Glires ANCESTRAL SPECIES 23 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008413 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 Rodentia ANCESTRAL SPECIES 23 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT00390000008413 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 Rodentia_A ANCESTRAL SPECIES 23 ENSGT00530000063698.a.b ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT00390000008413 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 Hystricomorpha DUPLICATION Hystricomorpha DUPLICATION Hystricomorpha DUPLICATION Hystricomorpha ANCESTRAL SPECIES 32 ENSGT00530000063698.a.b ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920.o.a.b #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT00390000008413 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 Hystricomorpha_a ANCESTRAL SPECIES 26 ENSGT00530000063698.a.b ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920.o.a.b #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 ENSGT00530000063835.b Guinea pig MODERN SPECIES 14 ENSCPOG00000006064 #20 ADCYAP1 (ENSCPOG00000015151) #21 YES1 (ENSCPOG00000015578) #22 ENOSF1 (ENSCPOG00000015576) #23 TYMS (ENSCPOG00000015574) #24 CLUL1 (ENSCPOG00000015573) #25 CETN1 (ENSCPOG00000022066) #26 COLEC12 (ENSCPOG00000010983) #27 THOC1 (ENSCPOG00000000959) #28 USP14 (ENSCPOG00000000958) #29 ROCK1 (ENSCPOG00000010474) #30 GREB1L (ENSCPOG00000023625) #31 ENSCPOG00000002728 #32 SNRPD1 (ENSCPOG00000004679) #33 ABHD3 (ENSCPOG00000002099) #34 ENSCPOG00000033037 #35 MIB1 (ENSCPOG00000005351) #36 GATA6 (ENSCPOG00000026126) #37 Hystricomorpha_b ANCESTRAL SPECIES 21 ENSGT00940000158929 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920.o.a.b #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 ENSGT00530000063835.b Long-tailed chinchilla MODERN SPECIES 109 ZBTB14 (ENSCLAG00000015733) AKAIN1 (ENSCLAG00000012253) DLGAP1 (ENSCLAG00000007165) TGIF1 (ENSCLAG00000008448) MYL12B (ENSCLAG00000008854) MYL12A (ENSCLAG00000011666) MYOM1 (ENSCLAG00000009876) LPIN2 (ENSCLAG00000016431) EMILIN2 (ENSCLAG00000007221) SMCHD1 (ENSCLAG00000008351) NDC80 (ENSCLAG00000011120) METTL4 (ENSCLAG00000011739) ENSCLAG00000011958 ENSCLAG00000007052 ADCYAP1 (ENSCLAG00000007209) #21 YES1 (ENSCLAG00000007748) #22 ENOSF1 (ENSCLAG00000008600) #23 TYMS (ENSCLAG00000011426) #24 CLUL1 (ENSCLAG00000011935) #25 CETN1 (ENSCLAG00000017717) #26 COLEC12 (ENSCLAG00000008952) #27 THOC1 (ENSCLAG00000009117) #28 USP14 (ENSCLAG00000008514) #29 ROCK1 (ENSCLAG00000012548) #30 GREB1L (ENSCLAG00000009372) #31 ESCO1 (ENSCLAG00000007066) #32 SNRPD1 (ENSCLAG00000008691) #33 ABHD3 (ENSCLAG00000009009) #34 MIB1 (ENSCLAG00000008780) #36 GATA6 (ENSCLAG00000007033) #37 RBBP8 (ENSCLAG00000007466) Degu MODERN SPECIES 116 DLGAP1 (ENSODEG00000006056) TGIF1 (ENSODEG00000005910) ENSODEG00000005356 MYL12A (ENSODEG00000006110) MYOM1 (ENSODEG00000006774) ENSODEG00000006584 LPIN2 (ENSODEG00000005432) EMILIN2 (ENSODEG00000007278) SMCHD1 (ENSODEG00000006113) ENSODEG00000006655 NDC80 (ENSODEG00000006479) METTL4 (ENSODEG00000006068) ENSODEG00000019310 ENSODEG00000007303 ADCYAP1 (ENSODEG00000007089) #21 YES1 (ENSODEG00000005726) #22 ENOSF1 (ENSODEG00000005113) #23 ENSODEG00000006402 #24 CETN1 (ENSODEG00000019340) #26 COLEC12 (ENSODEG00000007701) #27 ENSODEG00000019254 THOC1 (ENSODEG00000006623) #28 ENSODEG00000005831 #29 ROCK1 (ENSODEG00000006532) #30 GREB1L (ENSODEG00000006122) #31 ENSODEG00000004902 #32 ENSODEG00000019279 SNRPD1 (ENSODEG00000005764) #33 ABHD3 (ENSODEG00000005394) #34 MIB1 (ENSODEG00000005087) #36 GATA6 (ENSODEG00000004956) #37 Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 9 MYL12A (ENSHGLG00000040455) MYOM1 (ENSHGLG00000014511) LPIN2 (ENSHGLG00000007840) ENSHGLG00000044239 SMCHD1 (ENSHGLG00000003560) ENSHGLG00000006458 ENSHGLG00000033709 ENSHGLG00000004250 ENSHGLG00000004061 ENSHGLG00000038851 ENSHGLG00000035395 ENSHGLG00000041049 ENSHGLG00000046692 ADCYAP1 (ENSHGLG00000034296) #21 ENSHGLG00000037949 ENSHGLG00000005389 #22 ENOSF1 (ENSHGLG00000004003) #23 TYMS (ENSHGLG00000003556) #24 CLUL1 (ENSHGLG00000007174) #25 CETN1 (ENSHGLG00000050145) #26 COLEC12 (ENSHGLG00000004045) #27 THOC1 (ENSHGLG00000003712) #28 USP14 (ENSHGLG00000006110) #29 ENSHGLG00000040346 ENSHGLG00000003509 #30 GREB1L (ENSHGLG00000017223) #31 ESCO1 (ENSHGLG00000011303) #32 SNRPD1 (ENSHGLG00000007152) #33 ENSHGLG00000006069 ABHD3 (ENSHGLG00000004626) #34 MIB1 (ENSHGLG00000003897) #36 Naked mole-rat female MODERN SPECIES 18 ZDHHC22 (ENSHGLG00000033008) CIPC (ENSHGLG00000041872) IRF2BPL (ENSHGLG00000036168) LRRC74A (ENSHGLG00000013955) ANGEL1 (ENSHGLG00000019080) VASH1 (ENSHGLG00000014181) ENSHGLG00000009813 ESRRB (ENSHGLG00000007373) GPATCH2L (ENSHGLG00000011249) IFT43 (ENSHGLG00000006159) TGFB3 (ENSHGLG00000041469) ENSHGLG00000009260 ERG28 (ENSHGLG00000035965) FLVCR2 (ENSHGLG00000012149) BATF (ENSHGLG00000009995) ENSHGLG00000032847 #22 ENSHGLG00000034007 JDP2 (ENSHGLG00000046590) ENSHGLG00000012043 Fos (ENSHGLG00000009642) TMED10 (ENSHGLG00000009862) ENSHGLG00000011281 ZC2HC1C (ENSHGLG00000012165) ENSHGLG00000014222 ENSHGLG00000040406 MLH3 (ENSHGLG00000015005) EIF2B2 (ENSHGLG00000016520) ENSHGLG00000050804 ENSHGLG00000018678 ENSHGLG00000013243 RPS6KL1 (ENSHGLG00000013483) Naked mole-rat female MODERN SPECIES 2 POLR1D (ENSHGLG00000039229) ENSHGLG00000003202 GSX1 (ENSHGLG00000039858) PDX1 (ENSHGLG00000010243) CDX2 (ENSHGLG00000009166) URAD (ENSHGLG00000008479) FLT3 (ENSHGLG00000005717) PAN3 (ENSHGLG00000018782) FLT1 (ENSHGLG00000003643) ENSHGLG00000008991 SLC46A3 (ENSHGLG00000007999) ENSHGLG00000039882 ENSHGLG00000012383 ENSHGLG00000013589 ENSHGLG00000019220 ENSHGLG00000033244 #22 UBL3 (ENSHGLG00000040587) KATNAL1 (ENSHGLG00000003538) ENSHGLG00000003352 USPL1 (ENSHGLG00000036213) ALOX5AP (ENSHGLG00000013689) MEDAG (ENSHGLG00000037818) TEX26 (ENSHGLG00000018916) HSPH1 (ENSHGLG00000006908) ENSHGLG00000039932 ENSHGLG00000013471 ENSHGLG00000047678 ENSHGLG00000018220 ENSHGLG00000006352 ENSHGLG00000002160 ENSHGLG00000009276 Hystricomorpha ANCESTRAL SPECIES ENSGT00940000154920.o.a.a ##22 Naked mole-rat female MODERN SPECIES 30 ENSHGLG00000020069 ENSHGLG00000010465 ENSHGLG00000042602 ENSHGLG00000001699 ENSHGLG00000001780 TRIM7 (ENSHGLG00000032459) ENSHGLG00000032649 ENSHGLG00000019990 ENSHGLG00000002177 ENSHGLG00000034382 ENSHGLG00000002247 ENSHGLG00000041668 ENSHGLG00000044699 ENSHGLG00000043237 ENSHGLG00000046550 ENSHGLG00000000457 ##22 ENSHGLG00000032399 ENSHGLG00000049798 FAM49A (ENSHGLG00000039956) ENSHGLG00000033217 TMEM72 (ENSHGLG00000046989) ENSHGLG00000050785 ENSHGLG00000032856 ENSHGLG00000011717 RNF208 (ENSHGLG00000032468) CYSRT1 (ENSHGLG00000013467) RNF224 (ENSHGLG00000012723) SLC34A3 (ENSHGLG00000012039) TUBB4B (ENSHGLG00000018708) FAM166A (ENSHGLG00000019237) ENSHGLG00000046256 Hystricomorpha ANCESTRAL SPECIES ENSGT00940000154920.o.b ##22 Naked mole-rat female MODERN SPECIES 3 OR1L3 (ENSHGLG00000020769) ENSHGLG00000010749 ENSHGLG00000039540 ENSHGLG00000042559 ENSHGLG00000036598 OR1N1 (ENSHGLG00000020665) OR1J4 (ENSHGLG00000047494) OR1J2 (ENSHGLG00000021271) OR1J1 (ENSHGLG00000041026) ENSHGLG00000041786 ENSHGLG00000037075 ENSHGLG00000043538 ENSHGLG00000049533 ENSHGLG00000045250 ENSHGLG00000046365 ENSHGLG00000010134 ##22 ENSHGLG00000033999 ENSHGLG00000033281 ENSHGLG00000041511 PTGS1 (ENSHGLG00000010418) ENSHGLG00000031982 MRRF (ENSHGLG00000044931) RBM18 (ENSHGLG00000011073) LHX6 (ENSHGLG00000011308) MORN5 (ENSHGLG00000048025) NDUFA8 (ENSHGLG00000011835) ENSHGLG00000034480 ENSHGLG00000034969 ENSHGLG00000012023 DAB2IP (ENSHGLG00000012363) GLT6D1 (ENSHGLG00000036677) Hystricomorpha ANCESTRAL SPECIES ENSGT00940000154920.p ##22 Naked mole-rat female MODERN SPECIES 16 IER5 (ENSHGLG00000034929) MR1 (ENSHGLG00000009714) STX6 (ENSHGLG00000008526) KIAA1614 (ENSHGLG00000007239) XPR1 (ENSHGLG00000003855) ACBD6 (ENSHGLG00000044832) ENSHGLG00000038918 LHX4 (ENSHGLG00000009524) QSOX1 (ENSHGLG00000008148) CEP350 (ENSHGLG00000003729) ENSHGLG00000045632 ENSHGLG00000034354 ENSHGLG00000050289 ENSHGLG00000039412 ENSHGLG00000004930 ENSHGLG00000034194 ##22 ENSHGLG00000004562 RGS8 (ENSHGLG00000032497) ENSHGLG00000037076 ENSHGLG00000010481 DHX9 (ENSHGLG00000005769) ENSHGLG00000005972 ENSHGLG00000040662 LAMC1 (ENSHGLG00000017483) ENSHGLG00000015294 LAMC2 (ENSHGLG00000018611) ENSHGLG00000047479 NMNAT2 (ENSHGLG00000013656) SMG7 (ENSHGLG00000009353) ENSHGLG00000048693 ENSHGLG00000048289 Sciuridae ANCESTRAL SPECIES 31 ENSGT00530000063698.a.b ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786.gb #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 ENSGT00530000063835.b Marmotini ANCESTRAL SPECIES 31 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00940000162721 ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786.gb #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 ENSGT00530000063835.b Alpin marmot MODERN SPECIES 10 EPB41L3 (ENSMMMG00000012882) ZBTB14 (ENSMMMG00000012859) ENSMMMG00000012857 AKAIN1 (ENSMMMG00000012852) DLGAP1 (ENSMMMG00000012118) TGIF1 (ENSMMMG00000012104) MYL12B (ENSMMMG00000012089) MYL12A (ENSMMMG00000012076) MYOM1 (ENSMMMG00000011990) LPIN2 (ENSMMMG00000011908) EMILIN2 (ENSMMMG00000011901) SMCHD1 (ENSMMMG00000010857) NDC80 (ENSMMMG00000010813) METTL4 (ENSMMMG00000010797) ADCYAP1 (ENSMMMG00000010782) #21 YES1 (ENSMMMG00000010661) #22 ENOSF1 (ENSMMMG00000010652) #23 TYMS (ENSMMMG00000010633) #24 CLUL1 (ENSMMMG00000010598) #25 CETN1 (ENSMMMG00000010586) #26 ENSMMMG00000010580 ENSMMMG00000010565 COLEC12 (ENSMMMG00000010551) #27 THOC1 (ENSMMMG00000010509) #28 USP14 (ENSMMMG00000010444) #29 ROCK1 (ENSMMMG00000010370) #30 ENSMMMG00000010344 GREB1L (ENSMMMG00000010290) #31 ENSMMMG00000010274 ESCO1 (ENSMMMG00000010226) #32 SNRPD1 (ENSMMMG00000010210) #33 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 4 AKAIN1 (ENSSVLG00005019389) ENSSVLG00005019491 DLGAP1 (ENSSVLG00005019856) TGIF1 (ENSSVLG00005020396) MYL12B (ENSSVLG00005020487) MYL12A (ENSSVLG00005020518) MYOM1 (ENSSVLG00005020656) LPIN2 (ENSSVLG00005021537) EMILIN2 (ENSSVLG00005021595) SMCHD1 (ENSSVLG00005021629) ENSSVLG00005021684 NDC80 (ENSSVLG00005021715) ENSSVLG00005021834 ENSSVLG00005021938 ADCYAP1 (ENSSVLG00005021960) #21 ENSSVLG00005022001 #22 ENOSF1 (ENSSVLG00005022213) #23 ENSSVLG00005022566 #24 CLUL1 (ENSSVLG00005022648) #25 CETN1 (ENSSVLG00005022708) #26 COLEC12 (ENSSVLG00005022720) #27 ENSSVLG00005022749 THOC1 (ENSSVLG00005022810) #28 USP14 (ENSSVLG00005023043) #29 ROCK1 (ENSSVLG00005023445) #30 ENSSVLG00005023478 ENSSVLG00005023492 ENSSVLG00005023520 ENSSVLG00005005351 ENSSVLG00005005395 ENSSVLG00005005411 Eurasian red squirrel MODERN SPECIES 13 PLAU (ENSSVLG00005013500) VCL (ENSSVLG00005013208) AP3M1 (ENSSVLG00005012809) ENSSVLG00005012767 ENSSVLG00005011968 DUSP29 (ENSSVLG00005011302) DUSP13 (ENSSVLG00005011100) SAMD8 (ENSSVLG00005011005) ENSSVLG00005010821 COMTD1 (ENSSVLG00005010754) ZNF503 (ENSSVLG00005010698) LRMDA (ENSSVLG00005010576) KCNMA1 (ENSSVLG00005007882) ENSSVLG00005006853 ENSSVLG00005006820 ENSSVLG00005006809 #22 ENSSVLG00005006795 DLG5 (ENSSVLG00005006751) POLR3A (ENSSVLG00005006708) ENSSVLG00005006601 ZMIZ1 (ENSSVLG00005006475) ENSSVLG00005006423 ZCCHC24 (ENSSVLG00005006394) ENSSVLG00005006356 ENSSVLG00005006337 ANXA11 (ENSSVLG00005006301) PLAC9 (ENSSVLG00005006256) TMEM254 (ENSSVLG00005006215) ENSSVLG00005006190 ENSSVLG00005006135 ENSSVLG00005006106 Rodentia_B ANCESTRAL SPECIES 27 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 ENSGT00530000063835.b Kangaroo rat MODERN SPECIES 344 ENSDORG00000029047 Adcyap1 (ENSDORG00000026095) #21 Yes1 (ENSDORG00000002603) #22 ENSDORG00000015074 #23 Tyms (ENSDORG00000015072) #24 Cetn1 (ENSDORG00000003995) #26 Colec12 (ENSDORG00000003553) #27 Thoc1 (ENSDORG00000008060) #28 Usp14 (ENSDORG00000008059) #29 Rock1 (ENSDORG00000010078) #30 ENSDORG00000029933 Greb1l (ENSDORG00000015358) #31 ENSDORG00000023581 Esco1 (ENSDORG00000025246) #32 Snrpd1 (ENSDORG00000008349) #33 Abhd3 (ENSDORG00000024920) #34 Mib1 (ENSDORG00000009847) #36 Gata6 (ENSDORG00000029367) #37 Myomorpha ANCESTRAL SPECIES 45 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 ENSGT00530000063835.b Lesser Egyptian jerboa MODERN SPECIES 55 ENSJJAG00000011145 Dok6 (ENSJJAG00000017009) ENSJJAG00000023825 ENSJJAG00000016953 Socs6 (ENSJJAG00000017873) Cbln2 (ENSJJAG00000021520) Neto1 (ENSJJAG00000024284) Cyb5a (ENSJJAG00000020003) Cndp2 (ENSJJAG00000013882) Cndp1 (ENSJJAG00000022953) Zadh2 (ENSJJAG00000013604) ENSJJAG00000017663 Zfp516 (ENSJJAG00000016237) Ndc80 (ENSJJAG00000020131) Adcyap1 (ENSJJAG00000024315) #21 Yes1 (ENSJJAG00000006110) #22 ENSJJAG00000019240 #23 Tyms (ENSJJAG00000020713) #24 Cetn1 (ENSJJAG00000010533) #26 Colec12 (ENSJJAG00000014240) #27 ENSJJAG00000014893 #28 Usp14 (ENSJJAG00000001720) #29 Rock1 (ENSJJAG00000012599) #30 Greb1l (ENSJJAG00000019827) #31 ENSJJAG00000024289 #32 Snrpd1 (ENSJJAG00000017698) #33 Abhd3 (ENSJJAG00000010354) #34 Mib1 (ENSJJAG00000014732) #36 Gata6 (ENSJJAG00000007856) #37 Rbbp8 (ENSJJAG00000023640) Cables1 (ENSJJAG00000024283) Muroidea ANCESTRAL SPECIES 46 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00940000160814 #37 ENSGT00530000063835.b Upper Galilee mountains blind mole rat MODERN SPECIES 536 Adcyap1 (ENSNGAG00000021652) #21 Yes1 (ENSNGAG00000024151) #22 ENSNGAG00000020252 #23 Tyms (ENSNGAG00000024065) #24 Cetn1 (ENSNGAG00000012639) #26 Colec12 (ENSNGAG00000017872) #27 