Murinae	ANCESTRAL SPECIES	27	ENSGT00390000001136	ENSGT00390000007753.a	ENSGT00940000153986.b.a #7	ENSGT00940000156318 #8	ENSGT00940000156359 #10	ENSGT01100000263497.A #11	ENSGT00940000156562 #12	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996 #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #25	ENSGT00940000157852 #26	ENSGT00940000155142 #27	ENSGT00390000011176 #28	ENSGT00940000156175 #29	ENSGT00390000000481 #30	ENSGT00950000182882.A.b.a #31	ENSGT00940000153143.a.a.e.b #32	ENSGT00940000153143.a.b.b.b #33	ENSGT00940000153143.a.b.b.a.b.d.b.a.b ##37	ENSGT00940000155476	ENSGT00940000161910	ENSGT00940000160766	ENSGT00940000161182
Mus	ANCESTRAL SPECIES	18	ENSGT00390000007753.a	ENSGT00940000153986.b.a #7	ENSGT00940000156318 #8	ENSGT00940000168709 #9	ENSGT00940000156359 #10	ENSGT01100000263497.A #11	ENSGT00940000156562 #12	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996 #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #25	ENSGT00940000157852 #26	ENSGT00940000155142 #27	ENSGT00390000011176 #28	ENSGT00940000156175 #29	ENSGT00390000000481 #30	ENSGT00950000182882.A.b.a #31	ENSGT00940000153143.a.a.e.b #32	ENSGT00940000153143.a.b.b.b.j #33	ENSGT00940000153143.a.b.a #34	ENSGT00940000168125 #35	ENSGT00950000186470 #36	ENSGT00860000135699	ENSGT00940000153143.a.b.b.b.i ##37
Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000007753.a	ENSGT00940000153986.b.a #7	ENSGT00940000156318 #8	ENSGT00940000168709 #9	ENSGT00940000156359 #10	ENSGT01100000263497.A #11	ENSGT00940000156562 #12	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996.db #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #25	ENSGT00940000157852 #26	ENSGT00940000155142 #27	ENSGT00390000011176 #28	ENSGT00940000156175 #29	ENSGT00390000000481 #30	ENSGT00950000182882.A.b.a #31	ENSGT00940000153143.a.a.e.b #32	ENSGT00940000153143.a.b.b.b.j #33	ENSGT00940000153143.a.b.a #34	ENSGT00940000168125 #35	ENSGT00950000186470 #36	ENSGT00860000135699	ENSGT00940000153143.a.b.b.b.i ##37
Ryukyu mouse	MODERN SPECIES	4	Gpr137b (MGP_CAROLIEiJ_G0018227) #7	Nid1 (MGP_CAROLIEiJ_G0018228) #8	MGP_CAROLIEiJ_G0018229 #9	Lyst (MGP_CAROLIEiJ_G0018230) #10	Gng4 (MGP_CAROLIEiJ_G0018231) #11	B3galnt2 (MGP_CAROLIEiJ_G0018232) #12	MGP_CAROLIEiJ_G0018233 #13	Tbce (MGP_CAROLIEiJ_G0018234) #14	Ggps1 (MGP_CAROLIEiJ_G0018235) #15	Arid4b (MGP_CAROLIEiJ_G0018236) #16	Hecw1 (MGP_CAROLIEiJ_G0018237) #17	Mrpl32 (MGP_CAROLIEiJ_G0018238) #18	Psma2 (MGP_CAROLIEiJ_G0018239) #19	AW209491 (MGP_CAROLIEiJ_G0018240) #20	Gli3 (MGP_CAROLIEiJ_G0018241) #21	Inhba (MGP_CAROLIEiJ_G0018242) #22	Sugct (MGP_CAROLIEiJ_G0018243) #23	MGP_CAROLIEiJ_G0018244 #24	MGP_CAROLIEiJ_G0018245 #25	Cdk13 (MGP_CAROLIEiJ_G0018246) #26	Rala (MGP_CAROLIEiJ_G0018247) #27	Yae1d1 (MGP_CAROLIEiJ_G0018248) #28	Pou6f2 (MGP_CAROLIEiJ_G0018249) #29	Vps41 (MGP_CAROLIEiJ_G0018250) #30	MGP_CAROLIEiJ_G0018251 #31	Trgv7 (MGP_CAROLIEiJ_G0002202) #32	Trgv4 (MGP_CAROLIEiJ_G0002203) #33	MGP_CAROLIEiJ_G0002204 #34	Trgv5 (MGP_CAROLIEiJ_G0002205) #35	Trgj3 (MGP_CAROLIEiJ_G0002126) #36	MGP_CAROLIEiJ_G0002206 #37
