Glires	ANCESTRAL SPECIES	16	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT01010000224541	ENSGT00940000162108.tb #26	ENSGT00940000165716	ENSGT00940000154525.b.a #27	ENSGT00940000171163	ENSGT00940000164044	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00390000005511 #24	ENSGT00950000183145.E #25	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a	ENSGT00940000156414
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00390000005511 #24	ENSGT00950000183145.E #25	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a	ENSGT00940000156414
Eurasian red squirrel	MODERN SPECIES	13	BAG3 (ENSSVLG00005002726) #7	INPP5F (ENSSVLG00005002590) #8	MCMBP (ENSSVLG00005002533) #9	SEC23IP (ENSSVLG00005002496) #10	PLPP4 (ENSSVLG00005002461) #11	WDR11 (ENSSVLG00005002429) #12	FGFR2 (ENSSVLG00005002254) #13	ENSSVLG00005002095 #14	ATE1 (ENSSVLG00005002012) #15	ENSSVLG00005001969 #16	ENSSVLG00005001936 #17	ENSSVLG00005001901 #18	ENSSVLG00005001566 #19	BTBD16 (ENSSVLG00005001375) #20	ENSSVLG00005001346 #21	PLEKHA1 (ENSSVLG00005001323) #22	HTRA1 (ENSSVLG00005001280) #23	ENSSVLG00005001252 #24	ENSSVLG00005001198 #25	ENSSVLG00005001120 #26	CUZD1 (ENSSVLG00005001077) #27	ENSSVLG00005001055 #28	ENSSVLG00005001041 #29	ENSSVLG00005001016 #30	PSTK (ENSSVLG00005000980) #31	IKZF5 (ENSSVLG00005000956) #32	ACADSB (ENSSVLG00005000924) #33	HMX3 (ENSSVLG00005000902) #34	HMX2 (ENSSVLG00005000888) #35	BUB3 (ENSSVLG00005000858) #36	ENSSVLG00005000813 #37
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157.k #22	ENSGT00940000156955 #23	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a.m.a #36	ENSGT00950000183001.a.a	ENSGT00940000156414	ENSGT00390000004719
Marmotini_b	ANCESTRAL SPECIES	27	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157.k #22	ENSGT00940000156955 #23	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a.m.a #36	ENSGT00950000183001.a.a	ENSGT00940000156414	ENSGT00390000004719
Arctic ground squirrel	MODERN SPECIES	28	TIAL1 (ENSUPAG00010006642)	BAG3 (ENSUPAG00010006628) #7	INPP5F (ENSUPAG00010006608) #8	MCMBP (ENSUPAG00010006578) #9	SEC23IP (ENSUPAG00010006554) #10	ENSUPAG00010006552	PLPP4 (ENSUPAG00010006532) #11	WDR11 (ENSUPAG00010006463) #12	FGFR2 (ENSUPAG00010006384) #13	ATE1 (ENSUPAG00010006266) #15	ENSUPAG00010006255 #16	NSMCE4A (ENSUPAG00010006240) #17	TACC2 (ENSUPAG00010005112) #18	BTBD16 (ENSUPAG00010004978) #20	ENSUPAG00010004971	ENSUPAG00010004924 #22	HTRA1 (ENSUPAG00010004911) #23	ENSUPAG00010004901 #24	ENSUPAG00010004894	ENSUPAG00010004857 #25	CUZD1 (ENSUPAG00010004852) #27	ENSUPAG00010004845	ENSUPAG00010004823 #28	PSTK (ENSUPAG00010004819) #31	IKZF5 (ENSUPAG00010004809) #32	ACADSB (ENSUPAG00010004778) #33	HMX3 (ENSUPAG00010004771) #34	HMX2 (ENSUPAG00010004763) #35	BUB3 (ENSUPAG00010004752) #36	GPR26 (ENSUPAG00010004746)	CPXM2 (ENSUPAG00010004732)
Squirrel	MODERN SPECIES	86	GRK5 (ENSSTOG00000002553)	RGS10 (ENSSTOG00000004925)	TIAL1 (ENSSTOG00000025095)	BAG3 (ENSSTOG00000023267) #7	ENSSTOG00000032848	INPP5F (ENSSTOG00000005115) #8	MCMBP (ENSSTOG00000005145) #9	SEC23IP (ENSSTOG00000005178) #10	PLPP4 (ENSSTOG00000006962) #11	WDR11 (ENSSTOG00000006935) #12	FGFR2 (ENSSTOG00000003979) #13	ATE1 (ENSSTOG00000027779) #15	NSMCE4A (ENSSTOG00000011112) #17	ENSSTOG00000022252 #18	BTBD16 (ENSSTOG00000015270) #20	ENSSTOG00000010191 #22	HTRA1 (ENSSTOG00000026475) #23	ENSSTOG00000034031	ENSSTOG00000026812 #26	CUZD1 (ENSSTOG00000008183) #27	ENSSTOG00000030864	ENSSTOG00000033040 #28	PSTK (ENSSTOG00000006955) #31	IKZF5 (ENSSTOG00000028669) #32	ACADSB (ENSSTOG00000006965) #33	HMX3 (ENSSTOG00000003981) #34	HMX2 (ENSSTOG00000000994) #35	ENSSTOG00000021785 #36	GPR26 (ENSSTOG00000026881)	CPXM2 (ENSSTOG00000020281)	CHST15 (ENSSTOG00000020654)