ENSNGAG00000001401 #28 Usp14 (ENSNGAG00000018694) #29 Rock1 (ENSNGAG00000013091) #30 Greb1l (ENSNGAG00000023971) #31 Esco1 (ENSNGAG00000000995) #32 Snrpd1 (ENSNGAG00000023946) #33 Abhd3 (ENSNGAG00000020720) #34 ENSNGAG00000021505 Mib1 (ENSNGAG00000023747) #36 Gata6 (ENSNGAG00000019766) #37 Rbbp8 (ENSNGAG00000011276) Muroidea_A ANCESTRAL SPECIES 19 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 Murinae ANCESTRAL SPECIES 9 ENSGT00530000063698.a.b ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 Mus ANCESTRAL SPECIES 10 ENSGT00390000004700.b ENSGT00940000153417.B ENSGT00390000004923.B ENSGT00390000005345 ENSGT00940000158595 ENSGT01000000214622.a.a.b ENSGT00950000183172.C ENSGT00390000005572 ENSGT00940000155320 ENSGT00390000010130 ENSGT00390000005743 ENSGT00390000004208 ENSGT00940000158876 ENSGT00530000063883 ENSGT00940000154644.n ENSGT00940000154920 #22 Mus_A ANCESTRAL SPECIES 6 ENSGT00390000004700.b ENSGT00940000153417.B ENSGT00390000004923.B ENSGT00390000005345 ENSGT00940000158595 ENSGT01000000214622.a.a.b ENSGT00950000183172.C ENSGT00390000005572 ENSGT00940000155320 ENSGT00390000010130 ENSGT00390000005743 ENSGT00390000004208 ENSGT00940000158876 ENSGT00530000063883 ENSGT00940000154644.n ENSGT00940000154920 #22 ENSGT00390000013484 ENSGT00520000055626.a ENSGT00390000016559 ENSGT01090000260061.c.a.c.b ENSGT00940000155844 ENSGT00940000159900 ENSGT00940000157061.a ENSGT00940000153203.B ENSGT00390000000377 ENSGT00940000162861 ENSGT00530000063371.A ENSGT00860000135700 ENSGT00390000008738 ENSGT00390000013284 ENSGT00940000158858 Mus_B ANCESTRAL SPECIES 4 ENSGT00390000004700.b ENSGT00940000153417.B ENSGT00390000004923.B ENSGT00390000005345 ENSGT00940000158595 ENSGT01000000214622.a.a.b ENSGT00950000183172.C ENSGT00390000005572 ENSGT00940000155320 ENSGT00390000010130 ENSGT00390000005743 ENSGT00390000004208 ENSGT00940000158876 ENSGT00530000063883 ENSGT00940000154644.n ENSGT00940000154920 #22 ENSGT00390000013484 ENSGT00520000055626.a ENSGT00390000016559 ENSGT01090000260061.c.a.c.b ENSGT00940000155844 ENSGT00940000159900 ENSGT00940000157061.a ENSGT00940000153203.B ENSGT00390000000377 ENSGT00940000162861 ENSGT00530000063371.A ENSGT00860000135700 ENSGT00390000008738 ENSGT00390000013284 ENSGT00940000158858 Mouse MODERN SPECIES 14 Krtcap3 (ENSMUSG00000029149) Ift172 (ENSMUSG00000038564) Fndc4 (ENSMUSG00000038552) Gckr (ENSMUSG00000059434) Zfp512 (ENSMUSG00000062761) Ccdc121 (ENSMUSG00000029138) Gpn1 (ENSMUSG00000064037) Supt7l (ENSMUSG00000053134) Slc4a1ap (ENSMUSG00000029141) Mrpl33 (ENSMUSG00000106918) Rbks (ENSMUSG00000029136) Babam2 (ENSMUSG00000052139) Fosl2 (ENSMUSG00000029135) Plb1 (ENSMUSG00000029134) Ppp1cb (ENSMUSG00000014956) Yes1 (ENSMUSG00000014932) #22 Pisd (ENSMUSG00000023452) Prr14l (ENSMUSG00000054280) Depdc5 (ENSMUSG00000037426) Ywhah (ENSMUSG00000018965) Slc5a1 (ENSMUSG00000011034) Spon2 (ENSMUSG00000037379) Ctbp1 (ENSMUSG00000037373) Maea (ENSMUSG00000079562) Uvssa (ENSMUSG00000037355) Nkx1-1 (ENSMUSG00000029112) Fam53a (ENSMUSG00000037339) Slbp (ENSMUSG00000004642) Tmem129 (ENSMUSG00000019295) Tacc3 (ENSMUSG00000037313) Fgfr3 (ENSMUSG00000054252) Mus_C ANCESTRAL SPECIES 4 ENSGT00390000004700.b ENSGT00940000153417.B ENSGT00390000004923.B ENSGT00390000005345 ENSGT00940000158595 ENSGT01000000214622.a.a.b ENSGT00950000183172.C ENSGT00390000005572 