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000007753.a	ENSGT00940000153986.b.a #7	ENSGT00940000156318 #8	ENSGT00940000168709 #9	ENSGT00940000156359 #10	ENSGT01100000263497.A #11	ENSGT00940000156562 #12	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996.db #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #25	ENSGT00940000157852 #26	ENSGT00940000155142 #27	ENSGT00390000011176 #28	ENSGT00940000156175 #29	ENSGT00390000000481 #30	ENSGT00950000182882.A.b.a #31	ENSGT00940000153143.a.a.e.b #32	ENSGT00940000153143.a.b.b.b.j #33	ENSGT00980000200102	ENSGT00940000168125 #35	ENSGT00950000186470 #36	ENSGT00860000135699	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d ##37
Mouse	MODERN SPECIES	4	Prl2c2 (ENSMUSG00000079092)	Prl2c5 (ENSMUSG00000055360)	Gpr137b (ENSMUSG00000021306) #7	Nid1 (ENSMUSG00000005397) #8	Lyst (ENSMUSG00000019726) #10	Gng4 (ENSMUSG00000021303) #11	B3galnt2 (ENSMUSG00000039242) #12	Tbce (ENSMUSG00000039233) #14	Ggps1 (ENSMUSG00000021302) #15	Arid4b (ENSMUSG00000039219) #16	Hecw1 (ENSMUSG00000021301) #17	Mrpl32 (ENSMUSG00000015672) #18	Psma2 (ENSMUSG00000015671) #19	AW209491 (ENSMUSG00000039182) #20	Gli3 (ENSMUSG00000021318) #21	Inhba (ENSMUSG00000041324) #22	Sugct (ENSMUSG00000055137) #23	Mplkip (ENSMUSG00000012429) #25	Cdk13 (ENSMUSG00000041297) #26	Rala (ENSMUSG00000008859) #27	Yae1d1 (ENSMUSG00000075054) #28	Pou6f2 (ENSMUSG00000009734) #29	Vps41 (ENSMUSG00000041236) #30	Amph (ENSMUSG00000021314) #31	Trgv7 (ENSMUSG00000076744) #32	Trgv4 (ENSMUSG00000076745) #33	Trgv6 (ENSMUSG00000076746)	Trgv5 (ENSMUSG00000076747) #35	Trgj1 (ENSMUSG00000104962)	Trgc1 (ENSMUSG00000076749) ##37	Trgv3 (ENSMUSG00000076750) ##37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000007753.a	ENSGT00940000153986.b.a #7	ENSGT00940000156318 #8	ENSGT00940000168709 #9	ENSGT00940000156359 #10	ENSGT01100000263497.A #11	ENSGT00940000156562 #12	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996.db #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #25	ENSGT00940000157852 #26	ENSGT00940000155142 #27	ENSGT00390000011176 #28	ENSGT00940000156175 #29	ENSGT00390000000481 #30	ENSGT00950000182882.A.b.a #31	ENSGT00940000153143.a.a.e.b #32	ENSGT00940000153143.a.b.b.b.j #33	ENSGT00980000200102	ENSGT00940000168125 #35	ENSGT00950000186470 #36	ENSGT00860000135699	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d ##37
Steppe mouse	MODERN SPECIES	16												Mrpl32 (ENSMSIG00000013590) #18	Psma2 (ENSMSIG00000013613) #19	AW209491 (ENSMSIG00000013663) #20	Gli3 (ENSMSIG00000013680) #21	Inhba (ENSMSIG00000013725) #22	ENSMSIG00000013739	ENSMSIG00000013766