Alpin marmot	MODERN SPECIES	53	TIAL1 (ENSMMMG00000000560)	BAG3 (ENSMMMG00000000616) #7	INPP5F (ENSMMMG00000000681) #8	MCMBP (ENSMMMG00000000744) #9	SEC23IP (ENSMMMG00000000778) #10	PLPP4 (ENSMMMG00000000832) #11	ENSMMMG00000000883	ENSMMMG00000000896	WDR11 (ENSMMMG00000000912) #12	FGFR2 (ENSMMMG00000000986) #13	ATE1 (ENSMMMG00000001092) #15	NSMCE4A (ENSMMMG00000001206) #17	ENSMMMG00000001271 #18	ENSMMMG00000001553 #18	BTBD16 (ENSMMMG00000001579) #20	ENSMMMG00000001679 #22	ENSMMMG00000001757	ENSMMMG00000001770 #23	ENSMMMG00000001790 ##25	C10orf120 (ENSMMMG00000001925) #24	ENSMMMG00000001938 #26	ENSMMMG00000001979 #26	CUZD1 (ENSMMMG00000001993) #27	PSTK (ENSMMMG00000002014) #31	IKZF5 (ENSMMMG00000002033) #32	ACADSB (ENSMMMG00000002052) #33	HMX2 (ENSMMMG00000002076) #35	ENSMMMG00000002090 #36	GPR26 (ENSMMMG00000002142)	CPXM2 (ENSMMMG00000002158)	CHST15 (ENSMMMG00000002233)
Marmotini	ANCESTRAL SPECIES	29										ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00940000155157.l #22	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647
Marmotini_b	ANCESTRAL SPECIES	240											ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00940000155157.l #22	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b	ENSGT00390000011709
Squirrel	MODERN SPECIES	267											OLFM4 (ENSSTOG00000019753)	PCDH8 (ENSSTOG00000022966)	CNMD (ENSSTOG00000004192)	SUGT1 (ENSSTOG00000004159)	ELF1 (ENSSTOG00000007700)	ENSSTOG00000006234 #22	WBP4 (ENSSTOG00000024976)	KBTBD7 (ENSSTOG00000029195)	MTRF1 (ENSSTOG00000021682)	NAA16 (ENSSTOG00000002798)	RGCC (ENSSTOG00000025358)
Arctic ground squirrel	MODERN SPECIES	216											OLFM4 (ENSUPAG00010022208)	PCDH8 (ENSUPAG00010022211)	CNMD (ENSUPAG00010022215)	SUGT1 (ENSUPAG00010022218)	ELF1 (ENSUPAG00010022223)	ENSUPAG00010022225 #22	WBP4 (ENSUPAG00010022226)	KBTBD7 (ENSUPAG00010022229)	MTRF1 (ENSUPAG00010022231)	NAA16 (ENSUPAG00010022237)	RGCC (ENSUPAG00010022251)
Alpin marmot	MODERN SPECIES	13										OLFM4 (ENSMMMG00000000484)	PCDH8 (ENSMMMG00000000439)	CNMD (ENSMMMG00000000405)	SUGT1 (ENSMMMG00000000341)	ENSMMMG00000000315	ELF1 (ENSMMMG00000000224)	ENSMMMG00000000196 #22	WBP4 (ENSMMMG00000000179)	KBTBD7 (ENSMMMG00000000126)	MTRF1 (ENSMMMG00000000091)	NAA16 (ENSMMMG00000000060)	RGCC (ENSMMMG00000023619)	VWA8 (ENSMMMG00000023535)	DGKH (ENSMMMG00000023481)	AKAP11 (ENSMMMG00000023475)	TNFSF11 (ENSMMMG00000023474)	ENSMMMG00000023473	EPSTI1 (ENSMMMG00000023471)	ENOX1 (ENSMMMG00000023468)	ENSMMMG00000023467	CCDC122 (ENSMMMG00000023465)	LACC1 (ENSMMMG00000023463)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000154962.B	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a.o #36	ENSGT00950000183001.a.a	ENSGT00940000156414	ENSGT00390000004719