ENSGT00940000155320 ENSGT00390000010130 ENSGT00390000005743 ENSGT00390000004208 ENSGT00940000158876 ENSGT00530000063883 ENSGT00940000154644.n ENSGT00940000154920 #22 ENSGT00390000013484 ENSGT00520000055626.a ENSGT00390000016559 ENSGT01090000260061.c.a.c.b ENSGT00940000155844 ENSGT00940000159900 ENSGT00940000157061.a ENSGT00940000153203.B ENSGT00390000000377 ENSGT00940000162861 ENSGT00530000063371.A ENSGT00860000135700 ENSGT00390000008738 ENSGT00390000013284 ENSGT00940000158858 Steppe mouse MODERN SPECIES 95 Zfp512 (ENSMSIG00000019861) Gpn1 (ENSMSIG00000019957) Supt7l (ENSMSIG00000019995) Slc4a1ap (ENSMSIG00000020013) Mrpl33 (ENSMSIG00000020079) Rbks (ENSMSIG00000020092) ENSMSIG00000020110 Babam2 (ENSMSIG00000020121) ENSMSIG00000020960 Fosl2 (ENSMSIG00000020964) ENSMSIG00000020977 Plb1 (ENSMSIG00000020988) ENSMSIG00000021257 Ppp1cb (ENSMSIG00000021280) Yes1 (ENSMSIG00000021303) #22 Pisd (ENSMSIG00000021330) Prr14l (ENSMSIG00000021404) ENSMSIG00000021437 spretus MODERN SPECIES 14 Krtcap3 (MGP_SPRETEiJ_G0028085) Ift172 (MGP_SPRETEiJ_G0028086) Fndc4 (MGP_SPRETEiJ_G0028087) Gckr (MGP_SPRETEiJ_G0028088) Zfp512 (MGP_SPRETEiJ_G0028089) Ccdc121 (MGP_SPRETEiJ_G0028090) Gpn1 (MGP_SPRETEiJ_G0028091) Supt7l (MGP_SPRETEiJ_G0028092) Slc4a1ap (MGP_SPRETEiJ_G0028093) MGP_SPRETEiJ_G0028094 Rbks (MGP_SPRETEiJ_G0028095) Babam2 (MGP_SPRETEiJ_G0028096) Fosl2 (MGP_SPRETEiJ_G0028097) Plb1 (MGP_SPRETEiJ_G0028098) Ppp1cb (MGP_SPRETEiJ_G0028099) Yes1 (MGP_SPRETEiJ_G0028100) #22 Pisd (MGP_SPRETEiJ_G0028101) MGP_SPRETEiJ_G0028102 Depdc5 (MGP_SPRETEiJ_G0028103) Ywhah (MGP_SPRETEiJ_G0028104) Slc5a1 (MGP_SPRETEiJ_G0028105) Spon2 (MGP_SPRETEiJ_G0028106) Ctbp1 (MGP_SPRETEiJ_G0028107) Maea (MGP_SPRETEiJ_G0028108) Uvssa (MGP_SPRETEiJ_G0028109) Nkx1-1 (MGP_SPRETEiJ_G0028110) Fam53a (MGP_SPRETEiJ_G0028111) MGP_SPRETEiJ_G0028112 Slbp (MGP_SPRETEiJ_G0028113) Tmem129 (MGP_SPRETEiJ_G0028114) Tacc3 (MGP_SPRETEiJ_G0028115) Ryukyu mouse MODERN SPECIES 14 Krtcap3 (MGP_CAROLIEiJ_G0027089) MGP_CAROLIEiJ_G0027090 Fndc4 (MGP_CAROLIEiJ_G0027091) Gckr (MGP_CAROLIEiJ_G0027092) Zfp512 (MGP_CAROLIEiJ_G0027093) MGP_CAROLIEiJ_G0027094 Gpn1 (MGP_CAROLIEiJ_G0027095) Supt7l (MGP_CAROLIEiJ_G0027096) Slc4a1ap (MGP_CAROLIEiJ_G0027097) MGP_CAROLIEiJ_G0027098 Rbks (MGP_CAROLIEiJ_G0027099) Babam2 (MGP_CAROLIEiJ_G0027100) Fosl2 (MGP_CAROLIEiJ_G0027101) Plb1 (MGP_CAROLIEiJ_G0027102) Ppp1cb (MGP_CAROLIEiJ_G0027103) Yes1 (MGP_CAROLIEiJ_G0027104) #22 MGP_CAROLIEiJ_G0027105 Prr14l (MGP_CAROLIEiJ_G0027106) Depdc5 (MGP_CAROLIEiJ_G0027107) MGP_CAROLIEiJ_G0027108 Slc5a1 (MGP_CAROLIEiJ_G0027109) Spon2 (MGP_CAROLIEiJ_G0027110) Ctbp1 (MGP_CAROLIEiJ_G0027111) Maea (MGP_CAROLIEiJ_G0027112) Uvssa (MGP_CAROLIEiJ_G0027113) Nkx1-1 (MGP_CAROLIEiJ_G0027114) Fam53a (MGP_CAROLIEiJ_G0027115) MGP_CAROLIEiJ_G0027116 Slbp (MGP_CAROLIEiJ_G0027117) Tmem129 (MGP_CAROLIEiJ_G0027118) Tacc3 (MGP_CAROLIEiJ_G0027119) Shrew mouse MODERN SPECIES 20 Krtcap3 (MGP_PahariEiJ_G0029292) Ift172 (MGP_PahariEiJ_G0029291) Fndc4 (MGP_PahariEiJ_G0029290) MGP_PahariEiJ_G0029289 Zfp512 (MGP_PahariEiJ_G0029288) MGP_PahariEiJ_G0029287 Gpn1 (MGP_PahariEiJ_G0029286) Supt7l (MGP_PahariEiJ_G0029285) Slc4a1ap (MGP_PahariEiJ_G0029284) MGP_PahariEiJ_G0029283 Rbks (MGP_PahariEiJ_G0029282) Babam2 (MGP_PahariEiJ_G0029281) Fosl2 (MGP_PahariEiJ_G0029280) Plb1 (MGP_PahariEiJ_G0029279) Ppp1cb (MGP_PahariEiJ_G0029278) Yes1 (MGP_PahariEiJ_G0029277) #22 Rat MODERN SPECIES 19 Dlgap1 (ENSRNOG00000016196) Tgif1 (ENSRNOG00000015906) Myl12b (ENSRNOG00000015278) Myom1 (ENSRNOG00000057701) Lpin2 (ENSRNOG00000014876) Emilin2 (ENSRNOG00000014837) Smchd1 (ENSRNOG00000014319) ENSRNOG00000066469 Ndc80 (ENSRNOG00000013727) ENSRNOG00000069721 Mettl4 (ENSRNOG00000026280) Fam114a1l1 (ENSRNOG00000002110) ENSRNOG00000068876 Ppidl1 (ENSRNOG00000037230) Adcyap1 (ENSRNOG00000049882) #21 Yes1 (ENSRNOG00000037227) #22 Tyms (ENSRNOG00000037225) #24 Clul1 (ENSRNOG00000059237) #25 ENSRNOG00000070300 LOC108348229 (ENSRNOG00000069907) ENSRNOG00000067845 LOC100911813 (ENSRNOG00000067276) LOC120094815 (ENSRNOG00000067344) ENSRNOG00000067790 ENSRNOG00000066827 Tipinl1 (ENSRNOG00000037221) ENSRNOG00000067205 ENSRNOG00000063904 ENSRNOG00000069319 LOC103693502 (ENSRNOG00000066982) LOC120094817 (ENSRNOG00000062817) Cricetidae ANCESTRAL SPECIES 19 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 Cricetinae ANCESTRAL SPECIES 3 ENSGT00530000063698.a.b ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 Chinese hamster chok1gshd MODERN SPECIES 1 Dlgap1 (ENSCGRG00001010521) Tgif1 (ENSCGRG00001007018) Myl12b (ENSCGRG00001011388) Myl12a (ENSCGRG00001011344) Myom1 (ENSCGRG00001012204) Lpin2 (ENSCGRG00001012322) Emilin2 (ENSCGRG00001005288) Smchd1 (ENSCGRG00001011971) Ndc80 (ENSCGRG00001011888) ENSCGRG00001009792 Mettl4 (ENSCGRG00001005723) ENSCGRG00001010099 ENSCGRG00001012413 ENSCGRG00001010839 Adcyap1 (ENSCGRG00001007071) #21 Yes1 (ENSCGRG00001012390) #22 ENSCGRG00001007268 #23 ENSCGRG00001007642 #24 ENSCGRG00001011242 #25 Golden Hamster MODERN SPECIES 684 Sez6 (ENSMAUG00000017320) Pipox (ENSMAUG00000020672) Myo18a (ENSMAUG00000015981) Gm10277 (ENSMAUG00000021008) Cryba1 (ENSMAUG00000009942) Nufip2 (ENSMAUG00000005650) Taok1 (ENSMAUG00000019446) Abhd15 (ENSMAUG00000012533) ##34 ENSMAUG00000008115 Trp53i13 (ENSMAUG00000020444) Git1 (ENSMAUG00000017744) ENSMAUG00000007819 Coro6 (ENSMAUG00000011994) Ssh2 (ENSMAUG00000020745) Adcyap1 (ENSMAUG00000022205) #21 Yes1 (ENSMAUG00000022131) #22 Tyms (ENSMAUG00000007623) #24 Cricetidae_B ANCESTRAL SPECIES 62 ENSGT00940000157047 ENSGT00940000158052.a ENSGT00560000078638 ENSGT00940000156220 ENSGT00900000143817 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 Prairie vole MODERN SPECIES 150 ENSMOCG00000004125 Adcyap1 (ENSMOCG00000003306) #21 Yes1 (ENSMOCG00000002556) #22 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 20 Or7g16 (ENSPEMG00000029821) Or7g23 (ENSPEMG00000026466) Or7g25 (ENSPEMG00000010146) Or7g27 (ENSPEMG00000024399) ENSPEMG00000025034 Or7g30 (ENSPEMG00000028196) Or7g26 (ENSPEMG00000027966) Or7g32 (ENSPEMG00000009483) Or7g33 (ENSPEMG00000030470) ENSPEMG00000025740 Or7g35 (ENSPEMG00000026742) Zfp317 (ENSPEMG00000014576) ENSPEMG00000029483 ENSPEMG00000028448 Or7d11 (ENSPEMG00000008424) ENSPEMG00000010414 #22 ENSPEMG00000029897 ENSPEMG00000030392 Or7e177 (ENSPEMG00000027236) Or7e178 (ENSPEMG00000024659) ENSPEMG00000000647 ENSPEMG00000030281 ENSPEMG00000029248 ENSPEMG00000024432 Zfp26 (ENSPEMG00000016507) Zfp426 (ENSPEMG00000011985) Zfp266 (ENSPEMG00000014715) Zfp846 (ENSPEMG00000029414) Fbxl12 (ENSPEMG00000005521) ENSPEMG00000018867 Pin1 (ENSPEMG00000002291) Northern American deer mouse MODERN SPECIES 4 ENSPEMG00000027160 Dlgap1 (ENSPEMG00000020719) ENSPEMG00000031236 ENSPEMG00000026379 Myl12b (ENSPEMG00000022144) Myl12a (ENSPEMG00000021243) Myom1 (ENSPEMG00000010271) Lpin2 (ENSPEMG00000016819) Emilin2 (ENSPEMG00000000648) Smchd1 (ENSPEMG00000010741) Ndc80 (ENSPEMG00000011873) ENSPEMG00000012275 ENSPEMG00000021564 ENSPEMG00000021079 Adcyap1 (ENSPEMG00000026939) #21 ENSPEMG00000030907 #22 ENSPEMG00000023960 #23 Tyms (ENSPEMG00000022684) #24 ENSPEMG00000029175 #25 Sphkap (ENSPEMG00000023700) Daw1 (ENSPEMG00000013917) Ccl20 (ENSPEMG00000023283) Krtap28-13 (ENSPEMG00000026790) Gm47969 (ENSPEMG00000027248) Slc19a3 (ENSPEMG00000021706) Agfg1 (ENSPEMG00000024218) Tm4sf20 (ENSPEMG00000009177) Mff (ENSPEMG00000013271) Col4a3 (ENSPEMG00000022581) Col4a4 (ENSPEMG00000023902) Rhbdd1 (ENSPEMG00000022110) Lagomorpha ANCESTRAL SPECIES 41 ENSGT00940000158052.a ENSGT00940000162721 ENSGT00940000164798 ENSGT00560000078638 ENSGT00940000156220 ENSGT00940000155230 ENSGT00940000153607.c.b ENSGT00940000153607.c.a ENSGT00940000154982 ENSGT00940000156313 ENSGT01030000234633.B.a ENSGT00390000006950.n.p ENSGT00390000018386 ENSGT00390000016237 ENSGT00950000183154.b.a.b #21 ENSGT00940000154920 #22 ENSGT00390000014290 #23 ENSGT00390000014786 #24 ENSGT00530000063668.A #25 ENSGT00940000157209.jb #26 ENSGT00950000183074.A #27 ENSGT00390000016232 #28 ENSGT00390000009615 #29 ENSGT01030000234517.A #30 ENSGT00390000008413 ENSGT00390000008041.B #31 ENSGT00940000157762 #32 ENSGT00510000047245 #33 ENSGT00950000182902.a.c #34 ENSGT00940000156781 #36 ENSGT00400000022086.a Pika MODERN SPECIES 3658 YES1 (ENSOPRG00000006004) #22 ENOSF1 (ENSOPRG00000005979) #23 TYMS (ENSOPRG00000005955) #24 CLUL1 (ENSOPRG00000005939) #25 CETN1 (ENSOPRG00000005937) #26 Rabbit DUPLICATION Rabbit MODERN SPECIES 20 ENSOCUG00000023402 AKAIN1 (ENSOCUG00000035231) DLGAP1 (ENSOCUG00000013763) ENSOCUG00000029174 ENSOCUG00000037037 TGIF1 (ENSOCUG00000013752) ENSOCUG00000021304 MYOM1 (ENSOCUG00000008571) LPIN2 (ENSOCUG00000009433) EMILIN2 (ENSOCUG00000002553) SMCHD1 (ENSOCUG00000000020) NDC80 (ENSOCUG00000015410) METTL4 (ENSOCUG00000022390) ENSOCUG00000024410 ADCYAP1 (ENSOCUG00000009463) #21 YES1 (ENSOCUG00000005874) #22 ENOSF1 (ENSOCUG00000008678) #23 ENSOCUG00000008667 #24 CLUL1 (ENSOCUG00000008658) #25 CETN1 (ENSOCUG00000009188) #26 COLEC12 (ENSOCUG00000022216) #27 THOC1 (ENSOCUG00000011601) #28 USP14 (ENSOCUG00000011595) #29 ROCK1 (ENSOCUG00000004848) #30 ENSOCUG00000033695 GREB1L (ENSOCUG00000010962) #31 ESCO1 (ENSOCUG00000009587) #32 SNRPD1 (ENSOCUG00000023761) #33 ENSOCUG00000009176 #34 MIB1 (ENSOCUG00000005755) #36 ENSOCUG00000037512 Rabbit MODERN SPECIES 7 ENSOCUG00000017413 TARBP1 (ENSOCUG00000017418) ENSOCUG00000003968 ENSOCUG00000034600 TOMM20 (ENSOCUG00000021470) RBM34 (ENSOCUG00000009173) ARID4B (ENSOCUG00000006605) GGPS1 (ENSOCUG00000013581) ENSOCUG00000021833 TBCE (ENSOCUG00000017490) B3GALNT2 (ENSOCUG00000017502) ENSOCUG00000006831 ENSOCUG00000032324 LYST (ENSOCUG00000002867) NID1 (ENSOCUG00000016007) ENSOCUG00000031699 #22 ENSOCUG00000039549 ENSOCUG00000034412 ENSOCUG00000029742 EXO1 (ENSOCUG00000016157) ENSOCUG00000026989 OPN3 (ENSOCUG00000007707) KMO (ENSOCUG00000007699) ENSOCUG00000021494 RGS7 (ENSOCUG00000011881) GREM2 (ENSOCUG00000000171) ENSOCUG00000033848 FMN2 (ENSOCUG00000003998) ENSOCUG00000034549 ENSOCUG00000024765 CHRM3 (ENSOCUG00000009346)