9 (ENSRNOG00000001163) #18	Gatc (ENSRNOG00000045621) #19	Triap1 (ENSRNOG00000001160) #20	Cox6a1 (ENSRNOG00000001170) #21	Msi1 (ENSRNOG00000001156) #22	Pla2g1b (ENSRNOG00000001153) #23	Sirt4 (ENSRNOG00000001151) #24	Pxn (ENSRNOG00000001149) #25	Rplp0 (ENSRNOG00000001148) ##26	Gcn1 (ENSRNOG00000021871) #27	Rab35 (ENSRNOG00000022014) #28	Bicdl1 (ENSRNOG00000056955) #29	Cit (ENSRNOG00000001143) #30	Prkab1 (ENSRNOG00000001142) #31	Tmem233 (ENSRNOG00000053974) #32	Ccdc60 (ENSRNOG00000032684) #33	Hspb8 (ENSRNOG00000022392) #35	Srrm4 (ENSRNOG00000001141) #36	Suds3 (ENSRNOG00000001139) #37	Taok3 (ENSRNOG00000001138)
Upper Galilee mountains blind mole rat	MODERN SPECIES	445	Hnf1a (ENSNGAG00000018019) #8	Sppl3 (ENSNGAG00000016114) #9	Acads (ENSNGAG00000023567) #10	Unc119b (ENSNGAG00000018814) #11	Mlec (ENSNGAG00000005925) #12	ENSNGAG00000022386 #13	Pop5 (ENSNGAG00000002594) #14	Rnf10 (ENSNGAG00000023924) #15	Coq5 (ENSNGAG00000020139) #16	ENSNGAG00000023733 #17	ENSNGAG00000013457	Srsf9 (ENSNGAG00000012738) #18	Gatc (ENSNGAG00000004734) #19	Triap1 (ENSNGAG00000023480) #20	Cox6a1 (ENSNGAG00000005868) #21	Msi1 (ENSNGAG00000014508) #22	Pla2g1b (ENSNGAG00000022899) #23	Sirt4 (ENSNGAG00000019284) #24	Pxn (ENSNGAG00000001212) #25	ENSNGAG00000024037 ##26	Gcn1 (ENSNGAG00000019286) #27	Rab35 (ENSNGAG00000007255) #28	ENSNGAG00000022874 #29
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	109	Hnf1a (ENSJJAG00000000462) #8	Sppl3 (ENSJJAG00000022924) #9	Acads (ENSJJAG00000020198) #10	Unc119b (ENSJJAG00000024182) #11	ENSJJAG00000018770 #12	ENSJJAG00000021885 #13	Pop5 (ENSJJAG00000001080) #14	Rnf10 (ENSJJAG00000018379) #15	Coq5 (ENSJJAG00000021649) #16	ENSJJAG00000020596 #17	ENSJJAG00000009686	Srsf9 (ENSJJAG00000013374) #18	Gatc (ENSJJAG00000000369) #19	ENSJJAG00000017654 #20	Cox6a1 (ENSJJAG00000022385) #21	ENSJJAG00000010463 #22	Sirt4 (ENSJJAG00000018872) #24	ENSJJAG00000024166 #25	ENSJJAG00000013250 ##26	Gcn1 (ENSJJAG00000018574) #27	Rab35 (ENSJJAG00000010646) #28	Bicdl1 (ENSJJAG00000014990) #29	Cit (ENSJJAG00000021797) #30	ENSJJAG00000003437 #31	Tmem233 (ENSJJAG00000023958) #32	Ccdc60 (ENSJJAG00000016522) #33	Hspb8 (ENSJJAG00000024220) #35	Srrm4 (ENSJJAG00000016448) #36	ENSJJAG00000000401 #37	ENSJJAG00000021003	ENSJJAG00000024022
Lesser Egyptian jerboa	MODERN SPECIES	103	ENSJJAG00000020121	Zic1 (ENSJJAG00000012204)	Zic4 (ENSJJAG00000011859)	ENSJJAG00000008994	ENSJJAG00000005647	ENSJJAG00000004591	ENSJJAG00000000877	Plscr5 (ENSJJAG00000000244)	ENSJJAG00000020887	ENSJJAG00000020283	1700057G04Rik (ENSJJAG00000020060)	ENSJJAG00000017330	ENSJJAG00000017891	Plscr4 (ENSJJAG00000017748)	Plod2 (ENSJJAG00000013305)	ENSJJAG00000010643 #22	ENSJJAG00000010488	ENSJJAG00000010214	ENSJJAG00000009762	ENSJJAG00000009483	Slc9a9 (ENSJJAG00000022538)	Chst2 (ENSJJAG00000021652)	U2surp (ENSJJAG00000021595)	Paqr9 (ENSJJAG00000019596)	ENSJJAG00000014039	Pcolce2 (ENSJJAG00000019087)	Trpc1 (ENSJJAG00000018439)	Pls1 (ENSJJAG00000017370)	Atr (ENSJJAG00000015162)	Xrn1 (ENSJJAG00000010863)	Gk5 (ENSJJAG00000002736)