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	4	SEC23IP (ENSHGLG00000013752) #10	ENSHGLG00000045415	PLPP4 (ENSHGLG00000012927) #11	ENSHGLG00000044013	WDR11 (ENSHGLG00000010871) #12	ENSHGLG00000011201 #13	ENSHGLG00000032507	ENSHGLG00000006514	ENSHGLG00000045128	ENSHGLG00000018201 #15	NSMCE4A (ENSHGLG00000013057) #17	ENSHGLG00000035516 #18	ENSHGLG00000014774 #18	BTBD16 (ENSHGLG00000010643) #20	ENSHGLG00000043818	ENSHGLG00000009809 #22	HTRA1 (ENSHGLG00000011897) #23	ENSHGLG00000014651 #25	ENSHGLG00000045576	ENSHGLG00000041620 #26	ENSHGLG00000014383	ENSHGLG00000047493	ENSHGLG00000011520	ENSHGLG00000044519	ENSHGLG00000039988	ENSHGLG00000033348	ENSHGLG00000014509	TM9SF3 (ENSHGLG00000012450)	TLL2 (ENSHGLG00000013626)	OPALIN (ENSHGLG00000042100)	DNTT (ENSHGLG00000009905)
Naked mole-rat female	MODERN SPECIES	21	SEMA6B (ENSHGLG00000008078)	LRG1 (ENSHGLG00000008746)	PLIN5 (ENSHGLG00000009083)	PLIN4 (ENSHGLG00000035695)	HDGFL2 (ENSHGLG00000010821)	UBXN6 (ENSHGLG00000011971)	ENSHGLG00000035324	CHAF1A (ENSHGLG00000005439)	SH3GL1 (ENSHGLG00000005623)	MPND (ENSHGLG00000006669)	STAP2 (ENSHGLG00000008727)	FSD1 (ENSHGLG00000006238)	TMIGD2 (ENSHGLG00000036449)	SHD (ENSHGLG00000007108)	YJU2 (ENSHGLG00000008096)	ENSHGLG00000005526 #22	ANKRD24 (ENSHGLG00000010865)	SIRT6 (ENSHGLG00000006696)	CREB3L3 (ENSHGLG00000050546)	MAP2K2 (ENSHGLG00000009089)	ZBTB7A (ENSHGLG00000011811)	PIAS4 (ENSHGLG00000006172)	ENSHGLG00000007881	DAPK3 (ENSHGLG00000009769)	ENSHGLG00000015025	GADD45B (ENSHGLG00000044805)	GNG7 (ENSHGLG00000017287)	DIRAS1 (ENSHGLG00000013381)	SLC39A3 (ENSHGLG00000033652)	SGTA (ENSHGLG00000018547)	ENSHGLG00000040783
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000154962.B	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035.e.a #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a.o #36	ENSGT00950000183001.a.a	ENSGT00940000156414	ENSGT00390000004719
Guinea pig	MODERN SPECIES	1	PRDX3 (ENSCPOG00000039588)	GRK5 (ENSCPOG00000007453)	RGS10 (ENSCPOG00000004325)	ENSCPOG00000006074	BAG3 (ENSCPOG00000007549) #7	INPP5F (ENSCPOG00000009019) #8	MCMBP (ENSCPOG00000009028) #9	SEC23IP (ENSCPOG00000004752) #10	PLPP4 (ENSCPOG00000012587) #11	WDR11 (ENSCPOG00000014291) #12	FGFR2 (ENSCPOG00000008833) #13	ATE1 (ENSCPOG00000025966) #15	NSMCE4A (ENSCPOG00000000625) #17	ENSCPOG00000000626 #18	BTBD16 (ENSCPOG00000000630) #20	PLEKHA1 (ENSCPOG00000000631) #22	HTRA1 (ENSCPOG00000000632) #23	ENSCPOG00000001267 #26	CUZD1 (ENSCPOG00000003649) #27	C10orf88 (ENSCPOG00000006675) #28	PSTK (ENSCPOG00000030265) #31	ENSCPOG00000037527 #32	ACADSB (ENSCPOG00000012372) #33	HMX3 (ENSCPOG00000011950) #34	HMX2 (ENSCPOG00000032283) #35	BUB3 (ENSCPOG00000011957) #36	GPR26 (ENSCPOG00000037735)	CPXM2 (ENSCPOG00000009383)	CHST15 (ENSCPOG00000038052)	OAT (ENSCPOG00000010340)	LHPP (ENSCPOG00000005337)
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000153430.a.b	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035.e.a #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a.o #36	ENSGT00950000183001.a.a	ENSGT00940000156414	ENSGT00390000004719
Long-tailed chinchilla	MODERN SPECIES	184												ATE1 (ENSCLAG00000002097) #15	NSMCE4A (ENSCLAG00000002459) #17	TACC2 (ENSCLAG00000002687) #18	BTBD16 (ENSCLAG00000005827) #20	PLEKHA1 (ENSCLAG00000006674) #22	HTRA1 (ENSCLAG00000002509) #23	ENSCLAG00000002836 #26	CUZD1 (ENSCLAG00000003061) #27	ENSCLAG00000002221	ENSCLAG00000002572	C10orf88 (ENSCLAG00000002628) #28	PSTK (ENSCLAG00000002960) #31	ENSCLAG00000002888 #32	ACADSB (ENSCLAG00000003369) #33	HMX3 (ENSCLAG00000004802) #34	HMX2 (ENSCLAG00000005166) #35	BUB3 (ENSCLAG00000005834) #36	GPR26 (ENSCLAG00000001930)	CPXM2 (ENSCLAG00000001957)	CHST15 (ENSCLAG00000002182)
Degu	DUPLICATION
