Gnathostomata	ANCESTRAL SPECIES																	ENSGT00710000106790 #22
Euteleostomi	ANCESTRAL SPECIES	1033															ENSGT00390000007438 #21	ENSGT00710000106790 #22
Sarcopterygii	ANCESTRAL SPECIES	764														ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22
Tetrapoda	ANCESTRAL SPECIES	234														ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28
Amniota	ANCESTRAL SPECIES	37	ENSGT00840000132219	ENSGT00940000167286	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00390000007058	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37	ENSGT00390000016277.b
Mammalia	ANCESTRAL SPECIES	55	ENSGT00940000159432.C #9	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b
Theria	ANCESTRAL SPECIES	24	ENSGT00940000159432.C #9	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Eutheria	ANCESTRAL SPECIES	8	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00910000148211
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Equus	ANCESTRAL SPECIES	45	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.e.a.b #37
Donkey	MODERN SPECIES	11	ZFHX2 (ENSEASG00005011805) #7	NGDN (ENSEASG00005011793) #8	MYH7 (ENSEASG00005011771) #9	MYH6 (ENSEASG00005030035) #10	CMTM5 (ENSEASG00005011759) #11	EFS (ENSEASG00005011755) #12	SLC22A17 (ENSEASG00005011725) #13	PABPN1 (ENSEASG00005011716) #14	BCL2L2 (ENSEASG00005024049) #15	HOMEZ (ENSEASG00005011711) #16	RNF212B (ENSEASG00005011710) #17	SLC7A8 (ENSEASG00005011709) #18	CEBPE (ENSEASG00005011707) #19	CIROP (ENSEASG00005027450) #20	C14orf119 (ENSEASG00005025427) #21	ACIN1 (ENSEASG00005011704) #22	CDH24 (ENSEASG00005011703) #23	PSMB11 (ENSEASG00005011702) #24	PSMB5 (ENSEASG00005011701) #25	C14orf93 (ENSEASG00005011700) #26	AJUBA (ENSEASG00005011699) #27	HAUS4 (ENSEASG00005011698) #28	PRMT5 (ENSEASG00005011697) #29	RBM23 (ENSEASG00005011696) #30	REM2 (ENSEASG00005011695) #31	LRP10 (ENSEASG00005011693) #32	MMP14 (ENSEASG00005011691) #33	MRPL52 (ENSEASG00005011690) #34	SLC7A7 (ENSEASG00005011689) #35	OXA1L (ENSEASG00005011687) #36	ENSEASG00005031145 #37
Horse	MODERN SPECIES		ZFHX2 (ENSECAG00000013939) #7	THTPA (ENSECAG00000014559)	NGDN (ENSECAG00000006081) #8	MYH7 (ENSECAG00000019844) #9	MYH6 (ENSECAG00000051991) #10	CMTM5 (ENSECAG00000053119) #11	EFS (ENSECAG00000026863) #12	SLC22A17 (ENSECAG00000013169) #13	PABPN1 (ENSECAG00000011652) #14	HOMEZ (ENSECAG00000010514) #16	RNF212B (ENSECAG00000026910) #17	SLC7A8 (ENSECAG00000013723) #18	CEBPE (ENSECAG00000012883) #19	CIROP (ENSECAG00000042315) #20	C1H14orf119 (ENSECAG00000011537) #21	ACIN1 (ENSECAG00000021097) #22	CDH24 (ENSECAG00000019730) #23	PSMB5 (ENSECAG00000017123) #25	C1H14orf93 (ENSECAG00000015564) #26	AJUBA (ENSECAG00000009971) #27	PSMB11 (ENSECAG00000004095) #24	HAUS4 (ENSECAG00000007197) #28	PRMT5 (ENSECAG00000014516) #29	RBM23 (ENSECAG00000009910) #30	REM2 (ENSECAG00000009873) #31	LRP10 (ENSECAG00000022955) #32	MMP14 (ENSECAG00000008351) #33	MRPL52 (ENSECAG00000000019) #34	SLC7A7 (ENSECAG00000001058) #35	OXA1L (ENSECAG00000015615) #36	ENSECAG00000047830 #37
Chiroptera	ANCESTRAL SPECIES	34	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Microchiroptera	ANCESTRAL SPECIES	29	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Greater horseshoe bat	MODERN SPECIES	24	MYH7 (ENSRFEG00010002137) #9	MYH6 (ENSRFEG00010002084) #10	CMTM5 (ENSRFEG00010002007) #11	IL25 (ENSRFEG00010001964)	EFS (ENSRFEG00010001913) #12	SLC22A17 (ENSRFEG00010001868) #13	PABPN1 (ENSRFEG00010001796) #14	PPP1R3E (ENSRFEG00010001771)	HOMEZ (ENSRFEG00010001759) #16	RNF212B (ENSRFEG00010001733) #17	SLC7A8 (ENSRFEG00010001689) #18	CEBPE (ENSRFEG00010001653) #19	CIROP (ENSRFEG00010001605) #20	C14orf119 (ENSRFEG00010001593) #21	ENSRFEG00010001579	ACIN1 (ENSRFEG00010001457) #22	CDH24 (ENSRFEG00010001405) #23	PSMB11 (ENSRFEG00010001392) #24	PSMB5 (ENSRFEG00010001359) #25	C14orf93 (ENSRFEG00010001313) #26	AJUBA (ENSRFEG00010001220) #27	PRMT5 (ENSRFEG00010001074) #29	RBM23 (ENSRFEG00010000986) #30	REM2 (ENSRFEG00010000938) #31	LRP10 (ENSRFEG00010000869) #32	MMP14 (ENSRFEG00010000831) #33	MRPL52 (ENSRFEG00010000802) #34	SLC7A7 (ENSRFEG00010000765) #35	OXA1L (ENSRFEG00010000726) #36	ENSRFEG00010000700	ENSRFEG00010000692 #37
Microbat	MODERN SPECIES	1234	ENSMLUG00000006067	ENSMLUG00000017215 #10	CMTM5 (ENSMLUG00000017212) #11	IL25 (ENSMLUG00000017210)	EFS (ENSMLUG00000017206) #12	SLC22A17 (ENSMLUG00000017205) #13	ENSMLUG00000003800 #14	ENSMLUG00000004928 #15	PPP1R3E (ENSMLUG00000023478)	HOMEZ (ENSMLUG00000004922) #16	RNF212B (ENSMLUG00000023202) #17	ENSMLUG00000028154	SLC7A8 (ENSMLUG00000004913) #18	CEBPE (ENSMLUG00000030209) #19	C14orf119 (ENSMLUG00000004911) #21	ACIN1 (ENSMLUG00000004891) #22	CDH24 (ENSMLUG00000004874) #23	PSMB11 (ENSMLUG00000014282) #24	PSMB5 (ENSMLUG00000014281) #25	C14orf93 (ENSMLUG00000014274) #26	AJUBA (ENSMLUG00000012944) #27	HAUS4 (ENSMLUG00000012934) #28	PRMT5 (ENSMLUG00000012929) #29	RBM23 (ENSMLUG00000012923) #30	REM2 (ENSMLUG00000012919) #31	LRP10 (ENSMLUG00000012915) #32	MMP14 (ENSMLUG00000012908) #33	MRPL52 (ENSMLUG00000012904) #34	SLC7A7 (ENSMLUG00000012899) #35	OXA1L (ENSMLUG00000012893) #36	ENSMLUG00000028266
Megabat	MODERN SPECIES	1524																ACIN1 (ENSPVAG00000013806) #22	CDH24 (ENSPVAG00000013803) #23	PSMB11 (ENSPVAG00000013801) #24	PSMB5 (ENSPVAG00000013800) #25	C14orf93 (ENSPVAG00000013798) #26	AJUBA (ENSPVAG00000013795) #27	HAUS4 (ENSPVAG00000013790) #28	PRMT5 (ENSPVAG00000013786) #29	RBM23 (ENSPVAG00000013785) #30	REM2 (ENSPVAG00000013784) #31	LRP10 (ENSPVAG00000013783) #32	MMP14 (ENSPVAG00000013782) #33	MRPL52 (ENSPVAG00000013780) #34	SLC7A7 (ENSPVAG00000013778) #35	OXA1L (ENSPVAG00000013777) #36
Carnivora	ANCESTRAL SPECIES		ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000154805.b.g #10	ENSGT00840000132219	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000154805.b.g #10	ENSGT00840000132219	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438.o.b #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Ursidae	ANCESTRAL SPECIES	10	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438.o.b #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841.j #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Ursus	ANCESTRAL SPECIES	140	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438.o.b #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841.j #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Polar bear	MODERN SPECIES	427	ENSUMAG00000014795 #7	NGDN (ENSUMAG00000014789) #8	ENSUMAG00000014781	MYH7 (ENSUMAG00000014664) #9	ENSUMAG00000014605	MYH6 (ENSUMAG00000014333) #10	CMTM5 (ENSUMAG00000014306) #11	IL25 (ENSUMAG00000014304)	EFS (ENSUMAG00000014296) #12	SLC22A17 (ENSUMAG00000014290) #13	PABPN1 (ENSUMAG00000014288) #14	HOMEZ (ENSUMAG00000014285) #16	SLC7A8 (ENSUMAG00000014195) #18	CEBPE (ENSUMAG00000014178) #19	ENSUMAG00000014175 #21	ACIN1 (ENSUMAG00000014156) #22	CDH24 (ENSUMAG00000014114) #23	ENSUMAG00000014103 #24	PSMB5 (ENSUMAG00000014101) #25	C14orf93 (ENSUMAG00000014095) #26	ENSUMAG00000014092 #27	HAUS4 (ENSUMAG00000014089) #28	PRMT5 (ENSUMAG00000014079) #29	RBM23 (ENSUMAG00000014075) #30	REM2 (ENSUMAG00000014074) #31	MMP14 (ENSUMAG00000014016) #33	ENSUMAG00000014007 #34	SLC7A7 (ENSUMAG00000013991) #35	OXA1L (ENSUMAG00000013987) #36	ENSUMAG00000013983 #37	ABHD4 (ENSUMAG00000013975)
American black bear	MODERN SPECIES	1288					CMTM5 (ENSUAMG00000024393) #11	IL25 (ENSUAMG00000024394)	EFS (ENSUAMG00000024396) #12	SLC22A17 (ENSUAMG00000024397) #13	PABPN1 (ENSUAMG00000024460) #14	BCL2L2 (ENSUAMG00000024462) #15	PPP1R3E (ENSUAMG00000024464)	HOMEZ (ENSUAMG00000024467) #16	SLC7A8 (ENSUAMG00000024471) #18	CEBPE (ENSUAMG00000024473) #19	C14orf119 (ENSUAMG00000024474) #21	ACIN1 (ENSUAMG00000024475) #22
Giant Panda	MODERN SPECIES	12	ZFHX2 (ENSAMEG00000016656) #7	NGDN (ENSAMEG00000016660) #8	ENSAMEG00000026731 #9	CMTM5 (ENSAMEG00000016811) #11	IL25 (ENSAMEG00000026796)	EFS (ENSAMEG00000016824) #12	SLC22A17 (ENSAMEG00000016829) #13	PABPN1 (ENSAMEG00000007048) #14	PPP1R3E (ENSAMEG00000028566)	HOMEZ (ENSAMEG00000007717) #16	RNF212B (ENSAMEG00000007711) #17	SLC7A8 (ENSAMEG00000007631) #18	CEBPE (ENSAMEG00000024230) #19	CIROP (ENSAMEG00000024817) #20	ENSAMEG00000028908 #21	ACIN1 (ENSAMEG00000007576) #22	CDH24 (ENSAMEG00000007481) #23	ENSAMEG00000030268 #24	PSMB5 (ENSAMEG00000028497) #25	C14orf93 (ENSAMEG00000007462) #26	AJUBA (ENSAMEG00000007445) #27	HAUS4 (ENSAMEG00000007432) #28	PRMT5 (ENSAMEG00000007355) #29	RBM23 (ENSAMEG00000007322) #30	REM2 (ENSAMEG00000007306) #31	LRP10 (ENSAMEG00000007296) #32	MMP14 (ENSAMEG00000007272) #33	MRPL52 (ENSAMEG00000029738) #34	SLC7A7 (ENSAMEG00000007223) #35	OXA1L (ENSAMEG00000007188) #36	ENSAMEG00000007183 #37
Mustelinae	ANCESTRAL SPECIES	32	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438.o.b #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.a #37
Ferret	MODERN SPECIES	210	NGDN (ENSMPUG00000006439) #8	ENSMPUG00000006447 #10	ENSMPUG00000006456 #10	CMTM5 (ENSMPUG00000006680) #11	IL25 (ENSMPUG00000006724)	EFS (ENSMPUG00000006742) #12	SLC22A17 (ENSMPUG00000006766) #13	PABPN1 (ENSMPUG00000006775) #14	BCL2L2 (ENSMPUG00000006780) #15	PPP1R3E (ENSMPUG00000006785)	RNF212B (ENSMPUG00000006790) #17	HOMEZ (ENSMPUG00000006797) #16	SLC7A8 (ENSMPUG00000006807) #18	CEBPE (ENSMPUG00000006815) #19	ENSMPUG00000006818 #21	ACIN1 (ENSMPUG00000006822) #22	CDH24 (ENSMPUG00000006830) #23	PSMB11 (ENSMPUG00000018875) #24	PSMB5 (ENSMPUG00000007019) #25	C14orf93 (ENSMPUG00000007064) #26	AJUBA (ENSMPUG00000007116) #27	HAUS4 (ENSMPUG00000007129) #28	PRMT5 (ENSMPUG00000007137) #29	RBM23 (ENSMPUG00000007151) #30	REM2 (ENSMPUG00000007167) #31	LRP10 (ENSMPUG00000007201) #32	MMP14 (ENSMPUG00000007212) #33	SLC7A7 (ENSMPUG00000007228) #35	MRPL52 (ENSMPUG00000007234) #34	OXA1L (ENSMPUG00000007269) #36	ENSMPUG00000018879 #37
American mink	MODERN SPECIES	148	MYH7 (ENSNVIG00000021547) #9	MYH6 (ENSNVIG00000021507) #10	E9PH91 (ENSNVIG00000021433) #11	IL25 (ENSNVIG00000021426)	EFS (ENSNVIG00000021404) #12	SLC22A17 (ENSNVIG00000021370) #13	ENSNVIG00000021356 #14	BCL2L2 (ENSNVIG00000021348) #15	PPP1R3E (ENSNVIG00000021331)	HOMEZ (ENSNVIG00000021322) #16	RNF212B (ENSNVIG00000021300) #17	SLC7A8 (ENSNVIG00000021267) #18	CEBPE (ENSNVIG00000021255) #19	CIROP (ENSNVIG00000021223) #20	ENSNVIG00000021211 #21	ACIN1 (ENSNVIG00000021153) #22	CDH24 (ENSNVIG00000021117) #23	PSMB11 (ENSNVIG00000021111) #24	PSMB5 (ENSNVIG00000021100) #25	C14orf93 (ENSNVIG00000021065) #26	AJUBA (ENSNVIG00000021037) #27	HAUS4 (ENSNVIG00000020969) #28	PRMT5 (ENSNVIG00000020831) #29	RBM23 (ENSNVIG00000020783) #30	REM2 (ENSNVIG00000020767) #31	LRP10 (ENSNVIG00000020742) #32	MMP14 (ENSNVIG00000020727) #33	MRPL52 (ENSNVIG00000020698) #34	SLC7A7 (ENSNVIG00000020676) #35	OXA1L (ENSNVIG00000020650) #36	ENSNVIG00000020641 #37
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00390000008765.nb	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438.n #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00390000008765.nb	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438.n #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Dog	MODERN SPECIES	36	ZFHX2 (ENSCAFG00845004064) #7	NGDN (ENSCAFG00845004005) #8	MYH7 (ENSCAFG00845003780) #9	CMTM5 (ENSCAFG00845003612) #11	EFS (ENSCAFG00845003555) #12	SLC22A17 (ENSCAFG00845003526) #13	PABPN1 (ENSCAFG00845003335) #14	PPP1R3E (ENSCAFG00845003307)	HOMEZ (ENSCAFG00845003299) #16	RNF212B (ENSCAFG00845003276) #17	ENSCAFG00845003263	SLC7A8 (ENSCAFG00845003216) #18	CEBPE (ENSCAFG00845003168) #19	CIROP (ENSCAFG00845003141) #20	C8H14orf119 (ENSCAFG00845003119) #21	ACIN1 (ENSCAFG00845002998) #22	CDH24 (ENSCAFG00845002943) #23	PSMB11 (ENSCAFG00845002924) #24	PSMB5 (ENSCAFG00845002902) #25	C8H14orf93 (ENSCAFG00845002874) #26	AJUBA (ENSCAFG00845002700) #27	PRMT5 (ENSCAFG00845002461) #29	RBM23 (ENSCAFG00845002223) #30	LRP10 (ENSCAFG00845002154) #32	MMP14 (ENSCAFG00845002121) #33	MRPL52 (ENSCAFG00845002067) #34	ENSCAFG00845002028 #35	OXA1L (ENSCAFG00845002006) #36	OR6E1 (ENSCAFG00845001980) #37	ENSCAFG00845001954	ABHD4 (ENSCAFG00845001920)
Dingo	MODERN SPECIES	161	MYH6 (ENSCAFG00020006460) #10	ENSCAFG00020006593	CMTM5 (ENSCAFG00020006603) #11	IL25 (ENSCAFG00020006621)	EFS (ENSCAFG00020006626) #12	SLC22A17 (ENSCAFG00020006632) #13	ENSCAFG00020006651 #14	BCL2L2 (ENSCAFG00020006663) #15	PPP1R3E (ENSCAFG00020006668)	HOMEZ (ENSCAFG00020006676) #16	ENSCAFG00020006681	ENSCAFG00020006707	SLC7A8 (ENSCAFG00020006729) #18	CEBPE (ENSCAFG00020007607) #19	ENSCAFG00020007615 #21	ACIN1 (ENSCAFG00020007637) #22	CDH24 (ENSCAFG00020007655) #23	PSMB11 (ENSCAFG00020007662) #24	PSMB5 (ENSCAFG00020007663) #25	C14orf93 (ENSCAFG00020007664) #26	AJUBA (ENSCAFG00020007676) #27	HAUS4 (ENSCAFG00020007681) #28	PRMT5 (ENSCAFG00020007687) #29	ENSCAFG00020007707	RBM23 (ENSCAFG00020007711) #30	REM2 (ENSCAFG00020007720) #31	LRP10 (ENSCAFG00020007743) #32	MMP14 (ENSCAFG00020007758) #33	MRPL52 (ENSCAFG00020007772) #34	SLC7A7 (ENSCAFG00020007817) #35	OXA1L (ENSCAFG00020007825) #36
Red fox	MODERN SPECIES	65	MYH7 (ENSVVUG00000025411) #9	NGDN (ENSVVUG00000025104) #8	CMTM5 (ENSVVUG00000025101) #11	MYH6 (ENSVVUG00000020227) #10	IL25 (ENSVVUG00000019980)	EFS (ENSVVUG00000019976) #12	SLC22A17 (ENSVVUG00000019919) #13	PABPN1 (ENSVVUG00000019912) #14	PPP1R3E (ENSVVUG00000019910)	HOMEZ (ENSVVUG00000019908) #16	RNF212B (ENSVVUG00000019907) #17	ENSVVUG00000019904	SLC7A8 (ENSVVUG00000019902) #18	CEBPE (ENSVVUG00000019900) #19	CUNH14orf119 (ENSVVUG00000019893) #21	ACIN1 (ENSVVUG00000019885) #22	CDH24 (ENSVVUG00000019873) #23	PSMB11 (ENSVVUG00000019870) #24	PSMB5 (ENSVVUG00000019863) #25	CUNH14orf93 (ENSVVUG00000019857) #26	AJUBA (ENSVVUG00000019846) #27	HAUS4 (ENSVVUG00000019820) #28	PRMT5 (ENSVVUG00000019817) #29	RBM23 (ENSVVUG00000019815) #30	REM2 (ENSVVUG00000019805) #31	LRP10 (ENSVVUG00000019801) #32	MMP14 (ENSVVUG00000019794) #33	ENSVVUG00000019793 #34	SLC7A7 (ENSVVUG00000019789) #35	OXA1L (ENSVVUG00000019787) #36	ENSVVUG00000019784 #37
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134.e #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.c #37
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134.e #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.c #37
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134.e #35	ENSGT00530000063506.B #36	ENSGT00910000148211
leopard	MODERN SPECIES	124	MYH6 (ENSPPRG00000016769) #10	ENSPPRG00000015359	CMTM5 (ENSPPRG00000014733) #11	IL25 (ENSPPRG00000012482)	EFS (ENSPPRG00000012112) #12	SLC22A17 (ENSPPRG00000011266) #13	PABPN1 (ENSPPRG00000010567) #14	BCL2L2 (ENSPPRG00000009965) #15	PPP1R3E (ENSPPRG00000009892)	HOMEZ (ENSPPRG00000009790) #16	RNF212B (ENSPPRG00000009712) #17	SLC7A8 (ENSPPRG00000009279) #18	CEBPE (ENSPPRG00000007809) #19	CIROP (ENSPPRG00000007607) #20	C14orf119 (ENSPPRG00000018397) #21	ACIN1 (ENSPPRG00000006713) #22	CDH24 (ENSPPRG00000000260) #23	PSMB11 (ENSPPRG00000018049) #24	PSMB5 (ENSPPRG00000015249) #25	C14orf93 (ENSPPRG00000013008) #26	ENSPPRG00000011047 #27	HAUS4 (ENSPPRG00000009505) #28	PRMT5 (ENSPPRG00000003162) #29	RBM23 (ENSPPRG00000023344) #30	REM2 (ENSPPRG00000024243) #31	LRP10 (ENSPPRG00000024480) #32	MMP14 (ENSPPRG00000022165) #33	MRPL52 (ENSPPRG00000018903) #34	ENSPPRG00000013920 #35	OXA1L (ENSPPRG00000013399) #36
lion	MODERN SPECIES	6	MYH7 (ENSPLOG00000013630) #9	MYH6 (ENSPLOG00000013322) #10	CMTM5 (ENSPLOG00000013116) #11	IL25 (ENSPLOG00000013020)	EFS (ENSPLOG00000012823) #12	SLC22A17 (ENSPLOG00000012577) #13	PABPN1 (ENSPLOG00000012491) #14	BCL2L2 (ENSPLOG00000012453) #15	PPP1R3E (ENSPLOG00000012413)	HOMEZ (ENSPLOG00000012381) #16	RNF212B (ENSPLOG00000012222) #17	SLC7A8 (ENSPLOG00000012071) #18	CEBPE (ENSPLOG00000012017) #19	CIROP (ENSPLOG00000011882) #20	C14orf119 (ENSPLOG00000011859) #21	ACIN1 (ENSPLOG00000010973) #22	CDH24 (ENSPLOG00000010755) #23	PSMB11 (ENSPLOG00000010711) #24	PSMB5 (ENSPLOG00000010681) #25	C14orf93 (ENSPLOG00000010622) #26	AJUBA (ENSPLOG00000010481) #27	HAUS4 (ENSPLOG00000010383) #28	PRMT5 (ENSPLOG00000010113) #29	RBM23 (ENSPLOG00000009954) #30	REM2 (ENSPLOG00000009863) #31	LRP10 (ENSPLOG00000009786) #32	MMP14 (ENSPLOG00000009721) #33	MRPL52 (ENSPLOG00000009555) #34	SLC7A7 (ENSPLOG00000009515) #35	OXA1L (ENSPLOG00000009362) #36	ENSPLOG00000009334
Tiger	MODERN SPECIES	578	ENSPTIG00000009823	MYH7 (ENSPTIG00000004948) #9	MYH6 (ENSPTIG00000015600) #10	CMTM5 (ENSPTIG00000012480) #11	IL25 (ENSPTIG00000011136)	EFS (ENSPTIG00000009251) #12	SLC22A17 (ENSPTIG00000005634) #13	PABPN1 (ENSPTIG00000001063) #14	BCL2L2 (ENSPTIG00000000034) #15	HOMEZ (ENSPTIG00000019338) #16	RNF212B (ENSPTIG00000018534) #17	SLC7A8 (ENSPTIG00000015656) #18	CEBPE (ENSPTIG00000015005) #19	CIROP (ENSPTIG00000013858) #20	C14orf119 (ENSPTIG00000000313) #21	ACIN1 (ENSPTIG00000021540) #22	CDH24 (ENSPTIG00000017572) #23	PSMB11 (ENSPTIG00000007360) #24	PSMB5 (ENSPTIG00000016003) #25	C14orf93 (ENSPTIG00000013979) #26	ENSPTIG00000013120 #27	HAUS4 (ENSPTIG00000008583) #28	PRMT5 (ENSPTIG00000014268) #29	RBM23 (ENSPTIG00000007831) #30	REM2 (ENSPTIG00000021000) #31	LRP10 (ENSPTIG00000019760) #32	MMP14 (ENSPTIG00000018375) #33	MRPL52 (ENSPTIG00000015624) #34	SLC7A7 (ENSPTIG00000013224) #35	OXA1L (ENSPTIG00000011174) #36	ENSPTIG00000006761 #37
Cat	MODERN SPECIES	237	ENSFCAG00000040035	MYH7 (ENSFCAG00000009092) #10	CMTM5 (ENSFCAG00000009089) #11	IL25 (ENSFCAG00000029269)	EFS (ENSFCAG00000024502) #12	SLC22A17 (ENSFCAG00000009086) #13	PABPN1 (ENSFCAG00000031922) #14	BCL2L2 (ENSFCAG00000040747) #15	PPP1R3E (ENSFCAG00000044721)	HOMEZ (ENSFCAG00000033964) #16	RNF212B (ENSFCAG00000018703) #17	SLC7A8 (ENSFCAG00000002335) #18	CEBPE (ENSFCAG00000002334) #19	CIROP (ENSFCAG00000045976) #20	CB3H14orf119 (ENSFCAG00000002333) #21	ACIN1 (ENSFCAG00000002332) #22	CDH24 (ENSFCAG00000002331) #23	PSMB11 (ENSFCAG00000008111) #24	PSMB5 (ENSFCAG00000023593) #25	CB3H14orf93 (ENSFCAG00000006642) #26	AJUBA (ENSFCAG00000006641) #27	HAUS4 (ENSFCAG00000006639) #28	PRMT5 (ENSFCAG00000006636) #29	REM2 (ENSFCAG00000006630) #31	LRP10 (ENSFCAG00000006628) #32	MMP14 (ENSFCAG00000006626) #33	MRPL52 (ENSFCAG00000006625) #34	SLC7A7 (ENSFCAG00000024866) #35	OXA1L (ENSFCAG00000006623) #36	ENSFCAG00000022681 #37	ENSFCAG00000052623 #37
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Suina	ANCESTRAL SPECIES	30	ENSGT00500000044922.e #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841.p #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Pig	DUPLICATION
Pig	MODERN SPECIES	15	ZFHX2 (ENSSSCG00000040339) #7	ENSSSCG00000002020 #8	MYH7 (ENSSSCG00000053614) #9	MYH6 (ENSSSCG00000002029) #10	CMTM5 (ENSSSCG00000002028) #11	IL25 (ENSSSCG00000057348)	EFS (ENSSSCG00000002026) #12	SLC22A17 (ENSSSCG00000002025) #13	PABPN1 (ENSSSCG00000054284) #14	BCL2L2 (ENSSSCG00000002023) #15	PPP1R3E (ENSSSCG00000057418)	HOMEZ (ENSSSCG00000028190) #16	SLC7A8 (ENSSSCG00000002032) #18	CEBPE (ENSSSCG00000002033) #19	C14orf119 (ENSSSCG00000002035) #21	ENSSSCG00000056336 #22	ENSSSCG00000002034 #22	CDH24 (ENSSSCG00000002037) #23	PSMB11 (ENSSSCG00000002038) #24	ENSSSCG00000002036 #25	C14orf93 (ENSSSCG00000031452) #26	AJUBA (ENSSSCG00000029201) #27	HAUS4 (ENSSSCG00000033178) #28	PRMT5 (ENSSSCG00000030045) #29	RBM23 (ENSSSCG00000026700) #30	REM2 (ENSSSCG00000031874) #31	LRP10 (ENSSSCG00000034465) #32	MMP14 (ENSSSCG00000002039) #33	MRPL52 (ENSSSCG00000002040) #34	SLC7A7 (ENSSSCG00000002041) #35	OXA1L (ENSSSCG00000002042) #36
Pig	MODERN SPECIES	15	ENSSSCG00000002020 #8	MYH7 (ENSSSCG00000053614) #9	MYH6 (ENSSSCG00000002029) #10	CMTM5 (ENSSSCG00000002028) #11	IL25 (ENSSSCG00000057348)	EFS (ENSSSCG00000002026) #12	SLC22A17 (ENSSSCG00000002025) #13	PABPN1 (ENSSSCG00000054284) #14	BCL2L2 (ENSSSCG00000002023) #15	PPP1R3E (ENSSSCG00000057418)	HOMEZ (ENSSSCG00000028190) #16	SLC7A8 (ENSSSCG00000002032) #18	CEBPE (ENSSSCG00000002033) #19	C14orf119 (ENSSSCG00000002035) #21	ENSSSCG00000056336 #22	ENSSSCG00000002034 #22	CDH24 (ENSSSCG00000002037) #23	PSMB11 (ENSSSCG00000002038) #24	ENSSSCG00000002036 #25	C14orf93 (ENSSSCG00000031452) #26	AJUBA (ENSSSCG00000029201) #27	HAUS4 (ENSSSCG00000033178) #28	PRMT5 (ENSSSCG00000030045) #29	RBM23 (ENSSSCG00000026700) #30	REM2 (ENSSSCG00000031874) #31	LRP10 (ENSSSCG00000034465) #32	MMP14 (ENSSSCG00000002039) #33	MRPL52 (ENSSSCG00000002040) #34	SLC7A7 (ENSSSCG00000002041) #35	OXA1L (ENSSSCG00000002042) #36	ENSSSCG00000059245 #37
Chacoan peccary	MODERN SPECIES	884	ZFHX2 (ENSCWAG00000017982) #7	NGDN (ENSCWAG00000018042) #8	MYH7 (ENSCWAG00000018235) #9	CMTM5 (ENSCWAG00000019122) #11	IL25 (ENSCWAG00000019347)	EFS (ENSCWAG00000019377) #12	SLC22A17 (ENSCWAG00000019509) #13	PABPN1 (ENSCWAG00000019540) #14	BCL2L2 (ENSCWAG00000019597) #15	PPP1R3E (ENSCWAG00000019609)	HOMEZ (ENSCWAG00000019617) #16	RNF212B (ENSCWAG00000019641) #17	SLC7A8 (ENSCWAG00000019702) #18	CEBPE (ENSCWAG00000019947) #19	C14orf119 (ENSCWAG00000019963) #21	ACIN1 (ENSCWAG00000019983) #22	CDH24 (ENSCWAG00000020444) #23	PSMB11 (ENSCWAG00000020461) #24	ENSCWAG00000020473 #25	C14orf93 (ENSCWAG00000020482) #26	AJUBA (ENSCWAG00000020496) #27	HAUS4 (ENSCWAG00000020523) #28	PRMT5 (ENSCWAG00000020565) #29	RBM23 (ENSCWAG00000020740) #30	REM2 (ENSCWAG00000020754) #31	LRP10 (ENSCWAG00000020768) #32	MMP14 (ENSCWAG00000020783) #33	MRPL52 (ENSCWAG00000020797) #34	SLC7A7 (ENSCWAG00000020831) #35	OXA1L (ENSCWAG00000020858) #36	ENSCWAG00000020864 #37
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Cetacea	ANCESTRAL SPECIES	2	ENSGT00840000132219	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ob.a.b #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ob.a.b #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141.i #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ob.a.b #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141.i #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ob.a.b #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141.i #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Narwhal	MODERN SPECIES	308	AP1G2 (ENSMMNG00015012003)	THTPA (ENSMMNG00015011977)	ZFHX2 (ENSMMNG00015011962) #7	NGDN (ENSMMNG00015011916) #8	CMTM5 (ENSMMNG00015011844) #11	EFS (ENSMMNG00015011786) #12	SLC22A17 (ENSMMNG00015011756) #13	PABPN1 (ENSMMNG00015011735) #14	BCL2L2 (ENSMMNG00015011716) #15	PPP1R3E (ENSMMNG00015011706)	HOMEZ (ENSMMNG00015011693) #16	RNF212B (ENSMMNG00015011655) #17	SLC7A8 (ENSMMNG00015011590) #18	CEBPE (ENSMMNG00015011555) #19	C14orf119 (ENSMMNG00015011545) #21	ACIN1 (ENSMMNG00015011290) #22	CDH24 (ENSMMNG00015011166) #23	PSMB11 (ENSMMNG00015011153) #24	PSMB5 (ENSMMNG00015011131) #25	C14orf93 (ENSMMNG00015011104) #26	AJUBA (ENSMMNG00015011080) #27	HAUS4 (ENSMMNG00015011037) #28	ENSMMNG00015010912 #29	RBM23 (ENSMMNG00015010808) #30	REM2 (ENSMMNG00015010749) #31	LRP10 (ENSMMNG00015010719) #32	MMP14 (ENSMMNG00015010687) #33	MRPL52 (ENSMMNG00015010642) #34	SLC7A7 (ENSMMNG00015010613) #35	OXA1L (ENSMMNG00015010592) #36	ENSMMNG00015010566 #37
Beluga whale	MODERN SPECIES	44	THTPA (ENSDLEG00000019828)	ZFHX2 (ENSDLEG00000019833) #7	NGDN (ENSDLEG00000019837) #8	ENSDLEG00000019848 #9	ENSDLEG00000019856 #9	ENSDLEG00000019877 #9	EFS (ENSDLEG00000019882) #12	SLC22A17 (ENSDLEG00000019887) #13	PABPN1 (ENSDLEG00000019901) #14	BCL2L2 (ENSDLEG00000019924) #15	PPP1R3E (ENSDLEG00000019929)	HOMEZ (ENSDLEG00000019935) #16	SLC7A8 (ENSDLEG00000019937) #18	CEBPE (ENSDLEG00000019945) #19	CUNH14orf119 (ENSDLEG00000019946) #21	ACIN1 (ENSDLEG00000019949) #22	CDH24 (ENSDLEG00000019963) #23	PSMB11 (ENSDLEG00000019969) #24	PSMB5 (ENSDLEG00000019970) #25	CUNH14orf93 (ENSDLEG00000019974) #26	AJUBA (ENSDLEG00000019978) #27	HAUS4 (ENSDLEG00000019987) #28	PRMT5 (ENSDLEG00000019993) #29	RBM23 (ENSDLEG00000020009) #30	REM2 (ENSDLEG00000020022) #31	LRP10 (ENSDLEG00000020034) #32	MMP14 (ENSDLEG00000020044) #33	SLC7A7 (ENSDLEG00000020052) #35	ENSDLEG00000020066	OXA1L (ENSDLEG00000020068) #36	ENSDLEG00000020073 #37
Vaquita	MODERN SPECIES	11	ZFHX2 (ENSPSNG00000021454) #7	NGDN (ENSPSNG00000021421) #8	MYH7 (ENSPSNG00000021301) #9	MYH6 (ENSPSNG00000021172) #10	CMTM5 (ENSPSNG00000020960) #11	EFS (ENSPSNG00000020810) #12	SLC22A17 (ENSPSNG00000020737) #13	ENSPSNG00000020631 #14	BCL2L2 (ENSPSNG00000020606) #15	PPP1R3E (ENSPSNG00000020595)	HOMEZ (ENSPSNG00000020557) #16	RNF212B (ENSPSNG00000020470) #17	SLC7A8 (ENSPSNG00000020328) #18	CEBPE (ENSPSNG00000020268) #19	C14orf119 (ENSPSNG00000020249) #21	ACIN1 (ENSPSNG00000019734) #22	CDH24 (ENSPSNG00000019630) #23	PSMB11 (ENSPSNG00000019602) #24	PSMB5 (ENSPSNG00000019535) #25	C14orf93 (ENSPSNG00000019391) #26	AJUBA (ENSPSNG00000019351) #27	HAUS4 (ENSPSNG00000019326) #28	PRMT5 (ENSPSNG00000018887) #29	RBM23 (ENSPSNG00000018691) #30	REM2 (ENSPSNG00000018592) #31	LRP10 (ENSPSNG00000018527) #32	MMP14 (ENSPSNG00000018471) #33	MRPL52 (ENSPSNG00000018228) #34	SLC7A7 (ENSPSNG00000018124) #35	OXA1L (ENSPSNG00000018044) #36	ABHD4 (ENSPSNG00000017542)
Dolphin	MODERN SPECIES	1193															C14orf119 (ENSTTRG00000001509) #21	ACIN1 (ENSTTRG00000001508) #22	CDH24 (ENSTTRG00000001507) #23	PSMB11 (ENSTTRG00000001506) #24	PSMB5 (ENSTTRG00000001505) #25	C14orf93 (ENSTTRG00000001504) #26	AJUBA (ENSTTRG00000001503) #27	HAUS4 (ENSTTRG00000001502) #28	PRMT5 (ENSTTRG00000001501) #29	RBM23 (ENSTTRG00000001500) #30	REM2 (ENSTTRG00000001499) #31	LRP10 (ENSTTRG00000001498) #32	MMP14 (ENSTTRG00000001497) #33	MRPL52 (ENSTTRG00000001496) #34	SLC7A7 (ENSTTRG00000001495) #35	OXA1L (ENSTTRG00000001494) #36
Sperm whale	MODERN SPECIES	93													SLC7A8 (ENSPCTG00005018120) #18	CEBPE (ENSPCTG00005017930) #19	ENSPCTG00005017830 #21	ACIN1 (ENSPCTG00005015930) #22	CDH24 (ENSPCTG00005015341) #23	PSMB11 (ENSPCTG00005015139) #24	PSMB5 (ENSPCTG00005014774) #25
Blue whale	MODERN SPECIES	11	NGDN (ENSBMSG00010011306) #8	ENSBMSG00010011523	MYH7 (ENSBMSG00010011494) #9	MYH6 (ENSBMSG00010011441) #10	CMTM5 (ENSBMSG00010011381) #11	IL25 (ENSBMSG00010011278)	SLC22A17 (ENSBMSG00010011177) #13	PABPN1 (ENSBMSG00010011095) #14	BCL2L2 (ENSBMSG00010011083) #15	PPP1R3E (ENSBMSG00010011076)	HOMEZ (ENSBMSG00010011062) #16	RNF212B (ENSBMSG00010011032) #17	SLC7A8 (ENSBMSG00010010980) #18	CEBPE (ENSBMSG00010010945) #19	ENSBMSG00010010928	ACIN1 (ENSBMSG00010010863) #22	PSMB11 (ENSBMSG00010010746) #24	PSMB5 (ENSBMSG00010010731) #25	C14orf93 (ENSBMSG00010010696) #26	AJUBA (ENSBMSG00010010676) #27	HAUS4 (ENSBMSG00010010635) #28	PRMT5 (ENSBMSG00010010436) #29	RBM23 (ENSBMSG00010010357) #30	REM2 (ENSBMSG00010010327) #31	LRP10 (ENSBMSG00010010297) #32	MMP14 (ENSBMSG00010010266) #33	MRPL52 (ENSBMSG00010010235) #34	SLC7A7 (ENSBMSG00010010209) #35	OXA1L (ENSBMSG00010010184) #36	ENSBMSG00010010087	ABHD4 (ENSBMSG00010010078)
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.m #37
Yarkand deer	MODERN SPECIES	3	ZFHX2 (ENSCHYG00000012435) #7	NGDN (ENSCHYG00000012516) #8	MYH7 (ENSCHYG00000012682) #9	ENSCHYG00000013203	ENSCHYG00000013291 #11	IL25 (ENSCHYG00000013553)	EFS (ENSCHYG00000013648) #12	SLC22A17 (ENSCHYG00000013916) #13	PABPN1 (ENSCHYG00000014202) #14	PPP1R3E (ENSCHYG00000014529)	HOMEZ (ENSCHYG00000014595) #16	RNF212B (ENSCHYG00000014629) #17	SLC7A8 (ENSCHYG00000014686) #18	CEBPE (ENSCHYG00000014944) #19	ENSCHYG00000015000 #21	ACIN1 (ENSCHYG00000015090) #22	CDH24 (ENSCHYG00000016351) #23	PSMB11 (ENSCHYG00000016390) #24	ENSCHYG00000016436 #25	C14orf93 (ENSCHYG00000016592) #26	AJUBA (ENSCHYG00000016731) #27	HAUS4 (ENSCHYG00000016879) #28	PRMT5 (ENSCHYG00000017109) #29	RBM23 (ENSCHYG00000018246) #30	REM2 (ENSCHYG00000018358) #31	LRP10 (ENSCHYG00000018426) #32	MMP14 (ENSCHYG00000018620) #33	SLC7A7 (ENSCHYG00000018767) #35	ENSCHYG00000018959 #34	OXA1L (ENSCHYG00000019267) #36	ENSCHYG00000019500
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.m #37
Siberian musk deer	MODERN SPECIES	71	MYH7 (ENSMMSG00000001605) #9	ENSMMSG00000001644	MYH6 (ENSMMSG00000001674) #10	CMTM5 (ENSMMSG00000001757) #11	IL25 (ENSMMSG00000001835)	EFS (ENSMMSG00000001859) #12	SLC22A17 (ENSMMSG00000001967) #13	PABPN1 (ENSMMSG00000001996) #14	BCL2L2 (ENSMMSG00000002020) #15	PPP1R3E (ENSMMSG00000002025)	HOMEZ (ENSMMSG00000002035) #16	RNF212B (ENSMMSG00000002057) #17	ENSMMSG00000002086	SLC7A8 (ENSMMSG00000002101) #18	CEBPE (ENSMMSG00000002146) #19	ACIN1 (ENSMMSG00000002178) #22	CDH24 (ENSMMSG00000002274) #23	PSMB11 (ENSMMSG00000002294) #24	PSMB5 (ENSMMSG00000002310) #25	C14orf93 (ENSMMSG00000002348) #26	AJUBA (ENSMMSG00000002391) #27	HAUS4 (ENSMMSG00000002467) #28	PRMT5 (ENSMMSG00000002569) #29	RBM23 (ENSMMSG00000003104) #30	REM2 (ENSMMSG00000003202) #31	LRP10 (ENSMMSG00000003220) #32	MMP14 (ENSMMSG00000003242) #33	MRPL52 (ENSMMSG00000003274) #34	SLC7A7 (ENSMMSG00000003307) #35	OXA1L (ENSMMSG00000003331) #36	ENSMMSG00000003356 #37
Bovidae	ANCESTRAL SPECIES	7	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.m.b #37
Caprinae	ANCESTRAL SPECIES	30	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.m.b #37
Rambouillet Sheep	MODERN SPECIES	23	MYH6 (ENSOARG00020013441) #10	CMTM5 (ENSOARG00020013841) #11	IL25 (ENSOARG00020014170)	EFS (ENSOARG00020014378) #12	SLC22A17 (ENSOARG00020014657) #13	ENSOARG00020014719 #14	BCL2L2 (ENSOARG00020014884) #15	PPP1R3E (ENSOARG00020014915)	HOMEZ (ENSOARG00020014934) #16	RNF212B (ENSOARG00020014957) #17	ENSOARG00020015099	SLC7A8 (ENSOARG00020015163) #18	CEBPE (ENSOARG00020015485) #19	C14orf119 (ENSOARG00020015511) #21	ENSOARG00020015537	ACIN1 (ENSOARG00020015623) #22	CDH24 (ENSOARG00020016927) #23	PSMB11 (ENSOARG00020016991) #24	PSMB5 (ENSOARG00020017060) #25	C14orf93 (ENSOARG00020017179) #26	AJUBA (ENSOARG00020017465) #27	HAUS4 (ENSOARG00020017603) #28	PRMT5 (ENSOARG00020017830) #29	RBM23 (ENSOARG00020019058) #30	REM2 (ENSOARG00020019163) #31	LRP10 (ENSOARG00020019221) #32	MMP14 (ENSOARG00020009862) #33	MRPL52 (ENSOARG00020010106) #34	SLC7A7 (ENSOARG00020010417) #35	OXA1L (ENSOARG00020010686) #36	ENSOARG00020010800 #37
Goat	MODERN SPECIES	1	MYH7 (ENSCHIG00000021214) #9	ENSCHIG00000017054	MYH6 (ENSCHIG00000017127) #10	CMTM5 (ENSCHIG00000025543) #11	IL25 (ENSCHIG00000016925)	EFS (ENSCHIG00000025386) #12	SLC22A17 (ENSCHIG00000023170) #13	PABPN1 (ENSCHIG00000012184) #14	BCL2L2 (ENSCHIG00000012471) #15	PPP1R3E (ENSCHIG00000019965)	HOMEZ (ENSCHIG00000027265) #16	RNF212B (ENSCHIG00000019974) #17	SLC7A8 (ENSCHIG00000007220) #18	CEBPE (ENSCHIG00000024067) #19	C14orf119 (ENSCHIG00000003839) #21	ACIN1 (ENSCHIG00000017602) #22	CDH24 (ENSCHIG00000012466) #23	PSMB11 (ENSCHIG00000002806) #24	ENSCHIG00000024418	PSMB5 (ENSCHIG00000011511) #25	C14orf93 (ENSCHIG00000021325) #26	AJUBA (ENSCHIG00000025926) #27	HAUS4 (ENSCHIG00000019264) #28	PRMT5 (ENSCHIG00000016954) #29	REM2 (ENSCHIG00000012090) #31	LRP10 (ENSCHIG00000003799) #32	RBM23 (ENSCHIG00000025709) #30	MMP14 (ENSCHIG00000011010) #33	MRPL52 (ENSCHIG00000014047) #34	SLC7A7 (ENSCHIG00000022436) #35	OXA1L (ENSCHIG00000022345) #36
Bovinae	ANCESTRAL SPECIES	33	ENSGT00940000159432.C #9	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.lb.b #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.m.b.b #37
Bos	ANCESTRAL SPECIES	31	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.lb.b #14	ENSGT00940000154606.lb.a.a.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.m.b.b #37
Bos_a	ANCESTRAL SPECIES	40	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.lb.b #14	ENSGT00940000154606.lb.a.a.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.n #37
Domestic yak	MODERN SPECIES	2	MYH7 (ENSBGRG00000008351) #9	ENSBGRG00000008201	MYH6 (ENSBGRG00000007922) #10	CMTM5 (ENSBGRG00000007702) #11	IL25 (ENSBGRG00000007635)	EFS (ENSBGRG00000007431) #12	SLC22A17 (ENSBGRG00000007218) #13	ENSBGRG00000007033 #14	BCL2L2 (ENSBGRG00000006983) #15	PPP1R3E (ENSBGRG00000006964)	HOMEZ (ENSBGRG00000006869) #16	RNF212B (ENSBGRG00000006773) #17	SLC7A8 (ENSBGRG00000006627) #18	CEBPE (ENSBGRG00000006600) #19	ENSBGRG00000006584 #21	ACIN1 (ENSBGRG00000005584) #22	CDH24 (ENSBGRG00000005438) #23	PSMB11 (ENSBGRG00000005418) #24	PSMB5 (ENSBGRG00000005400) #25	C14orf93 (ENSBGRG00000005326) #26	AJUBA (ENSBGRG00000005204) #27	HAUS4 (ENSBGRG00000005108) #28	PRMT5 (ENSBGRG00000004439) #29	RBM23 (ENSBGRG00000004216) #30	REM2 (ENSBGRG00000004119) #31	LRP10 (ENSBGRG00000004081) #32	MMP14 (ENSBGRG00000004010) #33	MRPL52 (ENSBGRG00000003895) #34	SLC7A7 (ENSBGRG00000003777) #35	OXA1L (ENSBGRG00000003716) #36	ENSBGRG00000003690 #37
Wild yak	MODERN SPECIES	723											HOMEZ (ENSBMUG00000017581) #16	RNF212B (ENSBMUG00000017625) #17	SLC7A8 (ENSBMUG00000017781) #18	CEBPE (ENSBMUG00000017817) #19	ENSBMUG00000017829 #21	ACIN1 (ENSBMUG00000018068) #22	CDH24 (ENSBMUG00000018198) #23	PSMB11 (ENSBMUG00000018210) #24	PSMB5 (ENSBMUG00000018220) #25	C14orf93 (ENSBMUG00000018246) #26	AJUBA (ENSBMUG00000018267) #27	HAUS4 (ENSBMUG00000018324) #28	PRMT5 (ENSBMUG00000018509) #29	RBM23 (ENSBMUG00000018668) #30	REM2 (ENSBMUG00000018707) #31	LRP10 (ENSBMUG00000018763) #32	MMP14 (ENSBMUG00000018824) #33	MRPL52 (ENSBMUG00000018880) #34	SLC7A7 (ENSBMUG00000018917) #35	OXA1L (ENSBMUG00000018974) #36	ENSBMUG00000018990 #37
Bos_b	ANCESTRAL SPECIES	28	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.lb.b #14	ENSGT00940000154606.lb.a.a.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.m.b.b #37
Hybrid Bos Indicus	MODERN SPECIES	1	THTPA (ENSBIXG00005026588)	ZFHX2 (ENSBIXG00005004534) #7	NGDN (ENSBIXG00005026509) #8	MYH6 (ENSBIXG00005004514) #10	CMTM5 (ENSBIXG00005026081) #11	IL25 (ENSBIXG00005025971)	EFS (ENSBIXG00005025931) #12	SLC22A17 (ENSBIXG00005007632) #13	ENSBIXG00005025736 #14	PPP1R3E (ENSBIXG00005004374)	RNF212B (ENSBIXG00005025645) #17	HOMEZ (ENSBIXG00005025580) #16	SLC7A8 (ENSBIXG00005025555) #18	CEBPE (ENSBIXG00005025442) #19	ENSBIXG00005025429 #21	ACIN1 (ENSBIXG00005025385) #22	PSMB11 (ENSBIXG00005025093) #24	CDH24 (ENSBIXG00005025077) #23	PSMB5 (ENSBIXG00005025051) #25	C14orf93 (ENSBIXG00005025024) #26	AJUBA (ENSBIXG00005024958) #27	HAUS4 (ENSBIXG00005024881) #28	PRMT5 (ENSBIXG00005024744) #29	RBM23 (ENSBIXG00005024618) #30	REM2 (ENSBIXG00005024566) #31	LRP10 (ENSBIXG00005024520) #32	MMP14 (ENSBIXG00005024467) #33	MRPL52 (ENSBIXG00005024443) #34	SLC7A7 (ENSBIXG00005024321) #35	ENSBIXG00005006520	OXA1L (ENSBIXG00005024237) #36
Cow	MODERN SPECIES	1	MYH7 (ENSBTAG00000009703) #9	ENSBTAG00000049196	MYH6 (ENSBTAG00000040053) #10	CMTM5 (ENSBTAG00000032709) #11	IL25 (ENSBTAG00000009701)	EFS (ENSBTAG00000038733) #12	SLC22A17 (ENSBTAG00000016467) #13	PABPN1 (ENSBTAG00000006884) #14	BCL2L2 (ENSBTAG00000019692) #15	PPP1R3E (ENSBTAG00000037679)	HOMEZ (ENSBTAG00000032686) #16	RNF212B (ENSBTAG00000025755) #17	SLC7A8 (ENSBTAG00000007415) #18	CEBPE (ENSBTAG00000005952) #19	C10H14orf119 (ENSBTAG00000047027) #21	ACIN1 (ENSBTAG00000011571) #22	CDH24 (ENSBTAG00000011349) #23	PSMB11 (ENSBTAG00000054080) #24	PSMB5 (ENSBTAG00000012726) #25	C10H14orf93 (ENSBTAG00000012725) #26	AJUBA (ENSBTAG00000012724) #27	HAUS4 (ENSBTAG00000012723) #28	PRMT5 (ENSBTAG00000010890) #29	RBM23 (ENSBTAG00000038333) #30	REM2 (ENSBTAG00000016381) #31	LRP10 (ENSBTAG00000016378) #32	MMP14 (ENSBTAG00000014824) #33	MRPL52 (ENSBTAG00000014822) #34	SLC7A7 (ENSBTAG00000014821) #35	OXA1L (ENSBTAG00000014820) #36	OR6E1D (ENSBTAG00000052080) #37
American bison	MODERN SPECIES	3371	MYH7 (ENSBBBG00000022671) #9	MYH6 (ENSBBBG00000022754) #10	CMTM5 (ENSBBBG00000022811) #11	IL25 (ENSBBBG00000022824)	EFS (ENSBBBG00000022874) #12	SLC22A17 (ENSBBBG00000022896) #13	ENSBBBG00000022911 #14	ENSBBBG00000008847	BCL2L2 (ENSBBBG00000022924) #15	PPP1R3E (ENSBBBG00000022929)	HOMEZ (ENSBBBG00000022940) #16	RNF212B (ENSBBBG00000006030) #17	SLC7A8 (ENSBBBG00000006044) #18	CEBPE (ENSBBBG00000023047) #19	C14orf119 (ENSBBBG00000023052) #21	ACIN1 (ENSBBBG00000023242) #22	CDH24 (ENSBBBG00000023286) #23	PSMB11 (ENSBBBG00000023294) #24	ENSBBBG00000006094 #25	C14orf93 (ENSBBBG00000023354) #26	AJUBA (ENSBBBG00000023373) #27	HAUS4 (ENSBBBG00000023502) #28	PRMT5 (ENSBBBG00000023731) #29	RBM23 (ENSBBBG00000006214) #30	REM2 (ENSBBBG00000008315) #31	LRP10 (ENSBBBG00000000301) #32	MMP14 (ENSBBBG00000023905) #33	MRPL52 (ENSBBBG00000023959) #34	SLC7A7 (ENSBBBG00000024018) #35	OXA1L (ENSBBBG00000024118) #36	ENSBBBG00000024134 #37
