Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000007753.a	ENSGT00940000153986.b.a #9	ENSGT00940000156318 #10	ENSGT00940000168709	ENSGT00940000156359 #11	ENSGT01100000263497.A #12	ENSGT00940000156562 #13	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996.db #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.a.e.b #31	ENSGT00940000153143.a.b.b.b.j #32	ENSGT00940000153143.a.b.a ##37	ENSGT00940000168125 #34	ENSGT00950000186470	ENSGT00860000135699	ENSGT00940000153143.a.b.b.b.i #37
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000007753.a	ENSGT00940000153986.b.a #9	ENSGT00940000156318 #10	ENSGT00940000168709	ENSGT00940000156359 #11	ENSGT01100000263497.A #12	ENSGT00940000156562 #13	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996.db #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.a.e.b #31	ENSGT00940000153143.a.b.b.b.j #32	ENSGT00980000200102 #33	ENSGT00940000168125 #34	ENSGT00950000186470	ENSGT00860000135699	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d ##37
Mouse	MODERN SPECIES	4	Prl2c2 (ENSMUSG00000079092) #7	Prl2c5 (ENSMUSG00000055360) #8	Gpr137b (ENSMUSG00000021306) #9	Nid1 (ENSMUSG00000005397) #10	Lyst (ENSMUSG00000019726) #11	Gng4 (ENSMUSG00000021303) #12	B3galnt2 (ENSMUSG00000039242) #13	Tbce (ENSMUSG00000039233) #14	Ggps1 (ENSMUSG00000021302) #15	Arid4b (ENSMUSG00000039219) #16	Hecw1 (ENSMUSG00000021301) #17	Mrpl32 (ENSMUSG00000015672) #18	Psma2 (ENSMUSG00000015671) #19	AW209491 (ENSMUSG00000039182) #20	Gli3 (ENSMUSG00000021318) #21	Inhba (ENSMUSG00000041324) #22	Sugct (ENSMUSG00000055137) #23	Mplkip (ENSMUSG00000012429) #24	Cdk13 (ENSMUSG00000041297) #25	Rala (ENSMUSG00000008859) #26	Yae1d1 (ENSMUSG00000075054) #27	Pou6f2 (ENSMUSG00000009734) #28	Vps41 (ENSMUSG00000041236) #29	Amph (ENSMUSG00000021314) #30	Trgv7 (ENSMUSG00000076744) #31	Trgv4 (ENSMUSG00000076745) #32	Trgv6 (ENSMUSG00000076746) #33	Trgv5 (ENSMUSG00000076747) #34	Trgj1 (ENSMUSG00000104962) #35	Trgc1 (ENSMUSG00000076749) #36	Trgv3 (ENSMUSG00000076750) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000007753.a	ENSGT00940000153986.b.a #9	ENSGT00940000156318 #10	ENSGT00940000168709	ENSGT00940000156359 #11	ENSGT01100000263497.A #12	ENSGT00940000156562 #13	ENSGT00530000063405.a #14	ENSGT00940000153498.A #15	ENSGT00940000158149 #16	ENSGT00940000158294 #17	ENSGT00390000014996.db #18	ENSGT00550000074870.b #19	ENSGT00390000014722 #20	ENSGT00940000155925 #21	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.a.e.b #31	ENSGT00940000153143.a.b.b.b.j #32	ENSGT00980000200102 #33	ENSGT00940000168125 #34	ENSGT00950000186470	ENSGT00860000135699	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d ##37