Degu	MODERN SPECIES	51	ENSODEG00000020513	ENSODEG00000017620	ENSODEG00000017622	PLPP4 (ENSODEG00000017787) #11	ENSODEG00000017528	WDR11 (ENSODEG00000017999) #12	ENSODEG00000017729	ENSODEG00000017521	FGFR2 (ENSODEG00000017727) #13	ENSODEG00000017613	ATE1 (ENSODEG00000017714) #15	NSMCE4A (ENSODEG00000017586) #17	ENSODEG00000017758 #18	BTBD16 (ENSODEG00000017181) #20	ENSODEG00000017646	ENSODEG00000017854 #22	HTRA1 (ENSODEG00000017523) #23	ENSODEG00000017538 #25	ENSODEG00000017508	ENSODEG00000017380 #26	CUZD1 (ENSODEG00000017550) #27	C10orf88 (ENSODEG00000017572) #28	PSTK (ENSODEG00000017417) #31	ENSODEG00000017599 #32	ACADSB (ENSODEG00000017347) #33	HMX3 (ENSODEG00000017303) #34	HMX2 (ENSODEG00000017125) #35	ENSODEG00000017376 #36	ENSODEG00000020472	GPR26 (ENSODEG00000017488)	CPXM2 (ENSODEG00000017290)
Degu	MODERN SPECIES	122											ENSODEG00000006114	ZPLD1 (ENSODEG00000007525)	ENSODEG00000007067	ENSODEG00000005667	NFKBIZ (ENSODEG00000005703)	ENSODEG00000005326 #22	ENSODEG00000007096	NXPE3 (ENSODEG00000006809)	ENSODEG00000006503	ENSODEG00000005842	ZBTB11 (ENSODEG00000006262)	ENSODEG00000019290	ENSODEG00000005207	SENP7 (ENSODEG00000006738)	ENSODEG00000005550	IMPG2 (ENSODEG00000006079)	ABI3BP (ENSODEG00000005855)	ENSODEG00000005535	ADGRG7 (ENSODEG00000005676)	TMEM45A (ENSODEG00000005098)	ENSODEG00000006299
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Kangaroo rat	MODERN SPECIES	377	Grk5 (ENSDORG00000008496)	Rgs10 (ENSDORG00000003521)	Tial1 (ENSDORG00000010683)	Bag3 (ENSDORG00000011527) #7	Inpp5f (ENSDORG00000003458) #8	Mcmbp (ENSDORG00000008011) #9	ENSDORG00000027445 #10	ENSDORG00000008015 #10	Plpp4 (ENSDORG00000002515) #11	Wdr11 (ENSDORG00000003077) #12	Fgfr2 (ENSDORG00000005639) #13	Ate1 (ENSDORG00000011669) #15	Nsmce4a (ENSDORG00000003880) #17	ENSDORG00000003881 #18	Btbd16 (ENSDORG00000005110) #20	Plekha1 (ENSDORG00000024017) #22	Htra1 (ENSDORG00000015731) #23	ENSDORG00000007072 #26	Cuzd1 (ENSDORG00000007077) #27	Fam24a (ENSDORG00000010469)	2310057M21Rik (ENSDORG00000028211) #28	Pstk (ENSDORG00000011804) #31	Ikzf5 (ENSDORG00000030138) #32	Acadsb (ENSDORG00000001496) #33	Hmx3 (ENSDORG00000002862) #34	Hmx2 (ENSDORG00000028020) #35	Bub3 (ENSDORG00000002864) #36	Gpr26 (ENSDORG00000013184)	Cpxm2 (ENSDORG00000013185)	Chst15 (ENSDORG00000025969)	Oat (ENSDORG00000013083)
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.b #10	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Lesser Egyptian jerboa	MODERN SPECIES	70	ENSJJAG00000005398	Bag3 (ENSJJAG00000013499) #7	ENSJJAG00000010122	ENSJJAG00000016414	Inpp5f (ENSJJAG00000020126) #8	Mcmbp (ENSJJAG00000022939) #9	ENSJJAG00000021258 #10	ENSJJAG00000014744 #10	Plpp4 (ENSJJAG00000022845) #11	Wdr11 (ENSJJAG00000014160) #12	Fgfr2 (ENSJJAG00000012859) #13	Ate1 (ENSJJAG00000013127) #15	Nsmce4a (ENSJJAG00000020152) #17	ENSJJAG00000015501 #18	Btbd16 (ENSJJAG00000012283) #20	Plekha1 (ENSJJAG00000019344) #22	Htra1 (ENSJJAG00000012131) #23	4933402N03Rik (ENSJJAG00000001575) #24	ENSJJAG00000011591 #26	Cuzd1 (ENSJJAG00000022053) #27	ENSJJAG00000018148	Fam24a (ENSJJAG00000011583)	2310057M21Rik (ENSJJAG00000022848) #28	Pstk (ENSJJAG00000021183) #31	Ikzf5 (ENSJJAG00000000850) #32	ENSJJAG00000017926 #33	Hmx3 (ENSJJAG00000017208) #34	Hmx2 (ENSJJAG00000021150) #35	ENSJJAG00000019122 #36	Gpr26 (ENSJJAG00000024093)	Cpxm2 (ENSJJAG00000024326)