Camelidae	DUPLICATION
Camelidae	ANCESTRAL SPECIES																	ENSGT00710000106790.m #22
Arabian camel	MODERN SPECIES	32	NGDN (ENSCDRG00005014296) #8	MYH7 (ENSCDRG00005011592) #9	ENSCDRG00005011468 #9	ENSCDRG00005010979 #11	IL25 (ENSCDRG00005010895)	EFS (ENSCDRG00005010619) #12	SLC22A17 (ENSCDRG00005010481) #13	PABPN1 (ENSCDRG00005010409) #14	PPP1R3E (ENSCDRG00005010373)	HOMEZ (ENSCDRG00005010338) #16	RNF212B (ENSCDRG00005010263) #17	SLC7A8 (ENSCDRG00005010040) #18	CEBPE (ENSCDRG00005009995) #19	ENSCDRG00005009981 #21	ENSCDRG00005009937	ENSCDRG00005009904 #22	ENSCDRG00005009880	ENSCDRG00005009853	ENSCDRG00005009829 #21	ENSCDRG00005009770	ACIN1 (ENSCDRG00005008746) #22	CDH24 (ENSCDRG00005008657) #23	PSMB11 (ENSCDRG00005008630) #24	PSMB5 (ENSCDRG00005008563) #25	C14orf93 (ENSCDRG00005008496) #26	AJUBA (ENSCDRG00005008424) #27	HAUS4 (ENSCDRG00005008205) #28	PRMT5 (ENSCDRG00005007871) #29	ENSCDRG00005007748 #30	REM2 (ENSCDRG00005007658) #31	LRP10 (ENSCDRG00005007477) #32
Camelidae	ANCESTRAL SPECIES	41	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00910000145938	ENSGT00710000106790.n #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Arabian camel	MODERN SPECIES	32	EFS (ENSCDRG00005010619) #12	SLC22A17 (ENSCDRG00005010481) #13	PABPN1 (ENSCDRG00005010409) #14	PPP1R3E (ENSCDRG00005010373)	HOMEZ (ENSCDRG00005010338) #16	RNF212B (ENSCDRG00005010263) #17	SLC7A8 (ENSCDRG00005010040) #18	CEBPE (ENSCDRG00005009995) #19	ENSCDRG00005009981 #21	ENSCDRG00005009937	ENSCDRG00005009904 #22	ENSCDRG00005009880	ENSCDRG00005009853	ENSCDRG00005009829 #21	ENSCDRG00005009770	ACIN1 (ENSCDRG00005008746) #22	CDH24 (ENSCDRG00005008657) #23	PSMB11 (ENSCDRG00005008630) #24	PSMB5 (ENSCDRG00005008563) #25	C14orf93 (ENSCDRG00005008496) #26	AJUBA (ENSCDRG00005008424) #27	HAUS4 (ENSCDRG00005008205) #28	PRMT5 (ENSCDRG00005007871) #29	ENSCDRG00005007748 #30	REM2 (ENSCDRG00005007658) #31	LRP10 (ENSCDRG00005007477) #32	MRPL52 (ENSCDRG00005007435) #34	MMP14 (ENSCDRG00005007391) #33	ENSCDRG00005007346 #34	SLC7A7 (ENSCDRG00005007288) #35	OXA1L (ENSCDRG00005007183) #36
Alpaca	MODERN SPECIES	3203													RNF212B (ENSVPAG00000000614) #17	SLC7A8 (ENSVPAG00000000612) #18	C14orf119 (ENSVPAG00000000611) #21	ACIN1 (ENSVPAG00000000604) #22	PRMT5 (ENSVPAG00000000600) #29	ENSVPAG00000000599 #30
Eulipotyphla	ANCESTRAL SPECIES	336														ENSGT00940000158278 #18	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23
Hedgehog	MODERN SPECIES	3755															C14orf119 (ENSEEUG00000009942) #21	ACIN1 (ENSEEUG00000009641) #22	CDH24 (ENSEEUG00000009618) #23
Common shrew	MODERN SPECIES	5717																ACIN1 (ENSSARG00000011072) #22	C14orf93 (ENSSARG00000011065) #26	AJUBA (ENSSARG00000011049) #27	HAUS4 (ENSSARG00000011027) #28	PRMT5 (ENSSARG00000010999) #29
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Glires	ANCESTRAL SPECIES	12	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Rodentia	ANCESTRAL SPECIES	3	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	403	Jph4 (ENSDORG00000008889)	Ap1g2 (ENSDORG00000008885)	Zfhx2 (ENSDORG00000010743) #7	Ngdn (ENSDORG00000010731) #8	Myh7 (ENSDORG00000013243) #9	Myh6 (ENSDORG00000013241) #10	Cmtm5 (ENSDORG00000013239) #11	Slc22a17 (ENSDORG00000002875) #13	ENSDORG00000028966 #14	Bcl2l2 (ENSDORG00000029170) #15	Ppp1r3e (ENSDORG00000002870)	Slc7a8 (ENSDORG00000005581) #18	Cebpe (ENSDORG00000030127) #19	ENSDORG00000024228 #21	ENSDORG00000026150 #22	ENSDORG00000010574 #22	Cdh24 (ENSDORG00000010568) #23	Psmb11 (ENSDORG00000010567) #24	Psmb5 (ENSDORG00000024250) #25	ENSDORG00000010563 #25	4931414P19Rik (ENSDORG00000004064) #26	ENSDORG00000023447 #27	Prmt5 (ENSDORG00000004929) #29	ENSDORG00000004926 #30	Rem2 (ENSDORG00000004924) #31	Lrp10 (ENSDORG00000004922) #32	Mmp14 (ENSDORG00000000144) #33	Slc7a7 (ENSDORG00000011331) #35	Or6e1 (ENSDORG00000028076) #37	Abhd4 (ENSDORG00000008204)	Dad1 (ENSDORG00000008173)
Kangaroo rat	MODERN SPECIES	403	ENSDORG00000025344	Jph4 (ENSDORG00000008889)	Ap1g2 (ENSDORG00000008885)	Zfhx2 (ENSDORG00000010743) #7	Ngdn (ENSDORG00000010731) #8	Myh7 (ENSDORG00000013243) #9	Myh6 (ENSDORG00000013241) #10	Cmtm5 (ENSDORG00000013239) #11	Slc22a17 (ENSDORG00000002875) #13	ENSDORG00000028966 #14	Bcl2l2 (ENSDORG00000029170) #15	Ppp1r3e (ENSDORG00000002870)	Slc7a8 (ENSDORG00000005581) #18	Cebpe (ENSDORG00000030127) #19	ENSDORG00000024228 #21	ENSDORG00000026150 #22	ENSDORG00000010574 #22	Cdh24 (ENSDORG00000010568) #23	Psmb11 (ENSDORG00000010567) #24	Psmb5 (ENSDORG00000024250) #25	ENSDORG00000010563 #25	4931414P19Rik (ENSDORG00000004064) #26	ENSDORG00000023447 #27	Prmt5 (ENSDORG00000004929) #29	ENSDORG00000004926 #30	Rem2 (ENSDORG00000004924) #31	Lrp10 (ENSDORG00000004922) #32	Mmp14 (ENSDORG00000000144) #33	Slc7a7 (ENSDORG00000011331) #35	Or6e1 (ENSDORG00000028076) #37	Abhd4 (ENSDORG00000008204)
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b	ENSGT00390000003324
Muroidea	ANCESTRAL SPECIES	36	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b	ENSGT00390000003324
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37	ENSGT00390000016277.b
Chinese hamster chok1gshd	MODERN SPECIES	3	ENSCGRG00001000245	Myh7 (ENSCGRG00001011739) #9	ENSCGRG00001009796	Myh6 (ENSCGRG00001015978) #10	Cmtm5 (ENSCGRG00001003452) #11	Il25 (ENSCGRG00001022435)	Efs (ENSCGRG00001013569) #12	Slc22a17 (ENSCGRG00001012635) #13	Bcl2l2 (ENSCGRG00001022562) #15	Pabpn1 (ENSCGRG00001019696) #14	Ppp1r3e (ENSCGRG00001024530)	Homez (ENSCGRG00001016326) #16	Slc7a8 (ENSCGRG00001010833) #18	Cebpe (ENSCGRG00001017216) #19	1700123O20Rik (ENSCGRG00001008601) #21	Acin1 (ENSCGRG00001010945) #22	Cdh24 (ENSCGRG00001006509) #23	Psmb11 (ENSCGRG00001002129) #24	Psmb5 (ENSCGRG00001016436) #25	4931414P19Rik (ENSCGRG00001001465) #26	Ajuba (ENSCGRG00001014156) #27	ENSCGRG00001005166	Haus4 (ENSCGRG00001024703) #28	Prmt5 (ENSCGRG00001014293) #29	Rem2 (ENSCGRG00001003504) #31	Lrp10 (ENSCGRG00001009012) #32	Mmp14 (ENSCGRG00001015766) #33	Mrpl52 (ENSCGRG00001009095) #34	Slc7a7 (ENSCGRG00001021388) #35	Oxa1l (ENSCGRG00001023578) #36	Or6e1 (ENSCGRG00001005325) #37
Golden Hamster	MODERN SPECIES	811	ENSMAUG00000004020	Ap1g2 (ENSMAUG00000009342)	Zfhx2 (ENSMAUG00000020668) #7	Thtpa (ENSMAUG00000021239)	Ngdn (ENSMAUG00000011909) #8	Myh7 (ENSMAUG00000011363) #9	Myh6 (ENSMAUG00000010999) #10	Cmtm5 (ENSMAUG00000020256) #11	Il25 (ENSMAUG00000016858)	Efs (ENSMAUG00000009729) #12	Slc22a17 (ENSMAUG00000012724) #13	ENSMAUG00000007383 #14	Ppp1r3e (ENSMAUG00000012375)	Homez (ENSMAUG00000001159) #16	Slc7a8 (ENSMAUG00000019384) #18	Acin1 (ENSMAUG00000000504) #22	ENSMAUG00000012369	Cdh24 (ENSMAUG00000021615) #23	Psmb11 (ENSMAUG00000017123) #24	ENSMAUG00000014813	ENSMAUG00000017591 #25	4931414P19Rik (ENSMAUG00000013152) #26	Ajuba (ENSMAUG00000014919) #27	Rem2 (ENSMAUG00000021314) #31	Lrp10 (ENSMAUG00000013461) #32	Mmp14 (ENSMAUG00000018577) #33	Mrpl52 (ENSMAUG00000000585) #34	Slc7a7 (ENSMAUG00000005323) #35	Oxa1l (ENSMAUG00000005100) #36	Dad1 (ENSMAUG00000001827)
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	163	Thtpa (ENSMOCG00000000100)	Zfhx2 (ENSMOCG00000017802) #7	Ngdn (ENSMOCG00000021605) #8	Myh7 (ENSMOCG00000014763) #9	Myh6 (ENSMOCG00000013782) #10	Cmtm5 (ENSMOCG00000001040) #11	Il25 (ENSMOCG00000006767)	Efs (ENSMOCG00000002012) #12	Slc22a17 (ENSMOCG00000021722) #13	ENSMOCG00000018557 #14	Ppp1r3e (ENSMOCG00000018607)	Homez (ENSMOCG00000012834) #16	Slc7a8 (ENSMOCG00000017595) #18	Cebpe (ENSMOCG00000007425) #19	1700123O20Rik (ENSMOCG00000001450) #21	ENSMOCG00000016935 #22	ENSMOCG00000001801	ENSMOCG00000006934 #22	ENSMOCG00000007461	Cdh24 (ENSMOCG00000012608) #23	ENSMOCG00000015141 #25	4931414P19Rik (ENSMOCG00000012978) #26	Ajuba (ENSMOCG00000014127) #27	Haus4 (ENSMOCG00000005352) #28	Prmt5 (ENSMOCG00000017320) #29	Rem2 (ENSMOCG00000000581) #31	Lrp10 (ENSMOCG00000006687) #32	Mmp14 (ENSMOCG00000006065) #33	ENSMOCG00000016920 #34	Slc7a7 (ENSMOCG00000000960) #35	Oxa1l (ENSMOCG00000013102) #36
Prairie vole	MODERN SPECIES	163	Ngdn (ENSMOCG00000021605) #8	Myh7 (ENSMOCG00000014763) #9	Myh6 (ENSMOCG00000013782) #10	Cmtm5 (ENSMOCG00000001040) #11	Il25 (ENSMOCG00000006767)	Efs (ENSMOCG00000002012) #12	Slc22a17 (ENSMOCG00000021722) #13	ENSMOCG00000018557 #14	Ppp1r3e (ENSMOCG00000018607)	Homez (ENSMOCG00000012834) #16	Slc7a8 (ENSMOCG00000017595) #18	Cebpe (ENSMOCG00000007425) #19	1700123O20Rik (ENSMOCG00000001450) #21	ENSMOCG00000016935 #22	ENSMOCG00000001801	ENSMOCG00000006934 #22	ENSMOCG00000007461	Cdh24 (ENSMOCG00000012608) #23	ENSMOCG00000015141 #25	4931414P19Rik (ENSMOCG00000012978) #26	Ajuba (ENSMOCG00000014127) #27	Haus4 (ENSMOCG00000005352) #28	Prmt5 (ENSMOCG00000017320) #29	Rem2 (ENSMOCG00000000581) #31	Lrp10 (ENSMOCG00000006687) #32	Mmp14 (ENSMOCG00000006065) #33	ENSMOCG00000016920 #34	Slc7a7 (ENSMOCG00000000960) #35	Oxa1l (ENSMOCG00000013102) #36	ENSMOCG00000005060	Or6e1 (ENSMOCG00000003935) #37
Northern American deer mouse	MODERN SPECIES	22	ENSPEMG00000029925	ENSPEMG00000025680 #9	Cmtm5 (ENSPEMG00000016770) #11	Il25 (ENSPEMG00000026524)	Efs (ENSPEMG00000017684) #12	Slc22a17 (ENSPEMG00000015619) #13	Pabpn1 (ENSPEMG00000008332) #14	Bcl2l2 (ENSPEMG00000028029) #15	Ppp1r3e (ENSPEMG00000024938)	Homez (ENSPEMG00000017807) #16	Rnf212b (ENSPEMG00000027814) #17	Slc7a8 (ENSPEMG00000002906) #18	Cebpe (ENSPEMG00000006520) #19	Cirop (ENSPEMG00000027507) #20	1700123O20Rik (ENSPEMG00000026510) #21	Acin1 (ENSPEMG00000000765) #22	ENSPEMG00000014528	Cdh24 (ENSPEMG00000018892) #23	Psmb11 (ENSPEMG00000026627) #24	Psmb5 (ENSPEMG00000019276) #25	4931414P19Rik (ENSPEMG00000015496) #26	Ajuba (ENSPEMG00000019210) #27	Haus4 (ENSPEMG00000016122) #28	Prmt5 (ENSPEMG00000017614) #29	Rem2 (ENSPEMG00000011668) #31	Lrp10 (ENSPEMG00000013768) #32	Mmp14 (ENSPEMG00000014840) #33	Mrpl52 (ENSPEMG00000010147) #34	Slc7a7 (ENSPEMG00000016955) #35	Oxa1l (ENSPEMG00000016711) #36	Or6e1 (ENSPEMG00000004435) #37
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000154606.rb #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Mus	ANCESTRAL SPECIES	8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000154606.rb #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00860000136194	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000154606.rb #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00860000136194	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000154606.rb #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Mouse	MODERN SPECIES	5	Myh6 (ENSMUSG00000040752) #10	Cmtm5 (ENSMUSG00000040759) #11	Il25 (ENSMUSG00000040770)	Efs (ENSMUSG00000022203) #12	Slc22a17 (ENSMUSG00000022199) #13	Pabpn1 (ENSMUSG00000022194) #14	Gm20521 (ENSMUSG00000092232)	Bcl2l2 (ENSMUSG00000089682) #15	Ppp1r3e (ENSMUSG00000072494)	Homez (ENSMUSG00000057156) #16	Rnf212b (ENSMUSG00000112858) #17	Slc7a8 (ENSMUSG00000022180) #18	Cebpe (ENSMUSG00000052435) #19	Cirop (ENSMUSG00000114865) #20	1700123O20Rik (ENSMUSG00000040822) #21	Acin1 (ENSMUSG00000022185) #22	Cdh24 (ENSMUSG00000059674) #23	Psmb11 (ENSMUSG00000072423) #24	Psmb5 (ENSMUSG00000022193) #25	4931414P19Rik (ENSMUSG00000022179) #26	Ajuba (ENSMUSG00000022178) #27	Haus4 (ENSMUSG00000022177) #28	Prmt5 (ENSMUSG00000023110) #29	Rem2 (ENSMUSG00000022176) #31	Lrp10 (ENSMUSG00000022175) #32	Mmp14 (ENSMUSG00000000957) #33	Mrpl52 (ENSMUSG00000010406) #34	Slc7a7 (ENSMUSG00000000958) #35	Oxa1l (ENSMUSG00000000959) #36	Or6e1 (ENSMUSG00000048153) #37	Abhd4 (ENSMUSG00000040997)
Mus_C	ANCESTRAL SPECIES	20	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.sb #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000154606.rb #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00950000183634	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Steppe mouse	MODERN SPECIES	2984	ENSMSIG00000017472 #9	ENSMSIG00000017405 #9	ENSMSIG00000017391	Cmtm5 (ENSMSIG00000017353) #11	Il25 (ENSMSIG00000017337)	Efs (ENSMSIG00000017282) #12	Slc22a17 (ENSMSIG00000017154) #13	Pabpn1 (ENSMSIG00000017042) #14	Bcl2l2 (ENSMSIG00000017004) #15	Homez (ENSMSIG00000016993) #16	Rnf212b (ENSMSIG00000016945) #17	Slc7a8 (ENSMSIG00000016920) #18	Cebpe (ENSMSIG00000016907) #19	Cirop (ENSMSIG00000016852) #20	ENSMSIG00000016836 #21	Acin1 (ENSMSIG00000016452) #22	ENSMSIG00000016433	Cdh24 (ENSMSIG00000016419) #23	Psmb11 (ENSMSIG00000016415) #24	Psmb5 (ENSMSIG00000016401) #25	4931414P19Rik (ENSMSIG00000016385) #26	Ajuba (ENSMSIG00000016353) #27	Haus4 (ENSMSIG00000016328) #28	Prmt5 (ENSMSIG00000016312) #29	Rem2 (ENSMSIG00000016298) #31	Lrp10 (ENSMSIG00000016275) #32	Mmp14 (ENSMSIG00000016218) #33	ENSMSIG00000016189 #34	Slc7a7 (ENSMSIG00000016170) #35	Oxa1l (ENSMSIG00000016147) #36	Or6e1 (ENSMSIG00000016138) #37
spretus	MODERN SPECIES	5	Myh7 (MGP_SPRETEiJ_G0020172) #9	Myh6 (MGP_SPRETEiJ_G0020171) #10	Cmtm5 (MGP_SPRETEiJ_G0020170) #11	Il25 (MGP_SPRETEiJ_G0020169)	Efs (MGP_SPRETEiJ_G0020168) #12	Slc22a17 (MGP_SPRETEiJ_G0020167) #13	Pabpn1 (MGP_SPRETEiJ_G0020166) #14	MGP_SPRETEiJ_G0020165 #14	Bcl2l2 (MGP_SPRETEiJ_G0020164) #15	Ppp1r3e (MGP_SPRETEiJ_G0020163)	Homez (MGP_SPRETEiJ_G0020162) #16	MGP_SPRETEiJ_G0020161 #17	Slc7a8 (MGP_SPRETEiJ_G0020160) #18	Cebpe (MGP_SPRETEiJ_G0020159) #19	1700123O20Rik (MGP_SPRETEiJ_G0020158) #21	Acin1 (MGP_SPRETEiJ_G0020157) #22	MGP_SPRETEiJ_G0020156	MGP_SPRETEiJ_G0020155	Cdh24 (MGP_SPRETEiJ_G0020154) #23	Psmb11 (MGP_SPRETEiJ_G0020153) #24	Psmb5 (MGP_SPRETEiJ_G0020152) #25	4931414P19Rik (MGP_SPRETEiJ_G0020151) #26	Ajuba (MGP_SPRETEiJ_G0020150) #27	Haus4 (MGP_SPRETEiJ_G0020149) #28	Prmt5 (MGP_SPRETEiJ_G0020148) #29	Rem2 (MGP_SPRETEiJ_G0020147) #31	Lrp10 (MGP_SPRETEiJ_G0020146) #32	Mmp14 (MGP_SPRETEiJ_G0020145) #33	Mrpl52 (MGP_SPRETEiJ_G0020144) #34	Slc7a7 (MGP_SPRETEiJ_G0020143) #35	Oxa1l (MGP_SPRETEiJ_G0020142) #36
Ryukyu mouse	MODERN SPECIES	5	Myh6 (MGP_CAROLIEiJ_G0019282) #10	Cmtm5 (MGP_CAROLIEiJ_G0019281) #11	Il25 (MGP_CAROLIEiJ_G0019280)	Efs (MGP_CAROLIEiJ_G0019279) #12	Slc22a17 (MGP_CAROLIEiJ_G0019278) #13	Pabpn1 (MGP_CAROLIEiJ_G0019277) #14	MGP_CAROLIEiJ_G0019276 #14	Bcl2l2 (MGP_CAROLIEiJ_G0019275) #15	Ppp1r3e (MGP_CAROLIEiJ_G0019274)	Homez (MGP_CAROLIEiJ_G0019273) #16	MGP_CAROLIEiJ_G0019272 #17	MGP_CAROLIEiJ_G0019271	Slc7a8 (MGP_CAROLIEiJ_G0019270) #18	Cebpe (MGP_CAROLIEiJ_G0019269) #19	1700123O20Rik (MGP_CAROLIEiJ_G0019268) #21	Acin1 (MGP_CAROLIEiJ_G0019267) #22	MGP_CAROLIEiJ_G0019266	MGP_CAROLIEiJ_G0019265	Cdh24 (MGP_CAROLIEiJ_G0019264) #23	Psmb11 (MGP_CAROLIEiJ_G0019263) #24	Psmb5 (MGP_CAROLIEiJ_G0019262) #25	4931414P19Rik (MGP_CAROLIEiJ_G0019261) #26	Ajuba (MGP_CAROLIEiJ_G0019260) #27	Haus4 (MGP_CAROLIEiJ_G0019259) #28	Prmt5 (MGP_CAROLIEiJ_G0019258) #29	Rem2 (MGP_CAROLIEiJ_G0019257) #31	Lrp10 (MGP_CAROLIEiJ_G0019256) #32	Mmp14 (MGP_CAROLIEiJ_G0019255) #33	Mrpl52 (MGP_CAROLIEiJ_G0019254) #34	Slc7a7 (MGP_CAROLIEiJ_G0019253) #35	Oxa1l (MGP_CAROLIEiJ_G0019252) #36
Shrew mouse	MODERN SPECIES	21	Myh7 (MGP_PahariEiJ_G0030301) #9	Myh6 (MGP_PahariEiJ_G0030300) #10	Cmtm5 (MGP_PahariEiJ_G0030299) #11	Il25 (MGP_PahariEiJ_G0030298)	Efs (MGP_PahariEiJ_G0030297) #12	MGP_PahariEiJ_G0030296 #13	Pabpn1 (MGP_PahariEiJ_G0030295) #14	MGP_PahariEiJ_G0030294 #14	Bcl2l2 (MGP_PahariEiJ_G0030293) #15	Ppp1r3e (MGP_PahariEiJ_G0030292)	Homez (MGP_PahariEiJ_G0030291) #16	MGP_PahariEiJ_G0030290 #17	Slc7a8 (MGP_PahariEiJ_G0030289) #18	Cebpe (MGP_PahariEiJ_G0030288) #19	1700123O20Rik (MGP_PahariEiJ_G0030287) #21	Acin1 (MGP_PahariEiJ_G0030286) #22	MGP_PahariEiJ_G0030285	MGP_PahariEiJ_G0030284	Cdh24 (MGP_PahariEiJ_G0030283) #23	Psmb11 (MGP_PahariEiJ_G0030282) #24	Psmb5 (MGP_PahariEiJ_G0030281) #25	4931414P19Rik (MGP_PahariEiJ_G0030280) #26	Ajuba (MGP_PahariEiJ_G0030279) #27	Haus4 (MGP_PahariEiJ_G0030278) #28	Prmt5 (MGP_PahariEiJ_G0030277) #29	Rem2 (MGP_PahariEiJ_G0030276) #31	Lrp10 (MGP_PahariEiJ_G0030275) #32	Mmp14 (MGP_PahariEiJ_G0030274) #33	Mrpl52 (MGP_PahariEiJ_G0030273) #34	MGP_PahariEiJ_G0030272 #35	Oxa1l (MGP_PahariEiJ_G0030271) #36
Rat	MODERN SPECIES	6	Myh6 (ENSRNOG00000025757) #10	Cmtm5 (ENSRNOG00000016828) #11	Il25 (ENSRNOG00000016804)	Efs (ENSRNOG00000042029) #12	Slc22a17 (ENSRNOG00000016414) #13	Pabpn1 (ENSRNOG00000042195) #14	Bcl2l2 (ENSRNOG00000015732) #15	Ppp1r3e (ENSRNOG00000014904)	Homez (ENSRNOG00000014887) #16	ENSRNOG00000069519	Rnf212b (ENSRNOG00000066673) #17	Slc7a8 (ENSRNOG00000014311) #18	Cebpe (ENSRNOG00000014282) #19	Cirop (ENSRNOG00000057827) #20	C15h14orf119 (ENSRNOG00000029146) #21	Acin1 (ENSRNOG00000013533) #22	Gm17606 (ENSRNOG00000065567)	Cdh24 (ENSRNOG00000013503) #23	Psmb5 (ENSRNOG00000013386) #25	RGD1565222 (ENSRNOG00000013317) #26	Ajuba (ENSRNOG00000012791) #27	Haus4 (ENSRNOG00000039284) #28	Prmt5 (ENSRNOG00000012046) #29	Rem2 (ENSRNOG00000011646) #31	Lrp10 (ENSRNOG00000011592) #32	Mmp14 (ENSRNOG00000010947) #33	Slc7a7 (ENSRNOG00000010296) #35	Oxa1l (ENSRNOG00000009713) #36	Or6e1 (ENSRNOG00000068252) #37	Abhd4 (ENSRNOG00000009244)	Dad1 (ENSRNOG00000009090)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1079	Ngdn (ENSNGAG00000003165) #8	Myh7 (ENSNGAG00000013085) #9	ENSNGAG00000018818	Myh6 (ENSNGAG00000007516) #10	Cmtm5 (ENSNGAG00000012704) #11	Il25 (ENSNGAG00000013734)	Efs (ENSNGAG00000019359) #12	Slc22a17 (ENSNGAG00000011537) #13	Pabpn1 (ENSNGAG00000019529) #14	Ppp1r3e (ENSNGAG00000004940)	Homez (ENSNGAG00000008554) #16	Slc7a8 (ENSNGAG00000003049) #18	Cebpe (ENSNGAG00000010501) #19	1700123O20Rik (ENSNGAG00000010897) #21	ENSNGAG00000014938 #22	ENSNGAG00000020569 #22	Cdh24 (ENSNGAG00000010716) #23	Psmb5 (ENSNGAG00000014706) #25	ENSNGAG00000017377	4931414P19Rik (ENSNGAG00000018515) #26	ENSNGAG00000020767 #27	Haus4 (ENSNGAG00000001010) #28	Prmt5 (ENSNGAG00000004212) #29	Rem2 (ENSNGAG00000010180) #31	Lrp10 (ENSNGAG00000001455) #32	Mmp14 (ENSNGAG00000011134) #33	Mrpl52 (ENSNGAG00000011028) #34	Slc7a7 (ENSNGAG00000014120) #35	Oxa1l (ENSNGAG00000015527) #36	Abhd4 (ENSNGAG00000019786)	Dad1 (ENSNGAG00000002448)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1079	Zfhx2 (ENSNGAG00000004250) #7	Ngdn (ENSNGAG00000003165) #8	Myh7 (ENSNGAG00000013085) #9	ENSNGAG00000018818	Myh6 (ENSNGAG00000007516) #10	Cmtm5 (ENSNGAG00000012704) #11	Il25 (ENSNGAG00000013734)	Efs (ENSNGAG00000019359) #12	Slc22a17 (ENSNGAG00000011537) #13	Pabpn1 (ENSNGAG00000019529) #14	Ppp1r3e (ENSNGAG00000004940)	Homez (ENSNGAG00000008554) #16	Slc7a8 (ENSNGAG00000003049) #18	Cebpe (ENSNGAG00000010501) #19	1700123O20Rik (ENSNGAG00000010897) #21	ENSNGAG00000014938 #22	ENSNGAG00000020569 #22	Cdh24 (ENSNGAG00000010716) #23	Psmb5 (ENSNGAG00000014706) #25	ENSNGAG00000017377	4931414P19Rik (ENSNGAG00000018515) #26	ENSNGAG00000020767 #27	Haus4 (ENSNGAG00000001010) #28	Prmt5 (ENSNGAG00000004212) #29	Rem2 (ENSNGAG00000010180) #31	Lrp10 (ENSNGAG00000001455) #32	Mmp14 (ENSNGAG00000011134) #33	Mrpl52 (ENSNGAG00000011028) #34	Slc7a7 (ENSNGAG00000014120) #35	Oxa1l (ENSNGAG00000015527) #36	Abhd4 (ENSNGAG00000019786)
Lesser Egyptian jerboa	MODERN SPECIES	86	ENSJJAG00000001781	ENSJJAG00000001611	ENSJJAG00000018055	Jph4 (ENSJJAG00000015800)	Ap1g2 (ENSJJAG00000024364)	Thtpa (ENSJJAG00000023450)	Myh7 (ENSJJAG00000017404) #9	Cmtm5 (ENSJJAG00000015340) #11	Slc22a17 (ENSJJAG00000010734) #13	Pabpn1 (ENSJJAG00000023507) #14	Bcl2l2 (ENSJJAG00000020725) #15	Ppp1r3e (ENSJJAG00000019272)	Slc7a8 (ENSJJAG00000023797) #18	Cebpe (ENSJJAG00000000275) #19	ENSJJAG00000002296 #21	ENSJJAG00000018175 #22	Psmb11 (ENSJJAG00000001807) #24	Psmb5 (ENSJJAG00000019820) #25	4931414P19Rik (ENSJJAG00000015115) #26	ENSJJAG00000019727 #27	ENSJJAG00000016771 #28	Prmt5 (ENSJJAG00000024276) #29	Rem2 (ENSJJAG00000012464) #31	Lrp10 (ENSJJAG00000010353) #32	Mmp14 (ENSJJAG00000005540) #33	Mrpl52 (ENSJJAG00000013789) #34	ENSJJAG00000004185	Or6e1 (ENSJJAG00000019078) #37	ENSJJAG00000010359	ENSJJAG00000022944	ENSJJAG00000022316
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	11	TRDC (ENSHGLG00000006155)	ENSHGLG00000041943	ENSHGLG00000034585	ENSHGLG00000045633	ENSHGLG00000006305	DAD1 (ENSHGLG00000048015)	ENSHGLG00000008034	ENSHGLG00000044684	ENSHGLG00000043000	ENSHGLG00000009022	ENSHGLG00000050001	ENSHGLG00000040599	ENSHGLG00000011086 #18	CEBPE (ENSHGLG00000011620) #19	CIROP (ENSHGLG00000035340) #20	ENSHGLG00000049606 #22	C14orf119 (ENSHGLG00000011980) #21	ENSHGLG00000018997 #22	CDH24 (ENSHGLG00000003051) #23	PSMB11 (ENSHGLG00000020072) #24	PSMB5 (ENSHGLG00000003365) #25	C14orf93 (ENSHGLG00000003743) #26	AJUBA (ENSHGLG00000004520) #27	HAUS4 (ENSHGLG00000002077) #28	PRMT5 (ENSHGLG00000002159) #29	RBM23 (ENSHGLG00000040941) #30	REM2 (ENSHGLG00000002476) #31	LRP10 (ENSHGLG00000003141) #32	MMP14 (ENSHGLG00000003308) #33	MRPL52 (ENSHGLG00000045369) #34	ENSHGLG00000003498 #35
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000034585	ENSHGLG00000045633	ENSHGLG00000006305	DAD1 (ENSHGLG00000048015)	ENSHGLG00000008034	ENSHGLG00000044684	ENSHGLG00000043000	ENSHGLG00000009022	ENSHGLG00000050001	ENSHGLG00000040599	ENSHGLG00000011086 #18	CEBPE (ENSHGLG00000011620) #19	CIROP (ENSHGLG00000035340) #20	ENSHGLG00000049606 #22	C14orf119 (ENSHGLG00000011980) #21	ENSHGLG00000018997 #22	CDH24 (ENSHGLG00000003051) #23	PSMB11 (ENSHGLG00000020072) #24	PSMB5 (ENSHGLG00000003365) #25	C14orf93 (ENSHGLG00000003743) #26	AJUBA (ENSHGLG00000004520) #27	HAUS4 (ENSHGLG00000002077) #28	PRMT5 (ENSHGLG00000002159) #29	RBM23 (ENSHGLG00000040941) #30	REM2 (ENSHGLG00000002476) #31	LRP10 (ENSHGLG00000003141) #32	MMP14 (ENSHGLG00000003308) #33	MRPL52 (ENSHGLG00000045369) #34	ENSHGLG00000003498 #35	ENSHGLG00000003344 #36	ENSHGLG00000033322
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37	ENSGT00390000016277.b
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37	ENSGT00390000016277.b
Long-tailed chinchilla	MODERN SPECIES	116	NGDN (ENSCLAG00000012885) #8	MYH7 (ENSCLAG00000014009) #9	MYH6 (ENSCLAG00000010116) #10	CMTM5 (ENSCLAG00000013030) #11	IL25 (ENSCLAG00000013634)	EFS (ENSCLAG00000013687) #12	SLC22A17 (ENSCLAG00000009528) #13	PABPN1 (ENSCLAG00000012423) #14	BCL2L2 (ENSCLAG00000011303) #15	PPP1R3E (ENSCLAG00000010035)	ENSCLAG00000010300 #16	ENSCLAG00000011910 #16	SLC7A8 (ENSCLAG00000010864) #18	CEBPE (ENSCLAG00000012477) #19	C14orf119 (ENSCLAG00000009464) #21	ACIN1 (ENSCLAG00000010588) #22	CDH24 (ENSCLAG00000011914) #23	PSMB11 (ENSCLAG00000010224) #24	PSMB5 (ENSCLAG00000011138) #25	C14orf93 (ENSCLAG00000010663) #26	AJUBA (ENSCLAG00000011137) #27	HAUS4 (ENSCLAG00000013026) #28	PRMT5 (ENSCLAG00000010579) #29	REM2 (ENSCLAG00000011939) #31	LRP10 (ENSCLAG00000010502) #32	MMP14 (ENSCLAG00000009784) #33	MRPL52 (ENSCLAG00000010931) #34	SLC7A7 (ENSCLAG00000011517) #35	OXA1L (ENSCLAG00000009417) #36	ENSCLAG00000009926 #37	ABHD4 (ENSCLAG00000012500)
Degu	MODERN SPECIES	317	AP1G2 (ENSODEG00000002984)	THTPA (ENSODEG00000002973)	ZFHX2 (ENSODEG00000002856) #7	NGDN (ENSODEG00000002730) #8	MYH7 (ENSODEG00000002613) #9	MYH6 (ENSODEG00000002284) #10	CMTM5 (ENSODEG00000002188) #11	IL25 (ENSODEG00000002172)	EFS (ENSODEG00000002155) #12	SLC22A17 (ENSODEG00000002123) #13	ENSODEG00000002083 #14	PPP1R3E (ENSODEG00000001965)	ENSODEG00000001949 #16	SLC7A8 (ENSODEG00000001928) #18	CEBPE (ENSODEG00000001920) #19	ENSODEG00000001841 #22	ENSODEG00000001803 #23	PSMB11 (ENSODEG00000018719) #24	ENSODEG00000001783	PSMB5 (ENSODEG00000001779) #25	C14orf93 (ENSODEG00000001756) #26	ENSODEG00000001742 #27	HAUS4 (ENSODEG00000001722) #28	PRMT5 (ENSODEG00000001672) #29	REM2 (ENSODEG00000001644) #31	LRP10 (ENSODEG00000001621) #32	MMP14 (ENSODEG00000001611) #33	MRPL52 (ENSODEG00000001600) #34	SLC7A7 (ENSODEG00000001562) #35	OXA1L (ENSODEG00000001527) #36	ENSODEG00000018736 #37
Guinea pig	MODERN SPECIES	13	ZFHX2 (ENSCPOG00000020268) #7	NGDN (ENSCPOG00000008240) #8	MYH7 (ENSCPOG00000007045) #9	MYH6 (ENSCPOG00000036217) #10	CMTM5 (ENSCPOG00000007027) #11	IL25 (ENSCPOG00000007025)	EFS (ENSCPOG00000019837) #12	SLC22A17 (ENSCPOG00000007020) #13	PABPN1 (ENSCPOG00000025574) #14	BCL2L2 (ENSCPOG00000031913) #15	PPP1R3E (ENSCPOG00000039856)	ENSCPOG00000025949 #16	SLC7A8 (ENSCPOG00000014051) #18	CEBPE (ENSCPOG00000014049) #19	C14orf119 (ENSCPOG00000036221) #21	ACIN1 (ENSCPOG00000027234) #22	CDH24 (ENSCPOG00000013121) #23	PSMB11 (ENSCPOG00000014048) #24	PSMB5 (ENSCPOG00000014047) #25	C14orf93 (ENSCPOG00000014044) #26	AJUBA (ENSCPOG00000023158) #27	HAUS4 (ENSCPOG00000003331) #28	PRMT5 (ENSCPOG00000014038) #29	REM2 (ENSCPOG00000024124) #31	LRP10 (ENSCPOG00000014495) #32	MMP14 (ENSCPOG00000024551) #33	MRPL52 (ENSCPOG00000009474) #34	SLC7A7 (ENSCPOG00000005730) #35	OXA1L (ENSCPOG00000022098) #36	ENSCPOG00000032843 #37	ABHD4 (ENSCPOG00000000850)
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763.j #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Marmotini	ANCESTRAL SPECIES	15	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763.j #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.o #36	ENSGT01090000260011.B.s #37
Marmotini_b	ANCESTRAL SPECIES	58	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763.j #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.o #36	ENSGT00910000148211
Squirrel	MODERN SPECIES	322	NGDN (ENSSTOG00000002637) #8	MYH7 (ENSSTOG00000002580) #9	CMTM5 (ENSSTOG00000002567) #11	IL25 (ENSSTOG00000002561)	EFS (ENSSTOG00000002556) #12	SLC22A17 (ENSSTOG00000020548) #13	PABPN1 (ENSSTOG00000029847) #14	BCL2L2 (ENSSTOG00000002538) #15	PPP1R3E (ENSSTOG00000024321)	ENSSTOG00000020653 #16	ENSSTOG00000031200 #16	RNF212B (ENSSTOG00000027132) #17	SLC7A8 (ENSSTOG00000007210) #18	CEBPE (ENSSTOG00000007204) #19	C14orf119 (ENSSTOG00000021954) #21	ACIN1 (ENSSTOG00000007169) #22	CDH24 (ENSSTOG00000007148) #23	PSMB11 (ENSSTOG00000007142) #24	PSMB5 (ENSSTOG00000007134) #25	C14orf93 (ENSSTOG00000007124) #26	AJUBA (ENSSTOG00000023817) #27	HAUS4 (ENSSTOG00000020110) #28	PRMT5 (ENSSTOG00000010374) #29	RBM23 (ENSSTOG00000010354) #30	REM2 (ENSSTOG00000010340) #31	LRP10 (ENSSTOG00000010323) #32	MMP14 (ENSSTOG00000027121) #33	MRPL52 (ENSSTOG00000010317) #34	SLC7A7 (ENSSTOG00000003328) #35	ENSSTOG00000003318	ENSSTOG00000032926 #37
Arctic ground squirrel	MODERN SPECIES	329	ZFHX2 (ENSUPAG00010010574) #7	NGDN (ENSUPAG00010010585) #8	MYH6 (ENSUPAG00010010620) #10	CMTM5 (ENSUPAG00010010806) #11	IL25 (ENSUPAG00010010826)	EFS (ENSUPAG00010010832) #12	SLC22A17 (ENSUPAG00010010867) #13	PABPN1 (ENSUPAG00010010902) #14	BCL2L2 (ENSUPAG00010010908) #15	PPP1R3E (ENSUPAG00010010914)	HOMEZ (ENSUPAG00010010920) #16	RNF212B (ENSUPAG00010010924) #17	SLC7A8 (ENSUPAG00010010946) #18	C14orf119 (ENSUPAG00010010952) #21	CEBPE (ENSUPAG00010010976) #19	ACIN1 (ENSUPAG00010010981) #22	CDH24 (ENSUPAG00010011199) #23	PSMB11 (ENSUPAG00010011206) #24	PSMB5 (ENSUPAG00010011210) #25	C14orf93 (ENSUPAG00010011216) #26	AJUBA (ENSUPAG00010011224) #27	HAUS4 (ENSUPAG00010011240) #28	PRMT5 (ENSUPAG00010011261) #29	RBM23 (ENSUPAG00010011269) #30	LRP10 (ENSUPAG00010011283) #32	MMP14 (ENSUPAG00010011304) #33	MRPL52 (ENSUPAG00010011316) #34	SLC7A7 (ENSUPAG00010011328) #35	ENSUPAG00010011358 #36	ENSUPAG00010011365	ENSUPAG00010011367
Alpin marmot	MODERN SPECIES	1	MYH7 (ENSMMMG00000013220) #9	ENSMMMG00000013308	CMTM5 (ENSMMMG00000013324) #11	IL25 (ENSMMMG00000013338)	EFS (ENSMMMG00000013356) #12	SLC22A17 (ENSMMMG00000013391) #13	PABPN1 (ENSMMMG00000013456) #14	BCL2L2 (ENSMMMG00000013458) #15	PPP1R3E (ENSMMMG00000013472)	ENSMMMG00000013476 #16	RNF212B (ENSMMMG00000013479) #17	SLC7A8 (ENSMMMG00000013507) #18	CEBPE (ENSMMMG00000013529) #19	CIROP (ENSMMMG00000013535) #20	C14orf119 (ENSMMMG00000013557) #21	ACIN1 (ENSMMMG00000013562) #22	CDH24 (ENSMMMG00000013665) #23	PSMB11 (ENSMMMG00000013681) #24	PSMB5 (ENSMMMG00000013699) #25	C14orf93 (ENSMMMG00000013705) #26	AJUBA (ENSMMMG00000013718) #27	HAUS4 (ENSMMMG00000013733) #28	PRMT5 (ENSMMMG00000013742) #29	RBM23 (ENSMMMG00000013775) #30	REM2 (ENSMMMG00000013781) #31	LRP10 (ENSMMMG00000013796) #32	MMP14 (ENSMMMG00000013801) #33	MRPL52 (ENSMMMG00000013813) #34	SLC7A7 (ENSMMMG00000013825) #35	ENSMMMG00000013841 #36	ENSMMMG00000013866 #37
Eurasian red squirrel	MODERN SPECIES	11	MYH7 (ENSSVLG00005001982) #9	MYH6 (ENSSVLG00005002063) #10	CMTM5 (ENSSVLG00005002140) #11	IL25 (ENSSVLG00005002226)	EFS (ENSSVLG00005002271) #12	SLC22A17 (ENSSVLG00005002323) #13	PABPN1 (ENSSVLG00005002342) #14	BCL2L2 (ENSSVLG00005002371) #15	PPP1R3E (ENSSVLG00005002379)	HOMEZ (ENSSVLG00005002399) #16	RNF212B (ENSSVLG00005002422) #17	ENSSVLG00005002458	SLC7A8 (ENSSVLG00005002489) #18	CEBPE (ENSSVLG00005002534) #19	C14orf119 (ENSSVLG00005002545) #21	ACIN1 (ENSSVLG00005002620) #22	CDH24 (ENSSVLG00005002877) #23	PSMB11 (ENSSVLG00005002893) #24	ENSSVLG00005002903 #25	C14orf93 (ENSSVLG00005002934) #26	AJUBA (ENSSVLG00005002965) #27	HAUS4 (ENSSVLG00005002983) #28	PRMT5 (ENSSVLG00005003037) #29	RBM23 (ENSSVLG00005003194) #30	REM2 (ENSSVLG00005003310) #31	LRP10 (ENSSVLG00005003327) #32	MMP14 (ENSSVLG00005003350) #33	ENSSVLG00005003381 #34	SLC7A7 (ENSSVLG00005003413) #35	OXA1L (ENSSVLG00005003453) #36	ENSSVLG00005003497
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Rabbit	MODERN SPECIES	8	MYH7 (ENSOCUG00000011037) #9	CMTM5 (ENSOCUG00000011032) #11	IL25 (ENSOCUG00000011028)	EFS (ENSOCUG00000021587) #12	SLC22A17 (ENSOCUG00000016897) #13	PABPN1 (ENSOCUG00000016174) #14	BCL2L2 (ENSOCUG00000011026) #15	PPP1R3E (ENSOCUG00000027484)	HOMEZ (ENSOCUG00000012510) #16	RNF212B (ENSOCUG00000021958) #17	ENSOCUG00000038472	SLC7A8 (ENSOCUG00000001685) #18	CEBPE (ENSOCUG00000022235) #19	CIROP (ENSOCUG00000038463) #20	C14orf119 (ENSOCUG00000001684) #21	ACIN1 (ENSOCUG00000001678) #22	CDH24 (ENSOCUG00000013116) #23	PSMB11 (ENSOCUG00000013112) #24	PSMB5 (ENSOCUG00000013109) #25	C14orf93 (ENSOCUG00000013097) #26	ENSOCUG00000001058 #27	HAUS4 (ENSOCUG00000013088) #28	PRMT5 (ENSOCUG00000002013) #29	RBM23 (ENSOCUG00000002006) #30	ENSOCUG00000001255 #31	LRP10 (ENSOCUG00000016380) #32	MRPL52 (ENSOCUG00000010240) #34	SLC7A7 (ENSOCUG00000000724) #35	OXA1L (ENSOCUG00000000720) #36	ENSOCUG00000026780 #37	ENSOCUG00000021544 #37
Pika	MODERN SPECIES	5289												ENSOPRG00000018425 #17	SLC7A8 (ENSOPRG00000016430) #18	CEBPE (ENSOPRG00000016428) #19	C14orf119 (ENSOPRG00000016425) #21	ACIN1 (ENSOPRG00000016402) #22	ENSOPRG00000016393 #23	ENSOPRG00000016373 #25
Tree shrew	MODERN SPECIES	5989														SLC7A8 (ENSTBEG00000017287) #18	CEBPE (ENSTBEG00000017246) #19	ENSTBEG00000016605 #22	PSMB5 (ENSTBEG00000016334) #25
Primates	ANCESTRAL SPECIES	2	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000154606.`c.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000154606.`c.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Hominidae	ANCESTRAL SPECIES	14	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000154606.`c.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000154606.`c.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00910000147345	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b
Gorilla	MODERN SPECIES	5	MYH7 (ENSGGOG00000017139) #9	MYH6 (ENSGGOG00000017127) #10	CMTM5 (ENSGGOG00000017125) #11	IL25 (ENSGGOG00000017122)	EFS (ENSGGOG00000017117) #12	SLC22A17 (ENSGGOG00000017113) #13	ENSGGOG00000022683 #14	ENSGGOG00000024449	HOMEZ (ENSGGOG00000002195) #16	ENSGGOG00000002191 #17	ENSGGOG00000041054	SLC7A8 (ENSGGOG00000007423) #18	CEBPE (ENSGGOG00000007419) #19	CIROP (ENSGGOG00000043009) #20	ENSGGOG00000025103	ACIN1 (ENSGGOG00000007403) #22	CDH24 (ENSGGOG00000007398) #23	PSMB11 (ENSGGOG00000007392) #24	PSMB5 (ENSGGOG00000026856) #25	C14orf93 (ENSGGOG00000014548) #26	AJUBA (ENSGGOG00000014539) #27	HAUS4 (ENSGGOG00000007504) #28	PRMT5 (ENSGGOG00000010839) #29	RBM23 (ENSGGOG00000015707) #30	REM2 (ENSGGOG00000015704) #31	LRP10 (ENSGGOG00000015695) #32	MMP14 (ENSGGOG00000001650) #33	MRPL52 (ENSGGOG00000001649) #34	SLC7A7 (ENSGGOG00000003694) #35	OXA1L (ENSGGOG00000003688) #36	ABHD4 (ENSGGOG00000007368)
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000154606.`c.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b
Pan	ANCESTRAL SPECIES	8	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b
Chimpanzee	MODERN SPECIES	5	MYH7 (ENSPTRG00000042734) #9	MYH6 (ENSPTRG00000006175) #10	CMTM5 (ENSPTRG00000006172) #11	IL25 (ENSPTRG00000006171)	EFS (ENSPTRG00000006170) #12	SLC22A17 (ENSPTRG00000006169) #13	BCL2L2 (ENSPTRG00000006167) #14	PPP1R3E (ENSPTRG00000034537)	HOMEZ (ENSPTRG00000052103) #16	RNF212B (ENSPTRG00000034381) #17	MGST1 (ENSPTRG00000004737)	SLC7A8 (ENSPTRG00000006164) #18	CEBPE (ENSPTRG00000006162) #19	CIROP (ENSPTRG00000044020) #20	C14H14orf119 (ENSPTRG00000006161)	ACIN1 (ENSPTRG00000006159) #22	CDH24 (ENSPTRG00000006158) #23	PSMB5 (ENSPTRG00000006156) #25	C14H14orf93 (ENSPTRG00000006155) #26	AJUBA (ENSPTRG00000006154) #27	HAUS4 (ENSPTRG00000006153) #28	PRMT5 (ENSPTRG00000006152) #29	RBM23 (ENSPTRG00000006151) #30	REM2 (ENSPTRG00000006150) #31	LRP10 (ENSPTRG00000006149) #32	MMP14 (ENSPTRG00000006148) #33	MRPL52 (ENSPTRG00000006147) #34	SLC7A7 (ENSPTRG00000006146) #35	OXA1L (ENSPTRG00000006145) #36	ABHD4 (ENSPTRG00000006143)	DAD1 (ENSPTRG00000006141)
Bonobo	MODERN SPECIES	5	NGDN (ENSPPAG00000039327) #8	MYH7 (ENSPPAG00000038477) #9	MYH6 (ENSPPAG00000037614) #10	CMTM5 (ENSPPAG00000018100) #11	IL25 (ENSPPAG00000027328)	EFS (ENSPPAG00000039022) #12	SLC22A17 (ENSPPAG00000030257) #13	ENSPPAG00000028984 #14	PPP1R3E (ENSPPAG00000027487)	HOMEZ (ENSPPAG00000037914) #16	RNF212B (ENSPPAG00000030748) #17	SLC7A8 (ENSPPAG00000029356) #18	CEBPE (ENSPPAG00000000817) #19	CIROP (ENSPPAG00000041297) #20	ENSPPAG00000037712	ACIN1 (ENSPPAG00000041392) #22	CDH24 (ENSPPAG00000035182) #23	PSMB11 (ENSPPAG00000005580) #24	PSMB5 (ENSPPAG00000043004) #25	C14orf93 (ENSPPAG00000036818) #26	AJUBA (ENSPPAG00000031512) #27	HAUS4 (ENSPPAG00000040161) #28	PRMT5 (ENSPPAG00000032055) #29	RBM23 (ENSPPAG00000037922) #30	REM2 (ENSPPAG00000041292) #31	LRP10 (ENSPPAG00000029431) #32	MMP14 (ENSPPAG00000037241) #33	MRPL52 (ENSPPAG00000033265) #34	SLC7A7 (ENSPPAG00000036954) #35	OXA1L (ENSPPAG00000034085) #36	ABHD4 (ENSPPAG00000030993)
Human	MODERN SPECIES	5	MYH6 (ENSG00000197616) #10	CMTM5 (ENSG00000166091) #11	IL25 (ENSG00000166090)	EFS (ENSG00000100842) #12	SLC22A17 (ENSG00000092096) #13	PABPN1 (ENSG00000100836) #14	BCL2L2-PABPN1 (ENSG00000258643)	BCL2L2 (ENSG00000129473) #15	PPP1R3E (ENSG00000235194)	HOMEZ (ENSG00000290292) #16	RNF212B (ENSG00000215277) #17	SLC7A8 (ENSG00000092068) #18	CEBPE (ENSG00000092067) #19	CIROP (ENSG00000283654) #20	C14orf119 (ENSG00000179933) #21	ACIN1 (ENSG00000100813) #22	CDH24 (ENSG00000139880) #23	PSMB11 (ENSG00000222028) #24	PSMB5 (ENSG00000100804) #25	C14orf93 (ENSG00000100802) #26	AJUBA (ENSG00000129474) #27	ENSG00000259132	HAUS4 (ENSG00000092036) #28	PRMT5 (ENSG00000100462) #29	RBM23 (ENSG00000100461) #30	REM2 (ENSG00000139890) #31	LRP10 (ENSG00000197324) #32	MMP14 (ENSG00000157227) #33	MRPL52 (ENSG00000172590) #34	SLC7A7 (ENSG00000155465) #35	OXA1L (ENSG00000155463) #36
Orangutan	MODERN SPECIES	5	NGDN (ENSPPYG00000005670) #8	MYH7 (ENSPPYG00000005669) #9	MYH6 (ENSPPYG00000037711) #10	CMTM5 (ENSPPYG00000005668) #11	IL25 (ENSPPYG00000005667)	EFS (ENSPPYG00000005666) #12	SLC22A17 (ENSPPYG00000005665) #13	PPP1R3E (ENSPPYG00000029653)	ENSPPYG00000005663 #14	HOMEZ (ENSPPYG00000034774) #16	RNF212B (ENSPPYG00000037980) #17	SLC7A8 (ENSPPYG00000005660) #18	CEBPE (ENSPPYG00000005659) #19	CIROP (ENSPPYG00000037705) #20	ENSPPYG00000005658	ACIN1 (ENSPPYG00000005657) #22	CDH24 (ENSPPYG00000005656) #23	PSMB5 (ENSPPYG00000041109) #25	ENSPPYG00000005655 #24	C14H14orf93 (ENSPPYG00000005653) #26	AJUBA (ENSPPYG00000005652) #27	HAUS4 (ENSPPYG00000005651) #28	PRMT5 (ENSPPYG00000005650) #29	RBM23 (ENSPPYG00000005649) #30	REM2 (ENSPPYG00000005648) #31	LRP10 (ENSPPYG00000005647) #32	MMP14 (ENSPPYG00000005646) #33	ENSPPYG00000005645 #34	SLC7A7 (ENSPPYG00000005643) #35	OXA1L (ENSPPYG00000005642) #36	ENSPPYG00000019928