Kangaroo rat	MODERN SPECIES	342	Ankrd13a (ENSDORG00000008865)	Hnf1a (ENSDORG00000007676) #8	Sppl3 (ENSDORG00000004872) #9	Acads (ENSDORG00000004871) #10	Unc119b (ENSDORG00000023526) #11	Mlec (ENSDORG00000026837) #12	ENSDORG00000028706	Pop5 (ENSDORG00000029401) #14	Rnf10 (ENSDORG00000006157) #15	ENSDORG00000029773	Coq5 (ENSDORG00000006156) #16	ENSDORG00000030011 #17	Srsf9 (ENSDORG00000013162) #18	Triap1 (ENSDORG00000013157) #20	Cox6a1 (ENSDORG00000028878) #21	Msi1 (ENSDORG00000005610) #22	Pla2g1b (ENSDORG00000005190) #23	Sirt4 (ENSDORG00000027939) #24	ENSDORG00000023577 #25	ENSDORG00000029016 #26	Gcn1 (ENSDORG00000000975) #27	Rab35 (ENSDORG00000000972) #28	Bicdl1 (ENSDORG00000000969) #29	Cit (ENSDORG00000014600) #30	Prkab1 (ENSDORG00000028447) #31	Hspb8 (ENSDORG00000013686) #35	Srrm4 (ENSDORG00000015243) #36	Suds3 (ENSDORG00000003983) #37	Taok3 (ENSDORG00000001342)	Pbp2 (ENSDORG00000027183)	Wsb2 (ENSDORG00000011782)
Rodentia_A	ANCESTRAL SPECIES	19	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000001618	ENSGT00390000000378.d.b.l #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.a.b.d ##26	ENSGT00940000170510	ENSGT00390000017839.o.b.a.b.c.a ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT01100000263696	ENSGT00390000000378.d.b.l #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.a.b.d ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37	ENSGT00940000155735
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00390000010771 #7	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000000378.d.b.l #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.a.b.d ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37	ENSGT00940000155735
Guinea pig	MODERN SPECIES	4	C12orf43 (ENSCPOG00000037839) #7	HNF1A (ENSCPOG00000007242) #8	SPPL3 (ENSCPOG00000002418) #9	ACADS (ENSCPOG00000015423) #10	UNC119B (ENSCPOG00000030623) #11	MLEC (ENSCPOG00000014377) #12	ENSCPOG00000025419 #13	POP5 (ENSCPOG00000012337) #14	RNF10 (ENSCPOG00000012331) #15	COQ5 (ENSCPOG00000031239) #16	DYNLL1 (ENSCPOG00000036786) #17	SRSF9 (ENSCPOG00000033486) #18	GATC (ENSCPOG00000026436) #19	TRIAP1 (ENSCPOG00000033275) #20	COX6A1 (ENSCPOG00000036824) #21	MSI1 (ENSCPOG00000012361) #22	PLA2G1B (ENSCPOG00000012358) #23	SIRT4 (ENSCPOG00000012355) #24	ENSCPOG00000026308	PXN (ENSCPOG00000000411) #25	ENSCPOG00000021812 ##26	GCN1 (ENSCPOG00000000406) #27	RAB35 (ENSCPOG00000000404) #28	BICDL1 (ENSCPOG00000000402) #29	CIT (ENSCPOG00000026104) #30	ENSCPOG00000015636 #31	TMEM233 (ENSCPOG00000037552) #32	CCDC60 (ENSCPOG00000015551) #33	HSPB8 (ENSCPOG00000024598) #35	SRRM4 (ENSCPOG00000003544) #36	SUDS3 (ENSCPOG00000009189) #37
