Mus	ANCESTRAL SPECIES	1	ENSGT00390000000529	ENSGT00940000158379	ENSGT00940000159607	ENSGT00390000018038	ENSGT00530000064123	ENSGT00390000016800	ENSGT00530000064194	ENSGT00940000153294.m.a.c.a	ENSGT00390000004339	ENSGT00390000006980	ENSGT00950000182858.A.a.a	ENSGT01050000244868.a.a.a.a.a.b.h #18	ENSGT00390000006452.b.a #19	ENSGT00390000008726.h.a #20	ENSGT00940000160015 #21	ENSGT00940000157157.b #22	ENSGT00940000159324 #23	ENSGT00940000158199 #24	ENSGT00940000156724 #25	ENSGT00390000000560 #26	ENSGT00940000160404 #27	ENSGT00940000160570 #28	ENSGT00390000008220 #29	ENSGT00940000154667.a #30	ENSGT00530000065015 #31	ENSGT00940000159734 #32	ENSGT00940000160316 #33	ENSGT00560000078707 #34	ENSGT00940000159244 #35	ENSGT00390000014658 #36	ENSGT00950000182975.a.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00390000000529	ENSGT00940000158379	ENSGT00940000159607	ENSGT00390000018038	ENSGT00530000064123	ENSGT00390000016800	ENSGT00530000064194	ENSGT00940000153294.m.a.c.a	ENSGT00390000004339	ENSGT00390000006980	ENSGT00950000182858.A.a.a	ENSGT01050000244868.a.a.a.a.a.b.h #18	ENSGT00390000006452.b.a #19	ENSGT00390000008726.h.a #20	ENSGT00940000160015 #21	ENSGT00940000157157.b #22	ENSGT00940000159324 #23	ENSGT00940000158199 #24	ENSGT00940000156724 #25	ENSGT00390000000560 #26	ENSGT00940000160404 #27	ENSGT00940000160570 #28	ENSGT00390000008220 #29	ENSGT00940000154667.a #30	ENSGT00530000065015 #31	ENSGT00940000159734 #32	ENSGT00940000160316 #33	ENSGT00560000078707 #34	ENSGT00940000159244 #35	ENSGT00390000014658 #36	ENSGT00950000182975.a.a.b
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000000529	ENSGT00940000158379	ENSGT00940000159607.e	ENSGT00390000018038	ENSGT00530000064123	ENSGT00390000016800	ENSGT00530000064194	ENSGT00940000153294.m.a.c.a	ENSGT00390000004339	ENSGT00390000006980	ENSGT00950000182858.A.a.a	ENSGT01050000244868.a.a.a.a.a.b.h #18	ENSGT00390000006452.b.a #19	ENSGT00390000008726.h.a #20	ENSGT00940000160015 #21	ENSGT00940000157157.b #22	ENSGT00940000159324 #23	ENSGT00940000158199 #24	ENSGT00940000156724 #25	ENSGT00390000000560 #26	ENSGT00940000160404 #27	ENSGT00940000160570 #28	ENSGT00390000008220 #29	ENSGT00940000154667.a #30	ENSGT00530000065015 #31	ENSGT00940000159734 #32	ENSGT00940000160316 #33	ENSGT00560000078707 #34	ENSGT00940000159244 #35	ENSGT00390000014658 #36	ENSGT00950000182975.a.a.b