Gibbon	MODERN SPECIES	14	ZFHX2 (ENSNLEG00000015078) #7	NGDN (ENSNLEG00000027739) #8	MYH7 (ENSNLEG00000015043) #9	MYH6 (ENSNLEG00000027888) #10	CMTM5 (ENSNLEG00000015036) #11	ENSNLEG00000015034	EFS (ENSNLEG00000015023) #12	SLC22A17 (ENSNLEG00000015017) #13	ENSNLEG00000015007 #14	HOMEZ (ENSNLEG00000014999) #16	RNF212B (ENSNLEG00000014991) #17	SLC7A8 (ENSNLEG00000014960) #18	CEBPE (ENSNLEG00000014958) #19	CIROP (ENSNLEG00000031249) #20	C14orf119 (ENSNLEG00000014956) #21	ACIN1 (ENSNLEG00000014920) #22	CDH24 (ENSNLEG00000014900) #23	PSMB5 (ENSNLEG00000034685) #25	C14orf93 (ENSNLEG00000014883) #26	ENSNLEG00000014877 #27	HAUS4 (ENSNLEG00000014853) #28	PRMT5 (ENSNLEG00000014810) #29	RBM23 (ENSNLEG00000014792) #30	REM2 (ENSNLEG00000014788) #31	LRP10 (ENSNLEG00000014773) #32	MMP14 (ENSNLEG00000014762) #33	SLC7A7 (ENSNLEG00000014725) #35	OXA1L (ENSNLEG00000014684) #36	ENSNLEG00000028419 #37	ENSNLEG00000034695	ABHD4 (ENSNLEG00000035873)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000154606.`c.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000154606.`c.a #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b.ab
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b.ab
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b.ab
Olive baboon	MODERN SPECIES	17	ZFHX2 (ENSPANG00000020555) #7	NGDN (ENSPANG00000026138) #8	ENSPANG00000014837	MYH6 (ENSPANG00000023391) #10	CMTM5 (ENSPANG00000022753) #11	IL25 (ENSPANG00000030268)	EFS (ENSPANG00000019642) #12	PABPN1 (ENSPANG00000021100) #14	BCL2L2 (ENSPANG00000041079) #15	HOMEZ (ENSPANG00000004893) #16	RNF212B (ENSPANG00000026177) #17	SLC7A8 (ENSPANG00000024120) #18	CEBPE (ENSPANG00000036119) #19	CIROP (ENSPANG00000033367) #20	C14orf119 (ENSPANG00000019645) #21	ACIN1 (ENSPANG00000019644) #22	CDH24 (ENSPANG00000019643) #23	PSMB11 (ENSPANG00000017114) #24	ENSPANG00000015305 #25	C14orf93 (ENSPANG00000011161) #26	AJUBA (ENSPANG00000011738) #27	HAUS4 (ENSPANG00000015306) #28	PRMT5 (ENSPANG00000017607) #29	RBM23 (ENSPANG00000001324) #30	REM2 (ENSPANG00000026142) #31	LRP10 (ENSPANG00000003911) #32	MMP14 (ENSPANG00000023206) #33	MRPL52 (ENSPANG00000021102) #34	SLC7A7 (ENSPANG00000020911) #35	OXA1L (ENSPANG00000011741) #36	ABHD4 (ENSPANG00000003912)
Cercopithecinae_d	ANCESTRAL SPECIES	109	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b.ab
Drill	MODERN SPECIES	1047	ENSMLEG00000005070	MYH7 (ENSMLEG00000033039) #9	MYH6 (ENSMLEG00000034827) #10	CMTM5 (ENSMLEG00000028694) #11	IL25 (ENSMLEG00000029698)	EFS (ENSMLEG00000035707) #12	SLC22A17 (ENSMLEG00000041637) #13	ENSMLEG00000043862 #14	HOMEZ (ENSMLEG00000042580) #16	ENSMLEG00000023797	RNF212B (ENSMLEG00000029180) #17	SLC7A8 (ENSMLEG00000042382) #18	CEBPE (ENSMLEG00000029229) #19	CIROP (ENSMLEG00000035762) #20	C14orf119 (ENSMLEG00000027439) #21	ACIN1 (ENSMLEG00000036983) #22	CDH24 (ENSMLEG00000033931) #23	PSMB11 (ENSMLEG00000013212) #24	PSMB5 (ENSMLEG00000042905) #25	C14orf93 (ENSMLEG00000040701) #26	AJUBA (ENSMLEG00000001372) #27	ENSMLEG00000044268 #28	PRMT5 (ENSMLEG00000035801) #29	RBM23 (ENSMLEG00000039954) #30	REM2 (ENSMLEG00000032118) #31	LRP10 (ENSMLEG00000043127) #32	MMP14 (ENSMLEG00000000094) #33	MRPL52 (ENSMLEG00000035746) #34	SLC7A7 (ENSMLEG00000014136) #35	OXA1L (ENSMLEG00000029808) #36	ENSMLEG00000043691
Sooty mangabey	MODERN SPECIES	288	MYH7 (ENSCATG00000042811) #9	MYH6 (ENSCATG00000033586) #10	CMTM5 (ENSCATG00000012549) #11	IL25 (ENSCATG00000021749)	EFS (ENSCATG00000012099) #12	SLC22A17 (ENSCATG00000012319) #13	PABPN1 (ENSCATG00000038536) #14	PPP1R3E (ENSCATG00000018562)	HOMEZ (ENSCATG00000013395) #16	RNF212B (ENSCATG00000039626) #17	ENSCATG00000022670	SLC7A8 (ENSCATG00000036217) #18	CEBPE (ENSCATG00000044549) #19	CIROP (ENSCATG00000044967) #20	C14orf119 (ENSCATG00000021812) #21	ACIN1 (ENSCATG00000044489) #22	CDH24 (ENSCATG00000011377) #23	PSMB11 (ENSCATG00000010453) #24	PSMB5 (ENSCATG00000044133) #25	C14orf93 (ENSCATG00000044847) #26	AJUBA (ENSCATG00000032482) #27	ENSCATG00000041460 #28	PRMT5 (ENSCATG00000014579) #29	RBM23 (ENSCATG00000017832) #30	REM2 (ENSCATG00000012864) #31	LRP10 (ENSCATG00000041990) #32	MMP14 (ENSCATG00000003284) #33	MRPL52 (ENSCATG00000030157) #34	ENSCATG00000030947 #35	OXA1L (ENSCATG00000009400) #36	ENSCATG00000022305
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00390000016277.b.ab
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00910000145938	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00940000163505.a.a.a.b.b.b	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36
Crab-eating macaque	MODERN SPECIES	17	MYH6 (ENSMFAG00000000323) #10	CMTM5 (ENSMFAG00000030275) #11	IL25 (ENSMFAG00000002200)	EFS (ENSMFAG00000037287) #12	SLC22A17 (ENSMFAG00000039582) #13	ENSMFAG00000032183 #14	PPP1R3E (ENSMFAG00000041616)	ENSMFAG00000065284	ENSMFAG00000063150	HOMEZ (ENSMFAG00000032119) #16	RNF212B (ENSMFAG00000041507) #17	SLC7A8 (ENSMFAG00000001018) #18	CEBPE (ENSMFAG00000065070) #19	CIROP (ENSMFAG00000039515) #20	ENSMFAG00000063199	ACIN1 (ENSMFAG00000044437) #22	CDH24 (ENSMFAG00000002248) #23	PSMB5 (ENSMFAG00000040803) #25	PSMB11 (ENSMFAG00000010271) #24	ENSMFAG00000035808	C14orf93 (ENSMFAG00000001383) #26	AJUBA (ENSMFAG00000055086) #27	HAUS4 (ENSMFAG00000042332) #28	PRMT5 (ENSMFAG00000001324) #29	RBM23 (ENSMFAG00000037595) #30	REM2 (ENSMFAG00000032788) #31	LRP10 (ENSMFAG00000040578) #32	MMP14 (ENSMFAG00000038289) #33	MRPL52 (ENSMFAG00000000620) #34	SLC7A7 (ENSMFAG00000045060) #35	OXA1L (ENSMFAG00000015207) #36
Rhesus	MODERN SPECIES	17	NGDN (ENSMMUG00000014766) #8	ENSMMUG00000029420	MYH7 (ENSMMUG00000014762) #9	CMTM5 (ENSMMUG00000014752) #11	IL25 (ENSMMUG00000014751)	EFS (ENSMMUG00000014750) #12	SLC22A17 (ENSMMUG00000014748) #13	ENSMMUG00000014747 #14	PPP1R3E (ENSMMUG00000014745)	HOMEZ (ENSMMUG00000014744) #16	RNF212B (ENSMMUG00000014743) #17	SLC7A8 (ENSMMUG00000019653) #18	CEBPE (ENSMMUG00000056675) #19	CIROP (ENSMMUG00000061279) #20	ENSMMUG00000012978	ACIN1 (ENSMMUG00000012979) #22	CDH24 (ENSMMUG00000006009) #23	PSMB5 (ENSMMUG00000006007) #25	PSMB11 (ENSMMUG00000006008) #24	ENSMMUG00000013585	C7H14orf93 (ENSMMUG00000008477) #26	AJUBA (ENSMMUG00000008475) #27	HAUS4 (ENSMMUG00000002668) #28	PRMT5 (ENSMMUG00000001035) #29	RBM23 (ENSMMUG00000018381) #30	REM2 (ENSMMUG00000016098) #31	LRP10 (ENSMMUG00000016100) #32	MMP14 (ENSMMUG00000013665) #33	MRPL52 (ENSMMUG00000013663) #34	SLC7A7 (ENSMMUG00000000413) #35	OXA1L (ENSMMUG00000000411) #36
Pig-tailed macaque	MODERN SPECIES	287	ENSMNEG00000036518	MYH6 (ENSMNEG00000039383) #10	CMTM5 (ENSMNEG00000026515) #11	IL25 (ENSMNEG00000037183)	EFS (ENSMNEG00000045153) #12	SLC22A17 (ENSMNEG00000041693) #13	ENSMNEG00000045065 #14	PPP1R3E (ENSMNEG00000005856)	HOMEZ (ENSMNEG00000037267) #16	RNF212B (ENSMNEG00000033200) #17	ENSMNEG00000025147	SLC7A8 (ENSMNEG00000040287) #18	CEBPE (ENSMNEG00000019353) #19	CIROP (ENSMNEG00000039815) #20	ENSMNEG00000044239	ACIN1 (ENSMNEG00000035938) #22	CDH24 (ENSMNEG00000030948) #23	PSMB5 (ENSMNEG00000044213) #25	C14orf93 (ENSMNEG00000039045) #26	AJUBA (ENSMNEG00000033852) #27	HAUS4 (ENSMNEG00000040020) #28	PRMT5 (ENSMNEG00000035535) #29	RBM23 (ENSMNEG00000042442) #30	REM2 (ENSMNEG00000028496) #31	LRP10 (ENSMNEG00000039487) #32	MMP14 (ENSMNEG00000030751) #33	MRPL52 (ENSMNEG00000029791) #34	SLC7A7 (ENSMNEG00000043785) #35	OXA1L (ENSMNEG00000031247) #36	ENSMNEG00000033846	DAD1 (ENSMNEG00000043891)
Vervet Monkey	MODERN SPECIES	21	NGDN (ENSCSAG00000015952) #8	MYH7 (ENSCSAG00000015960) #9	MYH6 (ENSCSAG00000015987) #10	CMTM5 (ENSCSAG00000016008) #11	IL25 (ENSCSAG00000016015)	EFS (ENSCSAG00000016019) #12	SLC22A17 (ENSCSAG00000016025) #13	PABPN1 (ENSCSAG00000016036) #14	BCL2L2 (ENSCSAG00000016046) #15	PPP1R3E (ENSCSAG00000016050)	HOMEZ (ENSCSAG00000016052) #16	RNF212B (ENSCSAG00000016072) #17	SLC7A8 (ENSCSAG00000016082) #18	CEBPE (ENSCSAG00000016086) #19	ENSCSAG00000016091	ACIN1 (ENSCSAG00000016098) #22	CDH24 (ENSCSAG00000016106) #23	PSMB11 (ENSCSAG00000019676) #24	PSMB5 (ENSCSAG00000016112) #25	C14orf93 (ENSCSAG00000016115) #26	AJUBA (ENSCSAG00000016121) #27	HAUS4 (ENSCSAG00000016126) #28	PRMT5 (ENSCSAG00000016179) #29	RBM23 (ENSCSAG00000016213) #30	REM2 (ENSCSAG00000016222) #31	LRP10 (ENSCSAG00000016235) #32	MMP14 (ENSCSAG00000016239) #33	MRPL52 (ENSCSAG00000016242) #34	SLC7A7 (ENSCSAG00000016247) #35	OXA1L (ENSCSAG00000016254) #36	ABHD4 (ENSCSAG00000016272)
Rhinopithecus	ANCESTRAL SPECIES	128	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.ac #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634.g #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Golden snub-nosed monkey	MODERN SPECIES	2083		MYH6 (ENSRROG00000031611) #10	CMTM5 (ENSRROG00000010686) #11	IL25 (ENSRROG00000034364)	EFS (ENSRROG00000045351) #12	SLC22A17 (ENSRROG00000043102) #13	ENSRROG00000045535 #14	PPP1R3E (ENSRROG00000040827)	HOMEZ (ENSRROG00000044445) #16	ENSRROG00000011670	RNF212B (ENSRROG00000010998) #17	SLC7A8 (ENSRROG00000035251) #18	CEBPE (ENSRROG00000039878) #19	CIROP (ENSRROG00000029112) #20	C14orf119 (ENSRROG00000028124) #21	ACIN1 (ENSRROG00000003676) #22	CDH24 (ENSRROG00000043868) #23	PSMB11 (ENSRROG00000025908) #24	PSMB5 (ENSRROG00000034076) #25	C14orf93 (ENSRROG00000007559) #26	AJUBA (ENSRROG00000040110) #27	ENSRROG00000044756 #28	PRMT5 (ENSRROG00000028985) #29	RBM23 (ENSRROG00000044026) #30	REM2 (ENSRROG00000000769) #31	LRP10 (ENSRROG00000045101) #32	MMP14 (ENSRROG00000032097) #33	MRPL52 (ENSRROG00000038692) #34	SLC7A7 (ENSRROG00000036587) #35	OXA1L (ENSRROG00000031458) #36	ENSRROG00000003728 #37
Black snub-nosed monkey	MODERN SPECIES	2556	ZFHX2 (ENSRBIG00000040933) #7	NGDN (ENSRBIG00000035850) #8	MYH7 (ENSRBIG00000044942) #9	CMTM5 (ENSRBIG00000041910) #11	IL25 (ENSRBIG00000037502)	EFS (ENSRBIG00000037519) #12	SLC22A17 (ENSRBIG00000028397) #13	ENSRBIG00000040762 #14	PPP1R3E (ENSRBIG00000038126)	HOMEZ (ENSRBIG00000044266) #16	RNF212B (ENSRBIG00000023762) #17	SLC7A8 (ENSRBIG00000034720) #18	CEBPE (ENSRBIG00000040073) #19	CIROP (ENSRBIG00000042248) #20	C14orf119 (ENSRBIG00000029689) #21	ACIN1 (ENSRBIG00000031308) #22	CDH24 (ENSRBIG00000030527) #23	ENSRBIG00000038153 #24	ENSRBIG00000035585 #25	C14orf93 (ENSRBIG00000006042) #26	AJUBA (ENSRBIG00000039769) #27	ENSRBIG00000028589 #28	PRMT5 (ENSRBIG00000033709) #29	RBM23 (ENSRBIG00000039276) #30	REM2 (ENSRBIG00000031050) #31	LRP10 (ENSRBIG00000030290) #32	MMP14 (ENSRBIG00000041147) #33	MRPL52 (ENSRBIG00000016834) #34	SLC7A7 (ENSRBIG00000036121) #35	OXA1L (ENSRBIG00000043882) #36	ENSRBIG00000005098 #37
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.a #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.a #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00910000147345	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.a #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Capuchin	MODERN SPECIES	170	NGDN (ENSCCAG00000023047) #8	MYH7 (ENSCCAG00000023760) #9	MYH6 (ENSCCAG00000033203) #10	CMTM5 (ENSCCAG00000032505) #11	IL25 (ENSCCAG00000034601)	EFS (ENSCCAG00000034276) #12	SLC22A17 (ENSCCAG00000026468) #13	BCL2L2-PABPN1 (ENSCCAG00000033954) #14	PPP1R3E (ENSCCAG00000020969)	HOMEZ (ENSCCAG00000012111) #16	ENSCCAG00000024579	RNF212B (ENSCCAG00000023177) #17	SLC7A8 (ENSCCAG00000036899) #18	CEBPE (ENSCCAG00000019835) #19	LMLN2 (ENSCCAG00000030416) #20	ACIN1 (ENSCCAG00000029776) #22	CDH24 (ENSCCAG00000029972) #23	ENSCCAG00000032430 #25	C14orf93 (ENSCCAG00000009885) #26	AJUBA (ENSCCAG00000035773) #27	HAUS4 (ENSCCAG00000033831) #28	PRMT5 (ENSCCAG00000034980) #29	ENSCCAG00000025114 #30	REM2 (ENSCCAG00000034864) #31	LRP10 (ENSCCAG00000032914) #32	MMP14 (ENSCCAG00000023613) #33	MRPL52 (ENSCCAG00000035013) #34	SLC7A7 (ENSCCAG00000031142) #35	OXA1L (ENSCCAG00000036442) #36	ABHD4 (ENSCCAG00000029397)	ENSCCAG00000035365
Bolivian squirrel monkey	MODERN SPECIES	52	THTPA (ENSSBOG00000024811)	ZFHX2 (ENSSBOG00000036225) #7	NGDN (ENSSBOG00000029466) #8	MYH7 (ENSSBOG00000029885) #9	MYH6 (ENSSBOG00000020492) #10	CMTM5 (ENSSBOG00000027769) #11	IL25 (ENSSBOG00000026885)	EFS (ENSSBOG00000012971) #12	SLC22A17 (ENSSBOG00000014037) #13	PABPN1 (ENSSBOG00000026930) #14	HOMEZ (ENSSBOG00000023906) #16	RNF212B (ENSSBOG00000020364) #17	SLC7A8 (ENSSBOG00000023631) #18	CEBPE (ENSSBOG00000029783) #19	CIROP (ENSSBOG00000023270) #20	ACIN1 (ENSSBOG00000032127) #22	CDH24 (ENSSBOG00000027998) #23	PSMB11 (ENSSBOG00000008921) #24	PSMB5 (ENSSBOG00000030520) #25	C14orf93 (ENSSBOG00000018297) #26	AJUBA (ENSSBOG00000028963) #27	HAUS4 (ENSSBOG00000023415) #28	PRMT5 (ENSSBOG00000036125) #29	ENSSBOG00000023037 #30	REM2 (ENSSBOG00000023345) #31	LRP10 (ENSSBOG00000033889) #32	MMP14 (ENSSBOG00000026846) #33	MRPL52 (ENSSBOG00000022662) #34	SLC7A7 (ENSSBOG00000032553) #35	OXA1L (ENSSBOG00000028461) #36	ENSSBOG00000005105 #37
Marmoset	MODERN SPECIES	1	ZFHX2 (ENSCJAG00000007523) #7	THTPA (ENSCJAG00000007522)	NGDN (ENSCJAG00000007530) #8	MYH7 (ENSCJAG00000007545) #9	CMTM5 (ENSCJAG00000007844) #11	IL25 (ENSCJAG00000007874)	EFS (ENSCJAG00000007915) #12	PABPN1 (ENSCJAG00000007960) #14	PPP1R3E (ENSCJAG00000046304)	HOMEZ (ENSCJAG00000076572) #16	RNF212B (ENSCJAG00000007807) #17	SLC7A8 (ENSCJAG00000008020) #18	CEBPE (ENSCJAG00000042468) #19	CIROP (ENSCJAG00000044082) #20	ENSCJAG00000062341 #21	ACIN1 (ENSCJAG00000008076) #22	CDH24 (ENSCJAG00000008170) #23	PSMB5 (ENSCJAG00000042177) #25	PSMB11 (ENSCJAG00000046458) #24	ENSCJAG00000083931	C14orf93 (ENSCJAG00000008320) #26	AJUBA (ENSCJAG00000008376) #27	ENSCJAG00000008389 #28	ENSCJAG00000008409 #29	RBM23 (ENSCJAG00000008482) #30	REM2 (ENSCJAG00000037144) #31	LRP10 (ENSCJAG00000008522) #32	MMP14 (ENSCJAG00000008538) #33	MRPL52 (ENSCJAG00000035615) #34	SLC7A7 (ENSCJAG00000008592) #35	ENSCJAG00000082162
Mas night monkey	MODERN SPECIES	819	ZFHX2 (ENSANAG00000034727) #7	NGDN (ENSANAG00000037066) #8	MYH6 (ENSANAG00000036061) #10	CMTM5 (ENSANAG00000028216) #11	IL25 (ENSANAG00000024177)	EFS (ENSANAG00000037830) #12	SLC22A17 (ENSANAG00000022109) #13	ENSANAG00000024513 #14	PPP1R3E (ENSANAG00000037246)	HOMEZ (ENSANAG00000026234) #16	ENSANAG00000024152	SLC7A8 (ENSANAG00000023721) #18	CEBPE (ENSANAG00000030415) #19	RNF212B (ENSANAG00000027323) #17	CIROP (ENSANAG00000017674) #20	ACIN1 (ENSANAG00000034343) #22	CDH24 (ENSANAG00000023080) #23	PSMB5 (ENSANAG00000029997) #25	C14orf93 (ENSANAG00000015389) #26	AJUBA (ENSANAG00000032654) #27	HAUS4 (ENSANAG00000037413) #28	PRMT5 (ENSANAG00000035246) #29	ENSANAG00000031466 #30	REM2 (ENSANAG00000024097) #31	LRP10 (ENSANAG00000029303) #32	MMP14 (ENSANAG00000021316) #33	MRPL52 (ENSANAG00000037074) #34	SLC7A7 (ENSANAG00000036104) #35	OXA1L (ENSANAG00000034299) #36	ENSANAG00000014624 #37	ABHD4 (ENSANAG00000023988)
Tarsier	MODERN SPECIES	6127	NGDN (ENSTSYG00000009606) #8	MYH7 (ENSTSYG00000004246) #9	MYH6 (ENSTSYG00000010605) #10	CMTM5 (ENSTSYG00000006244) #11	IL25 (ENSTSYG00000006243)	EFS (ENSTSYG00000010826) #12	SLC22A17 (ENSTSYG00000032744) #13	BCL2L2 (ENSTSYG00000033996) #14	PPP1R3E (ENSTSYG00000004723)	HOMEZ (ENSTSYG00000026061) #16	RNF212B (ENSTSYG00000004710) #17	ENSTSYG00000027370	SLC7A8 (ENSTSYG00000013813) #18	CEBPE (ENSTSYG00000035051) #19	CIROP (ENSTSYG00000029727) #20	ACIN1 (ENSTSYG00000011584) #22	CDH24 (ENSTSYG00000026066) #23	PSMB5 (ENSTSYG00000029022) #25	CUNH14orf93 (ENSTSYG00000001536) #26	AJUBA (ENSTSYG00000005841) #27
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Mouse lemur	MODERN SPECIES	22	ZFHX2 (ENSMICG00000026323) #7	NGDN (ENSMICG00000010111) #8	MYH7 (ENSMICG00000042027) #9	CMTM5 (ENSMICG00000010037) #11	IL25 (ENSMICG00000010034)	EFS (ENSMICG00000010030) #12	SLC22A17 (ENSMICG00000010020) #13	PABPN1 (ENSMICG00000010002) #14	ENSMICG00000027510	ENSMICG00000012241	PPP1R3E (ENSMICG00000042784)	HOMEZ (ENSMICG00000009996) #16	RNF212B (ENSMICG00000044189) #17	SLC7A8 (ENSMICG00000002594) #18	CEBPE (ENSMICG00000034256) #19	ACIN1 (ENSMICG00000002575) #22	CDH24 (ENSMICG00000002564) #23	PSMB5 (ENSMICG00000035988) #25	C14orf93 (ENSMICG00000009205) #26	AJUBA (ENSMICG00000009193) #27	HAUS4 (ENSMICG00000030177) #28	PRMT5 (ENSMICG00000015023) #29	RBM23 (ENSMICG00000006364) #30	REM2 (ENSMICG00000047327) #31	LRP10 (ENSMICG00000006358) #32	MMP14 (ENSMICG00000006204) #33	MRPL52 (ENSMICG00000006201) #34	SLC7A7 (ENSMICG00000036164) #35	OXA1L (ENSMICG00000001403) #36	ENSMICG00000028761 #37	ABHD4 (ENSMICG00000012697)
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Coquerels sifaka	MODERN SPECIES	424	ZFHX2 (ENSPCOG00000025004) #7	NGDN (ENSPCOG00000027627) #8	MYH7 (ENSPCOG00000015019) #9	MYH6 (ENSPCOG00000014995) #10	CMTM5 (ENSPCOG00000005147) #11	IL25 (ENSPCOG00000025349)	EFS (ENSPCOG00000027493) #12	SLC22A17 (ENSPCOG00000027568) #13	PABPN1 (ENSPCOG00000028047) #14	PPP1R3E (ENSPCOG00000015686)	HOMEZ (ENSPCOG00000019744) #16	RNF212B (ENSPCOG00000017081) #17	SLC7A8 (ENSPCOG00000027947) #18	CEBPE (ENSPCOG00000019222) #19	CIROP (ENSPCOG00000024150) #20	ACIN1 (ENSPCOG00000002308) #22	CDH24 (ENSPCOG00000003143) #23	PSMB5 (ENSPCOG00000021862) #25	C14orf93 (ENSPCOG00000010379) #26	AJUBA (ENSPCOG00000016135) #27	HAUS4 (ENSPCOG00000016850) #28	PRMT5 (ENSPCOG00000017358) #29	RBM23 (ENSPCOG00000018564) #30	REM2 (ENSPCOG00000025110) #31	LRP10 (ENSPCOG00000020765) #32	MMP14 (ENSPCOG00000020895) #33	MRPL52 (ENSPCOG00000027612) #34	SLC7A7 (ENSPCOG00000015863) #35	OXA1L (ENSPCOG00000024151) #36	ENSPCOG00000012865 #37	ABHD4 (ENSPCOG00000000567)
Greater bamboo lemur	MODERN SPECIES	751				CMTM5 (ENSPSMG00000007515) #11	IL25 (ENSPSMG00000007471)	EFS (ENSPSMG00000007451) #12	SLC22A17 (ENSPSMG00000007388) #13	PABPN1 (ENSPSMG00000007334) #14	PPP1R3E (ENSPSMG00000007295)	HOMEZ (ENSPSMG00000007289) #16	ENSPSMG00000007284	SLC7A8 (ENSPSMG00000007241) #18	CEBPE (ENSPSMG00000007139) #19	CIROP (ENSPSMG00000007132) #20	C14orf119 (ENSPSMG00000007129) #21	ACIN1 (ENSPSMG00000006617) #22	CDH24 (ENSPSMG00000006370) #23	PSMB11 (ENSPSMG00000006305) #24	PSMB5 (ENSPSMG00000006294) #25	C14orf93 (ENSPSMG00000006267) #26	AJUBA (ENSPSMG00000006254) #27	HAUS4 (ENSPSMG00000006188) #28	PRMT5 (ENSPSMG00000005651) #29	RBM23 (ENSPSMG00000005248) #30	REM2 (ENSPSMG00000005112) #31	LRP10 (ENSPSMG00000005091) #32	MMP14 (ENSPSMG00000005056) #33	MRPL52 (ENSPSMG00000005045) #34	SLC7A7 (ENSPSMG00000005010) #35	OXA1L (ENSPSMG00000004934) #36	ENSPSMG00000004892 #37
Bushbaby	MODERN SPECIES	340	JPH4 (ENSOGAG00000025775)	AP1G2 (ENSOGAG00000008739)	THTPA (ENSOGAG00000008737)	ZFHX2 (ENSOGAG00000034396) #7	NGDN (ENSOGAG00000008735) #8	MYH7 (ENSOGAG00000008721) #9	ENSOGAG00000008716 #11	IL25 (ENSOGAG00000008714)	SLC22A17 (ENSOGAG00000032035) #13	PABPN1 (ENSOGAG00000008710) #14	BCL2L2 (ENSOGAG00000028961) #15	PPP1R3E (ENSOGAG00000030261)	HOMEZ (ENSOGAG00000032616) #16	SLC7A8 (ENSOGAG00000009274) #18	CEBPE (ENSOGAG00000001312) #19	ACIN1 (ENSOGAG00000012605) #22	CDH24 (ENSOGAG00000005114) #23	PSMB11 (ENSOGAG00000034070) #24	PSMB5 (ENSOGAG00000005107) #25	C14orf93 (ENSOGAG00000005106) #26	AJUBA (ENSOGAG00000034052) #27	HAUS4 (ENSOGAG00000000586) #28	PRMT5 (ENSOGAG00000005094) #29	RBM23 (ENSOGAG00000014794) #30	REM2 (ENSOGAG00000027026) #31	LRP10 (ENSOGAG00000005090) #32	MMP14 (ENSOGAG00000012736) #33	SLC7A7 (ENSOGAG00000000632) #35	OXA1L (ENSOGAG00000000631) #36	ENSOGAG00000024512 #37	OR6J1 (ENSOGAG00000006226)
Atlantogenata	ANCESTRAL SPECIES	55	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Xenarthra	ANCESTRAL SPECIES	10		ENSGT00940000159432.C #9	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708.a #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Sloth	MODERN SPECIES	327																ACIN1 (ENSCHOG00000006414) #22
Armadillo	MODERN SPECIES	3264	MYH7 (ENSDNOG00000018254) #9	ENSDNOG00000041659 #11	IL25 (ENSDNOG00000038281)	EFS (ENSDNOG00000017080) #12	SLC22A17 (ENSDNOG00000047865) #13	ENSDNOG00000023682 #14	ENSDNOG00000040864	BCL2L2 (ENSDNOG00000047570) #15	PPP1R3E (ENSDNOG00000024325)	HOMEZ (ENSDNOG00000040503) #16	RNF212B (ENSDNOG00000011627) #17	SLC7A8 (ENSDNOG00000040397) #18	CEBPE (ENSDNOG00000007024) #19	CIROP (ENSDNOG00000041362) #20	C14orf119 (ENSDNOG00000015765) #21	ACIN1 (ENSDNOG00000047667) #22	CDH24 (ENSDNOG00000030883) #23	PSMB11 (ENSDNOG00000048021) #24	PSMB5 (ENSDNOG00000045865) #25	C14orf93 (ENSDNOG00000048501) #26	AJUBA (ENSDNOG00000045223) #27	PRMT5 (ENSDNOG00000002572) #29	RBM23 (ENSDNOG00000032457) #30	REM2 (ENSDNOG00000024210) #31	LRP10 (ENSDNOG00000045291) #32	MMP14 (ENSDNOG00000008414) #33	MRPL52 (ENSDNOG00000032713) #34	SLC7A7 (ENSDNOG00000001129) #35	OXA1L (ENSDNOG00000001130) #36	ENSDNOG00000036263 #37	ENSDNOG00000043711 #37
Afrotheria	ANCESTRAL SPECIES	68	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Afrotheria_a	ANCESTRAL SPECIES	66	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841.jb #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B #37
Elephant	MODERN SPECIES	11	ZFHX2 (ENSLAFG00000020918) #7	NGDN (ENSLAFG00000013953) #8	MYH7 (ENSLAFG00000017000) #9	MYH6 (ENSLAFG00000016984) #10	IL25 (ENSLAFG00000028734)	EFS (ENSLAFG00000011162) #12	SLC22A17 (ENSLAFG00000028742) #13	ENSLAFG00000031227 #14	BCL2L2 (ENSLAFG00000010859) #15	PPP1R3E (ENSLAFG00000030077)	HOMEZ (ENSLAFG00000027417) #16	RNF212B (ENSLAFG00000022997) #17	SLC7A8 (ENSLAFG00000017607) #18	CEBPE (ENSLAFG00000031400) #19	C14orf119 (ENSLAFG00000031047) #21	ACIN1 (ENSLAFG00000003679) #22	CDH24 (ENSLAFG00000003672) #23	PSMB11 (ENSLAFG00000003671) #24	ENSLAFG00000015256 #25	C14orf93 (ENSLAFG00000006110) #26	AJUBA (ENSLAFG00000026749) #27	HAUS4 (ENSLAFG00000012956) #28	PRMT5 (ENSLAFG00000004859) #29	RBM23 (ENSLAFG00000018567) #30	REM2 (ENSLAFG00000002216) #31	LRP10 (ENSLAFG00000028518) #32	MMP14 (ENSLAFG00000002214) #33	MRPL52 (ENSLAFG00000004118) #34	SLC7A7 (ENSLAFG00000004114) #35	OXA1L (ENSLAFG00000026128) #36	ENSLAFG00000028204 #37
Hyrax	MODERN SPECIES	281																ACIN1 (ENSPCAG00000006599) #22	CDH24 (ENSPCAG00000006492) #23	PSMB11 (ENSPCAG00000006486) #24	PSMB5 (ENSPCAG00000006440) #25	C14orf93 (ENSPCAG00000006394) #26
Tenrec	MODERN SPECIES	416														CEBPE (ENSETEG00000000035) #19	C14orf119 (ENSETEG00000000034) #21	ACIN1 (ENSETEG00000000033) #22	PSMB5 (ENSETEG00000000031) #25
Marsupialia	ANCESTRAL SPECIES		ENSGT00840000132219	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.bb.a.b.a #37
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00840000132219	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.bb.a.b.a #37
Diprotodontia	ANCESTRAL SPECIES		ENSGT00500000044922 #8	ENSGT00840000132219	ENSGT00940000159432.C #9	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.bb.a.b.a #37
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00500000044922 #8	ENSGT00840000132219	ENSGT00940000159432.C #9	ENSGT00940000161867 #11	ENSGT00930000151068	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT01090000260003.a.b.b.a.a.b.b.b #15	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00940000160978 #27	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT01090000260011.B.bb.a.b.a #37
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	596																ENSVURG00010018811 #22
Common wonbat	MODERN SPECIES	598																ENSVURG00010018837 #22
Common wonbat	MODERN SPECIES	1107	ZFHX2 (ENSVURG00010022625) #7	NGDN (ENSVURG00010022622) #8	MYH7 (ENSVURG00010020864) #9	CMTM5 (ENSVURG00010020771) #11	IL25 (ENSVURG00010020764)	EFS (ENSVURG00010020760) #12	SLC22A17 (ENSVURG00010020757) #13	PABPN1 (ENSVURG00010020749) #14	BCL2L2 (ENSVURG00010020743) #15	PPP1R3E (ENSVURG00010020742)	HOMEZ (ENSVURG00010020740) #16	RNF212B (ENSVURG00010020736) #17	SLC7A8 (ENSVURG00010020731) #18	CEBPE (ENSVURG00010020725) #19	C14orf119 (ENSVURG00010020704) #21	ENSVURG00010020639 #22	ENSVURG00010020635 #23	ENSVURG00010020632 #24	PSMB5 (ENSVURG00010020631) #25	C14orf93 (ENSVURG00010020627) #26	AJUBA (ENSVURG00010020619) #27	HAUS4 (ENSVURG00010020603) #28	PRMT5 (ENSVURG00010020586) #29	RBM23 (ENSVURG00010020558) #30	REM2 (ENSVURG00010020549) #31	LRP10 (ENSVURG00010020541) #32	MMP14 (ENSVURG00010020534) #33	MRPL52 (ENSVURG00010020527) #34	SLC7A7 (ENSVURG00010020520) #35	OXA1L (ENSVURG00010020513) #36	ENSVURG00010020503 #37
koala	MODERN SPECIES		NGDN (ENSPCIG00000012961) #8	ENSPCIG00000027467	MYH7 (ENSPCIG00000013211) #9	ENSPCIG00000035211 #11	IL25 (ENSPCIG00000027747)	EFS (ENSPCIG00000027748) #12	SLC22A17 (ENSPCIG00000027749) #13	PABPN1 (ENSPCIG00000027751) #14	BCL2L2 (ENSPCIG00000027753) #15	PPP1R3E (ENSPCIG00000027755)	HOMEZ (ENSPCIG00000035868) #16	RNF212B (ENSPCIG00000027757) #17	SLC7A8 (ENSPCIG00000027759) #18	CEBPE (ENSPCIG00000027761) #19	C14orf119 (ENSPCIG00000027762) #21	ACIN1 (ENSPCIG00000027763) #22	CDH24 (ENSPCIG00000027765) #23	ENSPCIG00000027766 #24	PSMB5 (ENSPCIG00000033625) #25	C14orf93 (ENSPCIG00000027769) #26	AJUBA (ENSPCIG00000027770) #27	HAUS4 (ENSPCIG00000027771) #28	PRMT5 (ENSPCIG00000027772) #29	RBM23 (ENSPCIG00000027773) #30	REM2 (ENSPCIG00000027774) #31	LRP10 (ENSPCIG00000027775) #32	MMP14 (ENSPCIG00000027776) #33	MRPL52 (ENSPCIG00000027777) #34	SLC7A7 (ENSPCIG00000027778) #35	OXA1L (ENSPCIG00000027779) #36	ENSPCIG00000034713 #37
Wallaby	MODERN SPECIES	993																ACIN1 (ENSMEUG00000015219) #22
Tasmanian devil	MODERN SPECIES	1	THTPA (ENSSHAG00000030866)	ZFHX2 (ENSSHAG00000015490) #7	NGDN (ENSSHAG00000015351) #8	MYH7 (ENSSHAG00000015126) #9	MYH6 (ENSSHAG00000015011) #10	ENSSHAG00000014965 #11	ENSSHAG00000026745	EFS (ENSSHAG00000014878) #12	ENSSHAG00000021053 #13	PABPN1 (ENSSHAG00000023208) #14	HOMEZ (ENSSHAG00000031837) #16	RNF212B (ENSSHAG00000014514) #17	SLC7A8 (ENSSHAG00000014184) #18	CEBPE (ENSSHAG00000013989) #19	C14orf119 (ENSSHAG00000029308) #21	ACIN1 (ENSSHAG00000013673) #22	CDH24 (ENSSHAG00000013627) #23	PSMB11 (ENSSHAG00000024614) #24	PSMB5 (ENSSHAG00000013548) #25	C14orf93 (ENSSHAG00000013361) #26	HAUS4 (ENSSHAG00000031746) #28	AJUBA (ENSSHAG00000013113) #27	PRMT5 (ENSSHAG00000012999) #29	RBM23 (ENSSHAG00000012932) #30	REM2 (ENSSHAG00000012846) #31	LRP10 (ENSSHAG00000012773) #32	MMP14 (ENSSHAG00000012576) #33	ENSSHAG00000029770 #34	SLC7A7 (ENSSHAG00000012222) #35	OXA1L (ENSSHAG00000012179) #36	ENSSHAG00000020622
Opossum	MODERN SPECIES		AP1G2 (ENSMODG00000003822)	THTPA (ENSMODG00000003828)	ZFHX2 (ENSMODG00000004244) #7	NGDN (ENSMODG00000004257) #8	MYH6 (ENSMODG00000004422) #10	ENSMODG00000004428 #11	ENSMODG00000004432	EFS (ENSMODG00000004496) #12	SLC22A17 (ENSMODG00000004528) #13	PABPN1 (ENSMODG00000004535) #14	PPP1R3E (ENSMODG00000004543)	HOMEZ (ENSMODG00000024443) #16	RNF212B (ENSMODG00000004558) #17	CEBPE (ENSMODG00000004586) #19	C14orf119 (ENSMODG00000004611) #21	ACIN1 (ENSMODG00000005083) #22	CDH24 (ENSMODG00000005152) #23	PSMB11 (ENSMODG00000024444) #24	PSMB5 (ENSMODG00000005164) #25	C14orf93 (ENSMODG00000005171) #26	HAUS4 (ENSMODG00000005185) #28	AJUBA (ENSMODG00000034930) #27	PRMT5 (ENSMODG00000005204) #29	RBM23 (ENSMODG00000024448) #30	REM2 (ENSMODG00000005212) #31	LRP10 (ENSMODG00000005233) #32	MMP14 (ENSMODG00000005279) #33	ENSMODG00000041569 #34	ENSMODG00000005329 #35	OXA1L (ENSMODG00000005347) #36	ENSMODG00000005352
Platypus	DUPLICATION
Platypus	MODERN SPECIES	4	MYH7 (ENSOANG00000005729) #9	MYH6 (ENSOANG00000002875) #10	CMTM5 (ENSOANG00000043819) #11	ENSOANG00000043709	EFS (ENSOANG00000048493) #12	SLC22A17 (ENSOANG00000043320) #13	PABPN1 (ENSOANG00000009218) #14	BCL2L2 (ENSOANG00000009217) #15	PPP1R3E (ENSOANG00000048686)	HOMEZ (ENSOANG00000043892) #16	ENSOANG00000039401 #17	SLC7A8 (ENSOANG00000007644) #18	CEBPE (ENSOANG00000007645) #19	C14orf119 (ENSOANG00000009437) #21	ENSOANG00000009436 #22	ENSOANG00000047420 #22	CDH24 (ENSOANG00000041564) #23	PSMB11 (ENSOANG00000004543) #24	PSMB5 (ENSOANG00000004542) #25	C14orf93 (ENSOANG00000010719) #26	ENSOANG00000010720 #27	HAUS4 (ENSOANG00000010721) #28	PRMT5 (ENSOANG00000008909) #29	RBM23 (ENSOANG00000038905) #30	REM2 (ENSOANG00000003911) #31	LRP10 (ENSOANG00000003912) #32	MMP14 (ENSOANG00000003915) #33	ENSOANG00000046741	SLC7A7 (ENSOANG00000010722) #35	OXA1L (ENSOANG00000010724) #36	ABHD4 (ENSOANG00000010726)
Platypus	MODERN SPECIES	4	NGDN (ENSOANG00000013060) #8	MYH7 (ENSOANG00000005729) #9	MYH6 (ENSOANG00000002875) #10	CMTM5 (ENSOANG00000043819) #11	ENSOANG00000043709	EFS (ENSOANG00000048493) #12	SLC22A17 (ENSOANG00000043320) #13	PABPN1 (ENSOANG00000009218) #14	BCL2L2 (ENSOANG00000009217) #15	PPP1R3E (ENSOANG00000048686)	HOMEZ (ENSOANG00000043892) #16	ENSOANG00000039401 #17	SLC7A8 (ENSOANG00000007644) #18	CEBPE (ENSOANG00000007645) #19	C14orf119 (ENSOANG00000009437) #21	ENSOANG00000009436 #22	ENSOANG00000047420 #22	CDH24 (ENSOANG00000041564) #23	PSMB11 (ENSOANG00000004543) #24	PSMB5 (ENSOANG00000004542) #25	C14orf93 (ENSOANG00000010719) #26	ENSOANG00000010720 #27	HAUS4 (ENSOANG00000010721) #28	PRMT5 (ENSOANG00000008909) #29	RBM23 (ENSOANG00000038905) #30	REM2 (ENSOANG00000003911) #31	LRP10 (ENSOANG00000003912) #32	MMP14 (ENSOANG00000003915) #33	ENSOANG00000046741	SLC7A7 (ENSOANG00000010722) #35	OXA1L (ENSOANG00000010724) #36
Sauria	ANCESTRAL SPECIES	14	ENSGT00390000004738	ENSGT00390000013091	ENSGT00390000017224	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000011666	ENSGT00990000204256	ENSGT00940000164357	ENSGT00940000161577	ENSGT00950000182913.A.b.b	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000157517	ENSGT00940000158070	ENSGT00940000160204
Archelosauria	ANCESTRAL SPECIES	35	ENSGT00940000160537 #7	ENSGT00390000005996	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00840000132219	ENSGT00940000154805.b.g #10	ENSGT00940000167286	ENSGT00950000183008.a.a.b #12	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00940000162793.b	ENSGT00940000163076	ENSGT00940000162793.a
Archosauria	ANCESTRAL SPECIES	229															ENSGT00940000158278 #18	ENSGT00710000106790 #22
Aves	ANCESTRAL SPECIES	219															ENSGT00940000158278 #18	ENSGT00710000106790 #22
Neognathae	ANCESTRAL SPECIES	52											ENSGT00950000183098.b.a.a	ENSGT00530000063693.a	ENSGT00720000108873	ENSGT00390000001912.e	ENSGT00940000158278 #18	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00940000162546 #30	ENSGT00390000001141 #29	ENSGT00390000014634 #28	ENSGT00940000154888	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00940000153402	ENSGT00940000153744.B	ENSGT00530000063540.b	ENSGT00390000003680.a
Galloanserae	ANCESTRAL SPECIES	72													ENSGT00950000183098.b.a.a	ENSGT00720000108873	ENSGT00390000001912.e	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00390000001141 #29	ENSGT00390000014634 #28
Phasianidae	ANCESTRAL SPECIES	50													ENSGT00950000183098.b.a.a	ENSGT00720000108873	ENSGT00390000001912.e	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00390000001141 #29	ENSGT00390000014634 #28
Phasianidae_b	ANCESTRAL SPECIES	57											ENSGT01050000244936.d.i.a.a	ENSGT00940000161491.d.w.a.e	ENSGT00950000183098.b.a.a	ENSGT00720000108873	ENSGT00390000001912.e	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00390000001141 #29	ENSGT00390000014634 #28	ENSGT00530000063506.B #36	ENSGT00530000064112.b.b
Chicken	MODERN SPECIES	28	ENSGALG00010003730	ENSGALG00010003530	ENSGALG00010003520	ENSGALG00010003736	ENSGALG00010003745	ENSGALG00010003757	ENSGALG00010003683	ENSGALG00010003777	ENSGALG00010003782	ENSGALG00010003785	ENSGALG00010003794	PSME1 (ENSGALG00010003804)	ENSGALG00010003835	PCK2 (ENSGALG00010003862)	ENSGALG00010003871 #14	ENSGALG00010003882 #22	ENSGALG00010003902 #8	PSMB5 (ENSGALG00010003913) #25	ENSGALG00010003928	ENSGALG00010003937 #33	ENSGALG00010004063	PRMT5 (ENSGALG00010003985) #29	ENSGALG00010003993 #36	ENSGALG00010004000	NEDD8 (ENSGALG00010004034)	ENSGALG00010004046	ENSGALG00010004057
Neognathae_b	ANCESTRAL SPECIES	57															ENSGT00940000158278 #18	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00940000162546 #30	ENSGT00390000001141 #29	ENSGT00530000063506.B #36	ENSGT00530000064112.b.b	ENSGT00550000075074	ENSGT00940000155856	ENSGT01050000244939.a.a.b.b	ENSGT00550000075121	ENSGT00390000004964
Passeriformes	ANCESTRAL SPECIES	65														ENSGT00720000108873	ENSGT00940000158278 #18	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00940000162546 #30	ENSGT00390000001141 #29	ENSGT00530000063506.B #36	ENSGT00530000064112.b.b	ENSGT00550000075074	ENSGT00940000155856	ENSGT01050000244939.a.a.b.b	ENSGT00550000075121
Passeriformes_d	ANCESTRAL SPECIES	60														ENSGT00720000108873	ENSGT00940000158278 #18	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00940000162546 #30	ENSGT00390000001141 #29	ENSGT00530000063506.B #36	ENSGT00530000064112.b.b	ENSGT00550000075074	ENSGT00940000155856	ENSGT01050000244939.a.a.b.b	ENSGT00550000075121
Passeriformes_g	ANCESTRAL SPECIES	73														ENSGT00720000108873	ENSGT00940000158278 #18	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00940000162546 #30	ENSGT00390000001141 #29	ENSGT00530000063506.B #36	ENSGT00530000064112.b.b	ENSGT00550000075074	ENSGT00940000155856	ENSGT01050000244939.a.a.b.b	ENSGT00550000075121
Passeroidea	ANCESTRAL SPECIES	77														ENSGT00720000108873	ENSGT00940000158278 #18	ENSGT00710000106790 #22	ENSGT00500000044922 #8	ENSGT00940000162546 #30	ENSGT00390000001141 #29	ENSGT00530000063506.B #36	ENSGT00530000064112.b.b	ENSGT00550000075074	ENSGT00940000155856	ENSGT01050000244939.a.a.b.b	ENSGT00550000075121
Zebra finch	MODERN SPECIES	86	NEDD8 (ENSTGUG00000026591)	ENSTGUG00000026075	ENSTGUG00000020942	ENSTGUG00000029640 #36	ENSTGUG00000027681 #33	ENSTGUG00000019974 #29	ENSTGUG00000029759	ENSTGUG00000023653	ENSTGUG00000021783	ENSTGUG00000021104 #25	ENSTGUG00000021471	ENSTGUG00000029343	ENSTGUG00000026620	ENSTGUG00000026793 #14	ENSTGUG00000024309 #18	ENSTGUG00000023490 #22	ENSTGUG00000027240 #8	ENSTGUG00000024582	ENSTGUG00000020706	ENSTGUG00000021473 #30	ENSTGUG00000027403	ENSTGUG00000023372	METTL3 (ENSTGUG00000021813)	ENSTGUG00000021612	ENSTGUG00000019030	CHD8 (ENSTGUG00000027920)	SUPT16H (ENSTGUG00000020996)	ENSTGUG00000028653	TTC5 (ENSTGUG00000025638)	OSGEP (ENSTGUG00000014301)	APEX1 (ENSTGUG00000020579)
Cryptodira	ANCESTRAL SPECIES	14	ENSGT00390000016908	ENSGT00390000004738	ENSGT00390000013091	ENSGT00390000017224	ENSGT00940000159432.C #9	ENSGT00940000167286	ENSGT00940000154805.b.g #10	ENSGT00950000183008.a.a.b #12	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000164357	ENSGT00390000011666	ENSGT00940000161577	ENSGT00950000182913.A.b.b	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000157517
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	13	ENSGT00940000159646	ENSGT00390000016908	ENSGT00390000004738	ENSGT00390000013091	ENSGT00390000017224	ENSGT00940000167286	ENSGT00940000154805.b.g #10	ENSGT00950000183008.a.a.b #12	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.q #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062.e #31	ENSGT00390000011666	ENSGT00940000161577	ENSGT00950000182913.A.b.b	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000157517	ENSGT00940000158070
Emydidae	ANCESTRAL SPECIES	47	ENSGT00940000161531	ENSGT00390000011067.B	ENSGT00940000159646	ENSGT00390000016908	ENSGT00390000004738	ENSGT00390000013091	ENSGT00390000017224	ENSGT00950000183008.a.a.b #12	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.q #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062.e #31	ENSGT00940000164357	ENSGT00990000204256	ENSGT00940000161577	ENSGT00950000182913.A.b.b	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000157517