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00390000010771 #7	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654 #16	ENSGT00390000000378.d.b.l #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00390000017839.o.b.a.b.d ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36	ENSGT00910000144281 #37	ENSGT00940000155735
Degu	MODERN SPECIES	120	HNF1A (ENSODEG00000007197) #8	ENSODEG00000006851	SPPL3 (ENSODEG00000007014) #9	ACADS (ENSODEG00000008710) #10	UNC119B (ENSODEG00000006951) #11	MLEC (ENSODEG00000006857) #12	ENSODEG00000006509 #13	ENSODEG00000006549 #14	RNF10 (ENSODEG00000007815) #15	COQ5 (ENSODEG00000006329) #16	ENSODEG00000006171 #17	SRSF9 (ENSODEG00000006061) #18	GATC (ENSODEG00000005919) #19	ENSODEG00000005787 #20	ENSODEG00000005584 #21	MSI1 (ENSODEG00000006328) #22	PLA2G1B (ENSODEG00000006112) #23	SIRT4 (ENSODEG00000005972) #24	ENSODEG00000005742 #25	ENSODEG00000005457 ##26	GCN1 (ENSODEG00000005719) #27	RAB35 (ENSODEG00000007219) #28	ENSODEG00000005856 #29	ENSODEG00000019184	CIT (ENSODEG00000006978) #30	PRKAB1 (ENSODEG00000006326) #31	TMEM233 (ENSODEG00000006179) #32	CCDC60 (ENSODEG00000005468) #33	HSPB8 (ENSODEG00000006631) #35	SRRM4 (ENSODEG00000006291) #36	SUDS3 (ENSODEG00000007364) #37
Long-tailed chinchilla	MODERN SPECIES	162	HNF1A (ENSCLAG00000010469) #8	SPPL3 (ENSCLAG00000013014) #9	ACADS (ENSCLAG00000008872) #10	UNC119B (ENSCLAG00000010518) #11	MLEC (ENSCLAG00000010269) #12	ENSCLAG00000008163 #13	POP5 (ENSCLAG00000007808) #14	RNF10 (ENSCLAG00000017372) #15	COQ5 (ENSCLAG00000011645) #16	ENSCLAG00000010874	DYNLL1 (ENSCLAG00000015769) #17	SRSF9 (ENSCLAG00000012289) #18	GATC (ENSCLAG00000011015) #19	TRIAP1 (ENSCLAG00000011307) #20	COX6A1 (ENSCLAG00000013008) #21	MSI1 (ENSCLAG00000011329) #22	PLA2G1B (ENSCLAG00000014353) #23	SIRT4 (ENSCLAG00000010770) #24	PXN (ENSCLAG00000016279) #25	ENSCLAG00000014722 ##26	GCN1 (ENSCLAG00000010466) #27	RAB35 (ENSCLAG00000013339) #28	BICDL1 (ENSCLAG00000012595) #29	CIT (ENSCLAG00000014860) #30	PRKAB1 (ENSCLAG00000009053) #31	TMEM233 (ENSCLAG00000013093) #32	CCDC60 (ENSCLAG00000013673) #33	HSPB8 (ENSCLAG00000011079) #35	SRRM4 (ENSCLAG00000009764) #36	SUDS3 (ENSCLAG00000012870) #37	TAOK3 (ENSCLAG00000014513)
Naked mole-rat female	MODERN SPECIES	15	SPPL3 (ENSHGLG00000009179) #9	ACADS (ENSHGLG00000012611) #10	UNC119B (ENSHGLG00000048493) #11	MLEC (ENSHGLG00000013447) #12	CABP1 (ENSHGLG00000010180) #13	POP5 (ENSHGLG00000011786) #14	RNF10 (ENSHGLG00000010890) #15	ENSHGLG00000044841	COQ5 (ENSHGLG00000038449) #16	ENSHGLG00000034830	DYNLL1 (ENSHGLG00000013536) #17	SRSF9 (ENSHGLG00000038336) #18	GATC (ENSHGLG00000011394) #19	ENSHGLG00000012057 #20	COX6A1 (ENSHGLG00000038002) #21	MSI1 (ENSHGLG00000040070) #22	PLA2G1B (ENSHGLG00000014412) #23	SIRT4 (ENSHGLG00000014746) #24	PXN (ENSHGLG00000010923) #25	RPLP0 (ENSHGLG00000011358) ##26	GCN1 (ENSHGLG00000012548) #27	RAB35 (ENSHGLG00000012703) #28	BICDL1 (ENSHGLG00000014394) #29	CIT (ENSHGLG00000010569) #30	PRKAB1 (ENSHGLG00000007003) #31	TMEM233 (ENSHGLG00000038208) #32	CCDC60 (ENSHGLG00000010014) #33	HSPB8 (ENSHGLG00000011316) #35	SRRM4 (ENSHGLG00000007830) #36	ENSHGLG00000046690	SUDS3 (ENSHGLG00000011951) #37