Mus_C	ANCESTRAL SPECIES		ENSGT00390000000529	ENSGT00940000158379	ENSGT00940000159607.e	ENSGT00390000018038	ENSGT00530000064123	ENSGT00390000016800	ENSGT00530000064194	ENSGT00940000153294.m.a.c.a	ENSGT00390000004339	ENSGT00390000006980	ENSGT00950000182858.A.a.a	ENSGT01050000244868.a.a.a.a.a.b.h #18	ENSGT00390000006452.b.a #19	ENSGT00390000008726.h.a #20	ENSGT00940000160015 #21	ENSGT00940000157157.b #22	ENSGT00940000159324 #23	ENSGT00940000158199 #24	ENSGT00940000156724 #25	ENSGT00390000000560 #26	ENSGT00940000160404 #27	ENSGT00940000160570 #28	ENSGT00390000008220 #29	ENSGT00940000154667.a #30	ENSGT00530000065015 #31	ENSGT00940000159734 #32	ENSGT00940000160316 #33	ENSGT00560000078707 #34	ENSGT00940000159244 #35	ENSGT00390000014658 #36	ENSGT00950000182975.a.a.b
Steppe mouse	MODERN SPECIES	2615										ENSMSIG00000028321 #16	ENSMSIG00000028311 #17	Lcn4 (ENSMSIG00000028306) #18	Dipk1b (ENSMSIG00000028280) #19	ENSMSIG00000028270 #20	ENSMSIG00000028239 #21	Notch1 (ENSMSIG00000028222) #22	Sec16a (ENSMSIG00000028166) #23	Inpp5e (ENSMSIG00000028160) #24	Pmpca (ENSMSIG00000028147) #25	Entr1 (ENSMSIG00000028050) #26	Snapc4 (ENSMSIG00000028025) #27	Card9 (ENSMSIG00000028014) #28	Dnlz (ENSMSIG00000028011) #29	Gpsm1 (ENSMSIG00000027957) #30	Ccdc187 (ENSMSIG00000027882) #31	Qsox2 (ENSMSIG00000027872) #32	Lhx3 (ENSMSIG00000027861) #33	Tmem250-ps (ENSMSIG00000027859) #34	Nacc2 (ENSMSIG00000027849) #35	ENSMSIG00000027840 #36	ENSMSIG00000027836 #37
spretus	MODERN SPECIES	11	Adamts13 (MGP_SPRETEiJ_G0024250)	MGP_SPRETEiJ_G0024249	Stkld1 (MGP_SPRETEiJ_G0024248)	Surf4 (MGP_SPRETEiJ_G0024247)	Surf2 (MGP_SPRETEiJ_G0024246)	Surf1 (MGP_SPRETEiJ_G0024245)	Rpl7a (MGP_SPRETEiJ_G0024244)	Med22 (MGP_SPRETEiJ_G0024243)	Surf6 (MGP_SPRETEiJ_G0024242)	Abo (MGP_SPRETEiJ_G0024241)	Lcn4 (MGP_SPRETEiJ_G0024240) #18	Dipk1b (MGP_SPRETEiJ_G0024239) #19	MGP_SPRETEiJ_G0024238	MGP_SPRETEiJ_G0024237	Egfl7 (MGP_SPRETEiJ_G0024236) #21	Notch1 (MGP_SPRETEiJ_G0024235) #22	Sec16a (MGP_SPRETEiJ_G0024234) #23	Inpp5e (MGP_SPRETEiJ_G0024233) #24	Pmpca (MGP_SPRETEiJ_G0024232) #25	Entr1 (MGP_SPRETEiJ_G0024231) #26	Snapc4 (MGP_SPRETEiJ_G0024230) #27	Card9 (MGP_SPRETEiJ_G0024229) #28	Dnlz (MGP_SPRETEiJ_G0024228) #29	Gpsm1 (MGP_SPRETEiJ_G0024227) #30	MGP_SPRETEiJ_G0024226	MGP_SPRETEiJ_G0024225 #31	Qsox2 (MGP_SPRETEiJ_G0024224) #32	Lhx3 (MGP_SPRETEiJ_G0024223) #33	Nacc2 (MGP_SPRETEiJ_G0024222) #35	Ubac1 (MGP_SPRETEiJ_G0024221) #36	Camsap1 (MGP_SPRETEiJ_G0024220)
Mouse	MODERN SPECIES	11	Cacfd1 (ENSMUSG00000015488)	Adamts13 (ENSMUSG00000014852)	Rexo4 (ENSMUSG00000052406)	Stkld1 (ENSMUSG00000049897)	Surf4 (ENSMUSG00000014867)	Surf2 (ENSMUSG00000014873)	Surf1 (ENSMUSG00000015790)	Rpl7a (ENSMUSG00000062647)	Med22 (ENSMUSG00000015776)	Surf6 (ENSMUSG00000036160)	Abo (ENSMUSG00000015787)	Lcn4 (ENSMUSG00000026919) #18	Dipk1b (ENSMUSG00000036186) #19	Agpat2 (ENSMUSG00000026922) #20	