painted turtle	MODERN SPECIES	909	ENSCPBG00000025900 #7	THTPA (ENSCPBG00000025901)	NGDN (ENSCPBG00000025903) #8	ENSCPBG00000025930 #9	ENSCPBG00000026040 #9	ENSCPBG00000026048	ENSCPBG00000026052	EFS (ENSCPBG00000026055) #12	PABPN1 (ENSCPBG00000026060) #14	PPP1R3E (ENSCPBG00000026062)	HOMEZ (ENSCPBG00000026064) #16	ENSCPBG00000026066 #17	SLC7A8 (ENSCPBG00000026070) #18	CEBPE (ENSCPBG00000026072) #19	C14orf119 (ENSCPBG00000026074) #21	ACIN1 (ENSCPBG00000026078) #22	CDH24 (ENSCPBG00000026082) #23	PSMB11 (ENSCPBG00000026084) #24	PSMB5 (ENSCPBG00000026086) #25	C14orf93 (ENSCPBG00000026087) #26	HAUS4 (ENSCPBG00000026090) #28	PRMT5 (ENSCPBG00000026091) #29	RBM23 (ENSCPBG00000026096) #30	REM2 (ENSCPBG00000026102) #31	MMP14 (ENSCPBG00000026105) #33	MRPL52 (ENSCPBG00000026107) #34	SLC7A7 (ENSCPBG00000026108) #35	ENSCPBG00000026110	ENSCPBG00000026112	ENSCPBG00000026114	ENSCPBG00000026120
Three-toed box turtle	MODERN SPECIES	2217														PPP1R3E (ENSTMTG00000013587)	HOMEZ (ENSTMTG00000013581) #16	ENSTMTG00000013569 #22
Testudinidae	ANCESTRAL SPECIES	17	ENSGT00390000011067.B	ENSGT00940000159646	ENSGT01100000266524	ENSGT00390000004738	ENSGT00390000013091	ENSGT00390000017224	ENSGT00940000167286	ENSGT00940000154805.b.g #10	ENSGT00950000183008.a.a.b #12	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00710000106790.q #22	ENSGT00940000159567 #23	ENSGT00940000157841 #25	ENSGT00390000011666	ENSGT00940000161577	ENSGT00950000182913.A.b.b	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000157517	ENSGT00940000158070	ENSGT00940000160204	ENSGT00390000012054.b.ab.a	ENSGT00390000012054.b.`b	ENSGT00390000009212	ENSGT00940000155218.B	ENSGT00390000005410
Abingdon island giant tortoise	MODERN SPECIES	2240					ENSCABG00000001658 #7	MYH7 (ENSCABG00000001645) #9	ENSCABG00000001642	MYH6 (ENSCABG00000001637) #10	ENSCABG00000001634 #12	PABPN1 (ENSCABG00000001632) #14	PPP1R3E (ENSCABG00000001630)	HOMEZ (ENSCABG00000001627) #16	RNF212B (ENSCABG00000001624) #17	SLC7A8 (ENSCABG00000001619) #18	CEBPE (ENSCABG00000001617) #19	ACIN1 (ENSCABG00000001598) #22	CDH24 (ENSCABG00000001592) #23	ENSCABG00000001591	PSMB5 (ENSCABG00000001588) #25
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00710000106790.r #22
Emydidae	ANCESTRAL SPECIES																	ENSGT00710000106790.r #22
Three-toed box turtle	MODERN SPECIES	1489																ENSTMTG00000018154 #22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00710000106790.r #22
Goode s thornscrub tortoise	MODERN SPECIES	141																ACIN1 (ENSGEVG00005019027) #22
Lepidosauria	ANCESTRAL SPECIES	55	ENSGT00940000162272	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000167286	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00940000163076	ENSGT00940000161491.d.w.a
Episquamata	DUPLICATION
Episquamata	ANCESTRAL SPECIES	20	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000167286	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00710000106790.t #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00960000190008
Toxicofera	ANCESTRAL SPECIES	30	ENSGT00940000158919	ENSGT00940000162272	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00710000106790.t #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00960000190008
Elapidae	ANCESTRAL SPECIES	30	ENSGT00940000157990	ENSGT00940000158919	ENSGT00940000162272.a	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00960000191070	ENSGT00710000106790.t.a #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.e #30	ENSGT00940000160062.c #31	ENSGT00940000160783 #32	ENSGT00940000157808.c #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.v #36
Indian cobra	MODERN SPECIES	35																ENSNNAG00000011672 #22	ENSNNAG00000011689	ENSNNAG00000011727 #22
Elapidae_a	ANCESTRAL SPECIES	75	ENSGT00940000158919	ENSGT00940000162272.a	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.w #14	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00960000191070	ENSGT00710000106790.t.a #22	ENSGT00940000159567.c #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.e #30	ENSGT00940000160062.c #31	ENSGT00940000160783 #32	ENSGT00940000157808.c #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.v #36
Acanthophiinae	ANCESTRAL SPECIES	73	ENSGT00940000158919	ENSGT00940000162272.a	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.w #14	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00960000191070	ENSGT00710000106790.t.a #22	ENSGT00940000159567.c #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.e #30	ENSGT00940000160062.c #31	ENSGT00940000160783 #32	ENSGT00940000157808.c #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.v #36
Mainland tiger snake	MODERN SPECIES	558															ENSNSUG00000017312 #21	ENSNSUG00000017311 #22
Eastern brown snake	MODERN SPECIES	168															ENSPTXG00000011299	ENSPTXG00000011298 #22	ENSPTXG00000011297	ENSPTXG00000011277 #22	ENSPTXG00000011271
Blue-lipped sea krait	MODERN SPECIES	7346														CEBPE (ENSLLTG00000016181) #19	C14orf119 (ENSLLTG00000016183) #21	ENSLLTG00000016187 #22
Laterata	ANCESTRAL SPECIES	26	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000167286	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00940000164357	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00710000106790.t #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.s.a #36	ENSGT00940000163371.b.b
Argentine black and white tegu	MODERN SPECIES	38	ZFHX2 (ENSSMRG00000004111) #7	NGDN (ENSSMRG00000004116) #8	ENSSMRG00000004120 #9	ENSSMRG00000004127	ENSSMRG00000004427	CMTM5 (ENSSMRG00000004432) #11	EFS (ENSSMRG00000004437) #12	SLC22A17 (ENSSMRG00000004440) #13	PABPN1 (ENSSMRG00000004449) #14	PPP1R3E (ENSSMRG00000004451)	ENSSMRG00000004462	HOMEZ (ENSSMRG00000004464) #16	SLC7A8 (ENSSMRG00000004465) #18	CEBPE (ENSSMRG00000004479) #19	C14orf119 (ENSSMRG00000004489) #21	ACIN1 (ENSSMRG00000004490) #22	CDH24 (ENSSMRG00000004516) #23	PSMB11 (ENSSMRG00000004521) #24	PSMB5 (ENSSMRG00000004524) #25	HAUS4 (ENSSMRG00000004526) #28	PRMT5 (ENSSMRG00000004534) #29	RBM23 (ENSSMRG00000004536) #30	REM2 (ENSSMRG00000004544) #31	LRP10 (ENSSMRG00000004554) #32	MMP14 (ENSSMRG00000004558) #33	MRPL52 (ENSSMRG00000004591) #34	SLC7A7 (ENSSMRG00000004602) #35	ENSSMRG00000004610 #36	ENSSMRG00000004618 #36	ENSSMRG00000004621 #36	ENSSMRG00000004623
Episquamata	ANCESTRAL SPECIES	20	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000167286	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00710000106790.t #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00960000190008	ENSGT00940000163371.b.b
Laterata	ANCESTRAL SPECIES	26	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000167286	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606 #14	ENSGT00940000161906	ENSGT00940000164357	ENSGT00950000182893.a.b #16	ENSGT00740000115581.e #17	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00710000106790.t #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.s.a #36	ENSGT00940000163371.b.b	ENSGT01000000219505
Common wall lizard	MODERN SPECIES	4	MYH7 (ENSPMRG00000020525) #9	CMTM5 (ENSPMRG00000020512) #11	ENSPMRG00000020508	ENSPMRG00000020504	ENSPMRG00000020501	EFS (ENSPMRG00000020488) #12	SLC22A17 (ENSPMRG00000020485) #13	PABPN1 (ENSPMRG00000020477) #14	PPP1R3E (ENSPMRG00000020471)	ENSPMRG00000020467	HOMEZ (ENSPMRG00000020463) #16	RNF212B (ENSPMRG00000020454) #17	SLC7A8 (ENSPMRG00000020448) #18	CEBPE (ENSPMRG00000020441) #19	C14orf119 (ENSPMRG00000020439) #21	ACIN1 (ENSPMRG00000021068) #22	CDH24 (ENSPMRG00000021049) #23	PSMB11 (ENSPMRG00000021034) #24	PSMB5 (ENSPMRG00000021025) #25	C14orf93 (ENSPMRG00000021018) #26	HAUS4 (ENSPMRG00000021006) #28	PRMT5 (ENSPMRG00000020981) #29	REM2 (ENSPMRG00000020969) #31	LRP10 (ENSPMRG00000020961) #32	MMP14 (ENSPMRG00000020952) #33	MRPL52 (ENSPMRG00000020948) #34	SLC7A7 (ENSPMRG00000020939) #35	OXA1L (ENSPMRG00000020928) #36	ENSPMRG00000020896	ENSPMRG00000020889	ENSPMRG00000020885
Toxicofera	ANCESTRAL SPECIES	30	ENSGT00940000162272	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000159432.C #9	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00710000106790.t #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B #36	ENSGT00960000190008	ENSGT00940000163371.b.b
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	30	ENSGT00940000162272.a	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00960000191070	ENSGT00710000106790.t.a #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.e #30	ENSGT00940000160062.c #31	ENSGT00940000160783 #32	ENSGT00940000157808.c #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.v #36	ENSGT00950000182812.H	ENSGT00530000063506.B.u #36
Elapidae_a	ANCESTRAL SPECIES	75	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.w #14	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00960000191070	ENSGT00710000106790.t.a #22	ENSGT00940000159567.c #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.e #30	ENSGT00940000160062.c #31	ENSGT00940000160783 #32	ENSGT00940000157808.c #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.v #36	ENSGT00950000182812.H	ENSGT00530000063506.B.u #36
Acanthophiinae	ANCESTRAL SPECIES	73	ENSGT00950000182838.B.a.b	ENSGT00390000005996	ENSGT00940000160537 #7	ENSGT00500000044922 #8	ENSGT00940000154805.b.g #10	ENSGT00940000161867 #11	ENSGT00950000183008.a.a.b #12	ENSGT00940000160959 #13	ENSGT00940000154606.w #14	ENSGT00950000182893.a.b #16	ENSGT00940000158278 #18	ENSGT00940000161681 #19	ENSGT00390000007438 #21	ENSGT00710000106790.s #22	ENSGT00960000191070	ENSGT00710000106790.t.a #22	ENSGT00940000159567.c #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546.e #30	ENSGT00940000160062.c #31	ENSGT00940000160783 #32	ENSGT00940000157808.c #33	ENSGT00390000005763 #34	ENSGT00940000160134 #35	ENSGT00530000063506.B.v #36	ENSGT00530000063506.B.u #36	ENSGT00940000162793.b.b
Mainland tiger snake	MODERN SPECIES	190	ENSNSUG00000016943	AP1G2 (ENSNSUG00000016917)	THTPA (ENSNSUG00000016916)	ZFHX2 (ENSNSUG00000016915) #7	NGDN (ENSNSUG00000016912) #8	ENSNSUG00000014886 ##9	CMTM5 (ENSNSUG00000014865) #11	EFS (ENSNSUG00000014864) #12	ENSNSUG00000014863 #13	ENSNSUG00000014862 #14	PPP1R3E (ENSNSUG00000014861)	ENSNSUG00000014860	HOMEZ (ENSNSUG00000014859) #16	SLC7A8 (ENSNSUG00000014858) #18	ENSNSUG00000014857	ENSNSUG00000014856 #22	CDH24 (ENSNSUG00000014849) #23	PSMB11 (ENSNSUG00000014848) #24	PSMB5 (ENSNSUG00000014847) #25	C14orf93 (ENSNSUG00000014846) #26	ENSNSUG00000014845 #28	PRMT5 (ENSNSUG00000014844) #29	ENSNSUG00000014843 #30	REM2 (ENSNSUG00000014840) #31	ENSNSUG00000014837	ENSNSUG00000014834 #33	MRPL52 (ENSNSUG00000014833) #34	SLC7A7 (ENSNSUG00000014832) #35	ENSNSUG00000014831 #36	ENSNSUG00000014830 #36
Indian cobra	MODERN SPECIES	337	CHMP4A (ENSNNAG00000006999)	PSME2 (ENSNNAG00000006979)	EMC9 (ENSNNAG00000006963)	PSME1 (ENSNNAG00000006938)	FITM1 (ENSNNAG00000006927)	DCAF11 (ENSNNAG00000006739)	PCK2 (ENSNNAG00000006681)	ENSNNAG00000006665	ENSNNAG00000006628	MYH6 (ENSNNAG00000006005) #10	PPP1R3E (ENSNNAG00000005883)	ENSNNAG00000005862	HOMEZ (ENSNNAG00000005837) #16	SLC7A8 (ENSNNAG00000005798) #18	ENSNNAG00000005779	ENSNNAG00000005688 #22	CDH24 (ENSNNAG00000005217) #23	PSMB11 (ENSNNAG00000005160) #24	PSMB5 (ENSNNAG00000005153) #25	C14orf93 (ENSNNAG00000005047) #26	ENSNNAG00000005017 #28	PRMT5 (ENSNNAG00000004564) #29	ENSNNAG00000004410 #30	REM2 (ENSNNAG00000004386) #31	ENSNNAG00000004373	MMP14 (ENSNNAG00000004351) #33	MRPL52 (ENSNNAG00000004331) #34	SLC7A7 (ENSNNAG00000004285) #35	ENSNNAG00000004257 #36	ENSNNAG00000004245	ENSNNAG00000004208 #36
Elapidae	ANCESTRAL SPECIES																	ENSGT00710000106790.t.b #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00710000106790.t.b #22
Acanthophiinae	DUPLICATION
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00710000106790.t.b.a #22
Eastern brown snake	MODERN SPECIES	168													ENSPTXG00000011299	ENSPTXG00000011298 #22	ENSPTXG00000011297	ENSPTXG00000011277 #22	ENSPTXG00000011271
Mainland tiger snake	MODERN SPECIES	1393																ENSNSUG00000012486 #22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00710000106790.t.b.b #22
Mainland tiger snake	MODERN SPECIES	922																ENSNSUG00000006798 #22
Indian cobra	MODERN SPECIES	35														ENSNNAG00000011672 #22	ENSNNAG00000011689	ENSNNAG00000011727 #22
Lizard	MODERN SPECIES	1375											ENSACAG00000007380	HOMEZ (ENSACAG00000007379) #16	SLC7A8 (ENSACAG00000007300) #18	CEBPE (ENSACAG00000007268) #19	C14orf119 (ENSACAG00000007265) #21	ACIN1 (ENSACAG00000040468) #22	CDH24 (ENSACAG00000006980) #23	ENSACAG00000042460
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1221	ENSSPUG00000018089	ENSSPUG00000018095	ENSSPUG00000018101	MYH6 (ENSSPUG00000018110) #10	ENSSPUG00000018123	MYH7 (ENSSPUG00000018133) #9	ZFHX2 (ENSSPUG00000018173) #7	EFS (ENSSPUG00000018195) #12	SLC22A17 (ENSSPUG00000018222) #13	PABPN1 (ENSSPUG00000018308) #14	PPP1R3E (ENSSPUG00000018315)	HOMEZ (ENSSPUG00000000035) #16	SLC7A8 (ENSSPUG00000000049) #18	CEBPE (ENSSPUG00000000097) #19	ENSSPUG00000000098 #22	ENSSPUG00000000171 #22	ENSSPUG00000000318 #26	PSMB5 (ENSSPUG00000000355) #25	PSMB11 (ENSSPUG00000000359) #24	ENSSPUG00000000368 #26	HAUS4 (ENSSPUG00000000409) #28	PRMT5 (ENSSPUG00000000421) #29	RBM23 (ENSSPUG00000000489) #30	REM2 (ENSSPUG00000000505) #31	LRP10 (ENSSPUG00000000532) #32	MMP14 (ENSSPUG00000000573) #33	MRPL52 (ENSSPUG00000000605) #34	ENSSPUG00000000611 #35	ENSSPUG00000000614 #35	OXA1L (ENSSPUG00000000616) #36	ENSSPUG00000000627
tuatara	MODERN SPECIES	1221	ENSSPUG00000018085	ENSSPUG00000018089	ENSSPUG00000018095	ENSSPUG00000018101	MYH6 (ENSSPUG00000018110) #10	ENSSPUG00000018123	MYH7 (ENSSPUG00000018133) #9	ZFHX2 (ENSSPUG00000018173) #7	EFS (ENSSPUG00000018195) #12	SLC22A17 (ENSSPUG00000018222) #13	PABPN1 (ENSSPUG00000018308) #14	PPP1R3E (ENSSPUG00000018315)	HOMEZ (ENSSPUG00000000035) #16	SLC7A8 (ENSSPUG00000000049) #18	CEBPE (ENSSPUG00000000097) #19	ENSSPUG00000000098 #22	ENSSPUG00000000171 #22	ENSSPUG00000000318 #26	PSMB5 (ENSSPUG00000000355) #25	PSMB11 (ENSSPUG00000000359) #24	ENSSPUG00000000368 #26	HAUS4 (ENSSPUG00000000409) #28	PRMT5 (ENSSPUG00000000421) #29	RBM23 (ENSSPUG00000000489) #30	REM2 (ENSSPUG00000000505) #31	LRP10 (ENSSPUG00000000532) #32	MMP14 (ENSSPUG00000000573) #33	MRPL52 (ENSSPUG00000000605) #34	ENSSPUG00000000611 #35	ENSSPUG00000000614 #35	OXA1L (ENSSPUG00000000616) #36
Anura	ANCESTRAL SPECIES	42	ENSGT00390000003324	ENSGT00390000016277.b	ENSGT01030000234536.b.a.b.b.a	ENSGT00940000161491.d.a.a	ENSGT00940000163371.b.b.f	ENSGT00940000161491.d.a.b	ENSGT00940000161491.c.b	ENSGT00940000162793	ENSGT00940000161491.d.b	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000162747	ENSGT00940000161068	ENSGT00940000163573 #20	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000159567 #23	ENSGT00940000162200 #24	ENSGT00940000157841 #25	ENSGT00390000012708 #26	ENSGT00390000014634 #28	ENSGT00390000001141 #29	ENSGT00940000162546 #30	ENSGT00940000160062 #31	ENSGT00940000160783 #32	ENSGT00940000157808 #33	ENSGT00390000005763 #34	ENSGT00940000157990	ENSGT00940000162272	ENSGT00950000182838.B.a.b	ENSGT00940000160537 #7
Frog	MODERN SPECIES		ENSXETG00000044751	ENSXETG00000045463	ENSXETG00000041202	ENSXETG00000046011	ighx (ENSXETG00000004795)	ENSXETG00000046336	ENSXETG00000041055	ENSXETG00000037671	ENSXETG00000040153	ENSXETG00000045859	oxa1l (ENSXETG00000022127) #36	slc7a7 (ENSXETG00000022128) #35	nrl (ENSXETG00000022130)	CIROP (ENSXETG00000047679) #20	c14orf119 (ENSXETG00000044771) #21	acin1 (ENSXETG00000025376) #22	cdh24 (ENSXETG00000022648) #23	psmb11 (ENSXETG00000022638) #24	psmb5 (ENSXETG00000026351) #25	ENSXETG00000042909	C14orf93 (ENSXETG00000022632) #26	haus4 (ENSXETG00000022630) #28	prmt5 (ENSXETG00000022626) #29	rbm23 (ENSXETG00000022623) #30	ENSXETG00000041564	rem2 (ENSXETG00000013757) #31	mmp14 (ENSXETG00000022669) #33	mrpl52 (ENSXETG00000033124) #34	ENSXETG00000047505	ENSXETG00000046219	carmil3 (ENSXETG00000022577)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000006492	ENSLLEG00000006506	ENSLLEG00000006528	ENSLLEG00000006542	ENSLLEG00000006562	ENSLLEG00000006690	ENSLLEG00000006818	ENSLLEG00000006965	ENSLLEG00000007364	ENSLLEG00000007901	OXA1L (ENSLLEG00000007932) #36	SLC7A7 (ENSLLEG00000007982) #35	ENSLLEG00000008062	ENSLLEG00000008084	C14orf119 (ENSLLEG00000008099) #21	ACIN1 (ENSLLEG00000008135) #22	CDH24 (ENSLLEG00000008291) #23	PSMB11 (ENSLLEG00000008480) #24	ENSLLEG00000008534 #25	ENSLLEG00000008565	C14orf93 (ENSLLEG00000008588) #26	HAUS4 (ENSLLEG00000008633) #28	PRMT5 (ENSLLEG00000008797) #29	RBM23 (ENSLLEG00000010142) #30	ENSLLEG00000010227	REM2 (ENSLLEG00000010247) #31	LRP10 (ENSLLEG00000010294) #32	ENSLLEG00000010402	MMP14 (ENSLLEG00000010435) #33	MRPL52 (ENSLLEG00000010559) #34	ENSLLEG00000010602
Coelacanth	MODERN SPECIES	430						ENSLACG00000017126 #13	ENSLACG00000017090	MMP14 (ENSLACG00000016983) #33	LRP10 (ENSLACG00000016831) #32	REM2 (ENSLACG00000016785) #31	ENSLACG00000016576	ENSLACG00000016318	ENSLACG00000016005	ENSLACG00000015821 #20	C14orf119 (ENSLACG00000015778) #21	ACIN1 (ENSLACG00000015560) #22	ENSLACG00000015456	C14orf93 (ENSLACG00000015300) #26	psmb5 (ENSLACG00000015194) #25	ENSLACG00000015163 #24	ENSLACG00000015147 #24	CDH24 (ENSLACG00000014676) #23	AP1G2 (ENSLACG00000013220)	MYH6 (ENSLACG00000012789) #10	MYH7 (ENSLACG00000012187) #9	PRMT5 (ENSLACG00000011043) #29	ENSLACG00000010809 #27	ENSLACG00000010344	KMT5C (ENSLACG00000009701)	ENSLACG00000022497	BRSK1 (ENSLACG00000007911)
Actinopterygii	ANCESTRAL SPECIES	294								ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT00910000147451	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808 #33	ENSGT00940000160783 #32
Neopterygii	ANCESTRAL SPECIES	357													ENSGT00390000003324	ENSGT00390000016277.b	ENSGT00390000007438 #21	ENSGT00710000106790 #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808 #33	ENSGT00940000160783 #32
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	354															ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C	ENSGT00990000204936	ENSGT00940000174852	ENSGT00530000063506.B #36
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	198								ENSGT00390000010888	ENSGT00510000048167.b.a	ENSGT00940000161043	ENSGT00390000008711	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w.a #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C	ENSGT00990000204936	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.b
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	2	ENSSFOG00015002371 #18	NEDD8 (ENSSFOG00015032897)	gmpr2 (ENSSFOG00015002314)	dhrs4 (ENSSFOG00015002275)	tinf2 (ENSSFOG00015002264)	cideb (ENSSFOG00015033066)	ENSSFOG00015028501 #16	ENSSFOG00015026608	ENSSFOG00015030349	ENSSFOG00015028667	ENSSFOG00015032913	ENSSFOG00015033265	ENSSFOG00015002172	ENSSFOG00015024615	efs (ENSSFOG00015006316) #12	acin1b (ENSSFOG00015029162) #22	AJUBA (ENSSFOG00015031147) #27	ENSSFOG00015024945	mmp14a (ENSSFOG00015006500) #33	ENSSFOG00015006548 #32	ENSSFOG00015028877	ENSSFOG00015006569	ENSSFOG00015025527	ENSSFOG00015024805	ENSSFOG00015004561	ENSSFOG00015022232	ENSSFOG00015024750	ENSSFOG00015033166	ENSSFOG00015024910	ENSSFOG00015031013	oxa1l (ENSSFOG00015022134) #36
Asian bonytongue	MODERN SPECIES	2	ENSSFOG00015022358	ENSSFOG00015026759	ENSSFOG00015022394	ENSSFOG00015032367	ENSSFOG00015026545	ENSSFOG00015030104	ENSSFOG00015031965	ENSSFOG00015029713	ENSSFOG00015028338	ENSSFOG00015032785	ENSSFOG00015030809	ENSSFOG00015033303	ENSSFOG00015029951	EMC4 (ENSSFOG00015029492)	efs (ENSSFOG00015026135) #12	acin1b (ENSSFOG00015006344) #22	AJUBA (ENSSFOG00015006472) #27	ENSSFOG00015031719	mmp14a (ENSSFOG00015025400) #33	ENSSFOG00015028266 #32	ENSSFOG00015006558	ENSSFOG00015026248	ENSSFOG00015024938	ENSSFOG00015018268	ENSSFOG00015023381	ENSSFOG00015026480	ENSSFOG00015025816	ENSSFOG00015022276	ENSSFOG00015028065	ENSSFOG00015032797	oxa1l (ENSSFOG00015026573) #36
P. kingsleyae	MODERN SPECIES	61	slbp (ENSPKIG00000006183)	ENSPKIG00000006215	nkx1.2lb (ENSPKIG00000006255)	uvssa (ENSPKIG00000006302)	maea (ENSPKIG00000006400)	zgc:136929 (ENSPKIG00000006506)	ENSPKIG00000006601	spon2b (ENSPKIG00000006623)	ENSPKIG00000006651	ENSPKIG00000006667 ##17	fgfrl1a (ENSPKIG00000006697)	rnf4 (ENSPKIG00000006722)	ENSPKIG00000006746	ENSPKIG00000006780	efs (ENSPKIG00000006817) #12	acin1b (ENSPKIG00000006917) #22	AJUBA (ENSPKIG00000007050) #27	mrpl52 (ENSPKIG00000007085) #34	mmp14a (ENSPKIG00000007150) #33	ENSPKIG00000007221 #32	ENSPKIG00000007262 #20
Osteoglossiformes	ANCESTRAL SPECIES	112	ENSGT00940000154063.C.a.b.f	ENSGT00530000063615.b	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00390000000230.j	ENSGT00390000019377.a.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00940000174975.b	ENSGT00390000014495.n	ENSGT00940000154888.a	ENSGT00940000153649.B	ENSGT00940000164991.a.b	ENSGT00940000165001.a.b	ENSGT00940000155384.b.a	ENSGT00390000007438 #21	ENSGT00710000106790.w.b #22	ENSGT00940000157808.g #33	ENSGT00940000160531	ENSGT00940000157797	ENSGT00950000182893.a.b.e.b #16	ENSGT01030000234567.A.b.d	ENSGT00940000155856	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b.b #18	ENSGT00390000001141 #29	ENSGT01030000234576.D.a.b.a.b.a.b.b	ENSGT00940000160062.a #31	ENSGT00940000166379.e	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a.a #23	ENSGT00940000157841 #25
P. kingsleyae	MODERN SPECIES	276	ENSPKIG00000008625	ENSPKIG00000008707	ENSPKIG00000008837	ENSPKIG00000008850	ENSPKIG00000008876	PEA15 (ENSPKIG00000008916)	casq1a (ENSPKIG00000008951)	ENSPKIG00000008989	ENSPKIG00000009003	supt16h (ENSPKIG00000009024)	TOX4 (ENSPKIG00000009093)	chd8 (ENSPKIG00000009142)	cbln12 (ENSPKIG00000009193)	ENSPKIG00000009207	si:ch211-14a17.11 (ENSPKIG00000009225) #21	ENSPKIG00000009246 #22	mmp14b (ENSPKIG00000009302) #33	ENSPKIG00000009324	dhrs1 (ENSPKIG00000009350)	zp3f.1 (ENSPKIG00000009377)	zp3f.2 (ENSPKIG00000009408)	nedd8l (ENSPKIG00000009445)	ap1g2 (ENSPKIG00000009563)	ENSPKIG00000009832 #18	prmt5 (ENSPKIG00000009886) #29	ENSPKIG00000009935	rem2 (ENSPKIG00000009947) #31	nrl (ENSPKIG00000009970)	carmil3 (ENSPKIG00000010012)	CDH24 (ENSPKIG00000010089) #23	psmb5 (ENSPKIG00000010120) #25
Asian bonytongue	MODERN SPECIES		zgc:55733 (ENSSFOG00015012015)	ENSSFOG00015024525	ENSSFOG00015011910	pcp4l1 (ENSSFOG00015011885)	PEA15 (ENSSFOG00015029835)	casq1a (ENSSFOG00015011810)	ENSSFOG00015027938	ENSSFOG00015030234	supt16h (ENSSFOG00015011724)	ENSSFOG00015011696	chd8 (ENSSFOG00015011577)	cbln12 (ENSSFOG00015011562)	ENSSFOG00015022400	ENSSFOG00015025523	si:ch211-14a17.11 (ENSSFOG00015011510) #21	ENSSFOG00015025407 #22	mmp14b (ENSSFOG00015011416) #33	ENSSFOG00015033133	ENSSFOG00015011396	dhrs1 (ENSSFOG00015011365)	homeza (ENSSFOG00015011356) #16	zp3f.2 (ENSSFOG00015011065)	NEDD8 (ENSSFOG00015024301)	ap1g2 (ENSSFOG00015010986)	SLC7A8 (ENSSFOG00015010924) #18	prmt5 (ENSSFOG00015010853) #29	ENSSFOG00015010829	rem2 (ENSSFOG00015010817) #31	nrl (ENSSFOG00015010790)	carmil3 (ENSSFOG00015010629)	CDH24 (ENSSFOG00015010587) #23
Clupeocephala	ANCESTRAL SPECIES	134	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154810	ENSGT00940000154259.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00990000204936	ENSGT00510000050415.C	ENSGT00940000174852	ENSGT00530000063506.B #36
Otomorpha	ANCESTRAL SPECIES	100	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154810	ENSGT00940000154259.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20
Clupeiformes	ANCESTRAL SPECIES	97	ENSGT00800000124060.A.a	ENSGT00390000005739.a.a	ENSGT00940000167292.a	ENSGT00940000164916.e	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a	ENSGT01030000234620.a.b.b.a.i	ENSGT01030000234924	ENSGT00940000157941	ENSGT00940000156954	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031.a.a	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20
Atlantic herring	MODERN SPECIES	9	ENSCHAG00000016521	cyp26b1 (ENSCHAG00000016554)	exoc6b (ENSCHAG00000016581)	badb (ENSCHAG00000016842)	zgc:101765 (ENSCHAG00000016854)	ENSCHAG00000016861	gpha2 (ENSCHAG00000016872)	ENSCHAG00000016915	PPP2R5B (ENSCHAG00000016958)	arl2 (ENSCHAG00000018391)	b3gat3 (ENSCHAG00000018401)	naa40 (ENSCHAG00000018413)	rcor2 (ENSCHAG00000018483)	MARK2 (ENSCHAG00000018557)	efs (ENSCHAG00000021413) #12	acin1b (ENSCHAG00000021419) #22	AJUBA (ENSCHAG00000021423) #27	mrpl52 (ENSCHAG00000021444) #34	ENSCHAG00000021452 #20	ENSCHAG00000021461 #32	mmp14a (ENSCHAG00000021474) #33	ENSCHAG00000021527	nr2f1a (ENSCHAG00000021538)	fam172a (ENSCHAG00000021542)	ENSCHAG00000021561	MCTP1 (ENSCHAG00000021588)	ENSCHAG00000021834	thoc5 (ENSCHAG00000021874)	ENSCHAG00000022205	gcnt4a (ENSCHAG00000022222)	ENSCHAG00000022227
Denticle herring	MODERN SPECIES		badb (ENSDCDG00000026179)	zgc:101765 (ENSDCDG00000026180)	ENSDCDG00000026181	gpha2 (ENSDCDG00000026182)	PPP2R5B (ENSDCDG00000026195)	batf2 (ENSDCDG00000027066)	arl2 (ENSDCDG00000027067)	b3gat3 (ENSDCDG00000000139)	naa40 (ENSDCDG00000000144)	rcor2 (ENSDCDG00000000163)	ENSDCDG00000000176	ENSDCDG00000000230	ENSDCDG00000000372	MARK2 (ENSDCDG00000000504)	efs (ENSDCDG00000000634) #12	acin1b (ENSDCDG00000000647) #22	AJUBA (ENSDCDG00000000668) #27	mrpl52 (ENSDCDG00000000677) #34	mmp14a (ENSDCDG00000000698) #33	ENSDCDG00000000810 #32	ENSDCDG00000000832	ENSDCDG00000000867	ENSDCDG00000000868	ENSDCDG00000000870	ENSDCDG00000000874	ENSDCDG00000000878	ENSDCDG00000000879	ENSDCDG00000000884	ENSDCDG00000000888	ENSDCDG00000000890	ENSDCDG00000000894
Otophysi	ANCESTRAL SPECIES	9	ENSGT00940000159429	ENSGT00950000183068.a.a.a.b	ENSGT00940000165121.b	ENSGT00940000158132.o	ENSGT00390000018904	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00960000187089	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00940000159574	ENSGT00940000155856.cb	ENSGT00940000158278.e.a #18	ENSGT00940000156061	ENSGT00940000154259.a	ENSGT00940000154810.kb.b	ENSGT00390000011904	ENSGT00390000013043	ENSGT00390000005342	ENSGT00940000162502.b
Characiphysae	ANCESTRAL SPECIES	45	ENSGT00940000159429	ENSGT00950000183068.a.a.a.b	ENSGT00940000165121.b	ENSGT00940000158132.o	ENSGT00390000018904	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00960000187089	ENSGT01040000240385.A.b.b.b.a.a.b.b.b	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT01040000240385.A.b.b.b.a.a.a.c.a	ENSGT01040000240385.A.b.b.b.a.a.b.a.a.b	ENSGT01050000244843.d.i.a.a.a	ENSGT00940000159574	ENSGT00940000155856.cb	ENSGT00940000158278.e.a #18	ENSGT00940000156061	ENSGT00940000154259.a	ENSGT00940000154810.kb.b	ENSGT00940000154810.kb.a	ENSGT00390000011904
Channel catfish	MODERN SPECIES	26	ENSIPUG00000005838	ENSIPUG00000005889	ENSIPUG00000005896	syt4 (ENSIPUG00000005912)	ENSIPUG00000005925	ENSIPUG00000005938	ENSIPUG00000005972	ENSIPUG00000005984	homezb (ENSIPUG00000005992) #16	cideb (ENSIPUG00000006003)	ENSIPUG00000006040	ENSIPUG00000006090	tinf2 (ENSIPUG00000006103)	dhrs4 (ENSIPUG00000006121)	NEDD9 (ENSIPUG00000006217) #12	acin1b (ENSIPUG00000006269) #22	ajuba (ENSIPUG00000006533) #27	mrpl52 (ENSIPUG00000006550) #34	MMP14 (ENSIPUG00000006564) #33	lrp10 (ENSIPUG00000006635) #32	ENSIPUG00000006678	ENSIPUG00000006706	ENSIPUG00000006758	ENSIPUG00000006783	ENSIPUG00000006793	ENSIPUG00000006806	gmpr2 (ENSIPUG00000006839)	ENSIPUG00000006875	ENSIPUG00000006888	gmpr2 (ENSIPUG00000006903)	ENSIPUG00000006938
Characiphysae_b	ANCESTRAL SPECIES	59	ENSGT00940000159429	ENSGT00950000183068.a.a.a.b	ENSGT00940000165121.b	ENSGT00940000158132.o	ENSGT00390000018904	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00960000187089	ENSGT01040000240385.A.b.b.b.a.a.b.b.b	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT01040000240385.A.b.b.b.a.a.a.c.a	ENSGT01040000240385.A.b.b.b.a.a.b.a.a.b	ENSGT01050000244843.d.i.a.a.a	ENSGT00940000159574	ENSGT00940000155856.cb	ENSGT00940000158278.e.a #18	ENSGT00940000156061	ENSGT00940000154259.a	ENSGT00940000154810.kb.b	ENSGT00940000154810.kb.a	ENSGT00390000011904
Electric eel	MODERN SPECIES	170	zgc:162171 (ENSEEEG00000005399)	rab39bb (ENSEEEG00000005400)	vbp1 (ENSEEEG00000005402)	syt4 (ENSEEEG00000005405)	ENSEEEG00000005407	ENSEEEG00000005423	ENSEEEG00000005435	ENSEEEG00000005620	ENSEEEG00000005726	ENSEEEG00000005809	homezb (ENSEEEG00000005864) #16	cideb (ENSEEEG00000005866)	tinf2 (ENSEEEG00000005867)	dhrs4 (ENSEEEG00000005869)	efs (ENSEEEG00000005871) #12	acin1b (ENSEEEG00000005872) #22	AJUBA (ENSEEEG00000005914) #27	mrpl52 (ENSEEEG00000005930) #34	mmp14a (ENSEEEG00000005937) #33	ENSEEEG00000005973 #32	ENSEEEG00000005985	gmpr2 (ENSEEEG00000006064)	nedd8 (ENSEEEG00000006095)	slc7a8a (ENSEEEG00000006099) #18	SVEP1 (ENSEEEG00000006104)	txn (ENSEEEG00000006106)	ptgr1.1 (ENSEEEG00000006108)	haus3 (ENSEEEG00000006109)	poln (ENSEEEG00000006113)	nat8l (ENSEEEG00000006116)	C4orf48 (ENSEEEG00000006118)
Characoidei	ANCESTRAL SPECIES	73	ENSGT00940000159429	ENSGT00950000183068.a.a.a.b	ENSGT00940000165121.b	ENSGT00940000158132.o	ENSGT00390000018904	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00960000187089	ENSGT01040000240385.A.b.b.b.a.a.b.b.b.f.b	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT01040000240385.A.b.b.b.a.a.a.c.a.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.a.b	ENSGT01050000244843.d.i.a.a.a	ENSGT00940000159574	ENSGT00940000155856.cb	ENSGT00940000158278.e.a #18	ENSGT00940000156061	ENSGT00940000154259.a	ENSGT00940000154810.kb.b	ENSGT00940000154810.kb.a	ENSGT00390000011904
Red-bellied piranha	MODERN SPECIES	339									ENSPNAG00000022625	ENSPNAG00000022594	homezb (ENSPNAG00000022198) #16	cideb (ENSPNAG00000022175)	tinf2 (ENSPNAG00000022169)	dhrs4 (ENSPNAG00000022154)	efs (ENSPNAG00000003710) #12	acin1b (ENSPNAG00000022123) #22	AJUBA (ENSPNAG00000022017) #27	mrpl52 (ENSPNAG00000021993) #34	mmp14a (ENSPNAG00000005852) #33	ENSPNAG00000021910 #32	ENSPNAG00000021898	ENSPNAG00000021880	ENSPNAG00000021860	gmpr2 (ENSPNAG00000021781)	nedd8 (ENSPNAG00000021723)	slc7a8a (ENSPNAG00000003693) #18	ENSPNAG00000021623	SVEP1 (ENSPNAG00000021584)	TXN (ENSPNAG00000021335)	ENSPNAG00000021330	ENSPNAG00000021323
Mexicana tetra	MODERN SPECIES	7	syt4 (ENSAMXG00000003725)	ENSAMXG00000003730	ENSAMXG00000003739	ENSAMXG00000039211	ENSAMXG00000037727	ENSAMXG00000032115	ENSAMXG00000005035	ENSAMXG00000043354	ENSAMXG00000003798	ENSAMXG00000003753	homezb (ENSAMXG00000003816) #16	cideb (ENSAMXG00000003822)	tinf2 (ENSAMXG00000003829)	dhrs4 (ENSAMXG00000003836)	efs (ENSAMXG00000003838) #12	acin1b (ENSAMXG00000036892) #22	ENSAMXG00000003875 #27	mrpl52 (ENSAMXG00000041681) #34	mmp14a (ENSAMXG00000033354) #33	ENSAMXG00000042711 #32	ENSAMXG00000043256	ENSAMXG00000037487	ENSAMXG00000035305	ENSAMXG00000032497	ENSAMXG00000003895	ENSAMXG00000005060	ENSAMXG00000043378	ENSAMXG00000029334	ENSAMXG00000043204	ENSAMXG00000040455	ENSAMXG00000003901
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00950000183068.a.a.a.b	ENSGT00940000165121.b.a	ENSGT00940000158132.o	ENSGT00390000018904	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00960000187089	ENSGT00980000198821.a	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00940000158278.e.a #18	ENSGT00940000156061	ENSGT00940000154259.b.a	ENSGT00940000154810.kb.b	ENSGT00940000154810.kb.a	ENSGT00390000011904	ENSGT00390000013043	ENSGT00390000005342	ENSGT00940000162502.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.a.a.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	199	ENSGT00940000159429.h	ENSGT00950000183068.a.a.a.b.b	ENSGT00940000165121.b.a.a	ENSGT00940000158132.o.a	ENSGT00390000018904.f	ENSGT00940000159026.f	ENSGT00390000018729.b	ENSGT00390000007726.b.c	ENSGT00960000187089	ENSGT00980000198821.a	ENSGT00950000182893.a.b.e.a.a #16	ENSGT00390000018596.A.a.b.b	ENSGT00400000022326.a	ENSGT00940000164342.g	ENSGT00950000183008.a.a.b.c.a #12	ENSGT00710000106790.w.c.a #22	ENSGT00940000160978.b #27
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00390000018904.f	ENSGT00940000159026.f	ENSGT00390000018729.b	ENSGT00390000007726.b.c	ENSGT00960000187089	ENSGT00980000198821.a	ENSGT00950000182893.a.b.e.a.a #16	ENSGT00390000018596.A.a.b.b	ENSGT01050000245396	ENSGT00940000164342.h	ENSGT00950000183008.a.a.b.c.b #12	ENSGT00710000106790.w.c.b #22	ENSGT00400000022326.a	ENSGT00940000164342.g	ENSGT00950000183008.a.a.b.c.a #12	ENSGT00710000106790.w.c.a #22	ENSGT00710000106790.w.d #22	ENSGT00940000160978.a.b #27	ENSGT00940000160978.a.a #27	ENSGT00390000005763 #34	ENSGT00940000157808.h.b #33	ENSGT00940000160783.b #32	ENSGT00940000163573 #20	ENSGT01040000240385.H.g.h.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.a.a.b.b	ENSGT00940000159574.r	ENSGT00940000155856.cb.a	ENSGT00940000158278.e.a.b #18	ENSGT00940000156061.b	ENSGT00940000154259.b.a.a	ENSGT00940000154810.kb.b
Common carp reference	MODERN SPECIES		ENSCCRG00000034246	zgc:162171 (ENSCCRG00000059463)	rab39bb (ENSCCRG00000019621)	vbp1 (ENSCCRG00000066132)	syt4 (ENSCCRG00000019636)	ENSCCRG00000019640	ENSCCRG00000019648	ENSCCRG00000019653	ENSCCRG00000019670	ENSCCRG00000064037	homezb (ENSCCRG00000080078) #16	cideb (ENSCCRG00000019739)	tinf2 (ENSCCRG00000019741)	dhrs4 (ENSCCRG00000076827)	efs (ENSCCRG00000007565) #12	acin1b (ENSCCRG00000021844) #22	ENSCCRG00000054591 #27	mrpl52 (ENSCCRG00000021859) #34	mmp14a (ENSCCRG00000074414) #33	ENSCCRG00000069495 #32	ENSCCRG00000080597 #20	ENSCCRG00000029923	si:ch211-216p19.6 (ENSCCRG00000029931)	gmpr2 (ENSCCRG00000057434)	nedd8 (ENSCCRG00000063681)	ENSCCRG00000069760	slc7a8a (ENSCCRG00000027989) #18	ENSCCRG00000006764	txn (ENSCCRG00000028080)	haus3 (ENSCCRG00000028090)	nat8l (ENSCCRG00000054343)
Golden-line barbel	MODERN SPECIES	23	zgc:92429 (ENSSGRG00000047363)	ENSSGRG00000047159	ENSSGRG00000047148	rab39bb (ENSSGRG00000047147)	vbp1 (ENSSGRG00000047145)	syt4 (ENSSGRG00000047144)	ENSSGRG00000047141	ENSSGRG00000047138	ENSSGRG00000047137	homezb (ENSSGRG00000047135) #16	cideb (ENSSGRG00000047134)	ENSSGRG00000047133	tinf2 (ENSSGRG00000047132)	dhrs4 (ENSSGRG00000047111)	efs (ENSSGRG00000047109) #12	acin1b (ENSSGRG00000047102) #22	AJUBA (ENSSGRG00000047100) #27	mrpl52 (ENSSGRG00000047098) #34	mmp14a (ENSSGRG00000047077) #33	ENSSGRG00000047076 #32	ENSSGRG00000047074	si:ch211-216p19.6 (ENSSGRG00000047073)	ENSSGRG00000047071	nedd8 (ENSSGRG00000047070)	slc7a8a (ENSSGRG00000046992) #18	SVEP1 (ENSSGRG00000046985)	txn (ENSSGRG00000046984)	PTGR1 (ENSSGRG00000046983)	ptgr1.1 (ENSSGRG00000046981)	haus3 (ENSSGRG00000046980)	poln (ENSSGRG00000046979)
Goldfish	MODERN SPECIES	47	ENSCARG00000016286	zgc:162171 (ENSCARG00000016265)	rab39bb (ENSCARG00000016259)	vbp1 (ENSCARG00000016248)	syt4 (ENSCARG00000016232)	ENSCARG00000016181	ENSCARG00000016171	ENSCARG00000016143	ENSCARG00000016135	ENSCARG00000016128	homezb (ENSCARG00000016125) #16	cideb (ENSCARG00000016100)	tinf2 (ENSCARG00000016079)	dhrs4 (ENSCARG00000016035)	efs (ENSCARG00000016000) #12	acin1b (ENSCARG00000015950) #22	AJUBA (ENSCARG00000015915) #27	mrpl52 (ENSCARG00000015902) #34	mmp14a (ENSCARG00000015860) #33	ENSCARG00000015851 #32	ENSCARG00000015843 #20	ENSCARG00000015840	si:ch211-216p19.6 (ENSCARG00000015834)	ENSCARG00000015809	nedd8 (ENSCARG00000015799)	slc7a8a (ENSCARG00000015510) #18	SVEP1 (ENSCARG00000011658)	txn (ENSCARG00000011459)	ENSCARG00000011447	haus3 (ENSCARG00000011441)	poln (ENSCARG00000011376)
Cyprininae	ANCESTRAL SPECIES	1	ENSGT00950000182962.a.b.a.b.b	ENSGT00950000182962.a.b.a.b.a	ENSGT01060000248564.b.a.b.b.b.a.b	ENSGT00940000164406.m	ENSGT00940000159429.g	ENSGT00950000183068.a.a.a.b.a	ENSGT00940000165121.b.a.b	ENSGT00940000158132.o.b	ENSGT00390000018904.e	ENSGT00940000159026.e	ENSGT00950000182893.a.b.e.a.b #16	ENSGT00390000018596.A.a.b.a	ENSGT01050000245396	ENSGT00940000164342.h	ENSGT00950000183008.a.a.b.c.b #12	ENSGT00710000106790.w.c.b #22	ENSGT00940000160978.a.b #27	ENSGT00940000160978.a.a #27	ENSGT00390000005763 #34	ENSGT00940000157808.h.b #33	ENSGT00940000160783.b #32	ENSGT00940000163573 #20	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.a.a.b.b	ENSGT00940000159574.r	ENSGT00940000155856.cb	ENSGT00940000158278.e.a.b #18	ENSGT00940000156061.b	ENSGT00940000154259.b.a.a	ENSGT00940000154810.kb.b	ENSGT00940000154810.kb.a.c.b	ENSGT00390000011904.g