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.b #10	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	556	Grk5 (ENSNGAG00000022629)	Rgs10 (ENSNGAG00000022036)	Tial1 (ENSNGAG00000020427)	Bag3 (ENSNGAG00000018737) #7	Inpp5f (ENSNGAG00000016489) #8	Mcmbp (ENSNGAG00000001050) #9	ENSNGAG00000022868 #10	ENSNGAG00000022208 #10	Plpp4 (ENSNGAG00000018055) #11	Wdr11 (ENSNGAG00000001781) #12	Fgfr2 (ENSNGAG00000017837) #13	Ate1 (ENSNGAG00000011904) #15	Nsmce4a (ENSNGAG00000009717) #17	ENSNGAG00000012564 #18	Btbd16 (ENSNGAG00000019177) #20	Plekha1 (ENSNGAG00000016064) #22	Htra1 (ENSNGAG00000014707) #23	4933402N03Rik (ENSNGAG00000013572) #24	ENSNGAG00000009762 #26	Cuzd1 (ENSNGAG00000005205) #27	ENSNGAG00000001948	ENSNGAG00000000938	2310057M21Rik (ENSNGAG00000020488) #28	Pstk (ENSNGAG00000018855) #31	Ikzf5 (ENSNGAG00000014976) #32	Acadsb (ENSNGAG00000003415) #33	Hmx3 (ENSNGAG00000000752) #34	Hmx2 (ENSNGAG00000018683) #35	Bub3 (ENSNGAG00000013186) #36	Gpr26 (ENSNGAG00000012118)	Cpxm2 (ENSNGAG00000020180)
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.b #10	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.b #10	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000171163	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.a #10	ENSGT00940000156602.g.b #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a	ENSGT00940000156414
Northern American deer mouse	MODERN SPECIES		Tial1 (ENSPEMG00000014538)	Bag3 (ENSPEMG00000016897) #7	Inpp5f (ENSPEMG00000023406) #8	Mcmbp (ENSPEMG00000021598) #9	Sec23ip (ENSPEMG00000022060) #10	ENSPEMG00000025267	Plpp4 (ENSPEMG00000022713) #11	Wdr11 (ENSPEMG00000022330) #12	Fgfr2 (ENSPEMG00000014436) #13	Ate1 (ENSPEMG00000022740) #15	ENSPEMG00000025302 #16	Nsmce4a (ENSPEMG00000021690) #17	ENSPEMG00000009363 #18	ENSPEMG00000030243 #18	Btbd16 (ENSPEMG00000021258) #20	Plekha1 (ENSPEMG00000021169) #22	Htra1 (ENSPEMG00000022401) #23	ENSPEMG00000028257 #25	ENSPEMG00000024600 #25	4933402N03Rik (ENSPEMG00000021538) #24	Cdcp3 (ENSPEMG00000020751) #26	Cuzd1 (ENSPEMG00000022588) #27	Fam24a (ENSPEMG00000031419)	2310057M21Rik (ENSPEMG00000020879) #28	Pstk (ENSPEMG00000020718) #31	Ikzf5 (ENSPEMG00000025067) #32	Acadsb (ENSPEMG00000023029) #33	Hmx3 (ENSPEMG00000020746) #34	Hmx2 (ENSPEMG00000020567) #35	Bub3 (ENSPEMG00000022008) #36	Gpr26 (ENSPEMG00000021661)
Prairie vole	MODERN SPECIES	16	Rusf1 (ENSMOCG00000021936)	Rgs10 (ENSMOCG00000011142)	Tial1 (ENSMOCG00000014244)	Bag3 (ENSMOCG00000018609) #7	Inpp5f (ENSMOCG00000015647) #8	Mcmbp (ENSMOCG00000019379) #9	ENSMOCG00000019551 #10	ENSMOCG00000011869 #10	Plpp4 (ENSMOCG00000012214) #11	Wdr11 (ENSMOCG00000017742) #12	Fgfr2 (ENSMOCG00000017948) #13	Ate1 (ENSMOCG00000006090) #15	Nsmce4a (ENSMOCG00000010931) #17	ENSMOCG00000005035 #18	Btbd16 (ENSMOCG00000019789) #20	Plekha1 (ENSMOCG00000017137) #22	Htra1 (ENSMOCG00000022155) #23	4933402N03Rik (ENSMOCG00000021499) #24	ENSMOCG00000002270 #26	ENSMOCG00000015698	Cuzd1 (ENSMOCG00000019620) #27	2310057M21Rik (ENSMOCG00000017003) #28	Pstk (ENSMOCG00000020657) #31	Ikzf5 (ENSMOCG00000012731) #32	Acadsb (ENSMOCG00000014741) #33	Hmx3 (ENSMOCG00000017634) #34	Hmx2 (ENSMOCG00000019525) #35	Bub3 (ENSMOCG00000022149) #36	Gpr26 (ENSMOCG00000010123)	Cpxm2 (ENSMOCG00000016240)	Chst15 (ENSMOCG00000000598)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00390000000050	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.b #10	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000171163	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a	ENSGT00940000156414