Egfl7 (ENSMUSG00000026921) #21	Notch1 (ENSMUSG00000026923) #22	Sec16a (ENSMUSG00000026924) #23	Inpp5e (ENSMUSG00000026925) #24	Pmpca (ENSMUSG00000026926) #25	Entr1 (ENSMUSG00000026927) #26	Snapc4 (ENSMUSG00000036281) #27	Card9 (ENSMUSG00000026928) #28	Dnlz (ENSMUSG00000075467) #29	Gpsm1 (ENSMUSG00000026930) #30	Ccdc187 (ENSMUSG00000048038) #31	Qsox2 (ENSMUSG00000036327) #32	Lhx3 (ENSMUSG00000026934) #33	Tmem250-ps (ENSMUSG00000087679) #34	Nacc2 (ENSMUSG00000026932) #35	Ubac1 (ENSMUSG00000036352) #36	Camsap1 (ENSMUSG00000026933)
Ryukyu mouse	MODERN SPECIES	11	Adamts13 (MGP_CAROLIEiJ_G0023333)	MGP_CAROLIEiJ_G0023332	Stkld1 (MGP_CAROLIEiJ_G0023331)	Surf4 (MGP_CAROLIEiJ_G0023330)	Surf2 (MGP_CAROLIEiJ_G0023329)	Surf1 (MGP_CAROLIEiJ_G0023328)	Rpl7a (MGP_CAROLIEiJ_G0023327)	Med22 (MGP_CAROLIEiJ_G0023326)	Surf6 (MGP_CAROLIEiJ_G0023325)	Abo (MGP_CAROLIEiJ_G0023324)	Lcn4 (MGP_CAROLIEiJ_G0023323) #18	Dipk1b (MGP_CAROLIEiJ_G0023322) #19	Agpat2 (MGP_CAROLIEiJ_G0023321) #20	MGP_CAROLIEiJ_G0023320	Egfl7 (MGP_CAROLIEiJ_G0023319) #21	Notch1 (MGP_CAROLIEiJ_G0023318) #22	Sec16a (MGP_CAROLIEiJ_G0023317) #23	Inpp5e (MGP_CAROLIEiJ_G0023316) #24	Pmpca (MGP_CAROLIEiJ_G0023315) #25	Entr1 (MGP_CAROLIEiJ_G0023314) #26	Snapc4 (MGP_CAROLIEiJ_G0023313) #27	Card9 (MGP_CAROLIEiJ_G0023312) #28	Dnlz (MGP_CAROLIEiJ_G0023311) #29	Gpsm1 (MGP_CAROLIEiJ_G0023310) #30	MGP_CAROLIEiJ_G0023309	MGP_CAROLIEiJ_G0023308 #31	Qsox2 (MGP_CAROLIEiJ_G0023307) #32	Lhx3 (MGP_CAROLIEiJ_G0023306) #33	Nacc2 (MGP_CAROLIEiJ_G0023305) #35	Ubac1 (MGP_CAROLIEiJ_G0023304) #36	Camsap1 (MGP_CAROLIEiJ_G0023303)
Shrew mouse	MODERN SPECIES	16	Adamts13 (MGP_PahariEiJ_G0024790)	Rexo4 (MGP_PahariEiJ_G0024789)	Stkld1 (MGP_PahariEiJ_G0024788)	Surf4 (MGP_PahariEiJ_G0024787)	Surf2 (MGP_PahariEiJ_G0024786)	Surf1 (MGP_PahariEiJ_G0024785)	MGP_PahariEiJ_G0024784	Med22 (MGP_PahariEiJ_G0024783)	Surf6 (MGP_PahariEiJ_G0024782)	Abo (MGP_PahariEiJ_G0024781)	Lcn4 (MGP_PahariEiJ_G0024780) #18	Dipk1b (MGP_PahariEiJ_G0024779) #19	Agpat2 (MGP_PahariEiJ_G0024778) #20	MGP_PahariEiJ_G0024777	Egfl7 (MGP_PahariEiJ_G0024776) #21	Notch1 (MGP_PahariEiJ_G0024775) #22	Sec16a (MGP_PahariEiJ_G0024774) #23	Inpp5e (MGP_PahariEiJ_G0024773) #24	Pmpca (MGP_PahariEiJ_G0024772) #25	Entr1 (MGP_PahariEiJ_G0024771) #26	Snapc4 (MGP_PahariEiJ_G0024770) #27	Card9 (MGP_PahariEiJ_G0024769) #28	Dnlz (MGP_PahariEiJ_G0024768) #29	Gpsm1 (MGP_PahariEiJ_G0024767) #30	MGP_PahariEiJ_G0024766	MGP_PahariEiJ_G0024765 #31	MGP_PahariEiJ_G0024764 #32	Lhx3 (MGP_PahariEiJ_G0024763) #33	Nacc2 (MGP_PahariEiJ_G0024762) #35	Ubac1 (MGP_PahariEiJ_G0024761) #36	Camsap1 (MGP_PahariEiJ_G0024760)