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00940000159429.h.a	ENSGT00950000183068.a.a.a.b.b	ENSGT00940000165121.b.a.a	ENSGT00940000158132.o.a	ENSGT00390000018904.f	ENSGT00940000159026.f	ENSGT00390000018729.b	ENSGT00390000007726.b.c	ENSGT00960000187089	ENSGT00980000198821.a	ENSGT00950000182893.a.b.e.a.a #16	ENSGT00390000018596.A.a.b.b	ENSGT01050000245396	ENSGT00940000164342.h	ENSGT00950000183008.a.a.b.c.b #12	ENSGT00710000106790.w.c.b #22	ENSGT00400000022326.a	ENSGT00940000164342.g	ENSGT00950000183008.a.a.b.c.a #12	ENSGT00710000106790.w.c.a #22	ENSGT00710000106790.w.d #22	ENSGT00940000160978.a.b #27	ENSGT00940000160978.a.a #27	ENSGT00390000005763 #34	ENSGT00940000157808.h.b #33	ENSGT00940000160783.b #32	ENSGT00940000163573 #20	ENSGT01040000240385.H.g.h.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.a.a.b.b	ENSGT00940000159574.r	ENSGT00940000155856.cb.a
Common carp reference	MODERN SPECIES	6	htr2cl1 (ENSCCRG00000019463)	zgc:109889 (ENSCCRG00000082642)	ENSCCRG00000071136	ENSCCRG00000032889	zgc:92429 (ENSCCRG00000034156)	ENSCCRG00000039685	zgc:162171 (ENSCCRG00000067611)	rab39bb (ENSCCRG00000081673)	vbp1 (ENSCCRG00000072042)	syt4 (ENSCCRG00000061427)	homezb (ENSCCRG00000051676) #16	cideb (ENSCCRG00000081549)	ENSCCRG00000062745	dhrs4 (ENSCCRG00000019742)	efs (ENSCCRG00000051671) #12	acin1b (ENSCCRG00000021894) #22	ENSCCRG00000021852 #27	mrpl52 (ENSCCRG00000060943) #34	mmp14a (ENSCCRG00000075429) #33	ENSCCRG00000071206 #32	si:ch211-216p19.6 (ENSCCRG00000071241)	nedd8 (ENSCCRG00000081951)	slc7a8a (ENSCCRG00000075789) #18	ENSCCRG00000028002	txn (ENSCCRG00000006754)	ptgr1.1 (ENSCCRG00000056350)	haus3 (ENSCCRG00000029005)	nat8l (ENSCCRG00000063238)	C4orf48 (ENSCCRG00000052931)	nelfa (ENSCCRG00000037895)	faah2b (ENSCCRG00000037928)
Goldfish	MODERN SPECIES	25	htr2cl1 (ENSCARG00000062510)	zgc:109889 (ENSCARG00000062477)	ENSCARG00000062460	ENSCARG00000062343	zgc:92429 (ENSCARG00000062292)	ENSCARG00000061625	zgc:162171 (ENSCARG00000061597)	rab39bb (ENSCARG00000061586)	vbp1 (ENSCARG00000061574)	syt4 (ENSCARG00000061562)	homezb (ENSCARG00000061525) #16	cideb (ENSCARG00000061480)	ENSCARG00000061459	dhrs4 (ENSCARG00000061126)	efs (ENSCARG00000061070) #12	acin1b (ENSCARG00000060813) #22	AJUBA (ENSCARG00000060749) #27	ENSCARG00000060726	mmp14a (ENSCARG00000060552) #33	ENSCARG00000060507 #32	gmpr2 (ENSCARG00000060420)	ENSCARG00000060362	slc7a8a (ENSCARG00000060217) #18	SVEP1 (ENSCARG00000059090)	txn (ENSCARG00000059020)	ptgr1.1 (ENSCARG00000058963)	haus3 (ENSCARG00000058944)	nat8l (ENSCARG00000058925)	C4orf48 (ENSCARG00000058907)	nelfa (ENSCARG00000058340)	TESK1 (ENSCARG00000058330)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00710000106790.w.d #22
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00940000159026.f	ENSGT00390000018729.b	ENSGT00390000007726.b.c	ENSGT00960000187089	ENSGT00980000198821.a	ENSGT00950000182893.a.b.e.a.a #16	ENSGT00390000018596.A.a.b.b	ENSGT01050000245396	ENSGT00940000164342.h	ENSGT00950000183008.a.a.b.c.b #12	ENSGT00710000106790.w.c.b #22	ENSGT00400000022326.a	ENSGT00940000164342.g	ENSGT00950000183008.a.a.b.c.a #12	ENSGT00710000106790.w.c.a #22	ENSGT00710000106790.w.d #22	ENSGT00940000160978.a.b #27	ENSGT00940000160978.a.a #27	ENSGT00390000005763 #34	ENSGT00940000157808.h.b #33	ENSGT00940000160783.b #32	ENSGT00940000163573 #20	ENSGT01040000240385.H.g.h.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.a.a.b.b	ENSGT00940000159574.r	ENSGT00940000155856.cb.a	ENSGT00940000158278.e.a.b #18	ENSGT00940000156061.b	ENSGT00940000154259.b.a.a	ENSGT00940000154810.kb.b	ENSGT00940000154810.kb.a.c.b
Golden-line barbel	MODERN SPECIES	98	ENSSGRG00000046408	zgc:92429 (ENSSGRG00000047062)	ENSSGRG00000047063	zgc:162171 (ENSSGRG00000047116)	rab39bb (ENSSGRG00000047118)	vbp1 (ENSSGRG00000047121)	syt4 (ENSSGRG00000047123)	ENSSGRG00000047124	ENSSGRG00000047126	ENSSGRG00000047150	homezb (ENSSGRG00000047153) #16	cideb (ENSSGRG00000047155)	tinf2 (ENSSGRG00000047157)	dhrs4 (ENSSGRG00000047161)	dhrs4 (ENSSGRG00000047166)	acin1b (ENSSGRG00000047170) #22	AJUBA (ENSSGRG00000047177) #27	mmp14a (ENSSGRG00000047179) #33	ENSSGRG00000047182 #32	si:ch211-216p19.6 (ENSSGRG00000047183)	gmpr2 (ENSSGRG00000047188)	nedd8 (ENSSGRG00000047416)	slc7a8a (ENSSGRG00000047430) #18	ENSSGRG00000047432	ENSSGRG00000047433	SVEP1 (ENSSGRG00000047435)	txn (ENSSGRG00000047438)	ENSSGRG00000047441	ptgr1.1 (ENSSGRG00000047453)	haus3 (ENSSGRG00000047490)	poln (ENSSGRG00000047492)
Zebrafish	MODERN SPECIES	22	zgc:92429 (ENSDARG00000030176)	ENSDARG00000029170	zgc:162171 (ENSDARG00000036499)	rab39bb (ENSDARG00000036501)	vbp1 (ENSDARG00000030241)	syt4 (ENSDARG00000036505)	ENSDARG00000102029	ENSDARG00000076443	ENSDARG00000101235	ENSDARG00000105607	homezb (ENSDARG00000024598) #16	cideb (ENSDARG00000012640)	tinf2 (ENSDARG00000054473)	dhrs4 (ENSDARG00000021135)	efs (ENSDARG00000088835) #12	acin1b (ENSDARG00000026842) #22	AJUBA (ENSDARG00000077842) #27	mrpl52 (ENSDARG00000090568) #34	mmp14a (ENSDARG00000002235) #33	ENSDARG00000054539 #32	ENSDARG00000098915 #20	zgc:153151 (ENSDARG00000069563)	si:ch211-216p19.6 (ENSDARG00000027907)	gmpr2 (ENSDARG00000061301)	nedd8 (ENSDARG00000007989)	slc7a8a (ENSDARG00000075831) #18	SVEP1 (ENSDARG00000013526)	txn (ENSDARG00000044125)	ENSDARG00000087017	ptgr1.1 (ENSDARG00000024877)	haus3 (ENSDARG00000061385)
Euteleosteomorpha	ANCESTRAL SPECIES	28	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000179548	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a	ENSGT00940000160414.c
Acanthomorphata	ANCESTRAL SPECIES	50	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00980000198821	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i	ENSGT00940000174852	ENSGT00940000175830	ENSGT00510000050415.C.j	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000174852	ENSGT00940000175830	ENSGT00510000050415.C.j	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000174852	ENSGT00940000175830	ENSGT00510000050415.C.j	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Tiger tail seahorse	MODERN SPECIES	506	ENSHCOG00000010939	haus3 (ENSHCOG00000010918)	ptgr1.1 (ENSHCOG00000010905)	ENSHCOG00000010900	ENSHCOG00000010889	ENSHCOG00000010878	ENSHCOG00000010869	ENSHCOG00000010847	slc7a8a (ENSHCOG00000010836) #18	ENSHCOG00000010817	gmpr2 (ENSHCOG00000010809)	cideb (ENSHCOG00000010798)	tinf2 (ENSHCOG00000010794)	dhrs4 (ENSHCOG00000010787)	efs (ENSHCOG00000010768) #12	acin1b (ENSHCOG00000000814) #22	AJUBA (ENSHCOG00000010600) #27	mrpl52 (ENSHCOG00000010579) #34	mmp14a (ENSHCOG00000010573) #33	ENSHCOG00000010524 #32	ENSHCOG00000010502 #20	rtn3 (ENSHCOG00000010493)	ZFTA (ENSHCOG00000010456)	ecsit (ENSHCOG00000010406)	EML3 (ENSHCOG00000010392)	mta2 (ENSHCOG00000010372)	cth1 (ENSHCOG00000010276)	taf6l (ENSHCOG00000010268)	fis1 (ENSHCOG00000010246)	cldn15a (ENSHCOG00000010230)	dnajc3b (ENSHCOG00000010223)
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000176975	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000175830	ENSGT00510000050415.C.j.b	ENSGT00940000174573	ENSGT01030000239687	ENSGT00940000174852	ENSGT00530000063506.B #36
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00940000176132	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.j.a	ENSGT00940000177580	ENSGT00510000050415.C.i.a.b	ENSGT00940000172369	ENSGT01090000260150	ENSGT00510000050415.C.j.b	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT00940000174852	ENSGT00530000063506.B #36
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00940000176132	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.j.a	ENSGT00940000177580	ENSGT00510000050415.C.i.a.b	ENSGT00940000176975	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b
Tetraodontidae	ANCESTRAL SPECIES	70	ENSGT00390000005342	ENSGT00390000013043	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.j	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000165806	ENSGT00940000159574	ENSGT00390000018596.A.a.b.f	ENSGT01050000245396	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32
Fugu	MODERN SPECIES	20	C4orf48 (ENSTRUG00000005103)	nat8l (ENSTRUG00000004872)	poln (ENSTRUG00000004639)	haus3 (ENSTRUG00000004493)	ptgr1.1 (ENSTRUG00000004223)	ENSTRUG00000004064	ENSTRUG00000023298	SVEP1 (ENSTRUG00000002627)	slc7a8a (ENSTRUG00000025992) #18	ENSTRUG00000001671	gmpr2 (ENSTRUG00000001414)	ENSTRUG00000022143	cideb (ENSTRUG00000001434)	ENSTRUG00000028609	efs (ENSTRUG00000008854) #12	acin1b (ENSTRUG00000008622) #22	AJUBA (ENSTRUG00000033491) #27	mrpl52 (ENSTRUG00000027145) #34	mmp14a (ENSTRUG00000008020) #33	ENSTRUG00000024306 #32	ENSTRUG00000027671	ENSTRUG00000006626	badb (ENSTRUG00000028528)	gpha2 (ENSTRUG00000006535)	ENSTRUG00000006507	PPP2R5B (ENSTRUG00000005676)	ENSTRUG00000025866	arl2 (ENSTRUG00000005435)	ENSTRUG00000005398	b3gat3 (ENSTRUG00000005136)	naa40 (ENSTRUG00000004932)
Tetraodon	MODERN SPECIES	26	ptgr1.1 (ENSTNIG00000013855)	ENSTNIG00000013854	ENSTNIG00000013853	ENSTNIG00000013852	ENSTNIG00000013851	nedd8 (ENSTNIG00000000181)	gmpr2 (ENSTNIG00000013850)	cideb (ENSTNIG00000013849)	dhrs4 (ENSTNIG00000013848)	slc7a8a (ENSTNIG00000013847) #18	nedd8 (ENSTNIG00000013846)	gmpr2 (ENSTNIG00000013845)	CIDEB (ENSTNIG00000013844)	dhrs4 (ENSTNIG00000013843)	efs (ENSTNIG00000013842) #12	acin1b (ENSTNIG00000013841) #22	AJUBA (ENSTNIG00000013840) #27	mrpl52 (ENSTNIG00000013839) #34	mmp14a (ENSTNIG00000013838) #33	LRP10 (ENSTNIG00000013837) #32	ENSTNIG00000013836	badb (ENSTNIG00000013835)	zgc:101765 (ENSTNIG00000013834)	gpha2 (ENSTNIG00000013833)	ENSTNIG00000013832	PPP2R5B (ENSTNIG00000013831)	arl2 (ENSTNIG00000013830)	b3gat3 (ENSTNIG00000013829)	naa40 (ENSTNIG00000013828)	krcp (ENSTNIG00000013827)	MARK2 (ENSTNIG00000013826)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00940000176132	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.j.a	ENSGT00940000177580.c.a	ENSGT00510000050415.C.i.a.b	ENSGT00940000172369	ENSGT00940000176975	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35
Ballan wrasse	MODERN SPECIES	144	haus3 (ENSLBEG00000000371)	ptgr1.1 (ENSLBEG00000000388)	ENSLBEG00000000481	ENSLBEG00000000805	SVEP1 (ENSLBEG00000001069)	slc7a8a (ENSLBEG00000001226) #18	ENSLBEG00000001271	gmpr2 (ENSLBEG00000001297)	ENSLBEG00000001318	ENSLBEG00000001332	ENSLBEG00000001346	cideb (ENSLBEG00000001360)	tinf2 (ENSLBEG00000001418)	dhrs4 (ENSLBEG00000001429)	efs (ENSLBEG00000001476) #12	ENSLBEG00000001494 #22	AJUBA (ENSLBEG00000001589) #27	mrpl52 (ENSLBEG00000001625) #34	mmp14a (ENSLBEG00000001654) #33	ENSLBEG00000001726 #32	ENSLBEG00000001743	ENSLBEG00000001836	ENSLBEG00000001912	ENSLBEG00000001938
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00940000176132	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.i.a.b	ENSGT00940000176975	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000163587.a.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00940000176975.e	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Gilthead seabream	MODERN SPECIES	1	ptgr1.1 (ENSSAUG00010006221)	ENSSAUG00010006243	SVEP1 (ENSSAUG00010006257)	slc7a8a (ENSSAUG00010007344) #18	nedd8 (ENSSAUG00010007476)	gmpr2 (ENSSAUG00010007480)	ENSSAUG00010007535	ENSSAUG00010007537	ENSSAUG00010007540	ENSSAUG00010007541	ENSSAUG00010007543	cideb (ENSSAUG00010007545)	tinf2 (ENSSAUG00010007546)	dhrs4 (ENSSAUG00010007558)	efs (ENSSAUG00010007559) #12	acin1b (ENSSAUG00010007564) #22	AJUBA (ENSSAUG00010007570) #27	mrpl52 (ENSSAUG00010007572) #34	mmp14a (ENSSAUG00010007593) #33	ENSSAUG00010008523 #32	ENSSAUG00010008532	ENSSAUG00010008547	ENSSAUG00010008549	ENSSAUG00010008551	ENSSAUG00010008555	ENSSAUG00010008557	ENSSAUG00010008559	ENSSAUG00010008568	ENSSAUG00010008573	ENSSAUG00010008584	ENSSAUG00010008588
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00990000205295	ENSGT00510000050415.C.i.a.b.d	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b
Large yellow croaker	MODERN SPECIES		poln (ENSLCRG00005006142)	haus3 (ENSLCRG00005006141)	ptgr1.1 (ENSLCRG00005006139)	ENSLCRG00005006137	SVEP1 (ENSLCRG00005005806)	slc7a8a (ENSLCRG00005005700) #18	nedd8 (ENSLCRG00005005661)	gmpr2 (ENSLCRG00005005638)	ENSLCRG00005005632	ENSLCRG00005005629	ENSLCRG00005005627	cideb (ENSLCRG00005005607)	ENSLCRG00005005604	dhrs4 (ENSLCRG00005005550)	efs (ENSLCRG00005005546) #12	acin1b (ENSLCRG00005005455) #22	AJUBA (ENSLCRG00005005449) #27	mrpl52 (ENSLCRG00005005446) #34	mmp14a (ENSLCRG00005004907) #33	ENSLCRG00005004515	TMEM70 (ENSLCRG00005004494)	cyp7a1 (ENSLCRG00005004480)	ENSLCRG00005004479	polr2b (ENSLCRG00005004411)	ENSLCRG00005004400	igfbp7 (ENSLCRG00005004387)	COX18 (ENSLCRG00005004385) ##36	ENSLCRG00005004384	selenot2 (ENSLCRG00005004380)	rnf4 (ENSLCRG00005004374)	sqstm1 (ENSLCRG00005004369)
European seabass	MODERN SPECIES	16	ptgr1.1 (ENSDLAG00005008105)	ENSDLAG00005008099	ENSDLAG00005007536	slc7a8a (ENSDLAG00005032317) #18	nedd8 (ENSDLAG00005007155)	ENSDLAG00005032666	ENSDLAG00005030665	ENSDLAG00005007061	gmpr2 (ENSDLAG00005027754)	ENSDLAG00005030931	ENSDLAG00005032593	cideb (ENSDLAG00005007018)	tinf2 (ENSDLAG00005006983)	dhrs4 (ENSDLAG00005006949)	efs (ENSDLAG00005006936) #12	acin1b (ENSDLAG00005006915) #22	ENSDLAG00005033636 #27	ENSDLAG00005033005	mrpl52 (ENSDLAG00005006866) #34	mmp14a (ENSDLAG00005006759) #33	ENSDLAG00005006730 #32	ENSDLAG00005002774	ENSDLAG00005027501 #20	ENSDLAG00005006699	ENSDLAG00005006689	ENSDLAG00005006683	ENSDLAG00005002756	ENSDLAG00005006713	ENSDLAG00005027924	ENSDLAG00005034325	ENSDLAG00005021740
Perciformes	ANCESTRAL SPECIES	19	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.i.a.b	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000013043	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.i.a.b	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT01030000239687	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Channel bull blenny	MODERN SPECIES	9	nat8l (ENSCGOG00000013630)	poln (ENSCGOG00000013629)	haus3 (ENSCGOG00000013626)	SVEP1 (ENSCGOG00000013378)	ENSCGOG00000013371	PTGR1 (ENSCGOG00000013370)	ENSCGOG00000013367	SVEP1 (ENSCGOG00000013140)	slc7a8a (ENSCGOG00000012584) #18	nedd8 (ENSCGOG00000012538)	gmpr2 (ENSCGOG00000012523)	cideb (ENSCGOG00000012520)	tinf2 (ENSCGOG00000012518)	dhrs4 (ENSCGOG00000012499)	efs (ENSCGOG00000012492) #12	acin1b (ENSCGOG00000012482) #22	AJUBA (ENSCGOG00000012473) #27	mrpl52 (ENSCGOG00000012471) #34	mmp14a (ENSCGOG00000011530) #33	ENSCGOG00000011499 #32	ENSCGOG00000011762	ENSCGOG00000011760	ENSCGOG00000011758	ENSCGOG00000011753	ENSCGOG00000011749	oxa1l (ENSCGOG00000011662) #36	slc7a7 (ENSCGOG00000011493) #35	ENSCGOG00000011488	CCNB1IP1 (ENSCGOG00000011486)	ttc5 (ENSCGOG00000011444)	mettl3 (ENSCGOG00000011414)
Pike perch	MODERN SPECIES	81	C4orf48 (ENSSLUG00000017715)	nat8l (ENSSLUG00000017719)	poln (ENSSLUG00000017722)	haus3 (ENSSLUG00000017736)	ptgr1.1 (ENSSLUG00000017743)	ENSSLUG00000017758	SVEP1 (ENSSLUG00000017772)	slc7a8a (ENSSLUG00000017873) #18	nedd8 (ENSSLUG00000018001)	gmpr2 (ENSSLUG00000018033)	ENSSLUG00000018096	cideb (ENSSLUG00000018101)	ENSSLUG00000018104	dhrs4 (ENSSLUG00000018109)	efs (ENSSLUG00000018122) #12	acin1b (ENSSLUG00000018128) #22	ENSSLUG00000018183 #27	mrpl52 (ENSSLUG00000018198) #34	mmp14a (ENSSLUG00000018215) #33	ENSSLUG00000018407 #32	ENSSLUG00000018410	ENSSLUG00000018414	ENSSLUG00000018419	ENSSLUG00000018422	oxa1l (ENSSLUG00000018429) #36	slc7a7 (ENSSLUG00000018458) #35	ENSSLUG00000018599	CCNB1IP1 (ENSSLUG00000018605)	ttc5 (ENSSLUG00000018610)	mettl3 (ENSSLUG00000018627)	tm4sf5 (ENSSLUG00000018644)
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00390000013043	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000172369	ENSGT01010000227968	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Lumpfish	MODERN SPECIES	9	C4orf48 (ENSCLMG00005006886)	nat8l (ENSCLMG00005006887)	poln (ENSCLMG00005006888)	haus3 (ENSCLMG00005006890)	ptgr1.1 (ENSCLMG00005006891)	ENSCLMG00005006893	SVEP1 (ENSCLMG00005006900)	slc7a8a (ENSCLMG00005006963) #18	nedd8 (ENSCLMG00005006975)	gmpr2 (ENSCLMG00005006979)	ENSCLMG00005007006	cideb (ENSCLMG00005007007)	tinf2 (ENSCLMG00005007009)	dhrs4 (ENSCLMG00005007010)	efs (ENSCLMG00005007035) #12	acin1b (ENSCLMG00005007037) #22	AJUBA (ENSCLMG00005007040) #27	mrpl52 (ENSCLMG00005007042) #34	mmp14a (ENSCLMG00005007043) #33	ENSCLMG00005007315 #32	ENSCLMG00005007317	ENSCLMG00005007320	ENSCLMG00005007324	ENSCLMG00005007326	ENSCLMG00005007327	ENSCLMG00005007328	ENSCLMG00005007330	ENSCLMG00005007333	oxa1l (ENSCLMG00005007335) #36	slc7a7 (ENSCLMG00005007338) #35	ENSCLMG00005007340
Stickleback	MODERN SPECIES	7	ENSGACG00000019126	ENSGACG00000019127	ENSGACG00000019130	haus3 (ENSGACG00000019137)	ENSGACG00000019138	ENSGACG00000019142	SVEP1 (ENSGACG00000019152)	slc7a8a (ENSGACG00000019161) #18	ENSGACG00000019166	gmpr2 (ENSGACG00000019167)	cideb (ENSGACG00000019177)	ENSGACG00000019178	ENSGACG00000019179	dhrs4 (ENSGACG00000019180)	efs (ENSGACG00000019194) #12	ENSGACG00000019196 #22	ENSGACG00000019197	mrpl52 (ENSGACG00000019198) #34	mmp14a (ENSGACG00000019199) #33	ENSGACG00000019201 #32	ENSGACG00000019203	ENSGACG00000019205	ENSGACG00000019210	oxa1l (ENSGACG00000019211) #36	slc7a7 (ENSGACG00000019213) #35	CCNB1IP1 (ENSGACG00000019232)	ttc5 (ENSGACG00000019234)	mettl3 (ENSGACG00000019244)	tm4sf5 (ENSGACG00000019250)	zgc:103586 (ENSGACG00000019255)	fis1 (ENSGACG00000019258)
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.j.a	ENSGT00940000177580	ENSGT00510000050415.C.i.a.b	ENSGT00940000172369	ENSGT01020000231088	ENSGT01090000260150	ENSGT00510000050415.C.j.b	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT00940000174852
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.i.a.b	ENSGT00940000172369	ENSGT01020000231088	ENSGT00510000050415.C.j.b	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.i.a.b	ENSGT00510000050415.C.j.a	ENSGT01020000231088	ENSGT00510000050415.C.j.b.e	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849
Climbing perch	MODERN SPECIES	9	poln (ENSATEG00000002032)	haus3 (ENSATEG00000002022)	ptgr1.1 (ENSATEG00000001982)	ENSATEG00000001952	ENSATEG00000001924	ENSATEG00000001901	slc7a8a (ENSATEG00000027219) #18	nedd8 (ENSATEG00000001875)	gmpr2 (ENSATEG00000001814)	ENSATEG00000001799	ENSATEG00000029824	cideb (ENSATEG00000001729)	tinf2 (ENSATEG00000001711)	dhrs4 (ENSATEG00000001699)	efs (ENSATEG00000001686) #12	acin1b (ENSATEG00000001677) #22	ENSATEG00000001635 #27	mrpl52 (ENSATEG00000001627) #34	mmp14a (ENSATEG00000001619) #33	ENSATEG00000001606 #32	ENSATEG00000001594	ENSATEG00000001542	ENSATEG00000001534	ENSATEG00000001520	ENSATEG00000001499	ENSATEG00000001490	ENSATEG00000001456	ENSATEG00000001478	ENSATEG00000028224	ENSATEG00000025871	ENSATEG00000025769
Siamese fighting fish	MODERN SPECIES	10	poln (ENSBSLG00000008944)	haus3 (ENSBSLG00000009030)	PTGR1 (ENSBSLG00000009042)	ENSBSLG00000009077	ENSBSLG00000009142	ENSBSLG00000009152	ENSBSLG00000009169	SVEP1 (ENSBSLG00000009213)	slc7a8a (ENSBSLG00000009673) #18	ENSBSLG00000010257	gmpr2 (ENSBSLG00000010276)	cideb (ENSBSLG00000010333)	tinf2 (ENSBSLG00000010338)	dhrs4 (ENSBSLG00000010342)	efs (ENSBSLG00000010348) #12	acin1b (ENSBSLG00000010352) #22	AJUBA (ENSBSLG00000010368) #27	mrpl52 (ENSBSLG00000010383) #34	mmp14a (ENSBSLG00000010388) #33	ENSBSLG00000010441 #32	ENSBSLG00000010453	ENSBSLG00000010460	ENSBSLG00000010470	ENSBSLG00000010479	ENSBSLG00000010485	ENSBSLG00000010488	ENSBSLG00000010507	ENSBSLG00000010530	ENSBSLG00000010535	ENSBSLG00000001594	ENSBSLG00000001598
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000015207	ENSMAMG00000015223	ENSMAMG00000015255	ENSMAMG00000015273	ENSMAMG00000015283	GMPR (ENSMAMG00000015295)	nedd8 (ENSMAMG00000015334)	slc7a8a (ENSMAMG00000015358) #18	ENSMAMG00000015530	ptgr1.1 (ENSMAMG00000015533)	haus3 (ENSMAMG00000015558)	poln (ENSMAMG00000015566)	nat8l (ENSMAMG00000015605)	dhrs4 (ENSMAMG00000015620)	efs (ENSMAMG00000015662) #12	acin1b (ENSMAMG00000015673) #22	ENSMAMG00000015677 #27	mrpl52 (ENSMAMG00000015697) #34	mmp14a (ENSMAMG00000015702) #33	ENSMAMG00000015739 #32	ENSMAMG00000026752	ENSMAMG00000015753	ENSMAMG00000015761	ENSMAMG00000015780	ENSMAMG00000027548	ENSMAMG00000015827	ENSMAMG00000015842	oxa1l (ENSMAMG00000015852) #36	slc7a7 (ENSMAMG00000015857) #35	ENSMAMG00000015879	ENSMAMG00000015901
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000168139	ENSGT00940000172369	ENSGT01020000231088	ENSGT00510000050415.C.j.b	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000176975	ENSGT00940000174852	ENSGT00530000063506.B #36
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00390000005342	ENSGT00390000013043	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000168139	ENSGT00940000174852	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227
Turbot	MODERN SPECIES	11	poln (ENSSMAG00000037488)	haus3 (ENSSMAG00000007239)	ptgr1.1 (ENSSMAG00000007214)	ENSSMAG00000032837	ENSSMAG00000035511	ENSSMAG00000005445	ENSSMAG00000007004	ENSSMAG00000005472	slc7a8a (ENSSMAG00000005686) #18	nedd8 (ENSSMAG00000005716)	gmpr2 (ENSSMAG00000005728)	cideb (ENSSMAG00000005751)	ENSSMAG00000005775	dhrs4 (ENSSMAG00000005811)	efs (ENSSMAG00000005866) #12	acin1b (ENSSMAG00000005897) #22	ENSSMAG00000005913 #27	mrpl52 (ENSSMAG00000037134) #34	mmp14a (ENSSMAG00000005945) #33	ENSSMAG00000005966 #32	ENSSMAG00000006034	ENSSMAG00000032738	ENSSMAG00000006042	ENSSMAG00000006076	ENSSMAG00000006091	oxa1l (ENSSMAG00000006191) #36	slc7a7 (ENSSMAG00000006212) #35	ENSSMAG00000006241	ENSSMAG00000006268	ENSSMAG00000023729	ttc5 (ENSSMAG00000006280)
Tongue sole	MODERN SPECIES		dhrs4 (ENSCSEG00000004169)	ENSCSEG00000004174	cideb (ENSCSEG00000004182)	ENSCSEG00000004184	ENSCSEG00000004195	ENSCSEG00000004198	slc7a8a (ENSCSEG00000004201) #18	SVEP1 (ENSCSEG00000004223)	ENSCSEG00000004306	txn (ENSCSEG00000004313)	ptgr1.1 (ENSCSEG00000004321)	haus3 (ENSCSEG00000004345)	poln (ENSCSEG00000004352)	nat8l (ENSCSEG00000004359)	efs (ENSCSEG00000004361) #12	acin1b (ENSCSEG00000004364) #22	AJUBA (ENSCSEG00000004370) #27	mrpl52 (ENSCSEG00000004375) #34	mmp14a (ENSCSEG00000004380) #33	ENSCSEG00000004387 #32	ENSCSEG00000004391 #20	ENSCSEG00000004393	ENSCSEG00000004397	ENSCSEG00000004407	ENSCSEG00000004410	ENSCSEG00000004413	oxa1l (ENSCSEG00000004416) #36	slc7a7 (ENSCSEG00000004419) #35	ENSCSEG00000004426	CCNB1IP1 (ENSCSEG00000004429)	ttc5 (ENSCSEG00000004435)
Carangaria_A	ANCESTRAL SPECIES	26	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.j.a	ENSGT00940000177580	ENSGT00510000050415.C.i.a.b	ENSGT00940000172369	ENSGT01020000231088	ENSGT01090000260150	ENSGT00510000050415.C.j.b	ENSGT00510000050415.C.i.a.a	ENSGT00940000176975	ENSGT00940000174852	ENSGT00530000063506.B #36
Barramundi perch	MODERN SPECIES	505			ENSLCAG00010000827	ENSLCAG00010000756	ENSLCAG00010000752	SVEP1 (ENSLCAG00010000564)	slc7a8a (ENSLCAG00010000450) #18	nedd8 (ENSLCAG00010000384)	gmpr2 (ENSLCAG00010000323)	ENSLCAG00010000317	ENSLCAG00010000313	cideb (ENSLCAG00010000308)	ENSLCAG00010000304	dhrs4 (ENSLCAG00010000269)	efs (ENSLCAG00010000234) #12	acin1b (ENSLCAG00010000222) #22	AJUBA (ENSLCAG00010000204) #27	mrpl52 (ENSLCAG00010000199) #34	mmp14a (ENSLCAG00010000187) #33	ENSLCAG00010027309 #32
Seriola	ANCESTRAL SPECIES	24	ENSGT00390000013043	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.j.b.g	ENSGT00510000050415.C.j.a	ENSGT00940000177580	ENSGT00510000050415.C.i.a.b	ENSGT01020000231088	ENSGT00510000050415.C.j.b.h.a	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000174852	ENSGT00530000063506.B #36	ENSGT00940000160134 #35
Greater amberjack	MODERN SPECIES	153	nat8l (ENSSDUG00000007134)	poln (ENSSDUG00000007096)	haus3 (ENSSDUG00000007060)	ptgr1.1 (ENSSDUG00000006999)	ENSSDUG00000006970	SVEP1 (ENSSDUG00000006724)	slc7a8a (ENSSDUG00000006665) #18	nedd8 (ENSSDUG00000006639)	gmpr2 (ENSSDUG00000006616)	ENSSDUG00000006608	ENSSDUG00000006604	cideb (ENSSDUG00000006573)	tinf2 (ENSSDUG00000006532)	dhrs4 (ENSSDUG00000006513)	efs (ENSSDUG00000006502) #12	acin1b (ENSSDUG00000006437) #22	AJUBA (ENSSDUG00000006410) #27	mrpl52 (ENSSDUG00000006399) #34	mmp14a (ENSSDUG00000006377) #33	ENSSDUG00000006345 #32	ENSSDUG00000006334	ENSSDUG00000006327	ENSSDUG00000006319	ENSSDUG00000006299	ENSSDUG00000006279	ENSSDUG00000006262	ENSSDUG00000006241	ENSSDUG00000006216	oxa1l (ENSSDUG00000006199) #36	slc7a7 (ENSSDUG00000006176) #35	ENSSDUG00000006164
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	3268	nat8l (ENSSLDG00000005249)	poln (ENSSLDG00000005206)	haus3 (ENSSLDG00000005174)	ptgr1.1 (ENSSLDG00000005023)	ENSSLDG00000004877	SVEP1 (ENSSLDG00000004558)	slc7a8a (ENSSLDG00000004477) #18	nedd8 (ENSSLDG00000004440)	gmpr2 (ENSSLDG00000004382)	ENSSLDG00000004356	ENSSLDG00000004350	cideb (ENSSLDG00000004293)	tinf2 (ENSSLDG00000004240)	dhrs4 (ENSSLDG00000004198)	efs (ENSSLDG00000004177) #12	ENSSLDG00000004163 #22	ENSSLDG00000004087 #22	AJUBA (ENSSLDG00000004032) #27	mrpl52 (ENSSLDG00000004016) #34	mmp14a (ENSSLDG00000003936) #33	ENSSLDG00000003863 #32	ENSSLDG00000003783	ENSSLDG00000003744	ENSSLDG00000003708	ENSSLDG00000003650	ENSSLDG00000003602	ENSSLDG00000003565	ENSSLDG00000003535	ENSSLDG00000003517	oxa1l (ENSSLDG00000003497) #36	slc7a7 (ENSSLDG00000003440) #35
Yellowtail amberjack	MODERN SPECIES	3268	poln (ENSSLDG00000005206)	haus3 (ENSSLDG00000005174)	ptgr1.1 (ENSSLDG00000005023)	ENSSLDG00000004877	SVEP1 (ENSSLDG00000004558)	slc7a8a (ENSSLDG00000004477) #18	nedd8 (ENSSLDG00000004440)	gmpr2 (ENSSLDG00000004382)	ENSSLDG00000004356	ENSSLDG00000004350	cideb (ENSSLDG00000004293)	tinf2 (ENSSLDG00000004240)	dhrs4 (ENSSLDG00000004198)	efs (ENSSLDG00000004177) #12	ENSSLDG00000004163 #22	ENSSLDG00000004087 #22	AJUBA (ENSSLDG00000004032) #27	mrpl52 (ENSSLDG00000004016) #34	mmp14a (ENSSLDG00000003936) #33	ENSSLDG00000003863 #32	ENSSLDG00000003783	ENSSLDG00000003744	ENSSLDG00000003708	ENSSLDG00000003650	ENSSLDG00000003602	ENSSLDG00000003565	ENSSLDG00000003535	ENSSLDG00000003517	oxa1l (ENSSLDG00000003497) #36	slc7a7 (ENSSLDG00000003440) #35	ENSSLDG00000003393
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000163988.i.b.b	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000176975	ENSGT00940000174852	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00940000175830	ENSGT00510000050415.C.j.b	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000176975	ENSGT00510000050415.C.i.a.a	ENSGT01030000239687	ENSGT00940000174852	ENSGT00510000050415.C.j.b.a	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849
Pomacentridae	ANCESTRAL SPECIES	37	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00980000198821	ENSGT00390000018596.A.a.b	ENSGT00940000176132	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.j.a	ENSGT00940000177580
Bicolor damselfish	MODERN SPECIES	544	C4orf48 (ENSSPAG00000009044)	nat8l (ENSSPAG00000009031)	poln (ENSSPAG00000008995)	haus3 (ENSSPAG00000008978)	ptgr1.1 (ENSSPAG00000008961)	ENSSPAG00000008951	SVEP1 (ENSSPAG00000008728)	slc7a8a (ENSSPAG00000008658) #18	nedd8 (ENSSPAG00000008638)	gmpr2 (ENSSPAG00000008596)	cideb (ENSSPAG00000008571)	tinf2 (ENSSPAG00000008548)	dhrs4 (ENSSPAG00000008523)	efs (ENSSPAG00000008509) #12	ENSSPAG00000008500	acin1b (ENSSPAG00000008478) #22	ENSSPAG00000008454 #27	mrpl52 (ENSSPAG00000008444) #34	mmp14a (ENSSPAG00000008404) #33	ENSSPAG00000008348 #32	ENSSPAG00000008298	ENSSPAG00000008272	ENSSPAG00000008262	ENSSPAG00000008254	ENSSPAG00000008239	ENSSPAG00000008222
Pomacentridae_A	ANCESTRAL SPECIES	43	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a.g	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00980000198821	ENSGT00390000018596.A.a.b	ENSGT00940000176132	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00940000163988.i.a.h	ENSGT00510000050415.C.j.a	ENSGT00940000177580
Spiny chromis	MODERN SPECIES	1623												cideb (ENSAPOG00000019359)	tinf2 (ENSAPOG00000000794)	dhrs4 (ENSAPOG00000019297)	efs (ENSAPOG00000019243) #12	acin1b (ENSAPOG00000019226) #22	AJUBA (ENSAPOG00000019211) #27	mrpl52 (ENSAPOG00000019164) #34	mmp14a (ENSAPOG00000019143) #33	ENSAPOG00000019080 #32	ENSAPOG00000019019
Amphiprion	ANCESTRAL SPECIES	50	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a.g	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00980000198821	ENSGT00390000018596.A.a.b	ENSGT00940000176132	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00940000163988.i.a.h	ENSGT00510000050415.C.j.a	ENSGT00940000177580
Clown anemonefish	MODERN SPECIES	748	C4orf48 (ENSAOCG00000019175)	nat8l (ENSAOCG00000019153)	haus3 (ENSAOCG00000001369)	ptgr1.1 (ENSAOCG00000019115)	ENSAOCG00000018957	SVEP1 (ENSAOCG00000019063)	slc7a8a (ENSAOCG00000018891) #18	nedd8 (ENSAOCG00000018843)	ENSAOCG00000018802	ENSAOCG00000018753	cideb (ENSAOCG00000018741)	ENSAOCG00000018725	tinf2 (ENSAOCG00000018713)	dhrs4 (ENSAOCG00000018685)	efs (ENSAOCG00000018663) #12	acin1b (ENSAOCG00000018649) #22	ENSAOCG00000018617 #27
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	15	nat8l (ENSAPEG00000004423)	poln (ENSAPEG00000004449)	haus3 (ENSAPEG00000004509)	ptgr1.1 (ENSAPEG00000004519)	ENSAPEG00000004542	SVEP1 (ENSAPEG00000004588)	slc7a8a (ENSAPEG00000004897) #18	nedd8 (ENSAPEG00000004958)	gmpr2 (ENSAPEG00000004994)	ENSAPEG00000005030	cideb (ENSAPEG00000005035)	ENSAPEG00000005050	dhrs4 (ENSAPEG00000005088)	efs (ENSAPEG00000005099) #12	ENSAPEG00000005111 #22	ENSAPEG00000005134 #22	AJUBA (ENSAPEG00000005258) #27	ENSAPEG00000005295	ENSAPEG00000005430	mrpl52 (ENSAPEG00000005483) #34	mmp14a (ENSAPEG00000005500) #33	ENSAPEG00000005652 #32	ENSAPEG00000005672 #20	ENSAPEG00000005689	ENSAPEG00000005718	ENSAPEG00000005729	ENSAPEG00000005748	STIM2 (ENSAPEG00000005770)	tbc1d19 (ENSAPEG00000005880)	CCKAR (ENSAPEG00000005946)	RBPJ (ENSAPEG00000006063)
Orange clownfish	MODERN SPECIES	15	C4orf48 (ENSAPEG00000004397)	nat8l (ENSAPEG00000004423)	poln (ENSAPEG00000004449)	haus3 (ENSAPEG00000004509)	ptgr1.1 (ENSAPEG00000004519)	ENSAPEG00000004542	SVEP1 (ENSAPEG00000004588)	slc7a8a (ENSAPEG00000004897) #18	nedd8 (ENSAPEG00000004958)	gmpr2 (ENSAPEG00000004994)	ENSAPEG00000005030	cideb (ENSAPEG00000005035)	ENSAPEG00000005050	dhrs4 (ENSAPEG00000005088)	efs (ENSAPEG00000005099) #12	ENSAPEG00000005111 #22	ENSAPEG00000005134 #22	AJUBA (ENSAPEG00000005258) #27	ENSAPEG00000005295	ENSAPEG00000005430	mrpl52 (ENSAPEG00000005483) #34	mmp14a (ENSAPEG00000005500) #33	ENSAPEG00000005652 #32	ENSAPEG00000005672 #20	ENSAPEG00000005689	ENSAPEG00000005718	ENSAPEG00000005729	ENSAPEG00000005748	STIM2 (ENSAPEG00000005770)	tbc1d19 (ENSAPEG00000005880)	CCKAR (ENSAPEG00000005946)
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.b	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00940000175830	ENSGT00510000050415.C.j.b.a	ENSGT00940000174573	ENSGT00510000050415.C.j.a	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Midas cichlid	MODERN SPECIES	1176											cideb (ENSACIG00000006344)	tinf2 (ENSACIG00000006319)	dhrs4 (ENSACIG00000006304)	efs (ENSACIG00000006255) #12	ENSACIG00000006242	acin1b (ENSACIG00000006212) #22	AJUBA (ENSACIG00000006180) #27	mrpl52 (ENSACIG00000006164) #34	mmp14a (ENSACIG00000006147) #33	ENSACIG00000006133 #32	ENSACIG00000006114
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00940000163988.i.b.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229.l	ENSGT00940000163587.a.a	ENSGT00940000175229.k.b	ENSGT00940000175229.k.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000175830	ENSGT00510000050415.C.j.b.a.a.b	ENSGT00510000050415.C.i.a.b.n.a	ENSGT00940000176975.b	ENSGT00940000174852.d	ENSGT00510000050415.C.i.a.a.a	ENSGT00980000198800	ENSGT00940000176975.a	ENSGT00510000050415.C.i.a.a.b	ENSGT00510000050415.C.i.a.b.n.b	ENSGT00940000174852.c.b
Nile tilapia	MODERN SPECIES	15	ENSONIG00000029575	PTGR1 (ENSONIG00000036026)	ENSONIG00000012900	SVEP1 (ENSONIG00000012887)	slc7a8a (ENSONIG00000012881) #18	nedd8 (ENSONIG00000028488)	ENSONIG00000031021	gmpr2 (ENSONIG00000042292)	ENSONIG00000037239	ENSONIG00000033454	ENSONIG00000033513	cideb (ENSONIG00000017960)	tinf2 (ENSONIG00000037719)	dhrs4 (ENSONIG00000038358)	efs (ENSONIG00000037917) #12	acin1b (ENSONIG00000017952) #22	AJUBA (ENSONIG00000017951) #27	mrpl52 (ENSONIG00000017950) #34	mmp14a (ENSONIG00000017945) #33	ENSONIG00000017944 #32	ENSONIG00000042692 #20	ENSONIG00000029347	ENSONIG00000028736	ENSONIG00000029081	ENSONIG00000032532	ENSONIG00000007150	ENSONIG00000028447	ENSONIG00000034438	ENSONIG00000028367	ENSONIG00000009363	ENSONIG00000038281
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00940000163988.i.b.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229.l	ENSGT00940000163587.a.a	ENSGT00940000175229.k.b	ENSGT00940000175229.k.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000175830	ENSGT01020000231088	ENSGT00510000050415.C.i.a.b.n.a	ENSGT01100000265171	ENSGT00510000050415.C.j.b.a.a.b	ENSGT00510000050415.C.j.b.a.a.a.b	ENSGT00940000174573	ENSGT00510000050415.C.j.a	ENSGT00940000177580	ENSGT00530000063506.B #36	ENSGT00940000160134 #35
Haplochromini	ANCESTRAL SPECIES	44	ENSGT00940000163988.i.b.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229.l	ENSGT00940000163587.a.a	ENSGT00940000175229.k.b	ENSGT00940000175229.k.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000175830	ENSGT01020000231088.a	ENSGT00510000050415.C.i.a.b.n.a.b	ENSGT01020000231088.b	ENSGT00510000050415.C.i.a.b.n.a.a.b	ENSGT00940000176975.b	ENSGT00940000174852.d	ENSGT00510000050415.C.i.a.a.a.a	ENSGT00980000198800.a.b
Burton s mouthbrooder	MODERN SPECIES	965											cideb (ENSHBUG00000020349)	ENSHBUG00000020338	tinf2 (ENSHBUG00000000619)	dhrs4 (ENSHBUG00000020314)	efs (ENSHBUG00000020283) #12	acin1b (ENSHBUG00000020274) #22	AJUBA (ENSHBUG00000020192) #27	mrpl52 (ENSHBUG00000000610) #34	mmp14a (ENSHBUG00000020157) #33	ENSHBUG00000020124 #32	ENSHBUG00000020116	ENSHBUG00000020106	ENSHBUG00000000597	ENSHBUG00000020086
Haplochromini_A	ANCESTRAL SPECIES	47	ENSGT00940000163988.i.b.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229.l	ENSGT00940000163587.a.a	ENSGT00940000175229.k.b	ENSGT00940000175229.k.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000175830	ENSGT00510000050415.C.i.a.b.n.a.b
P. nyererei	MODERN SPECIES	570	ENSPNYG00000004730	ENSPNYG00000004746	ENSPNYG00000004766	ENSPNYG00000004805	ENSPNYG00000004819	ENSPNYG00000004842	SVEP1 (ENSPNYG00000004870)	slc7a8a (ENSPNYG00000004984) #18	nedd8 (ENSPNYG00000005087)	ENSPNYG00000005110	cideb (ENSPNYG00000005148)	ENSPNYG00000005187	ENSPNYG00000005203	dhrs4 (ENSPNYG00000005221)	efs (ENSPNYG00000005242) #12	acin1b (ENSPNYG00000005309) #22	AJUBA (ENSPNYG00000005341) #27	mrpl52 (ENSPNYG00000005363) #34	mmp14a (ENSPNYG00000005387) #33	ENSPNYG00000005437 #32	ENSPNYG00000005453
Haplochromini_B	ANCESTRAL SPECIES	25											ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000175830	ENSGT01020000230664.b.a.a.a	ENSGT00940000163711.a.a.b.v.a.a.b	ENSGT00940000162700.e.a.a.b.a.a.d.c.a.a	ENSGT00510000050415.C.i.a.b.n.a.b	ENSGT00940000176975.b	ENSGT00940000174852.d	ENSGT00510000050415.C.i.a.a.a.a.b	ENSGT00980000198800.a.a	ENSGT00940000176975.a.a.b	ENSGT00940000176975.a.a.a
Eastern happy	MODERN SPECIES	15	ENSACLG00000011607	ENSACLG00000011600	ENSACLG00000011591	ENSACLG00000011573	ENSACLG00000011565	ENSACLG00000011557	ENSACLG00000011229	ENSACLG00000011221	ENSACLG00000011217	ENSACLG00000011209	ENSACLG00000011204	cideb (ENSACLG00000011189)	tinf2 (ENSACLG00000011172)	dhrs4 (ENSACLG00000011161)	efs (ENSACLG00000011128) #12	acin1b (ENSACLG00000011103) #22	AJUBA (ENSACLG00000011074) #27	mrpl52 (ENSACLG00000011063) #34	mmp14a (ENSACLG00000011022) #33	ENSACLG00000010986 #32	ENSACLG00000010971	ENSACLG00000010892	ENSACLG00000010879	ENSACLG00000010865	ENSACLG00000010821	ENSACLG00000010808	ENSACLG00000010802	ENSACLG00000010769	ENSACLG00000010728	ENSACLG00000010721	ENSACLG00000010708