Steppe mouse	MODERN SPECIES	16												Mrpl32 (ENSMSIG00000013590) #18	Psma2 (ENSMSIG00000013613) #19	AW209491 (ENSMSIG00000013663) #20	Gli3 (ENSMSIG00000013680) #21	Inhba (ENSMSIG00000013725) #22	ENSMSIG00000013739	ENSMSIG00000013766
spretus	MODERN SPECIES	4	Gpr137b (MGP_SPRETEiJ_G0019085) #9	Nid1 (MGP_SPRETEiJ_G0019086) #10	MGP_SPRETEiJ_G0019087	Lyst (MGP_SPRETEiJ_G0019088) #11	Gng4 (MGP_SPRETEiJ_G0019089) #12	MGP_SPRETEiJ_G0019090	B3galnt2 (MGP_SPRETEiJ_G0019091) #13	Tbce (MGP_SPRETEiJ_G0019092) #14	MGP_SPRETEiJ_G0019093 #15	Arid4b (MGP_SPRETEiJ_G0019094) #16	Hecw1 (MGP_SPRETEiJ_G0019095) #17	Mrpl32 (MGP_SPRETEiJ_G0019096) #18	Psma2 (MGP_SPRETEiJ_G0019097) #19	AW209491 (MGP_SPRETEiJ_G0019098) #20	Gli3 (MGP_SPRETEiJ_G0019099) #21	Inhba (MGP_SPRETEiJ_G0019100) #22	MGP_SPRETEiJ_G0019101 #23	Cdk13 (MGP_SPRETEiJ_G0019102) #25	Rala (MGP_SPRETEiJ_G0019103) #26	Yae1d1 (MGP_SPRETEiJ_G0019104) #27	Pou6f2 (MGP_SPRETEiJ_G0019105) #28	Vps41 (MGP_SPRETEiJ_G0019106) #29	MGP_SPRETEiJ_G0019107 #30	Trgv7 (MGP_SPRETEiJ_G0002330) #31	Trgv4 (MGP_SPRETEiJ_G0002331) #32	Trgv6 (MGP_SPRETEiJ_G0002332) #33	Trgv5 (MGP_SPRETEiJ_G0002333) #34	Trgj3 (MGP_SPRETEiJ_G0002253)	Trgj4 (MGP_SPRETEiJ_G0002254)	Trgc4 (MGP_SPRETEiJ_G0002244) ##37	Stard3nl (MGP_SPRETEiJ_G0019108)
Ryukyu mouse	MODERN SPECIES	4	Gpr137b (MGP_CAROLIEiJ_G0018227) #9	Nid1 (MGP_CAROLIEiJ_G0018228) #10	MGP_CAROLIEiJ_G0018229	Lyst (MGP_CAROLIEiJ_G0018230) #11	Gng4 (MGP_CAROLIEiJ_G0018231) #12	B3galnt2 (MGP_CAROLIEiJ_G0018232) #13	MGP_CAROLIEiJ_G0018233	Tbce (MGP_CAROLIEiJ_G0018234) #14	Ggps1 (MGP_CAROLIEiJ_G0018235) #15	Arid4b (MGP_CAROLIEiJ_G0018236) #16	Hecw1 (MGP_CAROLIEiJ_G0018237) #17	Mrpl32 (MGP_CAROLIEiJ_G0018238) #18	Psma2 (MGP_CAROLIEiJ_G0018239) #19	AW209491 (MGP_CAROLIEiJ_G0018240) #20	Gli3 (MGP_CAROLIEiJ_G0018241) #21	Inhba (MGP_CAROLIEiJ_G0018242) #22	Sugct (MGP_CAROLIEiJ_G0018243) #23	MGP_CAROLIEiJ_G0018244 #24	MGP_CAROLIEiJ_G0018245 #24	Cdk13 (MGP_CAROLIEiJ_G0018246) #25	Rala (MGP_CAROLIEiJ_G0018247) #26	Yae1d1 (MGP_CAROLIEiJ_G0018248) #27	Pou6f2 (MGP_CAROLIEiJ_G0018249) #28	Vps41 (MGP_CAROLIEiJ_G0018250) #29	MGP_CAROLIEiJ_G0018251 #30	Trgv7 (MGP_CAROLIEiJ_G0002202) #31	Trgv4 (MGP_CAROLIEiJ_G0002203) #32	MGP_CAROLIEiJ_G0002204 ##37	Trgv5 (MGP_CAROLIEiJ_G0002205) #34	Trgj3 (MGP_CAROLIEiJ_G0002126)	MGP_CAROLIEiJ_G0002206 ##37