Mus_A	ANCESTRAL SPECIES		ENSGT00390000000529	ENSGT00940000158379 #7	ENSGT00940000159607 #8	ENSGT00390000018038 #9	ENSGT00530000064123 #10	ENSGT00390000016800 #11	ENSGT00530000064194 #12	ENSGT00940000153294.m.a.c.a #13	ENSGT00390000004339 #14	ENSGT00390000006980 #15	ENSGT00950000182858.A.a.a #16	ENSGT01050000244868.a.a.a.a.a.b.h #17	ENSGT00390000006452.b.a #18	ENSGT00390000008726.h.a	ENSGT00940000160015 #21	ENSGT00940000157157.b #22	ENSGT00940000159324 #23	ENSGT00940000158199 #24	ENSGT00940000156724 #25	ENSGT00390000000560 #26	ENSGT00940000160404 #27	ENSGT00940000160570 #28	ENSGT00390000008220 #29	ENSGT00940000154667.a #30	ENSGT00530000065015 #32	ENSGT00940000159734 #33	ENSGT00940000160316 #34	ENSGT00560000078707	ENSGT00940000159244 #35	ENSGT00390000014658 #36	ENSGT00950000182975.a.a.b #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000000529	ENSGT00940000158379 #7	ENSGT00940000159607.e #8	ENSGT00390000018038 #9	ENSGT00530000064123 #10	ENSGT00390000016800 #11	ENSGT00530000064194 #12	ENSGT00940000153294.m.a.c.a #13	ENSGT00390000004339 #14	ENSGT00390000006980 #15	ENSGT00950000182858.A.a.a #16	ENSGT01050000244868.a.a.a.a.a.b.h #17	ENSGT00390000006452.b.a #18	ENSGT00390000008726.h.a	ENSGT00940000160015 #21	ENSGT00940000157157.b #22	ENSGT00940000159324 #23	ENSGT00940000158199 #24	ENSGT00940000156724 #25	ENSGT00390000000560 #26	ENSGT00940000160404 #27	ENSGT00940000160570 #28	ENSGT00390000008220 #29	ENSGT00940000154667.a #30	ENSGT00530000065015 #32	ENSGT00940000159734 #33	ENSGT00940000160316 #34	ENSGT00560000078707	ENSGT00940000159244 #35	ENSGT00390000014658 #36	ENSGT00950000182975.a.a.b #37
Mus_C	ANCESTRAL SPECIES		ENSGT00390000000529	ENSGT00940000158379 #7	ENSGT00940000159607.e #8	ENSGT00390000018038 #9	ENSGT00530000064123 #10	ENSGT00390000016800 #11	ENSGT00530000064194 #12	ENSGT00940000153294.m.a.c.a #13	ENSGT00390000004339 #14	ENSGT00390000006980 #15	ENSGT00950000182858.A.a.a #16	ENSGT01050000244868.a.a.a.a.a.b.h #17	ENSGT00390000006452.b.a #18	ENSGT00390000008726.h.a	ENSGT00940000160015 #21	ENSGT00940000157157.b #22	ENSGT00940000159324 #23	ENSGT00940000158199 #24	ENSGT00940000156724 #25	ENSGT00390000000560 #26	ENSGT00940000160404 #27	ENSGT00940000160570 #28	ENSGT00390000008220 #29	ENSGT00940000154667.a #30	ENSGT00530000065015 #32	ENSGT00940000159734 #33	ENSGT00940000160316 #34	ENSGT00560000078707	ENSGT00940000159244 #35	ENSGT00390000014658 #36	ENSGT00950000182975.a.a.b #37
spretus	MODERN SPECIES	11	Adamts13 (MGP_SPRETEiJ_G0024250) #7	MGP_SPRETEiJ_G0024249 #8	Stkld1 (MGP_SPRETEiJ_G0024248) #9	Surf4 (MGP_SPRETEiJ_G0024247) #10	Surf2 (MGP_SPRETEiJ_G0024246) #11	Surf1 (MGP_SPRETEiJ_G0024245) #12	Rpl7a (MGP_SPRETEiJ_G0024244) #13	Med22 (MGP_SPRETEiJ_G0024243) #14	Surf6 (MGP_SPRETEiJ_G0024242) #15	Abo (MGP_SPRETEiJ_G0024241) #16	Lcn4 (MGP_SPRETEiJ_G0024240) #17	Dipk1b (MGP_SPRETEiJ_G0024239) #18	MGP_SPRETEiJ_G0024238 #19	MGP_SPRETEiJ_G0024237 #20	Egfl7 (MGP_SPRETEiJ_G0024236) #21	Notch1 (MGP_SPRETEiJ_G0024235) #22	Sec16a (MGP_SPRETEiJ_G0024234) #23	Inpp5e (MGP_SPRETEiJ_G0024233) #24	Pmpca (MGP_SPRETEiJ_G0024232) #25	Entr1 (MGP_SPRETEiJ_G0024231) #26	Snapc4 (MGP_SPRETEiJ_G0024230) #27	Card9 (MGP_SPRETEiJ_G0024229) #28	Dnlz (MGP_SPRETEiJ_G0024228) #29	Gpsm1 (MGP_SPRETEiJ_G0024227) #30	MGP_SPRETEiJ_G0024226 #31	MGP_SPRETEiJ_G0024225 #32	Qsox2 (MGP_SPRETEiJ_G0024224) #33	Lhx3 (MGP_SPRETEiJ_G0024223) #34	Nacc2 (MGP_SPRETEiJ_G0024222) #35	Ubac1 (MGP_SPRETEiJ_G0024221) #36	Camsap1 (MGP_SPRETEiJ_G0024220) #37