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1106	nat8l (ENSMZEG00005021007)	C4orf48 (ENSMZEG00005021006)	nelfa (ENSMZEG00005021004)	faah2b (ENSMZEG00005021002)	TESK1 (ENSMZEG00005020999)	pik3c3 (ENSMZEG00005020994)	MSMP (ENSMZEG00005020991)	rgp1 (ENSMZEG00005020987)	GBA2 (ENSMZEG00005020979)	ENSMZEG00005020977	cideb (ENSMZEG00005020973)	tinf2 (ENSMZEG00005020970)	dhrs4 (ENSMZEG00005020967)	efs (ENSMZEG00005020965) #12	ENSMZEG00005020962 #22	ENSMZEG00005020960 #22	AJUBA (ENSMZEG00005020956) #27	mrpl52 (ENSMZEG00005020953) #34	mmp14a (ENSMZEG00005020950) #33	ENSMZEG00005020945 #32	ENSMZEG00005020943	ENSMZEG00005020940	ENSMZEG00005020936	ENSMZEG00005020932	ENSMZEG00005020931	cxcl19 (ENSMZEG00005020929)	trmt10b (ENSMZEG00005020927)	ENSMZEG00005020916	ENSMZEG00005020914	ino80b (ENSMZEG00005020912)	intu (ENSMZEG00005020907)
Zebra mbuna	MODERN SPECIES	1106	ENSMZEG00005021008	nat8l (ENSMZEG00005021007)	C4orf48 (ENSMZEG00005021006)	nelfa (ENSMZEG00005021004)	faah2b (ENSMZEG00005021002)	TESK1 (ENSMZEG00005020999)	pik3c3 (ENSMZEG00005020994)	MSMP (ENSMZEG00005020991)	rgp1 (ENSMZEG00005020987)	GBA2 (ENSMZEG00005020979)	ENSMZEG00005020977	cideb (ENSMZEG00005020973)	tinf2 (ENSMZEG00005020970)	dhrs4 (ENSMZEG00005020967)	efs (ENSMZEG00005020965) #12	ENSMZEG00005020962 #22	ENSMZEG00005020960 #22	AJUBA (ENSMZEG00005020956) #27	mrpl52 (ENSMZEG00005020953) #34	mmp14a (ENSMZEG00005020950) #33	ENSMZEG00005020945 #32	ENSMZEG00005020943	ENSMZEG00005020940	ENSMZEG00005020936	ENSMZEG00005020932	ENSMZEG00005020931	cxcl19 (ENSMZEG00005020929)	trmt10b (ENSMZEG00005020927)	ENSMZEG00005020916	ENSMZEG00005020914	ino80b (ENSMZEG00005020912)
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	582										ENSNBRG00000023457	cideb (ENSNBRG00000023454)	tinf2 (ENSNBRG00000023450)	dhrs4 (ENSNBRG00000023446)	efs (ENSNBRG00000023443) #12	ENSNBRG00000023440 #22	acin1b (ENSNBRG00000023432) #22	AJUBA (ENSNBRG00000023426) #27	mrpl52 (ENSNBRG00000023422) #34	mmp14a (ENSNBRG00000023417) #33	ENSNBRG00000023412 #32	ENSNBRG00000023409	ENSNBRG00000023399	ENSNBRG00000023396	ENSNBRG00000023388
Lyretail cichlid	MODERN SPECIES	582											ENSNBRG00000023457	cideb (ENSNBRG00000023454)	tinf2 (ENSNBRG00000023450)	dhrs4 (ENSNBRG00000023446)	efs (ENSNBRG00000023443) #12	ENSNBRG00000023440 #22	acin1b (ENSNBRG00000023432) #22	AJUBA (ENSNBRG00000023426) #27	mrpl52 (ENSNBRG00000023422) #34	mmp14a (ENSNBRG00000023417) #33	ENSNBRG00000023412 #32	ENSNBRG00000023409	ENSNBRG00000023399	ENSNBRG00000023396	ENSNBRG00000023388
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000174852	ENSGT00510000050415.C.j.b.c	ENSGT00940000175830	ENSGT00940000176975	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00510000050415.C.j.b.d	ENSGT00530000063506.B #36	ENSGT00940000160134 #35
Oryzias	ANCESTRAL SPECIES	29	ENSGT00940000154810.z.b	ENSGT00940000154810.z.a	ENSGT00390000011904	ENSGT00940000154810.y	ENSGT00940000163988.i.b.a	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT01030000235653	ENSGT00510000050415.C.j.b.c.c
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00940000154810.z.b.a	ENSGT00940000154810.z.b.b	ENSGT00940000154810.z.a	ENSGT00390000011904	ENSGT00940000154810.y	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000167744.a.b	ENSGT00510000050415.C.i.a.a.g	ENSGT01090000260150	ENSGT00510000050415.C.i.a.a.h	ENSGT01100000265004	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058
Indian medaka	MODERN SPECIES	19	ENSOMEG00000015546	ENSOMEG00000015531	haus3 (ENSOMEG00000015486)	ENSOMEG00000015465	ENSOMEG00000015437	ENSOMEG00000015373	SVEP1 (ENSOMEG00000015348)	slc7a8a (ENSOMEG00000015260) #18	nedd8 (ENSOMEG00000015223)	gmpr2 (ENSOMEG00000015207)	ENSOMEG00000001028	cideb (ENSOMEG00000015157)	tinf2 (ENSOMEG00000015132)	dhrs4 (ENSOMEG00000015110)	efs (ENSOMEG00000015081) #12	acin1b (ENSOMEG00000015053) #22	AJUBA (ENSOMEG00000001012) #27	ENSOMEG00000014928	mrpl52 (ENSOMEG00000014897) #34	mmp14a (ENSOMEG00000014869) #33	ENSOMEG00000014804 #32	ENSOMEG00000014689	ENSOMEG00000014594	ENSOMEG00000014575	ENSOMEG00000014562	ENSOMEG00000014531	ENSOMEG00000014492	ENSOMEG00000014459	ENSOMEG00000014439	ENSOMEG00000014404	ENSOMEG00000014394
Javanese ricefish	MODERN SPECIES	9	PTGR1 (ENSOJAG00000002833)	ENSOJAG00000002857	ENSOJAG00000002867	haus3 (ENSOJAG00000002879)	ENSOJAG00000002882	slc7a8a (ENSOJAG00000003093) #18	ENSOJAG00000003555	nedd8 (ENSOJAG00000003576)	gmpr2 (ENSOJAG00000003633)	ENSOJAG00000003670	ENSOJAG00000003678	cideb (ENSOJAG00000003689)	ENSOJAG00000003716	dhrs4 (ENSOJAG00000003766)	efs (ENSOJAG00000003865) #12	acin1b (ENSOJAG00000003910) #22	AJUBA (ENSOJAG00000004126) #27	mrpl52 (ENSOJAG00000004164) #34	mmp14a (ENSOJAG00000004232) #33	ENSOJAG00000004718 #32	ENSOJAG00000004740	ENSOJAG00000004755	ENSOJAG00000004788	ENSOJAG00000004835	ENSOJAG00000004870	ENSOJAG00000004878	ENSOJAG00000004908	ENSOJAG00000004915	ENSOJAG00000004922	ENSOJAG00000004950	ENSOJAG00000004958
Oryzias_a	ANCESTRAL SPECIES	33	ENSGT00940000154810.z.b	ENSGT00940000154810.z.a	ENSGT00390000011904	ENSGT00940000154810.y	ENSGT00940000163988.i.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000165806	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT01030000235653	ENSGT00510000050415.C.j.b.c.c
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000016528	ENSORLG00000024580	haus3 (ENSORLG00000007604)	ENSORLG00000023442	ENSORLG00000007589	ENSORLG00000007575	SVEP1 (ENSORLG00000007547)	slc7a8a (ENSORLG00000007494) #18	ENSORLG00000024017	gmpr2 (ENSORLG00000007456)	ENSORLG00000022635	cideb (ENSORLG00000007438)	tinf2 (ENSORLG00000007422)	dhrs4 (ENSORLG00000022608)	efs (ENSORLG00000029529) #12	acin1b (ENSORLG00000007365) #22	ajuba (ENSORLG00000007329) #27	ENSORLG00000022045	ENSORLG00000023045	mrpl52 (ENSORLG00000023145) #34	mmp14a (ENSORLG00000007318) #33	ENSORLG00000007300 #32	ENSORLG00000024839	ENSORLG00000024441	ENSORLG00000024264	ENSORLG00000007290	ENSORLG00000028605	ENSORLG00000026465	ENSORLG00000024719	ENSORLG00000022117	ENSORLG00000022625
Chinese medaka	MODERN SPECIES	388	ENSOSIG00000007654	PTGR1 (ENSOSIG00000007640)	haus3 (ENSOSIG00000007634)	ENSOSIG00000007630	ENSOSIG00000007627	SVEP1 (ENSOSIG00000007091)	slc7a8a (ENSOSIG00000006503) #18	ENSOSIG00000006446	gmpr2 (ENSOSIG00000006435)	ENSOSIG00000006433	ENSOSIG00000006432	cideb (ENSOSIG00000006430)	ENSOSIG00000006429	dhrs4 (ENSOSIG00000006425)	efs (ENSOSIG00000006422) #12	acin1b (ENSOSIG00000006420) #22	AJUBA (ENSOSIG00000006418) #27	mrpl52 (ENSOSIG00000006414) #34	mmp14a (ENSOSIG00000005644) #33	ENSOSIG00000005635 #32	ENSOSIG00000005632 #20	ENSOSIG00000005627
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000174852	ENSGT00940000175830	ENSGT00510000050415.C.j.b.c.b	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150	ENSGT00510000050415.C.j.b.d	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b
Aplocheiloidei	ANCESTRAL SPECIES	55	ENSGT00950000182932.B.b	ENSGT00940000159015	ENSGT00390000011904	ENSGT00940000154810	ENSGT00940000163988.i.b.b	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT01030000234583.a.a.c.b.a.b.c.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.i.a.b	ENSGT00940000174852	ENSGT00510000050415.C.i.a.a	ENSGT01090000260150
Mangrove rivulus	MODERN SPECIES	190	nelfa (ENSKMAG00000012420)	C4orf48 (ENSKMAG00000012415)	nat8l (ENSKMAG00000012401)	haus3 (ENSKMAG00000012387)	ptgr1.1 (ENSKMAG00000012354)	ENSKMAG00000012325	SVEP1 (ENSKMAG00000012226)	slc7a8a (ENSKMAG00000012162) #18	nedd8 (ENSKMAG00000012146)	gmpr2 (ENSKMAG00000012118)	ENSKMAG00000012106	cideb (ENSKMAG00000012085)	tinf2 (ENSKMAG00000012037)	dhrs4 (ENSKMAG00000011996)	efs (ENSKMAG00000011970) #12	acin1b (ENSKMAG00000011943) #22	AJUBA (ENSKMAG00000011919) #27	mrpl52 (ENSKMAG00000011899) #34	mmp14a (ENSKMAG00000011883) #33	ENSKMAG00000011841 #32	ENSKMAG00000011818	ENSKMAG00000011804	ENSKMAG00000011795	ENSKMAG00000011790	ENSKMAG00000011782	ENSKMAG00000011772	ENSKMAG00000011747	ENSKMAG00000011723	ENSKMAG00000011699	ENSKMAG00000011688
Turquoise killifish	MODERN SPECIES	1613	haus3 (ENSNFUG00015004980)	ENSNFUG00015004994	PTGR1 (ENSNFUG00015005021)	TXNDC2 (ENSNFUG00015005045)	SVEP1 (ENSNFUG00015005269)	ENSNFUG00015005824	ENSNFUG00015005994	slc7a8a (ENSNFUG00015006016) #18	ENSNFUG00015006298	GMPR2 (ENSNFUG00015006315)	WU (ENSNFUG00015006320)	cideb (ENSNFUG00015006322)	TINF2 (ENSNFUG00015006329)	dhrs4 (ENSNFUG00015000073)	CR388231.3 (ENSNFUG00015000088) #12	acin1b (ENSNFUG00015000107) #22	AJUBA (ENSNFUG00015000137) #27	MRPL52 (ENSNFUG00015000153) #34	MMP14A (ENSNFUG00015000298) #33	LRP10 (ENSNFUG00015000444) #32	Nfu_g_1_003722 (ENSNFUG00015000451)	CR788286.1 (ENSNFUG00015000456)	ENSNFUG00015000464	ENSNFUG00015000471	ENSNFUG00015000476	ENSNFUG00015000495	ENSNFUG00015000509	OXA1L (ENSNFUG00015000520) #36	SLC7A7 (ENSNFUG00015000574) #35	ENSNFUG00015000631	CCNB1IP1 (ENSNFUG00015000639)
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00940000170321	ENSGT00940000154810.w	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000168139	ENSGT00940000175830	ENSGT00510000050415.C.j.b.c.b	ENSGT00510000050415.C.i.a.a.d	ENSGT01090000260150.f	ENSGT01090000260520.b	ENSGT00510000050415.C.i.a.a.c	ENSGT01090000260150.e.a	ENSGT00940000174852
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00390000011904	ENSGT00940000154810.x	ENSGT00940000154810.w	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT01100000265783	ENSGT01090000260150.e.b	ENSGT00510000050415.C.j.b.c.b	ENSGT00510000050415.C.i.a.a.d	ENSGT00510000050415.C.i.a.a.c	ENSGT01090000260150.e.a	ENSGT00940000174852	ENSGT00510000050415.C.j.b.d	ENSGT00530000063506.B #36
Poecilia	ANCESTRAL SPECIES	32	ENSGT00390000011904	ENSGT00940000154810.x	ENSGT00940000154810.w	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT01030000234583.a.a.c.b.a.b.c.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT01100000265783	ENSGT01090000260150.e.b	ENSGT00510000050415.C.j.b.c.b.a.b	ENSGT00940000175830	ENSGT00510000050415.C.j.b.c.b.a.a	ENSGT00510000050415.C.i.a.a.d.e	ENSGT00510000050415.C.i.a.a.c	ENSGT01090000260150.e.a	ENSGT00940000174852
NAME_6	ANCESTRAL SPECIES	76	ENSGT00390000011904	ENSGT00940000154810.x	ENSGT00940000154810.w	ENSGT00940000163988.i.a	ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT01030000234583.a.a.c.b.a.b.c.a	ENSGT00940000176132	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00940000163573 #20	ENSGT00510000050415.C.i.a.b	ENSGT00940000168139
Sailfin molly	MODERN SPECIES	111	haus3 (ENSPLAG00000021736)	PTGR1 (ENSPLAG00000021731)	ENSPLAG00000021711	ENSPLAG00000021679	ENSPLAG00000021675	SVEP1 (ENSPLAG00000021660)	slc7a8a (ENSPLAG00000021534) #18	nedd8 (ENSPLAG00000021505)	gmpr2 (ENSPLAG00000021491)	ENSPLAG00000021462	ENSPLAG00000021449	cideb (ENSPLAG00000021444)	tinf2 (ENSPLAG00000021427)	dhrs4 (ENSPLAG00000021419)	efs (ENSPLAG00000021384) #12	acin1b (ENSPLAG00000021380) #22	AJUBA (ENSPLAG00000021363) #27	mrpl52 (ENSPLAG00000021357) #34	mmp14a (ENSPLAG00000021346) #33	ENSPLAG00000021317 #32	ENSPLAG00000021277	ENSPLAG00000000458	ENSPLAG00000021262
Amazon molly	MODERN SPECIES	399	nat8l (ENSPFOG00000023141)	poln (ENSPFOG00000007246)	haus3 (ENSPFOG00000007432)	PTGR1 (ENSPFOG00000007459)	ENSPFOG00000007493	ENSPFOG00000024676	ENSPFOG00000007567	SVEP1 (ENSPFOG00000007600)	slc7a8a (ENSPFOG00000008767) #18	gmpr2 (ENSPFOG00000008935)	ENSPFOG00000022603	cideb (ENSPFOG00000009017)	tinf2 (ENSPFOG00000009052)	dhrs4 (ENSPFOG00000009099)	efs (ENSPFOG00000009177) #12	acin1b (ENSPFOG00000009202) #22	AJUBA (ENSPFOG00000009281) #27	mrpl52 (ENSPFOG00000009334) #34	mmp14a (ENSPFOG00000009342) #33	ENSPFOG00000009619 #32	ENSPFOG00000009690 #20	ENSPFOG00000009722	ENSPFOG00000023919	ENSPFOG00000024354	ENSPFOG00000009778
Guppy	MODERN SPECIES	444	PTGR1 (ENSPREG00000004164)	ENSPREG00000004189	ENSPREG00000004236	ENSPREG00000004369	ENSPREG00000004397	SVEP1 (ENSPREG00000004460)	slc7a8a (ENSPREG00000004530) #18	nedd8 (ENSPREG00000004560)	gmpr2 (ENSPREG00000004578)	ENSPREG00000004596	ENSPREG00000004610	cideb (ENSPREG00000004615)	tinf2 (ENSPREG00000004631)	dhrs4 (ENSPREG00000004686)	efs (ENSPREG00000004777) #12	acin1b (ENSPREG00000004790) #22	AJUBA (ENSPREG00000004806) #27	mrpl52 (ENSPREG00000004842) #34	mmp14a (ENSPREG00000004863) #33	ENSPREG00000004946 #32	ENSPREG00000004971	ENSPREG00000004998	ENSPREG00000005017	ENSPREG00000005024	ENSPREG00000005036	ENSPREG00000005056	ENSPREG00000005078	ENSPREG00000005088	ENSPREG00000005114	ENSPREG00000005123	ENSPREG00000005149
Platyfish	MODERN SPECIES	5	poln (ENSXMAG00000001752)	haus3 (ENSXMAG00000001748)	ENSXMAG00000001742	PTGR1 (ENSXMAG00000001740)	ENSXMAG00000001739	ENSXMAG00000028802	ENSXMAG00000001729	slc7a8a (ENSXMAG00000001695) #18	nedd8 (ENSXMAG00000028608)	gmpr2 (ENSXMAG00000001666)	ENSXMAG00000025658	cideb (ENSXMAG00000026481)	tinf2 (ENSXMAG00000001654)	dhrs4 (ENSXMAG00000028540)	efs (ENSXMAG00000022900) #12	acin1b (ENSXMAG00000001598) #22	AJUBA (ENSXMAG00000001581) #27	mrpl52 (ENSXMAG00000001578) #34	mmp14a (ENSXMAG00000001547) #33	ENSXMAG00000001533 #32	ENSXMAG00000023861	ENSXMAG00000025166	ENSXMAG00000021163	ENSXMAG00000023739	ENSXMAG00000022557	ENSXMAG00000029884	ENSXMAG00000029695	ENSXMAG00000024803	ENSXMAG00000001528	ENSXMAG00000028883	ENSXMAG00000027909
NAME_4	ANCESTRAL SPECIES	118					ENSGT00940000163988.i.b.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00940000175229	ENSGT00390000018596.A.a.b	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234.b	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.i.a.b	ENSGT00940000168459	ENSGT00510000050415.C.j.b.c.b	ENSGT00510000050415.C.i.a.a.d	ENSGT01090000260150.f	ENSGT00510000050415.C.j.b.d	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227
Sheepshead minnow	MODERN SPECIES	1360								slc7a8a (ENSCVAG00000009955) #18	nedd8 (ENSCVAG00000009923)	gmpr2 (ENSCVAG00000009909)	ENSCVAG00000009882	cideb (ENSCVAG00000009877)	tinf2 (ENSCVAG00000009864)	dhrs4 (ENSCVAG00000009858)	efs (ENSCVAG00000000761) #12	acin1b (ENSCVAG00000009841) #22	ENSCVAG00000009826 #27
Mummichog	MODERN SPECIES	435				ENSFHEG00000020601	SVEP1 (ENSFHEG00000020551)	slc7a8a (ENSFHEG00000000856) #18	nedd8 (ENSFHEG00000020364)	gmpr2 (ENSFHEG00000020343)	ENSFHEG00000020300	ENSFHEG00000020288	cideb (ENSFHEG00000020263)	tinf2 (ENSFHEG00000020239)	dhrs4 (ENSFHEG00000020172)	efs (ENSFHEG00000019666) #12	ENSFHEG00000019655	ENSFHEG00000019641 #22	AJUBA (ENSFHEG00000019560) #27	mrpl52 (ENSFHEG00000019528) #34	mmp14a (ENSFHEG00000019517) #33	ENSFHEG00000019478 #32	ENSFHEG00000019445	ENSFHEG00000019433	ENSFHEG00000019431	ENSFHEG00000019410	ENSFHEG00000019405	ENSFHEG00000019400	ENSFHEG00000019390	ENSFHEG00000019366
Pinecone sodierfish	MODERN SPECIES	9	C4orf48 (ENSMMDG00005015704)	nat8l (ENSMMDG00005015707)	poln (ENSMMDG00005015709)	haus3 (ENSMMDG00005015713)	ptgr1.1 (ENSMMDG00005015715)	ENSMMDG00005015716	SVEP1 (ENSMMDG00005015720)	slc7a8a (ENSMMDG00005015741) #18	nedd8 (ENSMMDG00005012506)	gmpr2 (ENSMMDG00005012508)	ENSMMDG00005012509	cideb (ENSMMDG00005012510)	tinf2 (ENSMMDG00005012512)	dhrs4 (ENSMMDG00005012513)	efs (ENSMMDG00005012521) #12	acin1b (ENSMMDG00005012525) #22	AJUBA (ENSMMDG00005012529) #27	mrpl52 (ENSMMDG00005012531) #34	mmp14a (ENSMMDG00005012533) #33	ENSMMDG00005012535	ENSMMDG00005012536	ENSMMDG00005012538	ENSMMDG00005012541	oxa1l (ENSMMDG00005012543) #36	slc7a7 (ENSMMDG00005012554) #35	ENSMMDG00005012555	CCNB1IP1 (ENSMMDG00005012557)	ttc5 (ENSMMDG00005012558)	mettl3 (ENSMMDG00005012561)	ENSMMDG00005012563	tm4sf5 (ENSMMDG00005012564)
Cod	MODERN SPECIES	8	ENSGMOG00000027971	haus3 (ENSGMOG00000015554)	ENSGMOG00000015527	ENSGMOG00000015577	ENSGMOG00000015588	slc7a8a (ENSGMOG00000015687) #18	nedd8 (ENSGMOG00000030264)	gmpr2 (ENSGMOG00000015719)	ENSGMOG00000025143	ENSGMOG00000035812	ENSGMOG00000025261	cideb (ENSGMOG00000015752)	ENSGMOG00000015761	dhrs4 (ENSGMOG00000015785)	efs (ENSGMOG00000032763) #12	acin1b (ENSGMOG00000029768) #22	ENSGMOG00000026505 #27	mrpl52 (ENSGMOG00000035794) #34	mmp14a (ENSGMOG00000015871) #33	ENSGMOG00000031874 #32	ENSGMOG00000005514	ENSGMOG00000029579	ENSGMOG00000006702	faah2b (ENSGMOG00000003833)	ENSGMOG00000017707	pik3c3 (ENSGMOG00000017662)	ENSGMOG00000017648	rgp1 (ENSGMOG00000017640)	ENSGMOG00000017609	ENSGMOG00000017454	ugt5g1 (ENSGMOG00000017450)
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00390000011904.e	ENSGT00940000154810	ENSGT00940000163988.i.a	ENSGT00940000154259.a	ENSGT00940000156061	ENSGT00940000158278.e.a #18	ENSGT00940000155856.cb	ENSGT00940000159574	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b	ENSGT01050000245396	ENSGT00400000022326.a	ENSGT00940000164342	ENSGT00950000183008.a.a.b #12	ENSGT01030000235234	ENSGT00710000106790.w #22	ENSGT00940000160978 #27	ENSGT00390000005763 #34	ENSGT00940000157808.h #33	ENSGT00940000160783 #32	ENSGT00510000050415.C.l	ENSGT00530000063506.B #36	ENSGT00940000160134 #35	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a	ENSGT00940000160414.c	ENSGT00940000157623
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	53	ENSGT00390000013043	ENSGT00950000182932.B.b.c	ENSGT00940000159015	ENSGT00390000011904.e	ENSGT00940000154810.n.b.a	ENSGT00940000154259.a.a	ENSGT00940000156061.d	ENSGT00940000158278.e.a.f #18	ENSGT00940000155856.cb.c	ENSGT00940000159574.t	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b.c	ENSGT00400000022326.a.d	ENSGT00940000164342.n	ENSGT00950000183008.a.a.b.f #12	ENSGT00710000106790.w.m #22	ENSGT00940000160978.f #27	ENSGT00390000005763.o #34	ENSGT00940000157808.h.f #33	ENSGT00940000160783.d #32	ENSGT00990000204936.a	ENSGT00510000050415.C.k.b	ENSGT00990000204936.b.a	ENSGT00940000174573.a.b	ENSGT00990000207047	ENSGT00990000204936.b.b.b	ENSGT00940000156987.j	ENSGT00530000063506.B.l #36	ENSGT00940000160134.k.b #35	ENSGT00940000155384.b.b.c	ENSGT00390000002849
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00390000013043.mb.a	ENSGT00950000182932.B.b.c	ENSGT00940000159015	ENSGT00390000011904.e	ENSGT00940000154810.n.b.a	ENSGT00940000154259.a.a	ENSGT00940000156061.d	ENSGT00940000158278.e.a.f #18	ENSGT00940000155856.cb.c	ENSGT00940000159574.t	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b.c	ENSGT00400000022326.a.d	ENSGT00940000164342.n	ENSGT00950000183008.a.a.b.f #12	ENSGT00710000106790.w.m #22	ENSGT00940000160978.f #27	ENSGT00390000005763.o #34	ENSGT00940000157808.h.f #33	ENSGT00940000160783.d #32	ENSGT00990000204936.a	ENSGT00510000050415.C.k.b	ENSGT00990000204936.b.a	ENSGT00940000174573.a.b	ENSGT00990000207047	ENSGT00990000204936.b.b.b.b	ENSGT00940000156987.j	ENSGT00530000063506.B.l #36	ENSGT00940000160134.k.b #35	ENSGT00940000155384.b.b.c	ENSGT00390000002849
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00390000013043.lb	ENSGT00950000182932.B.b.c	ENSGT00940000159015	ENSGT00390000011904.e	ENSGT00940000154810.n.b.a	ENSGT00940000154259.a.a	ENSGT00940000156061.d	ENSGT00940000158278.e.a.f #18	ENSGT00940000155856.cb.c	ENSGT00940000159574.t	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b.c	ENSGT00400000022326.a.d	ENSGT00940000164342.n	ENSGT00950000183008.a.a.b.f #12	ENSGT00710000106790.w.m #22	ENSGT00940000160978.f #27	ENSGT00390000005763.o #34	ENSGT00940000157808.h.f #33	ENSGT00940000160783.d #32	ENSGT00940000163573 #20	ENSGT00990000204936.a	ENSGT00510000050415.C.k.b	ENSGT00990000204936.b.a	ENSGT01000000219320	ENSGT00990000209826	ENSGT00990000204936.b.b.b.b	ENSGT00940000156987.j	ENSGT00530000063506.B.l #36	ENSGT00940000160134.k.b #35	ENSGT00940000155384.b.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00950000182932.B.b.c	ENSGT00940000159015	ENSGT00390000011904.e	ENSGT00940000154810.n.b.a	ENSGT00940000154259.a.a	ENSGT00940000156061.d	ENSGT00940000158278.e.a.f #18	ENSGT00940000155856.cb.c	ENSGT00940000159574.t	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b.c	ENSGT00400000022326.a.d	ENSGT00940000164342.n	ENSGT00950000183008.a.a.b.f #12	ENSGT01030000235234.d	ENSGT00710000106790.w.m #22	ENSGT00940000160978.f #27	ENSGT00390000005763.o #34	ENSGT00940000157808.h.f #33	ENSGT00940000160783.d #32	ENSGT00940000163573 #20	ENSGT00990000204936.a	ENSGT00510000050415.C.k.b	ENSGT00990000204936.b.a	ENSGT01000000219320.a	ENSGT01000000219320.b	ENSGT00990000209826	ENSGT00990000204936.b.b.b.b	ENSGT00940000156987.j	ENSGT00530000063506.B.l #36	ENSGT00940000160134.k.b #35
Coho salmon	MODERN SPECIES	29	nat8l (ENSOKIG00005013685)	poln (ENSOKIG00005013694)	haus3 (ENSOKIG00005013742)	ENSOKIG00005013757	TXN (ENSOKIG00005013779)	SVEP1 (ENSOKIG00005013840)	ENSOKIG00005014495	slc7a8a (ENSOKIG00005014559) #18	nedd8 (ENSOKIG00005015631)	gmpr2 (ENSOKIG00005015654)	ENSOKIG00005015688 #16	cideb (ENSOKIG00005015727)	tinf2 (ENSOKIG00005015742)	dhrs4 (ENSOKIG00005015773)	efs (ENSOKIG00005015835) #12	acin1b (ENSOKIG00005015851) #22	AJUBA (ENSOKIG00005015869) #27	ENSOKIG00005015909	mmp14a (ENSOKIG00005015923) #33	ENSOKIG00005015956 #32	ENSOKIG00005015977 #20	ENSOKIG00005015991	ENSOKIG00005016009	ENSOKIG00005016050	ENSOKIG00005016064	ENSOKIG00005016075	ENSOKIG00005016093	ENSOKIG00005016102	ENSOKIG00005016115	ENSOKIG00005016132	ENSOKIG00005016145
Chinook salmon	MODERN SPECIES	6	nat8l (ENSOTSG00005011748)	ENSOTSG00005011749	haus3 (ENSOTSG00005011751)	ENSOTSG00005011753	TXN (ENSOTSG00005011756)	SVEP1 (ENSOTSG00005011766)	slc7a8a (ENSOTSG00005011795) #18	nedd8 (ENSOTSG00005013243)	gmpr2 (ENSOTSG00005013265)	ENSOTSG00005013271 #16	cideb (ENSOTSG00005013272)	tinf2 (ENSOTSG00005013273)	dhrs4 (ENSOTSG00005013274)	efs (ENSOTSG00005013282) #12	ENSOTSG00005013284	acin1b (ENSOTSG00005013287) #22	ENSOTSG00005013293 #27	mrpl52 (ENSOTSG00005013295) #34	mmp14a (ENSOTSG00005013297) #33	ENSOTSG00005013726 #32	ENSOTSG00005013727	ENSOTSG00005013728	ENSOTSG00005013730	ENSOTSG00005013731	ENSOTSG00005013732	ENSOTSG00005013733	ENSOTSG00005013735	ENSOTSG00005013738	ENSOTSG00005013736	ENSOTSG00005013739	oxa1l (ENSOTSG00005013741) #36
Rainbow trout	MODERN SPECIES	13	nat8l (ENSOMYG00000034789)	poln (ENSOMYG00000034795)	haus3 (ENSOMYG00000034799)	ENSOMYG00000034810	ENSOMYG00000034840	ENSOMYG00000034992	ENSOMYG00000062631	slc7a8a (ENSOMYG00000035105) #18	ENSOMYG00000035161	GMPR (ENSOMYG00000035176)	ENSOMYG00000072901 #16	cideb (ENSOMYG00000035196)	tinf2 (ENSOMYG00000035203)	dhrs4 (ENSOMYG00000035221)	efs (ENSOMYG00000035275) #12	acin1b (ENSOMYG00000035307) #22	ENSOMYG00000035323 #27	mrpl52 (ENSOMYG00000035341) #34	mmp14a (ENSOMYG00000035480) #33	ENSOMYG00000036120 #32	ENSOMYG00000036148	ENSOMYG00000036158	ENSOMYG00000061290	ENSOMYG00000036176	ENSOMYG00000036179	ENSOMYG00000036199	ENSOMYG00000055172	ENSOMYG00000036218	ENSOMYG00000036231	slc7a7 (ENSOMYG00000036252) #35	ENSOMYG00000036266
Salmo	ANCESTRAL SPECIES	70	ENSGT00390000013043.mb.a	ENSGT00950000182932.B.b.c	ENSGT00940000159015	ENSGT00390000011904.e	ENSGT00940000154810.n.b.a	ENSGT00940000154259.a.a	ENSGT00940000156061.d	ENSGT00940000158278.e.a.f #18	ENSGT00940000155856.cb.c	ENSGT00940000159574.t	ENSGT00950000182893.a.b.e.a #16	ENSGT00390000018596.A.a.b.c	ENSGT00400000022326.a.d	ENSGT00940000164342.n	ENSGT00950000183008.a.a.b.f #12	ENSGT00710000106790.w.m #22	ENSGT00940000160978.f #27	ENSGT00390000005763.o #34	ENSGT00940000157808.h.f #33	ENSGT00940000160783.d #32	ENSGT00990000204936.a	ENSGT00510000050415.C.k.b	ENSGT00990000204936.b.a	ENSGT00940000174573.a.b	ENSGT00990000207047	ENSGT00990000204936.b.b.a.a	ENSGT00510000050415.C.k.a	ENSGT00940000174573.a.a	ENSGT00940000174852	ENSGT00940000156987.j	ENSGT00530000063506.B.l #36
River trout	DUPLICATION
River trout	MODERN SPECIES	38	C4orf48 (ENSSTUG00000025765)	nat8l (ENSSTUG00000025762)	haus3 (ENSSTUG00000025755)	ENSSTUG00000025723	ENSSTUG00000025711	SVEP1 (ENSSTUG00000025283)	slc7a8a (ENSSTUG00000025110) #18	nedd8 (ENSSTUG00000025092)	gmpr2 (ENSSTUG00000024896)	ENSSTUG00000024885 #16	cideb (ENSSTUG00000024876)	tinf2 (ENSSTUG00000024858)	dhrs4 (ENSSTUG00000024657)	efs (ENSSTUG00000024636) #12	ENSSTUG00000024626 #22	ENSSTUG00000024527 #22	AJUBA (ENSSTUG00000024453) #27	mrpl52 (ENSSTUG00000024422) #34	mmp14a (ENSSTUG00000024317) #33	ENSSTUG00000024288 #32	ENSSTUG00000024277	ENSSTUG00000024256	ENSSTUG00000024247	ENSSTUG00000024216	ENSSTUG00000024199	ENSSTUG00000024184	ENSSTUG00000024168	ENSSTUG00000024142	ENSSTUG00000024055	ENSSTUG00000024032	oxa1l (ENSSTUG00000024000) #36
River trout	MODERN SPECIES	38	nelfa (ENSSTUG00000025780)	C4orf48 (ENSSTUG00000025765)	nat8l (ENSSTUG00000025762)	haus3 (ENSSTUG00000025755)	ENSSTUG00000025723	ENSSTUG00000025711	SVEP1 (ENSSTUG00000025283)	slc7a8a (ENSSTUG00000025110) #18	nedd8 (ENSSTUG00000025092)	gmpr2 (ENSSTUG00000024896)	ENSSTUG00000024885 #16	cideb (ENSSTUG00000024876)	tinf2 (ENSSTUG00000024858)	dhrs4 (ENSSTUG00000024657)	efs (ENSSTUG00000024636) #12	ENSSTUG00000024626 #22	ENSSTUG00000024527 #22	AJUBA (ENSSTUG00000024453) #27	mrpl52 (ENSSTUG00000024422) #34	mmp14a (ENSSTUG00000024317) #33	ENSSTUG00000024288 #32	ENSSTUG00000024277	ENSSTUG00000024256	ENSSTUG00000024247	ENSSTUG00000024216	ENSSTUG00000024199	ENSSTUG00000024184	ENSSTUG00000024168	ENSSTUG00000024142	ENSSTUG00000024055	ENSSTUG00000024032
Atlantic salmon	MODERN SPECIES	26	nelfa (ENSSSAG00000015741)	cssa07h4orf48 (ENSSSAG00000015725)	nat8l (ENSSSAG00000081896)	poln (ENSSSAG00000015698)	ENSSSAG00000015647	ENSSSAG00000015288	ENSSSAG00000010271	slc7a8a (ENSSSAG00000042367) #18	ENSSSAG00000008438	gmpr2 (ENSSSAG00000008429)	ENSSSAG00000008419 #16	cideb (ENSSSAG00000008409)	tinf2 (ENSSSAG00000008334)	dhrs4 (ENSSSAG00000104995)	efs (ENSSSAG00000008328) #12	acin1b (ENSSSAG00000008306) #22	ENSSSAG00000008295 #27	mrpl52 (ENSSSAG00000008288) #34	mmp14a (ENSSSAG00000107354) #33	ENSSSAG00000006270 #32	ENSSSAG00000103370	ENSSSAG00000006001	ENSSSAG00000082238	ENSSSAG00000005428	ENSSSAG00000095891	ENSSSAG00000091347	ENSSSAG00000062069	ENSSSAG00000044458	ENSSSAG00000118486	ENSSSAG00000006199	ENSSSAG00000121505
Huchen	MODERN SPECIES	355	ENSHHUG00000002653	ENSHHUG00000002289	ENSHHUG00000002287	ENSHHUG00000002280	ENSHHUG00000002274	ENSHHUG00000002264	ENSHHUG00000002248	slc7a8a (ENSHHUG00000002184) #18	nedd8 (ENSHHUG00000002036)	gmpr2 (ENSHHUG00000002001)	ENSHHUG00000001962 #16	cideb (ENSHHUG00000001954)	tinf2 (ENSHHUG00000001947)	dhrs4 (ENSHHUG00000001934)	efs (ENSHHUG00000001930) #12	acin1b (ENSHHUG00000001890) #22	AJUBA (ENSHHUG00000001884) #27	mrpl52 (ENSHHUG00000001879) #34	mmp14a (ENSHHUG00000001845) #33	ENSHHUG00000001838 #32	ENSHHUG00000001825	ENSHHUG00000001813	ENSHHUG00000001789	ENSHHUG00000001783	ENSHHUG00000001757	ENSHHUG00000001723	ENSHHUG00000001713	ENSHHUG00000001690	oxa1l (ENSHHUG00000001553) #36	slc7a7 (ENSHHUG00000001471) #35	ENSHHUG00000001443
Salmoninae	ANCESTRAL SPECIES	206	ENSGT00390000011904.f	ENSGT00940000154810.n.b.b	ENSGT00940000163988.i.a	ENSGT00940000156061.c	ENSGT00940000158278.e.a.e #18	ENSGT00940000155856.cb.d	ENSGT00940000159574.s	ENSGT00980000198821	ENSGT00940000175229	ENSGT00390000018596.A.a.b.d	ENSGT01050000245396	ENSGT00400000022326.a.c	ENSGT00940000164342.m	ENSGT00950000183008.a.a.b.e #12	ENSGT01030000235234	ENSGT00710000106790.w.n #22	ENSGT00940000160978.e #27	ENSGT00390000005763.p #34	ENSGT00940000157808.h.e #33	ENSGT00940000160783.c #32
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00390000011904.f	ENSGT00940000154810.n.b.b	ENSGT00940000163988.i.a	ENSGT00940000156061.c	ENSGT00940000158278.e.a.e #18	ENSGT00940000155856.cb.d	ENSGT00940000159574.s	ENSGT00980000198821	ENSGT00940000175229	ENSGT00390000018596.A.a.b.d	ENSGT01050000245396	ENSGT00400000022326.a.c	ENSGT00940000164342.m	ENSGT00950000183008.a.a.b.e #12	ENSGT01030000235234	ENSGT00710000106790.w.n #22	ENSGT00940000160978.e #27	ENSGT00390000005763.p #34	ENSGT00940000157808.h.e #33	ENSGT00940000160783.c #32	ENSGT01030000234540.C.j	ENSGT00940000162700.e.a.a.a.a.a	ENSGT00940000163711.a.e.b	ENSGT00500000044904.a.b.g.b.c.a.b	ENSGT00940000160134.l #35	ENSGT00940000155384.b.b.d	ENSGT00390000006227.c	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a.d	ENSGT00940000160414.c
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00390000011904.f	ENSGT00940000154810.n.b.b	ENSGT00940000163988.i.a	ENSGT00940000156061.c	ENSGT00940000158278.e.a.e #18	ENSGT00940000155856.cb.d	ENSGT00940000159574.s	ENSGT00980000198821	ENSGT00940000175229	ENSGT00390000018596.A.a.b.d	ENSGT01050000245396	ENSGT00400000022326.a.c	ENSGT00940000164342.m	ENSGT00950000183008.a.a.b.e #12	ENSGT01030000235234	ENSGT00710000106790.w.n #22	ENSGT00940000160978.e #27	ENSGT00390000005763.p #34	ENSGT00940000157808.h.e #33	ENSGT00940000160783.c #32	ENSGT01030000234540.C.j	ENSGT00940000162700.e.a.a.a.a.a	ENSGT00940000163711.a.e.b	ENSGT00500000044904.a.b.g.b.c.a.b	ENSGT00500000044904.a.b.g.b.c.b	ENSGT00510000050415.C.l.a	ENSGT00980000198800	ENSGT00940000174573.a.a	ENSGT00510000050415.C.l.b	ENSGT00530000063506.B.k #36	ENSGT00940000160134.k.a #35
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00950000182932.B.b.d	ENSGT00390000011904.f	ENSGT00940000154810.n.b.b	ENSGT00940000163988.i.a	ENSGT00940000156061.c	ENSGT00940000158278.e.a.e #18	ENSGT00940000165806.i	ENSGT00940000159574.s	ENSGT00980000198821	ENSGT00940000165001.a.b.s	ENSGT00390000018596.A.a.b.d	ENSGT00400000022326.a.c	ENSGT00940000164342.m	ENSGT00950000183008.a.a.b.e #12	ENSGT01030000235234.c	ENSGT00710000106790.w.n #22	ENSGT00940000160978.e #27	ENSGT00390000005763.p #34	ENSGT00940000157808.h.e #33	ENSGT00940000160783.c #32	ENSGT01030000234540.C.j	ENSGT00940000162700.e.a.a.a.a.a	ENSGT00940000163711.a.e.b	ENSGT00500000044904.a.b.g.b.c.a.a	ENSGT00500000044904.a.b.g.b.c.a.b.a	ENSGT00500000044904.a.b.g.b.c.b	ENSGT00510000050415.C.l.a	ENSGT00980000198800	ENSGT00940000174573.a.a	ENSGT00510000050415.C.l.b	ENSGT00530000063506.B.k #36
Chinook salmon	MODERN SPECIES	143					ENSOTSG00005025213	slc7a8a (ENSOTSG00005025215) #18	nedd8 (ENSOTSG00005025216)	ENSOTSG00005025219	ENSOTSG00005025347	cideb (ENSOTSG00005025348)	ENSOTSG00005025349	dhrs4 (ENSOTSG00005025350)	efs (ENSOTSG00005025376) #12	ENSOTSG00005025378	ENSOTSG00005025377	ENSOTSG00005025383 #22	ENSOTSG00005025384 #27	mrpl52 (ENSOTSG00005025400) #34	mmp14a (ENSOTSG00005025401) #33	ENSOTSG00005026343 #32	ENSOTSG00005026344	ENSOTSG00005026345	ENSOTSG00005026346	ENSOTSG00005026347
Coho salmon	MODERN SPECIES	7	ENSOKIG00005042749	PTGR1 (ENSOKIG00005029762)	ENSOKIG00005029787	SVEP1 (ENSOKIG00005029926)	ENSOKIG00005030987	slc7a8a (ENSOKIG00005031054) #18	ENSOKIG00005031792	gmpr2 (ENSOKIG00005031819)	ENSOKIG00005031951	ENSOKIG00005031954	cideb (ENSOKIG00005031973)	tinf2 (ENSOKIG00005031997)	dhrs4 (ENSOKIG00005032017)	efs (ENSOKIG00005032095) #12	ENSOKIG00005032101	acin1b (ENSOKIG00005032120) #22	AJUBA (ENSOKIG00005032163) #27	mrpl52 (ENSOKIG00005032175) #34	mmp14a (ENSOKIG00005032212) #33	ENSOKIG00005032725 #32	ENSOKIG00005032751	ENSOKIG00005032786	ENSOKIG00005032806	ENSOKIG00005032827	ENSOKIG00005032842	ENSOKIG00005032854	ENSOKIG00005032884	ENSOKIG00005032891	ENSOKIG00005032907	ENSOKIG00005032934	slc7a7 (ENSOKIG00005032966) #35
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000048114	ENSOMYG00000012165	ENSOMYG00000012191	ENSOMYG00000012294	ENSOMYG00000068673	slc7a8a (ENSOMYG00000012740) #18	nedd8 (ENSOMYG00000012762)	gmpr2 (ENSOMYG00000012778)	ENSOMYG00000012784	cideb (ENSOMYG00000012794)	ENSOMYG00000010862	ENSOMYG00000012810	ENSOMYG00000075426	dhrs4 (ENSOMYG00000012819)	efs (ENSOMYG00000012831) #12	acin1b (ENSOMYG00000012844) #22	ENSOMYG00000012877 #27	mrpl52 (ENSOMYG00000012890) #34	mmp14a (ENSOMYG00000012980) #33	ENSOMYG00000013667 #32	ENSOMYG00000013680	ENSOMYG00000013696	ENSOMYG00000013709	ENSOMYG00000053271	ENSOMYG00000061488	ENSOMYG00000077297	ENSOMYG00000071527	ENSOMYG00000062539	ENSOMYG00000013732	oxa1l (ENSOMYG00000013737) #36	slc7a7 (ENSOMYG00000013810) #35
Salmo	ANCESTRAL SPECIES	51	ENSGT00940000157807.g.a.d	ENSGT01030000234606.a.b.g.b.a.b	ENSGT00390000005342.e	ENSGT00390000013043.mb.b	ENSGT00950000182932.B.b.d	ENSGT00940000154810.n.b.b	ENSGT00940000154259.a.b	ENSGT00940000156061.c	ENSGT00940000158278.e.a.e #18	ENSGT00940000155856.cb.d	ENSGT00940000159574.s	ENSGT00390000018596.A.a.b.d	ENSGT00400000022326.a.c	ENSGT00940000164342.m	ENSGT00950000183008.a.a.b.e #12	ENSGT00710000106790.w.n #22	ENSGT00940000160978.e #27	ENSGT00390000005763.p #34	ENSGT00940000157808.h.e #33	ENSGT00940000160783.c #32	ENSGT01030000234540.C.j	ENSGT00940000162700.e.a.a.a.a.a.c	ENSGT00510000050415.C.l.b.b	ENSGT00510000050415.C.l.b.a	ENSGT00530000063506.B.k #36	ENSGT00940000160134.k.a #35	ENSGT00940000155384.b.b.d	ENSGT00390000006227.c	ENSGT00550000075058.m	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a.d
River trout	MODERN SPECIES	35	ENSSTUG00000006029	nelfa (ENSSTUG00000006005)	ENSSTUG00000005990	nat8l (ENSSTUG00000005980)	PTGR1 (ENSSTUG00000005965)	ENSSTUG00000005891	SVEP1 (ENSSTUG00000004531)	slc7a8a (ENSSTUG00000004058) #18	nedd8 (ENSSTUG00000004024)	gmpr2 (ENSSTUG00000003885)	ENSSTUG00000003866	cideb (ENSSTUG00000003853)	tinf2 (ENSSTUG00000003837)	dhrs4 (ENSSTUG00000003726)	efs (ENSSTUG00000003706) #12	acin1b (ENSSTUG00000003636) #22	AJUBA (ENSSTUG00000003613) #27	mrpl52 (ENSSTUG00000003600) #34	mmp14a (ENSSTUG00000003041) #33	ENSSTUG00000002977 #32	ENSSTUG00000002958	ENSSTUG00000002949	ENSSTUG00000002924	ENSSTUG00000002898	ENSSTUG00000002908	ENSSTUG00000002894	ENSSTUG00000002778	ENSSTUG00000002739	zgc:171695 (ENSSTUG00000002731)	ENSSTUG00000002727	ENSSTUG00000002714
Huchen	MODERN SPECIES	2445							ENSHHUG00000048050 #18	ENSHHUG00000048049 #18	nedd8 (ENSHHUG00000048007)	gmpr2 (ENSHHUG00000047997)	ENSHHUG00000047995	cideb (ENSHHUG00000047993)	ENSHHUG00000047989	efs (ENSHHUG00000047988) #12	dhrs4 (ENSHHUG00000047963)	acin1b (ENSHHUG00000047957) #22	AJUBA (ENSHHUG00000047956) #27	mrpl52 (ENSHHUG00000047951) #34	mmp14a (ENSHHUG00000047931) #33	ENSHHUG00000047920 #32
Northern pike	MODERN SPECIES	23	C4orf48 (ENSELUG00000031080)	nat8l (ENSELUG00000027596)	poln (ENSELUG00000003912)	ENSELUG00000025511	ptgr1.1 (ENSELUG00000003851)	TXN (ENSELUG00000003817)	SVEP1 (ENSELUG00000003795)	slc7a8a (ENSELUG00000003747) #18	nedd8 (ENSELUG00000003724)	gmpr2 (ENSELUG00000003713)	ENSELUG00000003689 #16	cideb (ENSELUG00000003680)	tinf2 (ENSELUG00000003657)	dhrs4 (ENSELUG00000003633)	efs (ENSELUG00000003587) #12	acin1b (ENSELUG00000003511) #22	AJUBA (ENSELUG00000003415) #27	mrpl52 (ENSELUG00000003394) #34	mmp14a (ENSELUG00000003376) #33	ENSELUG00000003357 #32	ENSELUG00000003330	ENSELUG00000032237	ENSELUG00000003316	ENSELUG00000003305	ENSELUG00000003295	ENSELUG00000031551	ENSELUG00000003228	ENSELUG00000003215	ENSELUG00000003266	ENSELUG00000003202	oxa1l (ENSELUG00000024593) #36
Osteoglossocephalai	ANCESTRAL SPECIES	165	ENSGT00940000167415	ENSGT01040000240385.A.a.b.b	ENSGT01040000240400.c.b.b.b	ENSGT00390000014495	ENSGT00940000154888.b	ENSGT00940000154888.a	ENSGT00940000153649.B	ENSGT00940000164991.a.b	ENSGT00940000165001.a.b	ENSGT00940000155384.b.a	ENSGT00940000160531	ENSGT00940000157797	ENSGT00950000182893.a.b.e.b #16	ENSGT00740000115581.e #17	ENSGT00390000007438 #21	ENSGT00710000106790.x #22
Clupeocephala	ANCESTRAL SPECIES	85	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000162556.E.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00950000182774.b.b.b	ENSGT00390000019377.a.a.a	ENSGT01080000257720	ENSGT00950000182900.D	ENSGT00940000156907.p.b.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00940000169565
Otomorpha	ANCESTRAL SPECIES	38	ENSGT01100000263518.C	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT01030000235234	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00950000182774.b.b.b.a.b	ENSGT00390000019377.a.a.a	ENSGT00950000183116.b.b	ENSGT00950000182900.D	ENSGT01080000257720	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00940000169565