Sciuridae	ANCESTRAL SPECIES	24	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654.j #16	ENSGT00390000001618	ENSGT00390000000378.d.b.l #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00940000170510	ENSGT00390000017839.o.b.a.b.c.a ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Marmotini	ANCESTRAL SPECIES	73	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654.j #16	ENSGT00390000001618	ENSGT00390000000378.d.b.l #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00940000170510	ENSGT00390000017839.o.b.a.b.c.a.a ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Marmotini_b	ANCESTRAL SPECIES	101	ENSGT00940000153818.a.a #8	ENSGT00940000158101 #9	ENSGT00940000158866 #10	ENSGT00390000014595.b.c #11	ENSGT00390000016504 #12	ENSGT00940000158555 #13	ENSGT00390000012331 #14	ENSGT00390000001731 #15	ENSGT00390000001654.j #16	ENSGT00390000001618	ENSGT00390000000378.d.b.l #17	ENSGT00940000156839 #18	ENSGT00390000018351 #19	ENSGT00940000162087 #20	ENSGT00940000154612.n #21	ENSGT00940000156515 #22	ENSGT00960000193046	ENSGT00940000154885.A #23	ENSGT00940000158891 #24	ENSGT00940000158897 #25	ENSGT00940000170510	ENSGT00390000017839.o.b.a.b.c.a.a.a ##26	ENSGT00940000153612.B #27	ENSGT00940000158557 #28	ENSGT00940000157442 #29	ENSGT01030000234517.E #30	ENSGT00940000155307.b #31	ENSGT00940000162372 #32	ENSGT00390000015428 #33	ENSGT00940000160605 #35	ENSGT00730000111247 #36
Squirrel	MODERN SPECIES	268	C12orf43 (ENSSTOG00000004743) #7	HNF1A (ENSSTOG00000004719) #8	SPPL3 (ENSSTOG00000005019) #9	ACADS (ENSSTOG00000028932) #10	ENSSTOG00000022751 #11	MLEC (ENSSTOG00000003095) #12	ENSSTOG00000027234 #13	POP5 (ENSSTOG00000012577) #14	RNF10 (ENSSTOG00000012565) #15	COQ5 (ENSSTOG00000012560) #16	DYNLL1 (ENSSTOG00000026447) #17	SRSF9 (ENSSTOG00000007344) #18	GATC (ENSSTOG00000025740) #19	TRIAP1 (ENSSTOG00000012553) #20	COX6A1 (ENSSTOG00000023604) #21	MSI1 (ENSSTOG00000009799) #22	PLA2G1B (ENSSTOG00000004258) #23	SIRT4 (ENSSTOG00000009795) #24	ENSSTOG00000014093 #25	ENSSTOG00000011327 ##26	GCN1 (ENSSTOG00000014045) #27	RAB35 (ENSSTOG00000014038) #28	BICDL1 (ENSSTOG00000014021) #29	CIT (ENSSTOG00000008634) #30	PRKAB1 (ENSSTOG00000008615) #31	ENSSTOG00000025916 #35	SRRM4 (ENSSTOG00000026642) #36	SUDS3 (ENSSTOG00000024189) #37	TAOK3 (ENSSTOG00000024483)	ENSSTOG00000004085	TRAFD1 (ENSSTOG00000005726)