Steppe mouse	MODERN SPECIES	2615										ENSMSIG00000028321	ENSMSIG00000028311	Lcn4 (ENSMSIG00000028306) #17	Dipk1b (ENSMSIG00000028280) #18	ENSMSIG00000028270	ENSMSIG00000028239 #21	Notch1 (ENSMSIG00000028222) #22	Sec16a (ENSMSIG00000028166) #23	Inpp5e (ENSMSIG00000028160) #24	Pmpca (ENSMSIG00000028147) #25	Entr1 (ENSMSIG00000028050) #26	Snapc4 (ENSMSIG00000028025) #27	Card9 (ENSMSIG00000028014) #28	Dnlz (ENSMSIG00000028011) #29	Gpsm1 (ENSMSIG00000027957) #30	Ccdc187 (ENSMSIG00000027882) #32	Qsox2 (ENSMSIG00000027872) #33	Lhx3 (ENSMSIG00000027861) #34	Tmem250-ps (ENSMSIG00000027859)	Nacc2 (ENSMSIG00000027849) #35	ENSMSIG00000027840 #36	ENSMSIG00000027836
Mouse	MODERN SPECIES	11	Cacfd1 (ENSMUSG00000015488)	Adamts13 (ENSMUSG00000014852) #7	Rexo4 (ENSMUSG00000052406) #8	Stkld1 (ENSMUSG00000049897) #9	Surf4 (ENSMUSG00000014867) #10	Surf2 (ENSMUSG00000014873) #11	Surf1 (ENSMUSG00000015790) #12	Rpl7a (ENSMUSG00000062647) #13	Med22 (ENSMUSG00000015776) #14	Surf6 (ENSMUSG00000036160) #15	Abo (ENSMUSG00000015787) #16	Lcn4 (ENSMUSG00000026919) #17	Dipk1b (ENSMUSG00000036186) #18	Agpat2 (ENSMUSG00000026922)	Egfl7 (ENSMUSG00000026921) #21	Notch1 (ENSMUSG00000026923) #22	Sec16a (ENSMUSG00000026924) #23	Inpp5e (ENSMUSG00000026925) #24	Pmpca (ENSMUSG00000026926) #25	Entr1 (ENSMUSG00000026927) #26	Snapc4 (ENSMUSG00000036281) #27	Card9 (ENSMUSG00000026928) #28	Dnlz (ENSMUSG00000075467) #29	Gpsm1 (ENSMUSG00000026930) #30	Ccdc187 (ENSMUSG00000048038) #32	Qsox2 (ENSMUSG00000036327) #33	Lhx3 (ENSMUSG00000026934) #34	Tmem250-ps (ENSMUSG00000087679)	Nacc2 (ENSMUSG00000026932) #35	Ubac1 (ENSMUSG00000036352) #36	Camsap1 (ENSMUSG00000026933) #37
Ryukyu mouse	MODERN SPECIES	11	Adamts13 (MGP_CAROLIEiJ_G0023333) #7	MGP_CAROLIEiJ_G0023332 #8	Stkld1 (MGP_CAROLIEiJ_G0023331) #9	Surf4 (MGP_CAROLIEiJ_G0023330) #10	Surf2 (MGP_CAROLIEiJ_G0023329) #11	Surf1 (MGP_CAROLIEiJ_G0023328) #12	Rpl7a (MGP_CAROLIEiJ_G0023327) #13	Med22 (MGP_CAROLIEiJ_G0023326) #14	Surf6 (MGP_CAROLIEiJ_G0023325) #15	Abo (MGP_CAROLIEiJ_G0023324) #16	Lcn4 (MGP_CAROLIEiJ_G0023323) #17	Dipk1b (MGP_CAROLIEiJ_G0023322) #18	Agpat2 (MGP_CAROLIEiJ_G0023321)	MGP_CAROLIEiJ_G0023320 #20	Egfl7 (MGP_CAROLIEiJ_G0023319) #21	Notch1 (MGP_CAROLIEiJ_G0023318) #22	Sec16a (MGP_CAROLIEiJ_G0023317) #23	Inpp5e (MGP_CAROLIEiJ_G0023316) #24	Pmpca (MGP_CAROLIEiJ_G0023315) #25	Entr1 (MGP_CAROLIEiJ_G0023314) #26	Snapc4 (MGP_CAROLIEiJ_G0023313) #27	Card9 (MGP_CAROLIEiJ_G0023312) #28	Dnlz (MGP_CAROLIEiJ_G0023311) #29	Gpsm1 (MGP_CAROLIEiJ_G0023310) #30	MGP_CAROLIEiJ_G0023309 #31	MGP_CAROLIEiJ_G0023308 #32	Qsox2 (MGP_CAROLIEiJ_G0023307) #33	Lhx3 (MGP_CAROLIEiJ_G0023306) #34	Nacc2 (MGP_CAROLIEiJ_G0023305) #35	Ubac1 (MGP_CAROLIEiJ_G0023304) #36	Camsap1 (MGP_CAROLIEiJ_G0023303) #37