Clupeiformes	DUPLICATION
Clupeiformes	ANCESTRAL SPECIES	184	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x.b #22	ENSGT01030000235234	ENSGT00710000106790.x.a #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00950000182774.b.b.b.a.b	ENSGT00390000019377.a.a.a	ENSGT00950000183116.b.b	ENSGT00940000156907.p.b.a.e	ENSGT00950000182900.D	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a
Denticle herring	MODERN SPECIES	14	PSMB11 (ENSDCDG00000001923) #24	prmt5 (ENSDCDG00000001892) #29	ap1g2 (ENSDCDG00000001873)	nedd8l (ENSDCDG00000001855)	zp3f.2 (ENSDCDG00000001818)	zp3f.1 (ENSDCDG00000001813)	ENSDCDG00000001810	ENSDCDG00000001807 #17	homeza (ENSDCDG00000001801) #16	dhrs1 (ENSDCDG00000001793)	dhrs1 (ENSDCDG00000001791)	ENSDCDG00000001786	si:ch211-14a17.11 (ENSDCDG00000001784) #21	ENSDCDG00000001782 #22	ENSDCDG00000001781	ENSDCDG00000001777 #22	mmp14b (ENSDCDG00000001648) #33	ENSDCDG00000001608	ENSDCDG00000001605	cryz (ENSDCDG00000001563)	tyw3 (ENSDCDG00000001555)	lhx8a (ENSDCDG00000001547)	penka (ENSDCDG00000001545)	fam110b (ENSDCDG00000001543)	cyp7a1 (ENSDCDG00000001541)	tox (ENSDCDG00000001537)	ENSDCDG00000000679	sdr16c5a (ENSDCDG00000000411)	sdr16c5a (ENSDCDG00000000404)	penka (ENSDCDG00000000396)	bpnt2 (ENSDCDG00000000378)
Atlantic herring	MODERN SPECIES	14	PSMB11 (ENSCHAG00000007236) #24	prmt5 (ENSCHAG00000006322) #29	ENSCHAG00000005549 #18	ap1g2 (ENSCHAG00000004882)	nedd8l (ENSCHAG00000004765)	zp3f.2 (ENSCHAG00000004603)	zp3f.1 (ENSCHAG00000004402)	zp3f.2 (ENSCHAG00000004170)	zp3f.1 (ENSCHAG00000004104)	homeza (ENSCHAG00000004088) #16	dhrs1 (ENSCHAG00000003850)	ENSCHAG00000003834	ENSCHAG00000003317	si:ch211-14a17.11 (ENSCHAG00000003254) #21	ENSCHAG00000003223	ENSCHAG00000003021 #22	mmp14b (ENSCHAG00000002635) #33	ENSCHAG00000002592	ENSCHAG00000025964	cbln12 (ENSCHAG00000025953)	chd8 (ENSCHAG00000024247)	ENSCHAG00000024154	ENSCHAG00000024150	ENSCHAG00000024144	casq1a (ENSCHAG00000023997)	ENSCHAG00000023957	DCAF8 (ENSCHAG00000023736)	ENSCHAG00000023720	ENSCHAG00000023717	ENSCHAG00000023713	apol1 (ENSCHAG00000023655)
Clupeiformes	ANCESTRAL SPECIES	184	ENSGT00940000163496.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x.b #22	ENSGT01030000235234	ENSGT00710000106790.x.a #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00950000182774.b.b.b.a.b	ENSGT00390000019377.a.a.a	ENSGT00950000183116.b.b	ENSGT00940000156907.p.b.a.e	ENSGT00950000182900.D	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a
Denticle herring	MODERN SPECIES	14	CDH24 (ENSDCDG00000001935) #23	psmb5 (ENSDCDG00000001928) #25	PSMB11 (ENSDCDG00000001923) #24	prmt5 (ENSDCDG00000001892) #29	ap1g2 (ENSDCDG00000001873)	nedd8l (ENSDCDG00000001855)	zp3f.2 (ENSDCDG00000001818)	zp3f.1 (ENSDCDG00000001813)	ENSDCDG00000001810	ENSDCDG00000001807 #17	homeza (ENSDCDG00000001801) #16	dhrs1 (ENSDCDG00000001793)	dhrs1 (ENSDCDG00000001791)	ENSDCDG00000001786	si:ch211-14a17.11 (ENSDCDG00000001784) #21	ENSDCDG00000001782 #22	ENSDCDG00000001781	ENSDCDG00000001777 #22	mmp14b (ENSDCDG00000001648) #33	ENSDCDG00000001608	ENSDCDG00000001605	cryz (ENSDCDG00000001563)	tyw3 (ENSDCDG00000001555)	lhx8a (ENSDCDG00000001547)	penka (ENSDCDG00000001545)	fam110b (ENSDCDG00000001543)	cyp7a1 (ENSDCDG00000001541)	tox (ENSDCDG00000001537)	ENSDCDG00000000679	sdr16c5a (ENSDCDG00000000411)	sdr16c5a (ENSDCDG00000000404)
Otophysi	ANCESTRAL SPECIES	3	ENSGT00940000163496.a.i.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT01030000235234	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000172304.b	ENSGT00390000019377.a.a.a	ENSGT00950000183116.b.b	ENSGT00940000156907.p.b.b	ENSGT00950000182900.D	ENSGT01080000257720	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a
Characiphysae	ANCESTRAL SPECIES	35	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT01030000235234	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a
Characiphysae_b	ANCESTRAL SPECIES	33	ENSGT00940000163496.a.i.a	ENSGT00940000159567.a.a #23	ENSGT00940000163520.A.a.a.a.b.a	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT01030000235234	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a
Characoidei	ANCESTRAL SPECIES	20	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163520.A.a.a.a.b.a	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT01030000235234	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00940000155924.b	ENSGT00940000161173	ENSGT00940000166185	ENSGT00940000160470	ENSGT00950000183179.a	ENSGT00940000158333
Red-bellied piranha	MODERN SPECIES	288		ENSPNAG00000021951	psmb5 (ENSPNAG00000021948) #25	PSMB11 (ENSPNAG00000021917) #24	prmt5 (ENSPNAG00000021904) #29	SLC7A8 (ENSPNAG00000004818) #18	ap1g2 (ENSPNAG00000021773)	nedd8l (ENSPNAG00000021761)	zp3f.2 (ENSPNAG00000021733)	zp3f.1 (ENSPNAG00000021691)	ENSPNAG00000021669 #17	homeza (ENSPNAG00000021633) #16	dhrs1 (ENSPNAG00000021625)	dhrs1 (ENSPNAG00000021589)	si:ch211-14a17.11 (ENSPNAG00000021556) #21	ENSPNAG00000021539 #22	mmp14b (ENSPNAG00000021519) #33	ENSPNAG00000021463	ENSPNAG00000021450	cbln12 (ENSPNAG00000021441)	chd8 (ENSPNAG00000003683)	ENSPNAG00000021394	casq1a (ENSPNAG00000021387)	dhx9 (ENSPNAG00000021343)	SHCBP1L (ENSPNAG00000021325)	lamc1 (ENSPNAG00000021297)	ENSPNAG00000021216	ENSPNAG00000021205	ENSPNAG00000021199	ENSPNAG00000021191	ENSPNAG00000021180
Mexicana tetra	MODERN SPECIES	7	ENSAMXG00000029585	PSMB11 (ENSAMXG00000042921) #24	psmb5 (ENSAMXG00000033908) #25	prmt5 (ENSAMXG00000021165) #29	ENSAMXG00000035658 #18	ap1g2 (ENSAMXG00000021108)	nedd8l (ENSAMXG00000031135)	zp3f.2 (ENSAMXG00000021080)	zp3f.1 (ENSAMXG00000021063)	ENSAMXG00000021049 #17	homeza (ENSAMXG00000025309) #16	dhrs1 (ENSAMXG00000035255)	dhrs1 (ENSAMXG00000038938)	dhrs1 (ENSAMXG00000030937)	si:ch211-14a17.11 (ENSAMXG00000039187) #21	ENSAMXG00000035137 #22	ENSAMXG00000020999	mmp14b (ENSAMXG00000020970) #33	ENSAMXG00000020956	cbln12 (ENSAMXG00000031645)	ENSAMXG00000041804	ENSAMXG00000020912	casq1a (ENSAMXG00000034607)	ENSAMXG00000035118	ENSAMXG00000032080	dhx9 (ENSAMXG00000020901)	rbm46 (ENSAMXG00000020892)	lamc1 (ENSAMXG00000020858)	LAMC2 (ENSAMXG00000020835)	nmnat2 (ENSAMXG00000020818)	smg7 (ENSAMXG00000020809)
Electric eel	MODERN SPECIES	708					ENSEEEG00000019396	psmb5 (ENSEEEG00000019394) #25	ENSEEEG00000019387 #24	prmt5 (ENSEEEG00000019382) #29	ENSEEEG00000019376 #18	ap1g2 (ENSEEEG00000019375)	zp3f.1 (ENSEEEG00000019367)	homeza (ENSEEEG00000019366) #16	dhrs1 (ENSEEEG00000019363)	si:ch211-14a17.11 (ENSEEEG00000019361) #21	ENSEEEG00000019360	ENSEEEG00000019358 #22	mmp14b (ENSEEEG00000019134) #33	ENSEEEG00000019128	cbln12 (ENSEEEG00000019127)	chd8 (ENSEEEG00000018983)
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00940000163731.d	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000172304.b	ENSGT00390000019377.a.a.a	ENSGT00950000183116.b.b.e	ENSGT00940000156907.p.b.b	ENSGT00950000182900.D	ENSGT01080000257720	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00950000183116.b.a.a.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	127				ENSGT00390000001141.f #29	ENSGT00940000158278.e.b.g #18	ENSGT00950000182838.B.a.b.j	ENSGT00940000155856.bb	ENSGT00940000165806.k.a	ENSGT01030000234567.A.b.d.d	ENSGT01030000234567.A.b.c.g.b	ENSGT00950000182893.a.b.e.b.a #16	ENSGT00940000157797.n	ENSGT00390000007438.w.a #21	ENSGT00940000163731.d	ENSGT00390000007438.x #21	ENSGT00710000106790.x.c #22	ENSGT00940000157808.g.c #33	ENSGT00940000155384.b.a.c	ENSGT00940000162556.E.a.i.b.b.a	ENSGT00940000165001.a.b.f	ENSGT00940000164991.a.b.c	ENSGT00940000153649.B.c	ENSGT00940000154888.a.a	ENSGT00940000172304.b.a	ENSGT00390000019377.a.a.a.a	ENSGT00950000183116.b.b.e.a.a.b	ENSGT00940000156907.p.b.b.f	ENSGT00950000182900.D.e	ENSGT01080000257720.a	ENSGT01030000234599.a.b.d.a.b.b.h	ENSGT01030000234599.a.b.d.b.a.a.e
Cyprininae_a	ANCESTRAL SPECIES	145				ENSGT00390000001141.f #29	ENSGT00940000158278.e.b.g #18	ENSGT00950000182838.B.a.b.j	ENSGT00940000155856.bb	ENSGT00940000165806.k.a	ENSGT01030000234567.A.b.d.d	ENSGT01030000234567.A.b.c.g.b	ENSGT00950000182893.a.b.e.b.a #16	ENSGT00940000157797.n	ENSGT00390000007438.w.a #21	ENSGT00940000163731.d	ENSGT00390000007438.x #21	ENSGT00710000106790.x.c #22	ENSGT00940000157808.g.c #33	ENSGT00940000155384.b.a.c	ENSGT00940000162556.E.a.i.b.b.a.b	ENSGT00940000162556.E.a.i.b.b.a.a	ENSGT00940000165001.a.b.f	ENSGT00940000164991.a.b.c	ENSGT00940000153649.B.c	ENSGT00940000154888.a.a	ENSGT00940000172304.b.a	ENSGT00390000019377.a.a.a.a	ENSGT00950000183116.b.b.e.a.a.b	ENSGT00940000156907.p.b.b.f	ENSGT00950000182900.D.e	ENSGT01080000257720.a	ENSGT01030000234599.a.b.d.a.b.b.h
Golden-line barbel	MODERN SPECIES	140	ENSSGRG00000043839	ENSSGRG00000043838	CDH24 (ENSSGRG00000043836) #23	psmb5 (ENSSGRG00000043835) #25	PSMB11 (ENSSGRG00000043825) #24	prmt5 (ENSSGRG00000043067) #29	ENSSGRG00000042847 #18	ENSSGRG00000042626	ENSSGRG00000042537	zp3f.2 (ENSSGRG00000042535)	zp3f.1 (ENSSGRG00000042534)	homeza (ENSSGRG00000042532) #16	dhrs1 (ENSSGRG00000042530)	dhrs1 (ENSSGRG00000042529)	si:ch211-14a17.11 (ENSSGRG00000042524) #21	ENSSGRG00000042523 #22	mmp14b (ENSSGRG00000042253) #33	ENSSGRG00000042239	ENSSGRG00000042237	ENSSGRG00000042235	ENSSGRG00000042233	cbln12 (ENSSGRG00000042232)	chd8 (ENSSGRG00000039884)	ENSSGRG00000039851	si:rp71-1g18.1 (ENSSGRG00000039850)	casq1a (ENSSGRG00000039745)	ENSSGRG00000039741	hnrnpc (ENSSGRG00000039738)	pcp4l1 (ENSSGRG00000039734)	ENSSGRG00000039733	apol1 (ENSSGRG00000039732)
Common carp reference	MODERN SPECIES	29	ENSCCRG00000006103	carmil3 (ENSCCRG00000048262)	ENSCCRG00000002330	ENSCCRG00000079385	ENSCCRG00000078333 #23	ENSCCRG00000076939	psmb5 (ENSCCRG00000014783) #25	ENSCCRG00000061664	prmt5 (ENSCCRG00000070829) #29	ENSCCRG00000033654 #18	ap1g2 (ENSCCRG00000052573)	nedd8l (ENSCCRG00000053783)	zp3f.1 (ENSCCRG00000022638)	homeza (ENSCCRG00000076536) #16	dhrs1 (ENSCCRG00000039098)	ENSCCRG00000039039 #22	ENSCCRG00000039107	si:ch211-14a17.11 (ENSCCRG00000081839) #21	mmp14b (ENSCCRG00000058204) #33	ENSCCRG00000052786	ENSCCRG00000039142	ENSCCRG00000054019	cbln12 (ENSCCRG00000039150)	chd8 (ENSCCRG00000039202)	ENSCCRG00000053500	si:rp71-1g18.1 (ENSCCRG00000070810)	casq1a (ENSCCRG00000058325)	hnrnpc (ENSCCRG00000070692)	ENSCCRG00000053834	ENSCCRG00000074084	pcp4l1 (ENSCCRG00000071296)
Goldfish	MODERN SPECIES	19	carmil3 (ENSCARG00000017196)	ENSCARG00000017326	ENSCARG00000017333	ENSCARG00000017348 #23	psmb5 (ENSCARG00000017408) #25	prmt5 (ENSCARG00000017490) #29	ENSCARG00000018337 #18	ap1g2 (ENSCARG00000018622)	ENSCARG00000018866	zp3f.2 (ENSCARG00000018891)	zp3f.1 (ENSCARG00000018909)	homeza (ENSCARG00000018922) #16	dhrs1 (ENSCARG00000018930)	ENSCARG00000018952	si:ch211-14a17.11 (ENSCARG00000019091) #21	ENSCARG00000036593 #22	mmp14b (ENSCARG00000036652) #33	ENSCARG00000036764	ENSCARG00000036773	ENSCARG00000036786	cbln12 (ENSCARG00000036812)	chd8 (ENSCARG00000036983)	ENSCARG00000042355	si:rp71-1g18.1 (ENSCARG00000042383)	casq1a (ENSCARG00000042416)	ENSCARG00000042595	hnrnpc (ENSCARG00000042635)	ENSCARG00000042991	ENSCARG00000043023	pcp4l1 (ENSCARG00000043072)	ENSCARG00000043098
Cyprininae	ANCESTRAL SPECIES	71	ENSGT00940000159567.a.a.f #23	ENSGT00940000157841.c #25	ENSGT00940000157841.d #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141.e #29	ENSGT00940000158278.e.b.h #18	ENSGT00950000182838.B.a.b.i	ENSGT00940000165806.k.b	ENSGT01030000234567.A.b.d.c	ENSGT01030000234567.A.b.c.g.a	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b.b #16	ENSGT00940000157797.m	ENSGT00940000163731.c	ENSGT00390000007438.w.b #21	ENSGT00710000106790.x.d #22	ENSGT00940000157808.g.d #33	ENSGT00940000155384.b.a.d	ENSGT00940000162556.E.a.i.b.b.b	ENSGT00940000165001.a.b.e	ENSGT00940000164991.a.b.d	ENSGT00940000153649.B.d	ENSGT00940000154888.a.b	ENSGT00940000172304.b.b	ENSGT00390000019377.a.a.a.b	ENSGT00950000183116.b.b.e.a.a.a	ENSGT00940000156907.p.b.b.e	ENSGT00950000182900.D.f	ENSGT01080000257720.b	ENSGT01030000234599.a.b.d.a.b.b.g	ENSGT01030000234599.a.b.d.b.a.a.f
Cyprininae_a	ANCESTRAL SPECIES	84	ENSGT00940000159567.a.a.f #23	ENSGT00940000157841.c #25	ENSGT00940000157841.d #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141.e #29	ENSGT00940000158278.e.b.h #18	ENSGT00950000182838.B.a.b.i	ENSGT00940000165806.k.b	ENSGT01030000234567.A.b.d.c	ENSGT01030000234567.A.b.c.g.a	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b.b #16	ENSGT00940000157797.m	ENSGT00940000163731.c	ENSGT00390000007438.w.b #21	ENSGT00710000106790.x.d #22	ENSGT00940000157808.g.d #33	ENSGT00940000155384.b.a.d	ENSGT00940000165001.a.b.e	ENSGT00940000164991.a.b.d	ENSGT00940000153649.B.d	ENSGT00940000154888.a.b	ENSGT00940000172304.b.b	ENSGT00390000019377.a.a.a.b	ENSGT00950000183116.b.b.e.a.a.a	ENSGT00940000156907.p.b.b.e	ENSGT00950000182900.D.f	ENSGT01080000257720.b	ENSGT01030000234599.a.b.d.a.b.b.g	ENSGT01030000234599.a.b.d.b.a.a.f	ENSGT00940000169565.a
Common carp reference	MODERN SPECIES	21	ENSCCRG00000072148	ENSCCRG00000081403	ENSCCRG00000003989 #23	ENSCCRG00000056212 #24	prmt5 (ENSCCRG00000012565) #29	ENSCCRG00000015023 #18	ap1g2 (ENSCCRG00000014800)	ENSCCRG00000052544	zp3f.2 (ENSCCRG00000052540)	zp3f.1 (ENSCCRG00000052531)	ENSCCRG00000052525 #17	homeza (ENSCCRG00000055991) #16	dhrs1 (ENSCCRG00000053593)	ENSCCRG00000038998	ENSCCRG00000039018	ENSCCRG00000077136 #22	mmp14b (ENSCCRG00000060060) #33	ENSCCRG00000072031	ENSCCRG00000039986	chd8 (ENSCCRG00000000874)	ENSCCRG00000069959	si:rp71-1g18.1 (ENSCCRG00000067763)	casq1a (ENSCCRG00000082893)	ENSCCRG00000055890	hnrnpc (ENSCCRG00000047805)	ENSCCRG00000061101	pcp4l1 (ENSCCRG00000081412)	ENSCCRG00000064263	apol1 (ENSCCRG00000059701)	mbl2 (ENSCCRG00000065031)	ENSCCRG00000058529
Golden-line barbel	MODERN SPECIES	20				psmb5 (ENSSGRG00000014306) #25	PSMB11 (ENSSGRG00000014305) #24	prmt5 (ENSSGRG00000013638) #29	ENSSGRG00000013632 #18	ap1g2 (ENSSGRG00000011759)	ENSSGRG00000011601	zp3f.2 (ENSSGRG00000011580)	zp3f.1 (ENSSGRG00000011565)	homeza (ENSSGRG00000011564) #16	dhrs1 (ENSSGRG00000011563)	ENSSGRG00000011561	si:ch211-14a17.11 (ENSSGRG00000011560) #21	ENSSGRG00000011559 #22	mmp14b (ENSSGRG00000010268) #33	ENSSGRG00000010237	ENSSGRG00000010235	cbln12 (ENSSGRG00000010234)	chd8 (ENSSGRG00000008311)	TOX4 (ENSSGRG00000008282)	si:rp71-1g18.1 (ENSSGRG00000008281)	casq1a (ENSSGRG00000007866)	ENSSGRG00000007864	ENSSGRG00000007863	hnrnpc (ENSSGRG00000007849)	ENSSGRG00000007846	PCP4L1 (ENSSGRG00000007845)	ENSSGRG00000007843	apol1 (ENSSGRG00000007841)
Goldfish	MODERN SPECIES	11	hs6st1a (ENSCARG00000002194)	uggt1 (ENSCARG00000001686)	fbp2 (ENSCARG00000001564)	ENSCARG00000001560	ENSCARG00000001556	psmb5 (ENSCARG00000001549) #25	ENSCARG00000001544 #24	prmt5 (ENSCARG00000001473) #29	ap1g2 (ENSCARG00000001429)	ENSCARG00000001407	zp3f.2 (ENSCARG00000001401)	homeza (ENSCARG00000001381) #16	dhrs1 (ENSCARG00000001373)	ENSCARG00000001342	si:ch211-14a17.11 (ENSCARG00000001321) #21	ENSCARG00000001288 #22	mmp14b (ENSCARG00000001257) #33	ENSCARG00000001253	ENSCARG00000001250	ENSCARG00000001247	cbln12 (ENSCARG00000001242)	chd8 (ENSCARG00000000835)	TOX4 (ENSCARG00000000651)	si:rp71-1g18.1 (ENSCARG00000000643)	casq1a (ENSCARG00000000567)	ENSCARG00000000522	hnrnpc (ENSCARG00000000496)	ENSCARG00000000460	pcp4l1 (ENSCARG00000000440)	ENSCARG00000000437	apol1 (ENSCARG00000000421)
Zebrafish	MODERN SPECIES	11	ENSDARG00000111637	CDH24 (ENSDARG00000077996) #23	psmb5 (ENSDARG00000075445) #25	psmb11a (ENSDARG00000108530) #24	prmt5 (ENSDARG00000079605) #29	ENSDARG00000054343 #18	nedd8l (ENSDARG00000103472)	ap1g2 (ENSDARG00000054337)	zp3f.2 (ENSDARG00000054313)	zp3f.1 (ENSDARG00000038720)	ENSDARG00000093723 #17	homeza (ENSDARG00000054304) #16	dhrs1 (ENSDARG00000054300)	ENSDARG00000076534	C2H14orf119 (ENSDARG00000054292) #21	ENSDARG00000054290 #22	mmp14b (ENSDARG00000008388) #33	ENSDARG00000075116	ENSDARG00000068240	cbln12 (ENSDARG00000068232)	chd8 (ENSDARG00000075543)	ENSDARG00000002031	si:rp71-1g18.1 (ENSDARG00000053792)	casq1a (ENSDARG00000038716)	ENSDARG00000053802	hnrnpc (ENSDARG00000053810)	DCAF8 (ENSDARG00000000324)	pcp4l1 (ENSDARG00000023181)	ENSDARG00000023185	apol1 (ENSDARG00000007425)	cbln9 (ENSDARG00000030254)
Euteleosteomorpha	ANCESTRAL SPECIES	121	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00940000160531	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00950000182900.D	ENSGT00940000156907.p.b.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00940000169565
Acanthomorphata	ANCESTRAL SPECIES	57	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Tiger tail seahorse	MODERN SPECIES	110					CDH24 (ENSHCOG00000016908) #23	psmb5 (ENSHCOG00000016870) #25	prmt5 (ENSHCOG00000016863) #29	ap1g2 (ENSHCOG00000016812)	nedd8l (ENSHCOG00000016752)	zp3f.2 (ENSHCOG00000016749)	zp3f.1 (ENSHCOG00000016711)	ENSHCOG00000016700 #17	homeza (ENSHCOG00000016687) #16	dhrs1 (ENSHCOG00000016684)	si:ch211-14a17.11 (ENSHCOG00000016679) #21	ENSHCOG00000016677 #22	mmp14b (ENSHCOG00000000769) #33	cbln12 (ENSHCOG00000016636)	chd8 (ENSHCOG00000016611)	ENSHCOG00000016531	ENSHCOG00000016526	casq1a (ENSHCOG00000016521)	oxsr1a (ENSHCOG00000016468)	plcd1b (ENSHCOG00000015906)	ctdsplb (ENSHCOG00000015895)	hhatla (ENSHCOG00000015876)	klhl40a (ENSHCOG00000015837)	ENSHCOG00000015828	ENSHCOG00000015688	eif2b5 (ENSHCOG00000015732)	ENSHCOG00000015681
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00390000004964	ENSGT00940000160062.a #31	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT01060000249153	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Mangrove rivulus	MODERN SPECIES	55	ENSKMAG00000020595	rem2 (ENSKMAG00000020585) #31	ENSKMAG00000020571	carmil3 (ENSKMAG00000020527)	ENSKMAG00000020501 #23	psmb5 (ENSKMAG00000020473) #25	PSMB11 (ENSKMAG00000020416) #24	prmt5 (ENSKMAG00000020370) #29	nedd8l (ENSKMAG00000020347)	ap1g2 (ENSKMAG00000020315)	zp3f.2 (ENSKMAG00000020293)	zp3f.1 (ENSKMAG00000020285)	homeza (ENSKMAG00000020275) #16	dhrs1 (ENSKMAG00000020266)	si:ch211-14a17.11 (ENSKMAG00000020254) #21	ENSKMAG00000020228 #22	mmp14b (ENSKMAG00000020187) #33	ENSKMAG00000020172	ENSKMAG00000020155	cbln12 (ENSKMAG00000020142)	chd8 (ENSKMAG00000020106)	ENSKMAG00000020069	ENSKMAG00000020086	ENSKMAG00000020060	casq1a (ENSKMAG00000020035)	selenoj (ENSKMAG00000020012)	eif2b5 (ENSKMAG00000019967)	ENSKMAG00000019945	ENSKMAG00000019923	klhl40a (ENSKMAG00000019905)	hhatla (ENSKMAG00000019867)
Turquoise killifish	MODERN SPECIES	1618	ENSNFUG00015007155	AL954696.1 (ENSNFUG00015007164)	REM2 (ENSNFUG00015007175) #31	ENSNFUG00015007179	ENSNFUG00015007181	ENSNFUG00015007185	ENSNFUG00015007188 #23	ENSNFUG00015007220	PSMB11 (ENSNFUG00015007228) #24	prmt5 (ENSNFUG00015007261) #29	ap1g2 (ENSNFUG00015007317)	NEDD8 (ENSNFUG00015007349)	HOMEZ (ENSNFUG00015007371) #16	DHRS1 (ENSNFUG00015007373)	si:ch211-14a17.11 (ENSNFUG00015007379) #21	ENSNFUG00015007383 #22	MMP14B (ENSNFUG00015007461) #33	SALL2 (ENSNFUG00015008366)	ENSNFUG00015008368	cbln12 (ENSNFUG00015008372)	chd8 (ENSNFUG00015008409)	ENSNFUG00015008771	ENSNFUG00015008777	Nfu_g_1_020616 (ENSNFUG00015008785)	casq1a (ENSNFUG00015008804)	OLA.3887 (ENSNFUG00015008857)	EIF2B5 (ENSNFUG00015008864)	ENSNFUG00015008947	ENSNFUG00015009040	klhl40a (ENSNFUG00015009402)	ENSNFUG00015009411
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
NAME_4	ANCESTRAL SPECIES	9	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Sheepshead minnow	MODERN SPECIES	304	ENSCVAG00000006446	rem2 (ENSCVAG00000006437) #31	ENSCVAG00000006431	carmil3 (ENSCVAG00000006424)	ENSCVAG00000006357 #23	psmb5 (ENSCVAG00000006339) #25	prmt5 (ENSCVAG00000006325) #29	ap1g2 (ENSCVAG00000006281)	nedd8l (ENSCVAG00000006267)	zp3f.2 (ENSCVAG00000006253)	ENSCVAG00000006120 #17	homeza (ENSCVAG00000006104) #16	dhrs1 (ENSCVAG00000006098)	si:ch211-14a17.11 (ENSCVAG00000006071) #21	ENSCVAG00000006064	ENSCVAG00000006054 #22	mmp14b (ENSCVAG00000006040) #33	ENSCVAG00000006032	ENSCVAG00000006027	ENSCVAG00000006019	cbln12 (ENSCVAG00000006016)	ENSCVAG00000006010	ENSCVAG00000005992	ENSCVAG00000005985	ENSCVAG00000005980	casq1a (ENSCVAG00000005973)	selenoj (ENSCVAG00000005955)	ENSCVAG00000005889	ENSCVAG00000005881	ENSCVAG00000005870
Mummichog	MODERN SPECIES	2251			ENSFHEG00000016888 #23	psmb5 (ENSFHEG00000016895) #25	PSMB11 (ENSFHEG00000017177) #24	prmt5 (ENSFHEG00000017278) #29	nedd8l (ENSFHEG00000017291)	ap1g2 (ENSFHEG00000017386)	zp3f.2 (ENSFHEG00000017401)	zp3f.1 (ENSFHEG00000017408)	homeza (ENSFHEG00000017413) #16	dhrs1 (ENSFHEG00000017448)	ENSFHEG00000017476	si:ch211-14a17.11 (ENSFHEG00000017465) #21	ENSFHEG00000017486	ENSFHEG00000017491 #22	mmp14b (ENSFHEG00000017542) #33	ENSFHEG00000017550	ENSFHEG00000017556	cbln12 (ENSFHEG00000017561)	ENSFHEG00000017596	ENSFHEG00000017635	ENSFHEG00000017644	casq1a (ENSFHEG00000017681)	selenoj (ENSFHEG00000017709)	eif2b5 (ENSFHEG00000017754)	ENSFHEG00000017766	ENSFHEG00000017979	klhl40a (ENSFHEG00000017994)	hhatla (ENSFHEG00000018067)	ctdsplb (ENSFHEG00000018093)
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00980000198654	ENSGT00940000157990.a.a.f	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT01060000249153	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Poecilia	ANCESTRAL SPECIES	19	ENSGT00980000198654	ENSGT00940000157990.a.a.f	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT01060000249153	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a
Guppy	DUPLICATION
Guppy	MODERN SPECIES	447	ENSPREG00000022149	ENSPREG00000022127 #23	ENSPREG00000022116	ENSPREG00000022111	psmb5 (ENSPREG00000022102) #25	PSMB11 (ENSPREG00000022073) #24	prmt5 (ENSPREG00000022051) #29	ap1g2 (ENSPREG00000022013)	nedd8l (ENSPREG00000022000)	zp3f.2 (ENSPREG00000021981)	zp3f.1 (ENSPREG00000021970)	homeza (ENSPREG00000021965) #16	dhrs1 (ENSPREG00000021956)	si:ch211-14a17.11 (ENSPREG00000021948) #21	ENSPREG00000021941 #22	ENSPREG00000021930 #22	mmp14b (ENSPREG00000021914) #33	ENSPREG00000021908	ENSPREG00000021903	cbln12 (ENSPREG00000021889)	chd8 (ENSPREG00000021867)	ENSPREG00000021853	ENSPREG00000021845	ENSPREG00000021836	casq1a (ENSPREG00000021818)	selenoj (ENSPREG00000021799)	eif2b5 (ENSPREG00000021790)	ENSPREG00000021783	ENSPREG00000021772	klhl40a (ENSPREG00000021763)	hhatla (ENSPREG00000021742)
Guppy	MODERN SPECIES	447	carmil3 (ENSPREG00000022193)	ENSPREG00000022149	ENSPREG00000022127 #23	ENSPREG00000022116	ENSPREG00000022111	psmb5 (ENSPREG00000022102) #25	PSMB11 (ENSPREG00000022073) #24	prmt5 (ENSPREG00000022051) #29	ap1g2 (ENSPREG00000022013)	nedd8l (ENSPREG00000022000)	zp3f.2 (ENSPREG00000021981)	zp3f.1 (ENSPREG00000021970)	homeza (ENSPREG00000021965) #16	dhrs1 (ENSPREG00000021956)	si:ch211-14a17.11 (ENSPREG00000021948) #21	ENSPREG00000021941 #22	ENSPREG00000021930 #22	mmp14b (ENSPREG00000021914) #33	ENSPREG00000021908	ENSPREG00000021903	cbln12 (ENSPREG00000021889)	chd8 (ENSPREG00000021867)	ENSPREG00000021853	ENSPREG00000021845	ENSPREG00000021836	casq1a (ENSPREG00000021818)	selenoj (ENSPREG00000021799)	eif2b5 (ENSPREG00000021790)	ENSPREG00000021783	ENSPREG00000021772	klhl40a (ENSPREG00000021763)
NAME_6	ANCESTRAL SPECIES	89				ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT01060000249153.b	ENSGT01060000249153.a	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Amazon molly	MODERN SPECIES	301				psmb5 (ENSPFOG00000016982) #25	PSMB11 (ENSPFOG00000016979) #24	prmt5 (ENSPFOG00000016877) #29	ap1g2 (ENSPFOG00000016697)	nedd8l (ENSPFOG00000016661)	zp3f.2 (ENSPFOG00000016657)	zp3f.1 (ENSPFOG00000016636)	ENSPFOG00000016632 #17	homeza (ENSPFOG00000020911) #16	dhrs1 (ENSPFOG00000016608)	ENSPFOG00000021680	si:ch211-14a17.11 (ENSPFOG00000016600) #21	ENSPFOG00000016546 #22	mmp14b (ENSPFOG00000016510) #33	ENSPFOG00000016504	ENSPFOG00000016479	cbln12 (ENSPFOG00000016472)	chd8 (ENSPFOG00000016369)	ENSPFOG00000016347	ENSPFOG00000016328	selenoj (ENSPFOG00000016284)	ENSPFOG00000016168	casq1a (ENSPFOG00000016307)	selenoj (ENSPFOG00000016084)	eif2b5 (ENSPFOG00000016049)	ENSPFOG00000024733	ENSPFOG00000015954	klhl40a (ENSPFOG00000015929)
Sailfin molly	MODERN SPECIES	1795				psmb5 (ENSPLAG00000017943) #25	PSMB11 (ENSPLAG00000000415) #24	prmt5 (ENSPLAG00000018154) #29	ap1g2 (ENSPLAG00000018173)	nedd8l (ENSPLAG00000018198)	zp3f.2 (ENSPLAG00000018207)	zp3f.1 (ENSPLAG00000018211)	homeza (ENSPLAG00000018214) #16	ENSPLAG00000018233 #17	dhrs1 (ENSPLAG00000018240)	si:ch211-14a17.11 (ENSPLAG00000018245) #21	ENSPLAG00000018253	ENSPLAG00000018260 #22	mmp14b (ENSPLAG00000018310) #33	ENSPLAG00000018320	ENSPLAG00000018335	cbln12 (ENSPLAG00000018359)	chd8 (ENSPLAG00000018522)	ENSPLAG00000018536	ENSPLAG00000018545
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000160062.a #31	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT01040000240894	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000160062.a #31	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT01040000240894	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Chinese medaka	MODERN SPECIES	442	ENSOSIG00000013126 #31	ENSOSIG00000013127	rem2 (ENSOSIG00000013129) #31	carmil3 (ENSOSIG00000013131)	CDH24 (ENSOSIG00000013132) #23	psmb5 (ENSOSIG00000013136) #25	PSMB11 (ENSOSIG00000013140) #24	prmt5 (ENSOSIG00000013241) #29	ap1g2 (ENSOSIG00000013345)	nedd8l (ENSOSIG00000013373)	zp3f.2 (ENSOSIG00000013376)	ENSOSIG00000013378 #17	homeza (ENSOSIG00000013380) #16	dhrs1 (ENSOSIG00000013384)	si:ch211-14a17.11 (ENSOSIG00000013461) #21	ENSOSIG00000003706 #22	mmp14b (ENSOSIG00000003768) #33	ENSOSIG00000004562	ENSOSIG00000004564	cbln12 (ENSOSIG00000004568)	chd8 (ENSOSIG00000004573)	ENSOSIG00000004722	ENSOSIG00000004727	ENSOSIG00000004730	casq1a (ENSOSIG00000004765)	selenoj (ENSOSIG00000006310)	eif2b5 (ENSOSIG00000006312)	ENSOSIG00000006664	ENSOSIG00000006678	klhl40a (ENSOSIG00000009002)	hhatla (ENSOSIG00000009003)
Japanese Medaka HdrR	MODERN SPECIES	8	rem2 (ENSORLG00000029976) #31	ENSORLG00000023282	carmil3 (ENSORLG00000012421)	ENSORLG00000012385 #23	psmb5 (ENSORLG00000026171) #25	ENSORLG00000022851 #24	prmt5 (ENSORLG00000012353) #29	ENSORLG00000027923	ap1g2 (ENSORLG00000012317)	zp3f.2 (ENSORLG00000012273)	zp3f.1 (ENSORLG00000012249)	ENSORLG00000012225 #17	homeza (ENSORLG00000012220) #16	dhrs1 (ENSORLG00000028592)	si:ch211-14a17.11 (ENSORLG00000022949) #21	ENSORLG00000012188 #22	mmp14b (ENSORLG00000012159) #33	ENSORLG00000026871	ENSORLG00000012133	cbln12 (ENSORLG00000012116)	chd8 (ENSORLG00000012103)	ENSORLG00000012065	ENSORLG00000012054	ENSORLG00000024307	casq1a (ENSORLG00000012045)	eif2b5 (ENSORLG00000011987)	ENSORLG00000011950	ENSORLG00000011942	klhl40a (ENSORLG00000011926)	hhatla (ENSORLG00000011907)	ctdsplb (ENSORLG00000011888)
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000004964	ENSGT00940000160062.a #31	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT01040000240894	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Indian medaka	MODERN SPECIES	10	ENSOMEG00000013624	rem2 (ENSOMEG00000013598) #31	ENSOMEG00000013587	carmil3 (ENSOMEG00000013557)	ENSOMEG00000013510	ENSOMEG00000013488 #23	psmb5 (ENSOMEG00000013456) #25	PSMB11 (ENSOMEG00000013392) #24	prmt5 (ENSOMEG00000013235) #29	ap1g2 (ENSOMEG00000013184)	nedd8l (ENSOMEG00000013114)	zp3f.2 (ENSOMEG00000013095)	homeza (ENSOMEG00000013056) #16	dhrs1 (ENSOMEG00000013046)	si:ch211-14a17.11 (ENSOMEG00000013029) #21	ENSOMEG00000013014 #22	mmp14b (ENSOMEG00000012965) #33	ENSOMEG00000012904	ENSOMEG00000012884	cbln12 (ENSOMEG00000012864)	chd8 (ENSOMEG00000012832)	ENSOMEG00000012678	ENSOMEG00000012639	ENSOMEG00000012615	casq1a (ENSOMEG00000012578)	selenoj (ENSOMEG00000012535)	eif2b5 (ENSOMEG00000012506)	ENSOMEG00000012475	ENSOMEG00000012443	klhl40a (ENSOMEG00000012349)	hhatla (ENSOMEG00000012297)
Javanese ricefish	MODERN SPECIES	8	ENSOJAG00000011931	dad1 (ENSOJAG00000011908)	abhd4 (ENSOJAG00000011882)	ENSOJAG00000011636	rem2 (ENSOJAG00000011612) #31	carmil3 (ENSOJAG00000011411)	ENSOJAG00000011202 #23	psmb5 (ENSOJAG00000011146) #25	ap1g2 (ENSOJAG00000010068)	nedd8l (ENSOJAG00000009946)	zp3f.2 (ENSOJAG00000009883)	ENSOJAG00000009754 #17	homeza (ENSOJAG00000009745) #16	dhrs1 (ENSOJAG00000009737)	si:ch211-14a17.11 (ENSOJAG00000009718) #21	ENSOJAG00000009703 #22	mmp14b (ENSOJAG00000008770) #33	ENSOJAG00000008630	ENSOJAG00000008616	cbln12 (ENSOJAG00000008558)	ENSOJAG00000006103	ENSOJAG00000006092	ENSOJAG00000006082	casq1a (ENSOJAG00000005659)	selenoj (ENSOJAG00000005609)	eif2b5 (ENSOJAG00000005558)	ENSOJAG00000005527	ENSOJAG00000005542	ENSOJAG00000005042	psmd5 (ENSOJAG00000004949)	klhl40a (ENSOJAG00000004930)
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00960000187060	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00960000187060	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00960000187060	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d.a	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00960000187060	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Burton s mouthbrooder	MODERN SPECIES	429	ENSHBUG00000003537	carmil3 (ENSHBUG00000003522)	CDH24 (ENSHBUG00000003454) #23	psmb5 (ENSHBUG00000003438) #25	PSMB11 (ENSHBUG00000003403) #24	prmt5 (ENSHBUG00000003185) #29	ap1g2 (ENSHBUG00000003123)	ENSHBUG00000003113	zp3f.2 (ENSHBUG00000003104)	zp3f.1 (ENSHBUG00000003059)	ENSHBUG00000003018 #17	homeza (ENSHBUG00000003001) #16	dhrs1 (ENSHBUG00000002997)	si:ch211-14a17.11 (ENSHBUG00000002988) #21	ENSHBUG00000002980	ENSHBUG00000002970 #22	mmp14b (ENSHBUG00000002951) #33	ENSHBUG00000002882	ENSHBUG00000002876	cbln12 (ENSHBUG00000002867)	chd8 (ENSHBUG00000002850)	ENSHBUG00000023786	ENSHBUG00000023780	ENSHBUG00000001181	casq1a (ENSHBUG00000023764)	selenoj (ENSHBUG00000023705)	eif2b5 (ENSHBUG00000023533)	ENSHBUG00000023511	ENSHBUG00000000795	klhl40a (ENSHBUG00000023487)	hhatla (ENSHBUG00000023449)
Haplochromini_A	ANCESTRAL SPECIES	48	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d.a	ENSGT00390000007438 #21	ENSGT01030000235234.a	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00960000187060	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a
Haplochromini_B	ANCESTRAL SPECIES	52	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00980000199831	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d.a	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00960000187060	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a
Zebra mbuna	MODERN SPECIES	1100	carmil3 (ENSMZEG00005013994)	ENSMZEG00005013953 #23	ENSMZEG00005013947	psmb5 (ENSMZEG00005013801) #25	PSMB11 (ENSMZEG00005012375) #24	prmt5 (ENSMZEG00005012334) #29	ENSMZEG00005012296	ap1g2 (ENSMZEG00005012243)	zp3f.2 (ENSMZEG00005012222)	zp3f.1 (ENSMZEG00005012205)	ENSMZEG00005012192	homeza (ENSMZEG00005012188) #16	dhrs1 (ENSMZEG00005012170)	ENSMZEG00005012163	si:ch211-14a17.11 (ENSMZEG00005012156) #21	ENSMZEG00005012139 #22	mmp14b (ENSMZEG00005012114) #33	ENSMZEG00005012103	ENSMZEG00005012097	cbln12 (ENSMZEG00005012090)	chd8 (ENSMZEG00005012027)	ENSMZEG00005012004	ENSMZEG00005011994	ENSMZEG00005011986	casq1a (ENSMZEG00005011971)	selenoj (ENSMZEG00005011962)	eif2b5 (ENSMZEG00005011930)	ENSMZEG00005011952	ENSMZEG00005011820	klhl40a (ENSMZEG00005011799)	hhatla (ENSMZEG00005011780)
Eastern happy	MODERN SPECIES	9	ENSACLG00000021188	rem2 (ENSACLG00000021141) #31	ENSACLG00000021135	carmil3 (ENSACLG00000020697)	ENSACLG00000020661 #23	psmb5 (ENSACLG00000020616) #25	PSMB11 (ENSACLG00000020225) #24	prmt5 (ENSACLG00000020188) #29	ap1g2 (ENSACLG00000020142)	ENSACLG00000020133	zp3f.2 (ENSACLG00000020065)	zp3f.1 (ENSACLG00000020039)	homeza (ENSACLG00000020035) #16	dhrs1 (ENSACLG00000019986)	si:ch211-14a17.11 (ENSACLG00000019977) #21	ENSACLG00000019938 #22	mmp14b (ENSACLG00000019878) #33	ENSACLG00000019867	cbln12 (ENSACLG00000019854)	chd8 (ENSACLG00000019692)	ENSACLG00000019657	ENSACLG00000019644	ENSACLG00000019628	casq1a (ENSACLG00000019591)	selenoj (ENSACLG00000019471)	eif2b5 (ENSACLG00000019387)	ENSACLG00000019442	ENSACLG00000019358	klhl40a (ENSACLG00000019345)	hhatla (ENSACLG00000019217)	ctdsplb (ENSACLG00000019144)
P. nyererei	MODERN SPECIES	393	carmil3 (ENSPNYG00000019499)	CDH24 (ENSPNYG00000019326) #23	psmb5 (ENSPNYG00000019288) #25	PSMB11 (ENSPNYG00000019144) #24	prmt5 (ENSPNYG00000019059) #29	ap1g2 (ENSPNYG00000018686)	ENSPNYG00000018424	zp3f.2 (ENSPNYG00000018379)	zp3f.1 (ENSPNYG00000018361)	ENSPNYG00000018324 #17	homeza (ENSPNYG00000018313) #16	dhrs1 (ENSPNYG00000018286)	ENSPNYG00000018255	si:ch211-14a17.11 (ENSPNYG00000018275) #21	ENSPNYG00000018234	ENSPNYG00000018220 #22	mmp14b (ENSPNYG00000018181) #33	cbln12 (ENSPNYG00000018153)	chd8 (ENSPNYG00000018020)	ENSPNYG00000017933	ENSPNYG00000017912	ENSPNYG00000017888	casq1a (ENSPNYG00000017862)	selenoj (ENSPNYG00000017824)	eif2b5 (ENSPNYG00000017764)	ENSPNYG00000017753	ENSPNYG00000017713	klhl40a (ENSPNYG00000017667)	hhatla (ENSPNYG00000017624)	ctdsplb (ENSPNYG00000017597)	plcd1b (ENSPNYG00000017564)
Lyretail cichlid	MODERN SPECIES	385	TGM1 (ENSNBRG00000018786)	ENSNBRG00000018695	rem2 (ENSNBRG00000018667) #31	carmil3 (ENSNBRG00000018587)	CDH24 (ENSNBRG00000018340) #23	psmb5 (ENSNBRG00000018286) #25	PSMB11 (ENSNBRG00000018149) #24	prmt5 (ENSNBRG00000018087) #29	ap1g2 (ENSNBRG00000018015)	nedd8l (ENSNBRG00000017992)	zp3f.2 (ENSNBRG00000017947)	zp3f.1 (ENSNBRG00000017898)	homeza (ENSNBRG00000017880) #16	dhrs1 (ENSNBRG00000017852)	si:ch211-14a17.11 (ENSNBRG00000017836) #21	ENSNBRG00000017740 #22	mmp14b (ENSNBRG00000017677) #33	ENSNBRG00000017645	cbln12 (ENSNBRG00000017547)	chd8 (ENSNBRG00000017428)	ENSNBRG00000017397	ENSNBRG00000017389	ENSNBRG00000017383	casq1a (ENSNBRG00000017364)	selenoj (ENSNBRG00000017343)	eif2b5 (ENSNBRG00000017303)	ENSNBRG00000017291	ENSNBRG00000017263	klhl40a (ENSNBRG00000017212)	hhatla (ENSNBRG00000017170)	ctdsplb (ENSNBRG00000017120)
Midas cichlid	MODERN SPECIES	567								prmt5 (ENSACIG00000005601) #29	ap1g2 (ENSACIG00000005658)	nedd8l (ENSACIG00000006026)	zp3f.2 (ENSACIG00000006039)	zp3f.1 (ENSACIG00000006100)	homeza (ENSACIG00000006128) #16	dhrs1 (ENSACIG00000006143)	si:ch211-14a17.11 (ENSACIG00000006199) #21	ENSACIG00000006218 #22	ENSACIG00000006332	mmp14b (ENSACIG00000006345) #33	ENSACIG00000006377	ENSACIG00000006397	chd8 (ENSACIG00000006440)	ENSACIG00000006682	ENSACIG00000006763	casq1a (ENSACIG00000006774)	selenoj (ENSACIG00000006804)	eif2b5 (ENSACIG00000006830)	ENSACIG00000006886	ENSACIG00000006933	klhl40a (ENSACIG00000007177)	hhatla (ENSACIG00000007266)	ctdsplb (ENSACIG00000007298)
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Pomacentridae_A	ANCESTRAL SPECIES	80	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Amphiprion	ANCESTRAL SPECIES	95	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Orange clownfish	MODERN SPECIES	1	rem2 (ENSAPEG00000019406) #31	carmil3 (ENSAPEG00000019429)	ENSAPEG00000019520 #23	psmb5 (ENSAPEG00000019669) #25	PSMB11 (ENSAPEG00000019690) #24	prmt5 (ENSAPEG00000019711) #29	ENSAPEG00000019771 #18	ap1g2 (ENSAPEG00000019801)	nedd8l (ENSAPEG00000019896)	zp3f.1 (ENSAPEG00000019923)	zp3f.2 (ENSAPEG00000019965)	ENSAPEG00000020012 #17	homeza (ENSAPEG00000020036) #16	dhrs1 (ENSAPEG00000020044)	si:ch211-14a17.11 (ENSAPEG00000020073) #21	ENSAPEG00000020100 #22	mmp14b (ENSAPEG00000020162) #33	ENSAPEG00000020215	ENSAPEG00000020221	cbln12 (ENSAPEG00000020241)	ENSAPEG00000020343	ENSAPEG00000020386	ENSAPEG00000020435	ENSAPEG00000020448	casq1a (ENSAPEG00000020459)	selenoj (ENSAPEG00000020498)	eif2b5 (ENSAPEG00000020580)	ENSAPEG00000020638	ENSAPEG00000020649	klhl40a (ENSAPEG00000020802)	hhatla (ENSAPEG00000020828)