Arctic ground squirrel	MODERN SPECIES	290	HNF1A (ENSUPAG00010016704) #8	SPPL3 (ENSUPAG00010016723) #9	ACADS (ENSUPAG00010016764) #10	ENSUPAG00010016786 #11	MLEC (ENSUPAG00010016823) #12	CABP1 (ENSUPAG00010016831) #13	POP5 (ENSUPAG00010016859) #14	RNF10 (ENSUPAG00010016864) #15	COQ5 (ENSUPAG00010016972) #16	ENSUPAG00010016987	DYNLL1 (ENSUPAG00010016994) #17	SRSF9 (ENSUPAG00010016997) #18	GATC (ENSUPAG00010017011) #19	TRIAP1 (ENSUPAG00010017017) #20	COX6A1 (ENSUPAG00010017023) #21	MSI1 (ENSUPAG00010017036) #22	ENSUPAG00010017050	PLA2G1B (ENSUPAG00010017052) #23	SIRT4 (ENSUPAG00010017061) #24	PXN (ENSUPAG00010017089) #25	ENSUPAG00010017112	ENSUPAG00010017116 ##26	GCN1 (ENSUPAG00010017122) #27	RAB35 (ENSUPAG00010017163) #28	BICDL1 (ENSUPAG00010017174) #29	CIT (ENSUPAG00010017192) #30	PRKAB1 (ENSUPAG00010017447) #31	TMEM233 (ENSUPAG00010017457) #32	CCDC60 (ENSUPAG00010017462) #33	HSPB8 (ENSUPAG00010017480) #35	SRRM4 (ENSUPAG00010017495) #36
Alpin marmot	MODERN SPECIES	101	C12orf43 (ENSMMMG00000020954) #7	HNF1A (ENSMMMG00000020965) #8	SPPL3 (ENSMMMG00000020976) #9	ACADS (ENSMMMG00000020994) #10	UNC119B (ENSMMMG00000020999) #11	MLEC (ENSMMMG00000021005) #12	ENSMMMG00000021011 #13	POP5 (ENSMMMG00000021028) #14	RNF10 (ENSMMMG00000021037) #15	COQ5 (ENSMMMG00000021065) #16	DYNLL1 (ENSMMMG00000021076) #17	SRSF9 (ENSMMMG00000021084) #18	GATC (ENSMMMG00000021090) #19	ENSMMMG00000021094 #20	COX6A1 (ENSMMMG00000021098) #21	MSI1 (ENSMMMG00000021106) #22	PLA2G1B (ENSMMMG00000021113) #23	SIRT4 (ENSMMMG00000021122) #24	ENSMMMG00000021140 #25	ENSMMMG00000021161	ENSMMMG00000021163 ##26	GCN1 (ENSMMMG00000021170) #27	RAB35 (ENSMMMG00000021212) #28	BICDL1 (ENSMMMG00000021218) #29	CIT (ENSMMMG00000021230) #30	PRKAB1 (ENSMMMG00000021359) #31	TMEM233 (ENSMMMG00000021361) #32	CCDC60 (ENSMMMG00000021368) #33	HSPB8 (ENSMMMG00000021377) #35	SRRM4 (ENSMMMG00000021383) #36	SUDS3 (ENSMMMG00000021390) #37
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005007021 #7	HNF1A (ENSSVLG00005007118) #8	SPPL3 (ENSSVLG00005007248) #9	ACADS (ENSSVLG00005007301) #10	UNC119B (ENSSVLG00005007337) #11	MLEC (ENSSVLG00005007381) #12	CABP1 (ENSSVLG00005007451) #13	POP5 (ENSSVLG00005007552) #14	RNF10 (ENSSVLG00005007641) #15	COQ5 (ENSSVLG00005007727) #16	DYNLL1 (ENSSVLG00005007794) #17	SRSF9 (ENSSVLG00005007838) #18	GATC (ENSSVLG00005007876) #19	ENSSVLG00005007900 #20	COX6A1 (ENSSVLG00005007927) #21	MSI1 (ENSSVLG00005007951) #22	PLA2G1B (ENSSVLG00005008025) #23	SIRT4 (ENSSVLG00005008089) #24	PXN (ENSSVLG00005008164) #25	ENSSVLG00005008367 ##26	GCN1 (ENSSVLG00005008536) #27	ENSSVLG00005008862 #28	BICDL1 (ENSSVLG00005008936) #29	ENSSVLG00005009004	CIT (ENSSVLG00005009150) #30	ENSSVLG00005009745 #31	TMEM233 (ENSSVLG00005009774) #32	CCDC60 (ENSSVLG00005009813) #33	HSPB8 (ENSSVLG00005009960) #35	SRRM4 (ENSSVLG00005009999) #36	SUDS3 (ENSSVLG00005010109) #37