spretus	MODERN SPECIES	4	Gpr137b (MGP_SPRETEiJ_G0019085) #7	Nid1 (MGP_SPRETEiJ_G0019086) #8	MGP_SPRETEiJ_G0019087 #9	Lyst (MGP_SPRETEiJ_G0019088) #10	Gng4 (MGP_SPRETEiJ_G0019089) #11	MGP_SPRETEiJ_G0019090 ##13	B3galnt2 (MGP_SPRETEiJ_G0019091) #12	Tbce (MGP_SPRETEiJ_G0019092) #14	MGP_SPRETEiJ_G0019093 #15	Arid4b (MGP_SPRETEiJ_G0019094) #16	Hecw1 (MGP_SPRETEiJ_G0019095) #17	Mrpl32 (MGP_SPRETEiJ_G0019096) #18	Psma2 (MGP_SPRETEiJ_G0019097) #19	AW209491 (MGP_SPRETEiJ_G0019098) #20	Gli3 (MGP_SPRETEiJ_G0019099) #21	Inhba (MGP_SPRETEiJ_G0019100) #22	MGP_SPRETEiJ_G0019101 #23	Cdk13 (MGP_SPRETEiJ_G0019102) #26	Rala (MGP_SPRETEiJ_G0019103) #27	Yae1d1 (MGP_SPRETEiJ_G0019104) #28	Pou6f2 (MGP_SPRETEiJ_G0019105) #29	Vps41 (MGP_SPRETEiJ_G0019106) #30	MGP_SPRETEiJ_G0019107 #31	Trgv7 (MGP_SPRETEiJ_G0002330) #32	Trgv4 (MGP_SPRETEiJ_G0002331) #33	Trgv6 (MGP_SPRETEiJ_G0002332)	Trgv5 (MGP_SPRETEiJ_G0002333) #35	Trgj3 (MGP_SPRETEiJ_G0002253) #36	Trgj4 (MGP_SPRETEiJ_G0002254)	Trgc4 (MGP_SPRETEiJ_G0002244) ##37	Stard3nl (MGP_SPRETEiJ_G0019108)
Shrew mouse	MODERN SPECIES	7	Gpr137b (MGP_PahariEiJ_G0019277) #7	Nid1 (MGP_PahariEiJ_G0019278) #8	MGP_PahariEiJ_G0019279 #9	Lyst (MGP_PahariEiJ_G0019280) #10	Gng4 (MGP_PahariEiJ_G0019281) #11	B3galnt2 (MGP_PahariEiJ_G0019282) #12	MGP_PahariEiJ_G0019283 ##13	MGP_PahariEiJ_G0019284	Ggps1 (MGP_PahariEiJ_G0019285) #15	Arid4b (MGP_PahariEiJ_G0019286) #16	Hecw1 (MGP_PahariEiJ_G0019287) #17	Mrpl32 (MGP_PahariEiJ_G0019288) #18	Psma2 (MGP_PahariEiJ_G0019289) #19	AW209491 (MGP_PahariEiJ_G0019290) #20	Gli3 (MGP_PahariEiJ_G0019291) #21	Inhba (MGP_PahariEiJ_G0019292) #22	Sugct (MGP_PahariEiJ_G0019293) #23	MGP_PahariEiJ_G0019294 #25	MGP_PahariEiJ_G0019295 #25	Cdk13 (MGP_PahariEiJ_G0019296) #26	Rala (MGP_PahariEiJ_G0019297) #27	Yae1d1 (MGP_PahariEiJ_G0019298) #28	Pou6f2 (MGP_PahariEiJ_G0019299) #29	Vps41 (MGP_PahariEiJ_G0019300) #30	MGP_PahariEiJ_G0019301 #31	Trgv7 (MGP_PahariEiJ_G0002039) #32	Trgv4 (MGP_PahariEiJ_G0002040) #33	MGP_PahariEiJ_G0002041 #34	Trgv5 (MGP_PahariEiJ_G0002042) #35	Trgj3 (MGP_PahariEiJ_G0001962) #36	Trgj4 (MGP_PahariEiJ_G0001963)
Rat	MODERN SPECIES	8	Arhgap12 (ENSRNOG00000017791)	Kif5b (ENSRNOG00000017466)	B3galnt2 (ENSRNOG00000016855) #12	Tbce (ENSRNOG00000029667) #14	Ggps1 (ENSRNOG00000016767) #15	Arid4b (ENSRNOG00000016391) #16	ENSRNOG00000064563	Rbbp4-ps2 (ENSRNOG00000021292)	Hecw1 (ENSRNOG00000016046) #17	Mrpl32 (ENSRNOG00000015989) #18	Psma2 (ENSRNOG00000049920) #19	RGD1308147 (ENSRNOG00000015523) #20	Gabpb1l (ENSRNOG00000053439)	Psme1-ps1 (ENSRNOG00000061359)	Gli3 (ENSRNOG00000014395) #21	Inhba (ENSRNOG00000014320) #22	Sugct (ENSRNOG00000066247) #23	Mplkip (ENSRNOG00000013806) #25	Cdk13 (ENSRNOG00000013620) #26	Rala (ENSRNOG00000013454) #27	Yae1 (ENSRNOG00000013438) #28	AABR07027925.2 (ENSRNOG00000030925)	Pou6f2 (ENSRNOG00000013237) #29	Vps41 (ENSRNOG00000012940) #30	LOC100910792 (ENSRNOG00000059510) #31	ENSRNOG00000070051 #32	AABR07027872.1 (ENSRNOG00000055197) ##37	ENSRNOG00000066100 #37	ENSRNOG00000063508 ##37	Stard3nl (ENSRNOG00000052429)	LOC498759 (ENSRNOG00000050687)