Clown anemonefish	MODERN SPECIES	1680															si:ch211-14a17.11 (ENSAOCG00000016491) #21	ENSAOCG00000016504 #22	mmp14b (ENSAOCG00000016552) #33	ENSAOCG00000016559	cbln12 (ENSAOCG00000016593)	chd8 (ENSAOCG00000016793)	ENSAOCG00000016816	ENSAOCG00000016831	ENSAOCG00000016845	casq1a (ENSAOCG00000016902)	selenoj (ENSAOCG00000017037)	eif2b5 (ENSAOCG00000017129)	ENSAOCG00000017157	ENSAOCG00000017360	klhl40a (ENSAOCG00000017410)	hhatla (ENSAOCG00000017489)	ctdsplb (ENSAOCG00000017547)
Spiny chromis	MODERN SPECIES	283		ENSAPOG00000014579 #23	psmb5 (ENSAPOG00000014613) #25	PSMB11 (ENSAPOG00000014877) #24	prmt5 (ENSAPOG00000014972) #29	ENSAPOG00000015035 #18	ap1g2 (ENSAPOG00000015086)	nedd8l (ENSAPOG00000015112)	zp3f.2 (ENSAPOG00000015151)	zp3f.1 (ENSAPOG00000015196)	ENSAPOG00000015222 #17	homeza (ENSAPOG00000015230) #16	dhrs1 (ENSAPOG00000015267)	ENSAPOG00000015298	si:ch211-14a17.11 (ENSAPOG00000015319) #21	ENSAPOG00000015331 #22	mmp14b (ENSAPOG00000015341) #33	ENSAPOG00000015347	cbln12 (ENSAPOG00000015360)	chd8 (ENSAPOG00000015560)	ENSAPOG00000015607	ENSAPOG00000015633	ENSAPOG00000015651	casq1a (ENSAPOG00000015718)	selenoj (ENSAPOG00000015862)	eif2b5 (ENSAPOG00000001134)	ENSAPOG00000000447	ENSAPOG00000016021	klhl40a (ENSAPOG00000016031)	hhatla (ENSAPOG00000016093)
Bicolor damselfish	MODERN SPECIES	661							ENSSPAG00000023116 #18	ap1g2 (ENSSPAG00000023102)	ENSSPAG00000023097	zp3f.2 (ENSSPAG00000023057)	zp3f.1 (ENSSPAG00000023047)	ENSSPAG00000023041 #17	homeza (ENSSPAG00000023040) #16	dhrs1 (ENSSPAG00000023032)	si:ch211-14a17.11 (ENSSPAG00000023029) #21	ENSSPAG00000023019 #22	mmp14b (ENSSPAG00000023013) #33	ENSSPAG00000023009	cbln12 (ENSSPAG00000022980)	chd8 (ENSSPAG00000022956)	ENSSPAG00000022945	ENSSPAG00000022942	ENSSPAG00000022940	casq1a (ENSSPAG00000022936)	selenoj (ENSSPAG00000022926)	eif2b5 (ENSSPAG00000022919)	ENSSPAG00000022915	ENSSPAG00000022875	klhl40a (ENSSPAG00000022872)	hhatla (ENSSPAG00000022860)	ctdsplb (ENSSPAG00000022843)
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Seriola	ANCESTRAL SPECIES		ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000165806	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	51	CDH24 (ENSSDUG00000011668) #23	psmb5 (ENSSDUG00000011695) #25	PSMB11 (ENSSDUG00000011703) #24	prmt5 (ENSSDUG00000011753) #29	ENSSDUG00000011800 #18	ENSSDUG00000011845	ENSSDUG00000011900	ENSSDUG00000011979	zp3f.2 (ENSSDUG00000011997)	zp3f.1 (ENSSDUG00000012067)	ENSSDUG00000012085 #17	homeza (ENSSDUG00000012127) #16	dhrs1 (ENSSDUG00000012134)	si:ch211-14a17.11 (ENSSDUG00000012158) #21	ENSSDUG00000012164 #22	ENSSDUG00000012189 #22	mmp14b (ENSSDUG00000012237) #33	ENSSDUG00000012274	ENSSDUG00000012281	ENSSDUG00000012289	cbln12 (ENSSDUG00000012306)	chd8 (ENSSDUG00000012439)	ENSSDUG00000012572	ENSSDUG00000012589	ENSSDUG00000012601	casq1a (ENSSDUG00000012616)
Greater amberjack	MODERN SPECIES	51	carmil3 (ENSSDUG00000011440)	CDH24 (ENSSDUG00000011668) #23	psmb5 (ENSSDUG00000011695) #25	PSMB11 (ENSSDUG00000011703) #24	prmt5 (ENSSDUG00000011753) #29	ENSSDUG00000011800 #18	ENSSDUG00000011845	ENSSDUG00000011900	ENSSDUG00000011979	zp3f.2 (ENSSDUG00000011997)	zp3f.1 (ENSSDUG00000012067)	ENSSDUG00000012085 #17	homeza (ENSSDUG00000012127) #16	dhrs1 (ENSSDUG00000012134)	si:ch211-14a17.11 (ENSSDUG00000012158) #21	ENSSDUG00000012164 #22	ENSSDUG00000012189 #22	mmp14b (ENSSDUG00000012237) #33	ENSSDUG00000012274	ENSSDUG00000012281	ENSSDUG00000012289	cbln12 (ENSSDUG00000012306)	chd8 (ENSSDUG00000012439)	ENSSDUG00000012572	ENSSDUG00000012589	ENSSDUG00000012601	casq1a (ENSSDUG00000012616)
Yellowtail amberjack	MODERN SPECIES	3040		carmil3 (ENSSLDG00000000412)	CDH24 (ENSSLDG00000000549) #23	psmb5 (ENSSLDG00000000621) #25	PSMB11 (ENSSLDG00000000635) #24	prmt5 (ENSSLDG00000000781) #29	ENSSLDG00000000855 #18	ap1g2 (ENSSLDG00000000874)	ENSSLDG00000000888	zp3f.1 (ENSSLDG00000000945)	zp3f.2 (ENSSLDG00000001295)	ENSSLDG00000001438 #17	homeza (ENSSLDG00000001473) #16	dhrs1 (ENSSLDG00000001479)	si:ch211-14a17.11 (ENSSLDG00000001527) #21	ENSSLDG00000001566 #22	mmp14b (ENSSLDG00000001597) #33	ENSSLDG00000001653	ENSSLDG00000001662	cbln12 (ENSSLDG00000001667)	chd8 (ENSSLDG00000001679)	TOX4 (ENSSLDG00000001701)	ENSSLDG00000001713	ENSSLDG00000001726	casq1a (ENSSLDG00000001747)	selenoj (ENSSLDG00000001814)	eif2b5 (ENSSLDG00000001909)	ENSSLDG00000001968	ENSSLDG00000001978	klhl40a (ENSSLDG00000001994)	hhatla (ENSSLDG00000002011)
Barramundi perch	MODERN SPECIES	69	rem2 (ENSLCAG00010007501) #31	carmil3 (ENSLCAG00010007454)	ENSLCAG00010007397 #23	psmb5 (ENSLCAG00010007393) #25	PSMB11 (ENSLCAG00010007390) #24	prmt5 (ENSLCAG00010007248) #29	ENSLCAG00010007133 #18	ap1g2 (ENSLCAG00010006944)	ENSLCAG00010006890	zp3f.2 (ENSLCAG00010006880)	zp3f.1 (ENSLCAG00010006862)	homeza (ENSLCAG00010006853) #16	dhrs1 (ENSLCAG00010006845)	ENSLCAG00010006832	si:ch211-14a17.11 (ENSLCAG00010006824) #21	ENSLCAG00010006815 #22	mmp14b (ENSLCAG00010006807) #33	ENSLCAG00010006803	ENSLCAG00010006801	cbln12 (ENSLCAG00010006800)	chd8 (ENSLCAG00010006333)	ENSLCAG00010006179	ENSLCAG00010006174	ENSLCAG00010006171	casq1a (ENSLCAG00010006140)	selenoj (ENSLCAG00010006122)	eif2b5 (ENSLCAG00010006043)	ENSLCAG00010006010	ENSLCAG00010005911	klhl40a (ENSLCAG00010005883)	hhatla (ENSLCAG00010005871)
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a
Tongue sole	MODERN SPECIES	12	LRRC24 (ENSCSEG00000021115)	ENSCSEG00000021117	psmb5 (ENSCSEG00000021118) #25	PSMB11 (ENSCSEG00000021119) #24	prmt5 (ENSCSEG00000021126) #29	ENSCSEG00000021129 #18	ap1g2 (ENSCSEG00000021132)	nedd8l (ENSCSEG00000021137)	zp3f.2 (ENSCSEG00000021138)	zp3f.1 (ENSCSEG00000021139)	ENSCSEG00000021140 #17	homeza (ENSCSEG00000021141) #16	dhrs1 (ENSCSEG00000021142)	ENSCSEG00000021143	si:ch211-14a17.11 (ENSCSEG00000021144) #21	ENSCSEG00000021145 #22	mmp14b (ENSCSEG00000021146) #33	ENSCSEG00000021147	ENSCSEG00000021148	cbln12 (ENSCSEG00000021149)	chd8 (ENSCSEG00000021155)	ENSCSEG00000021159	exoc3 (ENSCSEG00000021161)	ENSCSEG00000021162	ENSCSEG00000021163	ENSCSEG00000021164	ENSCSEG00000021165	xkr4 (ENSCSEG00000021166)	tmem68 (ENSCSEG00000021167)	ENSCSEG00000021168	ENSCSEG00000021169
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000162556.E.a.m.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.B.d	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000162556.E.a.m.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000162556.E.a.m.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000160062.a #31	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000160062.a #31	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT00740000116468	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a
Lumpfish	MODERN SPECIES	8	zp3f.1 (ENSCLMG00005008982)	zp3f.1 (ENSCLMG00005008983)	ENSCLMG00005008984	ENSCLMG00005008985	ENSCLMG00005009019	zp3f.1 (ENSCLMG00005009028)	ENSCLMG00005009032	ENSCLMG00005009035	zp3f.1 (ENSCLMG00005009071)	ENSCLMG00005009073 #17	homeza (ENSCLMG00005009074) #16	dhrs1 (ENSCLMG00005009075)	dhrs1 (ENSCLMG00005009076)	KLHL10 (ENSCLMG00005009078)	si:ch211-14a17.11 (ENSCLMG00005009079) #21	ENSCLMG00005009080 #22	mmp14b (ENSCLMG00005009083) #33	ENSCLMG00005009572	cbln12 (ENSCLMG00005009574)	chd8 (ENSCLMG00005009595)	ENSCLMG00005011091	ENSCLMG00005011093	casq1a (ENSCLMG00005011095)	selenoj (ENSCLMG00005011098)	eif2b5 (ENSCLMG00005011110)	ENSCLMG00005011156	ENSCLMG00005011157	klhl40a (ENSCLMG00005011196)	ENSCLMG00005011491	ctdsplb (ENSCLMG00005011497)	plcd1b (ENSCLMG00005011537)
Stickleback	MODERN SPECIES	2	COL4A3 (ENSGACG00000013912)	COL4A4 (ENSGACG00000013929)	NYAP2 (ENSGACG00000013940)	ENSGACG00000013942	ENSGACG00000013943	gpc1b (ENSGACG00000013944)	EPHB1 (ENSGACG00000013951)	ENSGACG00000014008	pax3a (ENSGACG00000014017)	acsl3b (ENSGACG00000014028)	scg2b (ENSGACG00000014032)	ap1s3b (ENSGACG00000014035)	ENSGACG00000014043	CUL3 (ENSGACG00000014049)	si:ch211-14a17.11 (ENSGACG00000014060) #21	ENSGACG00000014063 #22	mmp14b (ENSGACG00000014069) #33	ENSGACG00000014075	ENSGACG00000014076	cbln12 (ENSGACG00000014086)	chd8 (ENSGACG00000014096)	ENSGACG00000014107	ENSGACG00000014113	ENSGACG00000014117	ENSGACG00000014121	casq1a (ENSGACG00000014122)	selenoj (ENSGACG00000014131)	eif2b5 (ENSGACG00000014136)	ENSGACG00000014164	dhrs1 (ENSGACG00000014168)	homeza (ENSGACG00000014188) #16
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT00390000004964	ENSGT00940000160062.a #31	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Pike perch	MODERN SPECIES	207															si:ch211-14a17.11 (ENSSLUG00000009344) #21	ENSSLUG00000009346 #22	mmp14b (ENSSLUG00000009371) #33	ENSSLUG00000009636	ENSSLUG00000009641	cbln12 (ENSSLUG00000009649)	chd8 (ENSSLUG00000009875)	ENSSLUG00000012967	ENSSLUG00000012970	ENSSLUG00000012974	casq1a (ENSSLUG00000012996)	selenoj (ENSSLUG00000013151)	eif2b5 (ENSSLUG00000013179)	ENSSLUG00000013561	ENSSLUG00000013570	klhl40a (ENSSLUG00000013577)	hhatla (ENSSLUG00000013582)
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000162556.E.a.m.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01070000253822.F	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000162556.E.a.m.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005011116 #23	psmb5 (ENSLCRG00005011115) #25	PSMB11 (ENSLCRG00005011085) #24	ENSLCRG00005011079 #18	prmt5 (ENSLCRG00005011045) #29	SLC7A8 (ENSLCRG00005011039) #18	ap1g2 (ENSLCRG00005008047)	nedd8l (ENSLCRG00005007989)	zp3f.2 (ENSLCRG00005007985)	zp3f.1 (ENSLCRG00005007977)	ENSLCRG00005007973 #17	homeza (ENSLCRG00005007972) #16	dhrs1 (ENSLCRG00005007970)	ENSLCRG00005007960	si:ch211-14a17.11 (ENSLCRG00005007953) #21	ENSLCRG00005007952 #22	mmp14b (ENSLCRG00005007947) #33	ENSLCRG00005007943	ENSLCRG00005007941	ENSLCRG00005007940	cbln12 (ENSLCRG00005007937)	chd8 (ENSLCRG00005005960)	ENSLCRG00005005938	ENSLCRG00005005936	ENSLCRG00005005935	ENSLCRG00005005934	ENSLCRG00005005932	casq1a (ENSLCRG00005005904)	selenoj (ENSLCRG00005005895)	selenoj (ENSLCRG00005005893)	eif2b5 (ENSLCRG00005005742)
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00940000160062.a #31	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a #23	ENSGT00940000157841 #25	ENSGT00940000162200.a.b #24	ENSGT00390000001141 #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b #16	ENSGT00940000157797	ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00400000023530.a	ENSGT00510000047568	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	6	psmb5 (ENSTNIG00000007949) #25	PSMB11 (ENSTNIG00000001142) #24	prmt5 (ENSTNIG00000007948) #29	ENSTNIG00000007947 #18	ap1g2 (ENSTNIG00000007946)	nedd8l (ENSTNIG00000007945)	zp3f.2 (ENSTNIG00000007944)	zp3f.1 (ENSTNIG00000007943)	homeza (ENSTNIG00000000498) #16	dhrs1 (ENSTNIG00000007942)	ENSTNIG00000007941	si:ch211-14a17.11 (ENSTNIG00000007940) #21	ENSTNIG00000007939 #22	dhrs1 (ENSTNIG00000007938)	si:ch211-14a17.11 (ENSTNIG00000007937) #21	ENSTNIG00000007936 #22	mmp14b (ENSTNIG00000007935) #33	ENSTNIG00000007934	ENSTNIG00000007933	cbln12 (ENSTNIG00000000841)	chd8 (ENSTNIG00000007932)	ENSTNIG00000007931	ENSTNIG00000000413	casq1a (ENSTNIG00000007930)	selenoj (ENSTNIG00000007929)	eif2b5 (ENSTNIG00000007928)	ENSTNIG00000007927	klhl40a (ENSTNIG00000007926)	hhatla (ENSTNIG00000007925)	ctdsplb (ENSTNIG00000007924)	plcd1b (ENSTNIG00000007923)
Tetraodon	MODERN SPECIES	6	ENSTNIG00000007952	carmil3 (ENSTNIG00000007951)	CDH24 (ENSTNIG00000007950) #23	psmb5 (ENSTNIG00000007949) #25	PSMB11 (ENSTNIG00000001142) #24	prmt5 (ENSTNIG00000007948) #29	ENSTNIG00000007947 #18	ap1g2 (ENSTNIG00000007946)	nedd8l (ENSTNIG00000007945)	zp3f.2 (ENSTNIG00000007944)	zp3f.1 (ENSTNIG00000007943)	homeza (ENSTNIG00000000498) #16	dhrs1 (ENSTNIG00000007942)	ENSTNIG00000007941	si:ch211-14a17.11 (ENSTNIG00000007940) #21	ENSTNIG00000007939 #22	dhrs1 (ENSTNIG00000007938)	si:ch211-14a17.11 (ENSTNIG00000007937) #21	ENSTNIG00000007936 #22	mmp14b (ENSTNIG00000007935) #33	ENSTNIG00000007934	ENSTNIG00000007933	cbln12 (ENSTNIG00000000841)	chd8 (ENSTNIG00000007932)	ENSTNIG00000007931	ENSTNIG00000000413	casq1a (ENSTNIG00000007930)	selenoj (ENSTNIG00000007929)	eif2b5 (ENSTNIG00000007928)	ENSTNIG00000007927	klhl40a (ENSTNIG00000007926)
Fugu	MODERN SPECIES	14	ENSTRUG00000000297	ENSTRUG00000030657	rem2 (ENSTRUG00000000259) #31	carmil3 (ENSTRUG00000017665)	ENSTRUG00000017632 #23	psmb5 (ENSTRUG00000032414) #25	PSMB11 (ENSTRUG00000032620) #24	prmt5 (ENSTRUG00000002234) #29	ENSTRUG00000003224 #18	ap1g2 (ENSTRUG00000004157)	ENSTRUG00000004916	homeza (ENSTRUG00000005126) #16	dhrs1 (ENSTRUG00000005200)	ENSTRUG00000029650	si:ch211-14a17.11 (ENSTRUG00000005451) #21	ENSTRUG00000023910 #22	mmp14b (ENSTRUG00000005793) #33	ENSTRUG00000026236	ENSTRUG00000030277	cbln12 (ENSTRUG00000032890)	chd8 (ENSTRUG00000006682)	ENSTRUG00000006959	ENSTRUG00000027861	ENSTRUG00000007394	casq1a (ENSTRUG00000020903)	selenoj (ENSTRUG00000007784)	ENSTRUG00000031848	ENSTRUG00000033086	klhl40a (ENSTRUG00000008522)	hhatla (ENSTRUG00000027448)	ctdsplb (ENSTRUG00000008918)
Pinecone sodierfish	MODERN SPECIES	8	psmb5 (ENSMMDG00005024428) #25	PSMB11 (ENSMMDG00005024426) #24	prmt5 (ENSMMDG00005024408) #29	ENSMMDG00005024318 #18	ap1g2 (ENSMMDG00005024276)	nedd8l (ENSMMDG00005024269)	zp3f.2 (ENSMMDG00005024267)	zp3f.1 (ENSMMDG00005024263)	ENSMMDG00005024260 #17	homeza (ENSMMDG00005024259) #16	dhrs1 (ENSMMDG00005024258)	ENSMMDG00005024256	ENSMMDG00005024255	ENSMMDG00005024254	si:ch211-14a17.11 (ENSMMDG00005024253) #21	ENSMMDG00005024252 #22	mmp14b (ENSMMDG00005024236) #33	ENSMMDG00005024226	ENSMMDG00005024224	cbln12 (ENSMMDG00005024223)	chd8 (ENSMMDG00005024149)	acss2l (ENSMMDG00005024138)	ndufv2 (ENSMMDG00005024136)	ankrd12 (ENSMMDG00005023985)	twsg1a (ENSMMDG00005023976)	ralbp1 (ENSMMDG00005023971)	RAB31 (ENSMMDG00005023967)	ENSMMDG00005023965	vapal (ENSMMDG00005023964)	APCDD1 (ENSMMDG00005023963)	ENSMMDG00005023960
Cod	MODERN SPECIES	21	klhl20 (ENSGMOG00000014816)	ENSGMOG00000009614	DARS2 (ENSGMOG00000016195)	ENSGMOG00000016230	ENSGMOG00000016250	ENSGMOG00000030662	ENSGMOG00000002258 #10	ENSGMOG00000002171 #9	ENSGMOG00000010219	ENSGMOG00000026769	MPLKIP (ENSGMOG00000025037)	ENSGMOG00000022761	homeza (ENSGMOG00000032787) #16	dhrs1 (ENSGMOG00000014739)	si:ch211-14a17.11 (ENSGMOG00000014857) #21	ENSGMOG00000025886 #22	mmp14b (ENSGMOG00000015003) #33	ENSGMOG00000034633	ENSGMOG00000015049	cbln12 (ENSGMOG00000027463)	chd8 (ENSGMOG00000015075)	ENSGMOG00000015161	ENSGMOG00000015192	ENSGMOG00000034494	casq1a (ENSGMOG00000015204)	ENSGMOG00000015264	ENSGMOG00000015337	ENSGMOG00000015305	ENSGMOG00000035218	ENSGMOG00000002209	klhl40a (ENSGMOG00000032161)
Protacanthopterygii	ANCESTRAL SPECIES	14														ENSGT01040000240385.C	ENSGT00390000007438 #21	ENSGT00710000106790.x #22	ENSGT00940000157808.g #33	ENSGT00940000155384.b.a	ENSGT00940000164014.b	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00530000064692.A	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a.c.b	ENSGT00390000019377.a.a.a	ENSGT00950000182900.D	ENSGT00940000156907.p.b.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	72	ENSGT01050000244848.C.b.j	ENSGT01050000244939.a.a.b.a.a.d	ENSGT00390000004964	ENSGT00940000160062.a.c #31	ENSGT01100000263518.C	ENSGT00940000157990.a.a.c	ENSGT00940000159567.a.a.c #23	ENSGT00940000157841.e.b #25	ENSGT00940000162200.a.b.e #24	ENSGT00390000001141.c #29	ENSGT00950000182838.B.a.b.o	ENSGT00940000165806.j.a	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b.c #16	ENSGT00940000157797	ENSGT00710000106790.x.k #22	ENSGT00940000157808.g.e #33	ENSGT00940000155384.b.a.a	ENSGT00940000165001.a.b.t.b	ENSGT00940000164991.a.b.b	ENSGT00530000064692.A.c	ENSGT00940000153649.B.e	ENSGT00940000154888.a.d	ENSGT00940000165001.a.a	ENSGT00950000182774.b.b.b	ENSGT00390000019377.a.a.a.g	ENSGT00990000211065	ENSGT00950000182900.D.g	ENSGT00940000156907.p.b.a.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a.d
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT01050000244939.a.a.b.a.a.d	ENSGT00390000004964	ENSGT00940000160062.a.c #31	ENSGT01100000263518.C	ENSGT00940000157990.a.a.c	ENSGT00940000159567.a.a.c #23	ENSGT00940000157841.e.b #25	ENSGT00940000162200.a.b.e #24	ENSGT00390000001141.c #29	ENSGT00950000182838.B.a.b.o	ENSGT00940000165806.j.a	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b.c #16	ENSGT00940000157797	ENSGT01000000219181	ENSGT00710000106790.x.k #22	ENSGT00940000157808.g.e #33	ENSGT00940000155384.b.a.a	ENSGT00940000165001.a.b.t.b	ENSGT00940000164991.a.b.b	ENSGT00530000064692.A.c	ENSGT00940000153649.B.e	ENSGT00390000012563.d	ENSGT00940000154888.a.d	ENSGT00940000165001.a.a	ENSGT00940000172304	ENSGT00390000019377.a.a.a.g	ENSGT00990000211065	ENSGT00950000182900.D.g	ENSGT00940000156907.p.b.a.a	ENSGT01030000234599.a.b.d.a.b.b
Salmo	ANCESTRAL SPECIES	5	ENSGT00390000004964	ENSGT00940000160062.a.c #31	ENSGT01100000263518.C	ENSGT00940000157990.a.a.c	ENSGT00940000159567.a.a.c #23	ENSGT00940000157841.e.b #25	ENSGT00940000162200.a.b.e #24	ENSGT00390000001141.c #29	ENSGT00940000158278.e.b.d #18	ENSGT00950000182838.B.a.b.o	ENSGT00940000165806.j.a	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b.c #16	ENSGT00940000157797	ENSGT01000000219181	ENSGT00710000106790.x.k #22	ENSGT00940000157808.g.e #33	ENSGT00940000155384.b.a.a	ENSGT00940000165001.a.b.t.b	ENSGT00940000164991.a.b.b	ENSGT00530000064692.A.c	ENSGT00940000153649.B.e	ENSGT00390000012563.d	ENSGT00940000154888.a.d	ENSGT00940000165001.a.a	ENSGT01100000263533.b.b.b.a.b.a.a.c.b.a	ENSGT00390000019377.a.a.a.g	ENSGT00990000211065	ENSGT00950000182900.D.g	ENSGT00940000156907.p.b.a.a	ENSGT01030000234599.a.b.d.a.b.b
River trout	MODERN SPECIES	24	ENSSTUG00000007675	TGM1 (ENSSTUG00000007688)	ENSSTUG00000007982	rem2 (ENSSTUG00000008008) #31	ENSSTUG00000008017	carmil3 (ENSSTUG00000008028)	ENSSTUG00000008088 #23	psmb5 (ENSSTUG00000008137) #25	ENSSTUG00000008182 #24	prmt5 (ENSSTUG00000008225) #29	ap1g2 (ENSSTUG00000009504)	ENSSTUG00000010249	zp3f.1 (ENSSTUG00000010261)	homeza (ENSSTUG00000010333) #16	dhrs1 (ENSSTUG00000010338)	ENSSTUG00000010365 #22	ENSSTUG00000010406	mmp14b (ENSSTUG00000010419) #33	ENSSTUG00000010473	ENSSTUG00000010476	cbln12 (ENSSTUG00000010488)	ENSSTUG00000010494	chd8 (ENSSTUG00000010567)	NOP10 (ENSSTUG00000013077)	ENSSTUG00000013085	ENSSTUG00000013117	ENSSTUG00000013143	casq1a (ENSSTUG00000013154)	ENSSTUG00000013202	ENSSTUG00000013210	ENSSTUG00000013222
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000037434 #23	psmb5 (ENSSSAG00000071636) #25	ENSSSAG00000071634	ENSSSAG00000064913	ENSSSAG00000071632 #24	prmt5 (ENSSSAG00000071581) #29	ENSSSAG00000071560 #18	ap1g2 (ENSSSAG00000067945)	ENSSSAG00000067816	zp3f.1 (ENSSSAG00000067805)	homeza (ENSSSAG00000067787) #16	ENSSSAG00000105028	dhrs1 (ENSSSAG00000067779)	ENSSSAG00000120731	ENSSSAG00000086736	ENSSSAG00000120516 #22	mmp14b (ENSSSAG00000067758) #33	ENSSSAG00000067752	ENSSSAG00000067750	ENSSSAG00000067742	chd8 (ENSSSAG00000064186)	ENSSSAG00000064123	ENSSSAG00000064120	ENSSSAG00000064114	casq1a (ENSSSAG00000064083)	ENSSSAG00000064076	ENSSSAG00000064036	ENSSSAG00000064008	ENSSSAG00000063976	ENSSSAG00000063950	ENSSSAG00000063946
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT01050000244939.a.a.b.a.a.d	ENSGT00390000004964	ENSGT00940000160062.a.c #31	ENSGT01100000263518.C	ENSGT00940000157990.a.a.c	ENSGT00940000159567.a.a.c #23	ENSGT00940000157841.e.b #25	ENSGT00940000162200.a.b.e #24	ENSGT00390000001141.c #29	ENSGT00950000182838.B.a.b.o	ENSGT00940000165806.j.a	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b.c #16	ENSGT00940000157797	ENSGT01000000219181	ENSGT00710000106790.x.k #22	ENSGT00940000157808.g.e #33	ENSGT00940000155384.b.a.a	ENSGT00940000165001.a.b.t.b	ENSGT00940000164991.a.b.b	ENSGT00530000064692.A.c	ENSGT00940000153649.B.e	ENSGT00390000012563.d	ENSGT00940000154888.a.d	ENSGT00940000165001.a.a	ENSGT00940000172304	ENSGT00390000019377.a.a.a.g	ENSGT00950000182900.D.g	ENSGT00940000156907.p.b.a.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a.d
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000066569	ENSOMYG00000042004	rem2 (ENSOMYG00000042012) #31	carmil3 (ENSOMYG00000042024)	ENSOMYG00000053727	ENSOMYG00000042048 #23	ENSOMYG00000051538	psmb5 (ENSOMYG00000042074) #25	ENSOMYG00000042080 #24	prmt5 (ENSOMYG00000042146) #29	ENSOMYG00000042295	nedd8l (ENSOMYG00000042393)	homeza (ENSOMYG00000042404) #16	dhrs1 (ENSOMYG00000042410)	ENSOMYG00000075451	ENSOMYG00000042433 #22	ENSOMYG00000076672	mmp14b (ENSOMYG00000042457) #33	ENSOMYG00000042477	cbln12 (ENSOMYG00000042484)	ENSOMYG00000042487	ENSOMYG00000069563	chd8 (ENSOMYG00000042672)	ENSOMYG00000070191	ENSOMYG00000043981	ENSOMYG00000043992	si:rp71-1g18.1 (ENSOMYG00000052196)	casq1a (ENSOMYG00000044046)	ENSOMYG00000048504	ENSOMYG00000044282	ENSOMYG00000044304
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT01050000244939.a.a.b.a.a.d	ENSGT00390000004964	ENSGT00940000160062.a.c #31	ENSGT01100000263518.C	ENSGT00940000157990.a.a.c	ENSGT00940000159567.a.a.c #23	ENSGT00940000157841.e.b #25	ENSGT00940000162200.a.b.e #24	ENSGT00390000001141.c #29	ENSGT00950000182838.B.a.b.o	ENSGT00940000165806.j.a	ENSGT01030000234567.A.b.c	ENSGT00950000182893.a.b.e.b.c #16	ENSGT00940000157797	ENSGT01000000219181	ENSGT00710000106790.x.k #22	ENSGT00940000157808.g.e #33	ENSGT00940000155384.b.a.a	ENSGT00940000165001.a.b.t.b	ENSGT00940000164991.a.b.b	ENSGT00530000064692.A.c	ENSGT00940000153649.B.e	ENSGT00390000012563.d	ENSGT00940000154888.a.d	ENSGT00940000165001.a.a	ENSGT00940000172304	ENSGT00390000019377.a.a.a.g	ENSGT00950000182900.D.g	ENSGT00940000156907.p.b.a.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a.d
Coho salmon	MODERN SPECIES	19	TGM1 (ENSOKIG00005050743)	ENSOKIG00005050757	ENSOKIG00005050762	rem2 (ENSOKIG00005050765) #31	ENSOKIG00005050767	carmil3 (ENSOKIG00005050773)	CDH24 (ENSOKIG00005050782) #23	psmb5 (ENSOKIG00005050784) #25	PSMB11 (ENSOKIG00005050787) #24	prmt5 (ENSOKIG00005050797) #29	ap1g2 (ENSOKIG00005050810)	ENSOKIG00005050818	zp3f.1 (ENSOKIG00005050821)	homeza (ENSOKIG00005050824) #16	dhrs1 (ENSOKIG00005050826)	ENSOKIG00005050828 #22	ENSOKIG00005050831	mmp14b (ENSOKIG00005050833) #33	ENSOKIG00005050838	ENSOKIG00005050840	cbln12 (ENSOKIG00005050842)	chd8 (ENSOKIG00005050846)	NOP10 (ENSOKIG00005050866)	ENSOKIG00005050867	ENSOKIG00005050868	ENSOKIG00005050869	casq1a (ENSOKIG00005015896)	ENSOKIG00005015931	ENSOKIG00005015970	ENSOKIG00005016019	apol1 (ENSOKIG00005016059)
Chinook salmon	MODERN SPECIES	20	rem2 (ENSOTSG00005047904) #31	ENSOTSG00005047905	CDH24 (ENSOTSG00005047907) #23	psmb5 (ENSOTSG00005047908) #25	ENSOTSG00005047909	ENSOTSG00005047910	PSMB11 (ENSOTSG00005047911) #24	prmt5 (ENSOTSG00005047912) #29	ap1g2 (ENSOTSG00005047916)	ENSOTSG00005007206	zp3f.1 (ENSOTSG00005007207)	homeza (ENSOTSG00005007209) #16	dhrs1 (ENSOTSG00005007210)	ENSOTSG00005007213	mmp14b (ENSOTSG00005007212) #33	ENSOTSG00005007215 #22	ENSOTSG00005007216	ENSOTSG00005007218	ENSOTSG00005007219	cbln12 (ENSOTSG00005007220)	ENSOTSG00005007221	chd8 (ENSOTSG00005007245)	NOP10 (ENSOTSG00005012119)	ENSOTSG00005012121	ENSOTSG00005012122	si:rp71-1g18.1 (ENSOTSG00005012123)	casq1a (ENSOTSG00005012125)	ENSOTSG00005012150	ENSOTSG00005012151	ENSOTSG00005012154	apol1 (ENSOTSG00005012155)
Huchen	MODERN SPECIES	708						ENSHHUG00000052178	psmb5 (ENSHHUG00000052176) #25	PSMB11 (ENSHHUG00000052172) #24	prmt5 (ENSHHUG00000052165) #29	ENSHHUG00000052158 #18	ap1g2 (ENSHHUG00000052123)	ENSHHUG00000052107	zp3f.1 (ENSHHUG00000052103)	homeza (ENSHHUG00000052100) #16	dhrs1 (ENSHHUG00000052095)	ENSHHUG00000052094 #22	ENSHHUG00000052093	mmp14b (ENSHHUG00000052092) #33	ENSHHUG00000052091	ENSHHUG00000052089	cbln12 (ENSHHUG00000052086)	ENSHHUG00000052085	chd8 (ENSHHUG00000052047)	ENSHHUG00000052039	ENSHHUG00000052035	ENSHHUG00000052033	casq1a (ENSHHUG00000052020)	ENSHHUG00000052018	ENSHHUG00000052007	ENSHHUG00000052001	ENSHHUG00000051982
Salmoninae	ANCESTRAL SPECIES	24	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00940000160062.a.d #31	ENSGT00940000157990.a.a.d	ENSGT00940000159567.a.a.d #23	ENSGT00940000157841.e.a #25	ENSGT00940000162200.a.b.f #24	ENSGT00390000001141.d #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b.p	ENSGT00940000165806.j.b	ENSGT01030000234567.A.b.d	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b.d #16	ENSGT01040000240385.C	ENSGT00390000007438.`b #21	ENSGT00710000106790.x.l #22	ENSGT00940000157808.g.f #33	ENSGT00940000155384.b.a.b	ENSGT00940000164014.b	ENSGT00940000165001.a.b.t.a	ENSGT00940000164991.a.b.a	ENSGT00530000064692.A.d	ENSGT00940000153649.B.f	ENSGT00940000154888.a.c	ENSGT01100000263533.b.b.b.a.b.a.a.c.b	ENSGT00390000019377.a.a.a.h	ENSGT00950000182900.D.h	ENSGT00940000158605.t	ENSGT00940000156907.p.b.a.b	ENSGT01030000234599.a.b.d.b.a.a.c	ENSGT00940000166346.c
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5416														ENSHHUG00000003709	si:ch211-14a17.11 (ENSHHUG00000003751) #21	ENSHHUG00000003763 #22	ENSHHUG00000003798 #22	mmp14b (ENSHHUG00000003807) #33
Huchen	MODERN SPECIES	5416													ENSHHUG00000003709	si:ch211-14a17.11 (ENSHHUG00000003751) #21	ENSHHUG00000003763 #22	ENSHHUG00000003798 #22	mmp14b (ENSHHUG00000003807) #33
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00940000160062.a.d #31	ENSGT00940000157990.a.a.d	ENSGT00940000159567.a.a.d #23	ENSGT00940000157841.e.a #25	ENSGT00940000162200.a.b.f #24	ENSGT00390000001141.d #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b.p	ENSGT00940000165806.j.b	ENSGT01030000234567.A.b.d	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b.d #16	ENSGT01040000240385.C	ENSGT00390000007438.`b #21	ENSGT00710000106790.x.l #22	ENSGT00940000157808.g.f #33	ENSGT00940000155384.b.a.b	ENSGT00940000164014.b	ENSGT00940000165001.a.b.t.a	ENSGT00940000164991.a.b.a	ENSGT00530000064692.A.d	ENSGT00940000153649.B.f	ENSGT00940000154888.a.c	ENSGT01100000263533.b.b.b.a.b.a.a.c.b	ENSGT00390000019377.a.a.a.h	ENSGT00950000182900.D.h	ENSGT00940000158605.t	ENSGT00940000156907.p.b.a.b	ENSGT01030000234599.a.b.d.b.a.a.c	ENSGT00940000166346.c
Salmo	ANCESTRAL SPECIES	21	ENSGT00940000160062.a.d #31	ENSGT00940000157990.a.a.d	ENSGT00940000159567.a.a.d #23	ENSGT00940000157841.e.a #25	ENSGT00940000162200.a.b.f #24	ENSGT00390000001141.d #29	ENSGT00940000158278.e.b.c #18	ENSGT00950000182838.B.a.b.p	ENSGT00940000165806.j.b	ENSGT01030000234567.A.b.d	ENSGT00990000214019	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b.d #16	ENSGT01040000240385.C	ENSGT00390000007438.`b #21	ENSGT00710000106790.x.l #22	ENSGT00940000157808.g.f #33	ENSGT00940000155384.b.a.b	ENSGT00940000165001.a.b.t.a	ENSGT00940000164014.b	ENSGT00940000164991.a.b.a	ENSGT00530000064692.A.d	ENSGT00940000153649.B.f	ENSGT00940000154888.a.c	ENSGT01100000263533.b.b.b.a.b.a.a.c.b.b	ENSGT00390000019377.a.a.a.h	ENSGT00950000182900.D.h	ENSGT00940000158605.t	ENSGT00940000156907.p.b.a.b	ENSGT01030000234599.a.b.d.b.a.a.c	ENSGT00940000166346.c
River trout	MODERN SPECIES	13	rem2 (ENSSTUG00000010037) #31	carmil3 (ENSSTUG00000009696)	CDH24 (ENSSTUG00000009657) #23	psmb5 (ENSSTUG00000009649) #25	prmt5 (ENSSTUG00000009454) #29	ENSSTUG00000009276 #18	ap1g2 (ENSSTUG00000008949)	zp3f.2 (ENSSTUG00000008912)	ENSSTUG00000008826	zp3f.2 (ENSSTUG00000008729)	ENSSTUG00000008683	ENSSTUG00000008667 #17	homeza (ENSSTUG00000008664) #16	ENSSTUG00000008466	si:ch211-14a17.11 (ENSSTUG00000008426) #21	ENSSTUG00000008404 #22	mmp14b (ENSSTUG00000008337) #33	ENSSTUG00000008328	ENSSTUG00000008323	ENSSTUG00000008315	cbln12 (ENSSTUG00000008305)	ENSSTUG00000008302	ENSSTUG00000007848	ENSSTUG00000007785	ENSSTUG00000007776	casq1a (ENSSTUG00000007681)	ENSSTUG00000007657	ENSSTUG00000007615	ENSSTUG00000007599	zgc:55733 (ENSSTUG00000007571)	apol1 (ENSSTUG00000007540)
Atlantic salmon	MODERN SPECIES	5	psmb5 (ENSSSAG00000101138) #25	ENSSSAG00000048190 #18	zp3f.2 (ENSSSAG00000022880)	ap1g2 (ENSSSAG00000032035)	zp3f.2 (ENSSSAG00000097451)	zp3f.2 (ENSSSAG00000098828)	NEDD8 (ENSSSAG00000028979)	zp3f.2 (ENSSSAG00000104954)	zp3f.2 (ENSSSAG00000113336)	zp3f.2 (ENSSSAG00000020693)	ENSSSAG00000024914	ENSSSAG00000114252 #17	homez (ENSSSAG00000098522) #16	ENSSSAG00000084735	si:ch211-14a17.11 (ENSSSAG00000024251) #21	ENSSSAG00000023545 #22	mmp14b (ENSSSAG00000017327) #33	ENSSSAG00000105855	ENSSSAG00000090707	ENSSSAG00000016848	chd8 (ENSSSAG00000007043)	ENSSSAG00000006918	ENSSSAG00000090059	ENSSSAG00000082573	casq1a (ENSSSAG00000006477)	ENSSSAG00000006254	ENSSSAG00000114979	ENSSSAG00000006210	ENSSSAG00000105696	ENSSSAG00000006118	ENSSSAG00000006048
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00390000016277.b	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00940000160062.a.d #31	ENSGT00940000157990.a.a.d	ENSGT00940000159567.a.a.d #23	ENSGT00940000157841.e.a #25	ENSGT00940000162200.a.b.f #24	ENSGT00390000001141.d #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b.p	ENSGT00940000165806.j.b	ENSGT01030000234567.A.b.d.p.a.b	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b.d #16	ENSGT00390000007438.`b #21	ENSGT00710000106790.x.l #22	ENSGT00940000157808.g.f #33	ENSGT00940000155384.b.a.b	ENSGT00940000164014.b	ENSGT00940000165001.a.b.t.a	ENSGT00940000164991.a.b.a	ENSGT00530000064692.A.d	ENSGT00940000153649.B.f	ENSGT00940000154888.a.c	ENSGT01100000263533.b.b.b.a.b.a.a.c.b	ENSGT00390000019377.a.a.a.h	ENSGT00950000182900.D.h	ENSGT00940000158605.t	ENSGT00940000156907.p.b.a.b	ENSGT01030000234599.a.b.d.b.a.a.c	ENSGT00940000166346.c
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00390000016277.b	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00940000160062.a.d #31	ENSGT00940000157990.a.a.d	ENSGT00940000159567.a.a.d #23	ENSGT00940000157841.e.a #25	ENSGT00940000162200.a.b.f #24	ENSGT00390000001141.d #29	ENSGT00940000158278.e.b #18	ENSGT00950000182838.B.a.b.p	ENSGT00940000165806.j.b	ENSGT01030000234567.A.b.d.o.a.a	ENSGT00740000115581.e #17	ENSGT00950000182893.a.b.e.b.d #16	ENSGT00390000007438.`b #21	ENSGT00710000106790.x.l #22	ENSGT00940000157808.g.f #33	ENSGT00940000155384.b.a.b	ENSGT00940000164014.b	ENSGT00940000165001.a.b.t.a	ENSGT00940000164991.a.b.a	ENSGT00530000064692.A.d	ENSGT00940000153649.B.f	ENSGT00940000154888.a.c	ENSGT01100000263533.b.b.b.a.b.a.a.c.b	ENSGT00390000019377.a.a.a.h	ENSGT00950000182900.D.h	ENSGT00940000158605.t	ENSGT00940000156907.p.b.a.b	ENSGT01030000234599.a.b.d.b.a.a.c	ENSGT00940000166346.c
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005039555	mcm6 (ENSOTSG00005039552)	ENSOTSG00005039551	abhd4 (ENSOTSG00005039550)	ENSOTSG00005039186	rem2 (ENSOTSG00005039162) #31	carmil3 (ENSOTSG00005039156)	ENSOTSG00005039151	ENSOTSG00005039150	ENSOTSG00005039146 #17	homeza (ENSOTSG00005039145) #16	ENSOTSG00005039144	si:ch211-14a17.11 (ENSOTSG00005039139) #21	ENSOTSG00005039138 #22	mmp14b (ENSOTSG00005039135) #33	ENSOTSG00005039133 #22	ENSOTSG00005039131	ENSOTSG00005039130	ENSOTSG00005039128	cbln12 (ENSOTSG00005039126)	ENSOTSG00005039125	chd8 (ENSOTSG00005037613)	TOX4 (ENSOTSG00005037604)	ENSOTSG00005037601	ENSOTSG00005037598	ENSOTSG00005037594	zgc:55733 (ENSOTSG00005037263)	apol1 (ENSOTSG00005037258)	zgc:66427 (ENSOTSG00005037257)	ENSOTSG00005037255	parp2 (ENSOTSG00005037243)
Chinook salmon	MODERN SPECIES	1	catip (ENSOTSG00005039561)	tmbim1a (ENSOTSG00005039558)	ENSOTSG00005039555	mcm6 (ENSOTSG00005039552)	ENSOTSG00005039551	abhd4 (ENSOTSG00005039550)	ENSOTSG00005039186	rem2 (ENSOTSG00005039162) #31	carmil3 (ENSOTSG00005039156)	ENSOTSG00005039151	ENSOTSG00005039150	ENSOTSG00005039146 #17	homeza (ENSOTSG00005039145) #16	ENSOTSG00005039144	si:ch211-14a17.11 (ENSOTSG00005039139) #21	ENSOTSG00005039138 #22	mmp14b (ENSOTSG00005039135) #33	ENSOTSG00005039133 #22	ENSOTSG00005039131	ENSOTSG00005039130	ENSOTSG00005039128	cbln12 (ENSOTSG00005039126)	ENSOTSG00005039125	chd8 (ENSOTSG00005037613)	TOX4 (ENSOTSG00005037604)	ENSOTSG00005037601	ENSOTSG00005037598	ENSOTSG00005037594	zgc:55733 (ENSOTSG00005037263)	apol1 (ENSOTSG00005037258)	zgc:66427 (ENSOTSG00005037257)
Coho salmon	MODERN SPECIES	23	psmb5 (ENSOKIG00005039910) #25	PSMB11 (ENSOKIG00005039888) #24	prmt5 (ENSOKIG00005038649) #29	ENSOKIG00005038452 #18	ENSOKIG00005038430	ap1g2 (ENSOKIG00005043959)	ENSOKIG00005043805	zp3f.2 (ENSOKIG00005043785)	zp3f.2 (ENSOKIG00005043753)	zp3f.2 (ENSOKIG00005043728)	zp3f.2 (ENSOKIG00005043686)	homeza (ENSOKIG00005043661) #16	ENSOKIG00005043650	ENSOKIG00005043286	si:ch211-14a17.11 (ENSOKIG00005043208) #21	ENSOKIG00005043167 #22	mmp14b (ENSOKIG00005043070) #33	ENSOKIG00005043040	ENSOKIG00005043020	ENSOKIG00005043011	cbln12 (ENSOKIG00005042988)	chd8 (ENSOKIG00005042298)	TOX4 (ENSOKIG00005042184)	ENSOKIG00005042139	casq1a (ENSOKIG00005042063)	ENSOKIG00005041997	ENSOKIG00005041916	ENSOKIG00005041855	ENSOKIG00005041840	zgc:55733 (ENSOKIG00005041777)	ENSOKIG00005041767
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000077590 #24	ENSOMYG00000060157	prmt5 (ENSOMYG00000027919) #29	ENSOMYG00000027155 #18	ap1g2 (ENSOMYG00000024799)	ENSOMYG00000024315	zp3f.2 (ENSOMYG00000024287)	zp3f.2 (ENSOMYG00000051921)	zp3f.2 (ENSOMYG00000054284)	zp3f.2 (ENSOMYG00000063721)	zp3f.2 (ENSOMYG00000051100)	zp3f.2 (ENSOMYG00000075781)	homeza (ENSOMYG00000024272) #16	ENSOMYG00000070594	si:ch211-14a17.11 (ENSOMYG00000024229) #21	ENSOMYG00000024202 #22	mmp14b (ENSOMYG00000024040) #33	ENSOMYG00000002633	ENSOMYG00000023981	ENSOMYG00000023970	ENSOMYG00000023951	cbln12 (ENSOMYG00000023923)	ENSOMYG00000023913	chd8 (ENSOMYG00000023744)	ENSOMYG00000023644	ENSOMYG00000072667	casq1a (ENSOMYG00000023546)	ENSOMYG00000064010	ENSOMYG00000023480	ENSOMYG00000023447	ENSOMYG00000023399
Northern pike	MODERN SPECIES	2	rem2 (ENSELUG00000005002) #31	carmil3 (ENSELUG00000004977)	ENSELUG00000004935 #23	psmb5 (ENSELUG00000028174) #25	PSMB11 (ENSELUG00000004833) #24	prmt5 (ENSELUG00000004788) #29	ENSELUG00000004728 #18	ap1g2 (ENSELUG00000004678)	ENSELUG00000004617	dhrs1 (ENSELUG00000004588)	homeza (ENSELUG00000027804) #16	zp3f.1 (ENSELUG00000004558)	ENSELUG00000033867	ENSELUG00000033200	lg03h14orf119 (ENSELUG00000004544) #21	ENSELUG00000004511 #22	mmp14b (ENSELUG00000000130) #33	ENSELUG00000004389	ENSELUG00000004353	ENSELUG00000004366	cbln12 (ENSELUG00000004345)	ENSELUG00000004336	chd8 (ENSELUG00000004302)	ENSELUG00000026296	ENSELUG00000004214	ENSELUG00000004195	ENSELUG00000029696	casq1a (ENSELUG00000004172)	DCAF8 (ENSELUG00000004151)	zgc:55733 (ENSELUG00000004132)	apol1 (ENSELUG00000004105)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	10	chd8 (ENSECRG00000004270)	ENSECRG00000004304	ENSECRG00000004309	ENSECRG00000004432 #10	oxa1l (ENSECRG00000004677) #36	slc7a7 (ENSECRG00000004709) #35	ENSECRG00000004733	CCNB1IP1 (ENSECRG00000004739)	ENSECRG00000004742	ttc5 (ENSECRG00000004750)	mettl3 (ENSECRG00000004761)	mettl3 (ENSECRG00000004772)	ENSECRG00000004789	ENSECRG00000004800 #12	si:ch211-14a17.11 (ENSECRG00000004809) #21	ENSECRG00000004822 #22	ENSECRG00000004833 #22	AJUBA (ENSECRG00000004870) #27	mrpl52 (ENSECRG00000004906) #34	mmp14a (ENSECRG00000004914) #33	ENSECRG00000004931 #32	ENSECRG00000004953	ENSECRG00000004964	rabggta (ENSECRG00000004982)	tgm1l4 (ENSECRG00000005003)	dad1 (ENSECRG00000000408)	abhd4 (ENSECRG00000000420)	ENSECRG00000000432	ENSECRG00000000445	ENSECRG00000000464	ENSECRG00000000479
Reedfish	MODERN SPECIES	10	ENSECRG00000004304	ENSECRG00000004309	ENSECRG00000004432 #10	oxa1l (ENSECRG00000004677) #36	slc7a7 (ENSECRG00000004709) #35	ENSECRG00000004733	CCNB1IP1 (ENSECRG00000004739)	ENSECRG00000004742	ttc5 (ENSECRG00000004750)	mettl3 (ENSECRG00000004761)	mettl3 (ENSECRG00000004772)	ENSECRG00000004789	ENSECRG00000004800 #12	si:ch211-14a17.11 (ENSECRG00000004809) #21	ENSECRG00000004822 #22	ENSECRG00000004833 #22	AJUBA (ENSECRG00000004870) #27	mrpl52 (ENSECRG00000004906) #34	mmp14a (ENSECRG00000004914) #33	ENSECRG00000004931 #32	ENSECRG00000004953	ENSECRG00000004964	rabggta (ENSECRG00000004982)	tgm1l4 (ENSECRG00000005003)	dad1 (ENSECRG00000000408)	abhd4 (ENSECRG00000000420)	ENSECRG00000000432	ENSECRG00000000445	ENSECRG00000000464	ENSECRG00000000479	ENSECRG00000000491