Chinese hamster chok1gshd	MODERN SPECIES	401	Slc5a2 (ENSCGRG00001017676)	Rusf1 (ENSCGRG00001021809)	Rgs10 (ENSCGRG00001023110)	Tial1 (ENSCGRG00001012762)	Bag3 (ENSCGRG00001013021) #7	Inpp5f (ENSCGRG00001018515) #8	Mcmbp (ENSCGRG00001008541) #9	Sec23ip (ENSCGRG00001017822) #10	Plpp4 (ENSCGRG00001022754) #11	Wdr11 (ENSCGRG00001014792) #12	Fgfr2 (ENSCGRG00001015969) #13	Ate1 (ENSCGRG00001015040) #15	Nsmce4a (ENSCGRG00001024552) #17	ENSCGRG00001021443 #18	Btbd16 (ENSCGRG00001003604) #20	Plekha1 (ENSCGRG00001014871) #22	Htra1 (ENSCGRG00001020772) #23	4933402N03Rik (ENSCGRG00001021980) #24	ENSCGRG00001005841 #26	Cuzd1 (ENSCGRG00001016877) #27	ENSCGRG00001021611	ENSCGRG00001010191	2310057M21Rik (ENSCGRG00001022004) #28	Pstk (ENSCGRG00001019704) #31	Ikzf5 (ENSCGRG00001000240) #32	Acadsb (ENSCGRG00001013507) #33	Hmx3 (ENSCGRG00001013357) #34	Hmx2 (ENSCGRG00001013576) #35	Bub3 (ENSCGRG00001014854) #36	ENSCGRG00001022673	Gpr26 (ENSCGRG00001000638)
Golden Hamster	MODERN SPECIES	617	Rusf1 (ENSMAUG00000007110)	Rgs10 (ENSMAUG00000011265)	ENSMAUG00000008932	Bag3 (ENSMAUG00000010387) #7	Inpp5f (ENSMAUG00000010345) #8	ENSMAUG00000010608 #9	ENSMAUG00000005483 #10	ENSMAUG00000006177 #10	Plpp4 (ENSMAUG00000006636) #11	Wdr11 (ENSMAUG00000008685) #12	Fgfr2 (ENSMAUG00000012248) #13	Ate1 (ENSMAUG00000007472) #15	Nsmce4a (ENSMAUG00000004938) #17	ENSMAUG00000005429 #18	Btbd16 (ENSMAUG00000006732) #20	Plekha1 (ENSMAUG00000008559) #22	Htra1 (ENSMAUG00000006347) #23	4933402N03Rik (ENSMAUG00000004597) #24	ENSMAUG00000009283 #26	Cuzd1 (ENSMAUG00000005301) #27	2310057M21Rik (ENSMAUG00000006383) #28	Pstk (ENSMAUG00000004534) #31	Ikzf5 (ENSMAUG00000004882) #32	Acadsb (ENSMAUG00000005091) #33	Hmx3 (ENSMAUG00000004458) #34	Hmx2 (ENSMAUG00000006087) #35	Gpr26 (ENSMAUG00000004635)	Cpxm2 (ENSMAUG00000009447)	Chst15 (ENSMAUG00000008576)	ENSMAUG00000004967	Oat (ENSMAUG00000006454)
Murinae	ANCESTRAL SPECIES		ENSGT00390000003648	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000016534.B #16	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Rat	MODERN SPECIES		Rps2-ps13 (ENSRNOG00000069056)	Bag3 (ENSRNOG00000020298) #7	Inpp5f (ENSRNOG00000020388) #8	Mcmbp (ENSRNOG00000020394) #9	Sec23ip (ENSRNOG00000020411) #10	Plpp4 (ENSRNOG00000020424) #11	ENSRNOG00000066085	Wdr11 (ENSRNOG00000020430) #12	LOC102555739 (ENSRNOG00000020446)	Fgfr2 (ENSRNOG00000016374) #13	Ate1 (ENSRNOG00000024414) #15	RGD1563285 (ENSRNOG00000069173) #16	Nsmce4a (ENSRNOG00000020452) #17	Tacc2 (ENSRNOG00000020457) #18	Btbd16 (ENSRNOG00000036675) #20	Plekha1 (ENSRNOG00000020497) #22	Htra1 (ENSRNOG00000020533) #23	Dmbt1 (ENSRNOG00000020560) #25	LOC100911413 (ENSRNOG00000034038) #25	C1h10orf120 (ENSRNOG00000022900) #24	Dmbt1l1 (ENSRNOG00000022737) #26	Cuzd1 (ENSRNOG00000029945) #27	RGD1559891 (ENSRNOG00000026440)	Fam24b (ENSRNOG00000026419)	C1h10orf88 (ENSRNOG00000020597) #28	Pstk (ENSRNOG00000020605) #31	Ikzf5 (ENSRNOG00000025651) #32	Acadsb (ENSRNOG00000020624) #33	Hmx3 (ENSRNOG00000020637) #34	Hmx2 (ENSRNOG00000020638) #35	Bub3 (ENSRNOG00000020643) #36
Mus	ANCESTRAL SPECIES		ENSGT00390000000050	ENSGT00390000003648	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Shrew mouse	MODERN SPECIES		Slc5a2 (MGP_PahariEiJ_G0013752)	Rusf1 (MGP_PahariEiJ_G0013753)	Rgs10 (MGP_PahariEiJ_G0013754)	Tial1 (MGP_PahariEiJ_G0013755)	Bag3 (MGP_PahariEiJ_G0013756) #7	Inpp5f (MGP_PahariEiJ_G0013757) #8	Mcmbp (MGP_PahariEiJ_G0013758) #9	Sec23ip (MGP_PahariEiJ_G0013759) #10	MGP_PahariEiJ_G0013760 #11	Wdr11 (MGP_PahariEiJ_G0013761) #12	Fgfr2 (MGP_PahariEiJ_G0013762) #13	Ate1 (MGP_PahariEiJ_G0013763) #15	Nsmce4a (MGP_PahariEiJ_G0013764) #17	Tacc2 (MGP_PahariEiJ_G0013765) #18	Btbd16 (MGP_PahariEiJ_G0013766) #20	Plekha1 (MGP_PahariEiJ_G0013767) #22	Htra1 (MGP_PahariEiJ_G0013768) #23	4933402N03Rik (MGP_PahariEiJ_G0013769) #24	MGP_PahariEiJ_G0013770 #26	Cuzd1 (MGP_PahariEiJ_G0013771) #27	Fam24b (MGP_PahariEiJ_G0013772)	Fam24a (MGP_PahariEiJ_G0013773)	2310057M21Rik (MGP_PahariEiJ_G0013774) #28	Pstk (MGP_PahariEiJ_G0013775) #31	Ikzf5 (MGP_PahariEiJ_G0013776) #32	Acadsb (MGP_PahariEiJ_G0013777) #33	Hmx3 (MGP_PahariEiJ_G0013778) #34	Hmx2 (MGP_PahariEiJ_G0013779) #35	Bub3 (MGP_PahariEiJ_G0013780) #36	Gpr26 (MGP_PahariEiJ_G0013781)	Cpxm2 (MGP_PahariEiJ_G0013782)
Mus_A	ANCESTRAL SPECIES	1	ENSGT00390000000050	ENSGT00390000003648	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Ryukyu mouse	MODERN SPECIES	16	Slc5a2 (MGP_CAROLIEiJ_G0030545)	Rusf1 (MGP_CAROLIEiJ_G0030546)	Rgs10 (MGP_CAROLIEiJ_G0030547)	Tial1 (MGP_CAROLIEiJ_G0030548)	Bag3 (MGP_CAROLIEiJ_G0030549) #7	Inpp5f (MGP_CAROLIEiJ_G0030550) #8	Mcmbp (MGP_CAROLIEiJ_G0030551) #9	Sec23ip (MGP_CAROLIEiJ_G0030552) #10	Plpp4 (MGP_CAROLIEiJ_G0030553) #11	Wdr11 (MGP_CAROLIEiJ_G0030554) #12	Fgfr2 (MGP_CAROLIEiJ_G0030555) #13	Ate1 (MGP_CAROLIEiJ_G0030556) #15	Nsmce4a (MGP_CAROLIEiJ_G0030557) #17	Tacc2 (MGP_CAROLIEiJ_G0030558) #18	Btbd16 (MGP_CAROLIEiJ_G0030559) #20	MGP_CAROLIEiJ_G0030560 #22	Htra1 (MGP_CAROLIEiJ_G0030561) #23	4933402N03Rik (MGP_CAROLIEiJ_G0030562) #24	MGP_CAROLIEiJ_G0030563 #26	Cuzd1 (MGP_CAROLIEiJ_G0030564) #27	Fam24b (MGP_CAROLIEiJ_G0030565)	Fam24a (MGP_CAROLIEiJ_G0030566)	2310057M21Rik (MGP_CAROLIEiJ_G0030567) #28	Pstk (MGP_CAROLIEiJ_G0030568) #31	Ikzf5 (MGP_CAROLIEiJ_G0030569) #32	Acadsb (MGP_CAROLIEiJ_G0030570) #33	Hmx3 (MGP_CAROLIEiJ_G0030571) #34	Hmx2 (MGP_CAROLIEiJ_G0030572) #35	Bub3 (MGP_CAROLIEiJ_G0030573) #36	Gpr26 (MGP_CAROLIEiJ_G0030574)	Cpxm2 (MGP_CAROLIEiJ_G0030575)
Mus_B	ANCESTRAL SPECIES		ENSGT00390000000050	ENSGT00390000003648	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a
Mouse	MODERN SPECIES	16	Slc5a2 (ENSMUSG00000030781)	Rusf1 (ENSMUSG00000030780)	Rgs10 (ENSMUSG00000030844)	Tial1 (ENSMUSG00000030846)	Bag3 (ENSMUSG00000030847) #7	Inpp5f (ENSMUSG00000042105) #8	Mcmbp (ENSMUSG00000048170) #9	Sec23ip (ENSMUSG00000055319) #10	Plpp4 (ENSMUSG00000070366) #11	Wdr11 (ENSMUSG00000042055) #12	Fgfr2 (ENSMUSG00000030849) #13	Ate1 (ENSMUSG00000030850) #15	Nsmce4a (ENSMUSG00000040331) #17	Tacc2 (ENSMUSG00000030852) #18	Btbd16 (ENSMUSG00000040298) #20	Plekha1 (ENSMUSG00000040268) #22	Htra1 (ENSMUSG00000006205) #23	Dmbt1 (ENSMUSG00000047517) #25	4933402N03Rik (ENSMUSG00000013668) #24	Cdcp3 (ENSMUSG00000006204) #26	Cuzd1 (ENSMUSG00000040205) #27	Fam24b (ENSMUSG00000030858)	Fam24a (ENSMUSG00000030859)	2310057M21Rik (ENSMUSG00000040177) #28	Pstk (ENSMUSG00000063179) #31	Ikzf5 (ENSMUSG00000040167) #32	Acadsb (ENSMUSG00000030861) #33	Hmx3 (ENSMUSG00000040148) #34	Hmx2 (ENSMUSG00000050100) #35	Bub3 (ENSMUSG00000066979) #36	Gpr26 (ENSMUSG00000040125)
Mus_C	ANCESTRAL SPECIES	14	ENSGT00390000000050	ENSGT00390000003648	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602.g.a #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00390000005511 #24	ENSGT00940000162108.tb #26	ENSGT00940000154525.b.a #27	ENSGT00940000164044.b	ENSGT00940000164044.a	ENSGT00390000017384 #28	ENSGT00390000017554 #31	ENSGT00940000155035 #32	ENSGT00940000156525 #33	ENSGT00940000158286 #34	ENSGT00940000160392 #35	ENSGT00950000183091.A.a #36	ENSGT00950000183001.a.a	ENSGT00940000156414
Steppe mouse	MODERN SPECIES	3190	ENSMSIG00000007441	Inpp5f (ENSMSIG00000007462) #8	ENSMSIG00000007565	Mcmbp (ENSMSIG00000007578) #9	Sec23ip (ENSMSIG00000007682) #10	ENSMSIG00000007730	Plpp4 (ENSMSIG00000007743) #11	ENSMSIG00000007803	Wdr11 (ENSMSIG00000007834) #12	Fgfr2 (ENSMSIG00000007996) #13	Ate1 (ENSMSIG00000008300) #15	ENSMSIG00000008533	Nsmce4a (ENSMSIG00000008558) #17	Tacc2 (ENSMSIG00000008632) #18	Btbd16 (ENSMSIG00000008853) #20	ENSMSIG00000008942 #22	Htra1 (ENSMSIG00000009092) #23
spretus	MODERN SPECIES	16	Slc5a2 (MGP_SPRETEiJ_G0031659)	Rusf1 (MGP_SPRETEiJ_G0031660)	Rgs10 (MGP_SPRETEiJ_G0031661)	Tial1 (MGP_SPRETEiJ_G0031662)	Bag3 (MGP_SPRETEiJ_G0031663) #7	Inpp5f (MGP_SPRETEiJ_G0031664) #8	Mcmbp (MGP_SPRETEiJ_G0031665) #9	Sec23ip (MGP_SPRETEiJ_G0031666) #10	Plpp4 (MGP_SPRETEiJ_G0031667) #11	Wdr11 (MGP_SPRETEiJ_G0031668) #12	Fgfr2 (MGP_SPRETEiJ_G0031669) #13	Ate1 (MGP_SPRETEiJ_G0031670) #15	Nsmce4a (MGP_SPRETEiJ_G0031671) #17	Tacc2 (MGP_SPRETEiJ_G0031672) #18	Btbd16 (MGP_SPRETEiJ_G0031673) #20	Plekha1 (MGP_SPRETEiJ_G0031674) #22	Htra1 (MGP_SPRETEiJ_G0031675) #23	4933402N03Rik (MGP_SPRETEiJ_G0031676) #24	MGP_SPRETEiJ_G0031677 #26	Cuzd1 (MGP_SPRETEiJ_G0031678) #27	Fam24b (MGP_SPRETEiJ_G0031679)	Fam24a (MGP_SPRETEiJ_G0031680)	2310057M21Rik (MGP_SPRETEiJ_G0031681) #28	Pstk (MGP_SPRETEiJ_G0031682) #31	Ikzf5 (MGP_SPRETEiJ_G0031683) #32	Acadsb (MGP_SPRETEiJ_G0031684) #33	Hmx3 (MGP_SPRETEiJ_G0031685) #34	Hmx2 (MGP_SPRETEiJ_G0031686) #35	Bub3 (MGP_SPRETEiJ_G0031687) #36	Gpr26 (MGP_SPRETEiJ_G0031688)	Cpxm2 (MGP_SPRETEiJ_G0031689)
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00940000153430.a.b	ENSGT00940000160702.b	ENSGT00940000161426	ENSGT00940000160482	ENSGT00940000159204 #7	ENSGT00940000155996 #8	ENSGT00390000017265 #9	ENSGT00940000156602 #10	ENSGT00940000158288 #11	ENSGT00390000004068 #12	ENSGT00940000155447 #13	ENSGT00500000044926 #15	ENSGT00390000011476 #17	ENSGT00940000157052 #18	ENSGT00940000161718 #20	ENSGT00940000155157 #22	ENSGT00940000156955 #23	ENSGT00950000183145.E #25
Pika	MODERN SPECIES	2268													NSMCE4A (ENSOPRG00000011986) #17	TACC2 (ENSOPRG00000012006) #18	BTBD16 (ENSOPRG00000012074) #20	PLEKHA1 (ENSOPRG00000012090) #22	HTRA1 (ENSOPRG00000012106) #23
Rabbit	MODERN SPECIES	9	RGS10 (ENSOCUG00000014618)	TIAL1 (ENSOCUG00000003783)	BAG3 (ENSOCUG00000011696) #7	INPP5F (ENSOCUG00000002226) #8	MCMBP (ENSOCUG00000002235) #9	SEC23IP (ENSOCUG00000003141) #10	ENSOCUG00000017933 #11	WDR11 (ENSOCUG00000013912) #12	ENSOCUG00000001764	FGFR2 (ENSOCUG00000007069) #13	ATE1 (ENSOCUG00000003373) #15	NSMCE4A (ENSOCUG00000000820) #17	ENSOCUG00000026111 #18	ENSOCUG00000000821 #18	BTBD16 (ENSOCUG00000000825) #20	PLEKHA1 (ENSOCUG00000002100) #22	HTRA1 (ENSOCUG00000013478) #23	ENSOCUG00000013488 #25	ENSOCUG00000032261	C10orf120 (ENSOCUG00000006564) #24	CYP2E1 (ENSOCUG00000007724)	ENSOCUG00000007271	ENSOCUG00000016735	ENSOCUG00000026878	ENSOCUG00000023927	MTG1 (ENSOCUG00000000484)	PAOX (ENSOCUG00000000479)	ECHS1 (ENSOCUG00000000473)	ENSOCUG00000000470	ENSOCUG00000029628	ADAM8 (ENSOCUG00000001216)